Citrus Sinensis ID: 006229
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 655 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FUY2 | 931 | Transcriptional corepress | yes | no | 0.763 | 0.537 | 0.549 | 1e-146 | |
| A2CEH0 | 490 | POC1 centriolar protein h | yes | no | 0.141 | 0.189 | 0.362 | 2e-10 | |
| P56094 | 682 | General transcriptional c | no | no | 0.138 | 0.133 | 0.360 | 3e-10 | |
| Q00808 | 1356 | Vegetative incompatibilit | yes | no | 0.091 | 0.044 | 0.463 | 3e-10 | |
| Q8YRI1 | 1526 | Uncharacterized WD repeat | yes | no | 0.145 | 0.062 | 0.36 | 7e-10 | |
| Q8TC44 | 478 | POC1 centriolar protein h | yes | no | 0.146 | 0.200 | 0.363 | 8e-10 | |
| P78706 | 604 | Transcriptional repressor | N/A | no | 0.096 | 0.104 | 0.457 | 9e-10 | |
| P16649 | 713 | General transcriptional c | yes | no | 0.111 | 0.102 | 0.418 | 9e-10 | |
| Q5RD06 | 451 | POC1 centriolar protein h | yes | no | 0.146 | 0.212 | 0.363 | 1e-09 | |
| Q8YV57 | 1683 | Uncharacterized WD repeat | no | no | 0.099 | 0.038 | 0.392 | 2e-09 |
| >sp|Q9FUY2|LEUNG_ARATH Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana GN=LUG PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 520 bits (1338), Expect = e-146, Method: Compositional matrix adjust.
Identities = 299/544 (54%), Positives = 381/544 (70%), Gaps = 44/544 (8%)
Query: 125 RRDSTQHLNDTGDDL-----------RPGFAKAFTTKMYEDRLKKLPFQRDSLDDATIKP 173
RRD + N + + L PG + +K YE+R+K +P QR+SLD+A +K
Sbjct: 185 RRDGSHLANGSANGLVGNNSEPVMRQNPGSGSSLASKAYEERVK-MPTQRESLDEAAMK- 242
Query: 174 RLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGTHG-VSQQVQSRSQQPPLSTQEVKTE 232
R DN+ QLLDP+HA++LK+AA QP+GQ LH T G +S QVQ+R+QQ P S ++K+E
Sbjct: 243 RFGDNVGQLLDPSHASILKSAAASGQPAGQVLHSTSGGMSPQVQTRNQQLPGSAVDIKSE 302
Query: 233 MNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSL--TQPYN 290
+NP + PR A EGSLIG+ GSNQG+ N+TLKGWPLTG DQ RSGLLQQQK +Q ++
Sbjct: 303 INPVLTPRTAVPEGSLIGIPGSNQGSNNLTLKGWPLTGFDQLRSGLLQQQKPFMQSQSFH 362
Query: 291 QLQL------QQLMLQAQQNLASPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVST 344
QL + QQLML AQQNL S S ++ E+R+L+ML N+R+M L +DG +SVGD++
Sbjct: 363 QLNMLTPQHQQQLML-AQQNLNSQSVSE-ENRRLKMLLNNRSMTLGKDGLGSSVGDVLPN 420
Query: 345 VGSAMQIISPGLPRGDNDLLIKIQQQQQQLQHYSHH-------------------PLSSQ 385
VGS++Q LPRGD D+L+K++ Q Q + L++
Sbjct: 421 VGSSLQPGGSLLPRGDTDMLLKLKMALLQQQQQNQQQGGGNPPQPQPQPQPLNQLALTNP 480
Query: 386 QSQNSNPLLQQQDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPANSSG 445
Q Q+SN + QQ+K+ GGS+TMDGS+SN+F+GN+Q KNQ GRKRKQ VSSSGPANSSG
Sbjct: 481 QPQSSNHSIHQQEKLGGGGSITMDGSISNSFRGNEQVLKNQSGRKRKQPVSSSGPANSSG 540
Query: 446 TANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTD 504
TANT GP+PSS S + HTPGDVIS P L H+G SSKS++MFG++G G+LTS NQL D
Sbjct: 541 TANTAGPSPSSAPSTPSTHTPGDVISMPNLPHSGGSSKSMMMFGTEGTGTLTSPSNQLAD 600
Query: 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFS 564
MDRFV+DGSLDDNVESFLS +D D RD V R +V KGFTFTE + AST+KV CHFS
Sbjct: 601 MDRFVEDGSLDDNVESFLSQEDGDQRDAVTRCMDVSKGFTFTEVNSVRASTTKVTCCHFS 660
Query: 565 PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624
DGK+LA+ GHDKKAVLW T++ K+TLEEHT ITD+RFSPS RLATSS D+TVRVW
Sbjct: 661 SDGKMLASAGHDKKAVLWYTDTMKPKTTLEEHTAMITDIRFSPSQLRLATSSFDKTVRVW 720
Query: 625 DTEN 628
D +N
Sbjct: 721 DADN 724
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Transcription repressor subunit of the SEU-LUG transcriptional corepressor of the C class floral homeotic gene AGAMOUS during the early stages of floral meristem development. Is part of the A class cadastral complex that define the boundaries between the A and C class homeotic genes expression and function. Interacts together with APETALA2 and SEUSS to repress AGAMOUS expression. Also plays a role in ovule and pollen development. Arabidopsis thaliana (taxid: 3702) |
| >sp|A2CEH0|POC1B_DANRE POC1 centriolar protein homolog B OS=Danio rerio GN=poc1b PE=2 SV=1 | Back alignment and function description |
|---|
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 50/102 (49%), Gaps = 9/102 (8%)
Query: 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 606
E + A T+ V S HFS DG+ L T DK +W E +L HT W+ RFS
Sbjct: 94 ESTVFKAHTASVRSVHFSRDGQRLVTASDDKSVKVWGVERKKFLYSLNRHTNWVRCARFS 153
Query: 607 PSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIG 648
P +A+ DRTVR+WDT + ++CI + T G
Sbjct: 154 PDGRLIASCGDDRTVRLWDTSS---------HQCINIFTDYG 186
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Required for ciliogenesis. Danio rerio (taxid: 7955) |
| >sp|P56094|TUP1_KLULA General transcriptional corepressor TUP1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=TUP1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 67.8 bits (164), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 6/97 (6%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
+ S FSPDGK LATG DK +W E+ + TL+ H Q I + + PS ++L + S
Sbjct: 409 IRSVCFSPDGKFLATGAEDKLIRIWDLETKKIVMTLKGHEQDIYSLDYFPSGNKLVSGSG 468
Query: 618 DRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAP 654
DRTVR+WD LT C + + + + +P
Sbjct: 469 DRTVRIWD------LTTGTCSLTLSIEDGVTTVAVSP 499
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Represses transcription by RNA polymerase II. Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590) |
| >sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 67.4 bits (163), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 44/69 (63%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V+S FSPDG+ +A+G DK +W T S T TLE H W+ V FSP R+A+ S+
Sbjct: 1180 VQSVAFSPDGQRVASGSSDKTIKIWDTASGTCTQTLEGHGGWVQSVAFSPDGQRVASGSS 1239
Query: 618 DRTVRVWDT 626
D T+++WDT
Sbjct: 1240 DNTIKIWDT 1248
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Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c. Podospora anserina (taxid: 5145) |
| >sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 66.2 bits (160), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 53/100 (53%), Gaps = 5/100 (5%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T+ V S F+PDG +LA+G D+ LW S T + HT W++ V FSP + LA+
Sbjct: 1284 TNWVNSVAFNPDGSMLASGSGDQTVRLWEISSSKCLHTFQGHTSWVSSVTFSPDGTMLAS 1343
Query: 615 SSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAP 654
S D+TVR+W + C Y + + +GS F+P
Sbjct: 1344 GSDDQTVRLWSISSGE-----CLYTFLGHTNWVGSVIFSP 1378
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Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q8TC44|POC1B_HUMAN POC1 centriolar protein homolog B OS=Homo sapiens GN=POC1B PE=1 SV=1 | Back alignment and function description |
|---|
Score = 66.2 bits (160), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 3/99 (3%)
Query: 530 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV 589
RDR R K F+EF+ A T+ V S FS DG+ LAT DK +W
Sbjct: 80 RDRTVRLWIPDKRGKFSEFK---AHTAPVRSVDFSADGQFLATASEDKSIKVWSMYRQRF 136
Query: 590 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628
+L HT W+ +FSP + + S D+T+++WDT N
Sbjct: 137 LYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTN 175
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Required for ciliogenesis. Homo sapiens (taxid: 9606) |
| >sp|P78706|RCO1_NEUCR Transcriptional repressor rco-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rco-1 PE=4 SV=2 | Back alignment and function description |
|---|
Score = 65.9 bits (159), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 42/70 (60%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
+ S FSPDGK LATG DK +W +S T+++T H Q I + FS +A+ S
Sbjct: 347 IRSVCFSPDGKYLATGAEDKLIRVWDIQSRTIRNTFHGHEQDIYSLDFSRDGRTIASGSG 406
Query: 618 DRTVRVWDTE 627
DRTVR+WD E
Sbjct: 407 DRTVRLWDIE 416
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Represses transcription by RNA polymerase II. May be involved at several stages of conidiation and other growth and development processes. Appears to regulate genes that are expressed in asexual and sexual spore pathways. Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110) |
| >sp|P16649|TUP1_YEAST General transcriptional corepressor TUP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TUP1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 65.9 bits (159), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 43/74 (58%)
Query: 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR 611
P+S + S FSPDGK LATG D+ +W E+ + L+ H Q I + + PS +
Sbjct: 440 PSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDK 499
Query: 612 LATSSADRTVRVWD 625
L + S DRTVR+WD
Sbjct: 500 LVSGSGDRTVRIWD 513
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Acts as component of the CYC8-TUP1 corepressor complex which is involved in the repression of many genes in a wide variety of physiological processes including heme-regulated and catabolite repressed genes. May also be involved in the derepression of at least some target genes. The complex is recruited to target genes by interaction with DNA-bound transcriptional repressors, like MATALPHA2, MIG1, RFX1 and SKO1. The complex recruits histone deacetylases to produce a repressive chromatin structure, interacts with hypoacetylated N-terminal tails of histones H3 and H4 that have been programmed for repression by the action of histone deacetylases and interferes directly with the transcriptional machinery by associating with the RNA polymerase II mediator complex. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|Q5RD06|POC1B_PONAB POC1 centriolar protein homolog B OS=Pongo abelii GN=POC1B PE=2 SV=1 | Back alignment and function description |
|---|
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 3/99 (3%)
Query: 530 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV 589
RDR R K F+EF+ A T+ V S FS DG+ LAT DK +W
Sbjct: 80 RDRTVRLWIPDKRGKFSEFK---AHTAPVRSVDFSADGQFLATASEDKSIKVWSMYRQRF 136
Query: 590 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628
+L HT W+ +FSP + + S D+T+++WDT N
Sbjct: 137 LYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTN 175
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Required for ciliogenesis. Pongo abelii (taxid: 9601) |
| >sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 47/79 (59%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 607
F+ + V S FSPDG+ +A+GG DK LW T T+ T+ H Q + +V FSP
Sbjct: 1106 FRTLNGHEDAVYSVSFSPDGQTIASGGSDKTIKLWQTSDGTLLKTITGHEQTVNNVYFSP 1165
Query: 608 SLSRLATSSADRTVRVWDT 626
LA++S+D ++++WDT
Sbjct: 1166 DGKNLASASSDHSIKLWDT 1184
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Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 655 | ||||||
| 297738887 | 871 | unnamed protein product [Vitis vinifera] | 0.952 | 0.716 | 0.685 | 0.0 | |
| 225445366 | 878 | PREDICTED: transcriptional corepressor L | 0.952 | 0.710 | 0.678 | 0.0 | |
| 359484630 | 883 | PREDICTED: transcriptional corepressor L | 0.948 | 0.703 | 0.670 | 0.0 | |
| 147784075 | 946 | hypothetical protein VITISV_002025 [Viti | 0.948 | 0.656 | 0.645 | 0.0 | |
| 280967728 | 905 | LisH-SSDP-WD40 [Malus x domestica] | 0.937 | 0.678 | 0.672 | 0.0 | |
| 449441952 | 891 | PREDICTED: transcriptional corepressor L | 0.949 | 0.698 | 0.628 | 0.0 | |
| 449522548 | 900 | PREDICTED: transcriptional corepressor L | 0.949 | 0.691 | 0.622 | 0.0 | |
| 449441950 | 900 | PREDICTED: transcriptional corepressor L | 0.949 | 0.691 | 0.622 | 0.0 | |
| 356515484 | 892 | PREDICTED: transcriptional corepressor L | 0.954 | 0.700 | 0.616 | 0.0 | |
| 357466351 | 941 | NAD(P)H-quinone oxidoreductase subunit [ | 0.954 | 0.664 | 0.565 | 0.0 |
| >gi|297738887|emb|CBI28132.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 764 bits (1974), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/668 (68%), Positives = 514/668 (76%), Gaps = 44/668 (6%)
Query: 1 MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
MSQ NWEADKMLDVYI+DY LKRKLHASAKAFQ E KVST+PVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYFLKRKLHASAKAFQAEAKVSTEPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQ 120
DIFIARTNEKHSE+AASYIE+Q+IKARE QQQQQQQ Q+ QQ QQ Q Q Q+ QQ
Sbjct: 61 DIFIARTNEKHSEAAASYIETQLIKARELQQQQQQQQQQQQQQQQHQKPQQQQQQQQQQM 120
Query: 121 QQQQRR----------------DSTQHLNDTGDDL---------RPGFAKAFTTKMYEDR 155
Q QQ D TQ LN +G+ L P A TKMYE+R
Sbjct: 121 QMQQLLLQRHVQQQQQQQQQRRDGTQILNGSGNGLVSNDALMRQNPATANTLATKMYEER 180
Query: 156 LKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGT-HGVS-- 212
LK LP QRD LDDA +K R DNM QLL+PNHA+LLK+AA+ QP GQTLHG G+S
Sbjct: 181 LK-LPLQRDPLDDAAMKQRFGDNMGQLLEPNHASLLKSAAVSGQP-GQTLHGAPGGISGN 238
Query: 213 -QQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGL 271
QQVQSR+QQ +S+ ++K+EMNP MNPRAAG EGSLIGVHGSNQG N+TLKGWPLTGL
Sbjct: 239 LQQVQSRNQQLQVSS-DIKSEMNPMMNPRAAGPEGSLIGVHGSNQGGNNLTLKGWPLTGL 297
Query: 272 DQFRSGLLQQQKSLTQP----YNQLQLQQLMLQAQQNLASPSANDLESRKLRMLHNSRNM 327
DQ RSG+LQQ KSL QP + QQL+LQAQQNLASPSA+DLE RKLRML NSRN
Sbjct: 298 DQLRSGILQQHKSLIQPSQPFHQLQLQQQLLLQAQQNLASPSASDLECRKLRMLLNSRN- 356
Query: 328 GLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIKIQQQQQQLQHYSH-----HPL 382
L +DG N+VGD+V+ VGS MQ+ P LPRGD D+LIK+QQQQ Q + HPL
Sbjct: 357 SLGKDGQLNTVGDVVANVGSPMQVGCPVLPRGDTDMLIKLQQQQLQNSNQQQQQYLQHPL 416
Query: 383 SSQQSQNSNP-LLQQQDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPA 441
SSQQSQ+SN LL QQDK++ GS+ +DGSMSNTF+GNDQ SK QIGRKRKQ VSSSGPA
Sbjct: 417 SSQQSQSSNHHLLHQQDKMIGSGSIGLDGSMSNTFRGNDQTSKGQIGRKRKQPVSSSGPA 476
Query: 442 NSSGTANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPN 500
NSSGT NT GP+PSS S + HTPGDVIS PTL HNG SSKSLLM+GSDGMG+ TSAPN
Sbjct: 477 NSSGTGNTAGPSPSSAPSTPSTHTPGDVISMPTLSHNGGSSKSLLMYGSDGMGTHTSAPN 536
Query: 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 560
QL D+DRFVDDGSLDDNVESFL+ DD DPRD VGRS + KGF+F+E + I ASTSKVE
Sbjct: 537 QLADVDRFVDDGSLDDNVESFLAHDDGDPRDTVGRSVDGSKGFSFSEVRCITASTSKVEC 596
Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620
CHFS DGKLLATGG DKKAVLWCTESFT KS LEEH+Q ITD+RFSPS+ RLATSSAD+T
Sbjct: 597 CHFSSDGKLLATGGQDKKAVLWCTESFTAKSRLEEHSQMITDIRFSPSMPRLATSSADKT 656
Query: 621 VRVWDTEN 628
VRVWD +N
Sbjct: 657 VRVWDVDN 664
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225445366|ref|XP_002284908.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 761 bits (1966), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/675 (67%), Positives = 513/675 (76%), Gaps = 51/675 (7%)
Query: 1 MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
MSQ NWEADKMLDVYI+DY LKRKLHASAKAFQ E KVST+PVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYFLKRKLHASAKAFQAEAKVSTEPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQ 120
DIFIARTNEKHSE+AASYIE+Q+IKARE QQQQQQQ Q+ QQ QQ Q Q Q+ QQ
Sbjct: 61 DIFIARTNEKHSEAAASYIETQLIKARELQQQQQQQQQQQQQQQQHQKPQQQQQQQQQQM 120
Query: 121 QQQQRR----------------DSTQHLNDTGDDL---------RPGFAKAFTTKMYEDR 155
Q QQ D TQ LN +G+ L P A TKMYE+R
Sbjct: 121 QMQQLLLQRHVQQQQQQQQQRRDGTQILNGSGNGLVSNDALMRQNPATANTLATKMYEER 180
Query: 156 LKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGT-HGVS-- 212
LK LP QRD LDDA +K R DNM QLL+PNHA+LLK+AA+ QP GQTLHG G+S
Sbjct: 181 LK-LPLQRDPLDDAAMK-RFGDNMGQLLEPNHASLLKSAAVSGQP-GQTLHGAPGGISGN 237
Query: 213 -QQVQSRSQQPPLSTQ-EVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTG 270
QQVQSR+QQ +S+ ++K+EMNP MNPRAAG EGSLIGVHGSNQG N+TLKGWPLTG
Sbjct: 238 LQQVQSRNQQLQVSSACDIKSEMNPMMNPRAAGPEGSLIGVHGSNQGGNNLTLKGWPLTG 297
Query: 271 LDQFRSGLLQQQKSLTQP----YNQLQLQQLMLQAQQNLASPSANDLESRKLRMLHNSRN 326
LDQ RSG+LQQ KSL QP + QQL+LQAQQNLASPSA+DLE RKLRML NSRN
Sbjct: 298 LDQLRSGILQQHKSLIQPSQPFHQLQLQQQLLLQAQQNLASPSASDLECRKLRMLLNSRN 357
Query: 327 MGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIK-----------IQQQQQQLQ 375
L +DG N+VGD+V+ VGS MQ+ P LPRGD D+LIK +Q QQ Q
Sbjct: 358 -SLGKDGQLNTVGDVVANVGSPMQVGCPVLPRGDTDMLIKRLNVSQLQQQQLQNSNQQQQ 416
Query: 376 HYSHHPLSSQQSQNSNP-LLQQQDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQA 434
Y HPLSSQQSQ+SN LL QQDK++ GS+ +DGSMSNTF+GNDQ SK QIGRKRKQ
Sbjct: 417 QYLQHPLSSQQSQSSNHHLLHQQDKMIGSGSIGLDGSMSNTFRGNDQTSKGQIGRKRKQP 476
Query: 435 VSSSGPANSSGTANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGASSKSLLMFGSDGMG 493
VSSSGPANSSGT NT GP+PSS S + HTPGDVIS PTL HNG SSKSLLM+GSDGMG
Sbjct: 477 VSSSGPANSSGTGNTAGPSPSSAPSTPSTHTPGDVISMPTLSHNGGSSKSLLMYGSDGMG 536
Query: 494 SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA 553
+ TSAPNQL D+DRFVDDGSLDDNVESFL+ DD DPRD VGRS + KGF+F+E + I A
Sbjct: 537 THTSAPNQLADVDRFVDDGSLDDNVESFLAHDDGDPRDTVGRSVDGSKGFSFSEVRCITA 596
Query: 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA 613
STSKVE CHFS DGKLLATGG DKKAVLWCTESFT KS LEEH+Q ITD+RFSPS+ RLA
Sbjct: 597 STSKVECCHFSSDGKLLATGGQDKKAVLWCTESFTAKSRLEEHSQMITDIRFSPSMPRLA 656
Query: 614 TSSADRTVRVWDTEN 628
TSSAD+TVRVWD +N
Sbjct: 657 TSSADKTVRVWDVDN 671
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359484630|ref|XP_003633134.1| PREDICTED: transcriptional corepressor LEUNIG-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 758 bits (1958), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/683 (67%), Positives = 511/683 (74%), Gaps = 62/683 (9%)
Query: 1 MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
MSQ NWEADKMLDVYI+DY LKRKLHASAKAFQ E KVST+PVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYFLKRKLHASAKAFQAEAKVSTEPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQ 120
DIFIARTNEKHSE+AASYIE+Q+IKARE QQQQQQQ Q+ QQ QQ Q Q Q+ QQ
Sbjct: 61 DIFIARTNEKHSEAAASYIETQLIKARELQQQQQQQQQQQQQQQQHQKPQQQQQQQQQQM 120
Query: 121 QQQQRR----------------DSTQHLNDTGDDL---------RPGFAKAFTTKMYEDR 155
Q QQ D TQ LN +G+ L P A TKMYE+R
Sbjct: 121 QMQQLLLQRHVQQQQQQQQQRRDGTQILNGSGNGLVSNDALMRQNPATANTLATKMYEER 180
Query: 156 LKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGT-HGVS-- 212
LK LP QRD LDDA +K R DNM QLL+PNHA+LLK+AA+ QP GQTLHG G+S
Sbjct: 181 LK-LPLQRDPLDDAAMKQRFGDNMGQLLEPNHASLLKSAAVSGQP-GQTLHGAPGGISGN 238
Query: 213 -QQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGL 271
QQVQSR+QQ Q++K+EMNP MNPRAAG EGSLIGVHGSNQG N+TLKGWPLTGL
Sbjct: 239 LQQVQSRNQQ----LQDIKSEMNPMMNPRAAGPEGSLIGVHGSNQGGNNLTLKGWPLTGL 294
Query: 272 DQFRSGLLQQQKSLTQP----YNQLQLQQLMLQAQQNLASPSANDLESRKLRMLHNSRNM 327
DQ RSG+LQQ KSL QP + QQL+LQAQQNLASPSA+DLE RKLRML NSRN
Sbjct: 295 DQLRSGILQQHKSLIQPSQPFHQLQLQQQLLLQAQQNLASPSASDLECRKLRMLLNSRN- 353
Query: 328 GLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIK-----------IQQQQQQLQH 376
L +DG N+VGD+V+ VGS MQ+ P LPRGD D+LIK +Q QQ Q
Sbjct: 354 SLGKDGQLNTVGDVVANVGSPMQVGCPVLPRGDTDMLIKRLNVSQLQQQQLQNSNQQQQQ 413
Query: 377 YSHHPLSSQQSQNSNP-LLQQQDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQAV 435
Y HPLSSQQSQ+SN LL QQDK++ GS+ +DGSMSNTF+GNDQ SK QIGRKRKQ V
Sbjct: 414 YLQHPLSSQQSQSSNHHLLHQQDKMIGSGSIGLDGSMSNTFRGNDQTSKGQIGRKRKQPV 473
Query: 436 SSSGPANSSGTANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGASSKSLLMFGSDGMGS 494
SSSGPANSSGT NT GP+PSS S + HTPGDVIS PTL HNG SSKSLLM+GSDGMG+
Sbjct: 474 SSSGPANSSGTGNTAGPSPSSAPSTPSTHTPGDVISMPTLSHNGGSSKSLLMYGSDGMGT 533
Query: 495 LTSAPNQL---------TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTF 545
TSAPNQL D+DRFVDDGSLDDNVESFL+ DD DPRD VGRS + KGF+F
Sbjct: 534 HTSAPNQLWNNRYNNLQADVDRFVDDGSLDDNVESFLAHDDGDPRDTVGRSVDGSKGFSF 593
Query: 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF 605
+E + I ASTSKVE CHFS DGKLLATGG DKKAVLWCTESFT KS LEEH+Q ITD+RF
Sbjct: 594 SEVRCITASTSKVECCHFSSDGKLLATGGQDKKAVLWCTESFTAKSRLEEHSQMITDIRF 653
Query: 606 SPSLSRLATSSADRTVRVWDTEN 628
SPS+ RLATSSAD+TVRVWD +N
Sbjct: 654 SPSMPRLATSSADKTVRVWDVDN 676
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147784075|emb|CAN76829.1| hypothetical protein VITISV_002025 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 743 bits (1919), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/709 (64%), Positives = 513/709 (72%), Gaps = 88/709 (12%)
Query: 1 MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
MSQ NWEADKMLDVYI+DY LKRKLHASAKAFQ E KVST+PVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYFLKRKLHASAKAFQAEAKVSTEPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSESAASYIE-------------------SQVIKAREQQQQQQQQHQKPQ 101
DIFIARTNEKHSE+AASYIE +Q+IKARE QQQQQQQ Q+ Q
Sbjct: 61 DIFIARTNEKHSEAAASYIELFLEKFFNNLTVKSMLKCQTQLIKARELQQQQQQQQQQQQ 120
Query: 102 QHQQMQVQQLLLQRHAQQQQQQQRR------------------DSTQHLNDTGDDL---- 139
Q QQ Q Q Q+ QQQQ Q ++ D TQ LN +G+ L
Sbjct: 121 QQQQHQKPQQQQQQQQQQQQMQMQQLLLQRHVQQQQQQQQQRRDGTQILNGSGNGLVSND 180
Query: 140 -----RPGFAKAFTTKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAA 194
P A TKMYE+RLK LP QRD LDDA +K R DNM QLL+PNHA+LLK+A
Sbjct: 181 ALMRQNPATANTLATKMYEERLK-LPLQRDPLDDAAMKQRFGDNMGQLLEPNHASLLKSA 239
Query: 195 AIGSQPSGQTLHGT-HGVS---QQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIG 250
A+ QP GQTLHG G+S QQVQSR+QQ Q++K+EMNP MNPRAAG EGSLIG
Sbjct: 240 AVSGQP-GQTLHGAPGGISGNLQQVQSRNQQ----LQDIKSEMNPMMNPRAAGPEGSLIG 294
Query: 251 VHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSLTQP----YNQLQLQQLMLQAQQNLA 306
VHGSNQG N+TLKGWPLTGLDQ RSG+LQQ KSL QP + QQL+LQAQQNLA
Sbjct: 295 VHGSNQGGNNLTLKGWPLTGLDQLRSGILQQHKSLIQPSQPFHQLQLQQQLLLQAQQNLA 354
Query: 307 SPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIK 366
SPSA+DLE RKLRML NSRN L +DG N+VGD+V+ VGS MQ+ P LPRGD D+LIK
Sbjct: 355 SPSASDLECRKLRMLLNSRN-SLGKDGQLNTVGDVVANVGSPMQVGCPVLPRGDTDMLIK 413
Query: 367 -----------IQQQQQQLQHYSHHPLSSQQSQNSNP-LLQQQDKILAGGSMTMDGSMSN 414
+Q QQ Q Y HPLSSQQSQ+SN LL QQDK++ GS+ +DGSMSN
Sbjct: 414 RLNVSQLQQQQLQNSNQQQQQYLQHPLSSQQSQSSNHHLLHQQDKMIGSGSIGLDGSMSN 473
Query: 415 TFQGNDQASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPST-HTPGDVISRPT 473
TF+GNDQ SK QIGRKRKQ VSSSGPANSSGT NT GP+PSS S + HTPGDVIS PT
Sbjct: 474 TFRGNDQTSKGQIGRKRKQPVSSSGPANSSGTGNTAGPSPSSAPSTPSTHTPGDVISMPT 533
Query: 474 LQHNGASSKSLLMFGSDGMGSLTSAPNQL--------------TDMDRFVDDGSLDDNVE 519
L HNG SSKSLLM+GSDGMG+ TSAPNQL D+DRFVDDGSLDDNVE
Sbjct: 534 LSHNGGSSKSLLMYGSDGMGTHTSAPNQLHSVGQWNNRYNNLQADVDRFVDDGSLDDNVE 593
Query: 520 SFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKA 579
SFL+ DD DPRD VGRS + KGF+F+E + I ASTSKVE CHFS DGKLLATGG DKKA
Sbjct: 594 SFLAHDDGDPRDTVGRSVDGSKGFSFSEVRCITASTSKVECCHFSSDGKLLATGGQDKKA 653
Query: 580 VLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628
VLWCTESFT KS LEEH+Q ITD+RFSPS+ RLATSSAD+TVRVWD +N
Sbjct: 654 VLWCTESFTAKSRLEEHSQMITDIRFSPSMPRLATSSADKTVRVWDVDN 702
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|280967728|gb|ACZ98534.1| LisH-SSDP-WD40 [Malus x domestica] | Back alignment and taxonomy information |
|---|
Score = 740 bits (1910), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/653 (67%), Positives = 506/653 (77%), Gaps = 39/653 (5%)
Query: 9 DKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFWDIFIARTN 68
D LDVYIYDYL+KRKLHASAKAFQ EGKVSTDPVAIDAPGGFLFEWWSVFWDIFIARTN
Sbjct: 4 DHRLDVYIYDYLMKRKLHASAKAFQDEGKVSTDPVAIDAPGGFLFEWWSVFWDIFIARTN 63
Query: 69 EKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRR-- 126
EKHSE+AASYIE+QVIKAREQQQQQ+ Q Q Q QQ+ +Q+ Q+ Q+QQQQQ++
Sbjct: 64 EKHSEAAASYIETQVIKAREQQQQQKPQLQDQMQMQQLLLQRHAQQQQQQRQQQQQQQQP 123
Query: 127 -----------DSTQHLNDTGDD--LR--PGFAKAFTTKMYEDRLKKLPFQRDSLDDATI 171
D TQ N T +D LR P A + TKMYE+RLK LP QRD++DDA I
Sbjct: 124 QQQQQQQQQRRDGTQLHNGTANDSLLRQNPATANSMATKMYEERLK-LPPQRDAMDDAAI 182
Query: 172 KPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGTHGVS----QQVQSRSQQPPLSTQ 227
K RL DNM+QLLDPNH +++KAA G QP GQ LHGT G QQ SRSQQ P S+Q
Sbjct: 183 KQRLGDNMSQLLDPNHVSMMKAATAGGQPPGQMLHGTPGGVLGNLQQPHSRSQQLPGSSQ 242
Query: 228 EVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSLTQ 287
++K+E+ MNPRA EGSLIG HGSNQG N+TLKGWPLTG D+ RSG+LQQQ SL Q
Sbjct: 243 DIKSEV---MNPRAVAPEGSLIGTHGSNQGNNNLTLKGWPLTGFDRLRSGILQQQNSLMQ 299
Query: 288 ---PYNQLQLQQLMLQAQQNLASPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVST 344
PYNQL QQ ++ AQQNLASPS+NDL++R+++ML N+RNM L +DG +SV V
Sbjct: 300 SPQPYNQLLQQQQLMLAQQNLASPSSNDLDNRRMKMLLNNRNMVLGKDGQLSSVD--VPN 357
Query: 345 VGSAMQIISPGLPRGDNDLLIK---------IQQQQQQLQHYSHHPLSSQQSQNSNPLLQ 395
VGS Q+ P LPRGD D+L+K +Q QQ Q YS HPLS Q SQNS+ LQ
Sbjct: 358 VGSPAQVGCPVLPRGDADMLMKPTYQLQQQQMQSNNQQQQPYSQHPLSGQHSQNSSQHLQ 417
Query: 396 QQDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPS 455
Q +KI+ GSM DGSM NT QGNDQASKNQ+GRKRKQ VSSSGPANSSGT NT GP+PS
Sbjct: 418 QHEKIMGSGSMAPDGSMPNTLQGNDQASKNQLGRKRKQPVSSSGPANSSGTVNTTGPSPS 477
Query: 456 SPSSPSTHTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLD 515
SPS+PSTHT GDV+S PTL HNG SSKSLLMFGSDG+GS SAPN+LTD+DRFVDDGSL+
Sbjct: 478 SPSTPSTHTAGDVMSMPTLPHNGGSSKSLLMFGSDGLGSRASAPNKLTDVDRFVDDGSLE 537
Query: 516 DNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH 575
DNVESFLS DDADPR RV R ++V KGF+F E QLIPAST+KVE CH S DGK LATGGH
Sbjct: 538 DNVESFLSHDDADPRGRVVRCSDVSKGFSFKEVQLIPASTNKVECCHLSSDGKSLATGGH 597
Query: 576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628
D+KAVLWCTE+++VKSTL+EH+QWITDVRFSPS+SRLATSSAD+TVRVWD +N
Sbjct: 598 DRKAVLWCTETYSVKSTLDEHSQWITDVRFSPSMSRLATSSADKTVRVWDADN 650
|
Source: Malus x domestica Species: Malus x domestica Genus: Malus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449441952|ref|XP_004138746.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 2 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 734 bits (1896), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/690 (62%), Positives = 498/690 (72%), Gaps = 68/690 (9%)
Query: 1 MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
MSQ NWEADKMLDVYI+DYL+KR L A+A+AFQ EGKVS+DPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKATAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQ--LLLQRHAQ 118
DIFIARTNEKHS+ AASYIE+Q+IKAREQQQ QQQQ Q+ Q QQ LL+QRHAQ
Sbjct: 61 DIFIARTNEKHSDVAASYIETQLIKAREQQQHQQQQQQQTQPQQQQPQHMQMLLMQRHAQ 120
Query: 119 QQQQQQ------------------------RRDSTQHLNDTGDDL---------RPGFAK 145
QQQQQQ RRD Q LN + + PG
Sbjct: 121 QQQQQQQQQQHQQQQQPQQQQQQSQQQQQQRRDGAQLLNGSSNGFVGNDPLMRQNPGSVN 180
Query: 146 AFTTKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTL 205
A TKMYEDRLK LP QRDSLDD +K R DN+ QLLDPNHA++LK+AA SQ SGQ L
Sbjct: 181 ALATKMYEDRLK-LPLQRDSLDDGAMKQRYGDNVGQLLDPNHASILKSAAATSQSSGQVL 239
Query: 206 HG-THGVSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLK 264
HG T G+S QVQ RSQQ P ST ++KTE+NP +NPRAAG EGSL+G+ GSN G N+TLK
Sbjct: 240 HGSTGGMSPQVQPRSQQLPGSTPDIKTEINPVLNPRAAGPEGSLMGIPGSNHGGNNLTLK 299
Query: 265 GWPLTGLDQFRSGLLQQQKSLTQP---YNQLQL------QQLMLQAQQNLASPSANDLES 315
GWPLTGLDQ RSG+LQQQK Q + QLQ+ QQLML AQQNL SPS ND +
Sbjct: 300 GWPLTGLDQLRSGILQQQKPFIQAPQSFPQLQMLTPQHQQQLML-AQQNLTSPSVND-DG 357
Query: 316 RKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDN-DLLIKIQQ----- 369
R+LRML N+R +A+DG SNSVGD+V VGS +Q SP LPRGDN D+++KI+
Sbjct: 358 RRLRMLLNTR---MAKDGLSNSVGDVVPNVGSPLQAGSPLLPRGDNTDMILKIKMAQLQQ 414
Query: 370 ---------QQQQLQHYSHHPLSSQQSQNSNPLLQQQDKILAGGSMTMDGSMSNTFQGND 420
QQQQ Q H LS+QQSQ+SN + QQ+KI GS+TMDGSMSN+F+GND
Sbjct: 415 QQQQQQSSSQQQQQQQLQQHALSNQQSQSSNHNMHQQEKIGGAGSVTMDGSMSNSFRGND 474
Query: 421 QASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGA 479
Q SKNQ GRKRKQ VSSSGPANSSGTANT GP+PSS S + HTPGD IS P L H+G+
Sbjct: 475 QVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDAISMPALPHSGS 534
Query: 480 SSKSL-LMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAE 538
SSK L +MF SDG G+ TS NQL DMDR+V+DGSLDDNV+SFLS DD DPRD VGR +
Sbjct: 535 SSKPLTMMFNSDGTGTFTSPSNQLADMDRYVEDGSLDDNVDSFLSHDDGDPRDPVGRCMD 594
Query: 539 VGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ 598
KGFTFTE + ASTSKV SCHFS DGKLL +GGHDKKAVLW TE+ K++LEEH
Sbjct: 595 GSKGFTFTEVNSVRASTSKVSSCHFSSDGKLLVSGGHDKKAVLWYTENLKPKTSLEEHAA 654
Query: 599 WITDVRFSPSLSRLATSSADRTVRVWDTEN 628
+TDVRFSPS+ RLATSS DRTVRVWD +N
Sbjct: 655 IVTDVRFSPSMPRLATSSFDRTVRVWDADN 684
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449522548|ref|XP_004168288.1| PREDICTED: transcriptional corepressor LEUNIG-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 727 bits (1876), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/699 (62%), Positives = 500/699 (71%), Gaps = 77/699 (11%)
Query: 1 MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
MSQ NWEADKMLDVYI+DYL+KR L A+A+AFQ EGKVS+DPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKATAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSESAASYIESQVIKARE--QQQQQQQQHQKPQQHQQMQVQQLLLQRHA- 117
DIFIARTNEKHS+ AASYIE+Q+IKARE Q QQQQQQ +PQQ Q +Q LL+QRHA
Sbjct: 61 DIFIARTNEKHSDVAASYIETQLIKAREQQQHQQQQQQQTQPQQQQPQHMQMLLMQRHAQ 120
Query: 118 -----------------------QQQQQQQRRDSTQHLNDTGDDL---------RPGFAK 145
QQQQQQRRD Q LN + + PG
Sbjct: 121 QQQQQQQQQQHQQQQQPQQQQQQSQQQQQQRRDGAQLLNGSSNGFVGNDPLMRQNPGSVN 180
Query: 146 AFTTKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTL 205
A TKMYEDRL KLP QRDSLDD +K R DN+ QLLDPNHA++LK+AA SQ SGQ L
Sbjct: 181 ALATKMYEDRL-KLPLQRDSLDDGAMKQRYGDNVGQLLDPNHASILKSAAATSQSSGQVL 239
Query: 206 HG-THGVSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLK 264
HG T G+S QVQ RSQQ P ST ++KTE+NP +NPRAAG EGSL+G+ GSN G N+TLK
Sbjct: 240 HGSTGGMSPQVQPRSQQLPGSTPDIKTEINPVLNPRAAGPEGSLMGIPGSNHGGNNLTLK 299
Query: 265 GWPLTGLDQFRSGLLQQQKSLTQP---YNQLQL------QQLMLQAQQNLASPSANDLES 315
GWPLTGLDQ RSG+LQQQK Q + QLQ+ QQLML AQQNL SPS ND +
Sbjct: 300 GWPLTGLDQLRSGILQQQKPFIQAPQSFPQLQMLTPQHQQQLML-AQQNLTSPSVND-DG 357
Query: 316 RKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDN-DLLIKIQQ----- 369
R+LRML N+R +A+DG SNSVGD+V VGS +Q SP LPRGDN D+++KI+
Sbjct: 358 RRLRMLLNTR---MAKDGLSNSVGDVVPNVGSPLQAGSPLLPRGDNTDMILKIKMAQLQQ 414
Query: 370 ---------QQQQLQHYSHHPLSSQQSQNSNPLLQQQDKILAGGSMTMDGSMSNTFQGND 420
QQQQ Q H LS+QQSQ+SN + QQ+KI GS+TMDGSMSN+F+GND
Sbjct: 415 QQQQQQSSSQQQQQQQLQQHTLSNQQSQSSNHNMHQQEKIGGAGSVTMDGSMSNSFRGND 474
Query: 421 QASKNQIGRKRKQAVSSSGPANSSGTANTPG-PTPSSPSSPSTHTPGDVISRPTLQHNGA 479
Q SKNQ GRKRKQ VSSSGPANSSGTANT G S+PS+PSTHTPGD IS P L H+G+
Sbjct: 475 QVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDAISMPALPHSGS 534
Query: 480 SSKSL-LMFGSDGMGSLTSAPNQL---------TDMDRFVDDGSLDDNVESFLSPDDADP 529
SSK L +MF SDG G+ TS NQL DMDR+V+DGSLDDNV+SFLS DD DP
Sbjct: 535 SSKPLTMMFNSDGTGTFTSPSNQLWDDKELELQADMDRYVEDGSLDDNVDSFLSHDDGDP 594
Query: 530 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV 589
RD VGR + KGFTFTE + ASTSKV SCHFS DGKLL +GGHDKKAVLW TE+
Sbjct: 595 RDPVGRCMDGSKGFTFTEVNSVRASTSKVSSCHFSSDGKLLVSGGHDKKAVLWYTENLKP 654
Query: 590 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628
K++LEEH +TDVRFSPS+ RLATSS DRTVRVWD +N
Sbjct: 655 KTSLEEHAAIVTDVRFSPSMPRLATSSFDRTVRVWDADN 693
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449441950|ref|XP_004138745.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 1 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 726 bits (1875), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/699 (62%), Positives = 500/699 (71%), Gaps = 77/699 (11%)
Query: 1 MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
MSQ NWEADKMLDVYI+DYL+KR L A+A+AFQ EGKVS+DPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKATAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSESAASYIESQVIKARE--QQQQQQQQHQKPQQHQQMQVQQLLLQRHA- 117
DIFIARTNEKHS+ AASYIE+Q+IKARE Q QQQQQQ +PQQ Q +Q LL+QRHA
Sbjct: 61 DIFIARTNEKHSDVAASYIETQLIKAREQQQHQQQQQQQTQPQQQQPQHMQMLLMQRHAQ 120
Query: 118 -----------------------QQQQQQQRRDSTQHLNDTGDDL---------RPGFAK 145
QQQQQQRRD Q LN + + PG
Sbjct: 121 QQQQQQQQQQHQQQQQPQQQQQQSQQQQQQRRDGAQLLNGSSNGFVGNDPLMRQNPGSVN 180
Query: 146 AFTTKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTL 205
A TKMYEDRL KLP QRDSLDD +K R DN+ QLLDPNHA++LK+AA SQ SGQ L
Sbjct: 181 ALATKMYEDRL-KLPLQRDSLDDGAMKQRYGDNVGQLLDPNHASILKSAAATSQSSGQVL 239
Query: 206 HG-THGVSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLK 264
HG T G+S QVQ RSQQ P ST ++KTE+NP +NPRAAG EGSL+G+ GSN G N+TLK
Sbjct: 240 HGSTGGMSPQVQPRSQQLPGSTPDIKTEINPVLNPRAAGPEGSLMGIPGSNHGGNNLTLK 299
Query: 265 GWPLTGLDQFRSGLLQQQKSLTQP---YNQLQL------QQLMLQAQQNLASPSANDLES 315
GWPLTGLDQ RSG+LQQQK Q + QLQ+ QQLML AQQNL SPS ND +
Sbjct: 300 GWPLTGLDQLRSGILQQQKPFIQAPQSFPQLQMLTPQHQQQLML-AQQNLTSPSVND-DG 357
Query: 316 RKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDN-DLLIKIQQ----- 369
R+LRML N+R +A+DG SNSVGD+V VGS +Q SP LPRGDN D+++KI+
Sbjct: 358 RRLRMLLNTR---MAKDGLSNSVGDVVPNVGSPLQAGSPLLPRGDNTDMILKIKMAQLQQ 414
Query: 370 ---------QQQQLQHYSHHPLSSQQSQNSNPLLQQQDKILAGGSMTMDGSMSNTFQGND 420
QQQQ Q H LS+QQSQ+SN + QQ+KI GS+TMDGSMSN+F+GND
Sbjct: 415 QQQQQQSSSQQQQQQQLQQHALSNQQSQSSNHNMHQQEKIGGAGSVTMDGSMSNSFRGND 474
Query: 421 QASKNQIGRKRKQAVSSSGPANSSGTANTPG-PTPSSPSSPSTHTPGDVISRPTLQHNGA 479
Q SKNQ GRKRKQ VSSSGPANSSGTANT G S+PS+PSTHTPGD IS P L H+G+
Sbjct: 475 QVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDAISMPALPHSGS 534
Query: 480 SSKSL-LMFGSDGMGSLTSAPNQL---------TDMDRFVDDGSLDDNVESFLSPDDADP 529
SSK L +MF SDG G+ TS NQL DMDR+V+DGSLDDNV+SFLS DD DP
Sbjct: 535 SSKPLTMMFNSDGTGTFTSPSNQLWDDKELELQADMDRYVEDGSLDDNVDSFLSHDDGDP 594
Query: 530 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV 589
RD VGR + KGFTFTE + ASTSKV SCHFS DGKLL +GGHDKKAVLW TE+
Sbjct: 595 RDPVGRCMDGSKGFTFTEVNSVRASTSKVSSCHFSSDGKLLVSGGHDKKAVLWYTENLKP 654
Query: 590 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628
K++LEEH +TDVRFSPS+ RLATSS DRTVRVWD +N
Sbjct: 655 KTSLEEHAAIVTDVRFSPSMPRLATSSFDRTVRVWDADN 693
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356515484|ref|XP_003526430.1| PREDICTED: transcriptional corepressor LEUNIG-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 720 bits (1859), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/688 (61%), Positives = 496/688 (72%), Gaps = 63/688 (9%)
Query: 1 MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
MSQ NWEADKMLDVYI+DYL+KR L ASA+AFQ EGKVS+DPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSESAASYIESQVIKARE------------------------QQQQQQQQ 96
DIFIARTNEKHSE AASYIE+Q+IKARE QQ Q+
Sbjct: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQNQQQPQPQQSQHQQQHMQMQQLLLQRA 120
Query: 97 HQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDSTQHLNDTGDDL--RPGFAKAFTTKMYED 154
Q+ QQ QQ Q Q Q+ +Q QQQQQ RD LN + + L PG A A TKMYE+
Sbjct: 121 QQQQQQQQQQQQQPQSQQQQSQPQQQQQSRDRPHLLNGSANGLVGNPGTANALATKMYEE 180
Query: 155 RLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGTH-GVSQ 213
RL KLP QRDSLDDA K R +NM QLLDPNHA +LK+AA QPSGQ LHG G+S
Sbjct: 181 RL-KLPLQRDSLDDAATKQRFGENMGQLLDPNHAPILKSAAAPGQPSGQVLHGAAGGMSP 239
Query: 214 QVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQ 273
QVQ+R+QQ P ST ++K E++P +NPRA G EGSL+G+ GSN G+ N+TLKGWPLTGL+Q
Sbjct: 240 QVQARTQQLPGSTLDIKGEISPVLNPRAVGPEGSLMGMPGSNPGSNNLTLKGWPLTGLEQ 299
Query: 274 FRSGLLQQQKSLT---QPYNQLQL------QQLMLQAQQNLASPSANDLESRKLRMLHNS 324
RSGLLQQQK QP++QLQ+ QQLML AQQNLASPSA++ ESR+LRML N+
Sbjct: 300 LRSGLLQQQKPFMQAPQPFHQLQMLTPQHQQQLML-AQQNLASPSASE-ESRRLRMLLNN 357
Query: 325 RNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIKIQ------------QQQQ 372
RN+GL +DG SN VGD+VS VGS +Q P PRGD D+L+K++
Sbjct: 358 RNIGLNKDGLSNPVGDVVSNVGSPLQGGGPPFPRGDTDMLVKLKLAQLQQQQQQQSSTNA 417
Query: 373 QLQHYSHHPLSSQQSQNSNPLLQQQDKI--LAGGSMTMDGSMSNTFQGNDQASKNQIGRK 430
Q Q H LS+QQSQ SN + QQDK+ GGS+T+DGSMSN+F+GNDQ SKNQIGRK
Sbjct: 418 QQQQLQQHTLSNQQSQTSNHSMHQQDKVGGGGGGSVTVDGSMSNSFRGNDQVSKNQIGRK 477
Query: 431 RKQAVSSSGPANSSGTANTPG-PTPSSPSSPSTHTPGDVISRPTLQHNGASSKSLLMFGS 489
RKQ SSSGPANSSGTANT G S+PS+PSTHTPGDVIS P L H+G+SSK L+MF +
Sbjct: 478 RKQPGSSSGPANSSGTANTTGPSPSSAPSTPSTHTPGDVISMPALPHSGSSSKPLMMFST 537
Query: 490 DGMGSLTSAPNQL---------TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVG 540
DG G+LTS NQL D+DRFV+DGSLD+NVESFLS DD DPRD VGR +V
Sbjct: 538 DGTGTLTSPSNQLWDDKDLELQADVDRFVEDGSLDENVESFLSHDDTDPRDTVGRCMDVS 597
Query: 541 KGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWI 600
KGFTF++ + ASTSKV CHFS DGKLLA+GGHDKK VLW T+S K+TLEEH+ I
Sbjct: 598 KGFTFSDVNSVRASTSKVSCCHFSSDGKLLASGGHDKKVVLWYTDSLKQKATLEEHSSLI 657
Query: 601 TDVRFSPSLSRLATSSADRTVRVWDTEN 628
TDVRFSPS+ RLATSS D+TVRVWD +N
Sbjct: 658 TDVRFSPSMPRLATSSFDKTVRVWDVDN 685
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357466351|ref|XP_003603460.1| NAD(P)H-quinone oxidoreductase subunit [Medicago truncatula] gi|355492508|gb|AES73711.1| NAD(P)H-quinone oxidoreductase subunit [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 703 bits (1814), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/741 (56%), Positives = 493/741 (66%), Gaps = 116/741 (15%)
Query: 1 MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
MSQ NWEADKMLDVYI+DYL+KR L ASA+AFQ EGKVS+DPVAIDAPGGFLFEWWSVFW
Sbjct: 1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60
Query: 61 DIFIARTNEKHSESAASYIESQVIKARE-----------------------------QQQ 91
DIFIARTNEKHSE AASYIE+Q+IKARE QQ
Sbjct: 61 DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQPQPQQSQHAQQQQQQHMQMQQ 120
Query: 92 QQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDSTQHLNDTGDDL--RPGFAKAFTT 149
Q+H + QQ QQ QQ Q Q QQQQ RD T LN + + L P A A T
Sbjct: 121 LLMQRHAQQQQQQQQHQQQPQSQPQQPQPQQQQNRDRTHLLNGSANGLAGNPATANAIAT 180
Query: 150 KMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGTH 209
KMYE+RLK P QRDSLDDA +K R +NM QLLDPNHA++LK+AA G QPSGQ LHGT
Sbjct: 181 KMYEERLKGPP-QRDSLDDAAMKQRFGENMGQLLDPNHASILKSAAAGGQPSGQVLHGTA 239
Query: 210 -GVSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPL 268
G+S QVQ+RSQQ P ST ++K+E+NP +NPRAAG EGSL+G+ GSNQG N+TLKGWPL
Sbjct: 240 GGMSPQVQARSQQLPGSTTDIKSEINPVLNPRAAGPEGSLLGISGSNQGNNNLTLKGWPL 299
Query: 269 TGLDQFRSGLLQQQKSLT---QPYNQLQL------QQLMLQAQQNLASPSANDLESRKLR 319
TGL+Q RSGLLQQQK QP++QLQ+ QQLML AQQ+LASPSA++ ESR+LR
Sbjct: 300 TGLEQLRSGLLQQQKPYMQAPQPFHQLQMLTPQHQQQLML-AQQSLASPSASE-ESRRLR 357
Query: 320 MLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIKIQQQ--------- 370
ML N+RN+GL +DG SN GD++S VGS + P PRGD D+L+K++
Sbjct: 358 MLLNNRNIGLNKDGLSNPGGDMLSNVGSPLHGGGPPFPRGDTDMLMKLKLAQLQQQQQQQ 417
Query: 371 --------QQQLQHYSHHPLSSQQSQNSNPLLQQQDKI-LAGGSMTMDGSMSNTFQGNDQ 421
Q Q H LS+QQSQ SN + QQDK+ GGS+TMDGSMSN+++GNDQ
Sbjct: 418 QHQQQSSINAQQQQLQQHALSNQQSQTSNHSMHQQDKVGGGGGSVTMDGSMSNSYRGNDQ 477
Query: 422 --------------------------------------------ASKNQIGRKRKQAVSS 437
SKNQ+GRKRKQ VSS
Sbjct: 478 IKVQPTEQSEEVLMFCGIPPFACFWSKDEILNDGWLHSPIFAIVVSKNQMGRKRKQPVSS 537
Query: 438 SGPANSSGTANTPG-PTPSSPSSPSTHTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLT 496
SGPANSSGTANT G S+PS+PSTHTPGD +S P L HN +SSK L+MF +DG G+LT
Sbjct: 538 SGPANSSGTANTAGPSPSSAPSTPSTHTPGDAVSMPALPHNSSSSKPLMMFSTDGTGTLT 597
Query: 497 SAPNQL---------TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTE 547
S NQL D+DRFVDDGSLDDNVESFLS DD DPRD VGR +V KGFTF++
Sbjct: 598 SPSNQLWDDKDLELKADVDRFVDDGSLDDNVESFLSQDDTDPRDPVGRCMDVSKGFTFSD 657
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 607
+ AS+SK+ CHFS DGKLLA+GGHDKKAV+W +S K+ LEEH+ ITDVRFS
Sbjct: 658 VNSVRASSSKIACCHFSSDGKLLASGGHDKKAVIWYADSLKQKAILEEHSALITDVRFSA 717
Query: 608 SLSRLATSSADRTVRVWDTEN 628
S+ RLATSS D+TVRVWD +N
Sbjct: 718 SMPRLATSSFDKTVRVWDVDN 738
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 655 | ||||||
| RGD|1310215 | 143 | Taf5l "TAF5-like RNA polymeras | 0.117 | 0.538 | 0.415 | 1.5e-09 | |
| ZFIN|ZDB-GENE-031118-54 | 490 | poc1b "POC1 centriolar protein | 0.158 | 0.212 | 0.355 | 4.6e-09 | |
| ASPGD|ASPL0000031743 | 954 | AN8505 [Emericella nidulans (t | 0.117 | 0.080 | 0.428 | 2.1e-08 | |
| ASPGD|ASPL0000006214 | 434 | AN6385 [Emericella nidulans (t | 0.122 | 0.184 | 0.387 | 2.8e-08 | |
| UNIPROTKB|G3V1X0 | 436 | POC1B "POC1 centriolar protein | 0.146 | 0.220 | 0.363 | 2.8e-08 | |
| UNIPROTKB|Q5RD06 | 451 | POC1B "POC1 centriolar protein | 0.146 | 0.212 | 0.363 | 3e-08 | |
| UNIPROTKB|G4NFU5 | 526 | MGG_08708 "WD repeat-containin | 0.125 | 0.155 | 0.409 | 3.1e-08 | |
| UNIPROTKB|Q8TC44 | 478 | POC1B "POC1 centriolar protein | 0.146 | 0.200 | 0.363 | 3.4e-08 | |
| UNIPROTKB|F1MRF3 | 476 | WDSUB1 "Uncharacterized protei | 0.134 | 0.184 | 0.344 | 4.3e-08 | |
| UNIPROTKB|G3MZA8 | 477 | WDSUB1 "Uncharacterized protei | 0.134 | 0.184 | 0.344 | 4.3e-08 |
| RGD|1310215 Taf5l "TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 148 (57.2 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 32/77 (41%), Positives = 43/77 (55%)
Query: 549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS 608
+L V S FSP+GK LA+ G D++ LW S T+ L HT IT + FSP
Sbjct: 16 RLFTGHRGPVLSLSFSPNGKYLASAGEDQRLKLWDLASGTLFKELRGHTDSITSLAFSPD 75
Query: 609 LSRLATSSADRTVRVWD 625
+A++S D +VRVWD
Sbjct: 76 SGLIASASMDNSVRVWD 92
|
|
| ZFIN|ZDB-GENE-031118-54 poc1b "POC1 centriolar protein homolog B (Chlamydomonas)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 166 (63.5 bits), Expect = 4.6e-09, P = 4.6e-09
Identities = 38/107 (35%), Positives = 52/107 (48%)
Query: 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 606
E + A T+ V S HFS DG+ L T DK +W E +L HT W+ RFS
Sbjct: 94 ESTVFKAHTASVRSVHFSRDGQRLVTASDDKSVKVWGVERKKFLYSLNRHTNWVRCARFS 153
Query: 607 PSLSRLATSSADRTVRVWDTENVRKLTFICCY--KCIFVS-TAIGSC 650
P +A+ DRTVR+WDT + + + Y FV + G+C
Sbjct: 154 PDGRLIASCGDDRTVRLWDTSSHQCINIFTDYGGSATFVDFNSSGTC 200
|
|
| ASPGD|ASPL0000031743 AN8505 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 164 (62.8 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 33/77 (42%), Positives = 46/77 (59%)
Query: 549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS 608
Q + + V S FSPDG+LLA+G DK LW + +++ TL H+ W+ V FSP
Sbjct: 731 QTLEGHSGWVLSVAFSPDGRLLASGSFDKTVRLWDPATGSLQQTLRGHSNWVRSVAFSPD 790
Query: 609 LSRLATSSADRTVRVWD 625
LA+ S D+TVR+WD
Sbjct: 791 GRLLASGSFDKTVRLWD 807
|
|
| ASPGD|ASPL0000006214 AN6385 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 158 (60.7 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 31/80 (38%), Positives = 49/80 (61%)
Query: 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 606
E Q + + +E+ FSPDG+LLA+G +D LW S +K TLE H+ + V FS
Sbjct: 33 ELQTLEGHSDWIETVTFSPDGRLLASGSNDTTIKLWDPASGGLKQTLEGHSSSVQSVAFS 92
Query: 607 PSLSRLATSSADRTVRVWDT 626
P+ LA+ S+D T+++W++
Sbjct: 93 PNGQLLASGSSDTTIKLWNS 112
|
|
| UNIPROTKB|G3V1X0 POC1B "POC1 centriolar protein homolog B" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 158 (60.7 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 36/99 (36%), Positives = 50/99 (50%)
Query: 530 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV 589
RDR R K F+EF+ A T+ V S FS DG+ LAT DK +W
Sbjct: 38 RDRTVRLWIPDKRGKFSEFK---AHTAPVRSVDFSADGQFLATASEDKSIKVWSMYRQRF 94
Query: 590 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628
+L HT W+ +FSP + + S D+T+++WDT N
Sbjct: 95 LYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTN 133
|
|
| UNIPROTKB|Q5RD06 POC1B "POC1 centriolar protein homolog B" [Pongo abelii (taxid:9601)] | Back alignment and assigned GO terms |
|---|
Score = 158 (60.7 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 36/99 (36%), Positives = 50/99 (50%)
Query: 530 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV 589
RDR R K F+EF+ A T+ V S FS DG+ LAT DK +W
Sbjct: 80 RDRTVRLWIPDKRGKFSEFK---AHTAPVRSVDFSADGQFLATASEDKSIKVWSMYRQRF 136
Query: 590 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628
+L HT W+ +FSP + + S D+T+++WDT N
Sbjct: 137 LYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTN 175
|
|
| UNIPROTKB|G4NFU5 MGG_08708 "WD repeat-containing protein" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 159 (61.0 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 34/83 (40%), Positives = 46/83 (55%)
Query: 551 IPASTSKVESCHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 609
IP + FSP LATG D A +W E+ T K TL+ H W+ V +SP
Sbjct: 148 IPGHGEPILCAQFSPASSARLATGSGDNTARIWDAETGTPKHTLKGHAGWVLGVSWSPDG 207
Query: 610 SRLATSSADRTVRVWDTENVRKL 632
+RLAT S D+TVR+WD E +++
Sbjct: 208 TRLATCSMDKTVRIWDPETGKQV 230
|
|
| UNIPROTKB|Q8TC44 POC1B "POC1 centriolar protein homolog B" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 158 (60.7 bits), Expect = 3.4e-08, P = 3.4e-08
Identities = 36/99 (36%), Positives = 50/99 (50%)
Query: 530 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV 589
RDR R K F+EF+ A T+ V S FS DG+ LAT DK +W
Sbjct: 80 RDRTVRLWIPDKRGKFSEFK---AHTAPVRSVDFSADGQFLATASEDKSIKVWSMYRQRF 136
Query: 590 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628
+L HT W+ +FSP + + S D+T+++WDT N
Sbjct: 137 LYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTN 175
|
|
| UNIPROTKB|F1MRF3 WDSUB1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 157 (60.3 bits), Expect = 4.3e-08, P = 4.3e-08
Identities = 31/90 (34%), Positives = 52/90 (57%)
Query: 542 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWIT 601
GF + + V +C FS DG++L +G DK +++ T + + TL +HT+++T
Sbjct: 226 GFELKYKSTLTGHCAPVLACAFSHDGQMLVSGSVDKSVIVYDTNTENILHTLTQHTRYVT 285
Query: 602 DVRFSPSLSRLATSSADRTVRVW--DTENV 629
F+P++ LAT S D+TV +W DTE +
Sbjct: 286 TCAFAPNILLLATGSMDKTVNIWQFDTETL 315
|
|
| UNIPROTKB|G3MZA8 WDSUB1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 157 (60.3 bits), Expect = 4.3e-08, P = 4.3e-08
Identities = 31/90 (34%), Positives = 52/90 (57%)
Query: 542 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWIT 601
GF + + V +C FS DG++L +G DK +++ T + + TL +HT+++T
Sbjct: 226 GFELKYKSTLTGHCAPVLACAFSHDGQMLVSGSVDKSVIVYDTNTENILHTLTQHTRYVT 285
Query: 602 DVRFSPSLSRLATSSADRTVRVW--DTENV 629
F+P++ LAT S D+TV +W DTE +
Sbjct: 286 TCAFAPNILLLATGSMDKTVNIWQFDTETL 315
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 655 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-19 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-18 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 7e-16 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 7e-15 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 7e-15 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 7e-14 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-10 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 3e-10 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 4e-10 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 5e-10 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 8e-10 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-08 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-08 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 5e-08 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-06 | |
| pfam08513 | 27 | pfam08513, LisH, LisH | 6e-06 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 8e-06 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 5e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 7e-05 | |
| smart00667 | 34 | smart00667, LisH, Lissencephaly type-1-like homolo | 6e-04 | |
| pfam13779 | 820 | pfam13779, DUF4175, Domain of unknown function (DU | 0.001 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 0.001 | |
| pfam13779 | 820 | pfam13779, DUF4175, Domain of unknown function (DU | 0.002 | |
| pfam13779 | 820 | pfam13779, DUF4175, Domain of unknown function (DU | 0.004 | |
| pfam07321 | 152 | pfam07321, YscO, Type III secretion protein YscO | 0.004 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 3e-19
Identities = 30/74 (40%), Positives = 44/74 (59%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
TS V S FSPDG++L++ DK +W E+ +TL HT W+ V FSP + +A+
Sbjct: 93 TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVAS 152
Query: 615 SSADRTVRVWDTEN 628
SS D T+++WD
Sbjct: 153 SSQDGTIKLWDLRT 166
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 2e-18
Identities = 32/82 (39%), Positives = 45/82 (54%)
Query: 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 610
+ T V FSPDGKLLATG D +W E+ + TL+ HT + DV S +
Sbjct: 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGT 64
Query: 611 RLATSSADRTVRVWDTENVRKL 632
LA+ S+D+T+R+WD E +
Sbjct: 65 YLASGSSDKTIRLWDLETGECV 86
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 7e-16
Identities = 31/82 (37%), Positives = 42/82 (51%)
Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
T + + V S FSPDG LLA+G D +W + TL HT +T +
Sbjct: 208 TGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSL 267
Query: 604 RFSPSLSRLATSSADRTVRVWD 625
+SP RLA+ SAD T+R+WD
Sbjct: 268 AWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 7e-15
Identities = 35/101 (34%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T V S DG LA+G DK LW E+ TL HT +++ V FSP L++
Sbjct: 51 TGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSS 110
Query: 615 SSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655
SS D+T++VWD E T C + + S F+P
Sbjct: 111 SSRDKTIKVWDVE-----TGKCLTTLRGHTDWVNSVAFSPD 146
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 7e-15
Identities = 28/83 (33%), Positives = 40/83 (48%)
Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
T + T V S FSPDG +A+ D LW + +TL HT + V
Sbjct: 124 TGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSV 183
Query: 604 RFSPSLSRLATSSADRTVRVWDT 626
FSP +L +SS+D T+++WD
Sbjct: 184 AFSPDGEKLLSSSSDGTIKLWDL 206
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 7e-14
Identities = 29/89 (32%), Positives = 38/89 (42%)
Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
T + T +V S FSPDG+ L + D LW + TL H + V
Sbjct: 166 TGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSV 225
Query: 604 RFSPSLSRLATSSADRTVRVWDTENVRKL 632
FSP LA+ S D T+RVWD +
Sbjct: 226 AFSPDGYLLASGSEDGTIRVWDLRTGECV 254
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.2 bits (152), Expect = 2e-10
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES--FTVKSTLEEHTQWIT 601
+ + + + +S V S FSPDGKLLA+G D LW E+ TL+ H ++
Sbjct: 273 SSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVS 332
Query: 602 DVRFSPSLSRLATS-SADRTVRVWDTENVRKLTFI 635
+ FSP S L + S D T+R+WD + L +
Sbjct: 333 SLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTL 367
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.8 bits (151), Expect = 3e-10
Identities = 42/160 (26%), Positives = 64/160 (40%), Gaps = 6/160 (3%)
Query: 480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDD---ADPRDRVGRS 536
+ LL SDG L N + + + SPD + +
Sbjct: 76 DGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGT 135
Query: 537 AEVGKGFTFTEFQ-LIPASTSKVESCHFSPDGKLLATGGH-DKKAVLWCTESFTVKSTLE 594
++ T + + + V S FSPDGKLLA+G D LW + STL
Sbjct: 136 VKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLA 195
Query: 595 EHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENVRKLT 633
HT ++ + FSP +A+ S+D T+R+WD + L
Sbjct: 196 GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLR 235
|
Length = 466 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 4e-10
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625
S + TL+ HT +T V FSP LA+ S D T+++WD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.0 bits (149), Expect = 5e-10
Identities = 31/71 (43%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTV 621
FSPDG LLA+G D LW S + TL H+ + V FSP LA+ S+D TV
Sbjct: 249 FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTV 308
Query: 622 RVWDTENVRKL 632
R+WD E + L
Sbjct: 309 RLWDLETGKLL 319
|
Length = 466 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 8e-10
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625
+ TL+ HT +T V FSP + LA+ S D TVRVWD
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 1e-08
Identities = 20/47 (42%), Positives = 26/47 (55%)
Query: 590 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFIC 636
+ TL+ HT +T V FSP LAT S D T++VWD E L +
Sbjct: 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLK 48
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.0 bits (136), Expect = 2e-08
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS 615
S V S FSPDG+++++G D LW + ++ L+ HT +T + FSP LA+
Sbjct: 371 SNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASG 430
Query: 616 SADRTVRVWDTENVRK 631
S+D T+R+WD + K
Sbjct: 431 SSDNTIRLWDLKTSLK 446
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.5 bits (132), Expect = 5e-08
Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 544 TFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLW-CTESFTVKSTLEEHTQWIT 601
T + T V S FSPDG L+A+G D LW + ++STL H+ +
Sbjct: 187 TGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVV 246
Query: 602 DVRFSPSLSRLATSSADRTVRVWDTENVRKLTFI 635
FSP S LA+ S+D T+R+WD + L
Sbjct: 247 SS-FSPDGSLLASGSSDGTIRLWDLRSSSSLLRT 279
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.1 bits (118), Expect = 2e-06
Identities = 30/88 (34%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 551 IPASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 609
+ V S FSPDG LL +GG D LW + TLE H+ + V FSP
Sbjct: 324 LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVSFSPDG 382
Query: 610 SRLATSSADRTVRVWDTENVRKLTFICC 637
+++ S D TVR+WD L +
Sbjct: 383 RVVSSGSTDGTVRLWDLSTGSLLRNLDG 410
|
Length = 466 |
| >gnl|CDD|149534 pfam08513, LisH, LisH | Back alignment and domain information |
|---|
Score = 42.7 bits (102), Expect = 6e-06
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 10 KMLDVYIYDYLLKRKLHASAKAFQTEG 36
+ L+ IYDYL+K +A+AF E
Sbjct: 1 EELNRLIYDYLVKSGYKETAEAFAKES 27
|
The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex. Length = 27 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.5 bits (114), Expect = 8e-06
Identities = 31/141 (21%), Positives = 48/141 (34%), Gaps = 11/141 (7%)
Query: 497 SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS 556
S + +++ ++ SL S S
Sbjct: 13 SKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGH------ED 66
Query: 557 KVESCHFSPDGKLLATGGHDKKAVLWC--TESFTVKSTLEEHTQWITDVRF-SPSLSRLA 613
+ S FSPDG+LL +G D LW +KS H ++ + SP + +
Sbjct: 67 SITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSIL 126
Query: 614 T--SSADRTVRVWDTENVRKL 632
SS D TV++WD KL
Sbjct: 127 LASSSLDGTVKLWDLSTPGKL 147
|
Length = 466 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 5e-05
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582
+ + + T V S FSPDGK LA+G D LW
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 7e-05
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582
+ T V S FSPDG LLA+G D +W
Sbjct: 7 LKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|128913 smart00667, LisH, Lissencephaly type-1-like homology motif | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 6e-04
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 10 KMLDVYIYDYLLKRKLHASAKAFQTEGKVS 39
L+ I +YLL+ +A+ Q E +S
Sbjct: 4 SELNRLILEYLLRNGYEETAETLQKESGLS 33
|
Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. Length = 34 |
| >gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 0.001
Identities = 24/82 (29%), Positives = 27/82 (32%), Gaps = 8/82 (9%)
Query: 88 EQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDSTQHLNDTGDDLRPGFAKAF 147
+Q Q Q Q Q QQ QQ Q QQ Q Q Q + Q L D R G
Sbjct: 625 QQGQGGQGQGQPGQQGQQGQGQQQGQQGQGGQGGQGSLAERQQALRDELGRQRGGLPGMG 684
Query: 148 TTKMYEDRLKKLPFQRDSLDDA 169
RD+L A
Sbjct: 685 GEAGEAA--------RDALGRA 698
|
Length = 820 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.001
Identities = 15/51 (29%), Positives = 18/51 (35%)
Query: 81 SQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDSTQH 131
SQ Q QQ QQ Q + Q + Q QQQQ+ Q
Sbjct: 224 SQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQA 274
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.002
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 6/66 (9%)
Query: 87 REQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQ------QQQRRDSTQHLNDTGDDLR 140
+ Q QQ QQ Q QQ QQ Q Q A++QQ +QR + G+ R
Sbjct: 633 QGQPGQQGQQGQGQQQGQQGQGGQGGQGSLAERQQALRDELGRQRGGLPGMGGEAGEAAR 692
Query: 141 PGFAKA 146
+A
Sbjct: 693 DALGRA 698
|
Length = 820 |
| >gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175) | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.004
Identities = 11/44 (25%), Positives = 16/44 (36%)
Query: 87 REQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDSTQ 130
R+ Q+Q Q + Q Q Q QQ Q Q++
Sbjct: 609 RDLQEQFNAQRGEQQGQQGQGGQGQGQPGQQGQQGQGQQQGQQG 652
|
Length = 820 |
| >gnl|CDD|148750 pfam07321, YscO, Type III secretion protein YscO | Back alignment and domain information |
|---|
Score = 37.8 bits (88), Expect = 0.004
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 62 IFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQ 121
+ + R NE E + + ++ R++ +Q +QQ Q+ ++ Q + +L Q A+ Q
Sbjct: 76 VGLLRENEASLEQQLAEAKQRLEAERQRLRQARQQLQEARK-AQEKFAELARQEQAEAQA 134
Query: 122 QQQRR 126
Q+Q
Sbjct: 135 QRQYL 139
|
This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis. Length = 152 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 655 | |||
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.86 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.85 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.84 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.83 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.83 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.81 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.8 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.79 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.78 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.77 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.76 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.76 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.76 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.75 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.75 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.74 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.74 | |
| PTZ00421 | 493 | coronin; Provisional | 99.73 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.72 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.72 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.71 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.7 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.7 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.7 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.69 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.68 | |
| PTZ00420 | 568 | coronin; Provisional | 99.68 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.67 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.66 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.65 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.65 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.64 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.64 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.64 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.64 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.63 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.62 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.62 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.62 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.62 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.61 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.61 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.59 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.59 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.58 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.58 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.58 | |
| PTZ00421 | 493 | coronin; Provisional | 99.57 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.57 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.56 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.56 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.55 | |
| PTZ00420 | 568 | coronin; Provisional | 99.55 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.55 | |
| KOG4594 | 354 | consensus Sequence-specific single-stranded-DNA-bi | 99.55 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.54 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.54 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.54 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.54 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.53 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.53 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.53 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.53 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.52 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.52 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.52 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.51 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.51 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.51 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.51 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.5 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.5 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.5 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.49 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.49 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.49 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.49 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.46 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.46 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.46 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.45 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.44 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.43 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.43 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.43 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.42 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.42 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.41 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.4 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.4 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.4 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.4 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.4 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.39 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.39 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.37 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.37 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.37 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.36 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.35 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.35 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.35 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.35 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.34 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.33 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.33 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.33 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.33 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.33 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.32 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.32 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.32 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.31 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.3 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.3 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.29 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.28 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.28 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.28 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.27 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.26 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.26 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.26 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.25 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.25 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.24 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.23 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.23 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.23 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.22 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.21 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.18 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.17 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.17 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.15 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.15 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.14 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.14 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.13 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.13 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.12 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.09 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.08 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.08 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.07 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.05 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.05 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.04 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.02 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.02 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.0 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.0 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 98.99 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.99 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 98.99 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 98.97 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 98.96 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 98.95 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 98.95 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 98.94 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 98.93 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 98.93 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 98.91 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 98.91 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 98.91 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 98.89 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 98.89 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 98.87 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 98.86 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 98.86 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 98.85 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 98.84 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 98.83 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 98.82 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 98.81 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 98.79 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 98.79 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 98.77 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 98.76 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 98.76 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 98.75 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 98.73 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 98.72 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 98.71 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 98.7 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 98.69 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.67 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 98.66 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.65 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 98.65 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 98.63 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 98.62 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 98.6 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 98.58 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 98.58 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 98.57 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 98.52 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 98.52 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 98.52 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 98.51 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 98.48 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 98.47 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 98.47 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 98.46 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 98.46 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.45 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 98.45 | |
| PF08513 | 27 | LisH: LisH; InterPro: IPR013720 The LisH motif is | 98.45 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 98.45 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 98.43 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 98.42 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 98.42 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 98.42 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.4 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 98.39 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 98.36 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 98.36 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 98.3 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 98.29 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.29 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.22 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 98.22 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 98.18 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.17 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 98.17 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 98.16 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 98.15 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 98.13 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.08 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.08 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 98.08 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 98.08 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.07 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 98.06 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 98.06 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.05 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 98.03 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 98.01 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 98.0 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 97.99 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 97.98 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 97.98 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 97.88 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 97.85 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.84 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 97.8 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 97.8 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 97.8 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 97.79 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 97.78 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 97.74 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 97.74 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.73 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 97.62 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 97.61 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 97.6 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 97.57 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 97.54 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.53 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.45 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 97.44 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 97.41 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 97.41 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 97.41 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 97.4 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 97.36 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 97.34 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 97.31 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 97.27 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 97.24 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 97.2 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 97.18 | |
| smart00667 | 34 | LisH Lissencephaly type-1-like homology motif. Alp | 97.13 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 97.1 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 97.1 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 97.1 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 97.06 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 97.02 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 96.99 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 96.93 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 96.84 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 96.82 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 96.81 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 96.81 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 96.79 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 96.74 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 96.73 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 96.69 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 96.68 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 96.64 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.61 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 96.58 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 96.54 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 96.42 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 96.35 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 96.26 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 96.26 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.26 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 96.22 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 96.17 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 96.14 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 96.1 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 96.09 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 95.96 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 95.91 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 95.9 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 95.87 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 95.87 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 95.84 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 95.64 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 95.58 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 95.53 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 95.2 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 95.02 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 94.9 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 94.87 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 94.82 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 94.66 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 94.51 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 94.41 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 94.39 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 94.33 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 94.32 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 94.3 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 94.19 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 94.15 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 93.96 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 93.94 | |
| KOG3598 | 2220 | consensus Thyroid hormone receptor-associated prot | 93.51 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 93.46 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 93.32 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 93.3 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 93.29 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 93.09 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 92.89 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 92.84 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 92.75 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 92.41 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 92.0 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 91.96 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 91.93 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 91.51 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 91.09 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 90.85 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 90.82 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 90.73 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 90.67 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 90.66 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 90.47 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 90.24 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 89.96 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 89.96 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 89.73 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 89.22 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 89.13 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 88.47 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 88.42 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 88.34 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 88.12 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 88.03 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 87.64 | |
| PRK10350 | 145 | hypothetical protein; Provisional | 86.76 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 86.18 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 85.09 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 84.74 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 84.68 | |
| PF08581 | 79 | Tup_N: Tup N-terminal; InterPro: IPR013890 The N-t | 84.5 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 84.48 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 84.46 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 84.16 | |
| PF11498 | 468 | Activator_LAG-3: Transcriptional activator LAG-3; | 83.45 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 83.43 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 83.11 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 82.6 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 82.32 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 81.37 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 81.11 | |
| PF11498 | 468 | Activator_LAG-3: Transcriptional activator LAG-3; | 80.42 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 80.22 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 80.14 |
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-21 Score=205.96 Aligned_cols=176 Identities=24% Similarity=0.279 Sum_probs=131.4
Q ss_pred CCceeccCCCCceEEEEecCCCC--------cccccCcccCCC--CcEEEeccCCCcEEEEecCCCC-------------
Q 006229 471 RPTLQHNGASSKSLLMFGSDGMG--------SLTSAPNQLTDM--DRFVDDGSLDDNVESFLSPDDA------------- 527 (655)
Q Consensus 471 ~~~~~~s~S~d~s~l~ws~dg~~--------~lasss~~l~~~--~~~LasGS~D~tV~vW~s~d~~------------- 527 (655)
+...+++++.++.+.+|+...-. .-.+....|.+. +.-+++|+.|++|++|......
T Consensus 186 ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs 265 (459)
T KOG0272|consen 186 DSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVS 265 (459)
T ss_pred CCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhhe
Confidence 44566666666666666655410 111122234444 2356777777777777443321
Q ss_pred -------------CCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec
Q 006229 528 -------------DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE 594 (655)
Q Consensus 528 -------------d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~ 594 (655)
...|...++||+.+. .++--..||...|.+|+|++||.+++|||.|..-||||+++|+++..|.
T Consensus 266 ~VafHPsG~~L~TasfD~tWRlWD~~tk---~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~ 342 (459)
T KOG0272|consen 266 RVAFHPSGKFLGTASFDSTWRLWDLETK---SELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLA 342 (459)
T ss_pred eeeecCCCceeeecccccchhhcccccc---hhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEec
Confidence 112333355555443 5666678999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEec
Q 006229 595 EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAP 654 (655)
Q Consensus 595 gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P 654 (655)
||...|.+|.|+|+|-.|||||.|+++||||++..+++.++.+|.+.|. .+.|.|
T Consensus 343 gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS-----~Vk~~p 397 (459)
T KOG0272|consen 343 GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVS-----QVKYSP 397 (459)
T ss_pred ccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhh-----heEecc
Confidence 9999999999999999999999999999999999999999999987654 555555
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-21 Score=204.82 Aligned_cols=173 Identities=20% Similarity=0.293 Sum_probs=154.5
Q ss_pred ceeccCCCCceEEEEecCCCCc--------ccccCcccCCCCcEEEeccCCCcEEEEecCCCC-----------------
Q 006229 473 TLQHNGASSKSLLMFGSDGMGS--------LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDA----------------- 527 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~~--------lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~----------------- 527 (655)
.-+++++.|+++.+|..++... ..+...+|.+.++||.++|+|.+-++|+.....
T Consensus 232 ~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf 311 (459)
T KOG0272|consen 232 LNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAF 311 (459)
T ss_pred cceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEe
Confidence 4667888999999999988322 345556889999999999999999999887654
Q ss_pred ---------CCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCC
Q 006229 528 ---------DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ 598 (655)
Q Consensus 528 ---------d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~ 598 (655)
.+-|.+.++||+.++ +++-.+.+|...|.+|+|+|+|-.|||||.|+++||||++..+++.++.+|.+
T Consensus 312 ~~DGSL~~tGGlD~~~RvWDlRtg---r~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n 388 (459)
T KOG0272|consen 312 QPDGSLAATGGLDSLGRVWDLRTG---RCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN 388 (459)
T ss_pred cCCCceeeccCccchhheeecccC---cEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccc
Confidence 455777899999988 78888899999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeecee
Q 006229 599 WITDVRFSP-SLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIG 648 (655)
Q Consensus 599 ~ItsVafsP-dg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vs 648 (655)
.|+.|+|+| .|.+|+|+|.|++|+||..+++.++..+.+|...+.+++|+
T Consensus 389 lVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis 439 (459)
T KOG0272|consen 389 LVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDIS 439 (459)
T ss_pred hhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEec
Confidence 999999999 78899999999999999999999999999999988876653
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.5e-21 Score=212.37 Aligned_cols=163 Identities=18% Similarity=0.258 Sum_probs=141.2
Q ss_pred CCCCceeccCCCCceEEEEecCCCCcc--------cccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccC
Q 006229 469 ISRPTLQHNGASSKSLLMFGSDGMGSL--------TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVG 540 (655)
Q Consensus 469 ~s~~~~~~s~S~d~s~l~ws~dg~~~l--------asss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~ 540 (655)
.++..++.++|-|.++..|+.+....+ -+...+|.+.+.+++++|.|++.++|...
T Consensus 460 sPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d---------------- 523 (707)
T KOG0263|consen 460 SPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTD---------------- 523 (707)
T ss_pred cccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecc----------------
Confidence 455588999999999999999874322 23345678889999999999999999221
Q ss_pred CCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCc
Q 006229 541 KGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620 (655)
Q Consensus 541 ~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~Dgt 620 (655)
...+.+.+.+|-+.|.||.|+|++.|++|||.|++||+||+.+|..++.|.||++.|++|+|||+|++|+||+.|+.
T Consensus 524 ---~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~ 600 (707)
T KOG0263|consen 524 ---HNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGL 600 (707)
T ss_pred ---cCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCc
Confidence 13577889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 621 VRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 621 VrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
|+|||+.+++.+..+.+|... |+++.|+.+
T Consensus 601 I~iWDl~~~~~v~~l~~Ht~t-----i~SlsFS~d 630 (707)
T KOG0263|consen 601 IKIWDLANGSLVKQLKGHTGT-----IYSLSFSRD 630 (707)
T ss_pred EEEEEcCCCcchhhhhcccCc-----eeEEEEecC
Confidence 999999999999999998544 456666643
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.2e-20 Score=184.12 Aligned_cols=175 Identities=17% Similarity=0.265 Sum_probs=139.9
Q ss_pred CCceeccCCCCceEEEEecCCC-CcccccCcccCCC------------CcEEEeccCCCcEEEEecCCCC----------
Q 006229 471 RPTLQHNGASSKSLLMFGSDGM-GSLTSAPNQLTDM------------DRFVDDGSLDDNVESFLSPDDA---------- 527 (655)
Q Consensus 471 ~~~~~~s~S~d~s~l~ws~dg~-~~lasss~~l~~~------------~~~LasGS~D~tV~vW~s~d~~---------- 527 (655)
.+..+.+.++|+++++|..... ..+.....+|.+| +.|..++|+|+++++|+...+.
T Consensus 27 ~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~ 106 (315)
T KOG0279|consen 27 NSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTK 106 (315)
T ss_pred CCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCC
Confidence 3467888899999999988763 2333334444444 4566799999999999888764
Q ss_pred ----------------CCCCccccccccCCCceeeeEEeecC--CCCCeeEEEEcCC--CCEEEEEeCCCcEEEEeCCCC
Q 006229 528 ----------------DPRDRVGRSAEVGKGFTFTEFQLIPA--STSKVESCHFSPD--GKLLATGGHDKKAVLWCTESF 587 (655)
Q Consensus 528 ----------------d~~d~~~~l~d~~~~~t~~~v~~l~g--H~~~V~sl~fSpd--G~lLaSgs~DgtVrIWDl~t~ 587 (655)
..+|.++++|++... +.-++.. |.+-|+||+|+|. ..+|+++|.|++|||||+++.
T Consensus 107 dVlsva~s~dn~qivSGSrDkTiklwnt~g~----ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~ 182 (315)
T KOG0279|consen 107 DVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV----CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNC 182 (315)
T ss_pred ceEEEEecCCCceeecCCCcceeeeeeeccc----EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCc
Confidence 345666777776554 2222222 3778999999996 679999999999999999999
Q ss_pred eEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 588 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 588 ~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
+...++.||++.|+.|.++|||..+++|+.||.+.+||++.++++..+.+... |.+|+|+|+
T Consensus 183 ~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~------v~sl~fspn 244 (315)
T KOG0279|consen 183 QLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDI------VNSLCFSPN 244 (315)
T ss_pred chhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCe------EeeEEecCC
Confidence 99999999999999999999999999999999999999999999888765533 568899885
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.9e-20 Score=192.88 Aligned_cols=178 Identities=19% Similarity=0.243 Sum_probs=140.1
Q ss_pred ceeccCCCCceEEEEecCCCCcc-------cccCcccCCCCcEEEeccCCCcEEEEecCCCCC-----------------
Q 006229 473 TLQHNGASSKSLLMFGSDGMGSL-------TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDAD----------------- 528 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~~l-------asss~~l~~~~~~LasGS~D~tV~vW~s~d~~d----------------- 528 (655)
..+++++.|+++++|+......+ ......-++.+.++++||.|++|++|...++.-
T Consensus 218 r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lals 297 (480)
T KOG0271|consen 218 RRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALS 297 (480)
T ss_pred cceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeecc
Confidence 47788888999999999773221 111122366678999999999999998888640
Q ss_pred --CC------Cccc--------------------------cccccCCCce---------eeeEEeecCCCCCeeEEEEcC
Q 006229 529 --PR------DRVG--------------------------RSAEVGKGFT---------FTEFQLIPASTSKVESCHFSP 565 (655)
Q Consensus 529 --~~------d~~~--------------------------~l~d~~~~~t---------~~~v~~l~gH~~~V~sl~fSp 565 (655)
.. +.+. ++..-.+.++ .+++....+|..-|+.+.|||
T Consensus 298 Tdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSP 377 (480)
T KOG0271|consen 298 TDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSP 377 (480)
T ss_pred chhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECC
Confidence 00 0000 0111111111 234556779999999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeee
Q 006229 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVST 645 (655)
Q Consensus 566 dG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~ 645 (655)
|++++|+++.|+.||+||.++|+.+.+|+||-..|+-|+|+.|.++|+|||.|.|+||||+++.+....+.+|...+.
T Consensus 378 d~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf-- 455 (480)
T KOG0271|consen 378 DGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVF-- 455 (480)
T ss_pred CccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEE--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998877655
Q ss_pred ceeeEEEecC
Q 006229 646 AIGSCFFAPT 655 (655)
Q Consensus 646 ~Vss~~F~P~ 655 (655)
.+.|+||
T Consensus 456 ---~vDwspD 462 (480)
T KOG0271|consen 456 ---AVDWSPD 462 (480)
T ss_pred ---EEEecCC
Confidence 6788886
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.7e-19 Score=196.08 Aligned_cols=166 Identities=23% Similarity=0.350 Sum_probs=140.4
Q ss_pred CCCCceeccCCCCceEEEEecCCCC----------cccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccc
Q 006229 469 ISRPTLQHNGASSKSLLMFGSDGMG----------SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAE 538 (655)
Q Consensus 469 ~s~~~~~~s~S~d~s~l~ws~dg~~----------~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d 538 (655)
..+...+...+.++.+++|...+.. ...+....+...++++++++.|++|++|+..+.
T Consensus 168 s~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~------------ 235 (456)
T KOG0266|consen 168 SPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD------------ 235 (456)
T ss_pred cCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCC------------
Confidence 4555667778888899999883322 234445567777789999999999999966332
Q ss_pred cCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCC
Q 006229 539 VGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD 618 (655)
Q Consensus 539 ~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~D 618 (655)
...++++++|...|+||+|+|+|+++++|+.|++|||||+++++++.++.+|.+.|++|+|++++.+|++++.|
T Consensus 236 ------~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d 309 (456)
T KOG0266|consen 236 ------GRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYD 309 (456)
T ss_pred ------CeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCC
Confidence 26788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEECCCCe--EEEEEecccceeeeeceeeEEEecC
Q 006229 619 RTVRVWDTENVR--KLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 619 gtVrVWDl~tg~--~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
++|+|||+.++. |+..+..+... . .+.++.|+|+
T Consensus 310 ~~i~vwd~~~~~~~~~~~~~~~~~~--~-~~~~~~fsp~ 345 (456)
T KOG0266|consen 310 GTIRVWDLETGSKLCLKLLSGAENS--A-PVTSVQFSPN 345 (456)
T ss_pred ccEEEEECCCCceeeeecccCCCCC--C-ceeEEEECCC
Confidence 999999999999 66676655443 2 5788999885
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-18 Score=176.35 Aligned_cols=179 Identities=26% Similarity=0.315 Sum_probs=146.4
Q ss_pred CCCCceeccCCCCceEEEEecCCCCc-cccc-------CcccCCCCcEEEeccCCCcEEEEecCCC-C------------
Q 006229 469 ISRPTLQHNGASSKSLLMFGSDGMGS-LTSA-------PNQLTDMDRFVDDGSLDDNVESFLSPDD-A------------ 527 (655)
Q Consensus 469 ~s~~~~~~s~S~d~s~l~ws~dg~~~-lass-------s~~l~~~~~~LasGS~D~tV~vW~s~d~-~------------ 527 (655)
..+...+.++|.|..+++|+.-...+ .+++ ..++.+.+.+|++|+.|..+.+|..... .
T Consensus 64 s~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~g 143 (343)
T KOG0286|consen 64 STDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAG 143 (343)
T ss_pred cCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecC
Confidence 34557888899999999998876332 1222 2367899999999999999999955522 1
Q ss_pred ------------------CCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCe
Q 006229 528 ------------------DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFT 588 (655)
Q Consensus 528 ------------------d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSp-dG~lLaSgs~DgtVrIWDl~t~~ 588 (655)
...|.+-.+||+.++ ..+..|.+|++.|.+++++| +++++++|+.|++.+|||++.+.
T Consensus 144 HtgylScC~f~dD~~ilT~SGD~TCalWDie~g---~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~ 220 (343)
T KOG0286|consen 144 HTGYLSCCRFLDDNHILTGSGDMTCALWDIETG---QQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ 220 (343)
T ss_pred ccceeEEEEEcCCCceEecCCCceEEEEEcccc---eEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcc
Confidence 112333477888777 67778899999999999999 99999999999999999999999
Q ss_pred EEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEe
Q 006229 589 VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFA 653 (655)
Q Consensus 589 ~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~ 653 (655)
++.+|.||+..|++|+|.|+|.-++|||+|+++|+||+|....+..+..... ...|.+++|+
T Consensus 221 c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~---~~gitSv~FS 282 (343)
T KOG0286|consen 221 CVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSI---ICGITSVAFS 282 (343)
T ss_pred eeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcc---cCCceeEEEc
Confidence 9999999999999999999999999999999999999999888888763322 3346777776
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.8e-19 Score=196.32 Aligned_cols=142 Identities=23% Similarity=0.341 Sum_probs=125.9
Q ss_pred CCCceeccCCCCceEEEEecCCCCccc--------ccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCC
Q 006229 470 SRPTLQHNGASSKSLLMFGSDGMGSLT--------SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGK 541 (655)
Q Consensus 470 s~~~~~~s~S~d~s~l~ws~dg~~~la--------sss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~ 541 (655)
+-+-..++++.|++..+|+.+....+. +....|++...++++||.|.+||+|++..+
T Consensus 503 P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G--------------- 567 (707)
T KOG0263|consen 503 PRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTG--------------- 567 (707)
T ss_pred CCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCC---------------
Confidence 444677889999999999999843322 222467888899999999999999977766
Q ss_pred CceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcE
Q 006229 542 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTV 621 (655)
Q Consensus 542 ~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtV 621 (655)
..|+.|.||+++|++|+|||+|++|++|+.|+.|+|||+.+++.+..+.+|++.|++|.|+.+|..||+||.|.+|
T Consensus 568 ----~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV 643 (707)
T KOG0263|consen 568 ----NSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSV 643 (707)
T ss_pred ----cEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeE
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCe
Q 006229 622 RVWDTENVR 630 (655)
Q Consensus 622 rVWDl~tg~ 630 (655)
+|||+....
T Consensus 644 ~lWD~~~~~ 652 (707)
T KOG0263|consen 644 RLWDLTKVI 652 (707)
T ss_pred EEEEchhhc
Confidence 999997543
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-18 Score=181.76 Aligned_cols=161 Identities=17% Similarity=0.182 Sum_probs=136.0
Q ss_pred CCCCceeccCCCCceEEEEecCCCCccc--------ccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccC
Q 006229 469 ISRPTLQHNGASSKSLLMFGSDGMGSLT--------SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVG 540 (655)
Q Consensus 469 ~s~~~~~~s~S~d~s~l~ws~dg~~~la--------sss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~ 540 (655)
.++...+++++.|.++..|+++..+.+. +....+.+.+..|++|+.|++|++|+...+.
T Consensus 124 sp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~------------- 190 (480)
T KOG0271|consen 124 SPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQ------------- 190 (480)
T ss_pred cCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCC-------------
Confidence 3455688899999999999998754322 2233567778899999999999999766552
Q ss_pred CCceeeeEEeecCCCCCeeEEEEcC-----CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEE
Q 006229 541 KGFTFTEFQLIPASTSKVESCHFSP-----DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS 615 (655)
Q Consensus 541 ~~~t~~~v~~l~gH~~~V~sl~fSp-----dG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSg 615 (655)
...+.+++|+..|++++|.| ..++||+++.|++|+|||+..++++.++.||+..|+||+|--+ .+|+||
T Consensus 191 -----~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySg 264 (480)
T KOG0271|consen 191 -----QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSG 264 (480)
T ss_pred -----cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEec
Confidence 34577899999999999976 6789999999999999999999999999999999999999744 599999
Q ss_pred eCCCcEEEEECCCCeEEEEEecccceeeeecee
Q 006229 616 SADRTVRVWDTENVRKLTFICCYKCIFVSTAIG 648 (655)
Q Consensus 616 S~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vs 648 (655)
|.|++||+|+...|.+++++.+|...+...+.+
T Consensus 265 S~DrtIkvw~a~dG~~~r~lkGHahwvN~lals 297 (480)
T KOG0271|consen 265 SQDRTIKVWRALDGKLCRELKGHAHWVNHLALS 297 (480)
T ss_pred CCCceEEEEEccchhHHHhhcccchheeeeecc
Confidence 999999999999999999999998877655543
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-18 Score=180.26 Aligned_cols=143 Identities=19% Similarity=0.249 Sum_probs=123.3
Q ss_pred cccCCCCcEEEeccCCCcEEEEecCCCC--------------------------CCCCccccccccCCCceeeeEEeecC
Q 006229 500 NQLTDMDRFVDDGSLDDNVESFLSPDDA--------------------------DPRDRVGRSAEVGKGFTFTEFQLIPA 553 (655)
Q Consensus 500 ~~l~~~~~~LasGS~D~tV~vW~s~d~~--------------------------d~~d~~~~l~d~~~~~t~~~v~~l~g 553 (655)
.++++.+.++++||.|++|++|+...+. .+.+..+++||+... +.++.+.|
T Consensus 157 vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~n---kvIR~YhG 233 (460)
T KOG0285|consen 157 VAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYN---KVIRHYHG 233 (460)
T ss_pred EeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhh---hhHHHhcc
Confidence 3556667788888888888888777664 233455577777654 67788999
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE
Q 006229 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLT 633 (655)
Q Consensus 554 H~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~ 633 (655)
|-+.|.|++.+|.-..|+||+.|.++||||+++...+.++.||+..|.+|.+.|....++|||.|++||+||++.|+...
T Consensus 234 HlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~ 313 (460)
T KOG0285|consen 234 HLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMI 313 (460)
T ss_pred ccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecccceeeee
Q 006229 634 FICCYKCIFVST 645 (655)
Q Consensus 634 ~l~~~~~~v~s~ 645 (655)
++..|...+-+.
T Consensus 314 tlt~hkksvral 325 (460)
T KOG0285|consen 314 TLTHHKKSVRAL 325 (460)
T ss_pred eeecccceeeEE
Confidence 999887765543
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.5e-17 Score=166.10 Aligned_cols=160 Identities=20% Similarity=0.280 Sum_probs=136.2
Q ss_pred ceeccCCCCceEEEEecCC-C-----------CcccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccC
Q 006229 473 TLQHNGASSKSLLMFGSDG-M-----------GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVG 540 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg-~-----------~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~ 540 (655)
.++++++.++.+.+|+..+ . ....+.+.+..+++++|+++|+|.++.+|--.+
T Consensus 28 ~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~--------------- 92 (312)
T KOG0645|consen 28 VILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKED--------------- 92 (312)
T ss_pred eEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCC---------------
Confidence 4788999999999999884 1 112344556788999999999999999994332
Q ss_pred CCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCC---CCeEEEEecccCCCEEEEEEcCCCCEEEEEeC
Q 006229 541 KGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE---SFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617 (655)
Q Consensus 541 ~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~---t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~ 617 (655)
.+|+++.++.||...|.|++|+++|++|||++.|+.|-||.+. ..+|+..|.+|+..|..|.|+|...+|+|+|.
T Consensus 93 --~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SY 170 (312)
T KOG0645|consen 93 --GEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSY 170 (312)
T ss_pred --CceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEecc
Confidence 3578999999999999999999999999999999999999986 45789999999999999999999999999999
Q ss_pred CCcEEEEECC---CCeEEEEEecccceeeeeceeeEEEec
Q 006229 618 DRTVRVWDTE---NVRKLTFICCYKCIFVSTAIGSCFFAP 654 (655)
Q Consensus 618 DgtVrVWDl~---tg~~v~~l~~~~~~v~s~~Vss~~F~P 654 (655)
|.+||+|+-. .-.|+.+|.+|...+ .+++|+|
T Consensus 171 DnTIk~~~~~~dddW~c~~tl~g~~~TV-----W~~~F~~ 205 (312)
T KOG0645|consen 171 DNTIKVYRDEDDDDWECVQTLDGHENTV-----WSLAFDN 205 (312)
T ss_pred CCeEEEEeecCCCCeeEEEEecCccceE-----EEEEecC
Confidence 9999999876 457899999987744 4566665
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-18 Score=183.27 Aligned_cols=162 Identities=20% Similarity=0.201 Sum_probs=136.9
Q ss_pred CCCCceeccCCCCceEEEEecCCC--------CcccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccC
Q 006229 469 ISRPTLQHNGASSKSLLMFGSDGM--------GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVG 540 (655)
Q Consensus 469 ~s~~~~~~s~S~d~s~l~ws~dg~--------~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~ 540 (655)
+++.....++..++.+..|.+.-. ..-.+...++.+.+.-++++|.|++|++|+....
T Consensus 147 s~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~-------------- 212 (464)
T KOG0284|consen 147 SHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP-------------- 212 (464)
T ss_pred ccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCC--------------
Confidence 344566777777788888887652 1233445567777788899999999999965544
Q ss_pred CCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCc
Q 006229 541 KGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620 (655)
Q Consensus 541 ~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~Dgt 620 (655)
++.+.+.+|.-.|.||+|+|...+|++||.|..|++||.+++.|+.++.+|+..|..|.|.|++.+|+|+|.|..
T Consensus 213 -----kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~ 287 (464)
T KOG0284|consen 213 -----KEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQS 287 (464)
T ss_pred -----chhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCce
Confidence 456777999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCeEEEEEecccceeeeeceeeEEEec
Q 006229 621 VRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAP 654 (655)
Q Consensus 621 VrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P 654 (655)
++|+|+++.+.+.++.+|...+ .++.|||
T Consensus 288 ~kv~DiR~mkEl~~~r~Hkkdv-----~~~~WhP 316 (464)
T KOG0284|consen 288 CKVFDIRTMKELFTYRGHKKDV-----TSLTWHP 316 (464)
T ss_pred EEEEehhHhHHHHHhhcchhhh-----eeecccc
Confidence 9999999988888888887654 4677777
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1e-17 Score=186.42 Aligned_cols=175 Identities=18% Similarity=0.242 Sum_probs=143.5
Q ss_pred CCceeccCCCCceEEEEecCCCCc------------ccccCcc-cCCCCcEEEeccCCCcEEEEecCCCC----------
Q 006229 471 RPTLQHNGASSKSLLMFGSDGMGS------------LTSAPNQ-LTDMDRFVDDGSLDDNVESFLSPDDA---------- 527 (655)
Q Consensus 471 ~~~~~~s~S~d~s~l~ws~dg~~~------------lasss~~-l~~~~~~LasGS~D~tV~vW~s~d~~---------- 527 (655)
.+.++.+++.|++++.|..+.... ..+.... -.....|++++|.|.++++|..+.++
T Consensus 376 ~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~ 455 (775)
T KOG0319|consen 376 SGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTC 455 (775)
T ss_pred cCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehh
Confidence 335889999999999997733110 0000111 12333789999999999999776632
Q ss_pred -------------------------CCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 006229 528 -------------------------DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (655)
Q Consensus 528 -------------------------d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIW 582 (655)
.+.|...++|+.. ......++.||+..|.||.|++...+++|+|.|+|||||
T Consensus 456 ~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le---~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW 532 (775)
T KOG0319|consen 456 RYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLE---QLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIW 532 (775)
T ss_pred hHHHHhhcccccceEecCCCceEEecccccceeeeccc---CceEEEEeeCCccceEEEEeccccceeEeccCCceEEEE
Confidence 1234445777766 347788999999999999999999999999999999999
Q ss_pred eCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeecee
Q 006229 583 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIG 648 (655)
Q Consensus 583 Dl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vs 648 (655)
.+.++.|+.+|+||+..|..+.|-.+++.|+||+.||.||||++.+.+|+.++..|...+....++
T Consensus 533 ~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~ 598 (775)
T KOG0319|consen 533 SISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVS 598 (775)
T ss_pred EeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeec
Confidence 999999999999999999999999999999999999999999999999999999999888766543
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5e-19 Score=182.71 Aligned_cols=170 Identities=17% Similarity=0.239 Sum_probs=144.8
Q ss_pred ceeccCCCCceEEEEecCCCC------cccccCcccCCCCcEEEeccCCCcEEEEecCCCC-------------------
Q 006229 473 TLQHNGASSKSLLMFGSDGMG------SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDA------------------- 527 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~------~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~------------------- 527 (655)
...+++..|.++.+|+..... ....+...+.-.++.+++||.|.+|++|++..+.
T Consensus 208 ~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~n 287 (499)
T KOG0281|consen 208 EKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN 287 (499)
T ss_pred hhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeC
Confidence 567788899999999987621 1222333555666899999999999999998886
Q ss_pred -----CCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEE
Q 006229 528 -----DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITD 602 (655)
Q Consensus 528 -----d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~Its 602 (655)
..+|+.+.+|+........+.+.+.||...|+.|+|+ .+++++++.|.+||+|++.++++++++.||...|-|
T Consensus 288 g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAC 365 (499)
T KOG0281|consen 288 GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIAC 365 (499)
T ss_pred CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhccccccee
Confidence 3567778999988877666778889999999999996 679999999999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeec
Q 006229 603 VRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTA 646 (655)
Q Consensus 603 VafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~ 646 (655)
+.+. +++++|||.|.+|||||+..|.|++.+.+|...+-|+-
T Consensus 366 lQYr--~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciR 407 (499)
T KOG0281|consen 366 LQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIR 407 (499)
T ss_pred hhcc--CeEEEecCCCceEEEEeccccHHHHHHhchHHhhhhee
Confidence 9875 89999999999999999999999999999988765443
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2e-17 Score=176.62 Aligned_cols=179 Identities=20% Similarity=0.279 Sum_probs=143.9
Q ss_pred CCCCceeccCCCCceEEEEecCCCCc-------ccccCcccCCCCcEEEeccCCCcEEEEecCCCC---------CC---
Q 006229 469 ISRPTLQHNGASSKSLLMFGSDGMGS-------LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDA---------DP--- 529 (655)
Q Consensus 469 ~s~~~~~~s~S~d~s~l~ws~dg~~~-------lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~---------d~--- 529 (655)
..+++.+++++.++.+.+|+.+|.-. -.+.+.+....+.+|++++.|+++.+|+...+. .+
T Consensus 244 n~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lD 323 (524)
T KOG0273|consen 244 NNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALD 323 (524)
T ss_pred cCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccc
Confidence 44567889999999999999988321 123334557777899999999999999886664 01
Q ss_pred -------------CCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccc
Q 006229 530 -------------RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH 596 (655)
Q Consensus 530 -------------~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH 596 (655)
-+..+++..+. ..+++.++.+|.++|.++.|+|.|.+|+|+|.|+|++||.+....+.+.|.+|
T Consensus 324 VdW~~~~~F~ts~td~~i~V~kv~---~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~H 400 (524)
T KOG0273|consen 324 VDWQSNDEFATSSTDGCIHVCKVG---EDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAH 400 (524)
T ss_pred eEEecCceEeecCCCceEEEEEec---CCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhh
Confidence 01111222221 22567888899999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEcCC---------CCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 597 TQWITDVRFSPS---------LSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 597 ~~~ItsVafsPd---------g~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
+..|+.+.|+|+ +..|++++.|++|++||+..+.|+++|..|...| ++++|+|+
T Consensus 401 skei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pV-----ysvafS~~ 463 (524)
T KOG0273|consen 401 SKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPV-----YSVAFSPN 463 (524)
T ss_pred ccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCce-----EEEEecCC
Confidence 999999999995 4589999999999999999999999999887765 46777774
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-17 Score=173.93 Aligned_cols=170 Identities=19% Similarity=0.273 Sum_probs=130.7
Q ss_pred ceeccCCCCceEEEEecCC---------CCcccccCcccCCCCcEEEeccCCCcEEEEecCCCC----------------
Q 006229 473 TLQHNGASSKSLLMFGSDG---------MGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDA---------------- 527 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg---------~~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~---------------- 527 (655)
..+++++.|-.+..|+.+. .....++...+.+.+++|.+++.|.+|+.|....+.
T Consensus 163 k~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~ 242 (406)
T KOG0295|consen 163 KYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVR 242 (406)
T ss_pred cEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEE
Confidence 5566666666666776665 123445555666777788888888888888666554
Q ss_pred ----------CCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCC----------C-----CEEEEEeCCCcEEEE
Q 006229 528 ----------DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD----------G-----KLLATGGHDKKAVLW 582 (655)
Q Consensus 528 ----------d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpd----------G-----~lLaSgs~DgtVrIW 582 (655)
...+-.+++|.+... .+...++.|.-+|.|++|.|. | .++++++.|++||+|
T Consensus 243 v~~DGti~As~s~dqtl~vW~~~t~---~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~w 319 (406)
T KOG0295|consen 243 VNQDGTIIASCSNDQTLRVWVVATK---QCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIW 319 (406)
T ss_pred ecCCeeEEEecCCCceEEEEEeccc---hhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEE
Confidence 112223344444433 345567789999999999763 2 489999999999999
Q ss_pred eCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeee
Q 006229 583 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVST 645 (655)
Q Consensus 583 Dl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~ 645 (655)
|+.++.|+.++.||...|..++|+|.|+||+|+.+|+++||||+.++.|.+++..|.-.+.+.
T Consensus 320 dv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~l 382 (406)
T KOG0295|consen 320 DVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSL 382 (406)
T ss_pred eccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEE
Confidence 999999999999999999999999999999999999999999999999999999887665543
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.2e-17 Score=161.59 Aligned_cols=178 Identities=20% Similarity=0.276 Sum_probs=141.7
Q ss_pred CCCCceeccCCCCceEEEEecCCCC-----ccccc--CcccCCCCcEEEeccCCCcEEEEecCCCC--------------
Q 006229 469 ISRPTLQHNGASSKSLLMFGSDGMG-----SLTSA--PNQLTDMDRFVDDGSLDDNVESFLSPDDA-------------- 527 (655)
Q Consensus 469 ~s~~~~~~s~S~d~s~l~ws~dg~~-----~lass--s~~l~~~~~~LasGS~D~tV~vW~s~d~~-------------- 527 (655)
..++....+++.|+++.+|+..... ...++ ...+.++..-|.+|.-+++|++|+.....
T Consensus 92 ~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~ 171 (311)
T KOG0315|consen 92 QCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQ 171 (311)
T ss_pred eecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCccee
Confidence 4556788999999999999987621 12222 33456666778899999999999766542
Q ss_pred ------CCC-------CccccccccCC---CceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC-eEE
Q 006229 528 ------DPR-------DRVGRSAEVGK---GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVK 590 (655)
Q Consensus 528 ------d~~-------d~~~~l~d~~~---~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~-~~l 590 (655)
++. ...--+|+... ...+.++..++.|.+.|..|.||||+++||++|.|++|+||+++++ +..
T Consensus 172 sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle 251 (311)
T KOG0315|consen 172 SLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLE 251 (311)
T ss_pred eEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeE
Confidence 110 01113444433 2345677889999999999999999999999999999999999998 777
Q ss_pred EEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeec
Q 006229 591 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTA 646 (655)
Q Consensus 591 ~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~ 646 (655)
..+++|...|++++||.||+||+|||.|+++|+||++.++.++.+.+|.....|.+
T Consensus 252 ~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ 307 (311)
T KOG0315|consen 252 LVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVA 307 (311)
T ss_pred EEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEE
Confidence 88899999999999999999999999999999999999999999999877665443
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.3e-16 Score=179.39 Aligned_cols=122 Identities=19% Similarity=0.235 Sum_probs=106.1
Q ss_pred cEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCC-CEEEEEeCCCcEEEEeCC
Q 006229 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTE 585 (655)
Q Consensus 507 ~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG-~lLaSgs~DgtVrIWDl~ 585 (655)
.+|++||.|++|++|+..++... ......+..+.+|...|.+|+|+|++ .+|++|+.|++|+|||+.
T Consensus 89 ~~LaSgS~DgtIkIWdi~~~~~~------------~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~ 156 (493)
T PTZ00421 89 QKLFTASEDGTIMGWGIPEEGLT------------QNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVE 156 (493)
T ss_pred CEEEEEeCCCEEEEEecCCCccc------------cccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECC
Confidence 58999999999999977654210 00113566788999999999999975 699999999999999999
Q ss_pred CCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccc
Q 006229 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKC 640 (655)
Q Consensus 586 t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~ 640 (655)
+++.+..+.+|...|++|+|+|++.+|+|++.|++|+|||+++++.+..+.+|..
T Consensus 157 tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~ 211 (493)
T PTZ00421 157 RGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHAS 211 (493)
T ss_pred CCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCC
Confidence 9999999999999999999999999999999999999999999999988887754
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-16 Score=162.78 Aligned_cols=154 Identities=18% Similarity=0.238 Sum_probs=125.0
Q ss_pred CceEEEEecCCCCcccccCcccCCCCcEEEeccCCCcEEEEecCCCCC--------------------------CCCccc
Q 006229 481 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDAD--------------------------PRDRVG 534 (655)
Q Consensus 481 d~s~l~ws~dg~~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d--------------------------~~d~~~ 534 (655)
..+++.|++|. +.++++|.|+.+-+|++.+... +-+..-
T Consensus 57 Ki~~~~ws~Ds---------------r~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~C 121 (343)
T KOG0286|consen 57 KIYAMDWSTDS---------------RRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKC 121 (343)
T ss_pred ceeeeEecCCc---------------CeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCcee
Confidence 45666677654 4789999999999998776641 111111
Q ss_pred cccccCC---CceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcC-CCC
Q 006229 535 RSAEVGK---GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLS 610 (655)
Q Consensus 535 ~l~d~~~---~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsP-dg~ 610 (655)
.++++.. ....+..+.+.+|++.+.||.|-.|+ .|+|++.|.++-+||++++..+..|.||++.|.+|+++| +++
T Consensus 122 siy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~n 200 (343)
T KOG0286|consen 122 SIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGN 200 (343)
T ss_pred EEEecccccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCC
Confidence 2222221 12335668899999999999998755 688999999999999999999999999999999999999 999
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 611 RLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 611 ~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
.++||+-|++.+|||+|.+.|+.+|.+|.. +|+++.|+|+
T Consensus 201 tFvSg~cD~~aklWD~R~~~c~qtF~ghes-----DINsv~ffP~ 240 (343)
T KOG0286|consen 201 TFVSGGCDKSAKLWDVRSGQCVQTFEGHES-----DINSVRFFPS 240 (343)
T ss_pred eEEecccccceeeeeccCcceeEeeccccc-----ccceEEEccC
Confidence 999999999999999999999999999864 5778999996
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-16 Score=177.65 Aligned_cols=154 Identities=21% Similarity=0.295 Sum_probs=134.9
Q ss_pred CCCCceeccCCCCceEEEEecCCCC---------cccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCcccccccc
Q 006229 469 ISRPTLQHNGASSKSLLMFGSDGMG---------SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEV 539 (655)
Q Consensus 469 ~s~~~~~~s~S~d~s~l~ws~dg~~---------~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~ 539 (655)
.+++..+.+++.|+++.+|+....+ ...+....|.+.++++++|+.|++|++|+...+
T Consensus 212 s~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~------------- 278 (456)
T KOG0266|consen 212 SPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG------------- 278 (456)
T ss_pred CCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCC-------------
Confidence 5566788999999999999993321 123345577888899999999999999966544
Q ss_pred CCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCe--EEEEecccCCC--EEEEEEcCCCCEEEEE
Q 006229 540 GKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQW--ITDVRFSPSLSRLATS 615 (655)
Q Consensus 540 ~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~--~l~tl~gH~~~--ItsVafsPdg~~LaSg 615 (655)
++++.+.+|.+.|++|+|++|+++|++++.|+.|+|||+.++. ++.++.++... |++++|+|++.+|+++
T Consensus 279 ------~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~ 352 (456)
T KOG0266|consen 279 ------ECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSA 352 (456)
T ss_pred ------eEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEe
Confidence 6889999999999999999999999999999999999999999 67888888777 9999999999999999
Q ss_pred eCCCcEEEEECCCCeEEEEEecccce
Q 006229 616 SADRTVRVWDTENVRKLTFICCYKCI 641 (655)
Q Consensus 616 S~DgtVrVWDl~tg~~v~~l~~~~~~ 641 (655)
+.|++|++||++.+.++..+.+|...
T Consensus 353 ~~d~~~~~w~l~~~~~~~~~~~~~~~ 378 (456)
T KOG0266|consen 353 SLDRTLKLWDLRSGKSVGTYTGHSNL 378 (456)
T ss_pred cCCCeEEEEEccCCcceeeecccCCc
Confidence 99999999999999999999988765
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.3e-17 Score=177.76 Aligned_cols=169 Identities=17% Similarity=0.218 Sum_probs=130.3
Q ss_pred CCceEEEEecCCCCcc--------cccCcccCCCCcEEEeccCCCcEEEEecCCCC------------------------
Q 006229 480 SSKSLLMFGSDGMGSL--------TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDA------------------------ 527 (655)
Q Consensus 480 ~d~s~l~ws~dg~~~l--------asss~~l~~~~~~LasGS~D~tV~vW~s~d~~------------------------ 527 (655)
..+.+-+|+.+....+ .+....|-....++++||.|..|++|+.....
T Consensus 33 ynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~v 112 (794)
T KOG0276|consen 33 YNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYV 112 (794)
T ss_pred ecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeE
Confidence 3455666666653211 11122334444667777777777777555443
Q ss_pred --CCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEE
Q 006229 528 --DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVR 604 (655)
Q Consensus 528 --d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSp-dG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVa 604 (655)
..+|..+++|+-... +.+..++.||+..|.+|+|+| |.+.+||+|-|+||+||.+.+..+..+|+||+..|+||+
T Consensus 113 LtsSDDm~iKlW~we~~--wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vd 190 (794)
T KOG0276|consen 113 LTSSDDMTIKLWDWENE--WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVD 190 (794)
T ss_pred EecCCccEEEEeeccCc--eeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEE
Confidence 233444566655443 678899999999999999999 888999999999999999999999999999999999999
Q ss_pred EcCCC--CEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 605 FSPSL--SRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 605 fsPdg--~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
|-+-| .+|+||+.|.+|||||..+..|+.++.+|..- |+.++|||.
T Consensus 191 yy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~N-----vs~v~fhp~ 238 (794)
T KOG0276|consen 191 YYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNN-----VSFVFFHPE 238 (794)
T ss_pred eccCCCcceEEecCCCceEEEeecchHHHHHHhhccccc-----ceEEEecCC
Confidence 98855 59999999999999999999999999999764 457888884
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-16 Score=178.10 Aligned_cols=144 Identities=24% Similarity=0.289 Sum_probs=121.5
Q ss_pred CCCCcEEEeccCCCcEEEEecCCCC-------------------------------CCCCccccccccCCCce------e
Q 006229 503 TDMDRFVDDGSLDDNVESFLSPDDA-------------------------------DPRDRVGRSAEVGKGFT------F 545 (655)
Q Consensus 503 ~~~~~~LasGS~D~tV~vW~s~d~~-------------------------------d~~d~~~~l~d~~~~~t------~ 545 (655)
+..+.++++||.|.+|++|...++. .+.|.++++|+..+... +
T Consensus 374 ~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~ 453 (775)
T KOG0319|consen 374 WSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVL 453 (775)
T ss_pred cccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCccccccccee
Confidence 4555799999999999999552221 33466678888776211 1
Q ss_pred eeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 006229 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (655)
Q Consensus 546 ~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWD 625 (655)
.+-.+...|...|+||+++|+.++|||||.|++++||+++.+....+|.||+..|+||.|+|....++|+|.|+|||||.
T Consensus 454 ~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~ 533 (775)
T KOG0319|consen 454 TCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWS 533 (775)
T ss_pred hhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEE
Confidence 12224467999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEecccceeeeec
Q 006229 626 TENVRKLTFICCYKCIFVSTA 646 (655)
Q Consensus 626 l~tg~~v~~l~~~~~~v~s~~ 646 (655)
+.+++|+.+|.+|++.+....
T Consensus 534 is~fSClkT~eGH~~aVlra~ 554 (775)
T KOG0319|consen 534 ISTFSCLKTFEGHTSAVLRAS 554 (775)
T ss_pred eccceeeeeecCccceeEeee
Confidence 999999999999988776443
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.9e-17 Score=182.97 Aligned_cols=147 Identities=16% Similarity=0.273 Sum_probs=114.0
Q ss_pred ccCCCCcEEEeccCCCcEEEEecCCCC-------C----------------------------------CCCcccccccc
Q 006229 501 QLTDMDRFVDDGSLDDNVESFLSPDDA-------D----------------------------------PRDRVGRSAEV 539 (655)
Q Consensus 501 ~l~~~~~~LasGS~D~tV~vW~s~d~~-------d----------------------------------~~d~~~~l~d~ 539 (655)
.|...++|||+|+.|+.|+||.+.+.. + .....+.+.+.
T Consensus 274 KFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~~ 353 (712)
T KOG0283|consen 274 KFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLPLK 353 (712)
T ss_pred EeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccccCCCc
Confidence 334444599999999999999666511 0 00000111122
Q ss_pred CCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcC-CCCEEEEEeCC
Q 006229 540 GKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSAD 618 (655)
Q Consensus 540 ~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsP-dg~~LaSgS~D 618 (655)
.-.+.-+++..+.||++.|.+|.||.++ +|++++.|+|||||++....|+++|. |.+.||||+|+| |.+|++|||-|
T Consensus 354 ~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD 431 (712)
T KOG0283|consen 354 AFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLD 431 (712)
T ss_pred cccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccc
Confidence 2234446788899999999999999655 89999999999999999999999997 999999999999 78999999999
Q ss_pred CcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 619 RTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 619 gtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
|.||||++...+.+.+..++. .|++++|.|+
T Consensus 432 ~KvRiWsI~d~~Vv~W~Dl~~------lITAvcy~Pd 462 (712)
T KOG0283|consen 432 GKVRLWSISDKKVVDWNDLRD------LITAVCYSPD 462 (712)
T ss_pred cceEEeecCcCeeEeehhhhh------hheeEEeccC
Confidence 999999999888777766662 2556777775
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3e-16 Score=158.83 Aligned_cols=132 Identities=17% Similarity=0.197 Sum_probs=113.8
Q ss_pred CcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 006229 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (655)
Q Consensus 506 ~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~ 585 (655)
...+.++|.|.++-+|....+ +......++.++||+..|..|+.++||.+.++++.|+++|+||+.
T Consensus 28 ~~~l~sasrDk~ii~W~L~~d--------------d~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~ 93 (315)
T KOG0279|consen 28 SDILVSASRDKTIIVWKLTSD--------------DIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLA 93 (315)
T ss_pred CceEEEcccceEEEEEEeccC--------------ccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEec
Confidence 367899999999999965543 112235788999999999999999999999999999999999999
Q ss_pred CCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 586 t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
+++....|.||+..|.+|+|++|.+.|+|||.|.+|++||+. +.|..++..+.. .-.|++++|+|+
T Consensus 94 ~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~-g~ck~t~~~~~~---~~WVscvrfsP~ 159 (315)
T KOG0279|consen 94 TGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL-GVCKYTIHEDSH---REWVSCVRFSPN 159 (315)
T ss_pred CCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeec-ccEEEEEecCCC---cCcEEEEEEcCC
Confidence 999999999999999999999999999999999999999997 566666655532 334778999995
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.6e-17 Score=168.78 Aligned_cols=153 Identities=14% Similarity=0.170 Sum_probs=127.9
Q ss_pred CCCCCceeccCCCCceEEEEecCCC-Cc---------------ccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCC
Q 006229 468 VISRPTLQHNGASSKSLLMFGSDGM-GS---------------LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRD 531 (655)
Q Consensus 468 ~~s~~~~~~s~S~d~s~l~ws~dg~-~~---------------lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d 531 (655)
.++++..+++++.|+-+-+|+-... -+ -++....|...+..+++|+-|+.|++|....+
T Consensus 221 FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG----- 295 (508)
T KOG0275|consen 221 FSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETG----- 295 (508)
T ss_pred eCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecc-----
Confidence 3566788999999999999986531 00 11222244555677889999999999954444
Q ss_pred ccccccccCCCceeeeEEeec-CCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCC
Q 006229 532 RVGRSAEVGKGFTFTEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 610 (655)
Q Consensus 532 ~~~~l~d~~~~~t~~~v~~l~-gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~ 610 (655)
.|++.+. +|+..|+|+.||.|+..+++++.|.+|||.-+.+|++++.|+||+..|+.+.|.+||.
T Consensus 296 --------------~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~ 361 (508)
T KOG0275|consen 296 --------------QCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGH 361 (508)
T ss_pred --------------hHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCC
Confidence 4555554 8999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEEeccc
Q 006229 611 RLATSSADRTVRVWDTENVRKLTFICCYK 639 (655)
Q Consensus 611 ~LaSgS~DgtVrVWDl~tg~~v~~l~~~~ 639 (655)
+++|+|.||+||||+..+.+|+.+|....
T Consensus 362 ~iisaSsDgtvkvW~~KtteC~~Tfk~~~ 390 (508)
T KOG0275|consen 362 HIISASSDGTVKVWHGKTTECLSTFKPLG 390 (508)
T ss_pred eEEEecCCccEEEecCcchhhhhhccCCC
Confidence 99999999999999999999999987655
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.7e-16 Score=156.26 Aligned_cols=107 Identities=23% Similarity=0.337 Sum_probs=99.7
Q ss_pred ceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 006229 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622 (655)
Q Consensus 543 ~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVr 622 (655)
..++++..+++|...+.||.|+|+|++||+|+.|..|.+||++..-|++.+..|+-+|..|.|+.||++|||||+|..|-
T Consensus 177 psLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~ID 256 (313)
T KOG1407|consen 177 PSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFID 256 (313)
T ss_pred cccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEE
Confidence 44567888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 623 VWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 623 VWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
|=++.+|..+..+.|....+ .++|||.
T Consensus 257 IA~vetGd~~~eI~~~~~t~------tVAWHPk 283 (313)
T KOG1407|consen 257 IAEVETGDRVWEIPCEGPTF------TVAWHPK 283 (313)
T ss_pred eEecccCCeEEEeeccCCce------eEEecCC
Confidence 99999999999998876654 6999995
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.1e-15 Score=171.40 Aligned_cols=125 Identities=10% Similarity=0.138 Sum_probs=103.8
Q ss_pred CcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCE-EEEEeCCCcEEEEeC
Q 006229 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKL-LATGGHDKKAVLWCT 584 (655)
Q Consensus 506 ~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~l-LaSgs~DgtVrIWDl 584 (655)
+.+|++|+.|++|++|+...+.... . .....+..+.+|...|.+|+|+|++.. |++|+.|++|+|||+
T Consensus 87 ~~lLASgS~DgtIrIWDi~t~~~~~---------~--~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl 155 (568)
T PTZ00420 87 SEILASGSEDLTIRVWEIPHNDESV---------K--EIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDI 155 (568)
T ss_pred CCEEEEEeCCCeEEEEECCCCCccc---------c--ccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEEC
Confidence 4689999999999999776542100 0 001234567899999999999998875 579999999999999
Q ss_pred CCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEeccccee
Q 006229 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIF 642 (655)
Q Consensus 585 ~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v 642 (655)
++++.+..+. |...|++|+|+|+|.+|++++.|++|+|||+++++++..+.+|....
T Consensus 156 ~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~ 212 (568)
T PTZ00420 156 ENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGK 212 (568)
T ss_pred CCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCc
Confidence 9998887776 67889999999999999999999999999999999999998887543
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.2e-17 Score=166.86 Aligned_cols=150 Identities=16% Similarity=0.276 Sum_probs=121.4
Q ss_pred ceeccCCCCceEEEEecCCCCccccc------CcccCCCCcEEEeccCCCcEEEEecCCCC-------------------
Q 006229 473 TLQHNGASSKSLLMFGSDGMGSLTSA------PNQLTDMDRFVDDGSLDDNVESFLSPDDA------------------- 527 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~~lass------s~~l~~~~~~LasGS~D~tV~vW~s~d~~------------------- 527 (655)
.++.+++.|.++.+|+......+.+- ..-+...+.+++++|.|.++.+|+.....
T Consensus 248 rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVd 327 (499)
T KOG0281|consen 248 RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVD 327 (499)
T ss_pred eEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeec
Confidence 57788889999999988763221111 11223444678899999999999665543
Q ss_pred --------CCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCC
Q 006229 528 --------DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW 599 (655)
Q Consensus 528 --------d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ 599 (655)
...|++++.|+..++ .+++++.+|...|.|+.+. |+++++|+.|.+||+||++.|.|++.++||+..
T Consensus 328 fd~kyIVsASgDRTikvW~~st~---efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeL 402 (499)
T KOG0281|consen 328 FDDKYIVSASGDRTIKVWSTSTC---EFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEEL 402 (499)
T ss_pred cccceEEEecCCceEEEEeccce---eeehhhhcccccceehhcc--CeEEEecCCCceEEEEeccccHHHHHHhchHHh
Confidence 234566677766654 8899999999999999884 999999999999999999999999999999999
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 006229 600 ITDVRFSPSLSRLATSSADRTVRVWDTENV 629 (655)
Q Consensus 600 ItsVafsPdg~~LaSgS~DgtVrVWDl~tg 629 (655)
|.||+|. .+.|+||+.||+|||||+..+
T Consensus 403 vRciRFd--~krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 403 VRCIRFD--NKRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred hhheeec--CceeeeccccceEEEEecccc
Confidence 9999995 789999999999999999764
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.4e-16 Score=167.73 Aligned_cols=130 Identities=18% Similarity=0.298 Sum_probs=109.5
Q ss_pred ccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCC-CCeeEEEEcCCCCEEEEEeCCCcE
Q 006229 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST-SKVESCHFSPDGKLLATGGHDKKA 579 (655)
Q Consensus 501 ~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~-~~V~sl~fSpdG~lLaSgs~DgtV 579 (655)
.....+.++++|..|+.|+.|... ...+..+.+|. ..|+|++|||....|+|++.|++|
T Consensus 145 ~ws~~g~wmiSgD~gG~iKyWqpn--------------------mnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~i 204 (464)
T KOG0284|consen 145 KWSHNGTWMISGDKGGMIKYWQPN--------------------MNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTI 204 (464)
T ss_pred EEccCCCEEEEcCCCceEEecccc--------------------hhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeE
Confidence 334555677778778888877322 23455566655 899999999988899999999999
Q ss_pred EEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 580 VLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 580 rIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
+|||....+..+.+.||.-.|+||+|+|.-.+|||||.|..|++||.+++.|+.++..|...+. .+.|.|+
T Consensus 205 kiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl-----~~~f~~n 275 (464)
T KOG0284|consen 205 KIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVL-----AVKFNPN 275 (464)
T ss_pred EEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEE-----EEEEcCC
Confidence 9999999999899999999999999999999999999999999999999999999999887655 5666653
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.6e-15 Score=150.57 Aligned_cols=129 Identities=24% Similarity=0.390 Sum_probs=107.9
Q ss_pred CcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEee-cCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 006229 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI-PASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (655)
Q Consensus 506 ~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l-~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl 584 (655)
+..|++|+.|+.|++|....+ .++.+...+ .+|+..|++|+|+|.|++|++||.|.++.||.-
T Consensus 27 g~ilAscg~Dk~vriw~~~~~----------------~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k 90 (312)
T KOG0645|consen 27 GVILASCGTDKAVRIWSTSSG----------------DSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKK 90 (312)
T ss_pred ceEEEeecCCceEEEEecCCC----------------CcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeec
Confidence 358999999999999955432 123343333 379999999999999999999999999999975
Q ss_pred C--CCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC---CCeEEEEEecccceeeeeceeeEEEecC
Q 006229 585 E--SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE---NVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 585 ~--t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~---tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
. .++++.+++||+..|.||+|+++|.+|||||.|+.|-||.+. ..+|+..+..|.- +|--|.|||+
T Consensus 91 ~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~Htq-----DVK~V~WHPt 161 (312)
T KOG0645|consen 91 EDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQ-----DVKHVIWHPT 161 (312)
T ss_pred CCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccc-----cccEEEEcCC
Confidence 4 568999999999999999999999999999999999999997 3467788887755 3457899995
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-15 Score=152.18 Aligned_cols=105 Identities=21% Similarity=0.332 Sum_probs=89.7
Q ss_pred eeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 006229 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (655)
Q Consensus 546 ~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWD 625 (655)
.++.++.+|+..|++|.|..||++++|||+||+|||||++...+-+.+. |...|++|..+|+-..|++|..+|.|+|||
T Consensus 74 ~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWD 152 (311)
T KOG0315|consen 74 NPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWD 152 (311)
T ss_pred CceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEE
Confidence 3788999999999999999999999999999999999999977777665 889999999999999999999999999999
Q ss_pred CCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 626 TENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 626 l~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
+.+..|.+.+..... ..|.++..+||
T Consensus 153 l~~~~c~~~liPe~~----~~i~sl~v~~d 178 (311)
T KOG0315|consen 153 LGENSCTHELIPEDD----TSIQSLTVMPD 178 (311)
T ss_pred ccCCccccccCCCCC----cceeeEEEcCC
Confidence 998877766654432 33445555553
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.7e-15 Score=174.92 Aligned_cols=154 Identities=19% Similarity=0.285 Sum_probs=127.8
Q ss_pred ccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEE
Q 006229 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV 580 (655)
Q Consensus 501 ~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVr 580 (655)
++.+.+.+||+||.|+.|.+|..... .....+...-.......++++..+.+|.+.|..++|+|++.+|++++.|.+|.
T Consensus 76 R~S~dG~~lAsGSDD~~v~iW~~~~~-~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsVi 154 (942)
T KOG0973|consen 76 RFSPDGSYLASGSDDRLVMIWERAEI-GSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVI 154 (942)
T ss_pred EECCCCCeEeeccCcceEEEeeeccc-CCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEE
Confidence 56667789999999999999955431 11111111112334556789999999999999999999999999999999999
Q ss_pred EEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccc-eeeeeceeeEEEecC
Q 006229 581 LWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKC-IFVSTAIGSCFFAPT 655 (655)
Q Consensus 581 IWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~-~v~s~~Vss~~F~P~ 655 (655)
|||..+++++.++++|...|..|.|+|-|+||||-+.|++|+||++.+..+.+.+..+-. ......+..+.|+||
T Consensus 155 iwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPD 230 (942)
T KOG0973|consen 155 IWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPD 230 (942)
T ss_pred EEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCC
Confidence 999999999999999999999999999999999999999999999998888888877644 344556789999997
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.2e-15 Score=161.10 Aligned_cols=121 Identities=22% Similarity=0.296 Sum_probs=106.4
Q ss_pred ccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCC---------CEEE
Q 006229 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDG---------KLLA 571 (655)
Q Consensus 501 ~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG---------~lLa 571 (655)
++.+.+.+|+++|.|+++++|....+ .++..+.+|+..|+.+.|+|+| ..|+
T Consensus 366 k~n~tg~LLaS~SdD~TlkiWs~~~~-------------------~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~ 426 (524)
T KOG0273|consen 366 KWNPTGSLLASCSDDGTLKIWSMGQS-------------------NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLA 426 (524)
T ss_pred EECCCCceEEEecCCCeeEeeecCCC-------------------cchhhhhhhccceeeEeecCCCCccCCCcCCceEE
Confidence 33444569999999999999954333 4566788999999999999865 3699
Q ss_pred EEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccc
Q 006229 572 TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKC 640 (655)
Q Consensus 572 Sgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~ 640 (655)
+++.|.+|++||+..+.++++|..|...|++|+|+|+|+|||+|+.||.|.||++++++.++.+.....
T Consensus 427 sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~ 495 (524)
T KOG0273|consen 427 SASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGG 495 (524)
T ss_pred EeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCe
Confidence 999999999999999999999999999999999999999999999999999999999999998877655
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.8e-15 Score=167.28 Aligned_cols=151 Identities=21% Similarity=0.293 Sum_probs=117.6
Q ss_pred CCceEEEEecCCCC--------cccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEee
Q 006229 480 SSKSLLMFGSDGMG--------SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI 551 (655)
Q Consensus 480 ~d~s~l~ws~dg~~--------~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l 551 (655)
.-+-+++|.-..+. ....+...+.+.+.++++|+.|+.|++|+...+ -|+.++
T Consensus 328 klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg-------------------fC~vTF 388 (893)
T KOG0291|consen 328 KLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG-------------------FCFVTF 388 (893)
T ss_pred ccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCc-------------------eEEEEe
Confidence 34566777655421 234445567788889999999999999977665 578888
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCC--------------------------------------------CC
Q 006229 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE--------------------------------------------SF 587 (655)
Q Consensus 552 ~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~--------------------------------------------t~ 587 (655)
..|++.|+.+.|+.+|+.|++.|.||+||.||+. +|
T Consensus 389 teHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG 468 (893)
T KOG0291|consen 389 TEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG 468 (893)
T ss_pred ccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC
Confidence 9999999999999999999999999999999753 45
Q ss_pred eEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eEEEEEecccceeeeeceeeEEEecC
Q 006229 588 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENV-RKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 588 ~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg-~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
+.+..+.||+++|.+++|+|++..|+|+|.|+|||+||+-.. ..+.++.. ...+..+.|+|+
T Consensus 469 qllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i------~sdvl~vsfrPd 531 (893)
T KOG0291|consen 469 QLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEI------RSDVLAVSFRPD 531 (893)
T ss_pred eeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEee------ccceeEEEEcCC
Confidence 667778899999999999999999999999999999998543 22333332 223446777765
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.2e-16 Score=168.99 Aligned_cols=146 Identities=18% Similarity=0.246 Sum_probs=116.6
Q ss_pred ceeccCCCCceEEEEecCCCC---------cccccCcccCCCC-cEEEeccCCCcEEEEecCCCCCCCCccccccccCCC
Q 006229 473 TLQHNGASSKSLLMFGSDGMG---------SLTSAPNQLTDMD-RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKG 542 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~---------~lasss~~l~~~~-~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~ 542 (655)
....++|+|-++.+|+-++.- ...+-...+.+.+ ..++++|.|++|++|..-..
T Consensus 110 P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~---------------- 173 (794)
T KOG0276|consen 110 PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSP---------------- 173 (794)
T ss_pred CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCC----------------
Confidence 466778889999999888621 1111122233332 45689999999999944333
Q ss_pred ceeeeEEeecCCCCCeeEEEEcC--CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCc
Q 006229 543 FTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620 (655)
Q Consensus 543 ~t~~~v~~l~gH~~~V~sl~fSp--dG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~Dgt 620 (655)
.+..++.+|...|+||+|-+ |..+|+||+.|.+|+|||..+..|+.+|+||+..|.+++|+|.-..|+|||+||+
T Consensus 174 ---~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGT 250 (794)
T KOG0276|consen 174 ---HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGT 250 (794)
T ss_pred ---CCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCcc
Confidence 35678889999999999998 4459999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCeEEEEEec
Q 006229 621 VRVWDTENVRKLTFICC 637 (655)
Q Consensus 621 VrVWDl~tg~~v~~l~~ 637 (655)
||||+..+-+...++..
T Consensus 251 vriWhs~Ty~lE~tLn~ 267 (794)
T KOG0276|consen 251 VRIWNSKTYKLEKTLNY 267 (794)
T ss_pred EEEecCcceehhhhhhc
Confidence 99999887655444433
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.9e-15 Score=164.11 Aligned_cols=166 Identities=16% Similarity=0.219 Sum_probs=121.3
Q ss_pred ceeccCCCCceEEEEecCCCCcc----------cccCccc-CCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCC
Q 006229 473 TLQHNGASSKSLLMFGSDGMGSL----------TSAPNQL-TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGK 541 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~~l----------asss~~l-~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~ 541 (655)
..+.++|.|.++.+|++...... .+....+ ......+++|++|+.|.+|+...+... .+.
T Consensus 86 ~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~---l~~------ 156 (735)
T KOG0308|consen 86 KTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTAT---LVA------ 156 (735)
T ss_pred CceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchh---hhh------
Confidence 35566666777777766543200 0001111 333345667777777777765544210 000
Q ss_pred CceeeeEEeec-CCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCc
Q 006229 542 GFTFTEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620 (655)
Q Consensus 542 ~~t~~~v~~l~-gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~Dgt 620 (655)
.+....+..+. |+...|++++-++.|..|++|+..+.++|||.++++.+..++||++.|.+|..++||+.++|+|.||+
T Consensus 157 s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgt 236 (735)
T KOG0308|consen 157 SFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGT 236 (735)
T ss_pred hccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCce
Confidence 01112223333 88999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCeEEEEEecccceeeeece
Q 006229 621 VRVWDTENVRKLTFICCYKCIFVSTAI 647 (655)
Q Consensus 621 VrVWDl~tg~~v~~l~~~~~~v~s~~V 647 (655)
|||||+.-.+|+.++..|...+.+..+
T Consensus 237 IrlWdLgqQrCl~T~~vH~e~VWaL~~ 263 (735)
T KOG0308|consen 237 IRLWDLGQQRCLATYIVHKEGVWALQS 263 (735)
T ss_pred EEeeeccccceeeeEEeccCceEEEee
Confidence 999999999999999999887765543
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.3e-15 Score=169.03 Aligned_cols=167 Identities=17% Similarity=0.249 Sum_probs=135.8
Q ss_pred ceeccCCCCceEEEEecCCCCcccc---------cCcccCCCCcEEEeccCCCcEEEEecCCCC----------------
Q 006229 473 TLQHNGASSKSLLMFGSDGMGSLTS---------APNQLTDMDRFVDDGSLDDNVESFLSPDDA---------------- 527 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~~las---------ss~~l~~~~~~LasGS~D~tV~vW~s~d~~---------------- 527 (655)
..+..++.+.++..|+......+.. ....+...+.++.+||.|.++++|+..++.
T Consensus 219 ~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~ 298 (537)
T KOG0274|consen 219 GFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLT 298 (537)
T ss_pred CeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEE
Confidence 3555666777777777654222111 122334346888999999999999877765
Q ss_pred --------CCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCC
Q 006229 528 --------DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW 599 (655)
Q Consensus 528 --------d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ 599 (655)
..+|..+++|++..+ .++..+.+|.+.|.|+..+ +.++++|+.|++|+|||+.++++++++.||+..
T Consensus 299 ~~~~~~~sgs~D~tVkVW~v~n~---~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~ 373 (537)
T KOG0274|consen 299 IDPFLLVSGSRDNTVKVWDVTNG---ACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGR 373 (537)
T ss_pred ccCceEeeccCCceEEEEeccCc---ceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcce
Confidence 236777788888865 6778888899999999997 889999999999999999999999999999999
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eEEEEEecccceeeee
Q 006229 600 ITDVRFSPSLSRLATSSADRTVRVWDTENV-RKLTFICCYKCIFVST 645 (655)
Q Consensus 600 ItsVafsPdg~~LaSgS~DgtVrVWDl~tg-~~v~~l~~~~~~v~s~ 645 (655)
|+++.+... .++++||.|++|++||++++ +|+.++.+|...+.+.
T Consensus 374 V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l 419 (537)
T KOG0274|consen 374 VYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSL 419 (537)
T ss_pred EEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccc
Confidence 999988765 89999999999999999999 9999999998876443
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.6e-15 Score=158.27 Aligned_cols=113 Identities=27% Similarity=0.375 Sum_probs=103.9
Q ss_pred EEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCe
Q 006229 509 VDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT 588 (655)
Q Consensus 509 LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~ 588 (655)
+++||.|.+|.+| .+..++...+++.|+.-|.|+.|+|||.+|+|++.||+|.|||=.+++
T Consensus 163 i~T~sdDn~v~ff-------------------eGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge 223 (603)
T KOG0318|consen 163 IATGSDDNTVAFF-------------------EGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGE 223 (603)
T ss_pred EEeccCCCeEEEe-------------------eCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCcc
Confidence 6677788887777 455667778888999999999999999999999999999999999999
Q ss_pred EEEEec---ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccc
Q 006229 589 VKSTLE---EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKC 640 (655)
Q Consensus 589 ~l~tl~---gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~ 640 (655)
.+..|. +|.+.|.+|+|+||+..|+|+|.|+++||||+.+.+++.++.....
T Consensus 224 ~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~ 278 (603)
T KOG0318|consen 224 KVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGST 278 (603)
T ss_pred EEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCc
Confidence 999998 9999999999999999999999999999999999999999988765
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.2e-15 Score=165.15 Aligned_cols=165 Identities=22% Similarity=0.257 Sum_probs=129.7
Q ss_pred CCCCceeccCCCCceEEEEecCC--------CCcccccCcccCCCCcEEEeccCCCcEEEEecCCCC-------------
Q 006229 469 ISRPTLQHNGASSKSLLMFGSDG--------MGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDA------------- 527 (655)
Q Consensus 469 ~s~~~~~~s~S~d~s~l~ws~dg--------~~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~------------- 527 (655)
++++.++++++.|+.+.+|+... ....+++...+...++.+.+.|.||+|+.|+.....
T Consensus 359 SpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Qf 438 (893)
T KOG0291|consen 359 SPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQF 438 (893)
T ss_pred CCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceee
Confidence 66778999999999999999875 223344444566677889999999999999754432
Q ss_pred -----C--CC--------CccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-EEE
Q 006229 528 -----D--PR--------DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-VKS 591 (655)
Q Consensus 528 -----d--~~--------d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~-~l~ 591 (655)
| +. .--+.+|.+.+| +.+..+.||.++|.+++|+|+|..|+|||+|+|||+||+-... .+.
T Consensus 439 scvavD~sGelV~AG~~d~F~IfvWS~qTG---qllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vE 515 (893)
T KOG0291|consen 439 SCVAVDPSGELVCAGAQDSFEIFVWSVQTG---QLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVE 515 (893)
T ss_pred eEEEEcCCCCEEEeeccceEEEEEEEeecC---eeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceee
Confidence 1 00 111255555555 7778889999999999999999999999999999999986542 344
Q ss_pred EecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEec
Q 006229 592 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICC 637 (655)
Q Consensus 592 tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~ 637 (655)
++ .+...|+.|+|+|+|+.|+.+..||.|.+||+..+..+..+.+
T Consensus 516 tl-~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~Idg 560 (893)
T KOG0291|consen 516 TL-EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDG 560 (893)
T ss_pred eE-eeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccc
Confidence 44 4888999999999999999999999999999998776655554
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.4e-15 Score=155.59 Aligned_cols=177 Identities=16% Similarity=0.251 Sum_probs=147.2
Q ss_pred CCCceeccCCCCceEEEEecCCCC--------cccccCcccCCCCcEEEeccCCCcEEEEecCCC---------------
Q 006229 470 SRPTLQHNGASSKSLLMFGSDGMG--------SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDD--------------- 526 (655)
Q Consensus 470 s~~~~~~s~S~d~s~l~ws~dg~~--------~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~--------------- 526 (655)
+.-.+.++++.+.++.+|+..... .-.+....++..+++++++|.|-.+++|+...-
T Consensus 118 p~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS 197 (406)
T KOG0295|consen 118 PSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVS 197 (406)
T ss_pred cCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCccccee
Confidence 334566677789999999887521 122444567888899999999999999964331
Q ss_pred ------------CCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec
Q 006229 527 ------------ADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE 594 (655)
Q Consensus 527 ------------~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~ 594 (655)
...+|..++.|+...+ .++.++.+|..-|..++.+.||.++++++.|-+|++|.+.++.|+..++
T Consensus 198 ~V~f~P~gd~ilS~srD~tik~We~~tg---~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR 274 (406)
T KOG0295|consen 198 SVFFLPLGDHILSCSRDNTIKAWECDTG---YCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELR 274 (406)
T ss_pred eEEEEecCCeeeecccccceeEEecccc---eeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhh
Confidence 0456777788888877 6788999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEEEcCC---------------CCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEec
Q 006229 595 EHTQWITDVRFSPS---------------LSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAP 654 (655)
Q Consensus 595 gH~~~ItsVafsPd---------------g~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P 654 (655)
+|...|-|++|.|. +.+++++|.|++||+||+.++.|+.++.+|.+.+. +++|||
T Consensus 275 ~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr-----~~af~p 344 (406)
T KOG0295|consen 275 EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVR-----GVAFSP 344 (406)
T ss_pred ccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceee-----eeEEcC
Confidence 99999999999883 24899999999999999999999999999998765 555555
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.7e-15 Score=149.67 Aligned_cols=142 Identities=22% Similarity=0.317 Sum_probs=114.0
Q ss_pred CCCceeccCCCCceEEEEecCCCCcccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEE
Q 006229 470 SRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQ 549 (655)
Q Consensus 470 s~~~~~~s~S~d~s~l~ws~dg~~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~ 549 (655)
.+..+..+..+..+.+.|+|..+ .+++.||+|++||+|...+... ..-+
T Consensus 18 kd~ev~~pP~DsIS~l~FSP~~~--------------~~~~A~SWD~tVR~wevq~~g~-----------------~~~k 66 (347)
T KOG0647|consen 18 KDYEVPNPPEDSISALAFSPQAD--------------NLLAAGSWDGTVRIWEVQNSGQ-----------------LVPK 66 (347)
T ss_pred cceecCCCcccchheeEeccccC--------------ceEEecccCCceEEEEEecCCc-----------------ccch
Confidence 33344455556778888888433 5788999999999997665310 0113
Q ss_pred eecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECC
Q 006229 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS--RLATSSADRTVRVWDTE 627 (655)
Q Consensus 550 ~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~--~LaSgS~DgtVrVWDl~ 627 (655)
....|.++|.|++|+.||..+++|+.|+.+++||+.++. +..+-.|...|.++.|-+... .|+|||.|++||.||.|
T Consensus 67 a~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R 145 (347)
T KOG0647|consen 67 AQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTR 145 (347)
T ss_pred hhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccC
Confidence 445789999999999999999999999999999999995 447778999999999988766 79999999999999999
Q ss_pred CCeEEEEEecccceee
Q 006229 628 NVRKLTFICCYKCIFV 643 (655)
Q Consensus 628 tg~~v~~l~~~~~~v~ 643 (655)
....+.++.-....+.
T Consensus 146 ~~~pv~t~~LPeRvYa 161 (347)
T KOG0647|consen 146 SSNPVATLQLPERVYA 161 (347)
T ss_pred CCCeeeeeeccceeee
Confidence 9888888877665544
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-14 Score=154.43 Aligned_cols=166 Identities=20% Similarity=0.278 Sum_probs=126.4
Q ss_pred ceeccCCCCceEEEEecCCCC--------cccccCcccCCCCcEEEeccCCCcEEEEecCCCCC----------------
Q 006229 473 TLQHNGASSKSLLMFGSDGMG--------SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDAD---------------- 528 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~--------~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d---------------- 528 (655)
....+++.|+..++|+..... ...+....+.+..+.++++|.|..|++|-+.....
T Consensus 232 ~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~ 311 (506)
T KOG0289|consen 232 SKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSL 311 (506)
T ss_pred CcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeee
Confidence 566778888899998876532 23344556677778899999999999996655431
Q ss_pred ----------CCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCC
Q 006229 529 ----------PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ 598 (655)
Q Consensus 529 ----------~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~ 598 (655)
..+.+..+.+..++..+..+... ...-.+++.+|||||.+|.+|..|+.|+|||+.+...+..|.+|++
T Consensus 312 h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~-~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~ 390 (506)
T KOG0289|consen 312 HPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE-TSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTG 390 (506)
T ss_pred ccCCcEEEEecCCceEEEEEccCCcEEEEEeec-cccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCC
Confidence 11222233333444333322211 2334589999999999999999999999999999999999999999
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEeccc
Q 006229 599 WITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYK 639 (655)
Q Consensus 599 ~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~ 639 (655)
.|+.|+|+.+|-||++++.|+.|++||+|.-+.+.+|.-..
T Consensus 391 ~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~ 431 (506)
T KOG0289|consen 391 PVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDE 431 (506)
T ss_pred ceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccc
Confidence 99999999999999999999999999999888777776544
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.8e-14 Score=145.83 Aligned_cols=179 Identities=17% Similarity=0.208 Sum_probs=139.5
Q ss_pred CCCCceeccCCCCceEEEEecCCC---------CcccccCcccCCCCcEEEeccCCCcEEEEecCCCC------------
Q 006229 469 ISRPTLQHNGASSKSLLMFGSDGM---------GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDA------------ 527 (655)
Q Consensus 469 ~s~~~~~~s~S~d~s~l~ws~dg~---------~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~------------ 527 (655)
+.+...+.+++.|++++.|+.... ..++...........+|.+|+.|+++++|+.....
T Consensus 99 ~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqlt 178 (338)
T KOG0265|consen 99 MRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLT 178 (338)
T ss_pred ccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEE
Confidence 456678889999999999998752 11221111122223568899999999999887332
Q ss_pred -------------CCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC----CeEE
Q 006229 528 -------------DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVK 590 (655)
Q Consensus 528 -------------d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t----~~~l 590 (655)
.+=+..+++|+..+. ....++.||.+.|+.+..+++|.++.+-+.|.+|++||++. -+|+
T Consensus 179 Av~f~d~s~qv~sggIdn~ikvWd~r~~---d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v 255 (338)
T KOG0265|consen 179 AVGFKDTSDQVISGGIDNDIKVWDLRKN---DGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCV 255 (338)
T ss_pred EEEecccccceeeccccCceeeeccccC---cceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceE
Confidence 111233477777665 45677899999999999999999999999999999999974 3678
Q ss_pred EEecccCCC----EEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 591 STLEEHTQW----ITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 591 ~tl~gH~~~----ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
..+.||... ...++|+|+++.+..|+.|+.|+|||.....++..+.+|... |..+.|||.
T Consensus 256 ~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gs-----vn~~~Fhp~ 319 (338)
T KOG0265|consen 256 KIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGS-----VNEVDFHPT 319 (338)
T ss_pred EEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCccee-----EEEeeecCC
Confidence 888887543 457889999999999999999999999999999999988654 557888884
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-14 Score=154.64 Aligned_cols=132 Identities=22% Similarity=0.316 Sum_probs=108.6
Q ss_pred cEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCC
Q 006229 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE 585 (655)
Q Consensus 507 ~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSp-dG~lLaSgs~DgtVrIWDl~ 585 (655)
-.+++|+.|.+|++|+...... ..........+.+|+..|..|+|++ +..+|++++.|+.+.|||++
T Consensus 191 g~Lls~~~d~~i~lwdi~~~~~------------~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R 258 (422)
T KOG0264|consen 191 GTLLSGSDDHTICLWDINAESK------------EDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTR 258 (422)
T ss_pred eeEeeccCCCcEEEEecccccc------------CCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcC
Confidence 4578999999999997655421 1223346677889999999999999 67799999999999999999
Q ss_pred --CCeEEEEecccCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-eEEEEEecccceeeeeceeeEEEecC
Q 006229 586 --SFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENV-RKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 586 --t~~~l~tl~gH~~~ItsVafsP-dg~~LaSgS~DgtVrVWDl~tg-~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
+.++.+...+|+..|+||+|+| ++..|||||.|++|+|||+|+. .+++++.+|...+. .+.|+|.
T Consensus 259 ~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~-----~V~WSPh 327 (422)
T KOG0264|consen 259 SNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVF-----QVEWSPH 327 (422)
T ss_pred CCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceE-----EEEeCCC
Confidence 5677778889999999999999 5567999999999999999975 46788888876554 6778773
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.2e-14 Score=143.87 Aligned_cols=158 Identities=22% Similarity=0.227 Sum_probs=114.1
Q ss_pred ceeccCCCCceEEEEecCCCCc---------ccccCcccCCCC-cEEEeccCCCcEEEEecCCCCCCCCccccccccCCC
Q 006229 473 TLQHNGASSKSLLMFGSDGMGS---------LTSAPNQLTDMD-RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKG 542 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~~---------lasss~~l~~~~-~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~ 542 (655)
....+++.|+++.+|+...... ..+-+....... +.+.++|+|++|++|+..-.
T Consensus 74 ~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~---------------- 137 (311)
T KOG0277|consen 74 NQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP---------------- 137 (311)
T ss_pred ceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC----------------
Confidence 4555666778888887433111 001111112222 33566699999999955443
Q ss_pred ceeeeEEeecCCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcC-CCCEEEEEeCCCc
Q 006229 543 FTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRT 620 (655)
Q Consensus 543 ~t~~~v~~l~gH~~~V~sl~fSp-dG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsP-dg~~LaSgS~Dgt 620 (655)
..+.++.+|..-|....||| .+.+++++|.|++++|||++..-....+..|...|.|+.|+. +...|+||+.|+.
T Consensus 138 ---~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~ 214 (311)
T KOG0277|consen 138 ---NSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNL 214 (311)
T ss_pred ---cceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCce
Confidence 46778999999999999999 788999999999999999975433334899999999999997 5678999999999
Q ss_pred EEEEECCCCe-EEEEEecccceeeeeceeeEEEec
Q 006229 621 VRVWDTENVR-KLTFICCYKCIFVSTAIGSCFFAP 654 (655)
Q Consensus 621 VrVWDl~tg~-~v~~l~~~~~~v~s~~Vss~~F~P 654 (655)
||+||+++-+ .+..+.+|. .+|..+.|+|
T Consensus 215 vr~wDir~~r~pl~eL~gh~-----~AVRkvk~Sp 244 (311)
T KOG0277|consen 215 VRGWDIRNLRTPLFELNGHG-----LAVRKVKFSP 244 (311)
T ss_pred EEEEehhhccccceeecCCc-----eEEEEEecCc
Confidence 9999999753 345555553 3455677766
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.8e-14 Score=145.89 Aligned_cols=182 Identities=18% Similarity=0.217 Sum_probs=143.2
Q ss_pred CCCCceeccCCCCceEEEEecCCCCc---------ccccCcccCCCCcEEEeccCCCcEEEEecCCCC------------
Q 006229 469 ISRPTLQHNGASSKSLLMFGSDGMGS---------LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDA------------ 527 (655)
Q Consensus 469 ~s~~~~~~s~S~d~s~l~ws~dg~~~---------lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~------------ 527 (655)
.++.+.+++++.|..+++|+..+... -++-...+...+..|.+++.|++|+.|++..+.
T Consensus 56 ~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~v 135 (338)
T KOG0265|consen 56 HPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFV 135 (338)
T ss_pred CCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhcccccee
Confidence 56778999999999999999877322 222233445666789999999999999998886
Q ss_pred ---------------CCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEE
Q 006229 528 ---------------DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST 592 (655)
Q Consensus 528 ---------------d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~t 592 (655)
...|+..++||+.+- ..++++ ...-.++++.|.-++.-+.+|+-|+.|++||++....+.+
T Consensus 136 Ns~~p~rrg~~lv~SgsdD~t~kl~D~R~k---~~~~t~-~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~ 211 (338)
T KOG0265|consen 136 NSLDPSRRGPQLVCSGSDDGTLKLWDIRKK---EAIKTF-ENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYT 211 (338)
T ss_pred eecCccccCCeEEEecCCCceEEEEeeccc---chhhcc-ccceeEEEEEecccccceeeccccCceeeeccccCcceEE
Confidence 233555577766643 222222 2245689999999999999999999999999999999999
Q ss_pred ecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC----CCeEEEEEecccceeeeeceeeEEEecC
Q 006229 593 LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE----NVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 593 l~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~----tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
+.||.+.|+.|..+|+|.++.|-+.|.+|++||++ .-+|+..+.++.-.+ +...-.|.|+|+
T Consensus 212 lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnf-eknlL~cswsp~ 277 (338)
T KOG0265|consen 212 LSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNF-EKNLLKCSWSPN 277 (338)
T ss_pred eecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhh-hhhcceeeccCC
Confidence 99999999999999999999999999999999998 356788888765433 333457888885
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.3e-15 Score=166.47 Aligned_cols=131 Identities=18% Similarity=0.298 Sum_probs=117.6
Q ss_pred ccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEE
Q 006229 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV 580 (655)
Q Consensus 501 ~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVr 580 (655)
.|++..-+|.++-..+.|.+|+..-+ .++..|..|.++|..|+|||++.+|+|||.|.+|+
T Consensus 16 sFHP~rPwILtslHsG~IQlWDYRM~-------------------tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIk 76 (1202)
T KOG0292|consen 16 SFHPKRPWILTSLHSGVIQLWDYRMG-------------------TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIK 76 (1202)
T ss_pred ecCCCCCEEEEeecCceeeeehhhhh-------------------hHHhhhhccCCccceeeecCCCCeEEecCCccEEE
Confidence 34555568888888999999966554 35667789999999999999999999999999999
Q ss_pred EEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 581 LWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 581 IWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
||+..+.+|+.++.||-+.|..+.|++.-.+|+|+|+|-|||||+..++.|+..+++|.-.+- +..|||+
T Consensus 77 VWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVM-----cAqFhpt 146 (1202)
T KOG0292|consen 77 VWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVM-----CAQFHPT 146 (1202)
T ss_pred EEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEE-----eeccCCc
Confidence 999999999999999999999999999999999999999999999999999999999987655 6778884
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.4e-14 Score=157.26 Aligned_cols=141 Identities=17% Similarity=0.234 Sum_probs=112.1
Q ss_pred CCceeccCCCCceEEEEecCCCCc---------------ccccCcccCCC-CcEEEeccCCCcEEEEecCCCCCCCCccc
Q 006229 471 RPTLQHNGASSKSLLMFGSDGMGS---------------LTSAPNQLTDM-DRFVDDGSLDDNVESFLSPDDADPRDRVG 534 (655)
Q Consensus 471 ~~~~~~s~S~d~s~l~ws~dg~~~---------------lasss~~l~~~-~~~LasGS~D~tV~vW~s~d~~d~~d~~~ 534 (655)
+...+++++.|+++.+|+....+. -.+....+.+. ..+|++|+.|++|++|+...+
T Consensus 87 d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg-------- 158 (493)
T PTZ00421 87 DPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERG-------- 158 (493)
T ss_pred CCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCC--------
Confidence 345788899999999998754211 01112234444 368999999999999966543
Q ss_pred cccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCC-EEEEEEcCCCCEEE
Q 006229 535 RSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW-ITDVRFSPSLSRLA 613 (655)
Q Consensus 535 ~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~-ItsVafsPdg~~La 613 (655)
..+..+.+|...|.+|+|+|+|.+|++|+.|++|+|||+++++.+.++.+|.+. +..+.|++++..|+
T Consensus 159 -----------~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~iv 227 (493)
T PTZ00421 159 -----------KAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLII 227 (493)
T ss_pred -----------eEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEE
Confidence 355677889999999999999999999999999999999999999999999875 45788999988888
Q ss_pred EEe----CCCcEEEEECCCCe
Q 006229 614 TSS----ADRTVRVWDTENVR 630 (655)
Q Consensus 614 SgS----~DgtVrVWDl~tg~ 630 (655)
+++ .|++|+|||+++..
T Consensus 228 t~G~s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 228 TLGCSKSQQRQIMLWDTRKMA 248 (493)
T ss_pred EEecCCCCCCeEEEEeCCCCC
Confidence 765 47899999998754
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.5e-15 Score=161.11 Aligned_cols=117 Identities=20% Similarity=0.258 Sum_probs=103.1
Q ss_pred CCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 006229 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (655)
Q Consensus 503 ~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIW 582 (655)
.-..+++.+++.|+.|++|++-+. .++++++.+|..+|.+++|+.+|..|+|+|.|++|++|
T Consensus 224 p~~~hLlLS~gmD~~vklW~vy~~------------------~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlw 285 (503)
T KOG0282|consen 224 PKKGHLLLSGGMDGLVKLWNVYDD------------------RRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLW 285 (503)
T ss_pred cceeeEEEecCCCceEEEEEEecC------------------cceehhhhcchhhhhhhhccccCCeeeeeecceeeeee
Confidence 336689999999999999966553 26899999999999999999999999999999999999
Q ss_pred eCCCCeEEEEecccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeEEEEEecc
Q 006229 583 CTESFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENVRKLTFICCY 638 (655)
Q Consensus 583 Dl~t~~~l~tl~gH~~~ItsVafsPdg-~~LaSgS~DgtVrVWDl~tg~~v~~l~~~ 638 (655)
|+++|+++..|. -...++||.|+|++ ..+++|+.|+.|+.||+|+++.+.++..|
T Consensus 286 DtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~h 341 (503)
T KOG0282|consen 286 DTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRH 341 (503)
T ss_pred ccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhh
Confidence 999999999985 45578999999998 78999999999999999998866555444
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.2e-14 Score=142.49 Aligned_cols=110 Identities=21% Similarity=0.328 Sum_probs=99.8
Q ss_pred cEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 006229 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (655)
Q Consensus 507 ~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t 586 (655)
.+..+++.|++|++|++..+ .+++++.+|...|..++.+.|...|++|+.|+.|.+||+.+
T Consensus 30 nY~ltcGsdrtvrLWNp~rg-------------------~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~T 90 (307)
T KOG0316|consen 30 NYCLTCGSDRTVRLWNPLRG-------------------ALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNT 90 (307)
T ss_pred CEEEEcCCCceEEeeccccc-------------------ceeeeecCCCceeeeccccccccccccCCCCceEEEEEccc
Confidence 37778889999999976665 58899999999999999999999999999999999999999
Q ss_pred CeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC--CeEEEEE
Q 006229 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN--VRKLTFI 635 (655)
Q Consensus 587 ~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~t--g~~v~~l 635 (655)
|+.++.|.||...|+.|+|..+...++|||.|.+||+||.|+ .+.+.+|
T Consensus 91 Gkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQil 141 (307)
T KOG0316|consen 91 GKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQIL 141 (307)
T ss_pred CeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchh
Confidence 999999999999999999999999999999999999999975 3444443
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.9e-14 Score=148.38 Aligned_cols=174 Identities=15% Similarity=0.218 Sum_probs=145.5
Q ss_pred CCceeccCCCCceEEEEecCCCCc------cc--ccCcccCCCCcEEEeccCCCcEEEEecCCCC---------------
Q 006229 471 RPTLQHNGASSKSLLMFGSDGMGS------LT--SAPNQLTDMDRFVDDGSLDDNVESFLSPDDA--------------- 527 (655)
Q Consensus 471 ~~~~~~s~S~d~s~l~ws~dg~~~------la--sss~~l~~~~~~LasGS~D~tV~vW~s~d~~--------------- 527 (655)
....+.+++.|.++.+|+...... .+ +-...+.....|+.+++.|+.|+.|+....+
T Consensus 162 ~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L 241 (460)
T KOG0285|consen 162 GNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCL 241 (460)
T ss_pred CceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEE
Confidence 346888999999999999876211 11 1122456666889999999999999876543
Q ss_pred -----------CCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccc
Q 006229 528 -----------DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH 596 (655)
Q Consensus 528 -----------d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH 596 (655)
.++|.+.++||+..- ..|..+.||+.+|.+|.+.|-...++|||+|++||+||++.++...++..|
T Consensus 242 ~lhPTldvl~t~grDst~RvWDiRtr---~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~h 318 (460)
T KOG0285|consen 242 DLHPTLDVLVTGGRDSTIRVWDIRTR---ASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHH 318 (460)
T ss_pred eccccceeEEecCCcceEEEeeeccc---ceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecc
Confidence 466788899988764 678889999999999999997778999999999999999999999999999
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeecee
Q 006229 597 TQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIG 648 (655)
Q Consensus 597 ~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vs 648 (655)
...|.+++.+|....+||+|.| .|+-|++-.|+.+..+.+|...+.+..++
T Consensus 319 kksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~n 369 (460)
T KOG0285|consen 319 KKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVN 369 (460)
T ss_pred cceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeec
Confidence 9999999999999999999999 78999999999888888887776666543
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.9e-13 Score=133.92 Aligned_cols=159 Identities=24% Similarity=0.390 Sum_probs=124.8
Q ss_pred ceeccCCCCceEEEEecCCCCc--------ccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCce
Q 006229 473 TLQHNGASSKSLLMFGSDGMGS--------LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFT 544 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~~--------lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t 544 (655)
..+..++.++.+.+|+.+.... ..+....+.+.+.++++++.|+.|++|+...+
T Consensus 22 ~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~------------------ 83 (289)
T cd00200 22 KLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG------------------ 83 (289)
T ss_pred CEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc------------------
Confidence 4566666688888888764311 11112233445568889999999999965443
Q ss_pred eeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 006229 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (655)
Q Consensus 545 ~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVW 624 (655)
..+..+..|...|.+++|+++++++++++.|+.|++||+++++.+..+.+|...|++++|+|++.+|++++.|+.|++|
T Consensus 84 -~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~ 162 (289)
T cd00200 84 -ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLW 162 (289)
T ss_pred -cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEE
Confidence 3445566888899999999999999999999999999999999999999999999999999999999999989999999
Q ss_pred ECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 625 DTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 625 Dl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
|+++++.+..+..+.. .+.++.|+|+
T Consensus 163 d~~~~~~~~~~~~~~~-----~i~~~~~~~~ 188 (289)
T cd00200 163 DLRTGKCVATLTGHTG-----EVNSVAFSPD 188 (289)
T ss_pred EccccccceeEecCcc-----ccceEEECCC
Confidence 9999888888876543 3446666663
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.4e-13 Score=156.49 Aligned_cols=134 Identities=18% Similarity=0.184 Sum_probs=101.3
Q ss_pred eccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCC-CCEEEEEeCCCcEEEEeCCCC--
Q 006229 511 DGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESF-- 587 (655)
Q Consensus 511 sGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpd-G~lLaSgs~DgtVrIWDl~t~-- 587 (655)
+++.+..+..|....+ +.+.++++|+..+. ..+..+.+|.+.|.+|+|+|+ +.+|+||+.|++|+|||+.++
T Consensus 35 a~n~~~~A~~w~~~gG--G~~gvI~L~~~~r~---~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~ 109 (568)
T PTZ00420 35 ACSSGFVAVPWEVEGG--GLIGAIRLENQMRK---PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDE 109 (568)
T ss_pred eeCCCeEEEEEEcCCC--CceeEEEeeecCCC---ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCc
Confidence 3334444455654332 23445555555443 467788999999999999996 789999999999999999764
Q ss_pred ------eEEEEecccCCCEEEEEEcCCCCE-EEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 588 ------TVKSTLEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 588 ------~~l~tl~gH~~~ItsVafsPdg~~-LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
.++..+.+|...|++|+|+|++.. |+|+|.|++|+|||++++..+..+..+ ..|.++.|+|+
T Consensus 110 ~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~------~~V~Slswspd 178 (568)
T PTZ00420 110 SVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMP------KKLSSLKWNIK 178 (568)
T ss_pred cccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecC------CcEEEEEECCC
Confidence 234578899999999999999876 579999999999999999877766532 23567888875
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.4e-14 Score=157.13 Aligned_cols=172 Identities=15% Similarity=0.213 Sum_probs=132.3
Q ss_pred CceeccCCCCceEEEEecCCCCccc--------ccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccc-------
Q 006229 472 PTLQHNGASSKSLLMFGSDGMGSLT--------SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRS------- 536 (655)
Q Consensus 472 ~~~~~s~S~d~s~l~ws~dg~~~la--------sss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l------- 536 (655)
-..+.++|+|-++++|+-.....++ +-...|.+.++.|+++|.|.+||+|+...-.......+.+
T Consensus 105 yPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~ 184 (1202)
T KOG0292|consen 105 YPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQ 184 (1202)
T ss_pred CceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhcc
Confidence 3577889999999999987643322 2234778888999999999999999764322111000100
Q ss_pred ---cccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC--eEEEEecccCCCEEEEEEcCCCCE
Q 006229 537 ---AEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF--TVKSTLEEHTQWITDVRFSPSLSR 611 (655)
Q Consensus 537 ---~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~--~~l~tl~gH~~~ItsVafsPdg~~ 611 (655)
.++......-....+.||...|+-++|+|.-.+|+||+.|+.|++|.+... ..+.++.||...|+||-|+|.-.+
T Consensus 185 ~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~l 264 (1202)
T KOG0292|consen 185 QGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDL 264 (1202)
T ss_pred ccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccce
Confidence 111111122344678899999999999999999999999999999998654 357788999999999999999999
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEEecccceee
Q 006229 612 LATSSADRTVRVWDTENVRKLTFICCYKCIFV 643 (655)
Q Consensus 612 LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~ 643 (655)
|+|.|+|++|||||+...+++.+|......+.
T Consensus 265 IlSnsEDksirVwDm~kRt~v~tfrrendRFW 296 (1202)
T KOG0292|consen 265 ILSNSEDKSIRVWDMTKRTSVQTFRRENDRFW 296 (1202)
T ss_pred eEecCCCccEEEEecccccceeeeeccCCeEE
Confidence 99999999999999999999999976655544
|
|
| >KOG4594 consensus Sequence-specific single-stranded-DNA-binding protein [Replication, recombination and repair; Transcription; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.5e-15 Score=150.54 Aligned_cols=77 Identities=32% Similarity=0.735 Sum_probs=65.7
Q ss_pred ccchHHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCCCCCCCCCchHHHHHHHHHHHhhhhcc----Cccchhhhhhh
Q 006229 4 NNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFWDIFIARTN----EKHSESAASYI 79 (655)
Q Consensus 4 ~~~~~~~~L~~yIydyl~k~~~~~tA~~f~~e~~~~~~~~~~d~~~~fL~EWw~~FWd~f~a~~~----~~~S~~a~qYi 79 (655)
++-.|+++|..||||||++-+..++|+.||.|..+.++ +.+-.+.+||++|||+|||+|+|... +.||..++.+.
T Consensus 12 Sd~qArekLa~YvYEYLlhvgaqksaqtflseirwekn-itlge~p~FLhsWWcvFwDLYcAAPeRRd~c~HSsEAKaFh 90 (354)
T KOG4594|consen 12 SDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKN-ITLGEPPGFLHSWWCVFWDLYCAAPERRDTCEHSSEAKAFH 90 (354)
T ss_pred cchhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhh-hhccCCcchhhhhHHHHHHHhhcCccccCcccccHhhhhhh
Confidence 45678999999999999999999999999999988776 45666789999999999999999444 46777777766
Q ss_pred HH
Q 006229 80 ES 81 (655)
Q Consensus 80 q~ 81 (655)
+.
T Consensus 91 dy 92 (354)
T KOG4594|consen 91 DY 92 (354)
T ss_pred hh
Confidence 64
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.9e-14 Score=142.09 Aligned_cols=122 Identities=20% Similarity=0.260 Sum_probs=103.8
Q ss_pred CCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcC-CCCEEEEEeCCCcEEEE
Q 006229 504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLW 582 (655)
Q Consensus 504 ~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSp-dG~lLaSgs~DgtVrIW 582 (655)
.++..+++++-||++++|+.... -.++..++.|...|.+|+|++ +...++++|.|++||||
T Consensus 71 ~~e~~~~~a~GDGSLrl~d~~~~------------------s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW 132 (311)
T KOG0277|consen 71 NHENQVIAASGDGSLRLFDLTMP------------------SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLW 132 (311)
T ss_pred CCcceEEEEecCceEEEeccCCC------------------CcchhHHHhhhhheEEeccccccceeEEeeccCCceEee
Confidence 34467888999999999963222 247788899999999999999 66788889999999999
Q ss_pred eCCCCeEEEEecccCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEEecccceee
Q 006229 583 CTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFV 643 (655)
Q Consensus 583 Dl~t~~~l~tl~gH~~~ItsVafsP-dg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~ 643 (655)
|..-...+.+|.||...|+...|+| ....++++|.|++++|||++.......|..|...+.
T Consensus 133 ~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil 194 (311)
T KOG0277|consen 133 DPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEIL 194 (311)
T ss_pred cCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeE
Confidence 9999999999999999999999999 568999999999999999997666656877775443
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.1e-14 Score=140.30 Aligned_cols=171 Identities=17% Similarity=0.172 Sum_probs=132.9
Q ss_pred CCCceeccCCCCceEEEEec-CCC-------CcccccCcccCCCCcEEEeccCCCcEEEEecCCCCCC------------
Q 006229 470 SRPTLQHNGASSKSLLMFGS-DGM-------GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADP------------ 529 (655)
Q Consensus 470 s~~~~~~s~S~d~s~l~ws~-dg~-------~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~------------ 529 (655)
..+.++.+++.|.+.-+|.. +|+ ..-++...+++-.++.+.+||.|.++++|++..++..
T Consensus 20 ~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~ 99 (327)
T KOG0643|consen 20 REGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRV 99 (327)
T ss_pred CCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEE
Confidence 44567888888777777766 442 1224445566667788999999999999999888610
Q ss_pred ------------------CCccccccccCCCc----eeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 006229 530 ------------------RDRVGRSAEVGKGF----TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF 587 (655)
Q Consensus 530 ------------------~d~~~~l~d~~~~~----t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~ 587 (655)
....+.+.++.... .-.++..+..+.++++...|+|-+..|++|..||.|.+||++++
T Consensus 100 ~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g 179 (327)
T KOG0643|consen 100 DFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTG 179 (327)
T ss_pred eeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccC
Confidence 11112333333211 22346677788899999999999999999999999999999997
Q ss_pred -eEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccc
Q 006229 588 -TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKC 640 (655)
Q Consensus 588 -~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~ 640 (655)
+.+..-+.|+..|++++|++|..+++|+|.|.+.++||+++.+++.++.+...
T Consensus 180 ~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~P 233 (327)
T KOG0643|consen 180 KELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERP 233 (327)
T ss_pred ceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeeccc
Confidence 56667789999999999999999999999999999999999999999876544
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.8e-13 Score=133.05 Aligned_cols=159 Identities=24% Similarity=0.364 Sum_probs=124.8
Q ss_pred ceeccCCCCceEEEEecCCCCcc--------cccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCce
Q 006229 473 TLQHNGASSKSLLMFGSDGMGSL--------TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFT 544 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~~l--------asss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t 544 (655)
..+..++.++.+.+|+....... .+....+.+...++++++.|+.|.+|+....
T Consensus 64 ~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------------------ 125 (289)
T cd00200 64 TYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG------------------ 125 (289)
T ss_pred CEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc------------------
Confidence 45666677888888988762111 1112233444577888878999999955422
Q ss_pred eeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 006229 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (655)
Q Consensus 545 ~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVW 624 (655)
+.+..+..|...|.+++|+|++.+|++++.|+.|++||+++++.+..+..|...|++++|+|+++.|++++.|+.|++|
T Consensus 126 -~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~ 204 (289)
T cd00200 126 -KCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLW 204 (289)
T ss_pred -EEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEE
Confidence 4555666888999999999999999999989999999999999999999999999999999999999999999999999
Q ss_pred ECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 625 DTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 625 Dl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
|++++..+..+..+.. .+.++.|+|+
T Consensus 205 d~~~~~~~~~~~~~~~-----~i~~~~~~~~ 230 (289)
T cd00200 205 DLSTGKCLGTLRGHEN-----GVNSVAFSPD 230 (289)
T ss_pred ECCCCceecchhhcCC-----ceEEEEEcCC
Confidence 9999888887765544 3456667663
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.54 E-value=9e-14 Score=145.73 Aligned_cols=172 Identities=19% Similarity=0.261 Sum_probs=122.5
Q ss_pred eeccCCCCceEEEEecCCCC------------cccccCcccCCCCcEEEeccCCCcEEEEecCC-CCCCCCccc-----c
Q 006229 474 LQHNGASSKSLLMFGSDGMG------------SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPD-DADPRDRVG-----R 535 (655)
Q Consensus 474 ~~~s~S~d~s~l~ws~dg~~------------~lasss~~l~~~~~~LasGS~D~tV~vW~s~d-~~d~~d~~~-----~ 535 (655)
.+.+++.|.+++.|..+... ...+-+......+..+++||+|.++++|.... ..+...... .
T Consensus 161 ~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~ 240 (423)
T KOG0313|consen 161 LFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKK 240 (423)
T ss_pred eEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhh
Confidence 67778888999988766421 11222223345556788999999999997222 111111000 0
Q ss_pred ccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE--------------------------
Q 006229 536 SAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV-------------------------- 589 (655)
Q Consensus 536 l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~-------------------------- 589 (655)
-.......+..++..+.||+.+|.+|.|++ ...+++++.|.+||+||+.++.+
T Consensus 241 ~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gs 319 (423)
T KOG0313|consen 241 QKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGS 319 (423)
T ss_pred hhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecC
Confidence 011112334557788999999999999987 66888999999999998765422
Q ss_pred ------------------EEEecccCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCe-EEEEEecccceeeeec
Q 006229 590 ------------------KSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENVR-KLTFICCYKCIFVSTA 646 (655)
Q Consensus 590 ------------------l~tl~gH~~~ItsVafsPdg~-~LaSgS~DgtVrVWDl~tg~-~v~~l~~~~~~v~s~~ 646 (655)
..+|.||...|.+|.|+|... .|+|||.|+++++||+|+.+ .+..+..|...+.++.
T Consensus 320 sdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vd 396 (423)
T KOG0313|consen 320 SDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVD 396 (423)
T ss_pred CCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEe
Confidence 346667999999999999776 48999999999999999887 8899999988776543
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.53 E-value=8e-14 Score=148.85 Aligned_cols=139 Identities=21% Similarity=0.361 Sum_probs=105.7
Q ss_pred ceeccCCCCceEEEEecCCCCc---ccccCcccCCC-------------CcEEEeccCCCcEEEEecCCCCCCCCccccc
Q 006229 473 TLQHNGASSKSLLMFGSDGMGS---LTSAPNQLTDM-------------DRFVDDGSLDDNVESFLSPDDADPRDRVGRS 536 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~~---lasss~~l~~~-------------~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l 536 (655)
..+.+++.+..+..|+...... ...+...+.++ ..++++++.|+.+.+|+.+..
T Consensus 191 g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~---------- 260 (422)
T KOG0264|consen 191 GTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN---------- 260 (422)
T ss_pred eeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC----------
Confidence 4566777888888888776433 11111122222 244567777888888855431
Q ss_pred cccCCCceeeeEEeecCCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCC-eEEEEecccCCCEEEEEEcCCC-CEEE
Q 006229 537 AEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFSPSL-SRLA 613 (655)
Q Consensus 537 ~d~~~~~t~~~v~~l~gH~~~V~sl~fSp-dG~lLaSgs~DgtVrIWDl~t~-~~l~tl~gH~~~ItsVafsPdg-~~La 613 (655)
+-+......+|++.|.||+|+| ++.+|||||.|++|+|||++.. .++.++.+|.+.|.+|.|+|+. ..||
T Consensus 261 -------~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLA 333 (422)
T KOG0264|consen 261 -------TSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLA 333 (422)
T ss_pred -------CCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeE
Confidence 2244566789999999999999 7779999999999999999876 4788999999999999999965 5799
Q ss_pred EEeCCCcEEEEECCC
Q 006229 614 TSSADRTVRVWDTEN 628 (655)
Q Consensus 614 SgS~DgtVrVWDl~t 628 (655)
|++.|+++.|||+..
T Consensus 334 SSg~D~rl~vWDls~ 348 (422)
T KOG0264|consen 334 SSGTDRRLNVWDLSR 348 (422)
T ss_pred ecccCCcEEEEeccc
Confidence 999999999999973
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.8e-14 Score=144.51 Aligned_cols=173 Identities=17% Similarity=0.189 Sum_probs=134.4
Q ss_pred CCCCCCCceeccCCCCceEEEEecCC-----------------C-C--------cccccCcccCCCCcEEEeccCCCcEE
Q 006229 466 GDVISRPTLQHNGASSKSLLMFGSDG-----------------M-G--------SLTSAPNQLTDMDRFVDDGSLDDNVE 519 (655)
Q Consensus 466 g~~~s~~~~~~s~S~d~s~l~ws~dg-----------------~-~--------~lasss~~l~~~~~~LasGS~D~tV~ 519 (655)
+..++++.+..+++.|.++.+++.+. . - .--+....|.+.+..|++||.|++|+
T Consensus 118 aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvK 197 (430)
T KOG0640|consen 118 AAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVK 197 (430)
T ss_pred eeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEE
Confidence 34467778888888888888887762 0 0 01122335677778899999999999
Q ss_pred EEecCCCC----------------------------CCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEE
Q 006229 520 SFLSPDDA----------------------------DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLA 571 (655)
Q Consensus 520 vW~s~d~~----------------------------d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLa 571 (655)
+|+..... ...-.+.++.|+.+..++-.-..-..|++.|++|.+|+.|++.+
T Consensus 198 lFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYv 277 (430)
T KOG0640|consen 198 LFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYV 277 (430)
T ss_pred EEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEE
Confidence 99655432 11122336666665544443334457999999999999999999
Q ss_pred EEeCCCcEEEEeCCCCeEEEEec-ccCC-CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecc
Q 006229 572 TGGHDKKAVLWCTESFTVKSTLE-EHTQ-WITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCY 638 (655)
Q Consensus 572 Sgs~DgtVrIWDl~t~~~l~tl~-gH~~-~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~ 638 (655)
||+.||.|||||=-+.+|+.++. +|.+ .|++..|..+++||+|++.|.+|++|.+.+++++..+.+.
T Consensus 278 TaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGA 346 (430)
T KOG0640|consen 278 TASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGA 346 (430)
T ss_pred EeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecC
Confidence 99999999999999999999995 6754 6999999999999999999999999999999999988765
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.8e-13 Score=161.13 Aligned_cols=180 Identities=14% Similarity=0.052 Sum_probs=131.1
Q ss_pred ceeccCCCCceEEEEecCCCCcc--------cccCcccCC-CCcEEEeccCCCcEEEEecCCCC----------------
Q 006229 473 TLQHNGASSKSLLMFGSDGMGSL--------TSAPNQLTD-MDRFVDDGSLDDNVESFLSPDDA---------------- 527 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~~l--------asss~~l~~-~~~~LasGS~D~tV~vW~s~d~~---------------- 527 (655)
..+++++.++++.+|+......+ .+....+.+ .+.+|++|+.|++|++|+...+.
T Consensus 546 ~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~ 625 (793)
T PLN00181 546 SQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQF 625 (793)
T ss_pred CEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEE
Confidence 46777888999999987642211 122223443 45789999999999999876532
Q ss_pred ----------CCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC------CeEEE
Q 006229 528 ----------DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES------FTVKS 591 (655)
Q Consensus 528 ----------d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t------~~~l~ 591 (655)
...+..+++|++.... ..+..+.+|...|.++.|. ++.+|++++.|++|+|||++. ..++.
T Consensus 626 ~~~~g~~latgs~dg~I~iwD~~~~~--~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~ 702 (793)
T PLN00181 626 PSESGRSLAFGSADHKVYYYDLRNPK--LPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLH 702 (793)
T ss_pred eCCCCCEEEEEeCCCeEEEEECCCCC--ccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceE
Confidence 1123445666665431 1345667999999999997 788999999999999999974 36788
Q ss_pred EecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccc--------eeeeeceeeEEEecC
Q 006229 592 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKC--------IFVSTAIGSCFFAPT 655 (655)
Q Consensus 592 tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~--------~v~s~~Vss~~F~P~ 655 (655)
++.+|...|++++|+|++.+|++|+.|++|+||+......+..+..... ......|.+++|+|+
T Consensus 703 ~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~ 774 (793)
T PLN00181 703 SFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQ 774 (793)
T ss_pred EEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCC
Confidence 9999999999999999999999999999999999887655443322110 011234788999885
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-14 Score=156.38 Aligned_cols=131 Identities=24% Similarity=0.321 Sum_probs=97.8
Q ss_pred cEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEe--ecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 006229 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQL--IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (655)
Q Consensus 507 ~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~--l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl 584 (655)
..+.++|.|+++|+|+....+. ....+.. ..+..-.|+.|+|++||++||+|+.||.|-+||.
T Consensus 282 ~~FlT~s~DgtlRiWdv~~~k~---------------q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~ 346 (641)
T KOG0772|consen 282 EEFLTCSYDGTLRIWDVNNTKS---------------QLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDK 346 (641)
T ss_pred cceEEecCCCcEEEEecCCchh---------------heeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeec
Confidence 3466888999999997665521 1122221 1234456899999999999999999999999998
Q ss_pred CCCeE---EEEecccCC--CEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eEEEEEecccceeeeeceeeEEEecC
Q 006229 585 ESFTV---KSTLEEHTQ--WITDVRFSPSLSRLATSSADRTVRVWDTENV-RKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 585 ~t~~~---l~tl~gH~~--~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg-~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
..... ...-.+|.. .|+||.|++||++|+|-|.|.++||||++.. +++....+.-.. ..-.+|+|+|+
T Consensus 347 ~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~---~~~tdc~FSPd 420 (641)
T KOG0772|consen 347 GSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTP---FPGTDCCFSPD 420 (641)
T ss_pred CCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCcc---CCCCccccCCC
Confidence 65432 233358988 9999999999999999999999999999975 455555444333 34558999996
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.52 E-value=8e-14 Score=146.68 Aligned_cols=120 Identities=21% Similarity=0.290 Sum_probs=105.4
Q ss_pred cEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCC-CCEEEEEeCCCcEEEEeCC
Q 006229 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTE 585 (655)
Q Consensus 507 ~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpd-G~lLaSgs~DgtVrIWDl~ 585 (655)
..||+||.|.+|.+|..++..-..+ ....+..+.+|...|-.|.|+|. .+.|+|+|.|.+|.|||+.
T Consensus 95 ~vIASgSeD~~v~vW~IPe~~l~~~------------ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~ 162 (472)
T KOG0303|consen 95 CVIASGSEDTKVMVWQIPENGLTRD------------LTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVG 162 (472)
T ss_pred ceeecCCCCceEEEEECCCcccccC------------cccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEecc
Confidence 6799999999999998777632111 12567889999999999999994 5599999999999999999
Q ss_pred CCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEeccc
Q 006229 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYK 639 (655)
Q Consensus 586 t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~ 639 (655)
+++.+-++. |.+.|++++|+.||.+|+|.|.|+.|||||.++++.+..-.+|.
T Consensus 163 tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~he 215 (472)
T KOG0303|consen 163 TGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHE 215 (472)
T ss_pred CCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeeccccc
Confidence 999998988 99999999999999999999999999999999999988776654
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.7e-13 Score=160.13 Aligned_cols=154 Identities=19% Similarity=0.222 Sum_probs=114.7
Q ss_pred CCCceeccCCCCceEEEEecCCC---Cc-----c---c----ccCcccC-CCCcEEEeccCCCcEEEEecCCCCCCCCcc
Q 006229 470 SRPTLQHNGASSKSLLMFGSDGM---GS-----L---T----SAPNQLT-DMDRFVDDGSLDDNVESFLSPDDADPRDRV 533 (655)
Q Consensus 470 s~~~~~~s~S~d~s~l~ws~dg~---~~-----l---a----sss~~l~-~~~~~LasGS~D~tV~vW~s~d~~d~~d~~ 533 (655)
++...+++++.++.+.+|+.... +. . . +....+. ....+|++++.|++|++|+...+
T Consensus 493 ~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~------- 565 (793)
T PLN00181 493 RDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARS------- 565 (793)
T ss_pred CCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCC-------
Confidence 34456677778888888875321 00 0 0 0011111 22467888888888888854433
Q ss_pred ccccccCCCceeeeEEeecCCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEc-CCCCE
Q 006229 534 GRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS-PSLSR 611 (655)
Q Consensus 534 ~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSp-dG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafs-Pdg~~ 611 (655)
..+..+.+|.+.|++|+|+| ++.+|+||+.|++|+|||++++.++.++..| ..|++++|+ +++.+
T Consensus 566 ------------~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~ 632 (793)
T PLN00181 566 ------------QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRS 632 (793)
T ss_pred ------------eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCE
Confidence 46677889999999999997 8899999999999999999999999888755 689999995 57999
Q ss_pred EEEEeCCCcEEEEECCCCe-EEEEEecccceee
Q 006229 612 LATSSADRTVRVWDTENVR-KLTFICCYKCIFV 643 (655)
Q Consensus 612 LaSgS~DgtVrVWDl~tg~-~v~~l~~~~~~v~ 643 (655)
|++|+.|++|++||++++. .+..+.+|...+.
T Consensus 633 latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~ 665 (793)
T PLN00181 633 LAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVS 665 (793)
T ss_pred EEEEeCCCeEEEEECCCCCccceEecCCCCCEE
Confidence 9999999999999998765 4566666655443
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.8e-13 Score=136.05 Aligned_cols=158 Identities=15% Similarity=0.178 Sum_probs=122.0
Q ss_pred CCCceeccCCCCceEEEEecCCCCcc--------cccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCC
Q 006229 470 SRPTLQHNGASSKSLLMFGSDGMGSL--------TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGK 541 (655)
Q Consensus 470 s~~~~~~s~S~d~s~l~ws~dg~~~l--------asss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~ 541 (655)
-+++...+++.++++..|+|.....+ .+....+...+.-+++|+.|+.|.+|++.++
T Consensus 27 ~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TG--------------- 91 (307)
T KOG0316|consen 27 VDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTG--------------- 91 (307)
T ss_pred cCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccC---------------
Confidence 34577888899999999999752111 1111122222244567777888888866655
Q ss_pred CceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC--CeEEEEecccCCCEEEEEEcCCCCEEEEEeCCC
Q 006229 542 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES--FTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 619 (655)
Q Consensus 542 ~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t--~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~Dg 619 (655)
+.++.+++|.+.|+.|.|+.+...+++|+.|.+||+||.++ .+++..|..-.+.|.+|... +..|++||.||
T Consensus 92 ----kv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DG 165 (307)
T KOG0316|consen 92 ----KVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDG 165 (307)
T ss_pred ----eeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCC
Confidence 78899999999999999999999999999999999999975 57888999999999999886 67899999999
Q ss_pred cEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 620 TVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 620 tVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
++|.||+|.|.....+.++ .|+++.|+|+
T Consensus 166 tvRtydiR~G~l~sDy~g~-------pit~vs~s~d 194 (307)
T KOG0316|consen 166 TVRTYDIRKGTLSSDYFGH-------PITSVSFSKD 194 (307)
T ss_pred cEEEEEeecceeehhhcCC-------cceeEEecCC
Confidence 9999999998776544433 4556666654
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.4e-14 Score=158.65 Aligned_cols=168 Identities=20% Similarity=0.187 Sum_probs=131.4
Q ss_pred CceeccCCCCceEEEEecCCCC------cccccCcccCCCCcEEEeccCCCcEEEEecCCCC------------------
Q 006229 472 PTLQHNGASSKSLLMFGSDGMG------SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDA------------------ 527 (655)
Q Consensus 472 ~~~~~s~S~d~s~l~ws~dg~~------~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~------------------ 527 (655)
...+.+++.|++..+|+..... ....+...+.-....+.+||.|.+|++|....+.
T Consensus 261 ~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~ 340 (537)
T KOG0274|consen 261 GDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD 340 (537)
T ss_pred CCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec
Confidence 3567888889999999854311 1122223444444567788999999999877654
Q ss_pred ------CCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC-eEEEEecccCCCE
Q 006229 528 ------DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWI 600 (655)
Q Consensus 528 ------d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~-~~l~tl~gH~~~I 600 (655)
...+..+++|++. +++++..+.+|+..|.++.+... ..+++|+.|++|++||+++. +|+.++.+|...|
T Consensus 341 ~~~lvsgs~d~~v~VW~~~---~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v 416 (537)
T KOG0274|consen 341 EPLLVSGSYDGTVKVWDPR---TGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLV 416 (537)
T ss_pred CCEEEEEecCceEEEEEhh---hceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccc
Confidence 1223345777766 56899999999999999988755 89999999999999999999 9999999999999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEec-ccceeeee
Q 006229 601 TDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICC-YKCIFVST 645 (655)
Q Consensus 601 tsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~-~~~~v~s~ 645 (655)
.++.+. +.+|++++.|++|++||+.+++|++++.+ +...+...
T Consensus 417 ~~l~~~--~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l 460 (537)
T KOG0274|consen 417 SSLLLR--DNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSAL 460 (537)
T ss_pred cccccc--cceeEeccccccEEEeecccCceeeeeccCCcccEEEe
Confidence 887764 78999999999999999999999999988 33433333
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.4e-14 Score=155.21 Aligned_cols=161 Identities=19% Similarity=0.252 Sum_probs=136.4
Q ss_pred CCCCceeccCCCCceEEEEecCCCCc----------------cc----ccCcccCCCCcEEEeccCCCcEEEEecCCCCC
Q 006229 469 ISRPTLQHNGASSKSLLMFGSDGMGS----------------LT----SAPNQLTDMDRFVDDGSLDDNVESFLSPDDAD 528 (655)
Q Consensus 469 ~s~~~~~~s~S~d~s~l~ws~dg~~~----------------la----sss~~l~~~~~~LasGS~D~tV~vW~s~d~~d 528 (655)
.++.....+++.|+++..|+-.-... +- +....+.+.+++|+.+-.|.+|++|+..+
T Consensus 463 ~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDt--- 539 (888)
T KOG0306|consen 463 SPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDT--- 539 (888)
T ss_pred cCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecc---
Confidence 45667788888999999987532100 00 11124477788999999999999996533
Q ss_pred CCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCC
Q 006229 529 PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS 608 (655)
Q Consensus 529 ~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPd 608 (655)
++.+-.+.||.-+|.|++.|||+++|+|||.|+.|+||-++=|.|.+.|-+|.+.|.+|.|.|.
T Consensus 540 ----------------lKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~ 603 (888)
T KOG0306|consen 540 ----------------LKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPK 603 (888)
T ss_pred ----------------eeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEccc
Confidence 3567788999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeecee
Q 006229 609 LSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIG 648 (655)
Q Consensus 609 g~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vs 648 (655)
...++|||.|+.||-||-...+++..+.+|...+.|.++.
T Consensus 604 ~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~ 643 (888)
T KOG0306|consen 604 THLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVS 643 (888)
T ss_pred ceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEc
Confidence 9999999999999999999999999999999888877664
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.2e-14 Score=156.65 Aligned_cols=160 Identities=16% Similarity=0.243 Sum_probs=120.0
Q ss_pred ceeccCCCCceEEEEecCCCC--cc---------cccCcccC-CCCcEEEeccCCCcEEEEecCCCCCCCCccccccccC
Q 006229 473 TLQHNGASSKSLLMFGSDGMG--SL---------TSAPNQLT-DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVG 540 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~--~l---------asss~~l~-~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~ 540 (655)
.++++++..+.+.+|+..... .+ .+...+|. ....+|.+||-|++|++|+....
T Consensus 101 NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~-------------- 166 (839)
T KOG0269|consen 101 NLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSK-------------- 166 (839)
T ss_pred hhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecc--------------
Confidence 567777778888888886621 11 11111222 22267899999999999976554
Q ss_pred CCceeeeEEeecCCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCCC-CeEEEEecccCCCEEEEEEcCCCCEEEEEeCC
Q 006229 541 KGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSAD 618 (655)
Q Consensus 541 ~~~t~~~v~~l~gH~~~V~sl~fSp-dG~lLaSgs~DgtVrIWDl~t-~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~D 618 (655)
+.+.++.+....|.+|.|+| ++..|+++.+.|.|.+||++- .++...|.+|.+.|.||.|+|++.+|||||.|
T Consensus 167 -----~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRD 241 (839)
T KOG0269|consen 167 -----KSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRD 241 (839)
T ss_pred -----cccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCC
Confidence 23344556678899999999 788999999999999999985 45777889999999999999999999999999
Q ss_pred CcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 619 RTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 619 gtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
+.|||||+.+.+....++.+ ....|..+.|-|.
T Consensus 242 K~vkiWd~t~~~~~~~~tIn----Tiapv~rVkWRP~ 274 (839)
T KOG0269|consen 242 KMVKIWDMTDSRAKPKHTIN----TIAPVGRVKWRPA 274 (839)
T ss_pred ccEEEEeccCCCccceeEEe----ecceeeeeeeccC
Confidence 99999999865443322222 2345678888874
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.1e-13 Score=136.49 Aligned_cols=125 Identities=19% Similarity=0.221 Sum_probs=104.6
Q ss_pred cEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 006229 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (655)
Q Consensus 507 ~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t 586 (655)
++|.+++.|.++.+|.+.++ +.+.++.||++.|.||+.+.+.+.|+||+.|.+++|||+++
T Consensus 23 DLlFscaKD~~~~vw~s~nG-------------------erlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t 83 (327)
T KOG0643|consen 23 DLLFSCAKDSTPTVWYSLNG-------------------ERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET 83 (327)
T ss_pred cEEEEecCCCCceEEEecCC-------------------ceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCC
Confidence 48999999999999988777 57889999999999999999999999999999999999998
Q ss_pred CeEEEEecc-----------------------------------------------------cCCCEEEEEEcCCCCEEE
Q 006229 587 FTVKSTLEE-----------------------------------------------------HTQWITDVRFSPSLSRLA 613 (655)
Q Consensus 587 ~~~l~tl~g-----------------------------------------------------H~~~ItsVafsPdg~~La 613 (655)
|+++.+++- +.+.|+.+-|.|.+.+|+
T Consensus 84 Gk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii 163 (327)
T KOG0643|consen 84 GKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETII 163 (327)
T ss_pred CcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEE
Confidence 876654431 456788899999999999
Q ss_pred EEeCCCcEEEEECCCCeEE-EEEecccceeeeeceeeEEEecC
Q 006229 614 TSSADRTVRVWDTENVRKL-TFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 614 SgS~DgtVrVWDl~tg~~v-~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
+|..||.|.+||+++|..+ .....|.. .|+++.|+|+
T Consensus 164 ~Ghe~G~is~~da~~g~~~v~s~~~h~~-----~Ind~q~s~d 201 (327)
T KOG0643|consen 164 AGHEDGSISIYDARTGKELVDSDEEHSS-----KINDLQFSRD 201 (327)
T ss_pred EecCCCcEEEEEcccCceeeechhhhcc-----ccccccccCC
Confidence 9999999999999998544 33344433 5667777664
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.2e-14 Score=160.85 Aligned_cols=142 Identities=21% Similarity=0.338 Sum_probs=113.6
Q ss_pred ccCCCCcEEEecc--CCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCc
Q 006229 501 QLTDMDRFVDDGS--LDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKK 578 (655)
Q Consensus 501 ~l~~~~~~LasGS--~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~Dgt 578 (655)
++.+....+++|+ .|+.+++|....-. .....++.. -.+.+.....|.+.|+|+.|++||++||+||+|+.
T Consensus 20 dv~pdg~~~aTgGq~~d~~~~iW~~~~vl----~~~~~~~~~---l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~ 92 (942)
T KOG0973|consen 20 DVHPDGVKFATGGQVLDGGIVIWSQDPVL----DEKEEKNEN---LPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRL 92 (942)
T ss_pred EecCCceeEecCCccccccceeecccccc----chhhhhhcc---cchhheeeccccCceeEEEECCCCCeEeeccCcce
Confidence 3445556789999 89999999321110 001111111 23466777899999999999999999999999999
Q ss_pred EEEEeCCC------------------CeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccc
Q 006229 579 AVLWCTES------------------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKC 640 (655)
Q Consensus 579 VrIWDl~t------------------~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~ 640 (655)
|-||+... .+++.++.+|+..|.+|+|+|++.+|+|+|.|++|.|||.++++++..+.+|..
T Consensus 93 v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s 172 (942)
T KOG0973|consen 93 VMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQS 172 (942)
T ss_pred EEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccc
Confidence 99998762 357889999999999999999999999999999999999999999999999987
Q ss_pred eeeeeceeeEEEec
Q 006229 641 IFVSTAIGSCFFAP 654 (655)
Q Consensus 641 ~v~s~~Vss~~F~P 654 (655)
.+. .+.|.|
T Consensus 173 ~VK-----Gvs~DP 181 (942)
T KOG0973|consen 173 LVK-----GVSWDP 181 (942)
T ss_pred ccc-----ceEECC
Confidence 655 667776
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.9e-14 Score=160.12 Aligned_cols=134 Identities=19% Similarity=0.315 Sum_probs=118.8
Q ss_pred ccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCC
Q 006229 497 SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD 576 (655)
Q Consensus 497 sss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~D 576 (655)
+-+..|+..+.+|+.|+.|++|++|+.... +.++++.+|...+.+|+|+|-+.++++|+.|
T Consensus 73 IeSl~f~~~E~LlaagsasgtiK~wDleeA-------------------k~vrtLtgh~~~~~sv~f~P~~~~~a~gStd 133 (825)
T KOG0267|consen 73 IESLTFDTSERLLAAGSASGTIKVWDLEEA-------------------KIVRTLTGHLLNITSVDFHPYGEFFASGSTD 133 (825)
T ss_pred ceeeecCcchhhhcccccCCceeeeehhhh-------------------hhhhhhhccccCcceeeeccceEEecccccc
Confidence 344466777788999999999999965433 5778999999999999999999999999999
Q ss_pred CcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEec
Q 006229 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAP 654 (655)
Q Consensus 577 gtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P 654 (655)
+-+++||++..-|.+++.+|...|.+++|+|+|++++++++|.+|+|||+..|+.+..|..|...+.. +.|||
T Consensus 134 td~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~s-----le~hp 206 (825)
T KOG0267|consen 134 TDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQS-----LEFHP 206 (825)
T ss_pred ccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccc-----cccCc
Confidence 99999999988899999999999999999999999999999999999999999999999988776653 34665
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.3e-14 Score=158.30 Aligned_cols=159 Identities=23% Similarity=0.353 Sum_probs=130.4
Q ss_pred ceeccCCCCceEEEEecCCC--------CcccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCce
Q 006229 473 TLQHNGASSKSLLMFGSDGM--------GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFT 544 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~--------~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t 544 (655)
.++..++.++++.+|+.+.. +.+......|.+...|.+.||.|..+++|+..--
T Consensus 83 ~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~------------------ 144 (825)
T KOG0267|consen 83 RLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKK------------------ 144 (825)
T ss_pred hhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhcc------------------
Confidence 46667778889999998752 1233444567888889999999999999944321
Q ss_pred eeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 006229 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (655)
Q Consensus 545 ~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVW 624 (655)
.|+..+.+|...|.++.|+|+|+|+++|++|.+|+|||...|+.+..|.+|++.|.++.|+|..-++++||.|++|++|
T Consensus 145 -Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~ 223 (825)
T KOG0267|consen 145 -GCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFW 223 (825)
T ss_pred -CceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeee
Confidence 3778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 625 DTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 625 Dl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
|+++.+.+...... ...|-+..|+|+
T Consensus 224 dletfe~I~s~~~~-----~~~v~~~~fn~~ 249 (825)
T KOG0267|consen 224 DLETFEVISSGKPE-----TDGVRSLAFNPD 249 (825)
T ss_pred ccceeEEeeccCCc-----cCCceeeeecCC
Confidence 99987766544332 233455666654
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.4e-13 Score=143.50 Aligned_cols=157 Identities=20% Similarity=0.345 Sum_probs=127.3
Q ss_pred cccccCcccCCCCcEEEeccCCCcEEEEecCCCC------------------------------CCCCccccccccCCCc
Q 006229 494 SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDA------------------------------DPRDRVGRSAEVGKGF 543 (655)
Q Consensus 494 ~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~------------------------------d~~d~~~~l~d~~~~~ 543 (655)
...++..++.+.+.++++|-.-++||+|+..... +++.++++.+--.++
T Consensus 59 ~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG- 137 (603)
T KOG0318|consen 59 AHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSG- 137 (603)
T ss_pred cceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCC-
Confidence 4455566778888899999999999999766532 222232222222222
Q ss_pred eeeeEEeecCCCCCeeEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 006229 544 TFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622 (655)
Q Consensus 544 t~~~v~~l~gH~~~V~sl~fSpdG~-lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVr 622 (655)
..+..+.||...|++|+|-|.-. .++||++|.+|-+|+=...+...++..|+..|+||+|+|||.+++|++.||+|.
T Consensus 138 --~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~ 215 (603)
T KOG0318|consen 138 --NSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIY 215 (603)
T ss_pred --CccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEE
Confidence 34677889999999999999544 899999999999999988999999999999999999999999999999999999
Q ss_pred EEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 623 VWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 623 VWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
|||=.+|+.+..|.. ...+...|..+.|+||
T Consensus 216 iyDGktge~vg~l~~--~~aHkGsIfalsWsPD 246 (603)
T KOG0318|consen 216 IYDGKTGEKVGELED--SDAHKGSIFALSWSPD 246 (603)
T ss_pred EEcCCCccEEEEecC--CCCccccEEEEEECCC
Confidence 999999999999974 3445666789999997
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.5e-13 Score=144.07 Aligned_cols=139 Identities=19% Similarity=0.236 Sum_probs=106.5
Q ss_pred CCceEEEEecCCCCcccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCee
Q 006229 480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE 559 (655)
Q Consensus 480 ~d~s~l~ws~dg~~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~ 559 (655)
..++.+.|+|...+ .+.+|-.-+.|++|-..++. |.+ .-+.+.+|+..|.
T Consensus 212 ~EGy~LdWSp~~~g--------------~LlsGDc~~~I~lw~~~~g~---------W~v-------d~~Pf~gH~~SVE 261 (440)
T KOG0302|consen 212 GEGYGLDWSPIKTG--------------RLLSGDCVKGIHLWEPSTGS---------WKV-------DQRPFTGHTKSVE 261 (440)
T ss_pred ccceeeeccccccc--------------ccccCccccceEeeeeccCc---------eee-------cCccccccccchh
Confidence 45667777774442 34566566778888554431 222 2244568999999
Q ss_pred EEEEcCC-CCEEEEEeCCCcEEEEeCCCC---eEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC---CeEE
Q 006229 560 SCHFSPD-GKLLATGGHDKKAVLWCTESF---TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN---VRKL 632 (655)
Q Consensus 560 sl~fSpd-G~lLaSgs~DgtVrIWDl~t~---~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~t---g~~v 632 (655)
.++|||. ...|+|||.|++|||||++.+ .++.+ ++|...|+.|.|+..-.+||||+.||+++|||+|. +..+
T Consensus 262 DLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pV 340 (440)
T KOG0302|consen 262 DLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPV 340 (440)
T ss_pred hhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcc
Confidence 9999994 459999999999999999988 45544 89999999999999888999999999999999985 4556
Q ss_pred EEEecccceeeeeceeeEEEec
Q 006229 633 TFICCYKCIFVSTAIGSCFFAP 654 (655)
Q Consensus 633 ~~l~~~~~~v~s~~Vss~~F~P 654 (655)
..|..|. ..|+++.|||
T Consensus 341 A~fk~Hk-----~pItsieW~p 357 (440)
T KOG0302|consen 341 ATFKYHK-----APITSIEWHP 357 (440)
T ss_pred eeEEecc-----CCeeEEEecc
Confidence 6777665 4567899998
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.3e-13 Score=142.70 Aligned_cols=121 Identities=18% Similarity=0.209 Sum_probs=104.2
Q ss_pred CcEEEeccCCCcEEEEecCCCC-------------------------CCCCccccccccCCCceeeeEEeecCCCCCeeE
Q 006229 506 DRFVDDGSLDDNVESFLSPDDA-------------------------DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 560 (655)
Q Consensus 506 ~~~LasGS~D~tV~vW~s~d~~-------------------------d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~s 560 (655)
...+.++|+|.+|+.|+...+. ...++.+++||...+..-.....+.+|++-|.+
T Consensus 271 ~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVss 350 (423)
T KOG0313|consen 271 ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSS 350 (423)
T ss_pred CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhh
Confidence 4567788889999999776654 334666788888887666778899999999999
Q ss_pred EEEcC-CCCEEEEEeCCCcEEEEeCCCCe-EEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 006229 561 CHFSP-DGKLLATGGHDKKAVLWCTESFT-VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (655)
Q Consensus 561 l~fSp-dG~lLaSgs~DgtVrIWDl~t~~-~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~ 627 (655)
|.|+| +...|++|++|+++++||+++.+ .+..+.+|.+.|.++.|. ++.+|+|||.|.+|+|+.-.
T Consensus 351 vkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 351 VKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred eecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 99999 55689999999999999999988 899999999999999998 47899999999999998654
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.7e-13 Score=142.35 Aligned_cols=180 Identities=21% Similarity=0.214 Sum_probs=131.7
Q ss_pred CCCCCceeccCCCCceEEEEecCCCCc---c-----cccCccc-CCCCcEEEeccCCCcEEEEecCCCC-----------
Q 006229 468 VISRPTLQHNGASSKSLLMFGSDGMGS---L-----TSAPNQL-TDMDRFVDDGSLDDNVESFLSPDDA----------- 527 (655)
Q Consensus 468 ~~s~~~~~~s~S~d~s~l~ws~dg~~~---l-----asss~~l-~~~~~~LasGS~D~tV~vW~s~d~~----------- 527 (655)
..++.......+.++.+.+|+.+.... + .++...+ ..+.+ +++|+.|.+|+.|+.....
T Consensus 227 ~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~-vVsgs~DRtiK~WDl~k~~C~kt~l~~S~c 305 (459)
T KOG0288|consen 227 FDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSR-VVSGSADRTIKLWDLQKAYCSKTVLPGSQC 305 (459)
T ss_pred ecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccc-eeeccccchhhhhhhhhhheeccccccccc
Confidence 344456677778889999998876211 1 1111122 22223 8899999999999655432
Q ss_pred ------------CCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecc
Q 006229 528 ------------DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE 595 (655)
Q Consensus 528 ------------d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~g 595 (655)
+-.+..+++||+..+ .++.....+. .|++|..+++|..|.+++.|.++++.|+++...+.++.+
T Consensus 306 nDI~~~~~~~~SgH~DkkvRfwD~Rs~---~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA 381 (459)
T KOG0288|consen 306 NDIVCSISDVISGHFDKKVRFWDIRSA---DKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSA 381 (459)
T ss_pred cceEecceeeeecccccceEEEeccCC---ceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeec
Confidence 111233466666554 3444555554 899999999999999999999999999999988888763
Q ss_pred ----cCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 596 ----HTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 596 ----H~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
....++.+.|||++.|+++||.||.|+||++.++++...+...++.. .|.+|.|+|.
T Consensus 382 ~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~---aI~s~~W~~s 442 (459)
T KOG0288|consen 382 EGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNA---AITSLSWNPS 442 (459)
T ss_pred cccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCc---ceEEEEEcCC
Confidence 23348999999999999999999999999999999998887655432 6889999984
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.9e-13 Score=137.90 Aligned_cols=141 Identities=22% Similarity=0.287 Sum_probs=104.0
Q ss_pred CCceEEEEecCCCCcccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCC-ceeeeEEeecCCCCCe
Q 006229 480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKG-FTFTEFQLIPASTSKV 558 (655)
Q Consensus 480 ~d~s~l~ws~dg~~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~-~t~~~v~~l~gH~~~V 558 (655)
.+..+-.|++||. ++++||.|.+|+++++...- .+. ..+....... ..-..++++..|.+.|
T Consensus 113 ~~cR~aafs~DG~---------------lvATGsaD~SIKildverml-aks-~~~em~~~~~qa~hPvIRTlYDH~dev 175 (430)
T KOG0640|consen 113 SPCRAAAFSPDGS---------------LVATGSADASIKILDVERML-AKS-KPKEMISGDTQARHPVIRTLYDHVDEV 175 (430)
T ss_pred cceeeeeeCCCCc---------------EEEccCCcceEEEeehhhhh-hhc-chhhhccCCcccCCceEeehhhccCcc
Confidence 3455556666655 99999999999999665221 000 0111111111 1124789999999999
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEeCCC------------------------C--------------------eEEEEe-
Q 006229 559 ESCHFSPDGKLLATGGHDKKAVLWCTES------------------------F--------------------TVKSTL- 593 (655)
Q Consensus 559 ~sl~fSpdG~lLaSgs~DgtVrIWDl~t------------------------~--------------------~~l~tl- 593 (655)
+++.|+|...+|++|+.|++|++||+.. | .|....
T Consensus 176 n~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsan 255 (430)
T KOG0640|consen 176 NDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN 255 (430)
T ss_pred cceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecC
Confidence 9999999999999999999999998642 1 111111
Q ss_pred --cccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEec
Q 006229 594 --EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICC 637 (655)
Q Consensus 594 --~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~ 637 (655)
..|++.|++|.+++.+++.+|||.||.|||||=-+++|+.+|..
T Consensus 256 Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~ 301 (430)
T KOG0640|consen 256 PDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGN 301 (430)
T ss_pred cccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHh
Confidence 25899999999999999999999999999999999999988853
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.5e-12 Score=128.81 Aligned_cols=104 Identities=23% Similarity=0.352 Sum_probs=88.6
Q ss_pred eeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecc--c-----CCCEEEEEEcCCCCEEEEEeCC
Q 006229 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE--H-----TQWITDVRFSPSLSRLATSSAD 618 (655)
Q Consensus 546 ~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~g--H-----~~~ItsVafsPdg~~LaSgS~D 618 (655)
..+..+.+|++.|.++ ++-+|-.|++|+.|++||+||++...++.++.. | +..|.+|+..|.|++|+||-.|
T Consensus 174 ~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~d 252 (350)
T KOG0641|consen 174 QGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHAD 252 (350)
T ss_pred CcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCC
Confidence 4566788999999877 344688999999999999999999889888742 2 3579999999999999999999
Q ss_pred CcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 619 RTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 619 gtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
..+.+||++.++.+..|..|... |.++.|+|.
T Consensus 253 ssc~lydirg~r~iq~f~phsad-----ir~vrfsp~ 284 (350)
T KOG0641|consen 253 SSCMLYDIRGGRMIQRFHPHSAD-----IRCVRFSPG 284 (350)
T ss_pred CceEEEEeeCCceeeeeCCCccc-----eeEEEeCCC
Confidence 99999999999999999888654 557788873
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.7e-13 Score=153.05 Aligned_cols=183 Identities=20% Similarity=0.173 Sum_probs=132.8
Q ss_pred cCCcccccCCCccccCCCccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeccCCCC
Q 006229 402 AGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPSTHTPGDVISRPTLQHNGASS 481 (655)
Q Consensus 402 ~~g~~~~~gs~~~s~~~~~~~~~~q~grkRk~p~sSs~panSsgt~~t~~pSpss~stpst~tpg~~~s~~~~~~s~S~d 481 (655)
--|+|++.|+..+.++ .++-|+|.+|+....+ |+. ..+.+ .-..........+++.+
T Consensus 458 ~CGNF~~IG~S~G~Id----~fNmQSGi~r~sf~~~--~ah---------------~~~V~--gla~D~~n~~~vsa~~~ 514 (910)
T KOG1539|consen 458 FCGNFVFIGYSKGTID----RFNMQSGIHRKSFGDS--PAH---------------KGEVT--GLAVDGTNRLLVSAGAD 514 (910)
T ss_pred ccCceEEEeccCCeEE----EEEcccCeeecccccC--ccc---------------cCcee--EEEecCCCceEEEccCc
Confidence 4589999999999888 8899999999877311 000 00000 00011122456666677
Q ss_pred ceEEEEecCCCCc-----ccccC--cccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCC
Q 006229 482 KSLLMFGSDGMGS-----LTSAP--NQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS 554 (655)
Q Consensus 482 ~s~l~ws~dg~~~-----lasss--~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH 554 (655)
+.+..|+-.+... +.+.. ..+......++.+..|-.|++++. .+.+.++.+.||
T Consensus 515 Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~-------------------~t~kvvR~f~gh 575 (910)
T KOG1539|consen 515 GILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDV-------------------VTRKVVREFWGH 575 (910)
T ss_pred ceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEc-------------------hhhhhhHHhhcc
Confidence 7777787766421 11111 122344455667777777777743 234678999999
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCC-cEEEEECC
Q 006229 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR-TVRVWDTE 627 (655)
Q Consensus 555 ~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~Dg-tVrVWDl~ 627 (655)
++.|++++|||||+||++++.|++||+||+.++.++..+. -+..+++|.|+|+|.+|||+..|. -|.+|.=.
T Consensus 576 ~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 576 GNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred ccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEEch
Confidence 9999999999999999999999999999999999998775 678899999999999999999994 59999654
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=9.7e-13 Score=146.31 Aligned_cols=159 Identities=18% Similarity=0.225 Sum_probs=119.9
Q ss_pred ceeccCCCCceEEEEecCCCCcc------cccCcccC-CCCcEEEeccCCCcEEEEecCCCC------------------
Q 006229 473 TLQHNGASSKSLLMFGSDGMGSL------TSAPNQLT-DMDRFVDDGSLDDNVESFLSPDDA------------------ 527 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~~l------asss~~l~-~~~~~LasGS~D~tV~vW~s~d~~------------------ 527 (655)
-.+..++.|....+|.+++...+ -...+.+. ..+..+.+||+|.|+++|...+-.
T Consensus 72 ~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~l~~~l~gH~asVWAv~~l~e 151 (745)
T KOG0301|consen 72 GRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGELVYSLQGHTASVWAVASLPE 151 (745)
T ss_pred cceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecchhhhcccCCcchheeeeeecCC
Confidence 34666778888888888773221 11122222 222337888899999888322211
Q ss_pred -----CCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEE
Q 006229 528 -----DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITD 602 (655)
Q Consensus 528 -----d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~Its 602 (655)
...|..+++|.-. +.++++.+|++-|+.+++-+++ .|+||+.||.||+||+ +++++..+.||+..|++
T Consensus 152 ~~~vTgsaDKtIklWk~~-----~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYs 224 (745)
T KOG0301|consen 152 NTYVTGSADKTIKLWKGG-----TLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYS 224 (745)
T ss_pred CcEEeccCcceeeeccCC-----chhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEE
Confidence 3345555666442 4678899999999999999765 5789999999999999 78999999999999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccc
Q 006229 603 VRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKC 640 (655)
Q Consensus 603 VafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~ 640 (655)
+...+++..++|+++|+++|||+.. +|+..+.....
T Consensus 225 is~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtt 260 (745)
T KOG0301|consen 225 ISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTT 260 (745)
T ss_pred EEecCCCCeEEEecCCceEEEeecC--ceEEEEecCcc
Confidence 9988999999999999999999987 77777766553
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.44 E-value=6e-13 Score=147.08 Aligned_cols=150 Identities=22% Similarity=0.324 Sum_probs=114.3
Q ss_pred cCcccCCCCcEEEeccCCCcEEEEecCCCCCC-------------------------CCccccccccCCCceeeeEEeec
Q 006229 498 APNQLTDMDRFVDDGSLDDNVESFLSPDDADP-------------------------RDRVGRSAEVGKGFTFTEFQLIP 552 (655)
Q Consensus 498 ss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~-------------------------~d~~~~l~d~~~~~t~~~v~~l~ 552 (655)
++..+...+.+|+.|..+++|.+|+....... +++.+..+|+..... .+.++.
T Consensus 221 tSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~--~~~~~~ 298 (484)
T KOG0305|consen 221 TSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQH--VVSTLQ 298 (484)
T ss_pred EEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchh--hhhhhh
Confidence 34455666789999999999999975544311 111111222221111 122477
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcC-CCCEEEEEe--CCCcEEEEECCCC
Q 006229 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSS--ADRTVRVWDTENV 629 (655)
Q Consensus 553 gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsP-dg~~LaSgS--~DgtVrVWDl~tg 629 (655)
+|...|..+.|++|+++||+|+.|..|.|||......+.++.+|+..|.+++||| ....||||+ .|++|++||+.++
T Consensus 299 ~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g 378 (484)
T KOG0305|consen 299 GHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG 378 (484)
T ss_pred cccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC
Confidence 8999999999999999999999999999999988899999999999999999999 567899877 5999999999999
Q ss_pred eEEEEEecccceeeeeceeeEEEecC
Q 006229 630 RKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 630 ~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
.++..+.++ .-|+++.|+|.
T Consensus 379 ~~i~~vdtg------sQVcsL~Wsk~ 398 (484)
T KOG0305|consen 379 ARIDSVDTG------SQVCSLIWSKK 398 (484)
T ss_pred cEecccccC------CceeeEEEcCC
Confidence 999766544 34678888763
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.5e-12 Score=140.21 Aligned_cols=160 Identities=22% Similarity=0.241 Sum_probs=117.4
Q ss_pred CCCCCceeccCCCCceEEEEecCCCC--------cccccCcccCCCC-cEEEeccCCCcEEEEecCCCCCCCCccccccc
Q 006229 468 VISRPTLQHNGASSKSLLMFGSDGMG--------SLTSAPNQLTDMD-RFVDDGSLDDNVESFLSPDDADPRDRVGRSAE 538 (655)
Q Consensus 468 ~~s~~~~~~s~S~d~s~l~ws~dg~~--------~lasss~~l~~~~-~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d 538 (655)
.-+++.+++.+...+.+.+|+..... ...+....|.+.+ ..+++|++|+.+++|+....
T Consensus 76 fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a------------ 143 (487)
T KOG0310|consen 76 FRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA------------ 143 (487)
T ss_pred eecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc------------
Confidence 34566777777777888888843311 1111122333333 45778888888888855443
Q ss_pred cCCCceeeeEEeecCCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCC-eEEEEecccCCCEEEEEEcCCCCEEEEEe
Q 006229 539 VGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFSPSLSRLATSS 616 (655)
Q Consensus 539 ~~~~~t~~~v~~l~gH~~~V~sl~fSp-dG~lLaSgs~DgtVrIWDl~t~-~~l~tl~gH~~~ItsVafsPdg~~LaSgS 616 (655)
.+...+.+|++.|.|.+|+| .+++++|||+||+||+||+++. ..+.++. |..+|-+|.|-|.|..|||++
T Consensus 144 -------~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAg 215 (487)
T KOG0310|consen 144 -------YVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAG 215 (487)
T ss_pred -------EEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcC
Confidence 24567899999999999999 6779999999999999999977 6666765 999999999999999999998
Q ss_pred CCCcEEEEECCCCeE-EEEEecccceeeeecee
Q 006229 617 ADRTVRVWDTENVRK-LTFICCYKCIFVSTAIG 648 (655)
Q Consensus 617 ~DgtVrVWDl~tg~~-v~~l~~~~~~v~s~~Vs 648 (655)
.. .|||||+.+|.. +..+..|...+.|..+.
T Consensus 216 Gn-~vkVWDl~~G~qll~~~~~H~KtVTcL~l~ 247 (487)
T KOG0310|consen 216 GN-SVKVWDLTTGGQLLTSMFNHNKTVTCLRLA 247 (487)
T ss_pred CC-eEEEEEecCCceehhhhhcccceEEEEEee
Confidence 65 899999985544 44444466666665543
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.3e-14 Score=149.23 Aligned_cols=104 Identities=25% Similarity=0.362 Sum_probs=95.6
Q ss_pred eeEEeecCCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCCC-CeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 006229 546 TEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623 (655)
Q Consensus 546 ~~v~~l~gH~~~V~sl~fSp-dG~lLaSgs~DgtVrIWDl~t-~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrV 623 (655)
+.+..+.+|+..|+++.|.| .+++|++++.|+.|+||++.. ++|+++|.||...|.+++|+.+|..++|+|.|++||+
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence 46788999999999999999 999999999999999999976 8999999999999999999999999999999999999
Q ss_pred EECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 624 WDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 624 WDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
||+++|.|+..|..... +.++.||||
T Consensus 285 wDtETG~~~~~f~~~~~------~~cvkf~pd 310 (503)
T KOG0282|consen 285 WDTETGQVLSRFHLDKV------PTCVKFHPD 310 (503)
T ss_pred eccccceEEEEEecCCC------ceeeecCCC
Confidence 99999999988876544 446888886
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.3e-13 Score=135.60 Aligned_cols=112 Identities=19% Similarity=0.377 Sum_probs=99.8
Q ss_pred CCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCC--EEEEEeCCCcEEEE
Q 006229 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK--LLATGGHDKKAVLW 582 (655)
Q Consensus 505 ~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~--lLaSgs~DgtVrIW 582 (655)
..+|+++||.|.+|++|+...- ..+..+-.|.+.|++|.|.++-. .|++|+.||.|.+|
T Consensus 52 s~~~~aSGssDetI~IYDm~k~-------------------~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw 112 (362)
T KOG0294|consen 52 SGPYVASGSSDETIHIYDMRKR-------------------KQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIW 112 (362)
T ss_pred cceeEeccCCCCcEEEEeccch-------------------hhhcceeccccceEEEEecCCcchhheeeecCCCcEEEE
Confidence 3489999999999999965443 46677788999999999999765 99999999999999
Q ss_pred eCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEE
Q 006229 583 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFI 635 (655)
Q Consensus 583 Dl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l 635 (655)
++....++.++++|+..|+.|+.+|.+++.+|.+.|+++|+||+-+|+.-..+
T Consensus 113 ~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~ 165 (362)
T KOG0294|consen 113 RVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVL 165 (362)
T ss_pred EcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceee
Confidence 99999999999999999999999999999999999999999999887654433
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.8e-12 Score=132.32 Aligned_cols=128 Identities=23% Similarity=0.247 Sum_probs=99.5
Q ss_pred cEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcC---CCCEEEEEeCCCcEEEEe
Q 006229 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP---DGKLLATGGHDKKAVLWC 583 (655)
Q Consensus 507 ~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSp---dG~lLaSgs~DgtVrIWD 583 (655)
-.+.++|+|.++++|+.... .+.-.| ...+.|.+-++|| ..-++|+|..|-.|++.|
T Consensus 115 GmFtssSFDhtlKVWDtnTl-------------------Q~a~~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCD 174 (397)
T KOG4283|consen 115 GMFTSSSFDHTLKVWDTNTL-------------------QEAVDF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCD 174 (397)
T ss_pred ceeecccccceEEEeecccc-------------------eeeEEe-ecCceeehhhcChhhhcceEEEEecCCCcEEEEe
Confidence 46778999999999965543 222111 2346788888888 234888888999999999
Q ss_pred CCCCeEEEEecccCCCEEEEEEcCCCCE-EEEEeCCCcEEEEECCCC-eEEEEEeccc---------ceeeeeceeeEEE
Q 006229 584 TESFTVKSTLEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENV-RKLTFICCYK---------CIFVSTAIGSCFF 652 (655)
Q Consensus 584 l~t~~~l~tl~gH~~~ItsVafsPdg~~-LaSgS~DgtVrVWDl~tg-~~v~~l~~~~---------~~v~s~~Vss~~F 652 (655)
+.+|.+.++|.||.+.|.+|.|+|...+ |+|||.||+||+||++.. .|+..+.-|. ...+...|..++|
T Consensus 175 i~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~ 254 (397)
T KOG4283|consen 175 IASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAW 254 (397)
T ss_pred ccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeee
Confidence 9999999999999999999999998876 889999999999999865 6777777665 2334444666666
Q ss_pred ec
Q 006229 653 AP 654 (655)
Q Consensus 653 ~P 654 (655)
..
T Consensus 255 tS 256 (397)
T KOG4283|consen 255 TS 256 (397)
T ss_pred cc
Confidence 53
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.4e-13 Score=142.57 Aligned_cols=120 Identities=24% Similarity=0.370 Sum_probs=100.8
Q ss_pred ccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcC-CCCEEEEEeCCCcE
Q 006229 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKA 579 (655)
Q Consensus 501 ~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSp-dG~lLaSgs~DgtV 579 (655)
.|...++++++|...|.|++|+.. +...++.+.+|+.+|..+.|+| |+..|++|+.|+.+
T Consensus 75 ~fR~DG~LlaaGD~sG~V~vfD~k-------------------~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~ 135 (487)
T KOG0310|consen 75 DFRSDGRLLAAGDESGHVKVFDMK-------------------SRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVV 135 (487)
T ss_pred EeecCCeEEEccCCcCcEEEeccc-------------------cHHHHHHHhhccCceeEEEecccCCeEEEecCCCceE
Confidence 455566899999999999999411 1234677889999999999999 56689999999999
Q ss_pred EEEeCCCCeEEEEecccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCC-eEEEEEeccc
Q 006229 580 VLWCTESFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENV-RKLTFICCYK 639 (655)
Q Consensus 580 rIWDl~t~~~l~tl~gH~~~ItsVafsPdg-~~LaSgS~DgtVrVWDl~tg-~~v~~l~~~~ 639 (655)
++||+.+......+.+|++.|.|.+|+|-. ..++|||.||+||+||++.. ..+.++.++.
T Consensus 136 k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~ 197 (487)
T KOG0310|consen 136 KYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGC 197 (487)
T ss_pred EEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCC
Confidence 999999998877999999999999999964 47999999999999999976 6667776554
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-12 Score=137.37 Aligned_cols=104 Identities=22% Similarity=0.320 Sum_probs=88.9
Q ss_pred cEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 006229 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (655)
Q Consensus 507 ~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t 586 (655)
..+++||.|++|++|+.+.+. ...++.+ ++|.+.|+-|.|+.+-.+||+|+.||+++|||++.
T Consensus 271 ~vfaScS~DgsIrIWDiRs~~----------------~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~ 333 (440)
T KOG0302|consen 271 GVFASCSCDGSIRIWDIRSGP----------------KKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQ 333 (440)
T ss_pred ceEEeeecCceEEEEEecCCC----------------ccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhh
Confidence 678999999999999776651 1123333 78999999999999888999999999999999975
Q ss_pred ---CeEEEEecccCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECC
Q 006229 587 ---FTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTE 627 (655)
Q Consensus 587 ---~~~l~tl~gH~~~ItsVafsPd-g~~LaSgS~DgtVrVWDl~ 627 (655)
+.++.+|+-|...|+||.|+|. ...|+.+|.|..|.|||+.
T Consensus 334 ~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 334 FKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred ccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence 4678899999999999999994 4678888999999999986
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.4e-12 Score=134.07 Aligned_cols=174 Identities=18% Similarity=0.301 Sum_probs=133.7
Q ss_pred ceeccCCCCceEEEEecCCCCc------c--cccCcccCCCCcEEEeccCCCcEEEEe------cCCCCCCC--------
Q 006229 473 TLQHNGASSKSLLMFGSDGMGS------L--TSAPNQLTDMDRFVDDGSLDDNVESFL------SPDDADPR-------- 530 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~~------l--asss~~l~~~~~~LasGS~D~tV~vW~------s~d~~d~~-------- 530 (655)
.++.+.+.|.+..+|+.+.... . .+.+..|...+.+++++|.|++..+|- .+......
T Consensus 161 pi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~ 240 (481)
T KOG0300|consen 161 PICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEE 240 (481)
T ss_pred cceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhh
Confidence 4667778899999999876211 1 123446677778899999999999994 22211101
Q ss_pred ---Cccccccc---cCCCcee-eeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEE
Q 006229 531 ---DRVGRSAE---VGKGFTF-TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603 (655)
Q Consensus 531 ---d~~~~l~d---~~~~~t~-~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsV 603 (655)
|.-.+..+ ..++.+. .++..+.+|.+.|.|++|-..|..++++++|.+..+||+++++.+..|.||....+.+
T Consensus 241 e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHc 320 (481)
T KOG0300|consen 241 EHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHC 320 (481)
T ss_pred hcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhcccc
Confidence 11111111 2233333 3677899999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCC-CeEEEEEecccceeeeec
Q 006229 604 RFSPSLSRLATSSADRTVRVWDTEN-VRKLTFICCYKCIFVSTA 646 (655)
Q Consensus 604 afsPdg~~LaSgS~DgtVrVWDl~t-g~~v~~l~~~~~~v~s~~ 646 (655)
+-+|.-++++|+|.|.+.|+||++. -..+..|.+|...+.+..
T Consensus 321 stHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~v 364 (481)
T KOG0300|consen 321 STHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVV 364 (481)
T ss_pred ccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEE
Confidence 9999999999999999999999984 345678888887665443
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.4e-13 Score=147.20 Aligned_cols=111 Identities=23% Similarity=0.327 Sum_probs=96.6
Q ss_pred cEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCC
Q 006229 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE 585 (655)
Q Consensus 507 ~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSp-dG~lLaSgs~DgtVrIWDl~ 585 (655)
..|+.++.|+.|++|....+... ..+......+.+|..+|+++.|+| -...|+++++|.+|+|||+.
T Consensus 641 ~rLAVa~ddg~i~lWr~~a~gl~------------e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~ 708 (1012)
T KOG1445|consen 641 ERLAVATDDGQINLWRLTANGLP------------ENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA 708 (1012)
T ss_pred HHeeecccCceEEEEEeccCCCC------------cccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh
Confidence 56899999999999966554211 112345677889999999999999 56699999999999999999
Q ss_pred CCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 006229 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENV 629 (655)
Q Consensus 586 t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg 629 (655)
+++....|.||++-|.+++|+|+|+++||.|.||+||||..+++
T Consensus 709 ~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~ 752 (1012)
T KOG1445|consen 709 NAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSR 752 (1012)
T ss_pred hhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCC
Confidence 99999999999999999999999999999999999999998864
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.7e-12 Score=135.81 Aligned_cols=132 Identities=24% Similarity=0.398 Sum_probs=109.6
Q ss_pred EEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCC--
Q 006229 508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE-- 585 (655)
Q Consensus 508 ~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~-- 585 (655)
++++|+.|..|++|....+.... ......-+..+..|...|++|.|+|+|.+||||+.++.|.+|-..
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~----------~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~ 97 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGG----------GDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDV 97 (434)
T ss_pred ceecccCccceeeeeeeecCCCC----------CceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCc
Confidence 89999999999999554442111 113456678889999999999999999999999999999999543
Q ss_pred ------C--------CeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEE
Q 006229 586 ------S--------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCF 651 (655)
Q Consensus 586 ------t--------~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~ 651 (655)
+ ....+.+.+|...|++++|+|++.++++++.|.++++||++.|..+..+..|...+. .++
T Consensus 98 ~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvq-----gva 172 (434)
T KOG1009|consen 98 RIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQ-----GVA 172 (434)
T ss_pred CCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccc-----eee
Confidence 2 345678889999999999999999999999999999999999999999888876554 455
Q ss_pred Eec
Q 006229 652 FAP 654 (655)
Q Consensus 652 F~P 654 (655)
|.|
T Consensus 173 wDp 175 (434)
T KOG1009|consen 173 WDP 175 (434)
T ss_pred cch
Confidence 554
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.4e-12 Score=146.08 Aligned_cols=112 Identities=21% Similarity=0.334 Sum_probs=94.2
Q ss_pred CCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcC-CCCEEEEEeCCCcEEE
Q 006229 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVL 581 (655)
Q Consensus 503 ~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSp-dG~lLaSgs~DgtVrI 581 (655)
|-.+.||.+.|.|+|||+|..... .|+.+| .|.+.|+||+|+| |.++|++|+-|++|||
T Consensus 377 WSKn~fLLSSSMDKTVRLWh~~~~-------------------~CL~~F-~HndfVTcVaFnPvDDryFiSGSLD~KvRi 436 (712)
T KOG0283|consen 377 WSKNNFLLSSSMDKTVRLWHPGRK-------------------ECLKVF-SHNDFVTCVAFNPVDDRYFISGSLDGKVRL 436 (712)
T ss_pred cccCCeeEeccccccEEeecCCCc-------------------ceeeEE-ecCCeeEEEEecccCCCcEeecccccceEE
Confidence 445588999999999999943221 455544 6999999999999 9999999999999999
Q ss_pred EeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEE
Q 006229 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFI 635 (655)
Q Consensus 582 WDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l 635 (655)
|++...+.+ .+..-.+.|++|||+|||.+.+.|+.+|.+++|+++..+.+..+
T Consensus 437 WsI~d~~Vv-~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~ 489 (712)
T KOG0283|consen 437 WSISDKKVV-DWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDF 489 (712)
T ss_pred eecCcCeeE-eehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEee
Confidence 999886655 45556689999999999999999999999999999987766544
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.5e-12 Score=145.81 Aligned_cols=141 Identities=22% Similarity=0.268 Sum_probs=121.1
Q ss_pred CCCCceeccCCCCceEEEEecCC--------CCcccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccC
Q 006229 469 ISRPTLQHNGASSKSLLMFGSDG--------MGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVG 540 (655)
Q Consensus 469 ~s~~~~~~s~S~d~s~l~ws~dg--------~~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~ 540 (655)
+++..+++.+--+.++.+|..|. .+.+.+.+.++.+.+..++|||.|++|++|-..=|
T Consensus 517 Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFG-------------- 582 (888)
T KOG0306|consen 517 SPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFG-------------- 582 (888)
T ss_pred cCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccc--------------
Confidence 34556666666778888887776 22455667788899999999999999999922211
Q ss_pred CCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCc
Q 006229 541 KGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620 (655)
Q Consensus 541 ~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~Dgt 620 (655)
.|.+.+.+|.+.|.+|.|-|+..+++|+|.|+.|+-||-+..+++.++.+|...|+|++.+|+|.+++|+|.|.+
T Consensus 583 -----DCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~s 657 (888)
T KOG0306|consen 583 -----DCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKS 657 (888)
T ss_pred -----hhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCce
Confidence 467788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCC
Q 006229 621 VRVWDTEN 628 (655)
Q Consensus 621 VrVWDl~t 628 (655)
||+|.-..
T Consensus 658 IRlwE~td 665 (888)
T KOG0306|consen 658 IRLWERTD 665 (888)
T ss_pred eEeeeccC
Confidence 99998654
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.6e-12 Score=137.78 Aligned_cols=156 Identities=18% Similarity=0.182 Sum_probs=119.4
Q ss_pred ceeccCCCCceEEEEecCCCCc--------ccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCce
Q 006229 473 TLQHNGASSKSLLMFGSDGMGS--------LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFT 544 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~~--------lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t 544 (655)
.++..+.....+.+|....... -.++...|.+.+..+.+||.|+.|.+|...+-.+ .....+
T Consensus 94 ~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~----------a~~~~~ 163 (476)
T KOG0646|consen 94 YFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVS----------ADNDHS 163 (476)
T ss_pred eEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecc----------cccCCC
Confidence 4555555777888888765221 2334446778888999999999999995544322 122224
Q ss_pred eeeEEeecCCCCCeeEEEEcCCC--CEEEEEeCCCcEEEEeCCCCe----------------------------------
Q 006229 545 FTEFQLIPASTSKVESCHFSPDG--KLLATGGHDKKAVLWCTESFT---------------------------------- 588 (655)
Q Consensus 545 ~~~v~~l~gH~~~V~sl~fSpdG--~lLaSgs~DgtVrIWDl~t~~---------------------------------- 588 (655)
.+.+..+..|+-+|+++...+.| .+|+|+|.|.+||+||+..+.
T Consensus 164 ~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~ 243 (476)
T KOG0646|consen 164 VKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQ 243 (476)
T ss_pred ccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEe
Confidence 56788889999999999888743 489999999999999865331
Q ss_pred -----------------------EEEEecccCC--CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecc
Q 006229 589 -----------------------VKSTLEEHTQ--WITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCY 638 (655)
Q Consensus 589 -----------------------~l~tl~gH~~--~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~ 638 (655)
.+..+.||.+ .|+|++++-||++|+||+.||.|+|||+.+..|++++...
T Consensus 244 ~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~ 318 (476)
T KOG0646|consen 244 NLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTS 318 (476)
T ss_pred eehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhh
Confidence 2345567888 9999999999999999999999999999999999888743
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2e-12 Score=136.78 Aligned_cols=124 Identities=20% Similarity=0.351 Sum_probs=104.6
Q ss_pred eeccCCCCceEEEEecCCCCcccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecC
Q 006229 474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA 553 (655)
Q Consensus 474 ~~~s~S~d~s~l~ws~dg~~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~g 553 (655)
++.........+.|+++|+ ++|++|.|.++-+|....+. .++...++.+
T Consensus 219 il~~htdEVWfl~FS~nGk---------------yLAsaSkD~Taiiw~v~~d~----------------~~kl~~tlvg 267 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNGK---------------YLASASKDSTAIIWIVVYDV----------------HFKLKKTLVG 267 (519)
T ss_pred hHhhCCCcEEEEEEcCCCe---------------eEeeccCCceEEEEEEecCc----------------ceeeeeeeec
Confidence 3344444555666666555 99999999999999554431 2567788999
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec-ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 006229 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (655)
Q Consensus 554 H~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~-gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~t 628 (655)
|..+|..|.||||.++|++|+.|..+++||+.+|.+.+.+. +|...+.|++|+|||..+++||.|++|..||++.
T Consensus 268 h~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg 343 (519)
T KOG0293|consen 268 HSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG 343 (519)
T ss_pred ccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCc
Confidence 99999999999999999999999999999999999988774 5678999999999999999999999999999974
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-12 Score=134.96 Aligned_cols=91 Identities=27% Similarity=0.441 Sum_probs=83.9
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEec
Q 006229 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICC 637 (655)
Q Consensus 558 V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~ 637 (655)
..||.|++-|.+||+|+.||.|.|||+.|...-+.|.+|..+|+|||||+||+.|+|+|.|..|++||+..|.+++.+.-
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf 105 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF 105 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999877653
Q ss_pred ccceeeeeceeeEEEec
Q 006229 638 YKCIFVSTAIGSCFFAP 654 (655)
Q Consensus 638 ~~~~v~s~~Vss~~F~P 654 (655)
...|..+.|||
T Consensus 106 ------~spv~~~q~hp 116 (405)
T KOG1273|consen 106 ------DSPVWGAQWHP 116 (405)
T ss_pred ------cCccceeeecc
Confidence 34566777887
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.8e-12 Score=129.93 Aligned_cols=159 Identities=19% Similarity=0.204 Sum_probs=110.8
Q ss_pred CCCCceeccCCCCceEEEEecCCCC--------cc-cccCcccCCCCcEEEeccCCCcEEEEecCCCCCC----------
Q 006229 469 ISRPTLQHNGASSKSLLMFGSDGMG--------SL-TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADP---------- 529 (655)
Q Consensus 469 ~s~~~~~~s~S~d~s~l~ws~dg~~--------~l-asss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~---------- 529 (655)
..+...+.+++.++.+.+|+..... .. .+....+...+..+.+.+.|++||+|+..++...
T Consensus 109 ~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~Vt 188 (334)
T KOG0278|consen 109 SQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVT 188 (334)
T ss_pred cccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCc
Confidence 3344556666666777776655411 00 0111111222344566689999999998887621
Q ss_pred --------CC------ccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe-c
Q 006229 530 --------RD------RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-E 594 (655)
Q Consensus 530 --------~d------~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl-~ 594 (655)
+. ..+.+|+... +..++.++- ...|.+...+|+...+++|+.|..++.||..++..+..+ +
T Consensus 189 SlEvs~dG~ilTia~gssV~Fwdaks---f~~lKs~k~-P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nk 264 (334)
T KOG0278|consen 189 SLEVSQDGRILTIAYGSSVKFWDAKS---FGLLKSYKM-PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNK 264 (334)
T ss_pred ceeeccCCCEEEEecCceeEEecccc---ccceeeccC-ccccccccccCCCceEEecCcceEEEEEeccCCceeeeccc
Confidence 11 1123343332 333433332 346889999999999999999999999999999999886 8
Q ss_pred ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE
Q 006229 595 EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRK 631 (655)
Q Consensus 595 gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~ 631 (655)
+|.++|.||+|+|+|...++||.||+||||-+..+..
T Consensus 265 gh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 265 GHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred CCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 9999999999999999999999999999998875543
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.4e-13 Score=139.62 Aligned_cols=108 Identities=25% Similarity=0.430 Sum_probs=96.3
Q ss_pred eeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC---CeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCc
Q 006229 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620 (655)
Q Consensus 544 t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t---~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~Dgt 620 (655)
...+..++..|++.|.-|.||++|++|||++.|.++-||++.. .+.++++.||...|..|.|+||.++|++|+.|..
T Consensus 213 p~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~ 292 (519)
T KOG0293|consen 213 PSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEV 292 (519)
T ss_pred CchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHh
Confidence 3456778889999999999999999999999999999998743 4678999999999999999999999999999999
Q ss_pred EEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 621 VRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 621 VrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
+++||+.+|.+.+.+... ....+.+|+|.||
T Consensus 293 ~~lwDv~tgd~~~~y~~~----~~~S~~sc~W~pD 323 (519)
T KOG0293|consen 293 LSLWDVDTGDLRHLYPSG----LGFSVSSCAWCPD 323 (519)
T ss_pred eeeccCCcchhhhhcccC----cCCCcceeEEccC
Confidence 999999999999888655 2456789999997
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.2e-12 Score=137.80 Aligned_cols=140 Identities=14% Similarity=0.199 Sum_probs=115.4
Q ss_pred CCceeccCCCCceEEEEecCCCCc-ccccC------------------cccCCCCcEEEeccCCCcEEEEecCCCCCCCC
Q 006229 471 RPTLQHNGASSKSLLMFGSDGMGS-LTSAP------------------NQLTDMDRFVDDGSLDDNVESFLSPDDADPRD 531 (655)
Q Consensus 471 ~~~~~~s~S~d~s~l~ws~dg~~~-lasss------------------~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d 531 (655)
...+.++++-|+.+++|+...... ++.+. .+..+.+..+++|+..+.+++|+....
T Consensus 129 ~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~----- 203 (735)
T KOG0308|consen 129 NNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTC----- 203 (735)
T ss_pred CceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccc-----
Confidence 336778889999999999874211 11111 022333356788888888888854433
Q ss_pred ccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCE
Q 006229 532 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR 611 (655)
Q Consensus 532 ~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~ 611 (655)
+.+-.++||+..|.++..+.||..++++|.|++|||||+..-+|+.++..|+..|+++..+|+-.+
T Consensus 204 --------------~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~ 269 (735)
T KOG0308|consen 204 --------------KKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTH 269 (735)
T ss_pred --------------cceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcce
Confidence 567778899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCcEEEEECCCC
Q 006229 612 LATSSADRTVRVWDTENV 629 (655)
Q Consensus 612 LaSgS~DgtVrVWDl~tg 629 (655)
+++|+.||.|..=|+++.
T Consensus 270 vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 270 VYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred EEecCCCCcEEecccCCc
Confidence 999999999999999985
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.35 E-value=3e-12 Score=143.86 Aligned_cols=160 Identities=18% Similarity=0.179 Sum_probs=117.4
Q ss_pred CCCCCCCceeccCCCCceEEEEecCCCCc---ccccCc-----ccCCC-CcEEEeccCCCcEEEEecCCCCCCCCccccc
Q 006229 466 GDVISRPTLQHNGASSKSLLMFGSDGMGS---LTSAPN-----QLTDM-DRFVDDGSLDDNVESFLSPDDADPRDRVGRS 536 (655)
Q Consensus 466 g~~~s~~~~~~s~S~d~s~l~ws~dg~~~---lasss~-----~l~~~-~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l 536 (655)
.-.+..+.++.+++.|..+.+|+...... +.+.+. .|.+. ...++++...|.+.+|+..-.
T Consensus 140 dfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp---------- 209 (839)
T KOG0269|consen 140 DFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQP---------- 209 (839)
T ss_pred eeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCc----------
Confidence 33355668999999999999999876321 222222 22222 244677777788888855433
Q ss_pred cccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecc-cCCCEEEEEEcCCCCE-EEE
Q 006229 537 AEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSR-LAT 614 (655)
Q Consensus 537 ~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~g-H~~~ItsVafsPdg~~-LaS 614 (655)
.+++..+.+|.++|.||.|+|++.||||||.||+|+|||+.+.+......- ....|.+|+|.|+..+ |||
T Consensus 210 --------~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAt 281 (839)
T KOG0269|consen 210 --------DRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLAT 281 (839)
T ss_pred --------hhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhh
Confidence 246677889999999999999999999999999999999987654333332 3467999999998765 788
Q ss_pred EeC--CCcEEEEECCCC-eEEEEEecccceee
Q 006229 615 SSA--DRTVRVWDTENV-RKLTFICCYKCIFV 643 (655)
Q Consensus 615 gS~--DgtVrVWDl~tg-~~v~~l~~~~~~v~ 643 (655)
++. |..|+|||++.+ -...+|.+|+..+.
T Consensus 282 csmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt 313 (839)
T KOG0269|consen 282 CSMVVDTSVHVWDVRRPYIPYATFLEHTDSVT 313 (839)
T ss_pred hhccccceEEEEeeccccccceeeeccCcccc
Confidence 774 888999999854 44577888877554
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.35 E-value=5e-12 Score=136.76 Aligned_cols=162 Identities=17% Similarity=0.224 Sum_probs=123.9
Q ss_pred ceeccCCCCceEEEEecCC--------------CCcccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccc
Q 006229 473 TLQHNGASSKSLLMFGSDG--------------MGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAE 538 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg--------------~~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d 538 (655)
....+++.|.++.+|+.+. ..++.++++.+.....+||.|+.||+|.+|....- +
T Consensus 282 ~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~------~----- 350 (641)
T KOG0772|consen 282 EEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSR------T----- 350 (641)
T ss_pred cceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCc------c-----
Confidence 5667888899999999876 22344556677788888999999999999953211 1
Q ss_pred cCCCceeeeEEeecCCCC--CeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC-eEEEEecccC--CCEEEEEEcCCCCEEE
Q 006229 539 VGKGFTFTEFQLIPASTS--KVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHT--QWITDVRFSPSLSRLA 613 (655)
Q Consensus 539 ~~~~~t~~~v~~l~gH~~--~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~-~~l~tl~gH~--~~ItsVafsPdg~~La 613 (655)
+. ..+..-.+|.. .|+||.||+||++|++-|.|.++++||++.. +++.++.+-. -.-+.++|+|+.++|+
T Consensus 351 v~-----p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~ 425 (641)
T KOG0772|consen 351 VR-----PVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLIL 425 (641)
T ss_pred cc-----cceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEE
Confidence 11 12333457777 8999999999999999999999999999876 4666665543 3457899999999999
Q ss_pred EEeC------CCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 614 TSSA------DRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 614 SgS~------DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
||+. -|++.+||..+...+..+... ...|..|.|||.
T Consensus 426 TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~-----~aSvv~~~Whpk 468 (641)
T KOG0772|consen 426 TGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS-----TASVVRCLWHPK 468 (641)
T ss_pred ecccccCCCCCceEEEEeccceeeEEEecCC-----CceEEEEeecch
Confidence 9874 567999999999888877654 334568999983
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.6e-12 Score=139.08 Aligned_cols=143 Identities=23% Similarity=0.340 Sum_probs=112.7
Q ss_pred ccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccC--CCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCc
Q 006229 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVG--KGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKK 578 (655)
Q Consensus 501 ~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~--~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~Dgt 578 (655)
.+.+.+.++.+++-|++|--|....+.+.+...-+. ++. .+...++-+ ++|...|.|++.|+||+||++|+.|..
T Consensus 149 als~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~-ev~k~~~~~~k~~r--~~h~keil~~avS~Dgkylatgg~d~~ 225 (479)
T KOG0299|consen 149 ALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERD-EVLKSHGNPLKESR--KGHVKEILTLAVSSDGKYLATGGRDRH 225 (479)
T ss_pred EeeccccceeecCCCcceeeeehhcCcccccccccc-hhhhhccCCCCccc--ccccceeEEEEEcCCCcEEEecCCCce
Confidence 344455688999999999999887775332211111 111 121122222 489999999999999999999999999
Q ss_pred EEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeec
Q 006229 579 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTA 646 (655)
Q Consensus 579 VrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~ 646 (655)
|.|||+++++.+.+|.+|.+.|.+++|......|+++|.|++|+||++.....+.++-+|...+..+.
T Consensus 226 v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 226 VQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID 293 (479)
T ss_pred EEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence 99999999999999999999999999998888999999999999999998888877777776665444
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.4e-12 Score=127.91 Aligned_cols=128 Identities=23% Similarity=0.331 Sum_probs=95.2
Q ss_pred ceEEEEecCCCCcccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEE
Q 006229 482 KSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESC 561 (655)
Q Consensus 482 ~s~l~ws~dg~~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl 561 (655)
...+.|+.+|. .+++|++|++|++|.+.-+. +...-..++|++.|-.+
T Consensus 23 v~Sv~wn~~g~---------------~lasgs~dktv~v~n~e~~r-----------------~~~~~~~~gh~~svdql 70 (313)
T KOG1407|consen 23 VHSVAWNCDGT---------------KLASGSFDKTVSVWNLERDR-----------------FRKELVYRGHTDSVDQL 70 (313)
T ss_pred ceEEEEcccCc---------------eeeecccCCceEEEEecchh-----------------hhhhhcccCCCcchhhh
Confidence 34566776655 78999999999999553331 11223456777778888
Q ss_pred EEcC-CCCEEEEEeCCCcEEEEeCCCCeE---------------------------------------------------
Q 006229 562 HFSP-DGKLLATGGHDKKAVLWCTESFTV--------------------------------------------------- 589 (655)
Q Consensus 562 ~fSp-dG~lLaSgs~DgtVrIWDl~t~~~--------------------------------------------------- 589 (655)
+|+| ...+|++++.|++||+||++.+++
T Consensus 71 ~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ 150 (313)
T KOG1407|consen 71 CWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEV 150 (313)
T ss_pred eeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhccccee
Confidence 8877 455788888888888887654322
Q ss_pred -------------------------------EEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecc
Q 006229 590 -------------------------------KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCY 638 (655)
Q Consensus 590 -------------------------------l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~ 638 (655)
+.++++|...+.||.|+|+|++||+||.|..|.|||+...-|++.|.-+
T Consensus 151 ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRl 230 (313)
T KOG1407|consen 151 NEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRL 230 (313)
T ss_pred eeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccc
Confidence 2344559999999999999999999999999999999998888887655
Q ss_pred cce
Q 006229 639 KCI 641 (655)
Q Consensus 639 ~~~ 641 (655)
+=.
T Consensus 231 dwp 233 (313)
T KOG1407|consen 231 DWP 233 (313)
T ss_pred cCc
Confidence 443
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.6e-11 Score=121.55 Aligned_cols=132 Identities=22% Similarity=0.275 Sum_probs=97.8
Q ss_pred cEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 006229 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (655)
Q Consensus 507 ~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t 586 (655)
-.+++||-|.+|++|+...... ++..+.. +.. .. -.++.|.+|++.|.|++|++|..|..+.+||++.
T Consensus 195 ~m~~sgsqdktirfwdlrv~~~-----v~~l~~~----~~~-~g--lessavaav~vdpsgrll~sg~~dssc~lydirg 262 (350)
T KOG0641|consen 195 AMFASGSQDKTIRFWDLRVNSC-----VNTLDND----FHD-GG--LESSAVAAVAVDPSGRLLASGHADSSCMLYDIRG 262 (350)
T ss_pred cEEEccCCCceEEEEeeeccce-----eeeccCc----ccC-CC--cccceeEEEEECCCcceeeeccCCCceEEEEeeC
Confidence 5688999999999996544310 0000000 000 00 0236799999999999999999999999999999
Q ss_pred CeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC----eEEEEEecccceeeeeceeeEEEecC
Q 006229 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENV----RKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 587 ~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg----~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
++.+..|..|+..|.||+|+|...|++|||.|..|||=|+..- -.+..+..|... +.-|.|||.
T Consensus 263 ~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk-----~i~~rwh~~ 330 (350)
T KOG0641|consen 263 GRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDK-----AIQCRWHPQ 330 (350)
T ss_pred CceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCc-----eEEEEecCc
Confidence 9999999999999999999999999999999999999998631 112223333332 336888884
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.3e-12 Score=136.19 Aligned_cols=103 Identities=22% Similarity=0.231 Sum_probs=90.9
Q ss_pred eEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 006229 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (655)
Q Consensus 547 ~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl 626 (655)
++..+.-..+.|..++|+|||++||+.+.|+.+||+|.++.+++..++..-+...||+|+|||+||+||++|-.|.||.+
T Consensus 282 Pv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf 361 (636)
T KOG2394|consen 282 PVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSF 361 (636)
T ss_pred ccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEe
Confidence 44444445668999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred CCCeEEEEEecccceeeeeceeeEEEec
Q 006229 627 ENVRKLTFICCYKCIFVSTAIGSCFFAP 654 (655)
Q Consensus 627 ~tg~~v~~l~~~~~~v~s~~Vss~~F~P 654 (655)
..++.|..-.+|.+.|. .++|.|
T Consensus 362 ~erRVVARGqGHkSWVs-----~VaFDp 384 (636)
T KOG2394|consen 362 EERRVVARGQGHKSWVS-----VVAFDP 384 (636)
T ss_pred ccceEEEecccccccee-----eEeecc
Confidence 99999988888887765 455554
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.2e-12 Score=126.42 Aligned_cols=142 Identities=23% Similarity=0.398 Sum_probs=109.0
Q ss_pred CCCceeccCCCCceEEEEecCCCC--------ccccc--CcccC--CCCcEEEeccCCCcEEEEecCCCCCCCCcccccc
Q 006229 470 SRPTLQHNGASSKSLLMFGSDGMG--------SLTSA--PNQLT--DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSA 537 (655)
Q Consensus 470 s~~~~~~s~S~d~s~l~ws~dg~~--------~lass--s~~l~--~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~ 537 (655)
..+.++++++.|+.+++|.-.+.. ..-.+ +..+. ..+-.|+++|.|++|.++...+.. .|
T Consensus 68 k~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g--------~w 139 (299)
T KOG1332|consen 68 KFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSG--------GW 139 (299)
T ss_pred ccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCC--------Cc
Confidence 345789999999999999987621 11122 22333 334668999999999999554431 11
Q ss_pred ccCCCceeeeEEeecCCCCCeeEEEEcCC---C-----------CEEEEEeCCCcEEEEeCCCC--eEEEEecccCCCEE
Q 006229 538 EVGKGFTFTEFQLIPASTSKVESCHFSPD---G-----------KLLATGGHDKKAVLWCTESF--TVKSTLEEHTQWIT 601 (655)
Q Consensus 538 d~~~~~t~~~v~~l~gH~~~V~sl~fSpd---G-----------~lLaSgs~DgtVrIWDl~t~--~~l~tl~gH~~~It 601 (655)
...++...|.-.|++++|.|- | +.|++|+.|..|+||+.+.+ +..++|.+|++.|+
T Consensus 140 --------~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVR 211 (299)
T KOG1332|consen 140 --------TTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVR 211 (299)
T ss_pred --------cchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhh
Confidence 223445689999999999994 5 67999999999999998765 45567999999999
Q ss_pred EEEEcCCC----CEEEEEeCCCcEEEEECC
Q 006229 602 DVRFSPSL----SRLATSSADRTVRVWDTE 627 (655)
Q Consensus 602 sVafsPdg----~~LaSgS~DgtVrVWDl~ 627 (655)
+|+|+|.- .+|||||.||+|.||-.+
T Consensus 212 DVAwaP~~gl~~s~iAS~SqDg~viIwt~~ 241 (299)
T KOG1332|consen 212 DVAWAPSVGLPKSTIASCSQDGTVIIWTKD 241 (299)
T ss_pred hhhhccccCCCceeeEEecCCCcEEEEEec
Confidence 99999964 479999999999999876
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=6e-12 Score=129.70 Aligned_cols=155 Identities=10% Similarity=0.089 Sum_probs=119.3
Q ss_pred CCCCceeccCCCCceEEEEecCCC---------CcccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCcccccccc
Q 006229 469 ISRPTLQHNGASSKSLLMFGSDGM---------GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEV 539 (655)
Q Consensus 469 ~s~~~~~~s~S~d~s~l~ws~dg~---------~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~ 539 (655)
+.+...+++++.|+.+.+|..... ..-+++...|...+.-+.++|+|.+|++.-..++
T Consensus 272 SRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG------------- 338 (508)
T KOG0275|consen 272 SRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSG------------- 338 (508)
T ss_pred cccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccc-------------
Confidence 344466788888999999987641 1223444455666667788889999988833333
Q ss_pred CCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecc------------------------
Q 006229 540 GKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE------------------------ 595 (655)
Q Consensus 540 ~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~g------------------------ 595 (655)
++++.++||++.|+...|.+||..+++++.||+|+||+..+++|+.+|+.
T Consensus 339 ------K~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCN 412 (508)
T KOG0275|consen 339 ------KCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCN 412 (508)
T ss_pred ------hhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEc
Confidence 67788899999999999999999999999999999999988777666542
Q ss_pred -----------------------cCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEeccccee
Q 006229 596 -----------------------HTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIF 642 (655)
Q Consensus 596 -----------------------H~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v 642 (655)
..+...+.+++|.|.++...+.|+.++.+.+.+|+.-+++..|...+
T Consensus 413 rsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdv 482 (508)
T KOG0275|consen 413 RSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDV 482 (508)
T ss_pred CCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccc
Confidence 11233455678999999999999999999999999888887776544
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.2e-11 Score=139.93 Aligned_cols=161 Identities=20% Similarity=0.246 Sum_probs=117.2
Q ss_pred ceeccCCCCceEEEEecCCCC--c------------ccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccc
Q 006229 473 TLQHNGASSKSLLMFGSDGMG--S------------LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAE 538 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~--~------------lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d 538 (655)
.+....-.+..+..|+..... . ..+....+...+.|+..|+..|+|.+|+..++-
T Consensus 413 Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi----------- 481 (910)
T KOG1539|consen 413 NVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGI----------- 481 (910)
T ss_pred ceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCe-----------
Confidence 344444456677777765521 1 222233556777888888888889888776651
Q ss_pred cCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC-------------------------------
Q 006229 539 VGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF------------------------------- 587 (655)
Q Consensus 539 ~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~------------------------------- 587 (655)
....+..-..|.++|+.++...-++++++++.||.+++||....
T Consensus 482 -----~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf 556 (910)
T KOG1539|consen 482 -----HRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDF 556 (910)
T ss_pred -----eecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCce
Confidence 11112223578999999999888889999999999999976432
Q ss_pred ----------eEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 588 ----------TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 588 ----------~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
+.++.|.||.+.|++++|||||++|+|++.|++||+||+-++.++-.+... ..+.++.|+|+
T Consensus 557 ~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd------~~~~sls~SPn 628 (910)
T KOG1539|consen 557 SIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD------SPCTSLSFSPN 628 (910)
T ss_pred eEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC------CcceeeEECCC
Confidence 344567789999999999999999999999999999999999988655433 33446888885
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.3e-11 Score=141.09 Aligned_cols=137 Identities=19% Similarity=0.327 Sum_probs=101.9
Q ss_pred ceeccCCCCceEEEEecCC---CC---ccc--ccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCce
Q 006229 473 TLQHNGASSKSLLMFGSDG---MG---SLT--SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFT 544 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg---~~---~la--sss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t 544 (655)
..+.+++.+.++..|.-+. .+ ++. .....+...+.+++.||.|-.|++....|.
T Consensus 67 ~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~------------------ 128 (933)
T KOG1274|consen 67 NHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDS------------------ 128 (933)
T ss_pred cceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEecccc------------------
Confidence 3566667777777776543 11 112 222355666779999999999999966555
Q ss_pred eeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecc-----------------------------
Q 006229 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE----------------------------- 595 (655)
Q Consensus 545 ~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~g----------------------------- 595 (655)
..++.+++|.++|.+|.|+|.+.+||+.+.||+|+|||+.++.+..++.+
T Consensus 129 -s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~ 207 (933)
T KOG1274|consen 129 -SQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPP 207 (933)
T ss_pred -chheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeec
Confidence 35677899999999999999999999999999999999876544333321
Q ss_pred -----------------------cCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 006229 596 -----------------------HTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (655)
Q Consensus 596 -----------------------H~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~t 628 (655)
|...++++.|+|+|.|||+++.||.|.|||+++
T Consensus 208 ~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 208 VDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred cCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 334477888888888888888888888888875
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.1e-11 Score=130.70 Aligned_cols=181 Identities=18% Similarity=0.234 Sum_probs=135.9
Q ss_pred CCCCCceeccCCCCceEEEEecCCCCc--------ccccCcccCCCCcEEEeccCCCcEEEEecCCCC------------
Q 006229 468 VISRPTLQHNGASSKSLLMFGSDGMGS--------LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDA------------ 527 (655)
Q Consensus 468 ~~s~~~~~~s~S~d~s~l~ws~dg~~~--------lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~------------ 527 (655)
.+++..+++++..+..+.+|+.+.... -.+....|.....-+.++|.|.+|++|....-.
T Consensus 210 vS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v 289 (479)
T KOG0299|consen 210 VSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGV 289 (479)
T ss_pred EcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccce
Confidence 356778999999999999999987221 233344566666778899999999999654432
Q ss_pred --------------CCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe
Q 006229 528 --------------DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL 593 (655)
Q Consensus 528 --------------d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl 593 (655)
.++|+..++|++.+. .--++.+|.+.|-||+|-.+ ..|+|||.||.|.+|++.+.+++.+.
T Consensus 290 ~~IdaL~reR~vtVGgrDrT~rlwKi~ee----sqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~ 364 (479)
T KOG0299|consen 290 LGIDALSRERCVTVGGRDRTVRLWKIPEE----SQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTS 364 (479)
T ss_pred eeechhcccceEEeccccceeEEEecccc----ceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEe
Confidence 457888899988443 22356788899999999854 46899999999999999988887766
Q ss_pred c-cc-----------CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 594 E-EH-----------TQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 594 ~-gH-----------~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
. +| ...|++|+..|...+++|||.||.||||-+..+-.- +..-..+.....|++++|+++
T Consensus 365 ~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~--i~~l~~ls~~GfVNsl~f~~s 436 (479)
T KOG0299|consen 365 RLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRA--INLLYSLSLVGFVNSLAFSNS 436 (479)
T ss_pred eccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccc--cceeeecccccEEEEEEEccC
Confidence 4 33 238999999999999999999999999999876321 222222234556778888764
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.5e-11 Score=126.59 Aligned_cols=129 Identities=25% Similarity=0.384 Sum_probs=102.3
Q ss_pred ecCCCCcccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCC
Q 006229 488 GSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDG 567 (655)
Q Consensus 488 s~dg~~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG 567 (655)
...|+..+++...-+.+. .-++++|+|.+..+|++..+ ..+..+.||....+.|+-+|..
T Consensus 267 ~ltgH~~vV~a~dWL~gg-~Q~vTaSWDRTAnlwDVEtg-------------------e~v~~LtGHd~ELtHcstHptQ 326 (481)
T KOG0300|consen 267 RLTGHRAVVSACDWLAGG-QQMVTASWDRTANLWDVETG-------------------EVVNILTGHDSELTHCSTHPTQ 326 (481)
T ss_pred eeeccccceEehhhhcCc-ceeeeeeccccceeeeeccC-------------------ceeccccCcchhccccccCCcc
Confidence 344443444444333333 56778999999999966555 6788899999999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCC-CeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE-EEEEec
Q 006229 568 KLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRK-LTFICC 637 (655)
Q Consensus 568 ~lLaSgs~DgtVrIWDl~t-~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~-v~~l~~ 637 (655)
+++++.+.|.+.|+||++. -..+..|.||++.|+++.|.-+ ..++|||.|.+|||||+++... +.++..
T Consensus 327 rLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRsplATIRt 397 (481)
T KOG0300|consen 327 RLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPLATIRT 397 (481)
T ss_pred eEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccCcceeeec
Confidence 9999999999999999974 3567889999999999999864 6799999999999999997643 445543
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.1e-11 Score=126.42 Aligned_cols=143 Identities=20% Similarity=0.244 Sum_probs=116.9
Q ss_pred CceEEEEecCCCCcccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeE
Q 006229 481 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 560 (655)
Q Consensus 481 d~s~l~ws~dg~~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~s 560 (655)
|-+++.|.......++++ +.++..++++|+.|....+|...++ .....+.+|++.|+|
T Consensus 54 DdS~~tF~~H~~svFavs---l~P~~~l~aTGGgDD~AflW~~~~g-------------------e~~~eltgHKDSVt~ 111 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAVS---LHPNNNLVATGGGDDLAFLWDISTG-------------------EFAGELTGHKDSVTC 111 (399)
T ss_pred ccceeehhhcCCceEEEE---eCCCCceEEecCCCceEEEEEccCC-------------------cceeEecCCCCceEE
Confidence 334444444333333333 3556789999999999999976665 355677899999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccc
Q 006229 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKC 640 (655)
Q Consensus 561 l~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~ 640 (655)
+.||.||.+||||+.+|.|+||.+.++....++.+--..|--++|+|.+..|+.|+.||.|-+|.+.+......+.+|..
T Consensus 112 ~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~ 191 (399)
T KOG0296|consen 112 CSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNS 191 (399)
T ss_pred EEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCC
Confidence 99999999999999999999999999999888887778889999999999999999999999999999877788888776
Q ss_pred eeeee
Q 006229 641 IFVST 645 (655)
Q Consensus 641 ~v~s~ 645 (655)
.+.+.
T Consensus 192 ~ct~G 196 (399)
T KOG0296|consen 192 PCTCG 196 (399)
T ss_pred Ccccc
Confidence 55443
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.3e-11 Score=124.71 Aligned_cols=146 Identities=17% Similarity=0.242 Sum_probs=118.1
Q ss_pred CceeccCCCCceEEEEecCCCC--------cccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCc
Q 006229 472 PTLQHNGASSKSLLMFGSDGMG--------SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGF 543 (655)
Q Consensus 472 ~~~~~s~S~d~s~l~ws~dg~~--------~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~ 543 (655)
.++.++++-|-..++|...... +=.++...|...+.+|++|..++.|++|....+
T Consensus 76 ~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg----------------- 138 (399)
T KOG0296|consen 76 NNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTG----------------- 138 (399)
T ss_pred CceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccC-----------------
Confidence 3566777777777788765421 112233355666789999999999999965554
Q ss_pred eeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 006229 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623 (655)
Q Consensus 544 t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrV 623 (655)
.+...+...-+.|.-+.|||.+.+|+.|+.||.|..|.+.+......+.||...|++-+|.|+|++++++..||+|++
T Consensus 139 --~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~ 216 (399)
T KOG0296|consen 139 --GEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIV 216 (399)
T ss_pred --ceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEE
Confidence 233333344567888999999999999999999999999998888899999999999999999999999999999999
Q ss_pred EECCCCeEEEEEe
Q 006229 624 WDTENVRKLTFIC 636 (655)
Q Consensus 624 WDl~tg~~v~~l~ 636 (655)
||..++..++.+.
T Consensus 217 Wn~ktg~p~~~~~ 229 (399)
T KOG0296|consen 217 WNPKTGQPLHKIT 229 (399)
T ss_pred EecCCCceeEEec
Confidence 9999999888776
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.9e-11 Score=124.95 Aligned_cols=140 Identities=18% Similarity=0.298 Sum_probs=108.3
Q ss_pred ceeccCCCCceEEEEecCCCCccccc-------CcccCCC---CcEEEeccCCCcEEEEecCCCCCCCCccccccccCCC
Q 006229 473 TLQHNGASSKSLLMFGSDGMGSLTSA-------PNQLTDM---DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKG 542 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~~lass-------s~~l~~~---~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~ 542 (655)
....+++.|+++.+|+.........- +..+.++ ..+|++|..|-.|++++...+
T Consensus 115 GmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG---------------- 178 (397)
T KOG4283|consen 115 GMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG---------------- 178 (397)
T ss_pred ceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCC----------------
Confidence 56778889999999999763221110 1112222 257888888889999976666
Q ss_pred ceeeeEEeecCCCCCeeEEEEcCCCC-EEEEEeCCCcEEEEeCCCC-eEEEEe--------------cccCCCEEEEEEc
Q 006229 543 FTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESF-TVKSTL--------------EEHTQWITDVRFS 606 (655)
Q Consensus 543 ~t~~~v~~l~gH~~~V~sl~fSpdG~-lLaSgs~DgtVrIWDl~t~-~~l~tl--------------~gH~~~ItsVafs 606 (655)
..-.++.||.+.|.+|.|+|... .|+||+.|+.||+||++.. -|..++ ..|.+.|+.++|+
T Consensus 179 ---s~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~t 255 (397)
T KOG4283|consen 179 ---SFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWT 255 (397)
T ss_pred ---cceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeec
Confidence 45678899999999999999666 7899999999999999753 333333 2577889999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCeE
Q 006229 607 PSLSRLATSSADRTVRVWDTENVRK 631 (655)
Q Consensus 607 Pdg~~LaSgS~DgtVrVWDl~tg~~ 631 (655)
.++.++++++.|..+++|+..+|+.
T Consensus 256 Sd~~~l~~~gtd~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 256 SDARYLASCGTDDRIRVWNMESGRN 280 (397)
T ss_pred ccchhhhhccCccceEEeecccCcc
Confidence 9999999999999999999987753
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.30 E-value=4e-11 Score=123.77 Aligned_cols=122 Identities=16% Similarity=0.203 Sum_probs=104.0
Q ss_pred cCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeC--CCcE
Q 006229 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH--DKKA 579 (655)
Q Consensus 502 l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~--DgtV 579 (655)
+.+.+.++++++.|+++++|++.++ +.++++..++-.|-.++|-.....++.++. |.+|
T Consensus 22 fs~~G~~litss~dDsl~LYd~~~g-------------------~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 22 FSDDGLLLITSSEDDSLRLYDSLSG-------------------KQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTI 82 (311)
T ss_pred ecCCCCEEEEecCCCeEEEEEcCCC-------------------ceeeEeecccccccEEEEecCCceEEEccCCCCCce
Confidence 4444557888899999999988777 567777777788889999887776666665 9999
Q ss_pred EEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEeccccee
Q 006229 580 VLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIF 642 (655)
Q Consensus 580 rIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v 642 (655)
|+.++.+.+.++.|.||...|++|+.+|-+..++|+|.|++||+||+|..+|...+......+
T Consensus 83 ryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi 145 (311)
T KOG1446|consen 83 RYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI 145 (311)
T ss_pred EEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcc
Confidence 999999999999999999999999999999999999999999999999988887776555544
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.1e-12 Score=130.22 Aligned_cols=96 Identities=21% Similarity=0.346 Sum_probs=83.2
Q ss_pred ccccccccCCCceeeeEEeecCCCCCeeEEEEcCC-CCEEEEEeCCCcEEEEeCCCCeEEEEe---cccCCCEEEEEEcC
Q 006229 532 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTL---EEHTQWITDVRFSP 607 (655)
Q Consensus 532 ~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpd-G~lLaSgs~DgtVrIWDl~t~~~l~tl---~gH~~~ItsVafsP 607 (655)
.++++.++.++ .+...+.+|...|+.|.|+|+ ..+|++||.|.+||+||+.+..|+..| .||.+.|.+|.|++
T Consensus 115 GvIrVid~~~~---~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~ 191 (385)
T KOG1034|consen 115 GVIRVIDVVSG---QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSL 191 (385)
T ss_pred eEEEEEecchh---hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcC
Confidence 34444444443 577888999999999999995 569999999999999999999999887 58999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCe
Q 006229 608 SLSRLATSSADRTVRVWDTENVR 630 (655)
Q Consensus 608 dg~~LaSgS~DgtVrVWDl~tg~ 630 (655)
+|.+|+||+.|.+|++|++...+
T Consensus 192 ~gd~i~ScGmDhslk~W~l~~~~ 214 (385)
T KOG1034|consen 192 DGDRIASCGMDHSLKLWRLNVKE 214 (385)
T ss_pred CCCeeeccCCcceEEEEecChhH
Confidence 99999999999999999998543
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.3e-10 Score=120.12 Aligned_cols=157 Identities=22% Similarity=0.216 Sum_probs=112.4
Q ss_pred CCCceEEEEecCCCCcccccCcccCCCCcEEEeccCCCcEEEEecCCCC---------------CCCC---------ccc
Q 006229 479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDA---------------DPRD---------RVG 534 (655)
Q Consensus 479 S~d~s~l~ws~dg~~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~---------------d~~d---------~~~ 534 (655)
-..+++.-|.-... .+.+..+.+.++.+.++|.|++|++|+....+ |... ..+
T Consensus 88 ~dNkylRYF~GH~~---~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~I 164 (311)
T KOG1446|consen 88 HDNKYLRYFPGHKK---RVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELI 164 (311)
T ss_pred ecCceEEEcCCCCc---eEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeE
Confidence 34555555554333 23344556677778888888888888776443 1110 122
Q ss_pred cccccCCC--ceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCE---EEEEEcCCC
Q 006229 535 RSAEVGKG--FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWI---TDVRFSPSL 609 (655)
Q Consensus 535 ~l~d~~~~--~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~I---tsVafsPdg 609 (655)
++.|+... ..+..+..-..-...++.+.|||||++|+.+...+.+.+.|.-+|..+.++.+|...- .+.+|+||+
T Consensus 165 kLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds 244 (311)
T KOG1446|consen 165 KLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDS 244 (311)
T ss_pred EEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCC
Confidence 33333321 1111111111345678999999999999999999999999999999999999887654 578899999
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEEecc
Q 006229 610 SRLATSSADRTVRVWDTENVRKLTFICCY 638 (655)
Q Consensus 610 ~~LaSgS~DgtVrVWDl~tg~~v~~l~~~ 638 (655)
.++++|+.||+|.+|+++++..+..+.+.
T Consensus 245 ~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~ 273 (311)
T KOG1446|consen 245 KFVLSGSDDGTIHVWNLETGKKVAVLRGP 273 (311)
T ss_pred cEEEEecCCCcEEEEEcCCCcEeeEecCC
Confidence 99999999999999999999999998874
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.6e-11 Score=135.15 Aligned_cols=164 Identities=18% Similarity=0.252 Sum_probs=123.4
Q ss_pred ceeccCCCCceEEEEecCCCCcc-----------cccCcccCCCCc-EEEeccCCCcEEEEecCCCC-------------
Q 006229 473 TLQHNGASSKSLLMFGSDGMGSL-----------TSAPNQLTDMDR-FVDDGSLDDNVESFLSPDDA------------- 527 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~~l-----------asss~~l~~~~~-~LasGS~D~tV~vW~s~d~~------------- 527 (655)
..+.+++++++..+|...++.-+ +.....+...++ .+.+|+.|.+|.+|......
T Consensus 26 ~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC 105 (745)
T KOG0301|consen 26 VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVC 105 (745)
T ss_pred eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhcccccee
Confidence 35677888999999999663221 112133333333 37889999999998443322
Q ss_pred ------------CCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecc
Q 006229 528 ------------DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE 595 (655)
Q Consensus 528 ------------d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~g 595 (655)
...|.+.++|.... ++..+.+|...|.++.+-|+. .++|||.|++||+|.- ++++++|.|
T Consensus 106 ~ls~~~~~~~iSgSWD~TakvW~~~~-----l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~g 177 (745)
T KOG0301|consen 106 SLSIGEDGTLISGSWDSTAKVWRIGE-----LVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSG 177 (745)
T ss_pred eeecCCcCceEecccccceEEecchh-----hhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhhcc
Confidence 11233334443332 345588999999999999988 8899999999999985 789999999
Q ss_pred cCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeec
Q 006229 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTA 646 (655)
Q Consensus 596 H~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~ 646 (655)
|++.|+.|++-++ ..++||+.||.||+||+ +|+|+..+.+|...+.+..
T Consensus 178 HtD~VRgL~vl~~-~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis 226 (745)
T KOG0301|consen 178 HTDCVRGLAVLDD-SHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSIS 226 (745)
T ss_pred chhheeeeEEecC-CCeEeecCCceEEEEec-cCceeeeeeccceEEEEEE
Confidence 9999999999875 57899999999999999 7999999999988776554
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.8e-12 Score=135.27 Aligned_cols=116 Identities=21% Similarity=0.223 Sum_probs=94.8
Q ss_pred ccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEE
Q 006229 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV 580 (655)
Q Consensus 501 ~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVr 580 (655)
.+...++.|.+|+.-.+|.+|+..... .+....+....-.+.+++.+||.+++++++.||.|+
T Consensus 472 kL~pdgrtLivGGeastlsiWDLAapT-----------------prikaeltssapaCyALa~spDakvcFsccsdGnI~ 534 (705)
T KOG0639|consen 472 KLLPDGRTLIVGGEASTLSIWDLAAPT-----------------PRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIA 534 (705)
T ss_pred EecCCCceEEeccccceeeeeeccCCC-----------------cchhhhcCCcchhhhhhhcCCccceeeeeccCCcEE
Confidence 445566777777777777777554431 122223333445678899999999999999999999
Q ss_pred EEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE
Q 006229 581 LWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLT 633 (655)
Q Consensus 581 IWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~ 633 (655)
|||++.-..++.|.||++.+.||.+++||..|-||+-|.+||.||+++++.+.
T Consensus 535 vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlq 587 (705)
T KOG0639|consen 535 VWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQ 587 (705)
T ss_pred EEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999887654
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1e-11 Score=132.54 Aligned_cols=122 Identities=22% Similarity=0.283 Sum_probs=92.7
Q ss_pred CCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCce------eeeEEeecCCCCCeeEEEEcCC-CCEEEEEeCC
Q 006229 504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFT------FTEFQLIPASTSKVESCHFSPD-GKLLATGGHD 576 (655)
Q Consensus 504 ~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t------~~~v~~l~gH~~~V~sl~fSpd-G~lLaSgs~D 576 (655)
..+.|+|.|++|..|.+|+..- .+.+..+.-+..... .+.-..-.+|++.|.++.|+.. .+.|||||.|
T Consensus 190 ~~gNyvAiGtmdp~IeIWDLDI----~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD 265 (463)
T KOG0270|consen 190 GAGNYVAIGTMDPEIEIWDLDI----VDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSAD 265 (463)
T ss_pred CCcceEEEeccCceeEEecccc----ccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCC
Confidence 3447999999999999994321 112221111111100 0111223479999999999884 4499999999
Q ss_pred CcEEEEeCCCCeEEEEecccCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC
Q 006229 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENV 629 (655)
Q Consensus 577 gtVrIWDl~t~~~l~tl~gH~~~ItsVafsP-dg~~LaSgS~DgtVrVWDl~tg 629 (655)
+||++||+.++++..++..|...|.++.|+| ...+|++||.|++|+|.|.|..
T Consensus 266 ~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~ 319 (463)
T KOG0270|consen 266 KTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDP 319 (463)
T ss_pred ceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCc
Confidence 9999999999999999999999999999999 4678999999999999999953
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.2e-11 Score=136.17 Aligned_cols=103 Identities=21% Similarity=0.285 Sum_probs=91.2
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE
Q 006229 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKL 632 (655)
Q Consensus 553 gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v 632 (655)
..+-++.+|+|+.+|+++|.||.|-.|+|-++.+.....++++|+..|.+|.|+|.+.+||+.+.||.|+|||+.++.+.
T Consensus 94 Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~ 173 (933)
T KOG1274|consen 94 RFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILS 173 (933)
T ss_pred eeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhh
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred EEEecccc--eee-eeceeeEEEecC
Q 006229 633 TFICCYKC--IFV-STAIGSCFFAPT 655 (655)
Q Consensus 633 ~~l~~~~~--~v~-s~~Vss~~F~P~ 655 (655)
.++..... .+. ...++..+|||+
T Consensus 174 ~tl~~v~k~n~~~~s~i~~~~aW~Pk 199 (933)
T KOG1274|consen 174 KTLTGVDKDNEFILSRICTRLAWHPK 199 (933)
T ss_pred hhcccCCccccccccceeeeeeecCC
Confidence 88765432 222 455778999995
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.4e-11 Score=121.04 Aligned_cols=118 Identities=23% Similarity=0.319 Sum_probs=96.3
Q ss_pred ccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcC--CCCEEEEEeCCCc
Q 006229 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKK 578 (655)
Q Consensus 501 ~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSp--dG~lLaSgs~Dgt 578 (655)
.++.+++.+++||.|.+|++|++.++ ..++.+-...+.|.+.|..|.|.+ -|..+|+++.|++
T Consensus 20 s~D~~GRRmAtCSsDq~vkI~d~~~~---------------s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drt 84 (361)
T KOG2445|consen 20 SFDFYGRRMATCSSDQTVKIWDSTSD---------------SGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRT 84 (361)
T ss_pred eecccCceeeeccCCCcEEEEeccCC---------------CCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCc
Confidence 34556678999999999999976444 235677788899999999999977 6889999999999
Q ss_pred EEEEeC---------CCCeEEEEecccCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCeEEE
Q 006229 579 AVLWCT---------ESFTVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWDTENVRKLT 633 (655)
Q Consensus 579 VrIWDl---------~t~~~l~tl~gH~~~ItsVafsP--dg~~LaSgS~DgtVrVWDl~tg~~v~ 633 (655)
|+||.- +......++..-...|++|+|.| -|-.||+++.||+||||++-+...+.
T Consensus 85 v~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs 150 (361)
T KOG2445|consen 85 VSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLS 150 (361)
T ss_pred eeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccc
Confidence 999975 12345667778889999999999 47789999999999999887654443
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.9e-10 Score=118.23 Aligned_cols=162 Identities=20% Similarity=0.227 Sum_probs=121.8
Q ss_pred ceeccCCCCceEEEEecCCCCccccc----------CcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCC
Q 006229 473 TLQHNGASSKSLLMFGSDGMGSLTSA----------PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKG 542 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~~lass----------s~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~ 542 (655)
.++..+|.|.++.+|.....+.++.. ...+.+.+..+++|+.|+.+++|+..++
T Consensus 41 ~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~---------------- 104 (347)
T KOG0647|consen 41 NLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG---------------- 104 (347)
T ss_pred ceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC----------------
Confidence 56778899999999998775433321 1133555577888889999999966554
Q ss_pred ceeeeEEeecCCCCCeeEEEEcCCCC--EEEEEeCCCcEEEEeCCCCeEEEEec--------------------------
Q 006229 543 FTFTEFQLIPASTSKVESCHFSPDGK--LLATGGHDKKAVLWCTESFTVKSTLE-------------------------- 594 (655)
Q Consensus 543 ~t~~~v~~l~gH~~~V~sl~fSpdG~--lLaSgs~DgtVrIWDl~t~~~l~tl~-------------------------- 594 (655)
-+..+..|.++|.+|+|-+... .|+|||+|++||+||++....+.++.
T Consensus 105 ----Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~v 180 (347)
T KOG0647|consen 105 ----QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAV 180 (347)
T ss_pred ----CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEE
Confidence 3456678999999999998665 89999999999999998643332221
Q ss_pred -----------ccC----CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC--eEEEEEeccccee----eeeceeeEEEe
Q 006229 595 -----------EHT----QWITDVRFSPSLSRLATSSADRTVRVWDTENV--RKLTFICCYKCIF----VSTAIGSCFFA 653 (655)
Q Consensus 595 -----------gH~----~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg--~~v~~l~~~~~~v----~s~~Vss~~F~ 653 (655)
.+. --+.||+...|....+.||-.|.|-|-.+..+ +.-.+|.||+... ..-+|++++||
T Consensus 181 ynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~Fh 260 (347)
T KOG0647|consen 181 YNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFH 260 (347)
T ss_pred EEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEee
Confidence 122 23788999998888899999999999999876 6667899998522 23458899999
Q ss_pred c
Q 006229 654 P 654 (655)
Q Consensus 654 P 654 (655)
|
T Consensus 261 P 261 (347)
T KOG0647|consen 261 P 261 (347)
T ss_pred c
Confidence 8
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.6e-11 Score=132.73 Aligned_cols=120 Identities=18% Similarity=0.221 Sum_probs=100.6
Q ss_pred ccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEE
Q 006229 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV 580 (655)
Q Consensus 501 ~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVr 580 (655)
.+.+.+..|++++.|+++++|+.... .......++.+-++++|.++|.|+++.+.+..+++|+.|++|+
T Consensus 301 ~~~~sep~lit~sed~~lk~WnLqk~-----------~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~ 369 (577)
T KOG0642|consen 301 AFHPSEPVLITASEDGTLKLWNLQKA-----------KKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIR 369 (577)
T ss_pred hcCCCCCeEEEeccccchhhhhhccc-----------CCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceee
Confidence 56777788999999999999976331 1223445678899999999999999999999999999999999
Q ss_pred EEeCC------C----CeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE
Q 006229 581 LWCTE------S----FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRK 631 (655)
Q Consensus 581 IWDl~------t----~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~ 631 (655)
.|++. + .....++.||++.|+.+++++...+|++||.|||||+|+......
T Consensus 370 ~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~ 430 (577)
T KOG0642|consen 370 CWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP 430 (577)
T ss_pred eeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc
Confidence 99543 1 134567889999999999999999999999999999999876554
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.25 E-value=4e-11 Score=120.17 Aligned_cols=133 Identities=20% Similarity=0.240 Sum_probs=104.9
Q ss_pred ccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcC--CCCEEEEEeCCCc
Q 006229 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKK 578 (655)
Q Consensus 501 ~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSp--dG~lLaSgs~Dgt 578 (655)
.++-.+..|+++|.|++|++|...... ....+.++.||.++|..++|.. -|.+||++++||+
T Consensus 18 ~lDyygkrlATcsSD~tVkIf~v~~n~----------------~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgk 81 (299)
T KOG1332|consen 18 QLDYYGKRLATCSSDGTVKIFEVRNNG----------------QSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGK 81 (299)
T ss_pred hhhhhcceeeeecCCccEEEEEEcCCC----------------CceeeeEecCCCCCeeEEeecccccCcEeeEeecCce
Confidence 345555789999999999999554431 1357788999999999999976 8999999999999
Q ss_pred EEEEeCCCCe--EEEEecccCCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCC--eE-EEEEecccceeeeeceeeEE
Q 006229 579 AVLWCTESFT--VKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENV--RK-LTFICCYKCIFVSTAIGSCF 651 (655)
Q Consensus 579 VrIWDl~t~~--~l~tl~gH~~~ItsVafsPd--g~~LaSgS~DgtVrVWDl~tg--~~-v~~l~~~~~~v~s~~Vss~~ 651 (655)
|.||....++ ....+..|...|++|+|.|. |-.||++|.||.|.|.+.++- -+ .....+|. .-|++++
T Consensus 82 VIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~-----~GvnsVs 156 (299)
T KOG1332|consen 82 VIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHE-----IGVNSVS 156 (299)
T ss_pred EEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccc-----cccceee
Confidence 9999988774 44566789999999999995 568999999999999998753 22 23344443 3456788
Q ss_pred Eec
Q 006229 652 FAP 654 (655)
Q Consensus 652 F~P 654 (655)
|.|
T Consensus 157 wap 159 (299)
T KOG1332|consen 157 WAP 159 (299)
T ss_pred ecC
Confidence 887
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.9e-12 Score=136.98 Aligned_cols=119 Identities=24% Similarity=0.350 Sum_probs=104.3
Q ss_pred CCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 006229 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (655)
Q Consensus 505 ~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl 584 (655)
....+++|+.|..|++|.....+ ...+.++.+..+.|++++|.++++.++++++|+.+++|++
T Consensus 186 ~sdtlatgg~Dr~Ik~W~v~~~k-----------------~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnv 248 (459)
T KOG0288|consen 186 NSDTLATGGSDRIIKLWNVLGEK-----------------SELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNV 248 (459)
T ss_pred Ccchhhhcchhhhhhhhhcccch-----------------hhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeec
Confidence 33578999999999999554431 2456778889999999999999999999999999999999
Q ss_pred CCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccc
Q 006229 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKC 640 (655)
Q Consensus 585 ~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~ 640 (655)
...+..++|.||++.|+++.|.-....+++|+.|.+||+||+....|.+++...+.
T Consensus 249 d~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~ 304 (459)
T KOG0288|consen 249 DSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQ 304 (459)
T ss_pred cchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccccccc
Confidence 99999999999999999999998777799999999999999999999887655443
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.3e-11 Score=122.26 Aligned_cols=133 Identities=18% Similarity=0.243 Sum_probs=106.5
Q ss_pred EEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCe
Q 006229 509 VDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT 588 (655)
Q Consensus 509 LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~ 588 (655)
++.|++...|--|...-..+ -.......++..+..+.+|.+.|+||+++ |.++||||.|-+|+|||+.+..
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~-------~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~ 74 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPK-------GCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRK 74 (362)
T ss_pred EEEeeeeeEEEEEEeccCcc-------ccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchh
Confidence 45677766665552221110 11112234556778889999999999996 9999999999999999999999
Q ss_pred EEEEecccCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 589 VKSTLEEHTQWITDVRFSPSLS--RLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 589 ~l~tl~gH~~~ItsVafsPdg~--~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
.+..+..|.+.|+++.|.+.-. .|+||+.||.|.+|++....++.++..|... |+.++.||+
T Consensus 75 qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~-----Vt~lsiHPS 138 (362)
T KOG0294|consen 75 QLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQ-----VTDLSIHPS 138 (362)
T ss_pred hhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccc-----cceeEecCC
Confidence 9999999999999999999765 8999999999999999999999999998765 456777875
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.1e-10 Score=117.02 Aligned_cols=130 Identities=20% Similarity=0.265 Sum_probs=100.2
Q ss_pred CCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 006229 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (655)
Q Consensus 503 ~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIW 582 (655)
..++++|.+|+ |+.|+-|.+++.... ..+-++|+........ ...--.|+++-..|...-++.++.|+.+.-|
T Consensus 69 ~f~d~~Lls~g-dG~V~gw~W~E~~es-~~~K~lwe~~~P~~~~-----~~evPeINam~ldP~enSi~~AgGD~~~y~~ 141 (325)
T KOG0649|consen 69 AFHDDFLLSGG-DGLVYGWEWNEEEES-LATKRLWEVKIPMQVD-----AVEVPEINAMWLDPSENSILFAGGDGVIYQV 141 (325)
T ss_pred eeehhheeecc-CceEEEeeehhhhhh-ccchhhhhhcCccccC-----cccCCccceeEeccCCCcEEEecCCeEEEEE
Confidence 34457788875 599999977665321 2333555544332111 0112458899999977777777799999999
Q ss_pred eCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEeccc
Q 006229 583 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYK 639 (655)
Q Consensus 583 Dl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~ 639 (655)
|+++|+..++++||++.|.+|.-......|+||++||+|||||.++++++..+..-.
T Consensus 142 dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk 198 (325)
T KOG0649|consen 142 DLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYK 198 (325)
T ss_pred EecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEecccc
Confidence 999999999999999999999987778899999999999999999999999886543
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.7e-10 Score=123.12 Aligned_cols=131 Identities=17% Similarity=0.209 Sum_probs=105.2
Q ss_pred cccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeC
Q 006229 496 TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH 575 (655)
Q Consensus 496 asss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~ 575 (655)
..++..|++.+-++.+|..|+.|++|+.... ..+..|.+|+++|..|.|+-+|-||++++.
T Consensus 349 ~~ts~~fHpDgLifgtgt~d~~vkiwdlks~-------------------~~~a~Fpght~~vk~i~FsENGY~Lat~ad 409 (506)
T KOG0289|consen 349 EYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQ-------------------TNVAKFPGHTGPVKAISFSENGYWLATAAD 409 (506)
T ss_pred eeEEeeEcCCceEEeccCCCceEEEEEcCCc-------------------cccccCCCCCCceeEEEeccCceEEEEEec
Confidence 3445577888888999999999999966554 467788999999999999999999999999
Q ss_pred CCcEEEEeCCCCeEEEEecc-cCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC--CCeEEEEEecccceeeee
Q 006229 576 DKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWDTE--NVRKLTFICCYKCIFVST 645 (655)
Q Consensus 576 DgtVrIWDl~t~~~l~tl~g-H~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~--tg~~v~~l~~~~~~v~s~ 645 (655)
|+.|++||++..+...++.- ....|.+++|++.|.+|+.++.|=.|++++-. +..++..+..|.....++
T Consensus 410 d~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v 482 (506)
T KOG0289|consen 410 DGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGV 482 (506)
T ss_pred CCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhccccccee
Confidence 99999999998887777752 33479999999999999999998888888743 456666665555433333
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.8e-11 Score=126.19 Aligned_cols=118 Identities=25% Similarity=0.389 Sum_probs=100.3
Q ss_pred CCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 006229 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (655)
Q Consensus 503 ~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIW 582 (655)
.+.+.||+.|..-+++.+|...+| ..+..+.+|-..|+|+.|+-||.+|+|||.||.|.+|
T Consensus 90 ~n~G~~l~ag~i~g~lYlWelssG-------------------~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW 150 (476)
T KOG0646|consen 90 SNLGYFLLAGTISGNLYLWELSSG-------------------ILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVW 150 (476)
T ss_pred CCCceEEEeecccCcEEEEEeccc-------------------cHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEE
Confidence 455678888878899999976665 4556678999999999999999999999999999999
Q ss_pred eCC---------CCeEEEEecccCCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCeEEEEEeccc
Q 006229 583 CTE---------SFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENVRKLTFICCYK 639 (655)
Q Consensus 583 Dl~---------t~~~l~tl~gH~~~ItsVafsPd--g~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~ 639 (655)
++. +-+.++.|.+|+-.|+++...+. ..+|+|+|.|.+|||||+..+..+.++.-..
T Consensus 151 ~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~ 218 (476)
T KOG0646|consen 151 LLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPS 218 (476)
T ss_pred EEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCC
Confidence 762 45788999999999999998875 4689999999999999999998887765443
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.7e-11 Score=121.62 Aligned_cols=104 Identities=22% Similarity=0.297 Sum_probs=85.5
Q ss_pred CccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-EEEEecccCCCEEEEEEcCCC
Q 006229 531 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTLEEHTQWITDVRFSPSL 609 (655)
Q Consensus 531 d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~-~l~tl~gH~~~ItsVafsPdg 609 (655)
|...++|+.-++ .++..+ .|..-|.+|+|+.|.++|+||+.++.+||||+...+ ....+.+|++.|..+-|+...
T Consensus 80 dftakvw~a~tg---delhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD 155 (334)
T KOG0278|consen 80 DFTAKVWDAVTG---DELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHED 155 (334)
T ss_pred cchhhhhhhhhh---hhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccC
Confidence 444455555544 333333 477789999999999999999999999999997543 566888999999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEEecc
Q 006229 610 SRLATSSADRTVRVWDTENVRKLTFICCY 638 (655)
Q Consensus 610 ~~LaSgS~DgtVrVWDl~tg~~v~~l~~~ 638 (655)
..|+|++.|++||+||.+++..+.++.-.
T Consensus 156 ~~iLSSadd~tVRLWD~rTgt~v~sL~~~ 184 (334)
T KOG0278|consen 156 KCILSSADDKTVRLWDHRTGTEVQSLEFN 184 (334)
T ss_pred ceEEeeccCCceEEEEeccCcEEEEEecC
Confidence 99999999999999999999999887543
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.7e-10 Score=119.04 Aligned_cols=121 Identities=17% Similarity=0.197 Sum_probs=95.1
Q ss_pred cccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcE
Q 006229 500 NQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKA 579 (655)
Q Consensus 500 ~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtV 579 (655)
..|...+.+||.|+.||.|.+|+.. ++..-+.+.+|..+|+|++||+||+.|+|+|.|-.|
T Consensus 29 ~~Fs~~G~~lAvGc~nG~vvI~D~~-------------------T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si 89 (405)
T KOG1273|consen 29 CQFSRWGDYLAVGCANGRVVIYDFD-------------------TFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSI 89 (405)
T ss_pred EEeccCcceeeeeccCCcEEEEEcc-------------------ccchhhhhhccccceeEEEecCCCCEeeeecCCcee
Confidence 3455566799999999999999432 234556778999999999999999999999999999
Q ss_pred EEEeCCCCeEEEEec---------ccCCC-------------------------------------EEEEEEcCCCCEEE
Q 006229 580 VLWCTESFTVKSTLE---------EHTQW-------------------------------------ITDVRFSPSLSRLA 613 (655)
Q Consensus 580 rIWDl~t~~~l~tl~---------gH~~~-------------------------------------ItsVafsPdg~~La 613 (655)
++||+..|.++..++ -|... -.+..|++.|++|+
T Consensus 90 ~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIi 169 (405)
T KOG1273|consen 90 KLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYII 169 (405)
T ss_pred EEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEE
Confidence 999998886655443 01100 11223667799999
Q ss_pred EEeCCCcEEEEECCCCeEEEEEeccc
Q 006229 614 TSSADRTVRVWDTENVRKLTFICCYK 639 (655)
Q Consensus 614 SgS~DgtVrVWDl~tg~~v~~l~~~~ 639 (655)
+|...|.+.|+|..+.+|+..++-..
T Consensus 170 tGtsKGkllv~~a~t~e~vas~rits 195 (405)
T KOG1273|consen 170 TGTSKGKLLVYDAETLECVASFRITS 195 (405)
T ss_pred EecCcceEEEEecchheeeeeeeech
Confidence 99999999999999999998876554
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.9e-10 Score=126.86 Aligned_cols=88 Identities=20% Similarity=0.169 Sum_probs=77.8
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec---ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 006229 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE---EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTF 634 (655)
Q Consensus 558 V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~---gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~ 634 (655)
++++++.|..+++++++.|+.|||||+.+++.+++|+ +|++....|..+|.|.||||.+.|+++.++|..+++|+..
T Consensus 599 lYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~ 678 (1080)
T KOG1408|consen 599 LYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQ 678 (1080)
T ss_pred EEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhh
Confidence 4455555677889999999999999999999999997 4778888999999999999999999999999999999999
Q ss_pred Eecccceeeee
Q 006229 635 ICCYKCIFVST 645 (655)
Q Consensus 635 l~~~~~~v~s~ 645 (655)
+.+|...+..+
T Consensus 679 m~GHsE~VTG~ 689 (1080)
T KOG1408|consen 679 MTGHSEAVTGV 689 (1080)
T ss_pred hcCcchheeee
Confidence 99998876533
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.1e-10 Score=118.57 Aligned_cols=168 Identities=15% Similarity=0.128 Sum_probs=120.7
Q ss_pred CceeccCCCCceEEEEecCCCCccc-------ccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCce
Q 006229 472 PTLQHNGASSKSLLMFGSDGMGSLT-------SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFT 544 (655)
Q Consensus 472 ~~~~~s~S~d~s~l~ws~dg~~~la-------sss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t 544 (655)
..++.+++.+..+++|+..|...-. ....++.+.++||+++++.-.|++|...-++++ +...
T Consensus 199 ~k~imsas~dt~i~lw~lkGq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG-----------~fqe 267 (420)
T KOG2096|consen 199 AKYIMSASLDTKICLWDLKGQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDG-----------TFQE 267 (420)
T ss_pred ceEEEEecCCCcEEEEecCCceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCc-----------chhh
Confidence 3678888999999999998732111 112266889999999999999999954333221 1112
Q ss_pred eeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC-------eEEEEe----cccCCCEEEEEEcCCCCEEE
Q 006229 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-------TVKSTL----EEHTQWITDVRFSPSLSRLA 613 (655)
Q Consensus 545 ~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~-------~~l~tl----~gH~~~ItsVafsPdg~~La 613 (655)
...+..++||.+.|..++||++...++|.+.||++||||++-. +.+++. ..-.+.-..+.++|+|..||
T Consensus 268 v~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA 347 (420)
T KOG2096|consen 268 VKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLA 347 (420)
T ss_pred hhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEE
Confidence 2345678999999999999999999999999999999998531 222222 11222334799999999887
Q ss_pred EEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 614 TSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 614 SgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
.+. ..+++++..++|+..-++. .++..+|.++.|+|+
T Consensus 348 ~s~-gs~l~~~~se~g~~~~~~e----~~h~~~Is~is~~~~ 384 (420)
T KOG2096|consen 348 VSF-GSDLKVFASEDGKDYPELE----DIHSTTISSISYSSD 384 (420)
T ss_pred eec-CCceEEEEcccCccchhHH----HhhcCceeeEEecCC
Confidence 654 4589999999887665443 235567788888875
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.1e-10 Score=125.33 Aligned_cols=153 Identities=18% Similarity=0.199 Sum_probs=100.3
Q ss_pred ceeccCCCCceEEEEecCC-----CCccc-------ccCcccCCC-CcEEEeccCCCcEEEEecCCCC------------
Q 006229 473 TLQHNGASSKSLLMFGSDG-----MGSLT-------SAPNQLTDM-DRFVDDGSLDDNVESFLSPDDA------------ 527 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg-----~~~la-------sss~~l~~~-~~~LasGS~D~tV~vW~s~d~~------------ 527 (655)
++.+++...+.+..|+.++ .+.+. ++...|.+. ...|.+.|.||+|++-+....-
T Consensus 201 ~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~ 280 (498)
T KOG4328|consen 201 KLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNI 280 (498)
T ss_pred eEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccce
Confidence 4556666667777777742 11111 112222222 2457788899999875432221
Q ss_pred ----------CC------CCccccccccCCCceeeeEEeecCCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeEE
Q 006229 528 ----------DP------RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVK 590 (655)
Q Consensus 528 ----------d~------~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSp-dG~lLaSgs~DgtVrIWDl~t~~~l 590 (655)
+. ....+.+||..... .+...++-|..+|++|+++| ...+|||||.|++++|||++.....
T Consensus 281 ~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~--s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K 358 (498)
T KOG4328|consen 281 WFSSLDFSAESRSVLFGDNVGNFNVIDLRTDG--SEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGK 358 (498)
T ss_pred eeeeccccCCCccEEEeecccceEEEEeecCC--ccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCC
Confidence 00 01122334433321 22334556888999999999 5558999999999999999864322
Q ss_pred ----EEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 006229 591 ----STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (655)
Q Consensus 591 ----~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~ 627 (655)
-....|...|.+++|||++-.|+|-|.|..|||||..
T Consensus 359 ~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 359 ASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred CCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 2334699999999999998889999999999999984
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.15 E-value=7e-11 Score=123.71 Aligned_cols=87 Identities=24% Similarity=0.376 Sum_probs=73.9
Q ss_pred eeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccC---CCEEEEEEcCCCCEEEEEeCCCcEE
Q 006229 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT---QWITDVRFSPSLSRLATSSADRTVR 622 (655)
Q Consensus 546 ~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~---~~ItsVafsPdg~~LaSgS~DgtVr 622 (655)
..+..+.+|.++|.+|+|||.|.-|++||.|++||||.++.+....++ |+ ..|.||.|+-|..+|+|||.|+.||
T Consensus 263 ~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiY--htkRMq~V~~Vk~S~Dskyi~SGSdd~nvR 340 (433)
T KOG0268|consen 263 RPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIY--HTKRMQHVFCVKYSMDSKYIISGSDDGNVR 340 (433)
T ss_pred ccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhh--hHhhhheeeEEEEeccccEEEecCCCccee
Confidence 356677899999999999999999999999999999999887655443 33 3599999999999999999999999
Q ss_pred EEECCCCeEEEE
Q 006229 623 VWDTENVRKLTF 634 (655)
Q Consensus 623 VWDl~tg~~v~~ 634 (655)
||.....+.+..
T Consensus 341 lWka~Aseklgv 352 (433)
T KOG0268|consen 341 LWKAKASEKLGV 352 (433)
T ss_pred eeecchhhhcCC
Confidence 998875554433
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.3e-10 Score=119.71 Aligned_cols=159 Identities=16% Similarity=0.158 Sum_probs=118.1
Q ss_pred CCCceeccCCCCceEEEEecCCCCc------cc---cc------------------Cccc---CCCCcEEEeccCCCcEE
Q 006229 470 SRPTLQHNGASSKSLLMFGSDGMGS------LT---SA------------------PNQL---TDMDRFVDDGSLDDNVE 519 (655)
Q Consensus 470 s~~~~~~s~S~d~s~l~ws~dg~~~------la---ss------------------s~~l---~~~~~~LasGS~D~tV~ 519 (655)
..+++.+.+..+..+.+|+++-... +. +. ...+ ......|++||.|.+|+
T Consensus 190 ~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~ 269 (463)
T KOG0270|consen 190 GAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVK 269 (463)
T ss_pred CCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEE
Confidence 3456778888888999998874110 00 00 0001 22225689999999999
Q ss_pred EEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCC
Q 006229 520 SFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ 598 (655)
Q Consensus 520 vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSp-dG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~ 598 (655)
+|+...+ ++..++..|...|.++.|+| ...+|++|+.|++|++.|++........-.-.+
T Consensus 270 lWD~~~g-------------------~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g 330 (463)
T KOG0270|consen 270 LWDVDTG-------------------KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDG 330 (463)
T ss_pred EEEcCCC-------------------CcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEecc
Confidence 9977665 57778888999999999999 677999999999999999985322222222567
Q ss_pred CEEEEEEcCCCC-EEEEEeCCCcEEEEECCCC-eEEEEEecccceeeeece
Q 006229 599 WITDVRFSPSLS-RLATSSADRTVRVWDTENV-RKLTFICCYKCIFVSTAI 647 (655)
Q Consensus 599 ~ItsVafsPdg~-~LaSgS~DgtVrVWDl~tg-~~v~~l~~~~~~v~s~~V 647 (655)
.|-.|+|.|... .++++..||+|+-+|+|+. +++.++..|...+.+.++
T Consensus 331 ~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~ 381 (463)
T KOG0270|consen 331 EVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSV 381 (463)
T ss_pred ceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEe
Confidence 899999999765 5667778999999999975 899999999886655543
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.5e-10 Score=129.15 Aligned_cols=107 Identities=26% Similarity=0.455 Sum_probs=85.9
Q ss_pred eeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC----eEEEEecccCCCEEEEEEcCCCCEEEEEeCCCc
Q 006229 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF----TVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620 (655)
Q Consensus 545 ~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~----~~l~tl~gH~~~ItsVafsPdg~~LaSgS~Dgt 620 (655)
+..+..+.+|.-.|+.++|||||++|++.|.|+++.+|..... ......+.|+..|+++.|+|++.++||+|.|++
T Consensus 562 W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~ 641 (764)
T KOG1063|consen 562 WLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKK 641 (764)
T ss_pred hhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCce
Confidence 4566788999999999999999999999999999999976322 123346789999999999999999999999999
Q ss_pred EEEEECCCC--eEEEEEecccceeeeeceeeEEEec
Q 006229 621 VRVWDTENV--RKLTFICCYKCIFVSTAIGSCFFAP 654 (655)
Q Consensus 621 VrVWDl~tg--~~v~~l~~~~~~v~s~~Vss~~F~P 654 (655)
|+||...+. +++..+ ...-+..+|+.++|+|
T Consensus 642 VkVW~~~~~~d~~i~~~---a~~~~~~aVTAv~~~~ 674 (764)
T KOG1063|consen 642 VKVWEEPDLRDKYISRF---ACLKFSLAVTAVAYLP 674 (764)
T ss_pred EEEEeccCchhhhhhhh---chhccCCceeeEEeec
Confidence 999999877 555443 2233445566666665
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.3e-10 Score=122.45 Aligned_cols=151 Identities=16% Similarity=0.161 Sum_probs=118.6
Q ss_pred CCCCceeccCCCCceEEEEecCCCCc-----cc-----ccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccc
Q 006229 469 ISRPTLQHNGASSKSLLMFGSDGMGS-----LT-----SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAE 538 (655)
Q Consensus 469 ~s~~~~~~s~S~d~s~l~ws~dg~~~-----la-----sss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d 538 (655)
.++...+.+++...++-+|+....+. +. .-..++.+...+..+++.|++|.+|+.++.
T Consensus 474 ~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq------------ 541 (705)
T KOG0639|consen 474 LPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ------------ 541 (705)
T ss_pred cCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc------------
Confidence 45566666777788888998876321 11 112245666678888889999999977665
Q ss_pred cCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE-----------------------------
Q 006229 539 VGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV----------------------------- 589 (655)
Q Consensus 539 ~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~----------------------------- 589 (655)
..|+.|+||++.+.||++++||..|.||+-|.+||.||+++++.
T Consensus 542 -------~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens 614 (705)
T KOG0639|consen 542 -------TLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENS 614 (705)
T ss_pred -------eeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccC
Confidence 57899999999999999999999999999999999999875421
Q ss_pred -----------EEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecc
Q 006229 590 -----------KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCY 638 (655)
Q Consensus 590 -----------l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~ 638 (655)
...+.-|+.-|.+|.|.+.|++++|.+.|..+..|..--|..+......
T Consensus 615 ~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~ 674 (705)
T KOG0639|consen 615 NVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES 674 (705)
T ss_pred cEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecccc
Confidence 1223347888999999999999999999999999988877776555443
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.7e-10 Score=118.37 Aligned_cols=129 Identities=21% Similarity=0.276 Sum_probs=101.8
Q ss_pred CCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 006229 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (655)
Q Consensus 503 ~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIW 582 (655)
...+..+++|..|+++|+|.+++. ..+..+..|...|.+++|+|||++|++-+.| ..+||
T Consensus 153 ~~~gs~latgg~dg~lRv~~~Ps~-------------------~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW 212 (398)
T KOG0771|consen 153 NGDGSKLATGGTDGTLRVWEWPSM-------------------LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVW 212 (398)
T ss_pred cCCCCEeeeccccceEEEEecCcc-------------------hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEE
Confidence 334458899999999999976654 3445556788999999999999999999999 99999
Q ss_pred eCCCCeEEEEec-----------------------------------------cc-------------CCCEEEEEEcCC
Q 006229 583 CTESFTVKSTLE-----------------------------------------EH-------------TQWITDVRFSPS 608 (655)
Q Consensus 583 Dl~t~~~l~tl~-----------------------------------------gH-------------~~~ItsVafsPd 608 (655)
+++++.++.... .| ...|++++.+++
T Consensus 213 ~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~d 292 (398)
T KOG0771|consen 213 SVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDD 292 (398)
T ss_pred EeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCC
Confidence 998761111000 01 236899999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 609 LSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 609 g~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
|+++|.|+.||.|-|+++.+.+++..+..- +...|..+.|+|+
T Consensus 293 Gkf~AlGT~dGsVai~~~~~lq~~~~vk~a----H~~~VT~ltF~Pd 335 (398)
T KOG0771|consen 293 GKFLALGTMDGSVAIYDAKSLQRLQYVKEA----HLGFVTGLTFSPD 335 (398)
T ss_pred CcEEEEeccCCcEEEEEeceeeeeEeehhh----heeeeeeEEEcCC
Confidence 999999999999999999998888766432 4456789999996
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.7e-10 Score=116.36 Aligned_cols=110 Identities=17% Similarity=0.233 Sum_probs=88.2
Q ss_pred cEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 006229 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (655)
Q Consensus 507 ~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t 586 (655)
..|..+|||+++++++.... ..+..-.|..+|.+|+|.+ ...+++|+.|+.||++|+.+
T Consensus 26 ~~LLvssWDgslrlYdv~~~--------------------~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~ 84 (323)
T KOG1036|consen 26 SDLLVSSWDGSLRLYDVPAN--------------------SLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNT 84 (323)
T ss_pred CcEEEEeccCcEEEEeccch--------------------hhhhheecCCceeeeeccC-CceEEEeccCceEEEEEecC
Confidence 46667779999999954332 2222335889999999986 56789999999999999998
Q ss_pred CeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecc
Q 006229 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCY 638 (655)
Q Consensus 587 ~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~ 638 (655)
+... .+-.|...|.||.+++....++|||.|++|++||.++..++.++...
T Consensus 85 ~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~ 135 (323)
T KOG1036|consen 85 GNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQG 135 (323)
T ss_pred Ccce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccC
Confidence 8766 45569999999999998899999999999999999965555444433
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.1e-09 Score=108.90 Aligned_cols=110 Identities=18% Similarity=0.142 Sum_probs=85.7
Q ss_pred cEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEE-EEEeCCCcEEEEeCC
Q 006229 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLL-ATGGHDKKAVLWCTE 585 (655)
Q Consensus 507 ~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lL-aSgs~DgtVrIWDl~ 585 (655)
+.+++++.|+.|++|+..++ +.+..+..+. .+.+++|+|+++.+ ++++.|+.|++||+.
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~-------------------~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~ 61 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATL-------------------EVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLA 61 (300)
T ss_pred cEEEEecCCCEEEEEECCCC-------------------ceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECC
Confidence 46788889999999965433 2344455443 46789999999966 667789999999999
Q ss_pred CCeEEEEecccCCCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeEEEEEec
Q 006229 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENVRKLTFICC 637 (655)
Q Consensus 586 t~~~l~tl~gH~~~ItsVafsPdg~~LaSg-S~DgtVrVWDl~tg~~v~~l~~ 637 (655)
+++.+..+..|.. +..++|+|+++.++++ +.|+.|++||+++++++..+..
T Consensus 62 ~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~ 113 (300)
T TIGR03866 62 TGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV 113 (300)
T ss_pred CCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC
Confidence 9988887765544 5678999999977654 5689999999999888877754
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.3e-10 Score=122.86 Aligned_cols=153 Identities=18% Similarity=0.202 Sum_probs=110.2
Q ss_pred ceeccCCCCceEEEEecCCCCccc---------ccCcccCCCCcEEEeccCCCcEEEEecCCCC----------------
Q 006229 473 TLQHNGASSKSLLMFGSDGMGSLT---------SAPNQLTDMDRFVDDGSLDDNVESFLSPDDA---------------- 527 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~~la---------sss~~l~~~~~~LasGS~D~tV~vW~s~d~~---------------- 527 (655)
..+.+++.+..++.++..-...++ +....+.....++|+|+.|..|.+|+..+..
T Consensus 271 ~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~a 350 (484)
T KOG0305|consen 271 SVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALA 350 (484)
T ss_pred ceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEee
Confidence 344555555566555554321111 1112334455678888888888888663322
Q ss_pred -------------CCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEe--CCCcEEEEeCCCCeEEEE
Q 006229 528 -------------DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG--HDKKAVLWCTESFTVKST 592 (655)
Q Consensus 528 -------------d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs--~DgtVrIWDl~t~~~l~t 592 (655)
...|+++++|++..+.....+ ...+-|++|.|++..+-|+++. .+..|.||++.+.+.+..
T Consensus 351 wcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~v----dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~ 426 (484)
T KOG0305|consen 351 WCPWQSGLLATGGGSADRCIKFWNTNTGARIDSV----DTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAE 426 (484)
T ss_pred eCCCccCceEEcCCCcccEEEEEEcCCCcEeccc----ccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeee
Confidence 455777788888766444333 2246799999999887666643 466899999999999999
Q ss_pred ecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 006229 593 LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENV 629 (655)
Q Consensus 593 l~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg 629 (655)
+.||+..|.+++++|||..|+||+.|.++|+|++-+.
T Consensus 427 l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 427 LLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred ecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 9999999999999999999999999999999999764
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.7e-09 Score=105.30 Aligned_cols=116 Identities=26% Similarity=0.346 Sum_probs=89.0
Q ss_pred CceEEEEecCCCCcccccCcccCCCCcE-EEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCee
Q 006229 481 SKSLLMFGSDGMGSLTSAPNQLTDMDRF-VDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE 559 (655)
Q Consensus 481 d~s~l~ws~dg~~~lasss~~l~~~~~~-LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~ 559 (655)
+...+.|+|++. +| +..|..+..|.+|+.. ...+..+. ...+.
T Consensus 61 ~I~~~~WsP~g~--------------~favi~g~~~~~v~lyd~~--------------------~~~i~~~~--~~~~n 104 (194)
T PF08662_consen 61 PIHDVAWSPNGN--------------EFAVIYGSMPAKVTLYDVK--------------------GKKIFSFG--TQPRN 104 (194)
T ss_pred ceEEEEECcCCC--------------EEEEEEccCCcccEEEcCc--------------------ccEeEeec--CCCce
Confidence 467888999876 44 4456677889999442 13344443 45678
Q ss_pred EEEEcCCCCEEEEEeCC---CcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeC------CCcEEEEECCCCe
Q 006229 560 SCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA------DRTVRVWDTENVR 630 (655)
Q Consensus 560 sl~fSpdG~lLaSgs~D---gtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~------DgtVrVWDl~tg~ 630 (655)
.|.|||+|++|++|+.+ |.|.|||+++.+.+.+++ |. .+++++|+|||++|+|++. |..++||+.. |+
T Consensus 105 ~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~ 181 (194)
T PF08662_consen 105 TISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GR 181 (194)
T ss_pred EEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-Ce
Confidence 99999999999998854 569999999999987775 43 4789999999999999875 7889999985 66
Q ss_pred EEEEE
Q 006229 631 KLTFI 635 (655)
Q Consensus 631 ~v~~l 635 (655)
.+...
T Consensus 182 ~l~~~ 186 (194)
T PF08662_consen 182 LLYKK 186 (194)
T ss_pred EeEec
Confidence 66543
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.07 E-value=8.2e-10 Score=129.14 Aligned_cols=174 Identities=13% Similarity=0.173 Sum_probs=123.8
Q ss_pred ceeccCCCCceEEEEecCCC---Cc-----------ccccCcccCCCC-cEEEeccCCCcEEEEecCCCC----------
Q 006229 473 TLQHNGASSKSLLMFGSDGM---GS-----------LTSAPNQLTDMD-RFVDDGSLDDNVESFLSPDDA---------- 527 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~---~~-----------lasss~~l~~~~-~~LasGS~D~tV~vW~s~d~~---------- 527 (655)
.+++.+..|+.+..|+++.. .. -.+...+|.... .++++|+.|+.|.+|+.....
T Consensus 81 GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~ 160 (1049)
T KOG0307|consen 81 GLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAP 160 (1049)
T ss_pred ceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCC
Confidence 46777788999999998761 00 011112333333 389999999999999766543
Q ss_pred -------------------CCCCccccccccCCCceeeeEEeecCCC--CCeeEEEEcCCCC-EEEEEeCCC---cEEEE
Q 006229 528 -------------------DPRDRVGRSAEVGKGFTFTEFQLIPAST--SKVESCHFSPDGK-LLATGGHDK---KAVLW 582 (655)
Q Consensus 528 -------------------d~~d~~~~l~d~~~~~t~~~v~~l~gH~--~~V~sl~fSpdG~-lLaSgs~Dg---tVrIW 582 (655)
.......-+||+... +.+-.+..|. ..|..|.|||+.. .|++++.|. .|.+|
T Consensus 161 ~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~---~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlW 237 (1049)
T KOG0307|consen 161 PSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK---KPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLW 237 (1049)
T ss_pred cccceEeccchhhhHHhhccCCCCCceeccccCC---CcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEee
Confidence 111223356666654 3333333343 3478999999765 677776653 69999
Q ss_pred eCCC-CeEEEEecccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEec
Q 006229 583 CTES-FTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAP 654 (655)
Q Consensus 583 Dl~t-~~~l~tl~gH~~~ItsVafsPdg-~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P 654 (655)
|++- ...++++++|...|.+|.|++.+ ++|+|++.|+.|.+|+..+++.+..+......+. .+.|+|
T Consensus 238 DlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~f-----dv~w~p 306 (1049)
T KOG0307|consen 238 DLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCF-----DVQWCP 306 (1049)
T ss_pred cccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCccee-----eeeecC
Confidence 9873 45778889999999999999966 8999999999999999999999998877655543 566666
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.2e-09 Score=106.67 Aligned_cols=90 Identities=18% Similarity=0.189 Sum_probs=71.6
Q ss_pred eeEEEEcCCCCEEEE-EeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeEEEEE
Q 006229 558 VESCHFSPDGKLLAT-GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENVRKLTFI 635 (655)
Q Consensus 558 V~sl~fSpdG~lLaS-gs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS-~DgtVrVWDl~tg~~v~~l 635 (655)
...++|+|+++++++ .+.++.|.+||+++++.+..+. +...+++++|+|+|.+|++++ .+++|+|||+++++++..+
T Consensus 209 ~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~ 287 (300)
T TIGR03866 209 PVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSI 287 (300)
T ss_pred ccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence 346889999997554 4556789999999988876653 456899999999999998864 6999999999999999988
Q ss_pred ecccceeeeeceeeEEEec
Q 006229 636 CCYKCIFVSTAIGSCFFAP 654 (655)
Q Consensus 636 ~~~~~~v~s~~Vss~~F~P 654 (655)
..+..+ ..++|+|
T Consensus 288 ~~~~~~------~~~~~~~ 300 (300)
T TIGR03866 288 KVGRLP------WGVVVRP 300 (300)
T ss_pred Eccccc------ceeEeCC
Confidence 765332 4566665
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.8e-09 Score=109.04 Aligned_cols=135 Identities=17% Similarity=0.221 Sum_probs=103.3
Q ss_pred ceeccCCCCceEEEEecCCC-------CcccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCcee
Q 006229 473 TLQHNGASSKSLLMFGSDGM-------GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTF 545 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~-------~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~ 545 (655)
..+..++.|+++..|+.... .........|.+ +..+++|+.|+.|+.++...+
T Consensus 26 ~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~------------------- 85 (323)
T KOG1036|consen 26 SDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTG------------------- 85 (323)
T ss_pred CcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccC-CceEEEeccCceEEEEEecCC-------------------
Confidence 45566678999999988762 122233334555 356789999999999976655
Q ss_pred eeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 006229 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (655)
Q Consensus 546 ~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWD 625 (655)
....+-.|..+|.||.+++....+++||+|++|++||.+......++. -...|.|+... +..|+.|+.|..|.+||
T Consensus 86 -~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~--g~~LvVg~~~r~v~iyD 161 (323)
T KOG1036|consen 86 -NEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVS--GNRLVVGTSDRKVLIYD 161 (323)
T ss_pred -cceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEecc--CCEEEEeecCceEEEEE
Confidence 234456799999999999988899999999999999999755665655 33488888765 78999999999999999
Q ss_pred CCCCeE
Q 006229 626 TENVRK 631 (655)
Q Consensus 626 l~tg~~ 631 (655)
+++...
T Consensus 162 LRn~~~ 167 (323)
T KOG1036|consen 162 LRNLDE 167 (323)
T ss_pred cccccc
Confidence 997543
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.7e-09 Score=110.85 Aligned_cols=107 Identities=18% Similarity=0.287 Sum_probs=87.0
Q ss_pred cEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCC-EEEEEeCCCcEEEEeCC
Q 006229 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTE 585 (655)
Q Consensus 507 ~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~-lLaSgs~DgtVrIWDl~ 585 (655)
++|.+.|.|.++.+|+...+ ........+-+|...|..|+|..++. .||+.|.||.||+||++
T Consensus 164 ~~igtSSiDTTCTiWdie~~----------------~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR 227 (364)
T KOG0290|consen 164 NLIGTSSIDTTCTIWDIETG----------------VSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLR 227 (364)
T ss_pred ceeEeecccCeEEEEEEeec----------------cccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEec
Confidence 67889999999999965543 12234456678999999999998665 89999999999999986
Q ss_pred CC------------------------------------------------eEEEEecccCCCEEEEEEcCC-CCEEEEEe
Q 006229 586 SF------------------------------------------------TVKSTLEEHTQWITDVRFSPS-LSRLATSS 616 (655)
Q Consensus 586 t~------------------------------------------------~~l~tl~gH~~~ItsVafsPd-g~~LaSgS 616 (655)
.. ..+..|++|...|+.|+|.|. ...|.||+
T Consensus 228 ~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaG 307 (364)
T KOG0290|consen 228 SLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAG 307 (364)
T ss_pred ccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecC
Confidence 31 234567789999999999995 56899999
Q ss_pred CCCcEEEEECCCC
Q 006229 617 ADRTVRVWDTENV 629 (655)
Q Consensus 617 ~DgtVrVWDl~tg 629 (655)
.|..+.|||+...
T Consensus 308 DD~qaliWDl~q~ 320 (364)
T KOG0290|consen 308 DDCQALIWDLQQM 320 (364)
T ss_pred CcceEEEEecccc
Confidence 9999999999753
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.2e-09 Score=115.88 Aligned_cols=153 Identities=14% Similarity=0.217 Sum_probs=118.4
Q ss_pred eeccCCCCceEEEEecCC-----------------CCcccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccc
Q 006229 474 LQHNGASSKSLLMFGSDG-----------------MGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRS 536 (655)
Q Consensus 474 ~~~s~S~d~s~l~ws~dg-----------------~~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l 536 (655)
.+.+++.|+.+++|.... .+.-++...++.+.+..+++|+.++.|-+|-..+..+..... .
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~--e 105 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADT--E 105 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccc--h
Confidence 556666777777775532 112344455778888899999999999999655422110000 0
Q ss_pred cccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEe
Q 006229 537 AEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS 616 (655)
Q Consensus 537 ~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS 616 (655)
.+. ....+...+.+.+|...|..++|+||+.++++++.|.++++||+..|..+..+.+|...|.-|+|.|.+.++++-|
T Consensus 106 ~~~-~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s 184 (434)
T KOG1009|consen 106 ADL-NKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKS 184 (434)
T ss_pred hhh-CccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhc
Confidence 011 1233567788889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEECCCC
Q 006229 617 ADRTVRVWDTENV 629 (655)
Q Consensus 617 ~DgtVrVWDl~tg 629 (655)
.|...+++++...
T Consensus 185 ~dr~~~~~~~~~~ 197 (434)
T KOG1009|consen 185 SDRHPEGFSAKLK 197 (434)
T ss_pred cCcccceeeeeee
Confidence 9998888877643
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.5e-09 Score=112.26 Aligned_cols=105 Identities=25% Similarity=0.366 Sum_probs=85.9
Q ss_pred CCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 006229 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (655)
Q Consensus 503 ~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIW 582 (655)
.+...+|.++|.|..|.+|... + ..+..+......-+.+++||+|++|++++.---|+||
T Consensus 196 A~~~k~imsas~dt~i~lw~lk-G-------------------q~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVw 255 (420)
T KOG2096|consen 196 AGNAKYIMSASLDTKICLWDLK-G-------------------QLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVW 255 (420)
T ss_pred cCCceEEEEecCCCcEEEEecC-C-------------------ceeeeeccccccccceeeCCCCcEEEEecCCCCceEE
Confidence 5666899999999999999433 1 2334444444556688999999999999999999999
Q ss_pred eC---CCC-----eEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 006229 583 CT---ESF-----TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (655)
Q Consensus 583 Dl---~t~-----~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~ 627 (655)
.+ +.| ..+..|+||...|+.++|+++.++++|.|.||++||||++
T Consensus 256 E~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 256 EPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred EEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence 86 233 3456789999999999999999999999999999999986
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.9e-09 Score=111.79 Aligned_cols=75 Identities=20% Similarity=0.355 Sum_probs=63.2
Q ss_pred CCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECC
Q 006229 553 ASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTE 627 (655)
Q Consensus 553 gH~~~V~sl~fSp-dG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~-DgtVrVWDl~ 627 (655)
+..+-|.|++||| +.+.++.|+.-.++-|+.-..++++..+-||.+.||.++|+++|+.|++|+. |-.|.+||+|
T Consensus 205 gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR 281 (406)
T KOG2919|consen 205 GQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIR 281 (406)
T ss_pred cccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeeh
Confidence 3367789999999 7779999999999999999999999999999999999999888777776664 5566667666
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.1e-10 Score=131.57 Aligned_cols=148 Identities=18% Similarity=0.172 Sum_probs=113.3
Q ss_pred CceEEEEecCCCCcccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeE
Q 006229 481 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 560 (655)
Q Consensus 481 d~s~l~ws~dg~~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~s 560 (655)
.-..+.|+..+.+. + -+|+.|..||+|.+|+...- ........+.++..|++.|..
T Consensus 66 rF~kL~W~~~g~~~----------~-GlIaGG~edG~I~ly~p~~~-------------~~~~~~~~la~~~~h~G~V~g 121 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHS----------H-GLIAGGLEDGNIVLYDPASI-------------IANASEEVLATKSKHTGPVLG 121 (1049)
T ss_pred cceeeeecccCCCc----------c-ceeeccccCCceEEecchhh-------------ccCcchHHHhhhcccCCceee
Confidence 44667788866522 1 46889999999999954331 112233567788899999999
Q ss_pred EEEcCCCC-EEEEEeCCCcEEEEeCCCCeEEEEec--ccCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeEEEEEe
Q 006229 561 CHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENVRKLTFIC 636 (655)
Q Consensus 561 l~fSpdG~-lLaSgs~DgtVrIWDl~t~~~l~tl~--gH~~~ItsVafsPd-g~~LaSgS~DgtVrVWDl~tg~~v~~l~ 636 (655)
++|++... +||+|+.||.|.|||+...+.-.++. .-.+.|.||+|... ...|+|++.+|++-|||+|..+.+..+.
T Consensus 122 LDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls 201 (1049)
T KOG0307|consen 122 LDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLS 201 (1049)
T ss_pred eeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccc
Confidence 99999555 99999999999999998755444442 24678999999874 4568999999999999999888887777
Q ss_pred cccceeeeeceeeEEEecC
Q 006229 637 CYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 637 ~~~~~v~s~~Vss~~F~P~ 655 (655)
.+... ..++.+.|||+
T Consensus 202 ~~~~~---~~~S~l~WhP~ 217 (1049)
T KOG0307|consen 202 DTPGR---MHCSVLAWHPD 217 (1049)
T ss_pred cCCCc---cceeeeeeCCC
Confidence 66554 55779999996
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.8e-10 Score=130.40 Aligned_cols=103 Identities=24% Similarity=0.368 Sum_probs=92.5
Q ss_pred cCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEE
Q 006229 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 581 (655)
Q Consensus 502 l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrI 581 (655)
++..+++|.+|+.|.-|++|-..+. .+...++||.+.|+.++.+....++++++.|+.|++
T Consensus 198 fDrtg~~Iitgsdd~lvKiwS~et~-------------------~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrv 258 (1113)
T KOG0644|consen 198 FDRTGRYIITGSDDRLVKIWSMETA-------------------RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRV 258 (1113)
T ss_pred eccccceEeecCccceeeeeeccch-------------------hhhccCCCCccccchhccchhhhhhhhcccCceEEE
Confidence 4445579999999999999953333 678888999999999999998889999999999999
Q ss_pred EeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 006229 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (655)
Q Consensus 582 WDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~ 627 (655)
|.+.++.++..+.||++.|++|+|+|-- +.+.||++++||.+
T Consensus 259 Wrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 259 WRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR 300 (1113)
T ss_pred EecCCCchHHHHhccccceeeeccCccc----cCCCCCceEecccc
Confidence 9999999999999999999999999954 78899999999998
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.7e-08 Score=100.55 Aligned_cols=91 Identities=16% Similarity=0.224 Sum_probs=73.4
Q ss_pred CCCeeEEEEcCCCCEEEEE--eCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCC
Q 006229 555 TSKVESCHFSPDGKLLATG--GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENV 629 (655)
Q Consensus 555 ~~~V~sl~fSpdG~lLaSg--s~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~D---gtVrVWDl~tg 629 (655)
.+.|.+++|+|+|+.||+. ..++.|.|||++ ++.+.++. ...++.|+|+|+|++|++|+.+ |.|.+||+++.
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~ 135 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK 135 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 3569999999999976554 467899999997 66666664 5678999999999999999865 56999999999
Q ss_pred eEEEEEecccceeeeeceeeEEEecC
Q 006229 630 RKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 630 ~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
+++..+.... +..+.|+||
T Consensus 136 ~~i~~~~~~~-------~t~~~WsPd 154 (194)
T PF08662_consen 136 KKISTFEHSD-------ATDVEWSPD 154 (194)
T ss_pred EEeeccccCc-------EEEEEEcCC
Confidence 8887765332 357899996
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.8e-09 Score=113.57 Aligned_cols=124 Identities=18% Similarity=0.200 Sum_probs=99.3
Q ss_pred cEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCC
Q 006229 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE 585 (655)
Q Consensus 507 ~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSp-dG~lLaSgs~DgtVrIWDl~ 585 (655)
.+|.+++++|.|.+|++..-. ..+.-...|+.+...|||+| +..+|++.|.|++|.+||+.
T Consensus 178 ~lL~~asd~G~VtlwDv~g~s------------------p~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~ 239 (673)
T KOG4378|consen 178 FLLSIASDKGAVTLWDVQGMS------------------PIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIR 239 (673)
T ss_pred eeeEeeccCCeEEEEeccCCC------------------cccchhhhccCCcCcceecCCccceEEEecccceEEEeecc
Confidence 346788999999999765441 12333467999999999999 67799999999999999999
Q ss_pred CCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CeEEEEEecccceeeeeceeeEEEec
Q 006229 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-VRKLTFICCYKCIFVSTAIGSCFFAP 654 (655)
Q Consensus 586 t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~t-g~~v~~l~~~~~~v~s~~Vss~~F~P 654 (655)
..+...++. .+.+.++|+|.++|.+|+.|+..|.|..||+|. ...+.++..|... |.+++|-|
T Consensus 240 s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~s-----Vt~vafq~ 303 (673)
T KOG4378|consen 240 SQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDAS-----VTRVAFQP 303 (673)
T ss_pred cccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccc-----eeEEEeee
Confidence 777666665 566889999999999999999999999999985 4556667666654 55667765
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.9e-09 Score=111.81 Aligned_cols=154 Identities=14% Similarity=0.191 Sum_probs=105.7
Q ss_pred ceeccCCCCceEEEEecCCCCccccc--------CcccCCCCcEEEeccCCCcEEEEecCCCC-----------------
Q 006229 473 TLQHNGASSKSLLMFGSDGMGSLTSA--------PNQLTDMDRFVDDGSLDDNVESFLSPDDA----------------- 527 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~~lass--------s~~l~~~~~~LasGS~D~tV~vW~s~d~~----------------- 527 (655)
..+.+++.|+.+++|+.......... ...+.. ..+.+++.|++|+.|-.....
T Consensus 80 s~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~ 157 (433)
T KOG0268|consen 80 STVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHR 157 (433)
T ss_pred hhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCCcceeeecccccccccccc
Confidence 56778889999999999762111110 111122 445677799999999522211
Q ss_pred --CCCCcc---ccccccCCCceeeeEEeecCCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeEE-----------
Q 006229 528 --DPRDRV---GRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVK----------- 590 (655)
Q Consensus 528 --d~~d~~---~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSp-dG~lLaSgs~DgtVrIWDl~t~~~l----------- 590 (655)
.....+ +.+||.... .++..+.--.+.|.||.|+| .-.+|++|+.|+.|.|||+++..++
T Consensus 158 ~~~~FaTcGe~i~IWD~~R~---~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~ 234 (433)
T KOG0268|consen 158 KNSVFATCGEQIDIWDEQRD---NPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNT 234 (433)
T ss_pred ccccccccCceeeecccccC---CccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccc
Confidence 000111 234544433 34555555567799999999 4558888989999999998765332
Q ss_pred -------------------------------EEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE
Q 006229 591 -------------------------------STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRK 631 (655)
Q Consensus 591 -------------------------------~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~ 631 (655)
....+|.+.|.+|+|+|.|.-++|||.|++||||.++.+..
T Consensus 235 IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~S 306 (433)
T KOG0268|consen 235 ICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHS 306 (433)
T ss_pred eecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcc
Confidence 23456889999999999999999999999999999986643
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.2e-09 Score=114.18 Aligned_cols=133 Identities=22% Similarity=0.275 Sum_probs=93.5
Q ss_pred cEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCC
Q 006229 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE 585 (655)
Q Consensus 507 ~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSp-dG~lLaSgs~DgtVrIWDl~ 585 (655)
.+|++|..-|.|-+|+.... ......+..+..|..+|.++.|+| +-..+++.|+||+||+-|++
T Consensus 201 ~lva~GdK~G~VG~Wn~~~~---------------~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~ 265 (498)
T KOG4328|consen 201 KLVAVGDKGGQVGLWNFGTQ---------------EKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFE 265 (498)
T ss_pred eEEEEccCCCcEEEEecCCC---------------CCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeec
Confidence 57899999999999966311 111133555678999999999999 66689999999999998765
Q ss_pred CC---------------------------------------------eEEEEecccCCCEEEEEEcCCCC-EEEEEeCCC
Q 006229 586 SF---------------------------------------------TVKSTLEEHTQWITDVRFSPSLS-RLATSSADR 619 (655)
Q Consensus 586 t~---------------------------------------------~~l~tl~gH~~~ItsVafsPdg~-~LaSgS~Dg 619 (655)
.. .....++-|+..|++|+++|-.. +|||||.|+
T Consensus 266 ~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~ 345 (498)
T KOG4328|consen 266 GNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQ 345 (498)
T ss_pred chhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCc
Confidence 31 01112233788999999999664 699999999
Q ss_pred cEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 620 TVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 620 tVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
+++|||+|....-.. .--...-+...|.++.|+|+
T Consensus 346 T~kIWD~R~l~~K~s-p~lst~~HrrsV~sAyFSPs 380 (498)
T KOG4328|consen 346 TAKIWDLRQLRGKAS-PFLSTLPHRRSVNSAYFSPS 380 (498)
T ss_pred ceeeeehhhhcCCCC-cceecccccceeeeeEEcCC
Confidence 999999985322211 00112223445778899985
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.4e-09 Score=108.52 Aligned_cols=71 Identities=28% Similarity=0.520 Sum_probs=68.3
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 006229 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (655)
Q Consensus 556 ~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl 626 (655)
-.|..+..-||++.|||+|+|+.||||..+++..+..++-|++.|++|+|+|+...+|.+|.|++|.+|++
T Consensus 252 pGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 252 PGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred CCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 45888899999999999999999999999999999999999999999999999999999999999999986
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.2e-09 Score=115.58 Aligned_cols=94 Identities=20% Similarity=0.345 Sum_probs=81.4
Q ss_pred EeecCCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCC-------eEEEEecccCCCEEEEEEcCC-CCEEEEEeCCC
Q 006229 549 QLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESF-------TVKSTLEEHTQWITDVRFSPS-LSRLATSSADR 619 (655)
Q Consensus 549 ~~l~gH~~~V~sl~fSp-dG~lLaSgs~DgtVrIWDl~t~-------~~l~tl~gH~~~ItsVafsPd-g~~LaSgS~Dg 619 (655)
-.+.||++.|..++|+| +...|||||+|.+|.||.+... +.+..|.||...|..|.|+|. .+.|+|++.|.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 34569999999999999 7779999999999999998532 567789999999999999995 46899999999
Q ss_pred cEEEEECCCCeEEEEEecccceee
Q 006229 620 TVRVWDTENVRKLTFICCYKCIFV 643 (655)
Q Consensus 620 tVrVWDl~tg~~v~~l~~~~~~v~ 643 (655)
+|.|||+.+|+.+.++. |...+.
T Consensus 155 ~v~iWnv~tgeali~l~-hpd~i~ 177 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HPDMVY 177 (472)
T ss_pred eEEEEeccCCceeeecC-CCCeEE
Confidence 99999999999998887 544443
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.6e-10 Score=130.83 Aligned_cols=104 Identities=20% Similarity=0.359 Sum_probs=96.0
Q ss_pred eeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 006229 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (655)
Q Consensus 546 ~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWD 625 (655)
+.++.+.+|..+|+|+.|...|+++++|+.|..|+||.++++.|+.++.||++.|++++.+.+..+++++|.|..|+||.
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEecccceeeeeceeeEEEec
Q 006229 626 TENVRKLTFICCYKCIFVSTAIGSCFFAP 654 (655)
Q Consensus 626 l~tg~~v~~l~~~~~~v~s~~Vss~~F~P 654 (655)
+.++..+..+.+|...+ .+++|+|
T Consensus 261 l~~~~pvsvLrghtgav-----taiafsP 284 (1113)
T KOG0644|consen 261 LPDGAPVSVLRGHTGAV-----TAIAFSP 284 (1113)
T ss_pred cCCCchHHHHhccccce-----eeeccCc
Confidence 99999999999887654 4666666
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.4e-08 Score=102.87 Aligned_cols=96 Identities=32% Similarity=0.455 Sum_probs=84.7
Q ss_pred eeEEeecCCCCCeeEEEEcCCCCEEEEEeC-CCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCC-EEEEEeCCCcEEE
Q 006229 546 TEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRV 623 (655)
Q Consensus 546 ~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~-DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~-~LaSgS~DgtVrV 623 (655)
..+..+..|...|.+++|+|+++++++++. |+.+++|++..++.+..+.+|...|.+++|+|++. .+++++.|++|++
T Consensus 146 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~ 225 (466)
T COG2319 146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRL 225 (466)
T ss_pred eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEE
Confidence 566778899999999999999999999886 99999999999999999999999999999999998 6666699999999
Q ss_pred EECCCCeEEE-EEecccce
Q 006229 624 WDTENVRKLT-FICCYKCI 641 (655)
Q Consensus 624 WDl~tg~~v~-~l~~~~~~ 641 (655)
||...+.++. .+.+|...
T Consensus 226 wd~~~~~~~~~~~~~~~~~ 244 (466)
T COG2319 226 WDLSTGKLLRSTLSGHSDS 244 (466)
T ss_pred EECCCCcEEeeecCCCCcc
Confidence 9999888887 56666554
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.1e-09 Score=115.66 Aligned_cols=112 Identities=22% Similarity=0.297 Sum_probs=84.4
Q ss_pred CCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcC-CCCEEEEEeCCCcEEE
Q 006229 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVL 581 (655)
Q Consensus 503 ~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSp-dG~lLaSgs~DgtVrI 581 (655)
.+.+..|++.+-|.++++|++..+. ..-.+.+.+|.+.|.++||.+ |...|++|+.|+.|.|
T Consensus 109 apge~~lVsasGDsT~r~Wdvk~s~-----------------l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~ill 171 (720)
T KOG0321|consen 109 APGESLLVSASGDSTIRPWDVKTSR-----------------LVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILL 171 (720)
T ss_pred CCCceeEEEccCCceeeeeeeccce-----------------eecceeecccccccchhhhccCCCcceeeccCCCcEEE
Confidence 4445668888889999999765551 112234789999999999999 5669999999999999
Q ss_pred EeCCCC---------------------------eEEEEecccCCCEEE---EEEcCCCCEEEEEeC-CCcEEEEECCCCe
Q 006229 582 WCTESF---------------------------TVKSTLEEHTQWITD---VRFSPSLSRLATSSA-DRTVRVWDTENVR 630 (655)
Q Consensus 582 WDl~t~---------------------------~~l~tl~gH~~~Its---VafsPdg~~LaSgS~-DgtVrVWDl~tg~ 630 (655)
||++-. +.++...+|...|.+ |.+.-|...|||+|. |++|||||++...
T Consensus 172 WD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~ 251 (720)
T KOG0321|consen 172 WDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNY 251 (720)
T ss_pred EEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccc
Confidence 998521 112334456666666 666778899999998 9999999999654
Q ss_pred E
Q 006229 631 K 631 (655)
Q Consensus 631 ~ 631 (655)
+
T Consensus 252 ~ 252 (720)
T KOG0321|consen 252 T 252 (720)
T ss_pred c
Confidence 4
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=7.6e-08 Score=99.20 Aligned_cols=151 Identities=25% Similarity=0.359 Sum_probs=108.6
Q ss_pred CCCceEEEEecCC-CCc--------ccccCcccCCCCcEEEeccC-CCcEEEEecCCCCCCCCccccccccCCCceeeeE
Q 006229 479 ASSKSLLMFGSDG-MGS--------LTSAPNQLTDMDRFVDDGSL-DDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEF 548 (655)
Q Consensus 479 S~d~s~l~ws~dg-~~~--------lasss~~l~~~~~~LasGS~-D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v 548 (655)
..++.+.+|+... ... -.+....+.+.+.+++.++. |+.+++|....+ ..+
T Consensus 131 ~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~ 191 (466)
T COG2319 131 SLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG-------------------KPL 191 (466)
T ss_pred CCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC-------------------ceE
Confidence 3366777777764 111 01112234455556666664 888888854432 456
Q ss_pred EeecCCCCCeeEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeEEE-EecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 006229 549 QLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (655)
Q Consensus 549 ~~l~gH~~~V~sl~fSpdG~-lLaSgs~DgtVrIWDl~t~~~l~-tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl 626 (655)
..+.+|...|.+++|+|++. ++++++.|++|++||...+..+. .+.+|...+ ...|+|++.++++++.|+.+++||+
T Consensus 192 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~ 270 (466)
T COG2319 192 STLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDL 270 (466)
T ss_pred EeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeee
Confidence 66777999999999999998 66666999999999999888888 789999986 5589999999999999999999999
Q ss_pred CCCeE-EEEEecccceeeeeceeeEEEec
Q 006229 627 ENVRK-LTFICCYKCIFVSTAIGSCFFAP 654 (655)
Q Consensus 627 ~tg~~-v~~l~~~~~~v~s~~Vss~~F~P 654 (655)
+.... +..+..| ...+.++.|+|
T Consensus 271 ~~~~~~~~~~~~~-----~~~v~~~~~~~ 294 (466)
T COG2319 271 RSSSSLLRTLSGH-----SSSVLSVAFSP 294 (466)
T ss_pred cCCCcEEEEEecC-----CccEEEEEECC
Confidence 97665 4444333 33455567766
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=3e-09 Score=116.20 Aligned_cols=110 Identities=22% Similarity=0.400 Sum_probs=89.7
Q ss_pred ccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEE
Q 006229 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV 580 (655)
Q Consensus 501 ~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVr 580 (655)
.+.+.+++||+.|.|+.+|+|+.... ..+...+.--+...||+|||||++|++|++|--|.
T Consensus 297 ~FS~DG~~LA~VSqDGfLRvF~fdt~-------------------eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVt 357 (636)
T KOG2394|consen 297 AFSPDGKYLATVSQDGFLRIFDFDTQ-------------------ELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVT 357 (636)
T ss_pred eEcCCCceEEEEecCceEEEeeccHH-------------------HHHHHHHhhccceEEEEEcCCccEEEecCCcceEE
Confidence 34455679999999999999954332 22333444557899999999999999999999999
Q ss_pred EEeCCCCeEEEEecccCCCEEEEEEcC-----------------------------------CC-------------CEE
Q 006229 581 LWCTESFTVKSTLEEHTQWITDVRFSP-----------------------------------SL-------------SRL 612 (655)
Q Consensus 581 IWDl~t~~~l~tl~gH~~~ItsVafsP-----------------------------------dg-------------~~L 612 (655)
||.+...+.+..-.||+..|+.|+|+| ++ -+|
T Consensus 358 VwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRf 437 (636)
T KOG2394|consen 358 VWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRF 437 (636)
T ss_pred EEEeccceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEe
Confidence 999999999999999999999999983 01 147
Q ss_pred EEEeCCCcEEEEECCCC
Q 006229 613 ATSSADRTVRVWDTENV 629 (655)
Q Consensus 613 aSgS~DgtVrVWDl~tg 629 (655)
.|.+.|..+.|||+..-
T Consensus 438 GSVGqDTqlcLWDlteD 454 (636)
T KOG2394|consen 438 GSVGQDTQLCLWDLTED 454 (636)
T ss_pred ecccccceEEEEecchh
Confidence 78889999999999753
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.2e-09 Score=116.48 Aligned_cols=112 Identities=20% Similarity=0.223 Sum_probs=97.4
Q ss_pred ccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEE
Q 006229 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV 580 (655)
Q Consensus 501 ~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVr 580 (655)
.+++...++++++-|++|++|+...++ ..+.++.-++|.+....|...|.|.||++.+.|+++.
T Consensus 603 ~Vdp~~k~v~t~cQDrnirif~i~sgK----------------q~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~ 666 (1080)
T KOG1408|consen 603 AVDPTSKLVVTVCQDRNIRIFDIESGK----------------QVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLC 666 (1080)
T ss_pred eeCCCcceEEEEecccceEEEeccccc----------------eeeeecccccCCCceEEEEECCCccEEEEeecCCceE
Confidence 556777899999999999999665552 2233344456778888999999999999999999999
Q ss_pred EEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 006229 581 LWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (655)
Q Consensus 581 IWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~t 628 (655)
|+|.-+++|+..+.||...|+.|.|.+|.+.|+|++.||.|.||.+..
T Consensus 667 ~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 667 FVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 999999999999999999999999999999999999999999998863
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.8e-09 Score=106.36 Aligned_cols=97 Identities=21% Similarity=0.310 Sum_probs=76.5
Q ss_pred CCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCC-CEEEEEeCCCcEEEEeCCCC-eEEEEecccCCCEEEEEEcC
Q 006229 530 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFSP 607 (655)
Q Consensus 530 ~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG-~lLaSgs~DgtVrIWDl~t~-~~l~tl~gH~~~ItsVafsP 607 (655)
.++....||..+...... +..+|...|..++|+|+. .+|+||+.|+.|||||++.. ..+.++.+|+..|++|+|+|
T Consensus 191 ~d~tl~~~D~RT~~~~~s--I~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~ 268 (370)
T KOG1007|consen 191 SDSTLQFWDLRTMKKNNS--IEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNP 268 (370)
T ss_pred CCCcEEEEEccchhhhcc--hhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecC
Confidence 345556666664432222 234688889999999954 48999999999999999854 57889999999999999999
Q ss_pred C-CCEEEEEeCCCcEEEEECCC
Q 006229 608 S-LSRLATSSADRTVRVWDTEN 628 (655)
Q Consensus 608 d-g~~LaSgS~DgtVrVWDl~t 628 (655)
. ..+|+|||.|..|.+|.+.+
T Consensus 269 ~hdqLiLs~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 269 EHDQLILSGGSDSAVNLSCASS 290 (370)
T ss_pred ccceEEEecCCCceeEEEeccc
Confidence 5 46789999999999997653
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.4e-08 Score=106.99 Aligned_cols=100 Identities=24% Similarity=0.231 Sum_probs=85.5
Q ss_pred CCCCCeeEEEEcCCCCEEEEEe--CCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCc-EEEEECCCC
Q 006229 553 ASTSKVESCHFSPDGKLLATGG--HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT-VRVWDTENV 629 (655)
Q Consensus 553 gH~~~V~sl~fSpdG~lLaSgs--~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~Dgt-VrVWDl~tg 629 (655)
.+...+.++.+++.+.+||--+ .-|.|.|||+.+.+.+.++..|++.|-||+|+++|.+|||+|+.|| |||+++.+|
T Consensus 127 ~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G 206 (391)
T KOG2110|consen 127 PNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG 206 (391)
T ss_pred CCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc
Confidence 3445566666666777887743 2488999999999999999999999999999999999999999998 899999999
Q ss_pred eEEEEEecccceeeeeceeeEEEecC
Q 006229 630 RKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 630 ~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
..+..|+-+.. ++.|.+++|||+
T Consensus 207 ~kl~eFRRG~~---~~~IySL~Fs~d 229 (391)
T KOG2110|consen 207 QKLYEFRRGTY---PVSIYSLSFSPD 229 (391)
T ss_pred cEeeeeeCCce---eeEEEEEEECCC
Confidence 99999976544 667999999996
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.2e-08 Score=109.78 Aligned_cols=98 Identities=17% Similarity=0.291 Sum_probs=79.3
Q ss_pred cccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE--EEecccCCCEEEEEEcCCCCEE
Q 006229 535 RSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STLEEHTQWITDVRFSPSLSRL 612 (655)
Q Consensus 535 ~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l--~tl~gH~~~ItsVafsPdg~~L 612 (655)
..||+.+. +....+....+.|.+++.+|.+..++.||+||.+.+++...++.. +.|-..++.|.+|.|+|++..|
T Consensus 93 ~EwDl~~l---k~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i 169 (691)
T KOG2048|consen 93 TEWDLHTL---KQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKI 169 (691)
T ss_pred EEEecccC---ceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEE
Confidence 44444443 445556667789999999999999999999998878887776543 3455678999999999999999
Q ss_pred EEEeCCCcEEEEECCCCeEEEEE
Q 006229 613 ATSSADRTVRVWDTENVRKLTFI 635 (655)
Q Consensus 613 aSgS~DgtVrVWDl~tg~~v~~l 635 (655)
++||.||.||+||+.++..++.+
T Consensus 170 ~~Gs~Dg~Iriwd~~~~~t~~~~ 192 (691)
T KOG2048|consen 170 AGGSIDGVIRIWDVKSGQTLHII 192 (691)
T ss_pred EecccCceEEEEEcCCCceEEEe
Confidence 99999999999999998887743
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.8e-09 Score=114.41 Aligned_cols=104 Identities=23% Similarity=0.352 Sum_probs=82.1
Q ss_pred eeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC----------------------C----------------
Q 006229 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----------------------F---------------- 587 (655)
Q Consensus 546 ~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t----------------------~---------------- 587 (655)
+..+.+.+|.++|.|-.|+|||.-|+|+|+||.|++|.-.. .
T Consensus 95 rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~ 174 (737)
T KOG1524|consen 95 RVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLA 174 (737)
T ss_pred hhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEeecc
Confidence 45566789999999999999999999999999999995321 0
Q ss_pred --eEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 588 --TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 588 --~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
..+-.+++|++.|.|+.|++....|+||++|...+|||.-... +. .+.++.-+|.+++|.|+
T Consensus 175 ~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~-Lf-----~S~~~ey~ITSva~npd 238 (737)
T KOG1524|consen 175 ANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGAN-LF-----TSAAEEYAITSVAFNPE 238 (737)
T ss_pred cccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcc-cc-----cCChhccceeeeeeccc
Confidence 1123556899999999999999999999999999999986432 22 23334556778888875
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.7e-09 Score=115.44 Aligned_cols=123 Identities=19% Similarity=0.240 Sum_probs=92.6
Q ss_pred CCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCC-EEEEEeCCCcEEEEe
Q 006229 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWC 583 (655)
Q Consensus 505 ~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~-lLaSgs~DgtVrIWD 583 (655)
++.+|++||.|..|++|..+.+-.. .+ . .....+-+-.-.|.|+.|+|... +|++++ .++|+|||
T Consensus 91 ~D~LLAT~S~D~~VKiW~lp~g~~q-----~L---S-----ape~~~g~~~~~vE~l~fHpTaDgil~s~a-~g~v~i~D 156 (1012)
T KOG1445|consen 91 ADELLATCSRDEPVKIWKLPRGHSQ-----KL---S-----APEIDVGGGNVIVECLRFHPTADGILASGA-HGSVYITD 156 (1012)
T ss_pred chhhhhcccCCCeeEEEecCCCccc-----cc---C-----CcceeecCCceEEEEeecccCcCceEEecc-CceEEEEE
Confidence 3467899999999999965533110 00 0 01111222234578999999544 555554 58999999
Q ss_pred CCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC-CCeEEEEEecccce
Q 006229 584 TESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE-NVRKLTFICCYKCI 641 (655)
Q Consensus 584 l~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~-tg~~v~~l~~~~~~ 641 (655)
+.+.+.+..+.+|.+.|-+..|+.||.+|++++.|+.|+|||.+ .++.+....+|...
T Consensus 157 ~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~~~ 215 (1012)
T KOG1445|consen 157 ISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGM 215 (1012)
T ss_pred cccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccccc
Confidence 99999999999999999999999999999999999999999998 46667777777654
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.6e-08 Score=105.66 Aligned_cols=108 Identities=24% Similarity=0.265 Sum_probs=81.6
Q ss_pred CCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCC-CCeeEEEEcCCCCEEEEEeC----CCcE
Q 006229 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST-SKVESCHFSPDGKLLATGGH----DKKA 579 (655)
Q Consensus 505 ~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~-~~V~sl~fSpdG~lLaSgs~----DgtV 579 (655)
..+.|.+|+.||+|++|+.+.-.. ..+..+..+. .+..|++....++++++|.. |-.|
T Consensus 83 s~h~v~s~ssDG~Vr~wD~Rs~~e-----------------~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v 145 (376)
T KOG1188|consen 83 SPHGVISCSSDGTVRLWDIRSQAE-----------------SARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASV 145 (376)
T ss_pred CCCeeEEeccCCeEEEEEeecchh-----------------hhheeccCCCCCcceEeeccCcCCeEEeccccccCceEE
Confidence 346788999999999996654310 1222334444 45677777777888888753 6789
Q ss_pred EEEeCCCCeE-EEEe-cccCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCC
Q 006229 580 VLWCTESFTV-KSTL-EEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENV 629 (655)
Q Consensus 580 rIWDl~t~~~-l~tl-~gH~~~ItsVafsPd-g~~LaSgS~DgtVrVWDl~tg 629 (655)
.+||++.... +..+ +.|.+.||+|+|+|. -..|+|||.||.|.|+|+...
T Consensus 146 ~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 146 VLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred EEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 9999997765 5554 589999999999995 578999999999999999743
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.84 E-value=3e-08 Score=101.86 Aligned_cols=83 Identities=27% Similarity=0.400 Sum_probs=71.6
Q ss_pred CCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCC---eEEEEecccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECC
Q 006229 553 ASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESF---TVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTE 627 (655)
Q Consensus 553 gH~~~V~sl~fSp-dG~lLaSgs~DgtVrIWDl~t~---~~l~tl~gH~~~ItsVafsPdg-~~LaSgS~DgtVrVWDl~ 627 (655)
.+.+++++++|+. |-++|.+.|-|.|+.|||++++ .....|-+|...|.+|+|...+ ..+||+|.||.||++|+|
T Consensus 148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR 227 (364)
T KOG0290|consen 148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLR 227 (364)
T ss_pred ccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEec
Confidence 4567899999998 8889999999999999999986 3567788999999999999865 479999999999999999
Q ss_pred CCeEEEEE
Q 006229 628 NVRKLTFI 635 (655)
Q Consensus 628 tg~~v~~l 635 (655)
..+.-..+
T Consensus 228 ~leHSTII 235 (364)
T KOG0290|consen 228 SLEHSTII 235 (364)
T ss_pred ccccceEE
Confidence 87655444
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.9e-08 Score=110.61 Aligned_cols=170 Identities=11% Similarity=0.122 Sum_probs=118.2
Q ss_pred CCceeccCCCCceEEEEe------cCCCCc--------c----cccCcccCCCCcEEEeccCCCcEEEEecCCCCC--C-
Q 006229 471 RPTLQHNGASSKSLLMFG------SDGMGS--------L----TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDAD--P- 529 (655)
Q Consensus 471 ~~~~~~s~S~d~s~l~ws------~dg~~~--------l----asss~~l~~~~~~LasGS~D~tV~vW~s~d~~d--~- 529 (655)
......+++.|+++..|+ ++.... . ++....+.....+|.++|.|++|+.|....... .
T Consensus 355 n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~ 434 (577)
T KOG0642|consen 355 NGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFG 434 (577)
T ss_pred CceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccC
Confidence 345677888999999993 332110 0 111113345556789999999999996544321 0
Q ss_pred --C----Cccc----------------cccccCCCceeeeEEeecC-------CCCCeeEEEEcCCCCEEEEEeCCCcEE
Q 006229 530 --R----DRVG----------------RSAEVGKGFTFTEFQLIPA-------STSKVESCHFSPDGKLLATGGHDKKAV 580 (655)
Q Consensus 530 --~----d~~~----------------~l~d~~~~~t~~~v~~l~g-------H~~~V~sl~fSpdG~lLaSgs~DgtVr 580 (655)
. ...+ +...+.+......+..+.. ....+.-|.++|.+.+.+++..|+.|+
T Consensus 435 ~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir 514 (577)
T KOG0642|consen 435 EPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIR 514 (577)
T ss_pred CccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCcee
Confidence 0 0000 0011111111111122221 123467889999999999999999999
Q ss_pred EEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccc
Q 006229 581 LWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKC 640 (655)
Q Consensus 581 IWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~ 640 (655)
++|..+++.++....|...|+++++.|+|-+|++++.|+.|++|.+....|+..+..|+.
T Consensus 515 ~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r~ 574 (577)
T KOG0642|consen 515 FFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHRK 574 (577)
T ss_pred cccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeeccccccc
Confidence 999999999999999999999999999999999999999999999999999987776654
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=98.82 E-value=5e-09 Score=117.23 Aligned_cols=109 Identities=26% Similarity=0.370 Sum_probs=88.4
Q ss_pred eeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCC-----cEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCC
Q 006229 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDK-----KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 619 (655)
Q Consensus 545 ~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~Dg-----tVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~Dg 619 (655)
+.++..+.||...|+||+.+|+|+++||++... .|+||++.+...+..+.+|.-.|+.++|+|||++|+++|.|+
T Consensus 515 wPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDR 594 (764)
T KOG1063|consen 515 WPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDR 594 (764)
T ss_pred chhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCc
Confidence 345667789999999999999999999998653 589999999988889999999999999999999999999999
Q ss_pred cEEEEECCCCeEE-EEEecccceeeeeceeeEEEecC
Q 006229 620 TVRVWDTENVRKL-TFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 620 tVrVWDl~tg~~v-~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
++.||........ ..|.+ ...+.-.|.+|.|+|+
T Consensus 595 t~sl~~~~~~~~~e~~fa~--~k~HtRIIWdcsW~pd 629 (764)
T KOG1063|consen 595 TVSLYEVQEDIKDEFRFAC--LKAHTRIIWDCSWSPD 629 (764)
T ss_pred eEEeeeeecccchhhhhcc--ccccceEEEEcccCcc
Confidence 9999987532211 11111 2334455779999986
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.3e-08 Score=108.39 Aligned_cols=157 Identities=15% Similarity=0.185 Sum_probs=116.6
Q ss_pred eccCCCCceEEEEecCCCCcccccCc-----------ccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCc
Q 006229 475 QHNGASSKSLLMFGSDGMGSLTSAPN-----------QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGF 543 (655)
Q Consensus 475 ~~s~S~d~s~l~ws~dg~~~lasss~-----------~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~ 543 (655)
..+.+.++.+.+|.-+|... .++.. ....-+.++.+|+..++|++|+....
T Consensus 50 vas~~gdk~~~~~~K~g~~~-~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k----------------- 111 (673)
T KOG4378|consen 50 VASMAGDKVMRIKEKDGKTP-EVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAK----------------- 111 (673)
T ss_pred EeecCCceeEEEecccCCCC-ccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHH-----------------
Confidence 34455789999999988621 11111 11222377888989999999954321
Q ss_pred eeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccc-CCCEEEEEEcCCCCE-EEEEeCCCcE
Q 006229 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSR-LATSSADRTV 621 (655)
Q Consensus 544 t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH-~~~ItsVafsPdg~~-LaSgS~DgtV 621 (655)
.+.+.+++|.+.|+|+.++....+||+++..|-|.|..+.++....+|... ...|.-|+|+|..++ |.++|.||+|
T Consensus 112 --l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~V 189 (673)
T KOG4378|consen 112 --LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAV 189 (673)
T ss_pred --HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeE
Confidence 467788999999999999999999999999999999999998887788633 456779999998765 7789999999
Q ss_pred EEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 622 RVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 622 rVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
.|||+.....+..+. .+++.....++|+|.
T Consensus 190 tlwDv~g~sp~~~~~----~~HsAP~~gicfsps 219 (673)
T KOG4378|consen 190 TLWDVQGMSPIFHAS----EAHSAPCRGICFSPS 219 (673)
T ss_pred EEEeccCCCcccchh----hhccCCcCcceecCC
Confidence 999998777664332 233444557778774
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.1e-08 Score=113.57 Aligned_cols=112 Identities=16% Similarity=0.221 Sum_probs=91.1
Q ss_pred CCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 006229 504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 583 (655)
Q Consensus 504 ~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWD 583 (655)
...+.|+.+-.|+.|.+++...- .++ .....+.....|...|..+.|.|....|++++.|.++|+||
T Consensus 62 n~eHiLavadE~G~i~l~dt~~~------~fr-------~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wd 128 (720)
T KOG0321|consen 62 NKEHILAVADEDGGIILFDTKSI------VFR-------LEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWD 128 (720)
T ss_pred CccceEEEecCCCceeeecchhh------hcc-------hhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeee
Confidence 34478889989999999954322 111 01122455668999999999999666999999999999999
Q ss_pred CCCCeEEEE--ecccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCC
Q 006229 584 TESFTVKST--LEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTEN 628 (655)
Q Consensus 584 l~t~~~l~t--l~gH~~~ItsVafsPdg-~~LaSgS~DgtVrVWDl~t 628 (655)
+.+.+++.. +.||+..|.++||.|.. ..|+||+.||.|.|||++-
T Consensus 129 vk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~ 176 (720)
T KOG0321|consen 129 VKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRC 176 (720)
T ss_pred eccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEec
Confidence 999998877 89999999999999965 5789999999999999973
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.5e-08 Score=102.01 Aligned_cols=104 Identities=20% Similarity=0.323 Sum_probs=81.9
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCC----CCeEEEEecccCCCEEEEEEcC--CCCEEEEEeCCCcEEEEE
Q 006229 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE----SFTVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWD 625 (655)
Q Consensus 552 ~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~----t~~~l~tl~gH~~~ItsVafsP--dg~~LaSgS~DgtVrVWD 625 (655)
.+|.+-|.|+.|...|+.+|||+.|.+|+|||.+ +..+...++.|.+.|..|.|.+ -|..+|++|.|++|+||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 4788999999999999999999999999999964 4478889999999999999976 488999999999999997
Q ss_pred CC--CCeE--EEEEecccceeeeeceeeEEEecC
Q 006229 626 TE--NVRK--LTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 626 l~--tg~~--v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
-. +.++ .+.+.+..-.-....|.++.|.|.
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~ 123 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPK 123 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecch
Confidence 62 2222 223333333334456778888883
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=8.2e-09 Score=112.91 Aligned_cols=82 Identities=22% Similarity=0.451 Sum_probs=75.3
Q ss_pred eEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe-cccCCCEEEEEEcC--CCCEEEEEeCCCcEEE
Q 006229 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSP--SLSRLATSSADRTVRV 623 (655)
Q Consensus 547 ~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl-~gH~~~ItsVafsP--dg~~LaSgS~DgtVrV 623 (655)
....+.||++-|+|+.|+.||.+|++||.|-.+.|||.-..+.++.+ .||+..|.|+.|-| +.+.++||+.|..|+|
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 34677899999999999999999999999999999999988888877 59999999999999 5678999999999999
Q ss_pred EECCC
Q 006229 624 WDTEN 628 (655)
Q Consensus 624 WDl~t 628 (655)
+|+..
T Consensus 122 fdl~~ 126 (758)
T KOG1310|consen 122 FDLDS 126 (758)
T ss_pred Eeccc
Confidence 99984
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=8.6e-08 Score=107.36 Aligned_cols=158 Identities=17% Similarity=0.164 Sum_probs=112.0
Q ss_pred ceeccCCCCceEEEEecCCCC--------cccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCce
Q 006229 473 TLQHNGASSKSLLMFGSDGMG--------SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFT 544 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~--------~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t 544 (655)
..+.+.+.++.+.-|++.... .-++.+.++.+.+..++.||.||.+..+....+ .
T Consensus 81 ~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~-----------------~ 143 (691)
T KOG2048|consen 81 GRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPD-----------------K 143 (691)
T ss_pred CeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCc-----------------e
Confidence 455555666777777775411 112334455677788888888884433322111 1
Q ss_pred eeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec--------ccCCCEEEEEEcCCCCEEEEEe
Q 006229 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE--------EHTQWITDVRFSPSLSRLATSS 616 (655)
Q Consensus 545 ~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~--------gH~~~ItsVafsPdg~~LaSgS 616 (655)
..-.+.+..-++.|.||.|++++..|++|+.|+.||+||+.++..++... +-..-|++|.|-. ...|++|.
T Consensus 144 I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr-d~tI~sgD 222 (691)
T KOG2048|consen 144 ITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR-DSTIASGD 222 (691)
T ss_pred EEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee-cCcEEEec
Confidence 12223444457889999999999999999999999999999987766221 1334588888874 46899999
Q ss_pred CCCcEEEEECCCCeEEEEEecccceeeeecee
Q 006229 617 ADRTVRVWDTENVRKLTFICCYKCIFVSTAIG 648 (655)
Q Consensus 617 ~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vs 648 (655)
.-|+|++||...+..+..+.+|..-+.+.++.
T Consensus 223 S~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~ 254 (691)
T KOG2048|consen 223 SAGTVTFWDSIFGTLIQSHSCHDADVLALAVA 254 (691)
T ss_pred CCceEEEEcccCcchhhhhhhhhcceeEEEEc
Confidence 99999999999999999999888777666553
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.76 E-value=7.2e-08 Score=101.77 Aligned_cols=85 Identities=26% Similarity=0.323 Sum_probs=76.2
Q ss_pred eeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCc-EEEEeCCCCeEEEEeccc--CCCEEEEEEcCCCCEEEEEeCCCc
Q 006229 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKK-AVLWCTESFTVKSTLEEH--TQWITDVRFSPSLSRLATSSADRT 620 (655)
Q Consensus 544 t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~Dgt-VrIWDl~t~~~l~tl~gH--~~~ItsVafsPdg~~LaSgS~Dgt 620 (655)
+...+..+..|.+.|-|++|+++|.+|||+|+.|+ |||+++.+|..+..|+.- ...|.+++|+|++.+|+..|.-+|
T Consensus 162 nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeT 241 (391)
T KOG2110|consen 162 NLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTET 241 (391)
T ss_pred cceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCe
Confidence 44677888899999999999999999999999887 799999999999999643 345899999999999999999999
Q ss_pred EEEEECCC
Q 006229 621 VRVWDTEN 628 (655)
Q Consensus 621 VrVWDl~t 628 (655)
|+|+.++.
T Consensus 242 VHiFKL~~ 249 (391)
T KOG2110|consen 242 VHIFKLEK 249 (391)
T ss_pred EEEEEecc
Confidence 99999875
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.7e-08 Score=108.92 Aligned_cols=113 Identities=20% Similarity=0.329 Sum_probs=93.5
Q ss_pred eEEEEecCCCCcccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeE-EeecCCCCCeeEE
Q 006229 483 SLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEF-QLIPASTSKVESC 561 (655)
Q Consensus 483 s~l~ws~dg~~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v-~~l~gH~~~V~sl 561 (655)
.++.|+.+|. +|++||.|-.+-+|+... .+.+ ..-.+|+..|.|+
T Consensus 54 N~LeWn~dG~---------------lL~SGSDD~r~ivWd~~~-------------------~KllhsI~TgHtaNIFsv 99 (758)
T KOG1310|consen 54 NCLEWNADGE---------------LLASGSDDTRLIVWDPFE-------------------YKLLHSISTGHTANIFSV 99 (758)
T ss_pred cceeecCCCC---------------EEeecCCcceEEeecchh-------------------cceeeeeecccccceeEE
Confidence 5677777766 999999999999995432 2333 3446999999999
Q ss_pred EEcC--CCCEEEEEeCCCcEEEEeCCC----------CeEEEEecccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCC
Q 006229 562 HFSP--DGKLLATGGHDKKAVLWCTES----------FTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTEN 628 (655)
Q Consensus 562 ~fSp--dG~lLaSgs~DgtVrIWDl~t----------~~~l~tl~gH~~~ItsVafsPdg-~~LaSgS~DgtVrVWDl~t 628 (655)
.|-| ..++++||..|+.|+|+|+.. .+.++.+.-|++.|..|+-.|++ ..+.++|+||+||-+|++.
T Consensus 100 KFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiRE 179 (758)
T KOG1310|consen 100 KFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE 179 (758)
T ss_pred eeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence 9999 556999999999999999974 23455667899999999999999 7899999999999999996
Q ss_pred C
Q 006229 629 V 629 (655)
Q Consensus 629 g 629 (655)
.
T Consensus 180 p 180 (758)
T KOG1310|consen 180 P 180 (758)
T ss_pred C
Confidence 4
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.1e-08 Score=109.12 Aligned_cols=77 Identities=31% Similarity=0.405 Sum_probs=72.0
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEe
Q 006229 559 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFIC 636 (655)
Q Consensus 559 ~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~ 636 (655)
.+++|+.+|..|++|+.||++|||+..+...+.....|...|.++.|+|||++|+|-+.| ..+|||++++.++....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t 224 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT 224 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC
Confidence 689999999999999999999999998888888888999999999999999999999999 99999999997776665
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=6.9e-08 Score=112.44 Aligned_cols=114 Identities=22% Similarity=0.294 Sum_probs=93.0
Q ss_pred CCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 006229 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (655)
Q Consensus 503 ~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIW 582 (655)
....-++++|+.-+.|-+|....++ ..+ .+.+|.+.|.++.|+.||+++++.|+|.++|+|
T Consensus 142 s~~~~~i~~gsv~~~iivW~~~~dn------------------~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW 202 (967)
T KOG0974|consen 142 SAEELYIASGSVFGEIIVWKPHEDN------------------KPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLW 202 (967)
T ss_pred cCcEEEEEeccccccEEEEeccccC------------------Ccc-eecccCCceEEEEEccCCcEEEEEecCcceeee
Confidence 3444678888888888899555221 111 578999999999999999999999999999999
Q ss_pred eCCCCeEEE-EecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecc
Q 006229 583 CTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCY 638 (655)
Q Consensus 583 Dl~t~~~l~-tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~ 638 (655)
++++.+... +.-||+..|+.++|.|+ +|+|++.|.++++|+.. +..+..+..|
T Consensus 203 ~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h 256 (967)
T KOG0974|consen 203 PIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEH 256 (967)
T ss_pred ecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhh
Confidence 999988776 67799999999999998 99999999999999665 3344455544
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.8e-07 Score=104.40 Aligned_cols=137 Identities=18% Similarity=0.271 Sum_probs=96.8
Q ss_pred CceEEEEecCCCCcccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeE
Q 006229 481 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 560 (655)
Q Consensus 481 d~s~l~ws~dg~~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~s 560 (655)
....+.|.|||. .++.. .+..+.+|+..+| ..+.++++|++.|+|
T Consensus 14 ci~d~afkPDGs--------------qL~lA--Ag~rlliyD~ndG-------------------~llqtLKgHKDtVyc 58 (1081)
T KOG1538|consen 14 CINDIAFKPDGT--------------QLILA--AGSRLLVYDTSDG-------------------TLLQPLKGHKDTVYC 58 (1081)
T ss_pred chheeEECCCCc--------------eEEEe--cCCEEEEEeCCCc-------------------ccccccccccceEEE
Confidence 456677888876 33332 2356778877766 467889999999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCC--------eEEE--Eec-------------------------cc--CCCEEEE
Q 006229 561 CHFSPDGKLLATGGHDKKAVLWCTESF--------TVKS--TLE-------------------------EH--TQWITDV 603 (655)
Q Consensus 561 l~fSpdG~lLaSgs~DgtVrIWDl~t~--------~~l~--tl~-------------------------gH--~~~ItsV 603 (655)
|+|+.||+++|+|+.|+.|.||...-. ..+. .|. .| ...|.++
T Consensus 59 VAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~C 138 (1081)
T KOG1538|consen 59 VAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICC 138 (1081)
T ss_pred EEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEe
Confidence 999999999999999999999975311 0000 010 01 2457788
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 604 RFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 604 afsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
+|.-||.+|+-|-.||||.|-+....+.+..-..+.. ...|.+++|+|+
T Consensus 139 sWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~---Nspiwsi~~~p~ 187 (1081)
T KOG1538|consen 139 SWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGS---NSPIWSICWNPS 187 (1081)
T ss_pred eecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCC---CCCceEEEecCC
Confidence 8999999999999999999987655444444333322 345678888874
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.2e-07 Score=92.42 Aligned_cols=101 Identities=15% Similarity=0.183 Sum_probs=74.2
Q ss_pred ccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccC----------CCEE
Q 006229 532 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT----------QWIT 601 (655)
Q Consensus 532 ~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~----------~~It 601 (655)
.++..||+.++ +.-+++++|++.|-|+.--....-++||++||+|||||+++.+++.++...+ ..|-
T Consensus 136 ~~~y~~dlE~G---~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wig 212 (325)
T KOG0649|consen 136 GVIYQVDLEDG---RIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIG 212 (325)
T ss_pred eEEEEEEecCC---EEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeE
Confidence 33334444444 5667889999999999885555678999999999999999999998876321 2355
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecc
Q 006229 602 DVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCY 638 (655)
Q Consensus 602 sVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~ 638 (655)
+|+- +..+|+.|+. ..+.||.+++.+|..+|.-.
T Consensus 213 ala~--~edWlvCGgG-p~lslwhLrsse~t~vfpip 246 (325)
T KOG0649|consen 213 ALAV--NEDWLVCGGG-PKLSLWHLRSSESTCVFPIP 246 (325)
T ss_pred EEec--cCceEEecCC-CceeEEeccCCCceEEEecc
Confidence 6654 4567777654 47899999988887776543
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=9.7e-08 Score=101.06 Aligned_cols=138 Identities=14% Similarity=0.102 Sum_probs=102.0
Q ss_pred ccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEee-cCCCCCeeEEEEcCCCCEEEEEeCCCcE
Q 006229 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI-PASTSKVESCHFSPDGKLLATGGHDKKA 579 (655)
Q Consensus 501 ~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l-~gH~~~V~sl~fSpdG~lLaSgs~DgtV 579 (655)
.|...++||++|+.|..+++|.....- . ..+.+++... .-|.+.|.|++|....+.|++|+.+++|
T Consensus 63 qFS~N~~~L~SGGDD~~~~~W~~de~~------~-------~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 63 QFSHNDRFLASGGDDMHGRVWNVDELM------V-------RKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred eeccCCeEEeecCCcceeeeechHHHH------h-------hcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 456678999999999999999543220 0 0111233322 2456889999999989999999999999
Q ss_pred EEEeCCCCeEEEEecccC---CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEec
Q 006229 580 VLWCTESFTVKSTLEEHT---QWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAP 654 (655)
Q Consensus 580 rIWDl~t~~~l~tl~gH~---~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P 654 (655)
.+.|+++...+..+. |. +.|+.+..+|..+.|++.+.|+.|.+||.+.......+.|... ....+.++-|||
T Consensus 130 I~HDiEt~qsi~V~~-~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN--~~~~F~t~~F~P 204 (609)
T KOG4227|consen 130 IKHDIETKQSIYVAN-ENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPAN--SGKNFYTAEFHP 204 (609)
T ss_pred Eeeecccceeeeeec-ccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecC--CCccceeeeecC
Confidence 999999999888775 44 4899999999999999999999999999986542222222111 223456777877
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.67 E-value=6.3e-08 Score=70.40 Aligned_cols=39 Identities=36% Similarity=0.548 Sum_probs=37.3
Q ss_pred CeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 006229 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (655)
Q Consensus 587 ~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWD 625 (655)
++++.++.+|...|++|+|+|++.+|+|+|.|++|+|||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 468899999999999999999999999999999999998
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.2e-07 Score=95.84 Aligned_cols=90 Identities=18% Similarity=0.320 Sum_probs=72.8
Q ss_pred eEEeecCCCCCeeEEEEcCCCCEEEEEeC-CCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 006229 547 EFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (655)
Q Consensus 547 ~v~~l~gH~~~V~sl~fSpdG~lLaSgs~-DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWD 625 (655)
.+...++| ..|+++.|.+||..|++++. |..|+|||++++.++....---+.++-+.|+||+.+|+.++.|+..+||.
T Consensus 188 qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~ 266 (445)
T KOG2139|consen 188 QVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQ 266 (445)
T ss_pred hheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeeh
Confidence 44555677 68999999999999999985 57899999999987765544567899999999999999999999999994
Q ss_pred C-CCCeEEEEEec
Q 006229 626 T-ENVRKLTFICC 637 (655)
Q Consensus 626 l-~tg~~v~~l~~ 637 (655)
. .+..+.+.+.+
T Consensus 267 e~q~wt~erw~lg 279 (445)
T KOG2139|consen 267 ENQSWTKERWILG 279 (445)
T ss_pred hcccceecceecc
Confidence 4 45555554443
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.2e-07 Score=100.93 Aligned_cols=87 Identities=21% Similarity=0.300 Sum_probs=75.0
Q ss_pred eecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe-cccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 006229 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (655)
Q Consensus 550 ~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl-~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~t 628 (655)
.+-||-+-|+.|+|+||++.|+|+..|.+|||-.....-.+.+| -||+..|..++.-++ ..|+|||.|++|++||+++
T Consensus 146 ~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~s 224 (390)
T KOG3914|consen 146 PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITS 224 (390)
T ss_pred hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEeccc
Confidence 44589999999999999999999999999999877665555555 589999999998764 5699999999999999999
Q ss_pred CeEEEEEec
Q 006229 629 VRKLTFICC 637 (655)
Q Consensus 629 g~~v~~l~~ 637 (655)
|++++++..
T Consensus 225 gk~L~t~dl 233 (390)
T KOG3914|consen 225 GKLLDTCDL 233 (390)
T ss_pred CCcccccch
Confidence 999976543
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.1e-07 Score=96.84 Aligned_cols=144 Identities=15% Similarity=0.184 Sum_probs=106.6
Q ss_pred CCceEEEEecCCCCcccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCee
Q 006229 480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE 559 (655)
Q Consensus 480 ~d~s~l~ws~dg~~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~ 559 (655)
.+.+++.|+.|+. .++.+.....|.++..... ..++...++..|...|+
T Consensus 11 ~pitchAwn~drt---------------~iAv~~~~~evhiy~~~~~----------------~~w~~~htls~Hd~~vt 59 (361)
T KOG1523|consen 11 EPITCHAWNSDRT---------------QIAVSPNNHEVHIYSMLGA----------------DLWEPAHTLSEHDKIVT 59 (361)
T ss_pred CceeeeeecCCCc---------------eEEeccCCceEEEEEecCC----------------CCceeceehhhhCccee
Confidence 4678888998876 3455555556666622211 12467788999999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeC-CCC--eEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEe
Q 006229 560 SCHFSPDGKLLATGGHDKKAVLWCT-ESF--TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFIC 636 (655)
Q Consensus 560 sl~fSpdG~lLaSgs~DgtVrIWDl-~t~--~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~ 636 (655)
+|+|+|.++.|++|+.|+...||.. ..+ +..-.+..|...+++|.|+|.++.+|+||.-+.|.||=.+...-- .+.
T Consensus 60 gvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdW-WVs 138 (361)
T KOG1523|consen 60 GVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDW-WVS 138 (361)
T ss_pred EEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccce-ehh
Confidence 9999999999999999999999998 333 445566789999999999999999999999999999987643221 122
Q ss_pred cccceeeeeceeeEEEecC
Q 006229 637 CYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 637 ~~~~~v~s~~Vss~~F~P~ 655 (655)
.|-..-....|.++.|||+
T Consensus 139 KhikkPirStv~sldWhpn 157 (361)
T KOG1523|consen 139 KHIKKPIRSTVTSLDWHPN 157 (361)
T ss_pred hhhCCccccceeeeeccCC
Confidence 2222223455778999985
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.7e-07 Score=97.43 Aligned_cols=80 Identities=26% Similarity=0.315 Sum_probs=73.0
Q ss_pred EeecCCCCCeeEEEEcCCCCEEEEEeCCCc-EEEEeCCCCeEEEEeccc--CCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 006229 549 QLIPASTSKVESCHFSPDGKLLATGGHDKK-AVLWCTESFTVKSTLEEH--TQWITDVRFSPSLSRLATSSADRTVRVWD 625 (655)
Q Consensus 549 ~~l~gH~~~V~sl~fSpdG~lLaSgs~Dgt-VrIWDl~t~~~l~tl~gH--~~~ItsVafsPdg~~LaSgS~DgtVrVWD 625 (655)
..+.+|.+.|.|++.+-+|.++||+|..|| |||||..+|+.+..++.- ...|+|++|+|+..+||.+|+.|||+|+.
T Consensus 175 ~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~ 254 (346)
T KOG2111|consen 175 SIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFS 254 (346)
T ss_pred eEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEE
Confidence 567799999999999999999999999987 899999999999999633 34699999999999999999999999999
Q ss_pred CCC
Q 006229 626 TEN 628 (655)
Q Consensus 626 l~t 628 (655)
++.
T Consensus 255 l~~ 257 (346)
T KOG2111|consen 255 LRD 257 (346)
T ss_pred eec
Confidence 875
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.8e-08 Score=104.82 Aligned_cols=140 Identities=15% Similarity=0.186 Sum_probs=107.0
Q ss_pred CCCceEEEEecCCCCcc------cccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeec
Q 006229 479 ASSKSLLMFGSDGMGSL------TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP 552 (655)
Q Consensus 479 S~d~s~l~ws~dg~~~l------asss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~ 552 (655)
...+++.+|+-.|+... .+...+|-+.--+|++++..+-++--++..| ..|..+.
T Consensus 188 AQK~y~yvYD~~GtElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~G-------------------klVa~~~ 248 (545)
T KOG1272|consen 188 AQKKYVYVYDNNGTELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTG-------------------KLVASIR 248 (545)
T ss_pred hhhceEEEecCCCcEEeehhhcCchhhhcccchhheeeecccCCceEEEeechh-------------------hhhHHHH
Confidence 35678888888884321 2223344555455667766665555444333 4455555
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE
Q 006229 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKL 632 (655)
Q Consensus 553 gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v 632 (655)
.-.+.+..++-+|-...+-+|...|+|.+|...+.+++..+.-|.+.|.+|++.++|+|+||.+.|..|+|||+|+...+
T Consensus 249 t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql 328 (545)
T KOG1272|consen 249 TGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQL 328 (545)
T ss_pred ccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccccc
Confidence 55677888888998889999999999999999998988888899999999999999999999999999999999988777
Q ss_pred EEEec
Q 006229 633 TFICC 637 (655)
Q Consensus 633 ~~l~~ 637 (655)
+++..
T Consensus 329 ~t~~t 333 (545)
T KOG1272|consen 329 HTYRT 333 (545)
T ss_pred ceeec
Confidence 66654
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.6e-07 Score=98.00 Aligned_cols=100 Identities=19% Similarity=0.248 Sum_probs=81.5
Q ss_pred CCCCeeEEEEcCCC----CEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCC
Q 006229 554 STSKVESCHFSPDG----KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTEN 628 (655)
Q Consensus 554 H~~~V~sl~fSpdG----~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg-~~LaSgS~DgtVrVWDl~t 628 (655)
|......|+|+-|. .+||.||.-|.|||.|+.++++...+.||...|+.|.|+|+. .+|+|+|.|.+||+||+++
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~ 167 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT 167 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence 55566778887632 389999999999999999999999999999999999999975 6899999999999999999
Q ss_pred CeEEEEEecccceeeeeceeeEEEecC
Q 006229 629 VRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 629 g~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
..|+..|.+-.. +...|-++.|+++
T Consensus 168 ~~Cv~VfGG~eg--HrdeVLSvD~~~~ 192 (385)
T KOG1034|consen 168 DVCVAVFGGVEG--HRDEVLSVDFSLD 192 (385)
T ss_pred CeEEEEeccccc--ccCcEEEEEEcCC
Confidence 999998854221 2333446777654
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=7.1e-07 Score=96.50 Aligned_cols=152 Identities=14% Similarity=0.145 Sum_probs=112.6
Q ss_pred CCceeccCCCCceEEEEecCCCCcccccCc----------ccCCCCc-EEEeccCCCcEEEEecCCCCCCCCcccccccc
Q 006229 471 RPTLQHNGASSKSLLMFGSDGMGSLTSAPN----------QLTDMDR-FVDDGSLDDNVESFLSPDDADPRDRVGRSAEV 539 (655)
Q Consensus 471 ~~~~~~s~S~d~s~l~ws~dg~~~lasss~----------~l~~~~~-~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~ 539 (655)
...++.+++.++.+.+|..||.....+.+. .|.+.+. .+++++.-.-..+|+....+
T Consensus 224 ~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak------------ 291 (514)
T KOG2055|consen 224 TAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK------------ 291 (514)
T ss_pred CCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc------------
Confidence 335778888999999999999644333322 3344444 44555444455555433221
Q ss_pred CCCceeeeEEeecCCC-CCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCC
Q 006229 540 GKGFTFTEFQLIPAST-SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD 618 (655)
Q Consensus 540 ~~~~t~~~v~~l~gH~-~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~D 618 (655)
+..+....++. ..+..+.+|+++++|+..|..|.|.|....|++.+.+++ -.+.|.+++|+.+++.|+.++.+
T Consensus 292 -----~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~ 365 (514)
T KOG2055|consen 292 -----VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGT 365 (514)
T ss_pred -----cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCC
Confidence 12233333443 346788899999999999999999999999999999887 77899999999999999999999
Q ss_pred CcEEEEECCCCeEEEEEecccc
Q 006229 619 RTVRVWDTENVRKLTFICCYKC 640 (655)
Q Consensus 619 gtVrVWDl~tg~~v~~l~~~~~ 640 (655)
|.|.+||++...|++.+...++
T Consensus 366 GeV~v~nl~~~~~~~rf~D~G~ 387 (514)
T KOG2055|consen 366 GEVYVWNLRQNSCLHRFVDDGS 387 (514)
T ss_pred ceEEEEecCCcceEEEEeecCc
Confidence 9999999999999998875443
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.9e-07 Score=98.50 Aligned_cols=153 Identities=13% Similarity=0.069 Sum_probs=98.0
Q ss_pred eeccCCCCceEEEEecCCCC-------cccccCcccCCCCcEEEeccCCCcEEEEecCCCC-------CCCCcccccccc
Q 006229 474 LQHNGASSKSLLMFGSDGMG-------SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDA-------DPRDRVGRSAEV 539 (655)
Q Consensus 474 ~~~s~S~d~s~l~ws~dg~~-------~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~-------d~~d~~~~l~d~ 539 (655)
.+..++.|+...+.+..+.. .-++.+.+....+.-|.+.+.||.|++| +.+|. ......---|+.
T Consensus 77 ~~~i~s~DGkf~il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiW-SrsGMLRStl~Q~~~~v~c~~W~p 155 (737)
T KOG1524|consen 77 TLLICSNDGRFVILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIW-SRSGMLRSTVVQNEESIRCARWAP 155 (737)
T ss_pred eEEEEcCCceEEEecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEE-eccchHHHHHhhcCceeEEEEECC
Confidence 34444555666666555521 1123333555555667788899999999 33332 000000011222
Q ss_pred CCCce---------------eeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEE
Q 006229 540 GKGFT---------------FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVR 604 (655)
Q Consensus 540 ~~~~t---------------~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVa 604 (655)
.+... -..+-..++|.+-|.||+|++...++++||+|.+.+|||-- |..+.+-..|+.+|++|+
T Consensus 156 ~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva 234 (737)
T KOG1524|consen 156 NSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVA 234 (737)
T ss_pred CCCceEEecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccceeeee
Confidence 21110 11244567899999999999999999999999999999975 566667778999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCe
Q 006229 605 FSPSLSRLATSSADRTVRVWDTENVR 630 (655)
Q Consensus 605 fsPdg~~LaSgS~DgtVrVWDl~tg~ 630 (655)
|.|+ +.++.+|.. ++|+=..+.|.
T Consensus 235 ~npd-~~~~v~S~n-t~R~~~p~~GS 258 (737)
T KOG1524|consen 235 FNPE-KDYLLWSYN-TARFSSPRVGS 258 (737)
T ss_pred eccc-cceeeeeee-eeeecCCCccc
Confidence 9999 667777664 66654444443
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.1e-07 Score=95.56 Aligned_cols=110 Identities=17% Similarity=0.186 Sum_probs=88.6
Q ss_pred ccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEE
Q 006229 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV 580 (655)
Q Consensus 501 ~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVr 580 (655)
+..+....|++|+.|++..+|...++ .+++..-.+..|+..++||.|+|.++.||+||..+.|.
T Consensus 62 dWap~snrIvtcs~drnayVw~~~~~----------------~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~is 125 (361)
T KOG1523|consen 62 DWAPKSNRIVTCSHDRNAYVWTQPSG----------------GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLIS 125 (361)
T ss_pred eecCCCCceeEccCCCCccccccCCC----------------CeeccceeEEEeccceeeEeecCcCceEEeccCccEEE
Confidence 44455567889999999999954333 34556666777889999999999999999999999999
Q ss_pred EEeCCCCe----EEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 006229 581 LWCTESFT----VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (655)
Q Consensus 581 IWDl~t~~----~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl 626 (655)
||-++... ..++-+.+...|++++|+|++-+|+.||.|+.+||+..
T Consensus 126 Vcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSa 175 (361)
T KOG1523|consen 126 VCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSA 175 (361)
T ss_pred EEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEE
Confidence 99876432 23334568899999999999999999999999999964
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.8e-06 Score=89.97 Aligned_cols=87 Identities=24% Similarity=0.182 Sum_probs=72.1
Q ss_pred CCCEEEE-EeCCCcEEEEeCCCCeE--EEEecccCCCEEEEEEcCCCCEEEEEeCCCc-EEEEECCCCeEEEEEecccce
Q 006229 566 DGKLLAT-GGHDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSPSLSRLATSSADRT-VRVWDTENVRKLTFICCYKCI 641 (655)
Q Consensus 566 dG~lLaS-gs~DgtVrIWDl~t~~~--l~tl~gH~~~ItsVafsPdg~~LaSgS~Dgt-VrVWDl~tg~~v~~l~~~~~~ 641 (655)
+..+||. |-.-|.|.|-|+...+. -..+.+|...|.||+++-+|.+|||+|..|| |||||.++|+.+..++-+..
T Consensus 147 ~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d- 225 (346)
T KOG2111|consen 147 NKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVD- 225 (346)
T ss_pred CceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCc-
Confidence 3335555 44568999999976655 3678899999999999999999999999998 99999999999999875543
Q ss_pred eeeeceeeEEEecC
Q 006229 642 FVSTAIGSCFFAPT 655 (655)
Q Consensus 642 v~s~~Vss~~F~P~ 655 (655)
...|.+++|+|+
T Consensus 226 --~A~iy~iaFSp~ 237 (346)
T KOG2111|consen 226 --RADIYCIAFSPN 237 (346)
T ss_pred --hheEEEEEeCCC
Confidence 556889999986
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.52 E-value=8.3e-07 Score=103.55 Aligned_cols=163 Identities=12% Similarity=0.096 Sum_probs=112.8
Q ss_pred eeccCCCCceEEEEecCCCCccc----------ccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCc
Q 006229 474 LQHNGASSKSLLMFGSDGMGSLT----------SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGF 543 (655)
Q Consensus 474 ~~~s~S~d~s~l~ws~dg~~~la----------sss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~ 543 (655)
.+...+.-+.+.+|+.+.+..++ .+-..--.++..++.|..||.|++|+..-..
T Consensus 1179 ~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~---------------- 1242 (1387)
T KOG1517|consen 1179 HLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAP---------------- 1242 (1387)
T ss_pred eEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCC----------------
Confidence 34445557889999998743221 1111112335789999999999999654331
Q ss_pred eeeeEEeecCCCCC--eeEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeEEE--EecccC--C-CEEEEEEcCCCCEEEEE
Q 006229 544 TFTEFQLIPASTSK--VESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKS--TLEEHT--Q-WITDVRFSPSLSRLATS 615 (655)
Q Consensus 544 t~~~v~~l~gH~~~--V~sl~fSpdG~-lLaSgs~DgtVrIWDl~t~~~l~--tl~gH~--~-~ItsVafsPdg~~LaSg 615 (655)
....+...+.|+.. |..+.+-+.|- .|++|+.||.|++||++...... ++..|. + .++++..+++...||||
T Consensus 1243 ~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsG 1322 (1387)
T KOG1517|consen 1243 PDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASG 1322 (1387)
T ss_pred ccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeec
Confidence 01345666778877 99999998665 59999999999999998743222 223343 3 59999999999999999
Q ss_pred eCCCcEEEEECCCCeEEEEEecccc--eeeeeceeeEEEec
Q 006229 616 SADRTVRVWDTENVRKLTFICCYKC--IFVSTAIGSCFFAP 654 (655)
Q Consensus 616 S~DgtVrVWDl~tg~~v~~l~~~~~--~v~s~~Vss~~F~P 654 (655)
+. +.|+|||+. |+.+..+..... ......+++++|||
T Consensus 1323 s~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP 1361 (1387)
T KOG1517|consen 1323 SA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHP 1361 (1387)
T ss_pred Cc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecc
Confidence 99 999999997 555555543322 12334468899998
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.9e-07 Score=98.44 Aligned_cols=142 Identities=16% Similarity=0.172 Sum_probs=103.6
Q ss_pred ceeccCCCCceEEEEecCC---------CCcccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCc
Q 006229 473 TLQHNGASSKSLLMFGSDG---------MGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGF 543 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg---------~~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~ 543 (655)
..+...+.++.+.+|+... .+.+..++.++..+..++|+||..|-|.+|+-.+.- ...
T Consensus 357 k~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~-------------~s~ 423 (514)
T KOG2055|consen 357 KELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCF-------------AST 423 (514)
T ss_pred cEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhh-------------ccC
Confidence 3444444455666676654 222333444556777899999999999999433221 112
Q ss_pred eeeeEEeecCCCCCeeEEEEcCCCCEEEEEeC--CCcEEEEeCCCCeEEEEecc---cCCCEEEEEEcCCCCEEEEEeCC
Q 006229 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGH--DKKAVLWCTESFTVKSTLEE---HTQWITDVRFSPSLSRLATSSAD 618 (655)
Q Consensus 544 t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~--DgtVrIWDl~t~~~l~tl~g---H~~~ItsVafsPdg~~LaSgS~D 618 (655)
..+++.++..-+..|+++.|++|+.+||.+|. +..+|+-.+.+......|.. --+.|+||+|+|.+.+||.|-.+
T Consensus 424 ~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~ 503 (514)
T KOG2055|consen 424 NPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEA 503 (514)
T ss_pred CCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCC
Confidence 23456666666778999999999999988875 56799999998887777753 33569999999999999999999
Q ss_pred CcEEEEECC
Q 006229 619 RTVRVWDTE 627 (655)
Q Consensus 619 gtVrVWDl~ 627 (655)
|.|.||.+.
T Consensus 504 grv~l~kL~ 512 (514)
T KOG2055|consen 504 GRVHLFKLH 512 (514)
T ss_pred CceeeEeec
Confidence 999999874
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.2e-07 Score=95.25 Aligned_cols=126 Identities=12% Similarity=0.156 Sum_probs=92.6
Q ss_pred cEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcC--CCCEEEEEeCCCcEEEEeC
Q 006229 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLWCT 584 (655)
Q Consensus 507 ~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSp--dG~lLaSgs~DgtVrIWDl 584 (655)
..++++...++|++++...+ ..+..+++|...++.+.|.. .+..+.+|+.||+||+||+
T Consensus 41 ~~vav~lSngsv~lyd~~tg-------------------~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~ 101 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTG-------------------QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDI 101 (376)
T ss_pred eeEEEEecCCeEEEEeccch-------------------hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEe
Confidence 56788888899999954433 45677788888899999987 4668999999999999999
Q ss_pred CCCeEEE--EecccC-CCEEEEEEcCCCCEEEEEeC----CCcEEEEECCCCeE-EEEEecccceeeeeceeeEEEecC
Q 006229 585 ESFTVKS--TLEEHT-QWITDVRFSPSLSRLATSSA----DRTVRVWDTENVRK-LTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 585 ~t~~~l~--tl~gH~-~~ItsVafsPdg~~LaSgS~----DgtVrVWDl~tg~~-v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
++..... .+..|. ....|++..-.+..+++|.. |-.|.+||+|.... +..+.. .+.-+|..+.|||+
T Consensus 102 Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~e----SH~DDVT~lrFHP~ 176 (376)
T KOG1188|consen 102 RSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNE----SHNDDVTQLRFHPS 176 (376)
T ss_pred ecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhh----hccCcceeEEecCC
Confidence 9865443 445666 34556665546677777764 77899999998765 443321 23456778999995
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.8e-06 Score=91.99 Aligned_cols=91 Identities=19% Similarity=0.232 Sum_probs=82.3
Q ss_pred eeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEE-ecccCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 006229 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST-LEEHTQWITDVRFSPSLSRLATSSADRTVRV 623 (655)
Q Consensus 545 ~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~t-l~gH~~~ItsVafsPdg~~LaSgS~DgtVrV 623 (655)
.++|..+.-...+|+|+...|+|++|++|..-+.+..+|+++++.+.. +.|-++.|++|..+|.+.+|++||-|+.|||
T Consensus 237 RRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRI 316 (412)
T KOG3881|consen 237 RRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRI 316 (412)
T ss_pred CcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEE
Confidence 356777777788999999999999999999999999999999998877 8999999999999999999999999999999
Q ss_pred EECCCCeEEEEE
Q 006229 624 WDTENVRKLTFI 635 (655)
Q Consensus 624 WDl~tg~~v~~l 635 (655)
+|+.+...++.+
T Consensus 317 hD~ktrkll~kv 328 (412)
T KOG3881|consen 317 HDIKTRKLLHKV 328 (412)
T ss_pred eecccchhhhhh
Confidence 999997666543
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.4e-06 Score=88.81 Aligned_cols=97 Identities=22% Similarity=0.282 Sum_probs=72.3
Q ss_pred CCCCeeEEEEcC-CCC--EEEEEeCCCcEEEEeCCCCeEE----------EEecccC-----------------------
Q 006229 554 STSKVESCHFSP-DGK--LLATGGHDKKAVLWCTESFTVK----------STLEEHT----------------------- 597 (655)
Q Consensus 554 H~~~V~sl~fSp-dG~--lLaSgs~DgtVrIWDl~t~~~l----------~tl~gH~----------------------- 597 (655)
..+.|.|..|.. +++ +|+.|-++|.|.+||+.++..+ .....|.
T Consensus 149 Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dk 228 (323)
T KOG0322|consen 149 KLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDK 228 (323)
T ss_pred ccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcccc
Confidence 456788888655 444 6677788999999999875221 1111222
Q ss_pred -----------------------CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEec
Q 006229 598 -----------------------QWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAP 654 (655)
Q Consensus 598 -----------------------~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P 654 (655)
..|..|++.||++.+||++.|++||||+-++...+..+..|+. .|.+++|+|
T Consensus 229 l~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsa-----gvn~vAfsp 303 (323)
T KOG0322|consen 229 LVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSA-----GVNAVAFSP 303 (323)
T ss_pred ceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhc-----ceeEEEeCC
Confidence 2355667788999999999999999999999999988887764 466889998
Q ss_pred C
Q 006229 655 T 655 (655)
Q Consensus 655 ~ 655 (655)
+
T Consensus 304 d 304 (323)
T KOG0322|consen 304 D 304 (323)
T ss_pred C
Confidence 5
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.8e-07 Score=99.62 Aligned_cols=129 Identities=18% Similarity=0.255 Sum_probs=90.3
Q ss_pred ccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEE
Q 006229 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV 580 (655)
Q Consensus 501 ~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVr 580 (655)
.-.+.+-.+..|...|+|.+|-.... ..+..+-.|.++|.+|++.++|+|+||.|.|..|+
T Consensus 258 ~qNP~NaVih~GhsnGtVSlWSP~sk-------------------ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~k 318 (545)
T KOG1272|consen 258 KQNPYNAVIHLGHSNGTVSLWSPNSK-------------------EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVK 318 (545)
T ss_pred hcCCccceEEEcCCCceEEecCCCCc-------------------chHHHHHhcCCCcceEEECCCCcEEeeccccccee
Confidence 33666678899999999999933222 34445568999999999999999999999999999
Q ss_pred EEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEE-CCCC--eEEEEEecccceeeeeceeeEEEec
Q 006229 581 LWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD-TENV--RKLTFICCYKCIFVSTAIGSCFFAP 654 (655)
Q Consensus 581 IWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWD-l~tg--~~v~~l~~~~~~v~s~~Vss~~F~P 654 (655)
|||++....+.++.. ......++||-.| ++.+|..-.|.||. .-.+ .+-.-+..|.. ...|.++.|+|
T Consensus 319 IWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~---~~~V~~l~FcP 389 (545)
T KOG1272|consen 319 IWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRC---GGPVEDLRFCP 389 (545)
T ss_pred Eeeeccccccceeec-CCCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhcc---Ccccccceecc
Confidence 999999887766654 4566778887443 44455555899994 3332 22222222322 22566777776
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.46 E-value=7.1e-07 Score=98.99 Aligned_cols=82 Identities=18% Similarity=0.237 Sum_probs=66.3
Q ss_pred eeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCE-EEEEeCCCcEE
Q 006229 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR-LATSSADRTVR 622 (655)
Q Consensus 544 t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~-LaSgS~DgtVr 622 (655)
...+-..+++|++.|.||..+|.|.||++|+.||+||||.+.||+|+.++. ..+.|.||+|+|.+.. |+.++.+.++.
T Consensus 389 Pt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ 467 (733)
T KOG0650|consen 389 PTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVL 467 (733)
T ss_pred cceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceE
Confidence 345667789999999999999999999999999999999999999999987 6679999999997653 33333333455
Q ss_pred EEEC
Q 006229 623 VWDT 626 (655)
Q Consensus 623 VWDl 626 (655)
|-+.
T Consensus 468 ivnp 471 (733)
T KOG0650|consen 468 IVNP 471 (733)
T ss_pred EeCc
Confidence 5543
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=98.46 E-value=9.4e-07 Score=90.97 Aligned_cols=103 Identities=21% Similarity=0.257 Sum_probs=84.2
Q ss_pred cEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCC
Q 006229 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE 585 (655)
Q Consensus 507 ~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSp-dG~lLaSgs~DgtVrIWDl~ 585 (655)
.+|++|+.|+-|++|+.... ..++.++.+|+--|.+|.|+| ...+|+|||.|..|.+|+..
T Consensus 228 ~~lvt~gDdgyvriWD~R~t------------------k~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~ 289 (370)
T KOG1007|consen 228 HILVTCGDDGYVRIWDTRKT------------------KFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCAS 289 (370)
T ss_pred EEEEEcCCCccEEEEeccCC------------------CccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecc
Confidence 56899999999999966554 246788899999999999999 55699999999999999642
Q ss_pred CC-----------------------------eEEEEecccCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECC
Q 006229 586 SF-----------------------------TVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTE 627 (655)
Q Consensus 586 t~-----------------------------~~l~tl~gH~~~ItsVafsPdg~-~LaSgS~DgtVrVWDl~ 627 (655)
+- -.+.++..|++.|++++|+.-.. .+||-|.||+|.|=.+.
T Consensus 290 svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 290 SVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 10 12457888999999999998655 57899999999887664
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.45 E-value=5.6e-07 Score=65.32 Aligned_cols=38 Identities=29% Similarity=0.543 Sum_probs=36.4
Q ss_pred eeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 006229 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 583 (655)
Q Consensus 546 ~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWD 583 (655)
+++.++.+|.+.|.+|+|+|++.+|++|+.|++|+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 57889999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=6.5e-07 Score=104.51 Aligned_cols=135 Identities=16% Similarity=0.184 Sum_probs=102.5
Q ss_pred ceeccCCCCceEEEEecCCCCccc--------ccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCce
Q 006229 473 TLQHNGASSKSLLMFGSDGMGSLT--------SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFT 544 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~~la--------sss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t 544 (655)
-....++....+++|.+....... +....+.-.++++++.|.|.++|+|...+....
T Consensus 146 ~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~--------------- 210 (967)
T KOG0974|consen 146 LYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVL--------------- 210 (967)
T ss_pred EEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeeccccccc---------------
Confidence 455667777888889887422111 111122345588999999999999965554210
Q ss_pred eeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCC-CEEEEEEcCCCCEEEEEeCCCcEEE
Q 006229 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ-WITDVRFSPSLSRLATSSADRTVRV 623 (655)
Q Consensus 545 ~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~-~ItsVafsPdg~~LaSgS~DgtVrV 623 (655)
.....+|+..|..|+|+|. +|+|++.|.++++|+... +.+.++++|.. .|+.++..++...++|++.|+++|+
T Consensus 211 ---~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~-~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~ 284 (967)
T KOG0974|consen 211 ---GCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNG-TQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKL 284 (967)
T ss_pred ---CcccccccceeEEEEeccc--eeEEeccceEEEEEeccc-ceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhh
Confidence 0244589999999999988 999999999999997654 55558888875 5999999999999999999999999
Q ss_pred EECCC
Q 006229 624 WDTEN 628 (655)
Q Consensus 624 WDl~t 628 (655)
||+..
T Consensus 285 ~~l~~ 289 (967)
T KOG0974|consen 285 WDLNG 289 (967)
T ss_pred hhhhc
Confidence 99875
|
|
| >PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.1e-07 Score=63.28 Aligned_cols=27 Identities=41% Similarity=0.685 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHhc
Q 006229 10 KMLDVYIYDYLLKRKLHASAKAFQTEG 36 (655)
Q Consensus 10 ~~L~~yIydyl~k~~~~~tA~~f~~e~ 36 (655)
+.||.+|||||+++|+.+||++|.+|+
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 479999999999999999999999995
|
The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.8e-07 Score=101.81 Aligned_cols=70 Identities=24% Similarity=0.422 Sum_probs=64.5
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 006229 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (655)
Q Consensus 557 ~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~ 627 (655)
.|..++|-|||.-|+.+.. ..+.|||+..|..+.+++||.+.|+||+|+.||+++|||+.|+.|.||+-.
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k 83 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK 83 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccc
Confidence 5889999999997777664 568899999999999999999999999999999999999999999999865
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.9e-06 Score=99.46 Aligned_cols=125 Identities=15% Similarity=0.159 Sum_probs=90.0
Q ss_pred ccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEE
Q 006229 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV 580 (655)
Q Consensus 501 ~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVr 580 (655)
...+++.++++||.||+|++|+...-. ..+.+.+..-++.-....|.++.+.+.+..+|.++.||.|+
T Consensus 1056 ~s~~~~s~FvsgS~DGtVKvW~~~k~~------------~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~ 1123 (1431)
T KOG1240|consen 1056 VSSEHTSLFVSGSDDGTVKVWNLRKLE------------GEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVR 1123 (1431)
T ss_pred ecCCCCceEEEecCCceEEEeeehhhh------------cCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEE
Confidence 336677899999999999999665441 11233344444444567788888888899999999999999
Q ss_pred EEeCCCC-------------------eEE----------------------------------EEe--cccCCCEEEEEE
Q 006229 581 LWCTESF-------------------TVK----------------------------------STL--EEHTQWITDVRF 605 (655)
Q Consensus 581 IWDl~t~-------------------~~l----------------------------------~tl--~gH~~~ItsVaf 605 (655)
+.+++.. ..+ -++ ..-.+.|++++.
T Consensus 1124 ~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~i 1203 (1431)
T KOG1240|consen 1124 VLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVI 1203 (1431)
T ss_pred EEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEe
Confidence 8876530 000 000 012467999999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCeEEEEEec
Q 006229 606 SPSLSRLATSSADRTVRVWDTENVRKLTFICC 637 (655)
Q Consensus 606 sPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~ 637 (655)
+|.+.++++|+.-|.+-+||+|=+..+..+..
T Consensus 1204 dp~~~WlviGts~G~l~lWDLRF~~~i~sw~~ 1235 (1431)
T KOG1240|consen 1204 DPWCNWLVIGTSRGQLVLWDLRFRVPILSWEH 1235 (1431)
T ss_pred cCCceEEEEecCCceEEEEEeecCceeecccC
Confidence 99999999999999999999997776665543
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=5.6e-07 Score=95.45 Aligned_cols=91 Identities=20% Similarity=0.249 Sum_probs=77.7
Q ss_pred EeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCC------CCeEEEEec-ccCCCEEEEEEcCCCCEEEEEeCCCcE
Q 006229 549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE------SFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTV 621 (655)
Q Consensus 549 ~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~------t~~~l~tl~-gH~~~ItsVafsPdg~~LaSgS~DgtV 621 (655)
+.+.+|.+-|.+|.||.++++|++|+.|..++||+++ +.+++.... .|...|.|++|...+++|+||..|++|
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 4557899999999999999999999999999999985 335565554 355899999999999999999999999
Q ss_pred EEEECCCCeEEEEEeccc
Q 006229 622 RVWDTENVRKLTFICCYK 639 (655)
Q Consensus 622 rVWDl~tg~~v~~l~~~~ 639 (655)
.+-|+.+...+..+....
T Consensus 130 I~HDiEt~qsi~V~~~~~ 147 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENN 147 (609)
T ss_pred EeeecccceeeeeecccC
Confidence 999999988887765443
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.5e-06 Score=92.04 Aligned_cols=125 Identities=19% Similarity=0.252 Sum_probs=90.4
Q ss_pred CCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 006229 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (655)
Q Consensus 503 ~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIW 582 (655)
.+....+++++.|+.|++|+ +. -..+..+ -..++.|++|+|.| .+|.|...|..-|.
T Consensus 377 hps~~q~~T~gqdk~v~lW~--~~---------------k~~wt~~-----~~d~~~~~~fhpsg-~va~Gt~~G~w~V~ 433 (626)
T KOG2106|consen 377 HPSKNQLLTCGQDKHVRLWN--DH---------------KLEWTKI-----IEDPAECADFHPSG-VVAVGTATGRWFVL 433 (626)
T ss_pred CCChhheeeccCcceEEEcc--CC---------------ceeEEEE-----ecCceeEeeccCcc-eEEEeeccceEEEE
Confidence 44446678888999999994 11 1111111 23678899999999 99999999999999
Q ss_pred eCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC-CCeEEEEEecccceeeeeceeeEEEecC
Q 006229 583 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE-NVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 583 Dl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~-tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
|+++-..+..-. ....+++|+|+|+|.+||.||.|+.|+||-+. ++..+..+..++. ..|..+.|++|
T Consensus 434 d~e~~~lv~~~~-d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~g----s~ithLDwS~D 502 (626)
T KOG2106|consen 434 DTETQDLVTIHT-DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSG----SPITHLDWSSD 502 (626)
T ss_pred ecccceeEEEEe-cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecC----ceeEEeeecCC
Confidence 999855554333 38899999999999999999999999999986 4444433322221 34566777764
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.42 E-value=6.2e-07 Score=99.43 Aligned_cols=126 Identities=18% Similarity=0.225 Sum_probs=100.1
Q ss_pred CceEEEEecCC--------CCcccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeec
Q 006229 481 SKSLLMFGSDG--------MGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP 552 (655)
Q Consensus 481 d~s~l~ws~dg--------~~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~ 552 (655)
.+.+.+|+... ++...+++..+++.++-|..|+.|+.+++|+..-+ -++.++++
T Consensus 586 q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldls------------------skPyk~lr 647 (733)
T KOG0650|consen 586 QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLS------------------SKPYKTLR 647 (733)
T ss_pred ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccC------------------cchhHHhh
Confidence 35566666554 33344556677888889999999999988843222 14677888
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCC------C---CeEEEEecccCCC----EEEEEEcCCCCEEEEEeCCC
Q 006229 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE------S---FTVKSTLEEHTQW----ITDVRFSPSLSRLATSSADR 619 (655)
Q Consensus 553 gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~------t---~~~l~tl~gH~~~----ItsVafsPdg~~LaSgS~Dg 619 (655)
-|...|++|+||+.-.+|++|+.|+++.|+.-. . --.+..|.||... |.+++|+|.-.+|+|++.||
T Consensus 648 ~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~ 727 (733)
T KOG0650|consen 648 LHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADG 727 (733)
T ss_pred hhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCc
Confidence 999999999999999999999999999998532 1 1356788899876 99999999999999999999
Q ss_pred cEEEE
Q 006229 620 TVRVW 624 (655)
Q Consensus 620 tVrVW 624 (655)
+||||
T Consensus 728 tirlf 732 (733)
T KOG0650|consen 728 TIRLF 732 (733)
T ss_pred eEEee
Confidence 99999
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=5.1e-06 Score=92.35 Aligned_cols=95 Identities=15% Similarity=0.086 Sum_probs=88.1
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE
Q 006229 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRK 631 (655)
Q Consensus 552 ~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~ 631 (655)
..|.+.|.++-++.+-..|.|++.|+.|.+|+..++..++.+.+-...+.+++.+|||..|+++|. .|++||+++++.
T Consensus 99 ~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as~--~ik~~~~~~kev 176 (541)
T KOG4547|consen 99 DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTASR--QIKVLDIETKEV 176 (541)
T ss_pred CCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEeccc--eEEEEEccCceE
Confidence 368999999999999999999999999999999999999999999999999999999999999874 799999999999
Q ss_pred EEEEecccceeeeecee
Q 006229 632 LTFICCYKCIFVSTAIG 648 (655)
Q Consensus 632 v~~l~~~~~~v~s~~Vs 648 (655)
+.+|++|...+.+..|.
T Consensus 177 v~~ftgh~s~v~t~~f~ 193 (541)
T KOG4547|consen 177 VITFTGHGSPVRTLSFT 193 (541)
T ss_pred EEEecCCCcceEEEEEE
Confidence 99999999887766554
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.3e-06 Score=89.30 Aligned_cols=149 Identities=19% Similarity=0.245 Sum_probs=99.9
Q ss_pred EEEecCCCCcccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEc
Q 006229 485 LMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFS 564 (655)
Q Consensus 485 l~ws~dg~~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fS 564 (655)
..|+|||. -|.+-+.|..+.+|..+.+...+..-..+ ..... ..++. -....|..++|-
T Consensus 55 ckWSPDGS---------------ciL~~sedn~l~~~nlP~dlys~~~~~~~-~~~~~---~~~r~--~eg~tvydy~wY 113 (406)
T KOG2919|consen 55 CKWSPDGS---------------CILSLSEDNCLNCWNLPFDLYSKKADGPL-NFSKH---LSYRY--QEGETVYDYCWY 113 (406)
T ss_pred ceeCCCCc---------------eEEeecccCeeeEEecChhhcccCCCCcc-ccccc---eeEEe--ccCCEEEEEEee
Confidence 46888887 45566789999999766543222111100 00000 11222 223568888886
Q ss_pred -------CCCCEEEEEeCCCcEEEEeCCCCeEEEEecc--cCCC---EEEEEEcCCCCEEEEEeCCCcEEEEEC-CCCeE
Q 006229 565 -------PDGKLLATGGHDKKAVLWCTESFTVKSTLEE--HTQW---ITDVRFSPSLSRLATSSADRTVRVWDT-ENVRK 631 (655)
Q Consensus 565 -------pdG~lLaSgs~DgtVrIWDl~t~~~l~tl~g--H~~~---ItsVafsPdg~~LaSgS~DgtVrVWDl-~tg~~ 631 (655)
|+..++++.+.|.-|++||.-+|+....+.+ |-+. -.||+|+|||..|+.| ...+|||+|+ |.|..
T Consensus 114 s~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~ 192 (406)
T KOG2919|consen 114 SRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRD 192 (406)
T ss_pred eccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCC
Confidence 6778999999999999999999999888864 4444 4589999999999876 6679999999 55543
Q ss_pred E--EEEecccceeeeeceeeEEEecC
Q 006229 632 L--TFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 632 v--~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
. .+...+........+++++|+|.
T Consensus 193 c~vy~t~~~~k~gq~giisc~a~sP~ 218 (406)
T KOG2919|consen 193 CPVYTTVTKGKFGQKGIISCFAFSPM 218 (406)
T ss_pred CcchhhhhcccccccceeeeeeccCC
Confidence 2 22223334444667888999984
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.1e-06 Score=100.24 Aligned_cols=98 Identities=18% Similarity=0.176 Sum_probs=73.4
Q ss_pred CCCccccccccCCCceeeeEEeec-CCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCC---eEEEEecccCCC--EE
Q 006229 529 PRDRVGRSAEVGKGFTFTEFQLIP-ASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESF---TVKSTLEEHTQW--IT 601 (655)
Q Consensus 529 ~~d~~~~l~d~~~~~t~~~v~~l~-gH~~~V~sl~fSp-dG~lLaSgs~DgtVrIWDl~t~---~~l~tl~gH~~~--It 601 (655)
++.+++++||..+... +..+. +....|+++.-+- .|..|+.|..||.||+||.+.. ..+...+.|.+. |.
T Consensus 1184 Gd~r~IRIWDa~~E~~---~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv 1260 (1387)
T KOG1517|consen 1184 GDVRSIRIWDAHKEQV---VADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIV 1260 (1387)
T ss_pred CCeeEEEEEeccccee---EeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccce
Confidence 3456667777776532 22222 2334466654443 5789999999999999998754 357788899998 99
Q ss_pred EEEEcCCCCE-EEEEeCCCcEEEEECCCC
Q 006229 602 DVRFSPSLSR-LATSSADRTVRVWDTENV 629 (655)
Q Consensus 602 sVafsPdg~~-LaSgS~DgtVrVWDl~tg 629 (655)
.+.+.+.|-. |+|||.||.|++||+|..
T Consensus 1261 ~~slq~~G~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1261 HLSLQRQGLGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred eEEeecCCCcceeeeccCCeEEEEecccC
Confidence 9999997755 999999999999999973
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=5.7e-06 Score=92.10 Aligned_cols=69 Identities=23% Similarity=0.231 Sum_probs=53.2
Q ss_pred eeEEEEcCCCCEEEEEe-CCCcEEEE--eCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECC
Q 006229 558 VESCHFSPDGKLLATGG-HDKKAVLW--CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTE 627 (655)
Q Consensus 558 V~sl~fSpdG~lLaSgs-~DgtVrIW--Dl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS-~DgtVrVWDl~ 627 (655)
+.+++|+|||++|+.++ .|+.+.|| |+.++.. ..+..|...+++++|+|||+.|+.++ .++.++||++.
T Consensus 250 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~ 322 (429)
T PRK01742 250 NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMS 322 (429)
T ss_pred cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEE
Confidence 34789999999888765 68876665 6666554 46677888899999999999877655 57888999875
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=4.3e-06 Score=96.38 Aligned_cols=125 Identities=20% Similarity=0.264 Sum_probs=99.8
Q ss_pred ccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCC
Q 006229 497 SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD 576 (655)
Q Consensus 497 sss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~D 576 (655)
....++.+.++++++|-.||.|.+|.-.... .+. ...+.+.=|...|.++.|++||.+|+|||.+
T Consensus 208 ~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~------------~~~---~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E 272 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGDSDGRILVWRDFGSS------------DDS---ETCTLLHWHHDEVNSLSFSSDGAYLLSGGRE 272 (792)
T ss_pred ceeEEeccccceEEEeccCCcEEEEeccccc------------ccc---ccceEEEecccccceeEEecCCceEeecccc
Confidence 3445778899999999999999999433210 011 2234566788999999999999999999999
Q ss_pred CcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEec
Q 006229 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICC 637 (655)
Q Consensus 577 gtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~ 637 (655)
+.+.+|.+.+++ ..-|..-...|..+.++||+.+.+....|..|.+-...+.+...++.+
T Consensus 273 ~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsg 332 (792)
T KOG1963|consen 273 GVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISG 332 (792)
T ss_pred eEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccC
Confidence 999999999988 445666788999999999999999999999999998866554444433
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=4.2e-06 Score=93.13 Aligned_cols=88 Identities=18% Similarity=0.032 Sum_probs=67.0
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC--CCCeEEEEEe
Q 006229 559 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT--ENVRKLTFIC 636 (655)
Q Consensus 559 ~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl--~tg~~v~~l~ 636 (655)
.++.|+|||++|+.++.++. .+||+.+++.......+ ...++.|+|+|++|++++.|+.+++|++ .++.++..+.
T Consensus 336 ~~~~~SpDG~~ia~~~~~~i-~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~ 412 (429)
T PRK01742 336 YSAQISADGKTLVMINGDNV-VKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLP 412 (429)
T ss_pred CCccCCCCCCEEEEEcCCCE-EEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEcc
Confidence 46789999999988887764 45999988765333332 3467889999999999999999998886 3688888887
Q ss_pred cccceeeeeceeeEEEec
Q 006229 637 CYKCIFVSTAIGSCFFAP 654 (655)
Q Consensus 637 ~~~~~v~s~~Vss~~F~P 654 (655)
.+.. .+...+|+|
T Consensus 413 ~~~g-----~~~~p~wsp 425 (429)
T PRK01742 413 GSDG-----QVKFPAWSP 425 (429)
T ss_pred CCCC-----CCCCcccCC
Confidence 5543 245678887
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.29 E-value=6.1e-06 Score=85.32 Aligned_cols=105 Identities=25% Similarity=0.248 Sum_probs=79.2
Q ss_pred eeeEEeecCCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCC-CCeEEEE-ecccCCCEEEEEEcC-CCCEEEEEeCCCc
Q 006229 545 FTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE-SFTVKST-LEEHTQWITDVRFSP-SLSRLATSSADRT 620 (655)
Q Consensus 545 ~~~v~~l~gH~~~V~sl~fSp-dG~lLaSgs~DgtVrIWDl~-t~~~l~t-l~gH~~~ItsVafsP-dg~~LaSgS~Dgt 620 (655)
.+.+..++.|.-.+.-+.|+. +.+++++||.|+.++.||++ ..+.+-. .+-|+..|.+|.-+| ...+|+||+.|-.
T Consensus 155 le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~ 234 (339)
T KOG0280|consen 155 LEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDEC 234 (339)
T ss_pred eeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccc
Confidence 345667889999999999987 56799999999999999999 3344433 456999999998886 5779999999999
Q ss_pred EEEEECCC-CeEEEEEecccceeeeeceeeEEEecC
Q 006229 621 VRVWDTEN-VRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 621 VrVWDl~t-g~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
|++||.|+ ++.+..-. ...-|..+.+||.
T Consensus 235 i~~~DtRnm~kPl~~~~------v~GGVWRi~~~p~ 264 (339)
T KOG0280|consen 235 IRVLDTRNMGKPLFKAK------VGGGVWRIKHHPE 264 (339)
T ss_pred eeeeehhcccCccccCc------cccceEEEEecch
Confidence 99999995 33332111 1234666777763
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.6e-05 Score=85.38 Aligned_cols=111 Identities=19% Similarity=0.143 Sum_probs=79.2
Q ss_pred EEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 006229 508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF 587 (655)
Q Consensus 508 ~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~ 587 (655)
++++-..++.|.+.+... .+.+.++......-..+.|++||+++++++.|+.|.++|+.+.
T Consensus 8 ~~V~~~~~~~v~viD~~t-------------------~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~ 68 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGAT-------------------NKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATG 68 (369)
T ss_dssp EEEEEGGGTEEEEEETTT--------------------SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSS
T ss_pred EEEEecCCCEEEEEECCC-------------------CeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcc
Confidence 345555677888874333 2456666654443455789999999999999999999999999
Q ss_pred eEEEEecccCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeEEEEEecc
Q 006229 588 TVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENVRKLTFICCY 638 (655)
Q Consensus 588 ~~l~tl~gH~~~ItsVafsPdg~~LaSgS-~DgtVrVWDl~tg~~v~~l~~~ 638 (655)
+.+.++.... ...++++++||+++++++ .++.|.|+|.++.+.+..+...
T Consensus 69 ~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~ 119 (369)
T PF02239_consen 69 KVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTG 119 (369)
T ss_dssp SEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--
T ss_pred cEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccc
Confidence 9999987443 467899999999988776 5899999999999999887654
|
... |
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.22 E-value=7.9e-06 Score=93.15 Aligned_cols=81 Identities=19% Similarity=0.255 Sum_probs=65.8
Q ss_pred EEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCC-CCeEEEEecccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEE
Q 006229 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE-SFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWD 625 (655)
Q Consensus 548 v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~-t~~~l~tl~gH~~~ItsVafsPdg-~~LaSgS~DgtVrVWD 625 (655)
+..+..|.++|+++.++|=+..++..+.|-+||||... ...++..+..+.+.|++++|||.. ..++++..||.|.|||
T Consensus 391 ~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWD 470 (555)
T KOG1587|consen 391 HSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWD 470 (555)
T ss_pred cccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhh
Confidence 34555688999999999965544444449999999988 667788888899999999999965 4677888899999999
Q ss_pred CCC
Q 006229 626 TEN 628 (655)
Q Consensus 626 l~t 628 (655)
+..
T Consensus 471 Ll~ 473 (555)
T KOG1587|consen 471 LLQ 473 (555)
T ss_pred hhc
Confidence 963
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.18 E-value=6.5e-05 Score=82.44 Aligned_cols=134 Identities=16% Similarity=0.202 Sum_probs=92.3
Q ss_pred CCceeccCCCCceEEEEecCCCCcc------cccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCce
Q 006229 471 RPTLQHNGASSKSLLMFGSDGMGSL------TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFT 544 (655)
Q Consensus 471 ~~~~~~s~S~d~s~l~ws~dg~~~l------asss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t 544 (655)
......+++.++.+.+|+ +..-.. ......|++.+ .|+.|...+..-+.+.. +
T Consensus 379 s~~q~~T~gqdk~v~lW~-~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e-------------------~ 437 (626)
T KOG2106|consen 379 SKNQLLTCGQDKHVRLWN-DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTE-------------------T 437 (626)
T ss_pred ChhheeeccCcceEEEcc-CCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecc-------------------c
Confidence 336778888999999999 321110 01122445555 66777665554333221 1
Q ss_pred eeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC-CeEEEEe-cccCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 006229 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTL-EEHTQWITDVRFSPSLSRLATSSADRTVR 622 (655)
Q Consensus 545 ~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t-~~~l~tl-~gH~~~ItsVafsPdg~~LaSgS~DgtVr 622 (655)
...+..... +..++++.|+|||.+||.|++|+.|.||.+.. ++..... +-|-..|+.+.|++|+.+|.+-|-|..|.
T Consensus 438 ~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiL 516 (626)
T KOG2106|consen 438 QDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEIL 516 (626)
T ss_pred ceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEE
Confidence 123333333 78999999999999999999999999998864 3333222 22338999999999999999999999999
Q ss_pred EEEC
Q 006229 623 VWDT 626 (655)
Q Consensus 623 VWDl 626 (655)
.|..
T Consensus 517 yW~~ 520 (626)
T KOG2106|consen 517 YWKP 520 (626)
T ss_pred EEcc
Confidence 9943
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=3e-05 Score=86.33 Aligned_cols=113 Identities=20% Similarity=0.217 Sum_probs=84.1
Q ss_pred EEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 006229 508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF 587 (655)
Q Consensus 508 ~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~ 587 (655)
.+.+++.|..|..|...+. ..++.++.....|.+++.+|||+.|++|+ +.|++||+++.
T Consensus 116 ciyS~~ad~~v~~~~~~~~-------------------~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~k 174 (541)
T KOG4547|consen 116 CIYSVGADLKVVYILEKEK-------------------VIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETK 174 (541)
T ss_pred ceEecCCceeEEEEecccc-------------------eeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCc
Confidence 3556666666666643332 55667777788899999999999999987 69999999999
Q ss_pred eEEEEecccCCCEEEEEEcCC-----CCEEEEE-eCCCcEEEEECCC----CeEEEEEecccce
Q 006229 588 TVKSTLEEHTQWITDVRFSPS-----LSRLATS-SADRTVRVWDTEN----VRKLTFICCYKCI 641 (655)
Q Consensus 588 ~~l~tl~gH~~~ItsVafsPd-----g~~LaSg-S~DgtVrVWDl~t----g~~v~~l~~~~~~ 641 (655)
+.+.+|.||.+.|+++.|--+ |.++.++ ..+.-|.+|-++. ....+.+.+.+..
T Consensus 175 evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~kkks~~~sl~~~dip 238 (541)
T KOG4547|consen 175 EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDKKKSLSCSLTVPDIP 238 (541)
T ss_pred eEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcccccchhheeeccCCCC
Confidence 999999999999999999876 6665554 4566788887764 2333444444433
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=5.7e-05 Score=84.18 Aligned_cols=79 Identities=18% Similarity=0.150 Sum_probs=58.9
Q ss_pred cCCCCCeeEEEEcCCCCEEE-EEeCCCc--EEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeC-CC--cEEEEE
Q 006229 552 PASTSKVESCHFSPDGKLLA-TGGHDKK--AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DR--TVRVWD 625 (655)
Q Consensus 552 ~gH~~~V~sl~fSpdG~lLa-Sgs~Dgt--VrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~-Dg--tVrVWD 625 (655)
..+.+.+.+.+|+|||+.|+ +.+.|+. |.+||+.++... .+..|...+++.+|+|||++|+..+. ++ .|.+||
T Consensus 242 ~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d 320 (435)
T PRK05137 242 GNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMN 320 (435)
T ss_pred ecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEE
Confidence 34556678899999998665 5566655 777798887654 56667777888999999999887774 33 588889
Q ss_pred CCCCeE
Q 006229 626 TENVRK 631 (655)
Q Consensus 626 l~tg~~ 631 (655)
+.++..
T Consensus 321 ~~g~~~ 326 (435)
T PRK05137 321 ADGSNP 326 (435)
T ss_pred CCCCCe
Confidence 876544
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=5.6e-05 Score=80.61 Aligned_cols=115 Identities=15% Similarity=0.238 Sum_probs=72.0
Q ss_pred cCCCCcEE-EeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeC-CCcE
Q 006229 502 LTDMDRFV-DDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKA 579 (655)
Q Consensus 502 l~~~~~~L-asGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~-DgtV 579 (655)
+.+.++++ ++...++.|.+|+...... +. .... ..+.... ......+.|+|||++|+++.. +++|
T Consensus 133 ~~p~g~~l~v~~~~~~~v~v~d~~~~g~-------l~-~~~~---~~~~~~~--g~~p~~~~~~pdg~~lyv~~~~~~~v 199 (330)
T PRK11028 133 IDPDNRTLWVPCLKEDRIRLFTLSDDGH-------LV-AQEP---AEVTTVE--GAGPRHMVFHPNQQYAYCVNELNSSV 199 (330)
T ss_pred eCCCCCEEEEeeCCCCEEEEEEECCCCc-------cc-ccCC---CceecCC--CCCCceEEECCCCCEEEEEecCCCEE
Confidence 44455555 4555678899996543210 00 0000 0011111 133568999999999988876 8999
Q ss_pred EEEeCCC--C--eEEEEeccc------CCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCC
Q 006229 580 VLWCTES--F--TVKSTLEEH------TQWITDVRFSPSLSRLATSSA-DRTVRVWDTENV 629 (655)
Q Consensus 580 rIWDl~t--~--~~l~tl~gH------~~~ItsVafsPdg~~LaSgS~-DgtVrVWDl~tg 629 (655)
.+||++. + +.+.++..+ ......+.|+|++++|+++.. +++|.+|++...
T Consensus 200 ~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~ 260 (330)
T PRK11028 200 DVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSED 260 (330)
T ss_pred EEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCC
Confidence 9999973 3 334444322 223346899999999999864 789999999643
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.9e-05 Score=90.05 Aligned_cols=102 Identities=25% Similarity=0.258 Sum_probs=74.3
Q ss_pred CCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeE--EE----EecccCCCEEEEEEcCCC--CEEEEEeCCCcEEEE
Q 006229 554 STSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTV--KS----TLEEHTQWITDVRFSPSL--SRLATSSADRTVRVW 624 (655)
Q Consensus 554 H~~~V~sl~fSp-dG~lLaSgs~DgtVrIWDl~t~~~--l~----tl~gH~~~ItsVafsPdg--~~LaSgS~DgtVrVW 624 (655)
....|+|++|+| +..+|+.|+.+|.|.+||++.+.. .. ....|...|+.|.|-.+- .-++|+|.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 357899999999 788999999999999999986644 22 123689999999997654 449999999999999
Q ss_pred ECCCCeEEEEEec-------ccceeeeeceeeEEEecC
Q 006229 625 DTENVRKLTFICC-------YKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 625 Dl~tg~~v~~l~~-------~~~~v~s~~Vss~~F~P~ 655 (655)
+++...+...... +.....+..+.++.|+|.
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~ 358 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPT 358 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccC
Confidence 9986554221111 122234455677777763
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=5.3e-05 Score=80.77 Aligned_cols=110 Identities=16% Similarity=0.186 Sum_probs=70.2
Q ss_pred cCCCCcEEEecc-CCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEe-CCCcE
Q 006229 502 LTDMDRFVDDGS-LDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG-HDKKA 579 (655)
Q Consensus 502 l~~~~~~LasGS-~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs-~DgtV 579 (655)
+.+.++++.+++ .++.|.+|...... .....+..+.+ ...+.+++|+|+|++|++++ .++.|
T Consensus 87 ~~~~g~~l~v~~~~~~~v~v~~~~~~g---------------~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v 150 (330)
T PRK11028 87 TDHQGRFLFSASYNANCVSVSPLDKDG---------------IPVAPIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRI 150 (330)
T ss_pred ECCCCCEEEEEEcCCCeEEEEEECCCC---------------CCCCceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEE
Confidence 345556665554 37788888553211 00011222222 23466789999999876554 56999
Q ss_pred EEEeCCCCeEEE-------EecccCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCC
Q 006229 580 VLWCTESFTVKS-------TLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTEN 628 (655)
Q Consensus 580 rIWDl~t~~~l~-------tl~gH~~~ItsVafsPdg~~LaSgS~-DgtVrVWDl~t 628 (655)
++||+++...+. .+. .......+.|+|++++|+++.. +++|.+||+..
T Consensus 151 ~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~ 206 (330)
T PRK11028 151 RLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKD 206 (330)
T ss_pred EEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeC
Confidence 999997633221 111 1234678999999999988876 99999999973
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=7.5e-05 Score=76.62 Aligned_cols=97 Identities=15% Similarity=0.131 Sum_probs=76.9
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEeCCCC--eEEE-EecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 006229 558 VESCHFSPDGKLLATGGHDKKAVLWCTESF--TVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTF 634 (655)
Q Consensus 558 V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~--~~l~-tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~ 634 (655)
+.++++++|++|+++.+....|-+|.++.. ..++ .....++.=.+..|+.....+|+++.||++.|||+|...-...
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~ 240 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMA 240 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchh
Confidence 789999999999999999999999987542 3333 3344556678899999999999999999999999997665555
Q ss_pred EecccceeeeeceeeEEEec
Q 006229 635 ICCYKCIFVSTAIGSCFFAP 654 (655)
Q Consensus 635 l~~~~~~v~s~~Vss~~F~P 654 (655)
.......-+..+|..|.|+|
T Consensus 241 ~~sstrp~hnGa~R~c~Fsl 260 (344)
T KOG4532|consen 241 EISSTRPHHNGAFRVCRFSL 260 (344)
T ss_pred hhcccCCCCCCceEEEEecC
Confidence 44444555777888899886
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.6e-05 Score=86.46 Aligned_cols=75 Identities=16% Similarity=0.349 Sum_probs=62.3
Q ss_pred CCCeeEEEEcCCCCEEEEEeCC---CcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeC------CCcEEEEE
Q 006229 555 TSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA------DRTVRVWD 625 (655)
Q Consensus 555 ~~~V~sl~fSpdG~lLaSgs~D---gtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~------DgtVrVWD 625 (655)
.++=+++-|+|.|++|+.+|.+ |.|-|||+.+.+++..++.- ..+-+.|+|||.+|+|++. |..|+||+
T Consensus 311 egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~--~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwh 388 (566)
T KOG2315|consen 311 EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA--NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWH 388 (566)
T ss_pred CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC--CceEEEEcCCCcEEEEEeccccEEecCCeEEEE
Confidence 4556789999999999998876 78999999999999888744 3456899999999999885 78899999
Q ss_pred CCCCeEE
Q 006229 626 TENVRKL 632 (655)
Q Consensus 626 l~tg~~v 632 (655)
.. |..+
T Consensus 389 yt-G~~l 394 (566)
T KOG2315|consen 389 YT-GSLL 394 (566)
T ss_pred ec-Ccee
Confidence 86 4444
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=5.6e-05 Score=84.26 Aligned_cols=101 Identities=15% Similarity=0.110 Sum_probs=73.0
Q ss_pred EEeecCCCCCeeEEEEcCCCCEEEEEeC---CCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEE-EEeCCCc--E
Q 006229 548 FQLIPASTSKVESCHFSPDGKLLATGGH---DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRT--V 621 (655)
Q Consensus 548 v~~l~gH~~~V~sl~fSpdG~lLaSgs~---DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~La-SgS~Dgt--V 621 (655)
.+.+..|...|.+..|+|||+.|+..+. +..|.+||+.+++.. .+..+.+.+.+.+|+|||+.|+ +.+.|+. |
T Consensus 194 ~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~I 272 (435)
T PRK05137 194 VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDI 272 (435)
T ss_pred cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceE
Confidence 3445677888999999999998888764 468999999988664 4556777888999999998765 6666665 7
Q ss_pred EEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 622 RVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 622 rVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
.+||+.++... .+..+.. ...+..|+||
T Consensus 273 y~~d~~~~~~~-~Lt~~~~-----~~~~~~~spD 300 (435)
T PRK05137 273 YTMDLRSGTTT-RLTDSPA-----IDTSPSYSPD 300 (435)
T ss_pred EEEECCCCceE-EccCCCC-----ccCceeEcCC
Confidence 77799877653 3433322 1234566664
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.6e-05 Score=86.61 Aligned_cols=125 Identities=15% Similarity=0.233 Sum_probs=89.4
Q ss_pred ccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCC-----CCeeEEEEcCCCCEEEEEeC
Q 006229 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST-----SKVESCHFSPDGKLLATGGH 575 (655)
Q Consensus 501 ~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~-----~~V~sl~fSpdG~lLaSgs~ 575 (655)
.+.....+|++|..|+.|..|+..+-. ++.. ......+..|. ..|+++.|+.||-.+++|..
T Consensus 182 ~in~~hgLla~Gt~~g~VEfwDpR~ks----rv~~---------l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts 248 (703)
T KOG2321|consen 182 SINEEHGLLACGTEDGVVEFWDPRDKS----RVGT---------LDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS 248 (703)
T ss_pred eecCccceEEecccCceEEEecchhhh----hhee---------eecccccCCCccccccCcceEEEecCCceeEEeecc
Confidence 456666889999999999999766542 1111 11111222232 34999999999999999999
Q ss_pred CCcEEEEeCCCCeEEEEec-ccCCCEEEEEEcCCC--CEEEEEeCCCcEEEEECCCCeEEEEEeccc
Q 006229 576 DKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSL--SRLATSSADRTVRVWDTENVRKLTFICCYK 639 (655)
Q Consensus 576 DgtVrIWDl~t~~~l~tl~-gH~~~ItsVafsPdg--~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~ 639 (655)
+|.|.|||+++.+++..-. +..-.|..+.|-+.+ ..|+|. ....+||||-.+|+....+....
T Consensus 249 ~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~ 314 (703)
T KOG2321|consen 249 TGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPTS 314 (703)
T ss_pred CCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccccC
Confidence 9999999999988774432 345678999998763 445554 34479999999998887766543
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.07 E-value=9.8e-06 Score=82.63 Aligned_cols=73 Identities=27% Similarity=0.411 Sum_probs=63.8
Q ss_pred CCeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCe-EEEEecccCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCC
Q 006229 556 SKVESCHFSP-DGKLLATGGHDKKAVLWCTESFT-VKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTEN 628 (655)
Q Consensus 556 ~~V~sl~fSp-dG~lLaSgs~DgtVrIWDl~t~~-~l~tl~gH~~~ItsVafsP-dg~~LaSgS~DgtVrVWDl~t 628 (655)
..|.+++-+| ...++++|+.||.|-|||.+... +...+..|+..|+-|-|+| ++..|+|++.||.+-.||..+
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 3499999999 56689999999999999998764 4456689999999999999 567899999999999999884
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=4.8e-05 Score=84.74 Aligned_cols=82 Identities=18% Similarity=0.128 Sum_probs=55.4
Q ss_pred eecCCCCCeeEEEEcCCCCEEEEEeC-CCcEEEEeC--CCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCC---cEEE
Q 006229 550 LIPASTSKVESCHFSPDGKLLATGGH-DKKAVLWCT--ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR---TVRV 623 (655)
Q Consensus 550 ~l~gH~~~V~sl~fSpdG~lLaSgs~-DgtVrIWDl--~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~Dg---tVrV 623 (655)
.+..+...+.++.|+|||++|+..+. ++...||.+ .++.... +..+.......+|+|||++|+..+.++ .|.+
T Consensus 278 ~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v 356 (427)
T PRK02889 278 RLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYV 356 (427)
T ss_pred ECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecCCCCcCceEECCCCCEEEEEEccCCcEEEEE
Confidence 34445555677899999998876654 466666654 4544322 222233455789999999998877654 5999
Q ss_pred EECCCCeEE
Q 006229 624 WDTENVRKL 632 (655)
Q Consensus 624 WDl~tg~~v 632 (655)
||+.++...
T Consensus 357 ~d~~~g~~~ 365 (427)
T PRK02889 357 QDLATGQVT 365 (427)
T ss_pred EECCCCCeE
Confidence 999887644
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00016 Score=80.73 Aligned_cols=74 Identities=19% Similarity=0.198 Sum_probs=53.4
Q ss_pred CeeEEEEcCCCCEEEEE-eCCC--cEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCC-CcEEEE--ECCCCe
Q 006229 557 KVESCHFSPDGKLLATG-GHDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-RTVRVW--DTENVR 630 (655)
Q Consensus 557 ~V~sl~fSpdG~lLaSg-s~Dg--tVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~D-gtVrVW--Dl~tg~ 630 (655)
.+.++.|||||+.|+.. +.++ .|.+||+++++... +..+...+...+|+|||+.|+.++.+ +...|| |+.++.
T Consensus 244 ~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~ 322 (429)
T PRK03629 244 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA 322 (429)
T ss_pred CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC
Confidence 35578999999977754 4444 58899999887654 44455678899999999998877764 444555 676654
Q ss_pred E
Q 006229 631 K 631 (655)
Q Consensus 631 ~ 631 (655)
.
T Consensus 323 ~ 323 (429)
T PRK03629 323 P 323 (429)
T ss_pred e
Confidence 3
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.8e-05 Score=83.40 Aligned_cols=137 Identities=16% Similarity=0.117 Sum_probs=100.2
Q ss_pred ccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcC-CCCEEEEEeCCCcE
Q 006229 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKA 579 (655)
Q Consensus 501 ~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSp-dG~lLaSgs~DgtV 579 (655)
.|...+.+|..|+-.+.|-+.+..... .+..+ +...+ -|.+.|+|+..-. ++.+|.+.+.+|+|
T Consensus 259 Qf~~s~nLv~~GcRngeI~~iDLR~rn-------------qG~~~-~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gki 323 (425)
T KOG2695|consen 259 QFAGSDNLVFNGCRNGEIFVIDLRCRN-------------QGNGW-CAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKI 323 (425)
T ss_pred HhcccCCeeEecccCCcEEEEEeeecc-------------cCCCc-ceEEE-EcCcchhhhhhhccccceEeeccCcCce
Confidence 456667889999999998888554431 11111 22222 4778899987666 67889999999999
Q ss_pred EEEeCCCCeE---EEEecccCCCEEEEE--EcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEe
Q 006229 580 VLWCTESFTV---KSTLEEHTQWITDVR--FSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFA 653 (655)
Q Consensus 580 rIWDl~t~~~---l~tl~gH~~~ItsVa--fsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~ 653 (655)
++||.+-.++ +.+++||...-.-+- +.+....|++++.|.-.|||.++.|..+.++.-.... ...++.+++|.
T Consensus 324 kLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~-~e~d~~sv~~~ 401 (425)
T KOG2695|consen 324 KLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSA-SEVDIPSVAFD 401 (425)
T ss_pred eEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCcc-ccccccceehh
Confidence 9999998777 889999976544433 4566788999999999999999999998887655443 33455566664
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00021 Score=79.68 Aligned_cols=76 Identities=20% Similarity=0.151 Sum_probs=56.2
Q ss_pred CCCeeEEEEcCCCCEEE-EEeCCC--cEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeC-CCc--EEEEECCC
Q 006229 555 TSKVESCHFSPDGKLLA-TGGHDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRT--VRVWDTEN 628 (655)
Q Consensus 555 ~~~V~sl~fSpdG~lLa-Sgs~Dg--tVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~-Dgt--VrVWDl~t 628 (655)
.+.+.++.|+|||+.|+ +.+.++ .|.+||+.+++.. .+..|....++++|+|||++|+.++. ++. |.++|+.+
T Consensus 247 ~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~ 325 (433)
T PRK04922 247 RGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASG 325 (433)
T ss_pred CCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 34456889999999665 555555 5999999988754 56667666788999999999887774 555 66677776
Q ss_pred CeE
Q 006229 629 VRK 631 (655)
Q Consensus 629 g~~ 631 (655)
++.
T Consensus 326 g~~ 328 (433)
T PRK04922 326 GSA 328 (433)
T ss_pred CCe
Confidence 654
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.01 E-value=3.2e-05 Score=89.37 Aligned_cols=78 Identities=19% Similarity=0.350 Sum_probs=68.6
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC----CeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 006229 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (655)
Q Consensus 553 gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t----~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~t 628 (655)
.|+-.++|+++||.++++|+|..||.|.||.--. ......|..|.+.|+++.|+++|.+|+||+..|.+-+|.+.+
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T 282 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET 282 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence 4666689999999999999999999999995321 234557789999999999999999999999999999999998
Q ss_pred Ce
Q 006229 629 VR 630 (655)
Q Consensus 629 g~ 630 (655)
++
T Consensus 283 ~~ 284 (792)
T KOG1963|consen 283 GK 284 (792)
T ss_pred CC
Confidence 76
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00014 Score=81.13 Aligned_cols=79 Identities=11% Similarity=0.050 Sum_probs=55.8
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEeCC-CcEEEE--eCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCC---CcEEEEE
Q 006229 552 PASTSKVESCHFSPDGKLLATGGHD-KKAVLW--CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWD 625 (655)
Q Consensus 552 ~gH~~~V~sl~fSpdG~lLaSgs~D-gtVrIW--Dl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~D---gtVrVWD 625 (655)
..+...+..+.|+|||+.|+..+.+ +...|| |+.++... .+..+...+.+++|+|||++|+..+.+ ..|.+||
T Consensus 283 t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~d 361 (429)
T PRK03629 283 TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQD 361 (429)
T ss_pred cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEE
Confidence 3344567889999999988777654 444444 67666543 444445556789999999998877654 3588999
Q ss_pred CCCCeE
Q 006229 626 TENVRK 631 (655)
Q Consensus 626 l~tg~~ 631 (655)
+.++..
T Consensus 362 l~~g~~ 367 (429)
T PRK03629 362 LATGGV 367 (429)
T ss_pred CCCCCe
Confidence 988764
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=8.7e-05 Score=78.74 Aligned_cols=108 Identities=19% Similarity=0.259 Sum_probs=72.8
Q ss_pred eccCCCCceEEEEecCCCCcccccCcccCCCCcEEEeccC-CCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecC
Q 006229 475 QHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSL-DDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA 553 (655)
Q Consensus 475 ~~s~S~d~s~l~ws~dg~~~lasss~~l~~~~~~LasGS~-D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~g 553 (655)
.+++..+.+.+.|+.||. .++++|. |..|.+|++..+. .+.....
T Consensus 191 ~~pgh~pVtsmqwn~dgt---------------~l~tAS~gsssi~iWdpdtg~-------------------~~pL~~~ 236 (445)
T KOG2139|consen 191 QDPGHNPVTSMQWNEDGT---------------ILVTASFGSSSIMIWDPDTGQ-------------------KIPLIPK 236 (445)
T ss_pred eCCCCceeeEEEEcCCCC---------------EEeecccCcceEEEEcCCCCC-------------------ccccccc
Confidence 344445677788888766 4455554 5678888654441 1111123
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEe
Q 006229 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS 616 (655)
Q Consensus 554 H~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS 616 (655)
--+.++-+.|||||.+|+.+..|+..+||..........+.--.+.|...+|+|+|++|+-++
T Consensus 237 glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~ 299 (445)
T KOG2139|consen 237 GLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFAC 299 (445)
T ss_pred CCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEE
Confidence 346788999999999999999999999996543332223333445999999999998755443
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00017 Score=80.42 Aligned_cols=71 Identities=18% Similarity=0.251 Sum_probs=51.7
Q ss_pred CCCeeEEEEcCCCCEEE-EEeCCCcEEEEeC--CCCeEEEEecccCCCEEEEEEcCCCCEEEEEeC-CCcEEEEEC
Q 006229 555 TSKVESCHFSPDGKLLA-TGGHDKKAVLWCT--ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDT 626 (655)
Q Consensus 555 ~~~V~sl~fSpdG~lLa-Sgs~DgtVrIWDl--~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~-DgtVrVWDl 626 (655)
.+.+.++.|+|||+.|+ +.+.|+...||.+ .++. +..+..|...+++..|+|||++|+..+. ++...||.+
T Consensus 239 ~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~ 313 (427)
T PRK02889 239 KGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRM 313 (427)
T ss_pred CCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEE
Confidence 34567899999999776 5677888777754 4443 4566667667788999999998887664 566677755
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00013 Score=81.26 Aligned_cols=82 Identities=12% Similarity=0.095 Sum_probs=56.8
Q ss_pred eecCCCCCeeEEEEcCCCCEEEEEeC-CCc--EEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCC---cEEE
Q 006229 550 LIPASTSKVESCHFSPDGKLLATGGH-DKK--AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR---TVRV 623 (655)
Q Consensus 550 ~l~gH~~~V~sl~fSpdG~lLaSgs~-Dgt--VrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~Dg---tVrV 623 (655)
.+..+...+..++|+|||++|+.++. ++. |.++|+.+++... +..+...+..++|+|||++|+..+.++ .|.+
T Consensus 286 ~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v 364 (433)
T PRK04922 286 RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAV 364 (433)
T ss_pred ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCccCEEECCCCCEEEEEECCCCceeEEE
Confidence 34445555678999999998887764 444 6666777765433 222334456789999999988766443 5999
Q ss_pred EECCCCeEE
Q 006229 624 WDTENVRKL 632 (655)
Q Consensus 624 WDl~tg~~v 632 (655)
||+.++...
T Consensus 365 ~d~~~g~~~ 373 (433)
T PRK04922 365 MDLSTGSVR 373 (433)
T ss_pred EECCCCCeE
Confidence 999887654
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00019 Score=80.15 Aligned_cols=77 Identities=21% Similarity=0.238 Sum_probs=55.1
Q ss_pred CCeeEEEEcCCCCEEEEEe-CCCcEEEEe--CCC-CeEEEEecccCCCEEEEEEcCCCCEEEEEeCC---CcEEEEECCC
Q 006229 556 SKVESCHFSPDGKLLATGG-HDKKAVLWC--TES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTEN 628 (655)
Q Consensus 556 ~~V~sl~fSpdG~lLaSgs-~DgtVrIWD--l~t-~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~D---gtVrVWDl~t 628 (655)
+.+...+|+|||+.|+..+ .++...||. +.. +.....+..+...+.+.+|+|||++|+..+.+ ..|.+||+.+
T Consensus 281 ~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~ 360 (428)
T PRK01029 281 GTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT 360 (428)
T ss_pred CCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC
Confidence 3456789999999777665 467666664 432 23344555566678899999999998877653 3699999998
Q ss_pred CeEE
Q 006229 629 VRKL 632 (655)
Q Consensus 629 g~~v 632 (655)
++..
T Consensus 361 g~~~ 364 (428)
T PRK01029 361 GRDY 364 (428)
T ss_pred CCeE
Confidence 8754
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00047 Score=75.61 Aligned_cols=79 Identities=19% Similarity=0.174 Sum_probs=56.2
Q ss_pred CCCCCeeEEEEcCCCCEEE-EEeCCC--cEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeC-CC--cEEEEEC
Q 006229 553 ASTSKVESCHFSPDGKLLA-TGGHDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DR--TVRVWDT 626 (655)
Q Consensus 553 gH~~~V~sl~fSpdG~lLa-Sgs~Dg--tVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~-Dg--tVrVWDl 626 (655)
.+.+.+.+++|+|||+.|+ +.+.++ .|.+||+.++... .+..|...+...+|+|+|++|+.++. ++ .|.+||+
T Consensus 231 ~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~ 309 (417)
T TIGR02800 231 SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDA 309 (417)
T ss_pred cCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence 3445677899999999665 444444 5888999887544 44456566678899999999887665 33 5888888
Q ss_pred CCCeEE
Q 006229 627 ENVRKL 632 (655)
Q Consensus 627 ~tg~~v 632 (655)
.+++..
T Consensus 310 ~~~~~~ 315 (417)
T TIGR02800 310 DGGEVR 315 (417)
T ss_pred CCCCEE
Confidence 876543
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00058 Score=76.78 Aligned_cols=74 Identities=20% Similarity=0.220 Sum_probs=64.1
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 006229 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (655)
Q Consensus 553 gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~t 628 (655)
...+.|.||+++|+...|+.|+.||.|++||...+... +.-+.-..+.++|+|+|..+++|+.-|.|.+||+.-
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 35678999999999999999999999999999776433 334566789999999999999999999999999873
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.80 E-value=7.8e-05 Score=88.81 Aligned_cols=83 Identities=18% Similarity=0.244 Sum_probs=70.8
Q ss_pred eeEEeecCCCCCeeEEEEcCCC-CEEEEEeCCCcEEEEeCCC-------CeEEEEecccCCCEEEEEEcCCCCEEEEEeC
Q 006229 546 TEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTES-------FTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617 (655)
Q Consensus 546 ~~v~~l~gH~~~V~sl~fSpdG-~lLaSgs~DgtVrIWDl~t-------~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~ 617 (655)
..|..+..|...|..++.+++. .+|+|||.||+|||||++. .++..++......+.+|.+++.+..+|.++.
T Consensus 1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~ 1118 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTK 1118 (1431)
T ss_pred eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcC
Confidence 4678888899999999998854 8999999999999999853 2445555556788999999999999999999
Q ss_pred CCcEEEEECCC
Q 006229 618 DRTVRVWDTEN 628 (655)
Q Consensus 618 DgtVrVWDl~t 628 (655)
||.|++.+++-
T Consensus 1119 DG~v~~~~id~ 1129 (1431)
T KOG1240|consen 1119 DGSVRVLRIDH 1129 (1431)
T ss_pred CCeEEEEEccc
Confidence 99999999874
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00016 Score=80.52 Aligned_cols=87 Identities=17% Similarity=0.285 Sum_probs=71.8
Q ss_pred EeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec------ccCC-----CEEEEEEcCCCCEEEEEeC
Q 006229 549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE------EHTQ-----WITDVRFSPSLSRLATSSA 617 (655)
Q Consensus 549 ~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~------gH~~-----~ItsVafsPdg~~LaSgS~ 617 (655)
..+....+.|++|..++...+|++|+.||.|-+||.++...+.++. .|.. .|++|.|+-+|-.++.|+.
T Consensus 169 ~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts 248 (703)
T KOG2321|consen 169 NPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS 248 (703)
T ss_pred cccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc
Confidence 3444456889999999988899999999999999998776665554 2333 3999999999999999999
Q ss_pred CCcEEEEECCCCeEEEEE
Q 006229 618 DRTVRVWDTENVRKLTFI 635 (655)
Q Consensus 618 DgtVrVWDl~tg~~v~~l 635 (655)
+|.|.|||+++.+.+..-
T Consensus 249 ~G~v~iyDLRa~~pl~~k 266 (703)
T KOG2321|consen 249 TGSVLIYDLRASKPLLVK 266 (703)
T ss_pred CCcEEEEEcccCCceeec
Confidence 999999999987766443
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00058 Score=74.89 Aligned_cols=78 Identities=17% Similarity=0.175 Sum_probs=58.5
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCC-C--cEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCC---cEEEEEC
Q 006229 553 ASTSKVESCHFSPDGKLLATGGHD-K--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR---TVRVWDT 626 (655)
Q Consensus 553 gH~~~V~sl~fSpdG~lLaSgs~D-g--tVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~Dg---tVrVWDl 626 (655)
.+...+.+..|+|||++|+.++.. + .|.+||+.+++.. .+..+...+..++|+|+|++|+.++.++ .|.+||+
T Consensus 275 ~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~ 353 (417)
T TIGR02800 275 NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDL 353 (417)
T ss_pred CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeC
Confidence 344445678999999988766543 3 5778888876644 4444667788899999999999988876 7999999
Q ss_pred CCCeE
Q 006229 627 ENVRK 631 (655)
Q Consensus 627 ~tg~~ 631 (655)
.++..
T Consensus 354 ~~~~~ 358 (417)
T TIGR02800 354 DGGGE 358 (417)
T ss_pred CCCCe
Confidence 87543
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00052 Score=76.64 Aligned_cols=84 Identities=11% Similarity=0.081 Sum_probs=60.6
Q ss_pred ecCCCCCeeEEEEcCCCCEEEEEeCC---CcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeC---CCcEEEE
Q 006229 551 IPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVW 624 (655)
Q Consensus 551 l~gH~~~V~sl~fSpdG~lLaSgs~D---gtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~---DgtVrVW 624 (655)
+..+...+.+..|||||++|+..+.+ ..|.+||+.+++... +......+.+..|+|||++|+..+. +..|.+|
T Consensus 322 lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~v 400 (428)
T PRK01029 322 LTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLI 400 (428)
T ss_pred eccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEEEE
Confidence 34444567789999999988876654 468999999887653 4333456788999999998775443 3468899
Q ss_pred ECCCCeEEEEE
Q 006229 625 DTENVRKLTFI 635 (655)
Q Consensus 625 Dl~tg~~v~~l 635 (655)
|+.+++.....
T Consensus 401 dl~~g~~~~Lt 411 (428)
T PRK01029 401 SLITKKTRKIV 411 (428)
T ss_pred ECCCCCEEEee
Confidence 99887654433
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.78 E-value=5.8e-05 Score=92.59 Aligned_cols=96 Identities=13% Similarity=0.196 Sum_probs=77.6
Q ss_pred CCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCC
Q 006229 530 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 609 (655)
Q Consensus 530 ~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg 609 (655)
.++.+.+||.........|. ..|.+.++|+++.|...+|+|||.+|.|+|||++..+.++++.. ++ ..
T Consensus 2313 d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~ 2380 (2439)
T KOG1064|consen 2313 DNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TR 2380 (2439)
T ss_pred CCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hh
Confidence 34445677766554444555 68999999999999999999999999999999998888877764 44 56
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEEec
Q 006229 610 SRLATSSADRTVRVWDTENVRKLTFICC 637 (655)
Q Consensus 610 ~~LaSgS~DgtVrVWDl~tg~~v~~l~~ 637 (655)
.++++|+..|.|+||++.....++++..
T Consensus 2381 ~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2381 EYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred heeeccCcccceEEEEccccchhhcCch
Confidence 7999999999999999998777766543
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00019 Score=75.93 Aligned_cols=94 Identities=21% Similarity=0.288 Sum_probs=72.1
Q ss_pred eEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCC-----------------------------------------
Q 006229 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE----------------------------------------- 585 (655)
Q Consensus 547 ~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~----------------------------------------- 585 (655)
..+.+..|...|..+.|+-...++++.+.|+.+.--..+
T Consensus 106 ~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~ 185 (404)
T KOG1409|consen 106 FLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQN 185 (404)
T ss_pred hhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeec
Confidence 345566789999999999988999999998876432211
Q ss_pred CCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE-EEEecccc
Q 006229 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKL-TFICCYKC 640 (655)
Q Consensus 586 t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v-~~l~~~~~ 640 (655)
....+.++.+|.+.|++++|.|...+|+||..|..|.+||+-.++-+ ..+.+|..
T Consensus 186 ~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~ 241 (404)
T KOG1409|consen 186 GCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHND 241 (404)
T ss_pred CCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchh
Confidence 12356788899999999999999999999999999999999754433 34444443
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00088 Score=74.33 Aligned_cols=76 Identities=17% Similarity=0.095 Sum_probs=55.6
Q ss_pred CCeeEEEEcCCCCEEE-EEeCCC--cEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeC-CC--cEEEEECCCC
Q 006229 556 SKVESCHFSPDGKLLA-TGGHDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DR--TVRVWDTENV 629 (655)
Q Consensus 556 ~~V~sl~fSpdG~lLa-Sgs~Dg--tVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~-Dg--tVrVWDl~tg 629 (655)
+.+.+..|+|||+.|+ +.+.++ .|.+||+.+++.. .+..+...++...|+|||+.|+..+. ++ .|.+||+.++
T Consensus 243 g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g 321 (430)
T PRK00178 243 GLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGG 321 (430)
T ss_pred CCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 3455789999999776 444555 5888899887654 45666667788999999998776664 33 5778888877
Q ss_pred eEE
Q 006229 630 RKL 632 (655)
Q Consensus 630 ~~v 632 (655)
+..
T Consensus 322 ~~~ 324 (430)
T PRK00178 322 RAE 324 (430)
T ss_pred CEE
Confidence 643
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.73 E-value=8.4e-05 Score=50.29 Aligned_cols=39 Identities=41% Similarity=0.578 Sum_probs=35.5
Q ss_pred CeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 006229 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (655)
Q Consensus 587 ~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWD 625 (655)
+.++..+..|...|++++|++++.++++++.|+.|++||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456778888999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00082 Score=74.55 Aligned_cols=83 Identities=20% Similarity=0.186 Sum_probs=61.0
Q ss_pred EeecCCCCCeeEEEEcCCCCEEEEEeCC---CcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEE-EEeCCC--cEE
Q 006229 549 QLIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADR--TVR 622 (655)
Q Consensus 549 ~~l~gH~~~V~sl~fSpdG~lLaSgs~D---gtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~La-SgS~Dg--tVr 622 (655)
+.+..+...+.+..|||||+.|+..+.+ ..|.+||+.+++... +....+.+.+.+|+|||++|+ +.+.++ .|.
T Consensus 192 ~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy 270 (430)
T PRK00178 192 VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIY 270 (430)
T ss_pred eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEE
Confidence 3444566788999999999988876644 368899999886543 333444566799999999876 555555 588
Q ss_pred EEECCCCeEE
Q 006229 623 VWDTENVRKL 632 (655)
Q Consensus 623 VWDl~tg~~v 632 (655)
+||+.++...
T Consensus 271 ~~d~~~~~~~ 280 (430)
T PRK00178 271 VMDLASRQLS 280 (430)
T ss_pred EEECCCCCeE
Confidence 8899987643
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00045 Score=73.06 Aligned_cols=86 Identities=17% Similarity=0.371 Sum_probs=76.1
Q ss_pred eeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-EEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 006229 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623 (655)
Q Consensus 545 ~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~-~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrV 623 (655)
...+.++.+|.+.|+|+.|.+..++|.+|..|..|.+||+-..+ ....+.+|.+.|..++.-+.-+.|+|++.||.|-+
T Consensus 187 ~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~ 266 (404)
T KOG1409|consen 187 CQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVV 266 (404)
T ss_pred CceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEE
Confidence 35678899999999999999999999999999999999996554 34567899999999999888899999999999999
Q ss_pred EECCCCe
Q 006229 624 WDTENVR 630 (655)
Q Consensus 624 WDl~tg~ 630 (655)
||.....
T Consensus 267 w~mn~~r 273 (404)
T KOG1409|consen 267 WNMNVKR 273 (404)
T ss_pred Eecccee
Confidence 9997543
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00016 Score=88.83 Aligned_cols=127 Identities=17% Similarity=0.180 Sum_probs=92.5
Q ss_pred CCCCcEEEeccCCCcEEEEecCCCC-------C--------------------CCCccccccccCCCceeeeEEeecCCC
Q 006229 503 TDMDRFVDDGSLDDNVESFLSPDDA-------D--------------------PRDRVGRSAEVGKGFTFTEFQLIPAST 555 (655)
Q Consensus 503 ~~~~~~LasGS~D~tV~vW~s~d~~-------d--------------------~~d~~~~l~d~~~~~t~~~v~~l~gH~ 555 (655)
++..-+-.+|+-|+.|++|.+..+. . ..|....+|.+. .+.+...+.|.
T Consensus 2217 Hp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~----pk~~~s~qchn 2292 (2439)
T KOG1064|consen 2217 HPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS----PKPYTSWQCHN 2292 (2439)
T ss_pred CCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC----CcceeccccCC
Confidence 4445667899999999998655443 0 012222333333 24566677788
Q ss_pred CCeeEEEEcCCCCEEEEEe---CCCcEEEEeCCC--C-eEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 006229 556 SKVESCHFSPDGKLLATGG---HDKKAVLWCTES--F-TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENV 629 (655)
Q Consensus 556 ~~V~sl~fSpdG~lLaSgs---~DgtVrIWDl~t--~-~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg 629 (655)
....++.|-. .++++++ .++.|.+||..- + .++. +.|.+.++++++-|...+|+|||.+|.|+|||++..
T Consensus 2293 k~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqr 2368 (2439)
T KOG1064|consen 2293 KALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQR 2368 (2439)
T ss_pred ccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHH
Confidence 8888888874 6778765 468899999742 2 3444 679999999999999999999999999999999987
Q ss_pred eEEEEEec
Q 006229 630 RKLTFICC 637 (655)
Q Consensus 630 ~~v~~l~~ 637 (655)
+.++++..
T Consensus 2369 ql~h~~~~ 2376 (2439)
T KOG1064|consen 2369 QLRHTFQA 2376 (2439)
T ss_pred HHHHHhhh
Confidence 76665543
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0017 Score=73.02 Aligned_cols=74 Identities=19% Similarity=0.168 Sum_probs=53.6
Q ss_pred eeEEEEcCCCCEEEE-EeCCCc--EEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeC-CC--cEEEEECCCCeE
Q 006229 558 VESCHFSPDGKLLAT-GGHDKK--AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DR--TVRVWDTENVRK 631 (655)
Q Consensus 558 V~sl~fSpdG~lLaS-gs~Dgt--VrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~-Dg--tVrVWDl~tg~~ 631 (655)
+.+..|+|||+.|+. .+.++. |.+||+.+++.. .+..|...+...+|+|||++|+..+. ++ .|.++|+.+++.
T Consensus 264 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~ 342 (448)
T PRK04792 264 NGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV 342 (448)
T ss_pred cCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 457899999997764 566665 777788877654 45556667788999999998876654 44 466678877764
Q ss_pred E
Q 006229 632 L 632 (655)
Q Consensus 632 v 632 (655)
.
T Consensus 343 ~ 343 (448)
T PRK04792 343 S 343 (448)
T ss_pred E
Confidence 3
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0013 Score=70.67 Aligned_cols=122 Identities=11% Similarity=0.010 Sum_probs=88.6
Q ss_pred CCCCcEEEeccCC--CcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCC--CCEEEEEeCCCc
Q 006229 503 TDMDRFVDDGSLD--DNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD--GKLLATGGHDKK 578 (655)
Q Consensus 503 ~~~~~~LasGS~D--~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpd--G~lLaSgs~Dgt 578 (655)
.....++++|+.. ..+++|+...+. .+|.......-..--.. .--++++.|-+. ...||++..-+.
T Consensus 158 ~~~p~Iva~GGke~~n~lkiwdle~~~-------qiw~aKNvpnD~L~LrV---PvW~tdi~Fl~g~~~~~fat~T~~hq 227 (412)
T KOG3881|consen 158 DTDPYIVATGGKENINELKIWDLEQSK-------QIWSAKNVPNDRLGLRV---PVWITDIRFLEGSPNYKFATITRYHQ 227 (412)
T ss_pred CCCCceEecCchhcccceeeeecccce-------eeeeccCCCCcccccee---eeeeccceecCCCCCceEEEEeccee
Confidence 3444678889888 788899655442 23322221110000000 012568888886 789999999999
Q ss_pred EEEEeCCCC-eEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 006229 579 AVLWCTESF-TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTF 634 (655)
Q Consensus 579 VrIWDl~t~-~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~ 634 (655)
||+||++.+ +++..|.--+..|+++...|++++|++|-.-+.+..+|++.++.+..
T Consensus 228 vR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~ 284 (412)
T KOG3881|consen 228 VRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGC 284 (412)
T ss_pred EEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeecc
Confidence 999999876 56778877788999999999999999999999999999998876644
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00029 Score=79.43 Aligned_cols=95 Identities=19% Similarity=0.227 Sum_probs=78.2
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEE-EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE
Q 006229 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWIT-DVRFSPSLSRLATSSADRTVRVWDTENVRKLT 633 (655)
Q Consensus 555 ~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~It-sVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~ 633 (655)
...|.-+.|+|.-.+||++..+|.|.+..+. ...+-++.-|...|+ ++||.|||+.||.|=.||+|+|-|+.++..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 4568889999999999999999999998887 677778876777777 99999999999999999999999999998776
Q ss_pred EEecccceeeeeceeeEEEec
Q 006229 634 FICCYKCIFVSTAIGSCFFAP 654 (655)
Q Consensus 634 ~l~~~~~~v~s~~Vss~~F~P 654 (655)
.+ ......+|+++.|.|
T Consensus 99 ~~----~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SF----LFSVETDISKGIWDR 115 (665)
T ss_pred cc----ccccccchheeeccc
Confidence 53 233445566777753
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00032 Score=47.33 Aligned_cols=38 Identities=37% Similarity=0.575 Sum_probs=33.8
Q ss_pred eeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 006229 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 583 (655)
Q Consensus 546 ~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWD 583 (655)
..+..+..|...|.++.|++++.++++++.|+.|++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34566678899999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0045 Score=68.02 Aligned_cols=88 Identities=17% Similarity=0.257 Sum_probs=73.8
Q ss_pred eEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCC----cEE
Q 006229 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR----TVR 622 (655)
Q Consensus 547 ~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~Dg----tVr 622 (655)
++..+...-+.|.++..++||+.++.+.+...|.+.|++++.....=+...+.|+...|+|++++||=+=-+| .|+
T Consensus 393 e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Ik 472 (668)
T COG4946 393 EVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIK 472 (668)
T ss_pred eEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEE
Confidence 4455556668899999999999999999889999999999987766666788999999999999999776665 599
Q ss_pred EEECCCCeEEEE
Q 006229 623 VWDTENVRKLTF 634 (655)
Q Consensus 623 VWDl~tg~~v~~ 634 (655)
|+|+.+++....
T Consensus 473 lydm~~~Kiy~v 484 (668)
T COG4946 473 LYDMDGGKIYDV 484 (668)
T ss_pred EEecCCCeEEEe
Confidence 999998776543
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.41 E-value=9.3e-05 Score=81.70 Aligned_cols=82 Identities=20% Similarity=0.337 Sum_probs=69.5
Q ss_pred eEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCC-------CCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCC
Q 006229 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE-------SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 619 (655)
Q Consensus 547 ~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~-------t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~Dg 619 (655)
.+..+.||..+|..+.--.+.+-+++++.|++|++|.++ +..|-.++..|+..|.++.|-.+.++++|+ |+
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 345678999999998877778899999999999999875 335777889999999999999998888876 89
Q ss_pred cEEEEECCCCe
Q 006229 620 TVRVWDTENVR 630 (655)
Q Consensus 620 tVrVWDl~tg~ 630 (655)
-|.+||.--++
T Consensus 805 giHlWDPFigr 815 (1034)
T KOG4190|consen 805 GIHLWDPFIGR 815 (1034)
T ss_pred cceeecccccc
Confidence 99999975443
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0029 Score=65.99 Aligned_cols=73 Identities=15% Similarity=0.140 Sum_probs=62.0
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE--EecccCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC
Q 006229 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS--TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENV 629 (655)
Q Consensus 557 ~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~--tl~gH~~~ItsVafsP-dg~~LaSgS~DgtVrVWDl~tg 629 (655)
...+++|++.+.-++++-.+|.+.+-+........ ++++|.-.++...|+. +.+.++|||.|+.+..||+|.+
T Consensus 123 ~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p 198 (339)
T KOG0280|consen 123 EALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIP 198 (339)
T ss_pred eeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCC
Confidence 35689999999999999999999977766666555 8899999999999986 4468999999999999999943
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00057 Score=75.70 Aligned_cols=117 Identities=16% Similarity=0.084 Sum_probs=79.6
Q ss_pred cEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 006229 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (655)
Q Consensus 507 ~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t 586 (655)
.-+.++|.|++|++|......|. ..+..+-.++..|+.+|.++.|-.|-+++++ .|+-|.+||.--
T Consensus 748 NSFiSASkDKTVKLWSik~EgD~------------~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~giHlWDPFi 813 (1034)
T KOG4190|consen 748 NSFISASKDKTVKLWSIKPEGDE------------IGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGIHLWDPFI 813 (1034)
T ss_pred cceeeccCCceEEEEEeccccCc------------cccceeeeEhhhccCcccceeeeeccceeee--ccCcceeecccc
Confidence 44568889999999954433221 1123466788999999999999988888765 489999999887
Q ss_pred CeEEEEec--ccCCCEEEEEEcCC--CC-EEEEEeCCCcEEEEECCCCeEEEEEec
Q 006229 587 FTVKSTLE--EHTQWITDVRFSPS--LS-RLATSSADRTVRVWDTENVRKLTFICC 637 (655)
Q Consensus 587 ~~~l~tl~--gH~~~ItsVafsPd--g~-~LaSgS~DgtVrVWDl~tg~~v~~l~~ 637 (655)
++.+..+. ...+.+..|..-++ .. .++-|+...+||++|.+.++-+..+..
T Consensus 814 gr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kV 869 (1034)
T KOG4190|consen 814 GRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKV 869 (1034)
T ss_pred cchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEe
Confidence 77766443 12223333333333 23 344457789999999998876665543
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00037 Score=76.48 Aligned_cols=81 Identities=16% Similarity=0.221 Sum_probs=64.7
Q ss_pred EEeecCCCCCeeEEEEcCCC-CEEEEEeCCCcEEEEeCCCCeEEEEe---cccCC---CEEEEEEcCCCC-EEEEEeCCC
Q 006229 548 FQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTL---EEHTQ---WITDVRFSPSLS-RLATSSADR 619 (655)
Q Consensus 548 v~~l~gH~~~V~sl~fSpdG-~lLaSgs~DgtVrIWDl~t~~~l~tl---~gH~~---~ItsVafsPdg~-~LaSgS~Dg 619 (655)
...+..|.+.|.-++.-|+. +.|.|++.|+.|.-.|++......++ +.+.. ..++++..|... .+++++.|-
T Consensus 225 t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dq 304 (559)
T KOG1334|consen 225 TKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQ 304 (559)
T ss_pred ceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhh
Confidence 45666799999999999954 58999999999999999876543333 33444 578899999766 799999999
Q ss_pred cEEEEECCC
Q 006229 620 TVRVWDTEN 628 (655)
Q Consensus 620 tVrVWDl~t 628 (655)
.+||||.+.
T Consensus 305 f~RvYD~R~ 313 (559)
T KOG1334|consen 305 FARVYDQRR 313 (559)
T ss_pred hhhhhcccc
Confidence 999999985
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0012 Score=70.07 Aligned_cols=137 Identities=16% Similarity=0.233 Sum_probs=87.5
Q ss_pred CCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCC------------CCCeeEEEEcCCCC--
Q 006229 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS------------TSKVESCHFSPDGK-- 568 (655)
Q Consensus 503 ~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH------------~~~V~sl~fSpdG~-- 568 (655)
...+.+|++|..+|.|.+|--..... + .+.....+..| ..+|..+.|.+++.
T Consensus 34 ~~~Ge~LatGdkgGRVv~f~r~~~~~-------------~-ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a 99 (433)
T KOG1354|consen 34 DHYGERLATGDKGGRVVLFEREKLYK-------------G-EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLA 99 (433)
T ss_pred ecccceEeecCCCCeEEEeecccccc-------------c-ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCcc
Confidence 33445899999999999983322211 1 12222333333 34689999998655
Q ss_pred EEEEEeCCCcEEEEeCCCC-----------------------------------eEEEEe-cccCCCEEEEEEcCCCCEE
Q 006229 569 LLATGGHDKKAVLWCTESF-----------------------------------TVKSTL-EEHTQWITDVRFSPSLSRL 612 (655)
Q Consensus 569 lLaSgs~DgtVrIWDl~t~-----------------------------------~~l~tl-~gH~~~ItsVafsPdg~~L 612 (655)
.++....|++|++|-+... .+.+.+ .+|+--|++|.+..|...+
T Consensus 100 ~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~ 179 (433)
T KOG1354|consen 100 EFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETF 179 (433)
T ss_pred EEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceE
Confidence 6777889999999965311 122223 3688899999999999988
Q ss_pred EEEeCCCcEEEEECCC-CeEEEE--EecccceeeeeceeeEEEec
Q 006229 613 ATSSADRTVRVWDTEN-VRKLTF--ICCYKCIFVSTAIGSCFFAP 654 (655)
Q Consensus 613 aSgS~DgtVrVWDl~t-g~~v~~--l~~~~~~v~s~~Vss~~F~P 654 (655)
+|+ .|-.|.||++.- ..+... +..+.-.-..-.|.+.-|||
T Consensus 180 lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp 223 (433)
T KOG1354|consen 180 LSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHP 223 (433)
T ss_pred eec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCH
Confidence 886 688999999873 333333 23332222233466777776
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0011 Score=73.99 Aligned_cols=91 Identities=15% Similarity=0.185 Sum_probs=72.5
Q ss_pred CCCeeEEEEcCCCCEEEE--EeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCC
Q 006229 555 TSKVESCHFSPDGKLLAT--GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENV 629 (655)
Q Consensus 555 ~~~V~sl~fSpdG~lLaS--gs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~D---gtVrVWDl~tg 629 (655)
.++|.++.|+++|+-+++ |-+=.+|.|+|++ +..+..| -++.-+++.|+|.|++|+.++.+ |.|-|||+.+.
T Consensus 270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~ 346 (566)
T KOG2315|consen 270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR 346 (566)
T ss_pred CCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccch
Confidence 689999999999986655 4456789999986 3555555 45667889999999999999985 57999999999
Q ss_pred eEEEEEecccceeeeeceeeEEEecC
Q 006229 630 RKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 630 ~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
+++..+.+.... -|.|+||
T Consensus 347 K~i~~~~a~~tt-------~~eW~Pd 365 (566)
T KOG2315|consen 347 KLIAKFKAANTT-------VFEWSPD 365 (566)
T ss_pred hhccccccCCce-------EEEEcCC
Confidence 999888766543 4778775
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.004 Score=69.99 Aligned_cols=80 Identities=15% Similarity=0.046 Sum_probs=52.6
Q ss_pred eecCCCCCeeEEEEcCCCCEEEEEeC-CC--cEEEEeCCCCeEEEE-ecccCCCEEEEEEcCCCCEEEEEeC-CCc--EE
Q 006229 550 LIPASTSKVESCHFSPDGKLLATGGH-DK--KAVLWCTESFTVKST-LEEHTQWITDVRFSPSLSRLATSSA-DRT--VR 622 (655)
Q Consensus 550 ~l~gH~~~V~sl~fSpdG~lLaSgs~-Dg--tVrIWDl~t~~~l~t-l~gH~~~ItsVafsPdg~~LaSgS~-Dgt--Vr 622 (655)
.+..+...+..++|+|||++|+..+. ++ .|.++|+.+++.... +.++ .....+|+|||++|+..+. ++. |.
T Consensus 300 ~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~--~~~~~~~SpDG~~l~~~~~~~g~~~I~ 377 (448)
T PRK04792 300 RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGE--QNLGGSITPDGRSMIMVNRTNGKFNIA 377 (448)
T ss_pred ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCC--CCcCeeECCCCCEEEEEEecCCceEEE
Confidence 33445555678899999998776553 33 466668877765432 2332 3456799999999877665 443 55
Q ss_pred EEECCCCeE
Q 006229 623 VWDTENVRK 631 (655)
Q Consensus 623 VWDl~tg~~ 631 (655)
++|+.++..
T Consensus 378 ~~dl~~g~~ 386 (448)
T PRK04792 378 RQDLETGAM 386 (448)
T ss_pred EEECCCCCe
Confidence 578877754
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00038 Score=76.35 Aligned_cols=80 Identities=18% Similarity=0.374 Sum_probs=69.9
Q ss_pred eecCCCC--CeeEEEE-cCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 006229 550 LIPASTS--KVESCHF-SPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (655)
Q Consensus 550 ~l~gH~~--~V~sl~f-SpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl 626 (655)
.++||.. .|.++-| -|...++++|+..|.|.|||-.+++.+..++|-...|+||.=+|--..|||++-|.-||||-.
T Consensus 386 vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 386 VYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTP 465 (559)
T ss_pred hhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecC
Confidence 3788864 4777765 457789999999999999999999999999988889999999999999999999999999987
Q ss_pred CCC
Q 006229 627 ENV 629 (655)
Q Consensus 627 ~tg 629 (655)
.+.
T Consensus 466 ~~~ 468 (559)
T KOG1334|consen 466 LTA 468 (559)
T ss_pred Ccc
Confidence 443
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00045 Score=78.86 Aligned_cols=105 Identities=22% Similarity=0.330 Sum_probs=78.0
Q ss_pred CCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEe
Q 006229 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWC 583 (655)
Q Consensus 505 ~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSp-dG~lLaSgs~DgtVrIWD 583 (655)
+-+.+++++.|..|..|+..... + .+-.+..-...-..|+|+- ++..|| .++.+-|+|||
T Consensus 126 ~pdVlatcsvdt~vh~wd~rSp~----~--------------p~ys~~~w~s~asqVkwnyk~p~vla-sshg~~i~vwd 186 (1081)
T KOG0309|consen 126 HPDVLATCSVDTYVHAWDMRSPH----R--------------PFYSTSSWRSAASQVKWNYKDPNVLA-SSHGNDIFVWD 186 (1081)
T ss_pred CCcceeeccccccceeeeccCCC----c--------------ceeeeecccccCceeeecccCcchhh-hccCCceEEEe
Confidence 33678999999999999665541 1 2222222234456789987 555554 46678899999
Q ss_pred CCCC-eEEEEecccCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCC
Q 006229 584 TESF-TVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTEN 628 (655)
Q Consensus 584 l~t~-~~l~tl~gH~~~ItsVafsP-dg~~LaSgS~DgtVrVWDl~t 628 (655)
++.| ..+.++++|...|+.+.|.. ....+.+++.|++|+.||...
T Consensus 187 ~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~k 233 (1081)
T KOG0309|consen 187 LRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSK 233 (1081)
T ss_pred ccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccc
Confidence 9855 67889999999999999975 345789999999999999874
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.013 Score=60.73 Aligned_cols=84 Identities=20% Similarity=0.084 Sum_probs=63.8
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE-----EecccCCCEEEEEEcCCCC--EEEEEeCCCcEEEEEC
Q 006229 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-----TLEEHTQWITDVRFSPSLS--RLATSSADRTVRVWDT 626 (655)
Q Consensus 554 H~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~-----tl~gH~~~ItsVafsPdg~--~LaSgS~DgtVrVWDl 626 (655)
-++.=.|..|+.....+|++..||++.|||++...... +-..|.+.|..+.|++-|. +|+-.-.=+.+.|-|+
T Consensus 202 t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~ 281 (344)
T KOG4532|consen 202 TSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDT 281 (344)
T ss_pred cCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEc
Confidence 34455689999999999999999999999998654322 2235899999999998664 4444445568999999
Q ss_pred CCCeEEEEEec
Q 006229 627 ENVRKLTFICC 637 (655)
Q Consensus 627 ~tg~~v~~l~~ 637 (655)
|+++....+..
T Consensus 282 R~~~~~q~I~i 292 (344)
T KOG4532|consen 282 RNYVNHQVIVI 292 (344)
T ss_pred ccCceeeEEec
Confidence 99876655543
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00075 Score=72.72 Aligned_cols=83 Identities=19% Similarity=0.168 Sum_probs=72.3
Q ss_pred eEEeecCCCCCeeEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCC-EEEEEeCCCcEEEE
Q 006229 547 EFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVW 624 (655)
Q Consensus 547 ~v~~l~gH~~~V~sl~fSpdG~-lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~-~LaSgS~DgtVrVW 624 (655)
....+.+|...|.+++|||..+ +|..++.+.+|+|.|+++..++.++..| ..|++++|+-|.. +|..|-..|.|.||
T Consensus 185 ssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlvy 263 (463)
T KOG1645|consen 185 SSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVY 263 (463)
T ss_pred hhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEE
Confidence 3446678888999999999766 8999999999999999999999999888 8899999998765 57777789999999
Q ss_pred ECCCCe
Q 006229 625 DTENVR 630 (655)
Q Consensus 625 Dl~tg~ 630 (655)
|++..+
T Consensus 264 D~R~~~ 269 (463)
T KOG1645|consen 264 DMRQPE 269 (463)
T ss_pred EccCCC
Confidence 999654
|
|
| >smart00667 LisH Lissencephaly type-1-like homology motif | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00073 Score=47.30 Aligned_cols=31 Identities=29% Similarity=0.476 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHhcCCC
Q 006229 9 DKMLDVYIYDYLLKRKLHASAKAFQTEGKVS 39 (655)
Q Consensus 9 ~~~L~~yIydyl~k~~~~~tA~~f~~e~~~~ 39 (655)
+..|+..|++||.++|+.++|++|.+|.++.
T Consensus 3 ~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 3 RSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 4579999999999999999999999998874
|
Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. |
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.003 Score=66.73 Aligned_cols=77 Identities=18% Similarity=0.312 Sum_probs=61.7
Q ss_pred CCCeeEEEEcCCCCEEEEEeCC--CcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE
Q 006229 555 TSKVESCHFSPDGKLLATGGHD--KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKL 632 (655)
Q Consensus 555 ~~~V~sl~fSpdG~lLaSgs~D--gtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v 632 (655)
.-.|.-++||+|..+++|-... ..+-|||+...+....+. ....|....|+|....|+.+.....+++|......++
T Consensus 318 k~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V 396 (447)
T KOG4497|consen 318 KCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVV 396 (447)
T ss_pred ccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEE
Confidence 3457889999999999986543 578999998876654443 6778999999999999998888888999988765554
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0025 Score=67.20 Aligned_cols=95 Identities=17% Similarity=0.244 Sum_probs=73.0
Q ss_pred CCCeeEEEEcCCCCEEEE-EeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCE-EEEEeCCCcEEEEECCCCeEE
Q 006229 555 TSKVESCHFSPDGKLLAT-GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENVRKL 632 (655)
Q Consensus 555 ~~~V~sl~fSpdG~lLaS-gs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~-LaSgS~DgtVrVWDl~tg~~v 632 (655)
-++|.-+.|..|.-++++ ...|+.|.+|++..-+-...+......+.+++|+|||+. |.+...|-+|.||.+.+.++.
T Consensus 48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~ 127 (447)
T KOG4497|consen 48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY 127 (447)
T ss_pred HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE
Confidence 356888999988775544 567889999999988888888888999999999999965 556778999999999988776
Q ss_pred EEEecccceeeeeceeeEEEecC
Q 006229 633 TFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 633 ~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
..--... .+-.++||||
T Consensus 128 ~~~~pK~------~~kg~~f~~d 144 (447)
T KOG4497|consen 128 LLPHPKT------NVKGYAFHPD 144 (447)
T ss_pred Eeccccc------CceeEEECCC
Confidence 4322221 1235677765
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0017 Score=66.68 Aligned_cols=62 Identities=23% Similarity=0.277 Sum_probs=52.6
Q ss_pred cEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCC
Q 006229 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE 585 (655)
Q Consensus 507 ~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSp-dG~lLaSgs~DgtVrIWDl~ 585 (655)
..+.+|+.|+.|.+|+..... ..+..++.|+.+|.-|.|+| ++..|+++++||.+.-||..
T Consensus 193 ~~v~cgt~dg~~~l~d~rn~~------------------~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 193 HLVCCGTDDGIVGLWDARNVA------------------MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred cEEEEecCCCeEEEEEccccc------------------chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence 668899999999999665441 35567789999999999999 78899999999999999976
Q ss_pred C
Q 006229 586 S 586 (655)
Q Consensus 586 t 586 (655)
+
T Consensus 255 ~ 255 (319)
T KOG4714|consen 255 T 255 (319)
T ss_pred C
Confidence 4
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0016 Score=68.95 Aligned_cols=127 Identities=15% Similarity=0.114 Sum_probs=81.7
Q ss_pred CcccCCCC-cEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCC
Q 006229 499 PNQLTDMD-RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDK 577 (655)
Q Consensus 499 s~~l~~~~-~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~Dg 577 (655)
+..|.++. ..++-.|..|+|++++..... ..+...++++..... .....+..--+.|..|.|+++|+++++-.. -
T Consensus 218 saEFhp~~cn~f~YSSSKGtIrLcDmR~~a-LCd~hsKlfEepedp--~~rsffseiIsSISDvKFs~sGryilsRDy-l 293 (433)
T KOG1354|consen 218 SAEFHPHHCNVFVYSSSKGTIRLCDMRQSA-LCDAHSKLFEEPEDP--SSRSFFSEIISSISDVKFSHSGRYILSRDY-L 293 (433)
T ss_pred hhccCHhHccEEEEecCCCcEEEeechhhh-hhcchhhhhccccCC--cchhhHHHHhhhhhceEEccCCcEEEEecc-c
Confidence 33444443 234555677999999776542 222222333222111 111122233467899999999999998754 7
Q ss_pred cEEEEeC-CCCeEEEEecccC------------CCE---EEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 006229 578 KAVLWCT-ESFTVKSTLEEHT------------QWI---TDVRFSPSLSRLATSSADRTVRVWDTENV 629 (655)
Q Consensus 578 tVrIWDl-~t~~~l~tl~gH~------------~~I---tsVafsPdg~~LaSgS~DgtVrVWDl~tg 629 (655)
+|+|||+ ...+.+.++.-|. +.| .-++|+-++.+++|||....++|+++..|
T Consensus 294 tvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 294 TVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred eeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 8999999 3455666665553 223 45889989999999999999999996644
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.01 Score=73.57 Aligned_cols=74 Identities=8% Similarity=0.045 Sum_probs=60.7
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec-------------ccCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 006229 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-------------EHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (655)
Q Consensus 558 V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~-------------gH~~~ItsVafsPdg~~LaSgS~DgtVrVW 624 (655)
-..|+|+++|.++++-..+++|++||..++....... ++-.....|+++++|+.+++-+.+++|++|
T Consensus 806 P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvi 885 (1057)
T PLN02919 806 PLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYL 885 (1057)
T ss_pred CceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEE
Confidence 3588999999999999999999999998876653321 122357789999999999999999999999
Q ss_pred ECCCCeE
Q 006229 625 DTENVRK 631 (655)
Q Consensus 625 Dl~tg~~ 631 (655)
|+++++.
T Consensus 886 d~~~~~~ 892 (1057)
T PLN02919 886 DLNKGEA 892 (1057)
T ss_pred ECCCCcc
Confidence 9998764
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0011 Score=70.15 Aligned_cols=86 Identities=15% Similarity=0.142 Sum_probs=73.2
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC-----eEEEEecccCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECC
Q 006229 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-----TVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTE 627 (655)
Q Consensus 554 H~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~-----~~l~tl~gH~~~ItsVafsP-dg~~LaSgS~DgtVrVWDl~ 627 (655)
.++.|.++.|...+.++..|+..|.|.+.|++.. .+...+. |...|+|+..-- ++.+|++.+.||+|++||+|
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R 329 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLR 329 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhhhhccccceEeeccCcCceeEeeeh
Confidence 4567999999998999999999999999999864 4554443 999999998765 78899999999999999999
Q ss_pred CCeE---EEEEecccc
Q 006229 628 NVRK---LTFICCYKC 640 (655)
Q Consensus 628 tg~~---v~~l~~~~~ 640 (655)
--+| |..+.+|..
T Consensus 330 ~~K~~~~V~qYeGHvN 345 (425)
T KOG2695|consen 330 ATKCKKSVMQYEGHVN 345 (425)
T ss_pred hhhcccceeeeecccc
Confidence 8777 888888764
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0061 Score=66.90 Aligned_cols=73 Identities=16% Similarity=0.089 Sum_probs=57.3
Q ss_pred CEE-EEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccc
Q 006229 568 KLL-ATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKC 640 (655)
Q Consensus 568 ~lL-aSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~ 640 (655)
+++ ++-..++.|.|.|..+.+.+.++......-..++|+|||+++++++.|+.|.++|+.+++.+.++..+..
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~ 79 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN 79 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC
Confidence 344 4556789999999999999999986555455688999999999999999999999999999988876554
|
... |
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0031 Score=66.17 Aligned_cols=42 Identities=21% Similarity=0.264 Sum_probs=32.6
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CeEEEEEeccc
Q 006229 597 TQWITDVRFSPSLSRLATSSADRTVRVWDTEN-VRKLTFICCYK 639 (655)
Q Consensus 597 ~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~t-g~~v~~l~~~~ 639 (655)
...|.++.|+++|++|++-+.- +|+|||++. ..|+.++..|.
T Consensus 280 vsSISD~kFs~ngryIlsRdyl-tvkiwDvnm~k~pikTi~~h~ 322 (460)
T COG5170 280 VSSISDFKFSDNGRYILSRDYL-TVKIWDVNMAKNPIKTIPMHC 322 (460)
T ss_pred hhhhcceEEcCCCcEEEEeccc-eEEEEecccccCCceeechHH
Confidence 3568899999999999987654 899999984 45677765443
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.007 Score=69.86 Aligned_cols=97 Identities=20% Similarity=0.194 Sum_probs=78.2
Q ss_pred eeeEEeecCCCCCeeEEEEcCC------C------CEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcC---CC
Q 006229 545 FTEFQLIPASTSKVESCHFSPD------G------KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP---SL 609 (655)
Q Consensus 545 ~~~v~~l~gH~~~V~sl~fSpd------G------~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsP---dg 609 (655)
...+..+.-|...|+.|.|.|- + -+||++...|.|-|||...+..+..+..|.+.|-+++|-+ +.
T Consensus 45 ~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~S 124 (1062)
T KOG1912|consen 45 LQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDS 124 (1062)
T ss_pred hhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcc
Confidence 3567778889999999999862 1 2678888889999999999999999999999999999976 34
Q ss_pred -CEEEEEeCCCcEEEEECCCCeEEEEEecccce
Q 006229 610 -SRLATSSADRTVRVWDTENVRKLTFICCYKCI 641 (655)
Q Consensus 610 -~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~ 641 (655)
.+|+.-..-.+|-+|+..+|+.+-........
T Consensus 125 rd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~i 157 (1062)
T KOG1912|consen 125 RDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEI 157 (1062)
T ss_pred hheeEEecCCcEEEEEEccCCceeeccccCCcc
Confidence 45666666779999999999988666555443
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0035 Score=73.41 Aligned_cols=76 Identities=25% Similarity=0.296 Sum_probs=62.9
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeC---------CCcEEEEE
Q 006229 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---------DRTVRVWD 625 (655)
Q Consensus 555 ~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~---------DgtVrVWD 625 (655)
.++|.-++. ++++|.+|...|+|.+-|.++.+.++++..|++.|.++.. .|+.|+|||. |..|+|||
T Consensus 177 a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYD 252 (1118)
T KOG1275|consen 177 ASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYD 252 (1118)
T ss_pred CCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhh
Confidence 334554544 5899999999999999999999999999999999987765 4899999986 66799999
Q ss_pred CCCCeEEEE
Q 006229 626 TENVRKLTF 634 (655)
Q Consensus 626 l~tg~~v~~ 634 (655)
+|..+.+.-
T Consensus 253 LRmmral~P 261 (1118)
T KOG1275|consen 253 LRMMRALSP 261 (1118)
T ss_pred hhhhhccCC
Confidence 997655443
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.056 Score=58.96 Aligned_cols=77 Identities=13% Similarity=0.097 Sum_probs=62.6
Q ss_pred EcCCCCEEEEEeC----------CCcEEEEeCCCCeEEEEeccc-------CCCEEEEEEcCCCCEEEEEe-C-CCcEEE
Q 006229 563 FSPDGKLLATGGH----------DKKAVLWCTESFTVKSTLEEH-------TQWITDVRFSPSLSRLATSS-A-DRTVRV 623 (655)
Q Consensus 563 fSpdG~lLaSgs~----------DgtVrIWDl~t~~~l~tl~gH-------~~~ItsVafsPdg~~LaSgS-~-DgtVrV 623 (655)
+||||+.|+.+.. +..|.|||+.+++.+..+.-- ...-..++++|||++|+..- . |..|-|
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 8999998877766 789999999999999888631 22344788999999999776 3 788999
Q ss_pred EECCCCeEEEEEeccc
Q 006229 624 WDTENVRKLTFICCYK 639 (655)
Q Consensus 624 WDl~tg~~v~~l~~~~ 639 (655)
.|+.+++.+..+....
T Consensus 133 vD~~~~kvv~ei~vp~ 148 (352)
T TIGR02658 133 VDLEGKAFVRMMDVPD 148 (352)
T ss_pred EECCCCcEEEEEeCCC
Confidence 9999999888776544
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.022 Score=66.33 Aligned_cols=139 Identities=20% Similarity=0.153 Sum_probs=88.3
Q ss_pred ccCCCCceEEEEecCCCCcccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCC
Q 006229 476 HNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST 555 (655)
Q Consensus 476 ~s~S~d~s~l~ws~dg~~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~ 555 (655)
.-+...+.+.++...+...........+..+.++++||.||+|.+.-.-++ ++...+ ...
T Consensus 53 ~~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~-------------------~~~~~~-df~ 112 (846)
T KOG2066|consen 53 ALGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTD-------------------DEITQY-DFK 112 (846)
T ss_pred eeccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCC-------------------ccceeE-ecC
Confidence 334445555555555431111111111445689999999999988733222 111111 224
Q ss_pred CCeeEEEEcCC-----CCEEEEEeCCCcEEEEeCCCC--eEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 006229 556 SKVESCHFSPD-----GKLLATGGHDKKAVLWCTESF--TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (655)
Q Consensus 556 ~~V~sl~fSpd-----G~lLaSgs~DgtVrIWDl~t~--~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~t 628 (655)
.++.+|+++|| .+.+++||.-| +.++.-.-. +.-..+..-.+.|.+|+|. |.+||=++.+| |+|||+.+
T Consensus 113 rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~ 188 (846)
T KOG2066|consen 113 RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPT 188 (846)
T ss_pred CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccc
Confidence 57889999997 66899999888 777654321 1111455677899999997 88999988775 69999998
Q ss_pred CeEEEEEecc
Q 006229 629 VRKLTFICCY 638 (655)
Q Consensus 629 g~~v~~l~~~ 638 (655)
+..+..+...
T Consensus 189 ~~~l~~i~~p 198 (846)
T KOG2066|consen 189 RQRLTNIPPP 198 (846)
T ss_pred cceeeccCCC
Confidence 8777665543
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.082 Score=57.24 Aligned_cols=76 Identities=20% Similarity=0.269 Sum_probs=54.0
Q ss_pred CeeEEEEcCCCCEEEEEe-CCCcEEEEeCC--CC--eEEEEecccCCCEEEEEEcCCCCEEEEEe-CCCcEEEEEC--CC
Q 006229 557 KVESCHFSPDGKLLATGG-HDKKAVLWCTE--SF--TVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDT--EN 628 (655)
Q Consensus 557 ~V~sl~fSpdG~lLaSgs-~DgtVrIWDl~--t~--~~l~tl~gH~~~ItsVafsPdg~~LaSgS-~DgtVrVWDl--~t 628 (655)
....|+++|||++|+++. .+.+|.+|+++ ++ +.+..+......-+.+.|+|+|++|+.+. .++.|.+|++ ++
T Consensus 246 ~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~t 325 (345)
T PF10282_consen 246 APAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDT 325 (345)
T ss_dssp SEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT
T ss_pred CceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCC
Confidence 577899999999877765 46789999983 33 33334433344578999999999999887 4668999976 46
Q ss_pred CeEE
Q 006229 629 VRKL 632 (655)
Q Consensus 629 g~~v 632 (655)
|...
T Consensus 326 G~l~ 329 (345)
T PF10282_consen 326 GKLT 329 (345)
T ss_dssp TEEE
T ss_pred CcEE
Confidence 6543
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.053 Score=67.29 Aligned_cols=78 Identities=15% Similarity=0.076 Sum_probs=57.1
Q ss_pred CeeEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeEEEEecc-------------c--------CCCEEEEEEcCCCCEEEE
Q 006229 557 KVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEE-------------H--------TQWITDVRFSPSLSRLAT 614 (655)
Q Consensus 557 ~V~sl~fSpdG~-lLaSgs~DgtVrIWDl~t~~~l~tl~g-------------H--------~~~ItsVafsPdg~~LaS 614 (655)
....|+|+|+|. ++++-+.++.|++||+.++.......+ + -..-..|+|+++|..+++
T Consensus 741 ~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVA 820 (1057)
T PLN02919 741 QPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVA 820 (1057)
T ss_pred CccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEE
Confidence 356799999998 555666779999999987653211100 0 112358899999999999
Q ss_pred EeCCCcEEEEECCCCeEEEE
Q 006229 615 SSADRTVRVWDTENVRKLTF 634 (655)
Q Consensus 615 gS~DgtVrVWDl~tg~~v~~ 634 (655)
-+.+++|++||..++.....
T Consensus 821 Ds~N~rIrviD~~tg~v~ti 840 (1057)
T PLN02919 821 DSYNHKIKKLDPATKRVTTL 840 (1057)
T ss_pred ECCCCEEEEEECCCCeEEEE
Confidence 99999999999988766543
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.06 Score=56.21 Aligned_cols=84 Identities=19% Similarity=0.271 Sum_probs=60.1
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCC-----------cEEEEeCCCCeE---------------------EE--E---e---
Q 006229 554 STSKVESCHFSPDGKLLATGGHDK-----------KAVLWCTESFTV---------------------KS--T---L--- 593 (655)
Q Consensus 554 H~~~V~sl~fSpdG~lLaSgs~Dg-----------tVrIWDl~t~~~---------------------l~--t---l--- 593 (655)
+...|.++.|+|..++|+.||... -+..|.+-++.+ .+ . +
T Consensus 146 yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~ 225 (282)
T PF15492_consen 146 YPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQ 225 (282)
T ss_pred CCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeecc
Confidence 466899999999989888876521 255664422110 00 1 0
Q ss_pred cccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEec
Q 006229 594 EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICC 637 (655)
Q Consensus 594 ~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~ 637 (655)
..-.+.|..+.++|||..||+...+|.|.||++-+.+....+.-
T Consensus 226 ~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 226 GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence 11356799999999999999999999999999988777665543
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.054 Score=61.41 Aligned_cols=91 Identities=14% Similarity=0.053 Sum_probs=59.8
Q ss_pred eeEEEEcC-CCCEEEEE----eCCCcE----EEEeCCCCeE--EEE-ecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 006229 558 VESCHFSP-DGKLLATG----GHDKKA----VLWCTESFTV--KST-LEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (655)
Q Consensus 558 V~sl~fSp-dG~lLaSg----s~DgtV----rIWDl~t~~~--l~t-l~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWD 625 (655)
..++.||- +...+.|. +.++.+ ++|++...+. +.. --.+...|.|++++|+.+.|+.|+.||+|++||
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD 287 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYD 287 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEE
Confidence 46788887 45555553 334432 3555543322 211 125788999999999999999999999999999
Q ss_pred CCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 626 TENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 626 l~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
...+....+ . .......++|||+
T Consensus 288 ~~~~~t~~~-k------a~~~P~~iaWHp~ 310 (545)
T PF11768_consen 288 TTRGVTLLA-K------AEFIPTLIAWHPD 310 (545)
T ss_pred cCCCeeeee-e------ecccceEEEEcCC
Confidence 987633321 1 1233567888885
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.01 Score=66.46 Aligned_cols=74 Identities=18% Similarity=0.277 Sum_probs=57.8
Q ss_pred CCCCeeEEEEcCCCCEEEEEeC-----------CCcEEEEeCCCCeEEEEeccc--CCCE-EEEEEcCCCCEEEEEeCCC
Q 006229 554 STSKVESCHFSPDGKLLATGGH-----------DKKAVLWCTESFTVKSTLEEH--TQWI-TDVRFSPSLSRLATSSADR 619 (655)
Q Consensus 554 H~~~V~sl~fSpdG~lLaSgs~-----------DgtVrIWDl~t~~~l~tl~gH--~~~I-tsVafsPdg~~LaSgS~Dg 619 (655)
|. .|.-++|||..+||+|-+. ...|+|||+.+|...++|..- ...+ .-++||.|++++|-...|
T Consensus 249 Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~- 326 (698)
T KOG2314|consen 249 HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN- 326 (698)
T ss_pred CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-
Confidence 54 4889999999999999653 257899999999998888642 2222 246899999999988876
Q ss_pred cEEEEECCCC
Q 006229 620 TVRVWDTENV 629 (655)
Q Consensus 620 tVrVWDl~tg 629 (655)
+|.|++..+.
T Consensus 327 sisIyEtpsf 336 (698)
T KOG2314|consen 327 SISIYETPSF 336 (698)
T ss_pred eEEEEecCce
Confidence 7889987753
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.014 Score=66.92 Aligned_cols=118 Identities=10% Similarity=0.151 Sum_probs=85.8
Q ss_pred cEEEeccCCCcEEEEecCCCC-CCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 006229 507 RFVDDGSLDDNVESFLSPDDA-DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (655)
Q Consensus 507 ~~LasGS~D~tV~vW~s~d~~-d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~ 585 (655)
.|+++|+.||-+++.-..... +.... .+....+...-.++.||++.|.-+.|+.....|.|...+|.|.||-+-
T Consensus 27 gyIAcgG~dGlLKVlKl~t~t~d~~~~-----glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmly 101 (1189)
T KOG2041|consen 27 GYIACGGADGLLKVLKLGTDTTDLNKS-----GLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLY 101 (1189)
T ss_pred CeEEeccccceeEEEEccccCCccccc-----ccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeee
Confidence 599999999999998433221 11111 011222334456788999999999999888899999999999999876
Q ss_pred CCeEEEEe--cccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 006229 586 SFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENV 629 (655)
Q Consensus 586 t~~~l~tl--~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg 629 (655)
.+.-...+ ....+.|.+++|..||..|...-.||.|.|=.++..
T Consensus 102 kgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGN 147 (1189)
T KOG2041|consen 102 KGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGN 147 (1189)
T ss_pred cccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccc
Confidence 55322111 235678999999999999999999999877766643
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.013 Score=63.27 Aligned_cols=128 Identities=14% Similarity=0.150 Sum_probs=79.3
Q ss_pred CCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 006229 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (655)
Q Consensus 503 ~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIW 582 (655)
.+..++|+.+-.++...+++...... ..+++ .+..+......|+.+..+........++.+..+.+|
T Consensus 71 s~~~~llAv~~~~K~~~~f~~~~~~~----~~kl~---------~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~ 137 (390)
T KOG3914|consen 71 SDSGRLVAVATSSKQRAVFDYRENPK----GAKLL---------DVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDIL 137 (390)
T ss_pred CCCceEEEEEeCCCceEEEEEecCCC----cceee---------eEeecccCcceeeeeeccceEEEEeecCCceeeeee
Confidence 34446777776666655554333211 11111 122222223344445544444444445666778888
Q ss_pred eCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEec-ccceeee
Q 006229 583 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICC-YKCIFVS 644 (655)
Q Consensus 583 Dl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~-~~~~v~s 644 (655)
....+++. .+-||-..+++|+|+||+++|+|+..|..|||=.......+..|.- |...|..
T Consensus 138 s~~~~~~~-~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~ 199 (390)
T KOG3914|consen 138 SADSGRCE-PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVST 199 (390)
T ss_pred cccccCcc-hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheee
Confidence 87775555 4568999999999999999999999999999987776555555543 5554443
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.094 Score=58.62 Aligned_cols=78 Identities=14% Similarity=0.034 Sum_probs=52.5
Q ss_pred CCCCeeEEEEcCCCCEEEE-EeCC--CcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeC-CC--cEEEEECC
Q 006229 554 STSKVESCHFSPDGKLLAT-GGHD--KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DR--TVRVWDTE 627 (655)
Q Consensus 554 H~~~V~sl~fSpdG~lLaS-gs~D--gtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~-Dg--tVrVWDl~ 627 (655)
..+.+.+..|+|||+.|+. .+.+ ..|.++|+.++... .+..+........|+|||+.|+-.+. .+ .|.++|+.
T Consensus 231 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~ 309 (419)
T PRK04043 231 SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLN 309 (419)
T ss_pred CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECC
Confidence 3455667889999986554 4334 45777788877644 45444444456789999987776663 33 48888888
Q ss_pred CCeEE
Q 006229 628 NVRKL 632 (655)
Q Consensus 628 tg~~v 632 (655)
+++..
T Consensus 310 ~g~~~ 314 (419)
T PRK04043 310 SGSVE 314 (419)
T ss_pred CCCeE
Confidence 77653
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.017 Score=68.00 Aligned_cols=106 Identities=19% Similarity=0.182 Sum_probs=78.2
Q ss_pred ccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeC-----
Q 006229 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH----- 575 (655)
Q Consensus 501 ~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~----- 575 (655)
.+.-.++++.+|...|+|.+-+. .+++.+.++.+|++.|.+++.. |++|+++|.
T Consensus 182 imR~Nnr~lf~G~t~G~V~LrD~-------------------~s~~~iht~~aHs~siSDfDv~--GNlLitCG~S~R~~ 240 (1118)
T KOG1275|consen 182 IMRYNNRNLFCGDTRGTVFLRDP-------------------NSFETIHTFDAHSGSISDFDVQ--GNLLITCGYSMRRY 240 (1118)
T ss_pred EEEecCcEEEeecccceEEeecC-------------------CcCceeeeeeccccceeeeecc--CCeEEEeecccccc
Confidence 34555678888888777766532 3457889999999999887764 999999886
Q ss_pred ----CCcEEEEeCCCCeEEE------------------------------------Eeccc----------CCCEEEEEE
Q 006229 576 ----DKKAVLWCTESFTVKS------------------------------------TLEEH----------TQWITDVRF 605 (655)
Q Consensus 576 ----DgtVrIWDl~t~~~l~------------------------------------tl~gH----------~~~ItsVaf 605 (655)
|..|+|||++..+.+. ++..| ...|..+++
T Consensus 241 ~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDi 320 (1118)
T KOG1275|consen 241 NLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDI 320 (1118)
T ss_pred cccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEe
Confidence 6678999987542210 01111 234888999
Q ss_pred cCCCCEEEEEeCCCcEEEEECC
Q 006229 606 SPSLSRLATSSADRTVRVWDTE 627 (655)
Q Consensus 606 sPdg~~LaSgS~DgtVrVWDl~ 627 (655)
++++..++.|-.+|.|.+|--+
T Consensus 321 Ssn~~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 321 SSNGDALAFGDHEGHVNLWADR 342 (1118)
T ss_pred cCCCceEEEecccCcEeeecCC
Confidence 9999999999999999999743
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.0036 Score=72.96 Aligned_cols=93 Identities=20% Similarity=0.186 Sum_probs=78.6
Q ss_pred eeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCC--cEE
Q 006229 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR--TVR 622 (655)
Q Consensus 545 ~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~Dg--tVr 622 (655)
|+..+.++.|+...+||+|+-+.+.|+.|+..|.|+++++.+|........|...|+.|.=+-+|..++|.+.-. ..-
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHH
Confidence 456778888999999999999999999999999999999999999999999999999999888998877666533 478
Q ss_pred EEECC-CCeEEEEEec
Q 006229 623 VWDTE-NVRKLTFICC 637 (655)
Q Consensus 623 VWDl~-tg~~v~~l~~ 637 (655)
+|++. ++...++|..
T Consensus 1171 LW~~~s~~~~~Hsf~e 1186 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFDE 1186 (1516)
T ss_pred HhccccccCccccccc
Confidence 99986 3455555543
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.0071 Score=69.46 Aligned_cols=101 Identities=16% Similarity=0.139 Sum_probs=75.0
Q ss_pred eeEEeecCCCCCeeEEEEcCCC-CEEEEEeCCCcEEEEeCCCC-eEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 006229 546 TEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623 (655)
Q Consensus 546 ~~v~~l~gH~~~V~sl~fSpdG-~lLaSgs~DgtVrIWDl~t~-~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrV 623 (655)
.....+.+|+.+|+.+-|++.. ..|++++.|..|..||+++- ..+..+..-...-+-|+|+.-...+...+....|+|
T Consensus 105 aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~v 184 (1081)
T KOG0309|consen 105 AIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFV 184 (1081)
T ss_pred ceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEE
Confidence 3445678999999999999954 49999999999999999875 345555544556678999986555666667778999
Q ss_pred EECCCCe-EEEEEecccceeeeec
Q 006229 624 WDTENVR-KLTFICCYKCIFVSTA 646 (655)
Q Consensus 624 WDl~tg~-~v~~l~~~~~~v~s~~ 646 (655)
||++.|. .+.++.+|...+....
T Consensus 185 wd~r~gs~pl~s~K~~vs~vn~~~ 208 (1081)
T KOG0309|consen 185 WDLRKGSTPLCSLKGHVSSVNSID 208 (1081)
T ss_pred EeccCCCcceEEecccceeeehHH
Confidence 9998664 4566766555444443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.0075 Score=70.11 Aligned_cols=70 Identities=20% Similarity=0.239 Sum_probs=64.1
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 006229 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (655)
Q Consensus 558 V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~ 627 (655)
++++||+|..-.|++|=.-|.+.||...+.+.......|+..|.-|.||++|..|+|+..-|.|.+|...
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 5679999999899999888999999998877777777899999999999999999999999999999776
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.015 Score=66.05 Aligned_cols=92 Identities=17% Similarity=0.128 Sum_probs=64.6
Q ss_pred CceEEEEecCCCCcccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCee-
Q 006229 481 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE- 559 (655)
Q Consensus 481 d~s~l~ws~dg~~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~- 559 (655)
....+.|+|... ++|.+..++.|-+.... +..+-++.-|...|+
T Consensus 22 ~i~~~ewnP~~d---------------LiA~~t~~gelli~R~n--------------------~qRlwtip~p~~~v~~ 66 (665)
T KOG4640|consen 22 NIKRIEWNPKMD---------------LIATRTEKGELLIHRLN--------------------WQRLWTIPIPGENVTA 66 (665)
T ss_pred ceEEEEEcCccc---------------hhheeccCCcEEEEEec--------------------cceeEeccCCCCccce
Confidence 446677887543 56777677766665222 123334444555566
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe-cccCCCEEEEEEcC
Q 006229 560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSP 607 (655)
Q Consensus 560 sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl-~gH~~~ItsVafsP 607 (655)
+++|.|||++||.|-.||+|+|.|++++..+..+ ..-...|+++-|++
T Consensus 67 sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 67 SLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred eeeecCCCCEEEEEecCCeEEEEEccCCCceeccccccccchheeeccc
Confidence 9999999999999999999999999998877663 23556788888863
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.12 Score=57.68 Aligned_cols=87 Identities=11% Similarity=-0.031 Sum_probs=55.2
Q ss_pred eeEEEEcCCCCEEEEEeC-CC--cEEEEeCCCCeEEEEec-ccCCCEEEEEEcCCCCEEEEEeCC---------CcEEEE
Q 006229 558 VESCHFSPDGKLLATGGH-DK--KAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSAD---------RTVRVW 624 (655)
Q Consensus 558 V~sl~fSpdG~lLaSgs~-Dg--tVrIWDl~t~~~l~tl~-gH~~~ItsVafsPdg~~LaSgS~D---------gtVrVW 624 (655)
.....|+|||+.|+-.+. .+ .|.++|+.+++...... +. ....|+|||++|+-.+.. ..|.+.
T Consensus 279 d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~ 354 (419)
T PRK04043 279 DVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLI 354 (419)
T ss_pred cCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEE
Confidence 345689999996666553 33 57788888887644332 22 124899999988777653 257788
Q ss_pred ECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 625 DTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 625 Dl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
|+.++.. ..+.... ......|+||
T Consensus 355 d~~~g~~-~~LT~~~------~~~~p~~SPD 378 (419)
T PRK04043 355 STNSDYI-RRLTANG------VNQFPRFSSD 378 (419)
T ss_pred ECCCCCe-EECCCCC------CcCCeEECCC
Confidence 8887753 3444321 1224667775
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.013 Score=61.57 Aligned_cols=139 Identities=17% Similarity=0.254 Sum_probs=85.1
Q ss_pred ccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCC------------CCCeeEEEEcCCCC
Q 006229 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS------------TSKVESCHFSPDGK 568 (655)
Q Consensus 501 ~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH------------~~~V~sl~fSpdG~ 568 (655)
.++..+.+|++|-..|.|.+|.-.... +...+.+..+.+| ..+|..|.|..++.
T Consensus 33 efd~tg~YlatGDkgGRVvlfer~~s~--------------~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~ 98 (460)
T COG5170 33 EFDETGLYLATGDKGGRVVLFEREKSY--------------GCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTG 98 (460)
T ss_pred EeccccceEeecCCCceEEEeeccccc--------------ccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCC
Confidence 344455689999878899888332221 1111222233333 24688888877443
Q ss_pred --EEEEEeCCCcEEEEeCCCC-------------------------------------e-----EEEEe-cccCCCEEEE
Q 006229 569 --LLATGGHDKKAVLWCTESF-------------------------------------T-----VKSTL-EEHTQWITDV 603 (655)
Q Consensus 569 --lLaSgs~DgtVrIWDl~t~-------------------------------------~-----~l~tl-~gH~~~ItsV 603 (655)
.++..+.|++|++|-+... + +.+.. ..|..-|+++
T Consensus 99 r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSi 178 (460)
T COG5170 99 RNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSI 178 (460)
T ss_pred cceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeee
Confidence 5666778999999965311 0 01112 4588889999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCe-E--EEEEecccceeeeeceeeEEEec
Q 006229 604 RFSPSLSRLATSSADRTVRVWDTENVR-K--LTFICCYKCIFVSTAIGSCFFAP 654 (655)
Q Consensus 604 afsPdg~~LaSgS~DgtVrVWDl~tg~-~--v~~l~~~~~~v~s~~Vss~~F~P 654 (655)
.|..|-..++|+ .|-+|.+|++.-.. + +..+..|.-.-....|.+..|||
T Consensus 179 S~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp 231 (460)
T COG5170 179 SFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHP 231 (460)
T ss_pred eecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCH
Confidence 999988888775 67899999987432 2 22334443333334466777777
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.19 Score=54.95 Aligned_cols=78 Identities=13% Similarity=0.113 Sum_probs=64.5
Q ss_pred CeeEEEEcCCCCEEEEEeC----------CCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCC-EEEEEe-CCCcEEEE
Q 006229 557 KVESCHFSPDGKLLATGGH----------DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSS-ADRTVRVW 624 (655)
Q Consensus 557 ~V~sl~fSpdG~lLaSgs~----------DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~-~LaSgS-~DgtVrVW 624 (655)
.+.-++++++++.|+...+ .+.|.++|+.+++.+..+. -...+..|+|+||++ +|++.. .++.|.|.
T Consensus 249 g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~-vG~~~~~iavS~Dgkp~lyvtn~~s~~VsVi 327 (352)
T TIGR02658 249 GWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE-LGHEIDSINVSQDAKPLLYALSTGDKTLYIF 327 (352)
T ss_pred cceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEe-CCCceeeEEECCCCCeEEEEeCCCCCcEEEE
Confidence 3445999999998887432 2579999999999998886 244899999999999 888666 68899999
Q ss_pred ECCCCeEEEEE
Q 006229 625 DTENVRKLTFI 635 (655)
Q Consensus 625 Dl~tg~~v~~l 635 (655)
|+.+++.+..+
T Consensus 328 D~~t~k~i~~i 338 (352)
T TIGR02658 328 DAETGKELSSV 338 (352)
T ss_pred ECcCCeEEeee
Confidence 99999999888
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.28 Score=53.07 Aligned_cols=86 Identities=16% Similarity=0.216 Sum_probs=58.8
Q ss_pred eeeEEeecCCCCCeeEEEEcCCCCEEEEEeC-CCcEEEEeCCC-CeEEEE---ec--c--------cCCCEEEEEEcCCC
Q 006229 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLWCTES-FTVKST---LE--E--------HTQWITDVRFSPSL 609 (655)
Q Consensus 545 ~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~-DgtVrIWDl~t-~~~l~t---l~--g--------H~~~ItsVafsPdg 609 (655)
+..+.........-..|+++|++++|+++.. +++|.++++.. ++.... +. + -.....++.|+|++
T Consensus 76 L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg 155 (345)
T PF10282_consen 76 LTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDG 155 (345)
T ss_dssp EEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTS
T ss_pred eEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCC
Confidence 3445444433445568999999999999875 89999999976 443332 21 1 12457899999999
Q ss_pred CEEEEEeC-CCcEEEEECCCCe
Q 006229 610 SRLATSSA-DRTVRVWDTENVR 630 (655)
Q Consensus 610 ~~LaSgS~-DgtVrVWDl~tg~ 630 (655)
++|+.+.. ...|++|++....
T Consensus 156 ~~v~v~dlG~D~v~~~~~~~~~ 177 (345)
T PF10282_consen 156 RFVYVPDLGADRVYVYDIDDDT 177 (345)
T ss_dssp SEEEEEETTTTEEEEEEE-TTS
T ss_pred CEEEEEecCCCEEEEEEEeCCC
Confidence 99888754 3379999997654
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.0057 Score=66.88 Aligned_cols=108 Identities=17% Similarity=0.181 Sum_probs=81.9
Q ss_pred CCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeC-CCcEEEE
Q 006229 504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLW 582 (655)
Q Consensus 504 ~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~-DgtVrIW 582 (655)
....++.++|.|+.++.|-... .....-+..++.|.+.|.+++.+-||.+++|.+. |+.+|++
T Consensus 18 tka~fiiqASlDGh~KFWkKs~----------------isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~Kvf 81 (558)
T KOG0882|consen 18 TKAKFIIQASLDGHKKFWKKSR----------------ISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVF 81 (558)
T ss_pred ehhheEEeeecchhhhhcCCCC----------------ccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEE
Confidence 3457999999999999992111 1123455677788899999999999999999888 9999998
Q ss_pred eCCCCeEE------------------------------------------------EEecccCCCEEEEEEcCCCCEEEE
Q 006229 583 CTESFTVK------------------------------------------------STLEEHTQWITDVRFSPSLSRLAT 614 (655)
Q Consensus 583 Dl~t~~~l------------------------------------------------~tl~gH~~~ItsVafsPdg~~LaS 614 (655)
|+++...+ ..-.-|..+|.++.+.+.+..++|
T Consensus 82 DvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vS 161 (558)
T KOG0882|consen 82 DVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVS 161 (558)
T ss_pred EeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceee
Confidence 86532110 000127888999999999999999
Q ss_pred EeCCCcEEEEECC
Q 006229 615 SSADRTVRVWDTE 627 (655)
Q Consensus 615 gS~DgtVrVWDl~ 627 (655)
....|.|.-|...
T Consensus 162 iD~~gmVEyWs~e 174 (558)
T KOG0882|consen 162 IDISGMVEYWSAE 174 (558)
T ss_pred ccccceeEeecCC
Confidence 9888999999887
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.097 Score=57.92 Aligned_cols=97 Identities=18% Similarity=0.117 Sum_probs=78.0
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCCC-cEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE
Q 006229 553 ASTSKVESCHFSPDGKLLATGGHDK-KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRK 631 (655)
Q Consensus 553 gH~~~V~sl~fSpdG~lLaSgs~Dg-tVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~ 631 (655)
+|...|.-..+..+++-++.|..|+ .|-|+|.++++.. .+.+.-+.|.+|..+++|++++.+-....|-+.|++++..
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-r~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv 435 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-RIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV 435 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-EeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe
Confidence 5777899999999999999999999 8999999988765 5566788999999999999999998888899999998864
Q ss_pred EEEEecccceeeeeceeeEEEecC
Q 006229 632 LTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 632 v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
-..=... -..|...+|||+
T Consensus 436 ~~idkS~-----~~lItdf~~~~n 454 (668)
T COG4946 436 RLIDKSE-----YGLITDFDWHPN 454 (668)
T ss_pred eEecccc-----cceeEEEEEcCC
Confidence 4322221 233567888875
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.012 Score=68.08 Aligned_cols=83 Identities=19% Similarity=0.303 Sum_probs=69.1
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCC------------CCEEEEEeCCCcEEEEE
Q 006229 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS------------LSRLATSSADRTVRVWD 625 (655)
Q Consensus 558 V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPd------------g~~LaSgS~DgtVrVWD 625 (655)
-.+++|+|.| +||-|++ ..|.|-|..+.+.+.+++-|...|+.|+|.|. .-+||++...|.|.|||
T Consensus 18 ~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d 95 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVD 95 (1062)
T ss_pred ccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEE
Confidence 5689999877 7788776 56788899999999999999999999999872 12577777889999999
Q ss_pred CCCCeEEEEEeccccee
Q 006229 626 TENVRKLTFICCYKCIF 642 (655)
Q Consensus 626 l~tg~~v~~l~~~~~~v 642 (655)
...+..+..+..+...+
T Consensus 96 ~~~~s~~~~l~~~~~~~ 112 (1062)
T KOG1912|consen 96 FVLASVINWLSHSNDSV 112 (1062)
T ss_pred ehhhhhhhhhcCCCcch
Confidence 99988888887776544
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.019 Score=62.90 Aligned_cols=87 Identities=17% Similarity=0.174 Sum_probs=70.5
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC------CeEE---------EEecccCCCEEEEEEcCCCCEEEEEe
Q 006229 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES------FTVK---------STLEEHTQWITDVRFSPSLSRLATSS 616 (655)
Q Consensus 552 ~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t------~~~l---------~tl~gH~~~ItsVafsPdg~~LaSgS 616 (655)
.-|..+|.++.+++-+..+++....|.|..|..+. .+.. ..+.-.....+++.|+|++..+.+-+
T Consensus 141 klH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~ 220 (558)
T KOG0882|consen 141 KLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLN 220 (558)
T ss_pred ccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccC
Confidence 35889999999999999999999999999998762 1111 11222456788999999999999999
Q ss_pred CCCcEEEEECCCCeEEEEEecc
Q 006229 617 ADRTVRVWDTENVRKLTFICCY 638 (655)
Q Consensus 617 ~DgtVrVWDl~tg~~v~~l~~~ 638 (655)
.|.+||++++++|+.+..+...
T Consensus 221 ~DrkVR~F~~KtGklvqeiDE~ 242 (558)
T KOG0882|consen 221 PDRKVRGFVFKTGKLVQEIDEV 242 (558)
T ss_pred cccEEEEEEeccchhhhhhhcc
Confidence 9999999999999988776543
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.026 Score=64.83 Aligned_cols=110 Identities=12% Similarity=0.091 Sum_probs=79.3
Q ss_pred ccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEE
Q 006229 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV 580 (655)
Q Consensus 501 ~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVr 580 (655)
.++..+++++.|+.-|.|.+|....+. . ......+-.+.+..+..|++..++|.|+..+.|.
T Consensus 40 c~dst~~~l~~GsS~G~lyl~~R~~~~---------~---------~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~ 101 (726)
T KOG3621|consen 40 CVDATEEYLAMGSSAGSVYLYNRHTGE---------M---------RKLKNEGATGITCVRSVSSVEYLVAAGTASGRVS 101 (726)
T ss_pred EeecCCceEEEecccceEEEEecCchh---------h---------hcccccCccceEEEEEecchhHhhhhhcCCceEE
Confidence 345556899999999999888554441 0 0011111334566777888888999999999999
Q ss_pred EEeCCCC-----eEEEEe-cccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 006229 581 LWCTESF-----TVKSTL-EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (655)
Q Consensus 581 IWDl~t~-----~~l~tl-~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~t 628 (655)
|+-+... ..+..+ ..|...|+|++|++++..|++|..-|+|.+-.+.+
T Consensus 102 v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 102 VFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred eehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 9876542 122222 24889999999999999999999999998888776
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.11 Score=57.84 Aligned_cols=85 Identities=11% Similarity=0.053 Sum_probs=63.3
Q ss_pred CCCCCeeEEEEcCCCCEEEEE--eCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCC---cEEEEECC
Q 006229 553 ASTSKVESCHFSPDGKLLATG--GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR---TVRVWDTE 627 (655)
Q Consensus 553 gH~~~V~sl~fSpdG~lLaSg--s~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~Dg---tVrVWDl~ 627 (655)
+-.++|..++|.|+++.+++. -++-++.++|++.. ....+ -...=+.+.|+|.+++++.++.|. .|-+||..
T Consensus 272 ~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~ 348 (561)
T COG5354 272 DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPA 348 (561)
T ss_pred cccccceeeeecccCCceeEEecccccceeecccccc-eEEec--CCcccccccccCcccEEEEecCCccccceEEeccC
Confidence 557889999999988866654 47899999999875 44333 344456678999999999999875 59999987
Q ss_pred CCe-EEEEEecccc
Q 006229 628 NVR-KLTFICCYKC 640 (655)
Q Consensus 628 tg~-~v~~l~~~~~ 640 (655)
+.. |+..+.+...
T Consensus 349 ~rf~~~~~~~~~n~ 362 (561)
T COG5354 349 GRFKVAGAFNGLNT 362 (561)
T ss_pred CceEEEEEeecCCc
Confidence 654 4446655443
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.046 Score=63.70 Aligned_cols=92 Identities=13% Similarity=0.135 Sum_probs=69.4
Q ss_pred CCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 006229 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (655)
Q Consensus 505 ~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl 584 (655)
++++++-|..+|.|+++..... . .+...|+.. .-+|.+++||+.||+|.|--+
T Consensus 48 ~~~~~~~GtH~g~v~~~~~~~~--------------------~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl 100 (846)
T KOG2066|consen 48 HDKFFALGTHRGAVYLTTCQGN--------------------P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSL 100 (846)
T ss_pred hcceeeeccccceEEEEecCCc--------------------c-ccccccccc------ccCCceEEEecCCCcEEEeec
Confidence 4478999999999998843221 1 122233332 558999999999999999998
Q ss_pred CCCeEEEEecccCCCEEEEEEcCC-----CCEEEEEeCCCcEEEEE
Q 006229 585 ESFTVKSTLEEHTQWITDVRFSPS-----LSRLATSSADRTVRVWD 625 (655)
Q Consensus 585 ~t~~~l~tl~gH~~~ItsVafsPd-----g~~LaSgS~DgtVrVWD 625 (655)
.+.+..+++. -...|.+|+++|+ .+.+++|+.-| +.++.
T Consensus 101 ~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~e 144 (846)
T KOG2066|consen 101 FTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSE 144 (846)
T ss_pred cCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEeh
Confidence 8887776665 5678999999997 67899999988 66664
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.03 Score=56.90 Aligned_cols=106 Identities=19% Similarity=0.169 Sum_probs=74.0
Q ss_pred CCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEE-cCCCCEEEEEeCCCcEEEEe
Q 006229 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHF-SPDGKLLATGGHDKKAVLWC 583 (655)
Q Consensus 505 ~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~f-SpdG~lLaSgs~DgtVrIWD 583 (655)
.++-+.+|+.|+.|.+|++.--....+++ ..-...|.|..- --++.+.++++.|+.||.|+
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~------------------~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n 130 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRV------------------CSGEESIDLGIPNGRDSSLGCVGAQDGRIRACN 130 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhh------------------hcccccceeccccccccceeEEeccCCceeeec
Confidence 34678899999999999665221100000 000122222221 12566899999999999999
Q ss_pred CCCCeEEEEecccC-CCEEEEEEcCCCCEEEEE--eCCCcEEEEECCC
Q 006229 584 TESFTVKSTLEEHT-QWITDVRFSPSLSRLATS--SADRTVRVWDTEN 628 (655)
Q Consensus 584 l~t~~~l~tl~gH~-~~ItsVafsPdg~~LaSg--S~DgtVrVWDl~t 628 (655)
+.-.+.+...-.|+ ..+........+++|+++ |.|..++.|++..
T Consensus 131 ~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 131 IKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred cccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 99999888888888 677777777778888888 8899999998864
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.018 Score=66.13 Aligned_cols=74 Identities=20% Similarity=0.279 Sum_probs=63.3
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC---------------eEEEEecccCCCEEEEEEcCCCCEEEEEeCCCc
Q 006229 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESF---------------TVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620 (655)
Q Consensus 556 ~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~---------------~~l~tl~gH~~~ItsVafsPdg~~LaSgS~Dgt 620 (655)
.+..|+.|+....++++||.||.++|.-+.+- ..-.+++||...|..|.|..+...|.|+..+|.
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl 94 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL 94 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence 45789999999999999999999999866432 223478899999999999999999999999999
Q ss_pred EEEEECCCC
Q 006229 621 VRVWDTENV 629 (655)
Q Consensus 621 VrVWDl~tg 629 (655)
|.||-+-.|
T Consensus 95 IiVWmlykg 103 (1189)
T KOG2041|consen 95 IIVWMLYKG 103 (1189)
T ss_pred EEEEeeecc
Confidence 999977554
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.37 Score=51.85 Aligned_cols=74 Identities=12% Similarity=0.217 Sum_probs=56.6
Q ss_pred eeEEEEcCCCCEEEEEeC-CCcEEEEeCCC-CeEEE--EecccCCC----------EEEEEEcCCCCEEEEEeC--CCcE
Q 006229 558 VESCHFSPDGKLLATGGH-DKKAVLWCTES-FTVKS--TLEEHTQW----------ITDVRFSPSLSRLATSSA--DRTV 621 (655)
Q Consensus 558 V~sl~fSpdG~lLaSgs~-DgtVrIWDl~t-~~~l~--tl~gH~~~----------ItsVafsPdg~~LaSgS~--DgtV 621 (655)
-+.|+++++|++|+++.+ -+.|.++-+.. |.+.. .+..|.+. +.+..|.|++++|+++.- | +|
T Consensus 91 p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D-ri 169 (346)
T COG2706 91 PCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD-RI 169 (346)
T ss_pred CeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc-eE
Confidence 378999999999999876 47899998854 43322 22346666 899999999999999874 5 78
Q ss_pred EEEECCCCeEE
Q 006229 622 RVWDTENVRKL 632 (655)
Q Consensus 622 rVWDl~tg~~v 632 (655)
.+|++..|...
T Consensus 170 ~~y~~~dg~L~ 180 (346)
T COG2706 170 FLYDLDDGKLT 180 (346)
T ss_pred EEEEcccCccc
Confidence 99999976543
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.33 Score=52.76 Aligned_cols=72 Identities=13% Similarity=-0.072 Sum_probs=53.7
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCC-CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEeccc
Q 006229 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ-WITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYK 639 (655)
Q Consensus 566 dG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~-~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~ 639 (655)
++..++.++.|+.|..+|..+++.+-....... .+.+... .+.+|++++.||.|++||..+++.+..+..+.
T Consensus 278 ~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~ 350 (377)
T TIGR03300 278 DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDG 350 (377)
T ss_pred eCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC
Confidence 456778888999999999999987755432222 2222222 46799999999999999999999988877554
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=95.02 E-value=3 Score=42.47 Aligned_cols=72 Identities=18% Similarity=0.174 Sum_probs=46.4
Q ss_pred eeEEEEc-CCCCEEEEEeCCCcEEEEeCCCCeEEEEecc-----cCCCEEEEEEcCCCCEEEEEeCC--------CcEEE
Q 006229 558 VESCHFS-PDGKLLATGGHDKKAVLWCTESFTVKSTLEE-----HTQWITDVRFSPSLSRLATSSAD--------RTVRV 623 (655)
Q Consensus 558 V~sl~fS-pdG~lLaSgs~DgtVrIWDl~t~~~l~tl~g-----H~~~ItsVafsPdg~~LaSgS~D--------gtVrV 623 (655)
...+++. ++++++++ ..++ +.++|..+++....+.. .....++++++|+|++.+|.+.. |.|..
T Consensus 42 ~~G~~~~~~~g~l~v~-~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~ 119 (246)
T PF08450_consen 42 PNGMAFDRPDGRLYVA-DSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR 119 (246)
T ss_dssp EEEEEEECTTSEEEEE-ETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred CceEEEEccCCEEEEE-EcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence 5667777 67655544 4444 45559998865544432 34568999999999988887754 45777
Q ss_pred EECCCCeEE
Q 006229 624 WDTENVRKL 632 (655)
Q Consensus 624 WDl~tg~~v 632 (655)
++.. ++..
T Consensus 120 ~~~~-~~~~ 127 (246)
T PF08450_consen 120 IDPD-GKVT 127 (246)
T ss_dssp EETT-SEEE
T ss_pred ECCC-CeEE
Confidence 7777 4433
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.025 Score=66.53 Aligned_cols=70 Identities=16% Similarity=0.137 Sum_probs=50.0
Q ss_pred EcCCCCEEEEEeCCCcEEEEeC-----CCCeEEEEecccC-CCEEEEEEcCC---------CCEEEEEeC-CCcEEEEEC
Q 006229 563 FSPDGKLLATGGHDKKAVLWCT-----ESFTVKSTLEEHT-QWITDVRFSPS---------LSRLATSSA-DRTVRVWDT 626 (655)
Q Consensus 563 fSpdG~lLaSgs~DgtVrIWDl-----~t~~~l~tl~gH~-~~ItsVafsPd---------g~~LaSgS~-DgtVrVWDl 626 (655)
+||||+.|+.++.||.|++|.+ ..-+|++.++.|+ ..-.|.-|+.. ..+++++++ ...+++|..
T Consensus 243 lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~ 322 (1283)
T KOG1916|consen 243 LSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAE 322 (1283)
T ss_pred eCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeec
Confidence 6899999999999999999965 3446788888887 33323223321 235666665 445999998
Q ss_pred CCCeEE
Q 006229 627 ENVRKL 632 (655)
Q Consensus 627 ~tg~~v 632 (655)
...+|+
T Consensus 323 a~w~Cl 328 (1283)
T KOG1916|consen 323 APWQCL 328 (1283)
T ss_pred cchhhh
Confidence 888887
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.28 Score=44.77 Aligned_cols=65 Identities=25% Similarity=0.301 Sum_probs=45.3
Q ss_pred eeEEEEc---CCCC-EEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 006229 558 VESCHFS---PDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (655)
Q Consensus 558 V~sl~fS---pdG~-lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl 626 (655)
|+++++. -||. .|+.|+.|..||||+=+ +.+..+.. ++.|++++-... ..++-+..+|+|-||+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeC
Confidence 4455544 4554 89999999999999854 56667764 456777765554 66887888888766653
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.48 Score=49.31 Aligned_cols=79 Identities=13% Similarity=0.043 Sum_probs=62.6
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeee
Q 006229 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVST 645 (655)
Q Consensus 567 G~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~ 645 (655)
|..++.|+..+.+.+.++.+|..+-.+..-...=..-...+++..|..|+.|++.+.-|.++..|+....|+...+.+-
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP 141 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSP 141 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccc
Confidence 6679999999999999999997766665333222223357889999999999999999999999999888877655443
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.087 Score=40.64 Aligned_cols=34 Identities=18% Similarity=0.367 Sum_probs=30.0
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE
Q 006229 597 TQWITDVRFSPSLSRLATSSADRTVRVWDTENVRK 631 (655)
Q Consensus 597 ~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~ 631 (655)
...|.+++|||...+||.++.||.|.|+.+ ++..
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 456999999999999999999999999998 5544
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.47 Score=58.25 Aligned_cols=99 Identities=15% Similarity=0.084 Sum_probs=68.5
Q ss_pred CCCCeeEEEEcCCCCEEEEEeC---C---CcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeC--CC-cEEEE
Q 006229 554 STSKVESCHFSPDGKLLATGGH---D---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DR-TVRVW 624 (655)
Q Consensus 554 H~~~V~sl~fSpdG~lLaSgs~---D---gtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~--Dg-tVrVW 624 (655)
+.+.-..|+|-.||.+||+.+. + +.+|||+.+ |....+-+.-.+.-.+++|.|.|.+||+.-. |. .|.+|
T Consensus 208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFf 286 (928)
T PF04762_consen 208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFF 286 (928)
T ss_pred cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEE
Confidence 4445678999999999999875 2 579999976 7777776666666778999999999999875 32 34444
Q ss_pred ECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 625 DTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 625 Dl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
. ++|-....|.-... -....|..+.|++|
T Consensus 287 E-rNGLrhgeF~l~~~-~~~~~v~~l~Wn~d 315 (928)
T PF04762_consen 287 E-RNGLRHGEFTLRFD-PEEEKVIELAWNSD 315 (928)
T ss_pred e-cCCcEeeeEecCCC-CCCceeeEEEECCC
Confidence 3 56655555544321 11233567888765
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=94.41 E-value=1.1 Score=47.19 Aligned_cols=71 Identities=14% Similarity=0.092 Sum_probs=50.2
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecc-------cCCCEEEEEEcCCC------CEEEEEeCCCcEE
Q 006229 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-------HTQWITDVRFSPSL------SRLATSSADRTVR 622 (655)
Q Consensus 556 ~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~g-------H~~~ItsVafsPdg------~~LaSgS~DgtVr 622 (655)
..-+.++||||+.+||.+...|+|+|+|+....+ ..+.. -...|..+.|.+.. -.|+.-..+|.++
T Consensus 44 PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l-f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~ 122 (282)
T PF15492_consen 44 PQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL-FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLR 122 (282)
T ss_pred chheEEEECCCCcEEEEEcCCCeEEEEeccccee-EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceee
Confidence 3467899999999999999999999999975433 33332 23567777776532 2466666777777
Q ss_pred EEECC
Q 006229 623 VWDTE 627 (655)
Q Consensus 623 VWDl~ 627 (655)
=+-+.
T Consensus 123 Sy~vs 127 (282)
T PF15492_consen 123 SYLVS 127 (282)
T ss_pred eEEEE
Confidence 77653
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.86 Score=49.52 Aligned_cols=107 Identities=12% Similarity=-0.003 Sum_probs=67.2
Q ss_pred cEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 006229 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (655)
Q Consensus 507 ~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t 586 (655)
..+..++.++.|..++..+++ .+|...... ........ ++..++.++.|+.|..||.++
T Consensus 66 ~~v~v~~~~g~v~a~d~~tG~-------~~W~~~~~~------------~~~~~p~v--~~~~v~v~~~~g~l~ald~~t 124 (377)
T TIGR03300 66 GKVYAADADGTVVALDAETGK-------RLWRVDLDE------------RLSGGVGA--DGGLVFVGTEKGEVIALDAED 124 (377)
T ss_pred CEEEEECCCCeEEEEEccCCc-------EeeeecCCC------------CcccceEE--cCCEEEEEcCCCEEEEEECCC
Confidence 466677778888888766553 122211110 00011222 466788889999999999999
Q ss_pred CeEEEEecccCCCEEE-EEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEec
Q 006229 587 FTVKSTLEEHTQWITD-VRFSPSLSRLATSSADRTVRVWDTENVRKLTFICC 637 (655)
Q Consensus 587 ~~~l~tl~gH~~~Its-VafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~ 637 (655)
|+.+-...-. ..+.+ ..+ .+..++.++.|+.|..||+++|+.+-.+..
T Consensus 125 G~~~W~~~~~-~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 173 (377)
T TIGR03300 125 GKELWRAKLS-SEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSR 173 (377)
T ss_pred CcEeeeeccC-ceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEcc
Confidence 9887655422 22221 111 355777788899999999999987765543
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.95 Score=46.13 Aligned_cols=91 Identities=15% Similarity=0.111 Sum_probs=62.7
Q ss_pred CCeeEEEEcCCCCEEE-EEeCCCcEEEEeCC--CC-----eEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 006229 556 SKVESCHFSPDGKLLA-TGGHDKKAVLWCTE--SF-----TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (655)
Q Consensus 556 ~~V~sl~fSpdG~lLa-Sgs~DgtVrIWDl~--t~-----~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~ 627 (655)
...+.|+|+||++.|+ +-+..+.|..+|+. +. +....+.+-.+..-.++++.+|++.++.-..+.|.++|.+
T Consensus 134 ~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 134 GFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp SSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT
T ss_pred ccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC
Confidence 3467899999999665 55677888888885 22 1122222223347789999999988888889999999988
Q ss_pred CCeEEEEEecccceeeeeceeeEEE
Q 006229 628 NVRKLTFICCYKCIFVSTAIGSCFF 652 (655)
Q Consensus 628 tg~~v~~l~~~~~~v~s~~Vss~~F 652 (655)
|+.+..+...... +++|+|
T Consensus 214 -G~~~~~i~~p~~~-----~t~~~f 232 (246)
T PF08450_consen 214 -GKLLREIELPVPR-----PTNCAF 232 (246)
T ss_dssp -SCEEEEEE-SSSS-----EEEEEE
T ss_pred -ccEEEEEcCCCCC-----EEEEEE
Confidence 8888877766332 345666
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.017 Score=67.63 Aligned_cols=114 Identities=17% Similarity=0.161 Sum_probs=81.3
Q ss_pred cCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCC
Q 006229 498 APNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDK 577 (655)
Q Consensus 498 ss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~Dg 577 (655)
+...|...+++|+.|+..|.|+++++.+| .....+..|.++|+-|.=+.||..+++.+.-.
T Consensus 1105 Tc~afs~~~~hL~vG~~~Geik~~nv~sG-------------------~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S 1165 (1516)
T KOG1832|consen 1105 TCIAFSGGTNHLAVGSHAGEIKIFNVSSG-------------------SMEESVNCHQSAVTLVEPSVDGSTQLTSSSSS 1165 (1516)
T ss_pred eeEEeecCCceEEeeeccceEEEEEccCc-------------------cccccccccccccccccccCCcceeeeecccc
Confidence 33456677788999999999999977666 33455678999999999888999776655433
Q ss_pred --cEEEEeCC-CCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 006229 578 --KAVLWCTE-SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTF 634 (655)
Q Consensus 578 --tVrIWDl~-t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~ 634 (655)
-.-+|++. ++...++|. ...+|.|+-....-+.|+.-..+.|||+.++..+.+
T Consensus 1166 ~PlsaLW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~t 1221 (1516)
T KOG1832|consen 1166 SPLSALWDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQT 1221 (1516)
T ss_pred CchHHHhccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHH
Confidence 46699985 345555655 456788886544434444445789999999877665
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.12 Score=59.73 Aligned_cols=139 Identities=14% Similarity=0.151 Sum_probs=82.4
Q ss_pred ceeccCCCCceEEEEecCCC---------CcccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCc
Q 006229 473 TLQHNGASSKSLLMFGSDGM---------GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGF 543 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~---------~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~ 543 (655)
..+..++..+.+.+|+..+. .........+.+.+.++|.|+..+.|.++...........++.
T Consensus 46 ~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t-------- 117 (726)
T KOG3621|consen 46 EYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVT-------- 117 (726)
T ss_pred ceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeec--------
Confidence 44555666777777777652 1122334456777788888888888888744443111111111
Q ss_pred eeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC----eEEEEecccCCCEEEEEEcCCCCEEEEEeCCC
Q 006229 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF----TVKSTLEEHTQWITDVRFSPSLSRLATSSADR 619 (655)
Q Consensus 544 t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~----~~l~tl~gH~~~ItsVafsPdg~~LaSgS~Dg 619 (655)
..-+.|...|+||+|++|+..|++|..-|+|.+--+++. .....+..-...|.-|... ++.+|++...
T Consensus 118 -----~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVStl~-- 189 (726)
T KOG3621|consen 118 -----PCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVSTLT-- 189 (726)
T ss_pred -----cccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehHhhhh--
Confidence 111238889999999999999999999999998877661 1112222345556555543 3334443332
Q ss_pred cEEEEECC
Q 006229 620 TVRVWDTE 627 (655)
Q Consensus 620 tVrVWDl~ 627 (655)
...|++++
T Consensus 190 r~~Lc~tE 197 (726)
T KOG3621|consen 190 RCILCQTE 197 (726)
T ss_pred hhheeecc
Confidence 23445544
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.78 Score=45.82 Aligned_cols=74 Identities=12% Similarity=-0.008 Sum_probs=53.0
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEe-cccC---CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEeccc
Q 006229 566 DGKLLATGGHDKKAVLWCTESFTVKSTL-EEHT---QWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYK 639 (655)
Q Consensus 566 dG~lLaSgs~DgtVrIWDl~t~~~l~tl-~gH~---~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~ 639 (655)
++..++.++.|+.|+.+|..+|+.+-.+ .... ..........++..++.+..++.|..+|+++|+.+-.+....
T Consensus 75 ~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~ 152 (238)
T PF13360_consen 75 DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGE 152 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESST
T ss_pred cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCC
Confidence 3556677778889999999999988774 3221 122223333348889999999999999999999987776644
|
... |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.11 Score=62.34 Aligned_cols=70 Identities=27% Similarity=0.406 Sum_probs=55.8
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEE---EEcCCCCEEEEEeCCCcEEEEEC
Q 006229 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV---RFSPSLSRLATSSADRTVRVWDT 626 (655)
Q Consensus 555 ~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsV---afsPdg~~LaSgS~DgtVrVWDl 626 (655)
.++|+|++|+.||++++.|-.+|.|.+||+..++.++.+..|..+++.| .+..++..++|+..-|. +|.+
T Consensus 130 ~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 130 QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred CCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 4789999999999999999999999999999999999888776654443 34445567777766665 6654
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.21 Score=55.74 Aligned_cols=70 Identities=19% Similarity=0.184 Sum_probs=57.6
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCc---------------EEEEeCCCCeEEEEecccCCC--EE-EEEEcCCCCEEEEEeC
Q 006229 556 SKVESCHFSPDGKLLATGGHDKK---------------AVLWCTESFTVKSTLEEHTQW--IT-DVRFSPSLSRLATSSA 617 (655)
Q Consensus 556 ~~V~sl~fSpdG~lLaSgs~Dgt---------------VrIWDl~t~~~l~tl~gH~~~--It-sVafsPdg~~LaSgS~ 617 (655)
..|..++|||.+++|.|=+.... +.|||+.++..+..+.+-... .+ -+.|+-+..++|=..
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv- 150 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV- 150 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc-
Confidence 45899999999999999765444 999999999999999877766 66 788999888877663
Q ss_pred CCcEEEEEC
Q 006229 618 DRTVRVWDT 626 (655)
Q Consensus 618 DgtVrVWDl 626 (655)
...++|+++
T Consensus 151 ~~sl~i~e~ 159 (561)
T COG5354 151 GSSLYIHEI 159 (561)
T ss_pred cCeEEEEec
Confidence 337899996
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.94 E-value=2.4 Score=45.88 Aligned_cols=72 Identities=18% Similarity=0.235 Sum_probs=54.9
Q ss_pred eeEEEEcCCCCEEEEEeCC-CcEEEEeCCCCeEEEEec---ccCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCC
Q 006229 558 VESCHFSPDGKLLATGGHD-KKAVLWCTESFTVKSTLE---EHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENV 629 (655)
Q Consensus 558 V~sl~fSpdG~lLaSgs~D-gtVrIWDl~t~~~l~tl~---gH~~~ItsVafsPdg~~LaSgS~-DgtVrVWDl~tg 629 (655)
+-+..|.|++++|++...- -.|.+|+++.+++...-. .-...-+.|.|+|++++....++ +++|-+|.....
T Consensus 147 ~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~ 223 (346)
T COG2706 147 VHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA 223 (346)
T ss_pred cceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC
Confidence 7789999999999887642 357899998775432211 22344678999999999888886 999999999863
|
|
| >KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription] | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.1 Score=63.96 Aligned_cols=7 Identities=29% Similarity=0.354 Sum_probs=2.9
Q ss_pred HHhhcCC
Q 006229 301 AQQNLAS 307 (655)
Q Consensus 301 ~~~~~~~ 307 (655)
.|..|.+
T Consensus 2198 lQ~qLs~ 2204 (2220)
T KOG3598|consen 2198 LQMQLSA 2204 (2220)
T ss_pred HHHHhhh
Confidence 4444433
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.76 Score=51.33 Aligned_cols=97 Identities=14% Similarity=0.067 Sum_probs=71.1
Q ss_pred eeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEE-EEEE-cCCC------------
Q 006229 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWIT-DVRF-SPSL------------ 609 (655)
Q Consensus 544 t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~It-sVaf-sPdg------------ 609 (655)
.......+......+.+|+.+|++++.|+...=|.|.|+|+.++..++.++|..+.=. -+.. ....
T Consensus 296 ~l~~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~ 375 (415)
T PF14655_consen 296 PLPMRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSS 375 (415)
T ss_pred ccceEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCC
Confidence 3445566777778899999999999999987779999999999999999988765421 1111 1111
Q ss_pred ----C-EEEEEeCCCcEEEEECCCCeEEEEEecccc
Q 006229 610 ----S-RLATSSADRTVRVWDTENVRKLTFICCYKC 640 (655)
Q Consensus 610 ----~-~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~ 640 (655)
. +++=+-.-|.|-||++++|..+..+.....
T Consensus 376 ~~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v~k~ 411 (415)
T PF14655_consen 376 SRFALFLVIYAPRRGILEVWSMRQGPRVAAFNVGKG 411 (415)
T ss_pred CcceEEEEEEeccCCeEEEEecCCCCEEEEEEeCCC
Confidence 1 233455688999999999999998876543
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=93.32 E-value=3.1 Score=44.57 Aligned_cols=87 Identities=15% Similarity=0.114 Sum_probs=60.6
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCCCc-------EEEEeCCCCeEEEEe-------cccCCCEEEEEEcCCCCEEEEEe-C
Q 006229 553 ASTSKVESCHFSPDGKLLATGGHDKK-------AVLWCTESFTVKSTL-------EEHTQWITDVRFSPSLSRLATSS-A 617 (655)
Q Consensus 553 gH~~~V~sl~fSpdG~lLaSgs~Dgt-------VrIWDl~t~~~l~tl-------~gH~~~ItsVafsPdg~~LaSgS-~ 617 (655)
.|.-.|..++++++|..++..-+.+. |-+|+... .+..+ ..-...|-+|++++++.+++..| .
T Consensus 160 ~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPr 237 (305)
T PF07433_consen 160 LHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPR 237 (305)
T ss_pred ccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCC
Confidence 47778999999999987666544432 33443322 22222 23457899999999998775555 6
Q ss_pred CCcEEEEECCCCeEEEEEecccce
Q 006229 618 DRTVRVWDTENVRKLTFICCYKCI 641 (655)
Q Consensus 618 DgtVrVWDl~tg~~v~~l~~~~~~ 641 (655)
-+++.+||..+++.+......+.+
T Consensus 238 Gg~~~~~d~~tg~~~~~~~l~D~c 261 (305)
T PF07433_consen 238 GGRVAVWDAATGRLLGSVPLPDAC 261 (305)
T ss_pred CCEEEEEECCCCCEeeccccCcee
Confidence 889999999999998776655443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.30 E-value=1.5 Score=52.04 Aligned_cols=36 Identities=19% Similarity=0.402 Sum_probs=32.1
Q ss_pred eecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 006229 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (655)
Q Consensus 550 ~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~ 585 (655)
....|..+|.-+.||++|..|+|+..-|.|.+|.++
T Consensus 96 v~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 96 VVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 345789999999999999999999999999999765
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.82 Score=45.66 Aligned_cols=68 Identities=15% Similarity=0.066 Sum_probs=50.8
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEE
Q 006229 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFI 635 (655)
Q Consensus 566 dG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l 635 (655)
++..+++++.++.|..||..+|+.+-.+.. ...+...- ..++..++.++.|+.|+.+|+.+|+.+-.+
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~ 102 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSI 102 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccccccccceeeeEecccCCcceeeee
Confidence 566788889999999999999998877764 22211111 224667777778999999999999988774
|
... |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=93.09 E-value=1.2 Score=53.56 Aligned_cols=71 Identities=15% Similarity=0.163 Sum_probs=55.3
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 006229 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (655)
Q Consensus 554 H~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl 626 (655)
.....+|++-+.+| +||+|+.+|.||+||-...+....|.+-..+|..|+.+.||++|+..|.. .+.|+|+
T Consensus 576 ~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t-yLlLi~t 646 (794)
T PF08553_consen 576 SKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKT-YLLLIDT 646 (794)
T ss_pred cCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc-eEEEEEE
Confidence 34456777766666 78999999999999965555666677888999999999999997766654 5666665
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.89 E-value=0.58 Score=52.79 Aligned_cols=57 Identities=16% Similarity=0.160 Sum_probs=40.4
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 006229 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (655)
Q Consensus 567 G~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~ 627 (655)
|.+|+..+.+ .|.+||+.+++.++.+.-. .|..|.|+++|.+++-.+.| +|.|++..
T Consensus 117 G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~ 173 (443)
T PF04053_consen 117 GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYN 173 (443)
T ss_dssp SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-
T ss_pred CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEec
Confidence 8888887765 8999999999999998733 39999999999999999877 66776644
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=92.84 E-value=1.3 Score=49.13 Aligned_cols=83 Identities=19% Similarity=0.169 Sum_probs=58.6
Q ss_pred eeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe--cc------cCCCEEEEEEcC-----CC-
Q 006229 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EE------HTQWITDVRFSP-----SL- 609 (655)
Q Consensus 544 t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl--~g------H~~~ItsVafsP-----dg- 609 (655)
.+.++.-+....++|++|+.| |=-++|.|..||.+.|.|++....+..- .. ....|+++.|.. |+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred ccCchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 356666677778999999998 4559999999999999999988777652 22 345688998873 22
Q ss_pred --CEEEEEeCCCcEEEEECC
Q 006229 610 --SRLATSSADRTVRVWDTE 627 (655)
Q Consensus 610 --~~LaSgS~DgtVrVWDl~ 627 (655)
-+|+.|...|.+.+|.+.
T Consensus 154 SSi~L~vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKIL 173 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEE
T ss_pred cceEEEEEeCCCCEEEEEEe
Confidence 478889999999999774
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=92.75 E-value=0.29 Score=37.74 Aligned_cols=33 Identities=21% Similarity=0.438 Sum_probs=29.2
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCe
Q 006229 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT 588 (655)
Q Consensus 555 ~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~ 588 (655)
...|.+++|+|...+||.|..||.|.|+.+ ++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 456999999999999999999999999998 443
|
|
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=92.41 E-value=0.93 Score=52.17 Aligned_cols=73 Identities=22% Similarity=0.155 Sum_probs=46.6
Q ss_pred CCCEEEEEeCCCcEEEEeCCC----CeEEE--Eeccc--------------------CCCEEEEEEcC----CCCEEEEE
Q 006229 566 DGKLLATGGHDKKAVLWCTES----FTVKS--TLEEH--------------------TQWITDVRFSP----SLSRLATS 615 (655)
Q Consensus 566 dG~lLaSgs~DgtVrIWDl~t----~~~l~--tl~gH--------------------~~~ItsVafsP----dg~~LaSg 615 (655)
+...|+.+..||.+....... +.... .+..+ ...+.+++++. +..+|++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 666788888888877776543 11111 11111 23466677776 77899999
Q ss_pred eCCCcEEEEECCCCeEEEEEecc
Q 006229 616 SADRTVRVWDTENVRKLTFICCY 638 (655)
Q Consensus 616 S~DgtVrVWDl~tg~~v~~l~~~ 638 (655)
+.|+++||||+.++.|+.++...
T Consensus 237 ~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp ETTSEEEEEETTTTCEEEEEETT
T ss_pred eCCCeEEEEECCCCeEEEEeccc
Confidence 99999999999999998776443
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=92.00 E-value=6 Score=36.24 Aligned_cols=90 Identities=16% Similarity=0.060 Sum_probs=56.8
Q ss_pred cEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 006229 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (655)
Q Consensus 507 ~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t 586 (655)
.-|..||.|..||+|.-. ..+..+. -++.|++++-... ..|+.+-.+|+|-+|+-..
T Consensus 16 ~eLlvGs~D~~IRvf~~~---------------------e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~ 72 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGD---------------------EIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ 72 (111)
T ss_pred ceEEEecCCcEEEEEeCC---------------------cEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeCcc
Confidence 568899999999999211 1222222 2466778876655 5789999999999998532
Q ss_pred CeEEEEecccCCCEEEEEEcC---CC-CEEEEEeCCCcEE
Q 006229 587 FTVKSTLEEHTQWITDVRFSP---SL-SRLATSSADRTVR 622 (655)
Q Consensus 587 ~~~l~tl~gH~~~ItsVafsP---dg-~~LaSgS~DgtVr 622 (655)
+.- ..+ -...++++++.. || .-|++|-.+|.|-
T Consensus 73 -RlW-RiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 73 -RLW-RIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred -eee-eec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 111 112 223366666654 22 2588888888764
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=91.96 E-value=0.058 Score=61.56 Aligned_cols=71 Identities=20% Similarity=0.389 Sum_probs=52.6
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC-CeEEEEecccCCCEEEEEEcC-CCCEEEEEeCCCcEEEEE-CCC
Q 006229 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWD-TEN 628 (655)
Q Consensus 555 ~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t-~~~l~tl~gH~~~ItsVafsP-dg~~LaSgS~DgtVrVWD-l~t 628 (655)
...+.+++|-.|.+++.+|...+.|.++|++- ......+ .+..|..+..+| .+.|+++-+ |+.|-+|| .++
T Consensus 154 l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rn 227 (783)
T KOG1008|consen 154 LDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRN 227 (783)
T ss_pred ccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceeccc-cCceeeccchhh
Confidence 34566899999999999999999999999973 2222222 344556667778 777888876 99999999 444
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.93 E-value=0.67 Score=54.85 Aligned_cols=68 Identities=19% Similarity=0.338 Sum_probs=51.3
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCC-EEEEEEcCCCCEEEEEeCCCc-----EEEEECC
Q 006229 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW-ITDVRFSPSLSRLATSSADRT-----VRVWDTE 627 (655)
Q Consensus 557 ~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~-ItsVafsPdg~~LaSgS~Dgt-----VrVWDl~ 627 (655)
.|+|| ++.+..++.|+.||.|.+.+- +...++.|..|... |..+...-...+|+|.+.|+. |+|||++
T Consensus 27 ~isc~--~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~le 100 (933)
T KOG2114|consen 27 AISCC--SSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLE 100 (933)
T ss_pred ceeEE--cCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccc
Confidence 55554 677889999999999988874 45666888888887 555544434478999998765 9999986
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.51 E-value=0.35 Score=58.31 Aligned_cols=75 Identities=20% Similarity=0.126 Sum_probs=57.2
Q ss_pred CCEEEEEeCCCcEEEEeCCCC-eEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccce
Q 006229 567 GKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCI 641 (655)
Q Consensus 567 G~lLaSgs~DgtVrIWDl~t~-~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~ 641 (655)
+.+++.|+.-|.|-..|+... .....=+.-..+|++|+|+-+|++++.|-.||.|.+||+..++.++.+..+...
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap 174 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAP 174 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCc
Confidence 457888888888888887653 111111234578999999999999999999999999999998888777665543
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.09 E-value=0.24 Score=53.96 Aligned_cols=69 Identities=22% Similarity=0.308 Sum_probs=56.9
Q ss_pred EEEEeCCCCeEEEEecccCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEe
Q 006229 579 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFA 653 (655)
Q Consensus 579 VrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~-~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~ 653 (655)
|++.+..+.+....+.+|...|.+++|+|..+ +|..++.+.+|+|.|+++..++..+..+.. +.+|+|+
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~------~wSC~wD 244 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQ------IWSCCWD 244 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCC------ceeeeec
Confidence 67777777777777788999999999999877 788999999999999999888877766633 4567765
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=90.85 E-value=2.3 Score=50.83 Aligned_cols=73 Identities=27% Similarity=0.319 Sum_probs=52.4
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEeCC----------CCeE---EEEe--------cccCCCEEEEEEcCC---CCE
Q 006229 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTE----------SFTV---KSTL--------EEHTQWITDVRFSPS---LSR 611 (655)
Q Consensus 556 ~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~----------t~~~---l~tl--------~gH~~~ItsVafsPd---g~~ 611 (655)
-.|..|.++++|++|+..|..+.+.+ .+. .|+. .+++ ..+...|..+.|+|. +..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~-~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVL-ELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEE-EeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 45888999999999999888664433 331 1111 1111 134567999999996 578
Q ss_pred EEEEeCCCcEEEEECCCC
Q 006229 612 LATSSADRTVRVWDTENV 629 (655)
Q Consensus 612 LaSgS~DgtVrVWDl~tg 629 (655)
|+.-..|+++|+||+...
T Consensus 164 l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEEecCCEEEEEecCCC
Confidence 999999999999999754
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=90.82 E-value=2.5 Score=45.27 Aligned_cols=61 Identities=18% Similarity=0.217 Sum_probs=49.5
Q ss_pred EeecCCCCCeeEEEEcCCCCEEEEEeC-----CCcEEEEeCC-CCeEEEEecccCCCEEEEEEcCCCCEEEEE
Q 006229 549 QLIPASTSKVESCHFSPDGKLLATGGH-----DKKAVLWCTE-SFTVKSTLEEHTQWITDVRFSPSLSRLATS 615 (655)
Q Consensus 549 ~~l~gH~~~V~sl~fSpdG~lLaSgs~-----DgtVrIWDl~-t~~~l~tl~gH~~~ItsVafsPdg~~LaSg 615 (655)
+.|.+| -+||+||++|++.=. .|.|-|||.. +.+.+..|..|--.-..|.|.|||+.|+.+
T Consensus 50 RHFyGH------g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVA 116 (305)
T PF07433_consen 50 RHFYGH------GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVA 116 (305)
T ss_pred CEEecC------EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEE
Confidence 455677 579999999999644 4789999998 788899998887777788899999776654
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.73 E-value=12 Score=40.14 Aligned_cols=91 Identities=13% Similarity=0.072 Sum_probs=57.6
Q ss_pred EEeecCCCCCeeEEEEcCCCCEEEEEeC-CCcEEEEeCCC--C----e-EEEEecccCCCEEEEEEcCCCCEEEEEeCCC
Q 006229 548 FQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLWCTES--F----T-VKSTLEEHTQWITDVRFSPSLSRLATSSADR 619 (655)
Q Consensus 548 v~~l~gH~~~V~sl~fSpdG~lLaSgs~-DgtVrIWDl~t--~----~-~l~tl~gH~~~ItsVafsPdg~~LaSgS~Dg 619 (655)
++.+..|-..-+.|+||||++.|+.+.. .+.|.-|++.. + + ....+..+.+.--.++...+|.+-+++-.+|
T Consensus 155 ~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g 234 (307)
T COG3386 155 VRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGG 234 (307)
T ss_pred EEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCC
Confidence 3333444344468999999987777655 36777776652 1 1 1122223344455566777888776555554
Q ss_pred -cEEEEECCCCeEEEEEeccc
Q 006229 620 -TVRVWDTENVRKLTFICCYK 639 (655)
Q Consensus 620 -tVrVWDl~tg~~v~~l~~~~ 639 (655)
.|.+|+.+ |+.+..+....
T Consensus 235 ~~v~~~~pd-G~l~~~i~lP~ 254 (307)
T COG3386 235 GRVVRFNPD-GKLLGEIKLPV 254 (307)
T ss_pred ceEEEECCC-CcEEEEEECCC
Confidence 89999998 88888776663
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.67 E-value=6.5 Score=46.95 Aligned_cols=119 Identities=13% Similarity=0.105 Sum_probs=75.6
Q ss_pred cEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 006229 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (655)
Q Consensus 507 ~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t 586 (655)
..+++|=.+|.|..+ .|...+++..+. .....-.++|+.+.|..|++.++-+..-..|.+|.+..
T Consensus 138 ~~Iv~Gf~nG~V~~~---~GDi~RDrgsr~------------~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~g 202 (933)
T KOG2114|consen 138 KTIVCGFTNGLVICY---KGDILRDRGSRQ------------DYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSG 202 (933)
T ss_pred cEEEEEecCcEEEEE---cCcchhccccce------------eeeccCCCCceeeEEecCCceeEEEEecceeEEEEecC
Confidence 577888777887766 222222222221 11122357899999999998733344446788998873
Q ss_pred Ce-EEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEe-cccce
Q 006229 587 FT-VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFIC-CYKCI 641 (655)
Q Consensus 587 ~~-~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~-~~~~~ 641 (655)
.. .+.++..|...++|..|++....++.++ +..|.+||........+|. ++...
T Consensus 203 r~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~g~kk~ 258 (933)
T KOG2114|consen 203 RTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFEVGEKKE 258 (933)
T ss_pred CCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeecCCCeEE
Confidence 33 3556788888999999997555344443 4479999998655555665 54443
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=90.66 E-value=4 Score=47.89 Aligned_cols=71 Identities=14% Similarity=0.138 Sum_probs=51.8
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec-ccCCCEEEEEEc--CCCCEEEEEeCCCcEEEEEC
Q 006229 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFS--PSLSRLATSSADRTVRVWDT 626 (655)
Q Consensus 556 ~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~-gH~~~ItsVafs--Pdg~~LaSgS~DgtVrVWDl 626 (655)
.....+.-|.-++..++-+.-.++.|||++.+.....-. ...+.|.++.|. |++..+++.|.+..|.|+.-
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 344555555556655555556789999999886443222 457889999996 58899999999999999953
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=90.47 E-value=1.5 Score=44.79 Aligned_cols=65 Identities=11% Similarity=0.094 Sum_probs=51.7
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe-------c-------ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 006229 562 HFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-------E-------EHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (655)
Q Consensus 562 ~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl-------~-------gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~ 627 (655)
.+..++.+|++-..+|.+++||+.+++++..- . .....|+.+.++.+|.-|++-+ +|...+||.+
T Consensus 17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 34557889999999999999999988765322 1 3567799999999998888876 4788999876
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.24 E-value=0.15 Score=60.25 Aligned_cols=81 Identities=20% Similarity=0.157 Sum_probs=57.0
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEE-----------EcCCCCEEEEEeCCCcEEEEEC
Q 006229 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVR-----------FSPSLSRLATSSADRTVRVWDT 626 (655)
Q Consensus 558 V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVa-----------fsPdg~~LaSgS~DgtVrVWDl 626 (655)
|.-|-|-+...+++.+-.+++|++..+.+... ..|++|...+++++ ++|||+.|+.++.||.|+.|-+
T Consensus 186 V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 186 VSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred eeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 33444444667888888899999877654332 45667887777655 5899999999999999888854
Q ss_pred -----CCCeEEEEEeccc
Q 006229 627 -----ENVRKLTFICCYK 639 (655)
Q Consensus 627 -----~tg~~v~~l~~~~ 639 (655)
+...|++....|+
T Consensus 265 yi~g~~~~rclhewkphd 282 (1283)
T KOG1916|consen 265 YITGKIVHRCLHEWKPHD 282 (1283)
T ss_pred eeeccccHhhhhccCCCC
Confidence 3445555555554
|
|
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.96 E-value=3.2 Score=47.05 Aligned_cols=76 Identities=20% Similarity=0.294 Sum_probs=52.4
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEE-----Ee----CCCCeEEEEec--c---------cCCCEEEEEEcCCC---CEEE
Q 006229 557 KVESCHFSPDGKLLATGGHDKKAVL-----WC----TESFTVKSTLE--E---------HTQWITDVRFSPSL---SRLA 613 (655)
Q Consensus 557 ~V~sl~fSpdG~lLaSgs~DgtVrI-----WD----l~t~~~l~tl~--g---------H~~~ItsVafsPdg---~~La 613 (655)
.|..|..++.|..++-.|-||.+.. |- +++++..-+++ + -.-.+.-++|+|+. ..|.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 4778889999999999999987654 32 23342221111 0 11235668899975 6788
Q ss_pred EEeCCCcEEEEECCCCeEE
Q 006229 614 TSSADRTVRVWDTENVRKL 632 (655)
Q Consensus 614 SgS~DgtVrVWDl~tg~~v 632 (655)
.-+.|.+|||||+...+.+
T Consensus 185 iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred EEecCcEEEEEecCCcchh
Confidence 8889999999999876555
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=89.96 E-value=0.93 Score=51.38 Aligned_cols=108 Identities=18% Similarity=0.154 Sum_probs=70.0
Q ss_pred cccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcE
Q 006229 500 NQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKA 579 (655)
Q Consensus 500 ~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtV 579 (655)
..+.+.+++|++-|....+..|. +.......+||+.+|...+.+.++++......-+.||.|++++|.-.. ..|
T Consensus 255 idfSP~EkYLVT~s~~p~~~~~~-----d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~si 328 (698)
T KOG2314|consen 255 IDFSPNEKYLVTYSPEPIIVEED-----DNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSI 328 (698)
T ss_pred eecCCccceEEEecCCccccCcc-----cCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceE
Confidence 35677777877766554443342 112233466777776555555555555555567899999999998776 568
Q ss_pred EEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEE
Q 006229 580 VLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA 613 (655)
Q Consensus 580 rIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~La 613 (655)
.|++..+..++..-.---..|....|+|.+..||
T Consensus 329 sIyEtpsf~lld~Kslki~gIr~FswsP~~~llA 362 (698)
T KOG2314|consen 329 SIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLA 362 (698)
T ss_pred EEEecCceeeecccccCCccccCcccCCCcceEE
Confidence 8999887655432222345678888888877766
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=89.73 E-value=7.1 Score=48.21 Aligned_cols=83 Identities=12% Similarity=0.127 Sum_probs=63.4
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCCcEEEE----eCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 006229 554 STSKVESCHFSPDGKLLATGGHDKKAVLW----CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENV 629 (655)
Q Consensus 554 H~~~V~sl~fSpdG~lLaSgs~DgtVrIW----Dl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg 629 (655)
..+.|.++.|-+|..-|+.+..+|.|.+. |..+.... ..-.-+..|.+++||||...|+..+.+++|.+-+ ++.
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E-~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt-~~f 151 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIE-IVGSVDSGILAASWSPDEELLALVTGEGNLLLMT-RDF 151 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeE-EEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEe-ccc
Confidence 34789999999999999999999999998 55443322 2223567899999999999999999999988775 556
Q ss_pred eEEEEEecc
Q 006229 630 RKLTFICCY 638 (655)
Q Consensus 630 ~~v~~l~~~ 638 (655)
+.+....-+
T Consensus 152 d~i~E~~l~ 160 (928)
T PF04762_consen 152 DPISEVPLD 160 (928)
T ss_pred eEEEEeecC
Confidence 666554433
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=89.22 E-value=2.3 Score=49.61 Aligned_cols=63 Identities=16% Similarity=0.104 Sum_probs=47.2
Q ss_pred CCCCEEEEEeCCCcEEEEeCCC-----CeEEEEecccCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCe
Q 006229 565 PDGKLLATGGHDKKAVLWCTES-----FTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENVR 630 (655)
Q Consensus 565 pdG~lLaSgs~DgtVrIWDl~t-----~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~-DgtVrVWDl~tg~ 630 (655)
++|++... .+++|.+.|..+ .+.+..+. -......|.++|||++++.++. +.+|.|.|+.+.+
T Consensus 286 kdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k 354 (635)
T PRK02888 286 KAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD 354 (635)
T ss_pred hCCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence 46776665 367899999988 34444443 5556788999999999777664 8999999998754
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=89.13 E-value=1.5 Score=47.61 Aligned_cols=67 Identities=18% Similarity=0.246 Sum_probs=48.7
Q ss_pred cCCCCEEEEE---------eCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE
Q 006229 564 SPDGKLLATG---------GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKL 632 (655)
Q Consensus 564 SpdG~lLaSg---------s~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v 632 (655)
|||+++++.. +..+.+.|+|+.+++....... ...+....|||+|+.|+-.. |+.|.++++.++...
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~ 76 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQET 76 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeE
Confidence 5777766653 2245788999999776654443 67899999999999999886 578999998877444
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=88.47 E-value=3.1 Score=46.77 Aligned_cols=74 Identities=19% Similarity=0.195 Sum_probs=46.5
Q ss_pred EEEEcCCCCEEEEEeC-CCc--EEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCC-Cc--EEEEECCCCeEEE
Q 006229 560 SCHFSPDGKLLATGGH-DKK--AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-RT--VRVWDTENVRKLT 633 (655)
Q Consensus 560 sl~fSpdG~lLaSgs~-Dgt--VrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~D-gt--VrVWDl~tg~~v~ 633 (655)
.=.|+|||++|+-.+. .|. |.+.|++.... ..+......-.+-.|+|||++|+..+.+ |. |-+.|+.++..++
T Consensus 286 ~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~ 364 (425)
T COG0823 286 SPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIR 364 (425)
T ss_pred CccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEE
Confidence 5578999997777654 343 55566666544 2333233333378899999998888753 43 6666766555433
Q ss_pred E
Q 006229 634 F 634 (655)
Q Consensus 634 ~ 634 (655)
.
T Consensus 365 ~ 365 (425)
T COG0823 365 I 365 (425)
T ss_pred E
Confidence 3
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=88.42 E-value=6.7 Score=43.66 Aligned_cols=78 Identities=19% Similarity=0.185 Sum_probs=55.1
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEeCCC-------------------------------------------CeEEEEe
Q 006229 557 KVESCHFSPDGKLLATGGHDKKAVLWCTES-------------------------------------------FTVKSTL 593 (655)
Q Consensus 557 ~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t-------------------------------------------~~~l~tl 593 (655)
.|+++.|+++..-|++|-..|.|.||-... ......+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 478888888888888888888888873210 0122233
Q ss_pred cccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEE
Q 006229 594 EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFI 635 (655)
Q Consensus 594 ~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l 635 (655)
....+.|++|+.| |=-++|.|..||++.|.|+|.+..+..-
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~ 123 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNE 123 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeec
Confidence 3457889999987 6679999999999999999998888663
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=88.34 E-value=1.5 Score=33.25 Aligned_cols=31 Identities=35% Similarity=0.535 Sum_probs=26.1
Q ss_pred CCeeEEEEcCCC---CEEEEEeCCCcEEEEeCCC
Q 006229 556 SKVESCHFSPDG---KLLATGGHDKKAVLWCTES 586 (655)
Q Consensus 556 ~~V~sl~fSpdG---~lLaSgs~DgtVrIWDl~t 586 (655)
++|.+|.|||+. .+|+-+-+-+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468999999844 4888888889999999985
|
It contains a characteristic DLL sequence motif. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=88.12 E-value=5.4 Score=46.73 Aligned_cols=63 Identities=14% Similarity=0.030 Sum_probs=42.1
Q ss_pred CeeEEEEcCCCCEEEEEeCC-CcEEEE-----------eCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 006229 557 KVESCHFSPDGKLLATGGHD-KKAVLW-----------CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623 (655)
Q Consensus 557 ~V~sl~fSpdG~lLaSgs~D-gtVrIW-----------Dl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrV 623 (655)
..++-.|+|||++|++.+.. ..+++. +++.++... .....|..++|+|||.+|+-.. ++.|.|
T Consensus 398 ~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~V 472 (591)
T PRK13616 398 SLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYL 472 (591)
T ss_pred CCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence 37788999999988777533 223332 443333322 2356799999999999988766 466666
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=88.03 E-value=1.7 Score=33.02 Aligned_cols=31 Identities=26% Similarity=0.291 Sum_probs=26.1
Q ss_pred CCEEEEEEcCCC---CEEEEEeCCCcEEEEECCC
Q 006229 598 QWITDVRFSPSL---SRLATSSADRTVRVWDTEN 628 (655)
Q Consensus 598 ~~ItsVafsPdg---~~LaSgS~DgtVrVWDl~t 628 (655)
+.|.+++|+|+. .+|+-+-.-+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468999999854 4888888888999999995
|
It contains a characteristic DLL sequence motif. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=87.64 E-value=2.8 Score=46.16 Aligned_cols=72 Identities=18% Similarity=0.105 Sum_probs=48.3
Q ss_pred eeEEEEcCCCCEEEEE-eCC----CcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCC-----------cE
Q 006229 558 VESCHFSPDGKLLATG-GHD----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR-----------TV 621 (655)
Q Consensus 558 V~sl~fSpdG~lLaSg-s~D----gtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~Dg-----------tV 621 (655)
+..+.+||||++||-+ +.. .+|+|+|+++++.+...-.. .....+.|.++++.|+-...|. .|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 3467899999987764 232 46999999999776532111 1223499999988776665433 38
Q ss_pred EEEECCCCe
Q 006229 622 RVWDTENVR 630 (655)
Q Consensus 622 rVWDl~tg~ 630 (655)
++|++.++.
T Consensus 205 ~~~~~gt~~ 213 (414)
T PF02897_consen 205 YRHKLGTPQ 213 (414)
T ss_dssp EEEETTS-G
T ss_pred EEEECCCCh
Confidence 888887653
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PRK10350 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=86.76 E-value=2 Score=39.79 Aligned_cols=8 Identities=50% Similarity=0.642 Sum_probs=3.6
Q ss_pred hhh-hHHHh
Q 006229 76 ASY-IESQV 83 (655)
Q Consensus 76 ~qY-iq~Qq 83 (655)
.-| |..++
T Consensus 29 pGY~ipSQQ 37 (145)
T PRK10350 29 PGYQIPSQQ 37 (145)
T ss_pred CCCcCcHHH
Confidence 346 44443
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=86.18 E-value=6 Score=46.51 Aligned_cols=72 Identities=17% Similarity=0.269 Sum_probs=51.9
Q ss_pred CCCCCeeEEEEcC--CCCEEEEEeCCCcEEEEeCC---------CCeEEEEe--cccC-CCEEEEEEcCCCCEEEEEeCC
Q 006229 553 ASTSKVESCHFSP--DGKLLATGGHDKKAVLWCTE---------SFTVKSTL--EEHT-QWITDVRFSPSLSRLATSSAD 618 (655)
Q Consensus 553 gH~~~V~sl~fSp--dG~lLaSgs~DgtVrIWDl~---------t~~~l~tl--~gH~-~~ItsVafsPdg~~LaSgS~D 618 (655)
...+.|.+++|.. ||..+++.|..+.|.++.-. +...++.+ ..|+ ..|.+.+|.++|.+++.++
T Consensus 70 ~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG-- 147 (631)
T PF12234_consen 70 SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG-- 147 (631)
T ss_pred cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--
Confidence 4567899999975 88899999999999998431 22233333 3555 6899999999998776654
Q ss_pred CcEEEEEC
Q 006229 619 RTVRVWDT 626 (655)
Q Consensus 619 gtVrVWDl 626 (655)
..+.|+|-
T Consensus 148 Nqlfv~dk 155 (631)
T PF12234_consen 148 NQLFVFDK 155 (631)
T ss_pred CEEEEECC
Confidence 35667664
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=85.09 E-value=6.7 Score=48.44 Aligned_cols=67 Identities=21% Similarity=0.263 Sum_probs=49.7
Q ss_pred eEEEEcCCCCEEEEE-----eCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEe---CCCcEEEEEC
Q 006229 559 ESCHFSPDGKLLATG-----GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS---ADRTVRVWDT 626 (655)
Q Consensus 559 ~sl~fSpdG~lLaSg-----s~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS---~DgtVrVWDl 626 (655)
++|+|--||.++|+. ...++|+|||.+ |.+-.+-+.-...=.+++|-|.|..+++-- .|..|.++.-
T Consensus 199 ~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr 273 (1265)
T KOG1920|consen 199 TSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER 273 (1265)
T ss_pred ceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEec
Confidence 469999999999983 333899999987 554444444455567899999999999854 3557888863
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=84.74 E-value=5.2 Score=46.91 Aligned_cols=97 Identities=19% Similarity=0.144 Sum_probs=55.1
Q ss_pred CCeeEEEEcCCCCEEEEEe------CCCcEEEE--eCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCC-CcEEEEEC
Q 006229 556 SKVESCHFSPDGKLLATGG------HDKKAVLW--CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-RTVRVWDT 626 (655)
Q Consensus 556 ~~V~sl~fSpdG~lLaSgs------~DgtVrIW--Dl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~D-gtVrVWDl 626 (655)
..|.+.++||||+.++..- .|..-.|| +.. +.......+. ..++-.|+|+|..|++.+.. ..+++.+-
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecCC--CCCCceECCCCCceEEEecCcceEEEecc
Confidence 4578899999999777665 34444455 542 2222223333 38889999999988888643 23444443
Q ss_pred CCCeEEEEEecccce---eeeeceeeEEEecC
Q 006229 627 ENVRKLTFICCYKCI---FVSTAIGSCFFAPT 655 (655)
Q Consensus 627 ~tg~~v~~l~~~~~~---v~s~~Vss~~F~P~ 655 (655)
.....+..+...... .....|.++.|+||
T Consensus 427 ~~~gql~~~~vd~ge~~~~~~g~Issl~wSpD 458 (591)
T PRK13616 427 PATGQLARTPVDASAVASRVPGPISELQLSRD 458 (591)
T ss_pred CCCceEEEEeccCchhhhccCCCcCeEEECCC
Confidence 222222222111111 11334788888886
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=84.68 E-value=2.2 Score=51.28 Aligned_cols=59 Identities=15% Similarity=0.186 Sum_probs=43.8
Q ss_pred CcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 006229 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (655)
Q Consensus 506 ~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl 584 (655)
+-+|+.||.+|.||+|+.. + .+....+.+-..+|..|+.+.||+||+..| +..|-|+|+
T Consensus 588 ~G~iavgs~~G~IRLyd~~-g------------------~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 588 DGYIAVGSNKGDIRLYDRL-G------------------KRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred CceEEEEeCCCcEEeeccc-c------------------hhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 3678999999999999411 1 123345567778999999999999987766 466777775
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor [] | Back alignment and domain information |
|---|
Probab=84.50 E-value=0.17 Score=43.35 Aligned_cols=57 Identities=18% Similarity=0.170 Sum_probs=42.6
Q ss_pred hhhhhhhhhcccc-----------cc---cchhhhhHH-HHHHHH-HHhhcCCCCccchhhhhhhhhhccCCc
Q 006229 271 LDQFRSGLLQQQK-----------SL---TQPYNQLQL-QQLMLQ-AQQNLASPSANDLESRKLRMLHNSRNM 327 (655)
Q Consensus 271 ~~~~~~~~~~~~~-----------~~---~~~~~~~~~-~q~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (655)
||++|.+|..+.. |. .+|.+.|++ ++.|+. .++..+....|+-|+.|||..|++||.
T Consensus 6 Ld~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe~r~~ 78 (79)
T PF08581_consen 6 LDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELEQRGR 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 6899999844332 22 777777776 777666 555556677899999999999999974
|
; PDB: 3VP9_B 3VP8_B. |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=84.48 E-value=6.6 Score=42.72 Aligned_cols=80 Identities=14% Similarity=0.082 Sum_probs=53.1
Q ss_pred eEEEEcCCCCEEEEEeC---C-------CcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCC-EEEEEe-CCCcEEEEEC
Q 006229 559 ESCHFSPDGKLLATGGH---D-------KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSS-ADRTVRVWDT 626 (655)
Q Consensus 559 ~sl~fSpdG~lLaSgs~---D-------gtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~-~LaSgS-~DgtVrVWDl 626 (655)
--+++++....|++--+ + ..|.++|+.+++.+..+.- ...|.+|..+-+.. +|++.+ .|+.|.|||.
T Consensus 241 Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~ 319 (342)
T PF06433_consen 241 QLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDA 319 (342)
T ss_dssp S-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEET
T ss_pred eeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeC
Confidence 35677765544444211 1 1477889999999998862 33588999998776 665554 5899999999
Q ss_pred CCCeEEEEEeccc
Q 006229 627 ENVRKLTFICCYK 639 (655)
Q Consensus 627 ~tg~~v~~l~~~~ 639 (655)
.+|+.++.+..-.
T Consensus 320 ~tGk~~~~~~~lG 332 (342)
T PF06433_consen 320 ATGKLVRSIEQLG 332 (342)
T ss_dssp TT--EEEEE---S
T ss_pred cCCcEEeehhccC
Confidence 9999999887543
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=84.46 E-value=9.5 Score=44.69 Aligned_cols=70 Identities=17% Similarity=0.165 Sum_probs=52.1
Q ss_pred eeEEEEcCCCCEEEEEe-CCCcEEEEeCCCCeE------------EEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 006229 558 VESCHFSPDGKLLATGG-HDKKAVLWCTESFTV------------KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (655)
Q Consensus 558 V~sl~fSpdG~lLaSgs-~DgtVrIWDl~t~~~------------l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVW 624 (655)
.-.|+++|||+++++++ .+.+|.|.|+.+.+. ....+- .-.-...+|+++|....|.-.|..|-.|
T Consensus 323 PHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kw 401 (635)
T PRK02888 323 PHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKW 401 (635)
T ss_pred ccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEE
Confidence 45789999999777765 589999999987552 222221 1122457789999888888899999999
Q ss_pred ECCC
Q 006229 625 DTEN 628 (655)
Q Consensus 625 Dl~t 628 (655)
|+..
T Consensus 402 n~~~ 405 (635)
T PRK02888 402 NIEA 405 (635)
T ss_pred ehHH
Confidence 9875
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.16 E-value=4.4 Score=46.07 Aligned_cols=67 Identities=13% Similarity=0.120 Sum_probs=50.6
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 006229 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (655)
Q Consensus 558 V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl 626 (655)
..|++-..+| +||.||.+|.||+||.-..+....|.|-..+|+.|..+.+|++|+..|.. .+.|-|+
T Consensus 433 Fsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t-yLlLi~t 499 (644)
T KOG2395|consen 433 FSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKT-YLLLIDT 499 (644)
T ss_pred cceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEeccc-EEEEEEE
Confidence 4555555455 89999999999999984445566778899999999999999997766554 4444444
|
|
| >PF11498 Activator_LAG-3: Transcriptional activator LAG-3; InterPro: IPR021587 The C | Back alignment and domain information |
|---|
Probab=83.45 E-value=0.35 Score=51.67 Aligned_cols=9 Identities=11% Similarity=0.338 Sum_probs=0.0
Q ss_pred cccCCCCCC
Q 006229 127 DSTQHLNDT 135 (655)
Q Consensus 127 ~~~~~~~~~ 135 (655)
...+.+||.
T Consensus 377 qQq~qmngg 385 (468)
T PF11498_consen 377 QQQHQMNGG 385 (468)
T ss_dssp ---------
T ss_pred hhhhhcccc
Confidence 334446653
|
elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12 []. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1 []. ; PDB: 2FO1_D. |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=83.43 E-value=18 Score=38.03 Aligned_cols=71 Identities=18% Similarity=0.229 Sum_probs=46.9
Q ss_pred CCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 006229 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (655)
Q Consensus 505 ~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl 584 (655)
.++|++.|+..+.+.+..+.++. .+|. +..+. +-++. ....+++.++..|++|++....|.
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs-------~~w~---------f~~~~--~vk~~-a~~d~~~glIycgshd~~~yalD~ 122 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGS-------QIWN---------FVILE--TVKVR-AQCDFDGGLIYCGSHDGNFYALDP 122 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchh-------heee---------eeehh--hhccc-eEEcCCCceEEEecCCCcEEEecc
Confidence 45788888888888777555542 1121 11111 01121 223567899999999999999999
Q ss_pred CCCeEEEEec
Q 006229 585 ESFTVKSTLE 594 (655)
Q Consensus 585 ~t~~~l~tl~ 594 (655)
++..++...+
T Consensus 123 ~~~~cVyksk 132 (354)
T KOG4649|consen 123 KTYGCVYKSK 132 (354)
T ss_pred cccceEEecc
Confidence 9988887765
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=83.11 E-value=19 Score=39.45 Aligned_cols=70 Identities=10% Similarity=-0.009 Sum_probs=48.9
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEecccC-CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEec
Q 006229 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICC 637 (655)
Q Consensus 566 dG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~-~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~ 637 (655)
++..|+.++.|+.|..+|..+++.+-....-. ....+..+ .+.+|+.++.||.|.+.|..+|+.+.....
T Consensus 293 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~ 363 (394)
T PRK11138 293 DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKV 363 (394)
T ss_pred ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEc
Confidence 35677778889999999999987654332111 11222222 266888899999999999999998866654
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=82.60 E-value=0.26 Score=56.48 Aligned_cols=104 Identities=17% Similarity=0.239 Sum_probs=76.4
Q ss_pred cEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcC-CCCEEEEEe----CCCcEEE
Q 006229 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGG----HDKKAVL 581 (655)
Q Consensus 507 ~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSp-dG~lLaSgs----~DgtVrI 581 (655)
..++.|+.+|.|.+.......+. ......+|...++|++|++ |..+||.|- .|..++|
T Consensus 71 cIlavG~atG~I~l~s~r~~hdS-----------------s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~I 133 (783)
T KOG1008|consen 71 CILAVGSATGNISLLSVRHPHDS-----------------SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKI 133 (783)
T ss_pred hhhhhccccCceEEeecCCcccc-----------------cceecccccccccccccccccHHHHHhhhhhhcccCCccc
Confidence 56789999999998855544221 1112356778899999999 777888773 2567999
Q ss_pred EeCCCC--eEEE--Eec-ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 006229 582 WCTESF--TVKS--TLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (655)
Q Consensus 582 WDl~t~--~~l~--tl~-gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~ 627 (655)
||+.++ .+.. .|. +......++||..+.+++.+|..-+.|+++|+|
T Consensus 134 wdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlR 184 (783)
T KOG1008|consen 134 WDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLR 184 (783)
T ss_pred eecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhh
Confidence 999876 1111 222 355667799999899999999999999999998
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.32 E-value=3.9 Score=41.92 Aligned_cols=95 Identities=14% Similarity=0.120 Sum_probs=58.2
Q ss_pred eeccCCCCceEEEEecCCCCcc----ccc----Cc--ccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCc
Q 006229 474 LQHNGASSKSLLMFGSDGMGSL----TSA----PN--QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGF 543 (655)
Q Consensus 474 ~~~s~S~d~s~l~ws~dg~~~l----ass----s~--~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~ 543 (655)
.+..+..+..+.+|.+...+.+ .+. .+ .....+.+..+++.|+.|+.|...-.
T Consensus 72 ~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~----------------- 134 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPN----------------- 134 (238)
T ss_pred eEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccC-----------------
Confidence 4455566777777777642211 111 11 11233347788889999999943322
Q ss_pred eeeeEEeecCCC-CCeeEEEEcCCCCEEEEE--eCCCcEEEEeCCCC
Q 006229 544 TFTEFQLIPAST-SKVESCHFSPDGKLLATG--GHDKKAVLWCTESF 587 (655)
Q Consensus 544 t~~~v~~l~gH~-~~V~sl~fSpdG~lLaSg--s~DgtVrIWDl~t~ 587 (655)
+.+...-.|+ ..+..+..+..++.|+.+ |+|..++.|++...
T Consensus 135 --k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 135 --KVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred --ceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 3344444566 566667777777788888 88888999988643
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.37 E-value=17 Score=37.77 Aligned_cols=54 Identities=15% Similarity=0.035 Sum_probs=43.0
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCC--CCEEEEEeC
Q 006229 564 SPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS--LSRLATSSA 617 (655)
Q Consensus 564 SpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPd--g~~LaSgS~ 617 (655)
..+|++.+++-.-++|.-.|..+|+.+.++.--+..|+|+||--- ..+.+|+..
T Consensus 220 D~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~aa 275 (310)
T KOG4499|consen 220 DTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVTTAA 275 (310)
T ss_pred ccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEEehh
Confidence 557888888888899999999999999999888999999999642 224445544
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.11 E-value=16 Score=40.30 Aligned_cols=75 Identities=20% Similarity=0.216 Sum_probs=57.1
Q ss_pred CeeEEEEcCCCCEEEEEeC---CCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeEE
Q 006229 557 KVESCHFSPDGKLLATGGH---DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENVRKL 632 (655)
Q Consensus 557 ~V~sl~fSpdG~lLaSgs~---DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS-~DgtVrVWDl~tg~~v 632 (655)
.-..++|+++++.+..+.. +++|.+.|..+.+.+.+..--... ..++++|+|..++.+. .+++|.+.|..+....
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~ 195 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVV 195 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCccee
Confidence 4557999999987666655 689999999998888775433334 8899999999665555 7889999997765444
|
|
| >PF11498 Activator_LAG-3: Transcriptional activator LAG-3; InterPro: IPR021587 The C | Back alignment and domain information |
|---|
Probab=80.42 E-value=0.53 Score=50.37 Aligned_cols=6 Identities=50% Similarity=0.584 Sum_probs=0.0
Q ss_pred CchHHH
Q 006229 49 GGFLFE 54 (655)
Q Consensus 49 ~~fL~E 54 (655)
+.||.|
T Consensus 276 D~~L~e 281 (468)
T PF11498_consen 276 DTFLNE 281 (468)
T ss_dssp ------
T ss_pred HHHHhh
Confidence 345554
|
elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12 []. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1 []. ; PDB: 2FO1_D. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=80.22 E-value=46 Score=34.71 Aligned_cols=100 Identities=10% Similarity=0.199 Sum_probs=56.4
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCe------EEEEec-----ccCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 006229 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFT------VKSTLE-----EHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (655)
Q Consensus 556 ~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~------~l~tl~-----gH~~~ItsVafsPdg~~LaSgS~DgtVrVW 624 (655)
+-.-.|.+..++.++++--.++.+.++++.... ....+. .+...+-.|+|+|.+..|+.+-...-.+||
T Consensus 65 ~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~ 144 (248)
T PF06977_consen 65 GDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLY 144 (248)
T ss_dssp SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEE
T ss_pred CCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhE
Confidence 346678888788777766668999999883211 111121 355668999999998888888887777777
Q ss_pred ECCC---CeEEEEEe--ccc-ceeeeeceeeEEEecC
Q 006229 625 DTEN---VRKLTFIC--CYK-CIFVSTAIGSCFFAPT 655 (655)
Q Consensus 625 Dl~t---g~~v~~l~--~~~-~~v~s~~Vss~~F~P~ 655 (655)
.+.. ...+.... ... .......++++.|||.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~ 181 (248)
T PF06977_consen 145 EVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPR 181 (248)
T ss_dssp EEESTT-SS--EEEE-HHHH-HT--SS---EEEEETT
T ss_pred EEccccCccceeeccccccccccceeccccceEEcCC
Confidence 7754 22222221 111 3344556788888884
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=80.14 E-value=30 Score=40.20 Aligned_cols=68 Identities=19% Similarity=0.315 Sum_probs=46.0
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCC--CCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCC-cEEEEECCC
Q 006229 560 SCHFSPDGKLLATGGHDKKAVLWCTE--SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR-TVRVWDTEN 628 (655)
Q Consensus 560 sl~fSpdG~lLaSgs~DgtVrIWDl~--t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~Dg-tVrVWDl~t 628 (655)
.|.|||....|+.=.....-.+++++ +.+...-+ .-.+.|.|.||..||.+|+.+-... .-+|||-..
T Consensus 117 GCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 117 GCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred cccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 57899988877765544444566654 33344444 3567899999999999877665432 378998653
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 655 | ||||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 2e-10 | ||
| 2hes_X | 330 | Cytosolic Iron-sulphur Assembly Protein- 1 Length = | 3e-07 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 5e-07 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 5e-07 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 2e-06 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 5e-06 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 7e-06 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 7e-06 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 1e-05 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 2e-05 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 2e-05 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 3e-05 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 3e-05 | ||
| 3jro_A | 753 | Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice | 3e-05 | ||
| 3jrp_A | 379 | Sec13 With Nup145c (Aa109-179) Insertion Blade Leng | 6e-05 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 7e-05 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 7e-05 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 7e-05 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 7e-05 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 7e-05 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 7e-05 | ||
| 2pm6_B | 297 | Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF | 7e-05 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 8e-05 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 8e-05 | ||
| 3cfs_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 8e-05 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 8e-05 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 8e-05 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 8e-05 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 8e-05 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 8e-05 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 8e-05 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 9e-05 | ||
| 3cfv_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 9e-05 | ||
| 2pm9_B | 297 | Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O | 1e-04 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 1e-04 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 2e-04 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 2e-04 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 2e-04 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 2e-04 | ||
| 2pm7_B | 297 | Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF | 4e-04 | ||
| 2yba_A | 422 | Crystal Structure Of Nurf55 In Complex With Histone | 4e-04 | ||
| 1nr0_A | 611 | Two Seven-Bladed Beta-Propeller Domains Revealed By | 4e-04 | ||
| 3c99_A | 432 | Structural Basis Of Histone H4 Recognition By P55 L | 4e-04 | ||
| 2xyi_A | 430 | Crystal Structure Of Nurf55 In Complex With A H4 Pe | 5e-04 | ||
| 3gfc_A | 425 | Crystal Structure Of Histone-Binding Protein Rbbp4 | 6e-04 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 6e-04 |
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753 | Back alignment and structure |
|
| >pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Selenomethionine Version Length = 297 | Back alignment and structure |
|
| >pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422 | Back alignment and structure |
|
| >pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611 | Back alignment and structure |
|
| >pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432 | Back alignment and structure |
|
| >pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430 | Back alignment and structure |
|
| >pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 655 | |||
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.86 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.84 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.84 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.83 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.82 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.82 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.82 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.82 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.81 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.81 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.81 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.81 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.8 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.8 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.79 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.79 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.79 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.79 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.79 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.79 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.79 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.78 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.78 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.77 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.77 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.77 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.76 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.76 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.76 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.76 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.76 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.76 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.76 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.76 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.75 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.75 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.75 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.74 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.74 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.74 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.73 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.73 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.73 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.73 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.73 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.72 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.72 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.71 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.71 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.71 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.71 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.71 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.71 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.7 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.7 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.7 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.7 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.7 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.7 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.69 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.69 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.69 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.69 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.68 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.68 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.68 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.68 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.68 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.68 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.68 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.68 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.67 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.67 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.67 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.67 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.67 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.67 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.67 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.66 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.66 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.66 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.66 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.66 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.66 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.65 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.65 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.65 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.65 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.65 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.65 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.65 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.65 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.65 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.64 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.64 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.64 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.64 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.63 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.63 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.63 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.63 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.63 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.63 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.62 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.62 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.62 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.62 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.61 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.6 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.6 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.6 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.6 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.59 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.59 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.59 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.58 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.58 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.57 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.57 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.57 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.57 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.56 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.55 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.44 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.43 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.42 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.41 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.41 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.25 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.23 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.15 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.15 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.13 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.11 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.1 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.09 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.08 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.07 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.03 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.01 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 98.99 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 98.99 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 98.99 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 98.97 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 98.97 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 98.97 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 98.96 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 98.95 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 98.94 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 98.93 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 98.93 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 98.86 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 98.86 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 98.85 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 98.83 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 98.81 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 98.79 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 98.79 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 98.78 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 98.78 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 98.71 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 98.7 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 98.66 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 98.64 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 98.57 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 98.54 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 98.53 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 98.51 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 98.5 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 98.5 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 98.47 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 98.47 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 98.46 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 98.43 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 98.4 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 98.39 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 98.38 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 98.31 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 98.29 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 98.27 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 98.27 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 98.22 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.14 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 98.09 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 98.09 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 98.09 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 98.09 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 98.08 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 98.06 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 98.06 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 98.05 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 98.04 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 97.93 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 97.87 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 97.81 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 97.78 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 97.77 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 97.77 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 97.73 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 97.66 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 97.64 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 97.59 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 97.59 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 97.57 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 97.53 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 97.53 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 97.52 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 97.49 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 97.4 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 97.37 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 97.3 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 97.3 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 97.29 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 97.26 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 97.21 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 97.14 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 97.09 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 97.07 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 97.02 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 96.97 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 96.96 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 96.95 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 96.87 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 96.86 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 96.7 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 96.68 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 96.58 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 96.53 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 96.09 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 95.85 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 95.75 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 95.71 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 95.64 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 95.47 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 95.43 | |
| 3iot_A | 449 | Maltose-binding protein, huntingtin fusion protei; | 95.4 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 95.28 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 95.22 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 95.19 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 95.17 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 95.09 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 95.06 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 94.78 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 94.78 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 94.77 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 94.61 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 94.58 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 94.42 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 94.42 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 94.34 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 94.16 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 94.0 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 93.85 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 93.37 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 93.1 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 92.92 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 92.84 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 92.0 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 91.98 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 91.7 | |
| 3vp9_A | 92 | General transcriptional corepressor TUP1; four hel | 91.37 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 91.24 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 91.22 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 90.96 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 90.89 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 90.75 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 90.54 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 90.33 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 90.1 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 89.82 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 89.42 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 89.14 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 89.07 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 88.06 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 88.04 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 87.66 | |
| 1uuj_A | 88 | Platelet-activating factor acetylhydrolase IB ALP | 86.77 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 86.76 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 86.76 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 85.66 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 85.35 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 85.03 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 84.51 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 84.33 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 84.0 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 83.48 | |
| 2xtc_A | 90 | F-box-like/WD repeat-containing protein TBL1X; tra | 83.46 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 82.84 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 82.71 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 82.62 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 81.8 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 81.78 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 81.76 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 81.29 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 80.52 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 80.15 |
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-20 Score=196.11 Aligned_cols=175 Identities=16% Similarity=0.288 Sum_probs=141.5
Q ss_pred ceeccCCCCceEEEEecCCCCc--------ccccCcccCCCCcEEEeccCCCcEEEEecCCCC-----------------
Q 006229 473 TLQHNGASSKSLLMFGSDGMGS--------LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDA----------------- 527 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~~--------lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~----------------- 527 (655)
..+.+++.|+.+.+|+...... ..+....+.+.+.+|++|+.|+.|++|+...+.
T Consensus 93 ~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~ 172 (321)
T 3ow8_A 93 PIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAY 172 (321)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEE
T ss_pred CEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEE
Confidence 4667777888888888764211 112223456667888888888888888765442
Q ss_pred ---------CCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCC
Q 006229 528 ---------DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ 598 (655)
Q Consensus 528 ---------d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~ 598 (655)
...+..+++|+..++ +.+..+.+|...|.+|+|+|++++|++|+.|++|+|||+++++++.++.+|..
T Consensus 173 spdg~~lasg~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~ 249 (321)
T 3ow8_A 173 SPDGKYLASGAIDGIINIFDIATG---KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHAS 249 (321)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTT---EEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSS
T ss_pred CCCCCEEEEEcCCCeEEEEECCCC---cEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCC
Confidence 112444567776655 56778899999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 599 WITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 599 ~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
.|++|+|+|++.+|+||+.|++|+|||+++++++.++..|... |.+++|+|+
T Consensus 250 ~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~-----v~~v~~s~~ 301 (321)
T 3ow8_A 250 WVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQ-----VWGVKYNGN 301 (321)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC-----EEEEEECTT
T ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCc-----EEEEEECCC
Confidence 9999999999999999999999999999999999999887654 457777774
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.84 E-value=8.4e-20 Score=191.16 Aligned_cols=180 Identities=20% Similarity=0.262 Sum_probs=144.8
Q ss_pred CCCceeccCCCCceEEEEecCCCCcc--------cccCcccCCCCcEEEeccCCCcEEEEecCCCC--------------
Q 006229 470 SRPTLQHNGASSKSLLMFGSDGMGSL--------TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDA-------------- 527 (655)
Q Consensus 470 s~~~~~~s~S~d~s~l~ws~dg~~~l--------asss~~l~~~~~~LasGS~D~tV~vW~s~d~~-------------- 527 (655)
++...+.+++.|+.+.+|+......+ .+....+.+.+.++++|+.|+.|++|+.....
T Consensus 65 ~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~ 144 (340)
T 1got_B 65 TDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG 144 (340)
T ss_dssp TTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSS
T ss_pred CCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCc
Confidence 34467888889999999987643211 12233566777899999999999999765431
Q ss_pred ---------------CCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEE
Q 006229 528 ---------------DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST 592 (655)
Q Consensus 528 ---------------d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~t 592 (655)
...+..+++|++.++ ..+..+.+|.+.|.+++|+|++++|++|+.|++|+|||++++.++.+
T Consensus 145 ~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~ 221 (340)
T 1got_B 145 YLSCCRFLDDNQIVTSSGDTTCALWDIETG---QQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT 221 (340)
T ss_dssp CEEEEEEEETTEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEE
T ss_pred cEEEEEECCCCcEEEEECCCcEEEEECCCC---cEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEE
Confidence 112445577777665 56778889999999999999999999999999999999999999999
Q ss_pred ecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 593 LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 593 l~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
+.+|...|++|+|+|++.+|++|+.|++|+|||++++..+..+..... ...|.+++|+|+
T Consensus 222 ~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~---~~~v~~~~~s~~ 281 (340)
T 1got_B 222 FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNI---ICGITSVSFSKS 281 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTC---CSCEEEEEECTT
T ss_pred EcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCc---ccceEEEEECCC
Confidence 999999999999999999999999999999999999988877754322 124667888885
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.5e-20 Score=192.00 Aligned_cols=176 Identities=18% Similarity=0.201 Sum_probs=141.7
Q ss_pred CceeccCCCCceEEEEecCCCC----------cccccCcccCCCCcEEEeccCCCcEEEEecCCCCC-------------
Q 006229 472 PTLQHNGASSKSLLMFGSDGMG----------SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDAD------------- 528 (655)
Q Consensus 472 ~~~~~s~S~d~s~l~ws~dg~~----------~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d------------- 528 (655)
...+++++.|+++.+|+..... ...+....+.+...++++++.|++|++|+..++..
T Consensus 48 ~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~ 127 (321)
T 3ow8_A 48 SETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWT 127 (321)
T ss_dssp -CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCC
T ss_pred CCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEE
Confidence 3578888999999999865421 11223334566668899999999999998765430
Q ss_pred -------------CCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecc
Q 006229 529 -------------PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE 595 (655)
Q Consensus 529 -------------~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~g 595 (655)
..+..+++|+...+ .....+..|...|.+++|+|+|++|++|+.|++|+|||+++++++.++.+
T Consensus 128 ~~~spdg~~l~~g~~dg~v~i~~~~~~---~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~ 204 (321)
T 3ow8_A 128 LAFSPDSQYLATGTHVGKVNIFGVESG---KKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEG 204 (321)
T ss_dssp EEECTTSSEEEEECTTSEEEEEETTTC---SEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred EEECCCCCEEEEEcCCCcEEEEEcCCC---ceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcc
Confidence 11233455655544 44556778889999999999999999999999999999999999999999
Q ss_pred cCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 596 H~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
|...|++|+|+|++.+|++|+.|++|+|||++++.++..+.+|... |.+++|+|+
T Consensus 205 h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~-----v~~~~~sp~ 259 (321)
T 3ow8_A 205 HAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASW-----VLNVAFCPD 259 (321)
T ss_dssp CSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSC-----EEEEEECTT
T ss_pred cCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCc-----eEEEEECCC
Confidence 9999999999999999999999999999999999999999888664 456778775
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=6e-20 Score=197.93 Aligned_cols=175 Identities=19% Similarity=0.280 Sum_probs=133.5
Q ss_pred ceeccCCCCceEEEEecCCCCc--------ccccCcccCCCCcEEEeccCCCcEEEEecCCCC-----------------
Q 006229 473 TLQHNGASSKSLLMFGSDGMGS--------LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDA----------------- 527 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~~--------lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~----------------- 527 (655)
..+.+++.|+.+.+|+..+... ..+....+.+.+.+|++|+.|++|++|+...+.
T Consensus 163 ~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~ 242 (410)
T 1vyh_C 163 KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRP 242 (410)
T ss_dssp SEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred CEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEE
Confidence 4556666667777776654211 112222445555667777777777777654432
Q ss_pred ---------CCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCC--------------------CCEEEEEeCCCc
Q 006229 528 ---------DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD--------------------GKLLATGGHDKK 578 (655)
Q Consensus 528 ---------d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpd--------------------G~lLaSgs~Dgt 578 (655)
.+.+..+++|+...+ .++..+.+|...|.|++|+|+ |.+|++|+.|++
T Consensus 243 ~~~g~~l~s~s~D~~v~vwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~ 319 (410)
T 1vyh_C 243 NQDGTLIASCSNDQTVRVWVVATK---ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT 319 (410)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSE
T ss_pred CCCCCEEEEEcCCCeEEEEECCCC---ceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCe
Confidence 112334455655544 456678899999999999996 679999999999
Q ss_pred EEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 579 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 579 VrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
|+|||++++.++.++.+|...|++|+|+|++.+|+||+.|++|+|||+++++++..+..|... |.+++|+|+
T Consensus 320 i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~-----v~~l~~~~~ 391 (410)
T 1vyh_C 320 IKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHF-----VTSLDFHKT 391 (410)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSC-----EEEEEECSS
T ss_pred EEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCc-----EEEEEEcCC
Confidence 999999999999999999999999999999999999999999999999999999999888654 557788874
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=2.6e-19 Score=192.97 Aligned_cols=161 Identities=15% Similarity=0.218 Sum_probs=136.4
Q ss_pred CCCceeccCCCCceEEEEecCCCCc--------ccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCC
Q 006229 470 SRPTLQHNGASSKSLLMFGSDGMGS--------LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGK 541 (655)
Q Consensus 470 s~~~~~~s~S~d~s~l~ws~dg~~~--------lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~ 541 (655)
++...+++++.|+.+.+|+...... -.+....+.+.+.+|++|+.|++|++|+....
T Consensus 118 p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~--------------- 182 (410)
T 1vyh_C 118 PVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF--------------- 182 (410)
T ss_dssp SSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSS---------------
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC---------------
Confidence 3456788888999999999765211 11223355667789999999999999965432
Q ss_pred CceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcE
Q 006229 542 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTV 621 (655)
Q Consensus 542 ~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtV 621 (655)
.++..+.+|...|.+|+|+|++.+|++|+.|++|++||++++.++.++.+|...|++++|+|++.+|+||+.|++|
T Consensus 183 ----~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v 258 (410)
T 1vyh_C 183 ----ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV 258 (410)
T ss_dssp ----CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred ----ceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeE
Confidence 4677888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCeEEEEEecccceeeeeceeeEEEec
Q 006229 622 RVWDTENVRKLTFICCYKCIFVSTAIGSCFFAP 654 (655)
Q Consensus 622 rVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P 654 (655)
+|||++++.++..+..|... |.+++|+|
T Consensus 259 ~vwd~~~~~~~~~~~~h~~~-----v~~~~~~~ 286 (410)
T 1vyh_C 259 RVWVVATKECKAELREHRHV-----VECISWAP 286 (410)
T ss_dssp EEEETTTCCEEEEECCCSSC-----EEEEEECC
T ss_pred EEEECCCCceeeEecCCCce-----EEEEEEcC
Confidence 99999999999999887654 44666666
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.4e-19 Score=185.99 Aligned_cols=165 Identities=24% Similarity=0.354 Sum_probs=125.8
Q ss_pred eeccCCCCceEEEEecCCCC------------cccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCC
Q 006229 474 LQHNGASSKSLLMFGSDGMG------------SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGK 541 (655)
Q Consensus 474 ~~~s~S~d~s~l~ws~dg~~------------~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~ 541 (655)
++++++.|+.+.+|+..... .-.+....+.+.+.+|++|+.|++|++|+...... .
T Consensus 26 ~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~------------~ 93 (330)
T 2hes_X 26 ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESAD------------R 93 (330)
T ss_dssp EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC------------------
T ss_pred EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcC------------c
Confidence 67788889999999876421 11122335567778999999999999996543210 0
Q ss_pred CceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC----CeEEEEecccCCCEEEEEEcCCCCEEEEEeC
Q 006229 542 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617 (655)
Q Consensus 542 ~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t----~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~ 617 (655)
......+..+.+|...|.+|+|+|+|++|++|+.|++|+|||++. .+++.++.+|...|++|+|+|++.+|+||+.
T Consensus 94 ~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~ 173 (330)
T 2hes_X 94 TFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSY 173 (330)
T ss_dssp -CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEET
T ss_pred cccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcC
Confidence 112356778899999999999999999999999999999999942 3678899999999999999999999999999
Q ss_pred CCcEEEEECCCC--eEEEEEecccceeeeeceeeEEEecC
Q 006229 618 DRTVRVWDTENV--RKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 618 DgtVrVWDl~tg--~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
|++|+|||++++ +++..+.+|...+ .++.|+|+
T Consensus 174 D~~i~iW~~~~~~~~~~~~~~~h~~~v-----~~~~~~~~ 208 (330)
T 2hes_X 174 DDTVRIWKDYDDDWECVAVLNGHEGTV-----WSSDFDKT 208 (330)
T ss_dssp TSCEEEEEEETTEEEEEEEECCCSSCE-----EEEEECCS
T ss_pred CCeEEEEECCCCCeeEEEEccCCCCcE-----EEEEecCC
Confidence 999999999876 6888888886544 45666663
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.82 E-value=4.9e-19 Score=183.94 Aligned_cols=173 Identities=16% Similarity=0.258 Sum_probs=140.0
Q ss_pred ceeccCCCCceEEEEecCCCC-------------cccccCcccCCCCcEEEeccCCCcEEEEecCCCC------------
Q 006229 473 TLQHNGASSKSLLMFGSDGMG-------------SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDA------------ 527 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~-------------~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~------------ 527 (655)
.++.+++.|+++.+|+..+.. ...+....+.+.+.++++|+.|++|++|+..++.
T Consensus 31 ~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v 110 (319)
T 3frx_A 31 NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDV 110 (319)
T ss_dssp TEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCE
T ss_pred cEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcE
Confidence 577888889999999765311 1122233556677889999999999999876543
Q ss_pred --------------CCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCC------CCEEEEEeCCCcEEEEeCCCC
Q 006229 528 --------------DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD------GKLLATGGHDKKAVLWCTESF 587 (655)
Q Consensus 528 --------------d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpd------G~lLaSgs~DgtVrIWDl~t~ 587 (655)
...+..+++|+... .++..+.+|...|.++.|+|. +.+|++|+.|++|++||++++
T Consensus 111 ~~~~~~~~~~~l~s~s~D~~i~vwd~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~ 186 (319)
T 3frx_A 111 MSVDIDKKASMIISGSRDKTIKVWTIKG----QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF 186 (319)
T ss_dssp EEEEECTTSCEEEEEETTSCEEEEETTS----CEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTT
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCC----CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcc
Confidence 12344557777653 466778899999999999984 458999999999999999999
Q ss_pred eEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 588 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 588 ~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
++...+.+|...|++|+|+|++++|+||+.|++|+|||+++++++..+..+. .|.+++|+|+
T Consensus 187 ~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------~v~~~~~sp~ 248 (319)
T 3frx_A 187 QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD------EVFSLAFSPN 248 (319)
T ss_dssp EEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCS------CEEEEEECSS
T ss_pred hhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC------cEEEEEEcCC
Confidence 9999999999999999999999999999999999999999999998887653 3567888885
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.82 E-value=3.6e-19 Score=183.47 Aligned_cols=137 Identities=17% Similarity=0.219 Sum_probs=117.5
Q ss_pred CCCceEEEEecCCCCcccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCe
Q 006229 479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKV 558 (655)
Q Consensus 479 S~d~s~l~ws~dg~~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V 558 (655)
......+.|+|++ .+|++|+.|++|++|+...+ .++..+..|...|
T Consensus 13 ~~~V~~~~fsp~~---------------~~l~s~~~dg~v~lWd~~~~-------------------~~~~~~~~~~~~v 58 (304)
T 2ynn_A 13 SDRVKGIDFHPTE---------------PWVLTTLYSGRVELWNYETQ-------------------VEVRSIQVTETPV 58 (304)
T ss_dssp CSCEEEEEECSSS---------------SEEEEEETTSEEEEEETTTT-------------------EEEEEEECCSSCE
T ss_pred CCceEEEEECCCC---------------CEEEEEcCCCcEEEEECCCC-------------------ceeEEeeccCCcE
Confidence 3445666666654 48899999999999966544 4677888999999
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eEEEEEec
Q 006229 559 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENV-RKLTFICC 637 (655)
Q Consensus 559 ~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg-~~v~~l~~ 637 (655)
.+++|++++++|++|+.|++|+|||+.+++++..+.+|.+.|++|+|+|++.+|+||+.|++|+|||++++ .+...+.+
T Consensus 59 ~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~ 138 (304)
T 2ynn_A 59 RAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG 138 (304)
T ss_dssp EEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECC
T ss_pred EEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987 45566777
Q ss_pred ccceeeeeceeeEEEec
Q 006229 638 YKCIFVSTAIGSCFFAP 654 (655)
Q Consensus 638 ~~~~v~s~~Vss~~F~P 654 (655)
|... |.+++|+|
T Consensus 139 h~~~-----v~~v~~~p 150 (304)
T 2ynn_A 139 HEHF-----VMCVAFNP 150 (304)
T ss_dssp CCSC-----EEEEEECT
T ss_pred cCCc-----EEEEEECC
Confidence 7554 45677777
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.81 E-value=5.7e-19 Score=181.94 Aligned_cols=178 Identities=18% Similarity=0.208 Sum_probs=135.1
Q ss_pred CCceeccCCCCceEEEEecCCCCcc--------cccCcccCCCCcEEEeccCCCcEEEEecCCCC---------------
Q 006229 471 RPTLQHNGASSKSLLMFGSDGMGSL--------TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDA--------------- 527 (655)
Q Consensus 471 ~~~~~~s~S~d~s~l~ws~dg~~~l--------asss~~l~~~~~~LasGS~D~tV~vW~s~d~~--------------- 527 (655)
....+.+++.++.+.+|+......+ .+....+.+.+.+|++|+.|++|++|+...+.
T Consensus 66 ~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~ 145 (304)
T 2ynn_A 66 RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMC 145 (304)
T ss_dssp GGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEE
T ss_pred CCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEE
Confidence 3356777788888888887642211 12233556667788888899999988754431
Q ss_pred -------------CCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcC--CCCEEEEEeCCCcEEEEeCCCCeEEEE
Q 006229 528 -------------DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLWCTESFTVKST 592 (655)
Q Consensus 528 -------------d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSp--dG~lLaSgs~DgtVrIWDl~t~~~l~t 592 (655)
...+..+++|++...... .....+|...|.+++|+| ++.+|++|+.|++|+|||+++++++.+
T Consensus 146 v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~ 223 (304)
T 2ynn_A 146 VAFNPKDPSTFASGCLDRTVKVWSLGQSTPN--FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT 223 (304)
T ss_dssp EEECTTCTTEEEEEETTSEEEEEETTCSSCS--EEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEE
T ss_pred EEECCCCCCEEEEEeCCCeEEEEECCCCCcc--ceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCcccee
Confidence 112334466666543221 222346778899999987 788999999999999999999999999
Q ss_pred ecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 593 LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 593 l~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
+.+|...|++++|+|++.+|+||+.|++|+|||+++++++..+..+...+ .+++|+|+
T Consensus 224 ~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~-----~~~~~~~~ 281 (304)
T 2ynn_A 224 LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERS-----WCIATHPT 281 (304)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSE-----EEEEECTT
T ss_pred eCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccE-----EEEEECCC
Confidence 99999999999999999999999999999999999999999998775543 35666663
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.81 E-value=7.1e-19 Score=187.16 Aligned_cols=186 Identities=18% Similarity=0.189 Sum_probs=143.1
Q ss_pred CCCceeccCCCCceEEEEecCCCCc--------ccccCcccCCCCcEEEeccCCCcEEEEecCCCC--------------
Q 006229 470 SRPTLQHNGASSKSLLMFGSDGMGS--------LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDA-------------- 527 (655)
Q Consensus 470 s~~~~~~s~S~d~s~l~ws~dg~~~--------lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~-------------- 527 (655)
++...+++++.|+++.+|+...... ..+....+.+.+.+|++|+.|++|++|+.....
T Consensus 76 p~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~g 155 (380)
T 3iz6_a 76 PEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTG 155 (380)
T ss_dssp TTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccC
Confidence 4456788889999999999765221 123344667788999999999999999754211
Q ss_pred --------------------CCCCccccccccCCCceeeeEE--eecCCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeC
Q 006229 528 --------------------DPRDRVGRSAEVGKGFTFTEFQ--LIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCT 584 (655)
Q Consensus 528 --------------------d~~d~~~~l~d~~~~~t~~~v~--~l~gH~~~V~sl~fSp-dG~lLaSgs~DgtVrIWDl 584 (655)
...+..+++|++.++.....+. ...+|...|.+++|++ ++.+|++|+.|++|+|||+
T Consensus 156 h~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~ 235 (380)
T 3iz6_a 156 HKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDL 235 (380)
T ss_dssp CSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEET
T ss_pred CCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEEC
Confidence 1234556778777663332221 1168999999999987 8999999999999999999
Q ss_pred C-CCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccce--eeeeceeeEEEecC
Q 006229 585 E-SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCI--FVSTAIGSCFFAPT 655 (655)
Q Consensus 585 ~-t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~--v~s~~Vss~~F~P~ 655 (655)
+ +.+++.++.+|...|++|+|+|++.+|+|||.|++|+|||++++.++..+..+... .....|.+++|+|+
T Consensus 236 ~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 309 (380)
T 3iz6_a 236 RITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSIS 309 (380)
T ss_dssp TTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSS
T ss_pred CCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCC
Confidence 8 55788899999999999999999999999999999999999999999888654322 11223678888885
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=8.1e-19 Score=184.27 Aligned_cols=164 Identities=23% Similarity=0.323 Sum_probs=133.6
Q ss_pred CCCceeccCCCCceEEEEecCCCCc-----------ccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccc
Q 006229 470 SRPTLQHNGASSKSLLMFGSDGMGS-----------LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAE 538 (655)
Q Consensus 470 s~~~~~~s~S~d~s~l~ws~dg~~~-----------lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d 538 (655)
++..++++++.|+.+.+|+.++... -.+....+.+.+.+|++|+.|++|++|+...+
T Consensus 26 p~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~------------ 93 (345)
T 3fm0_A 26 PAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQD------------ 93 (345)
T ss_dssp TTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC------------
T ss_pred CCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCC------------
Confidence 4456788888999999998865321 11223356677789999999999999965433
Q ss_pred cCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC---eEEEEecccCCCEEEEEEcCCCCEEEEE
Q 006229 539 VGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF---TVKSTLEEHTQWITDVRFSPSLSRLATS 615 (655)
Q Consensus 539 ~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~---~~l~tl~gH~~~ItsVafsPdg~~LaSg 615 (655)
...++..+.+|...|.+|+|+|++++|++|+.|++|+|||++++ .++..+.+|...|++|+|+|++.+|++|
T Consensus 94 -----~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~ 168 (345)
T 3fm0_A 94 -----DFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASA 168 (345)
T ss_dssp ------EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEE
T ss_pred -----CeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEE
Confidence 23467788999999999999999999999999999999999865 5677889999999999999999999999
Q ss_pred eCCCcEEEEECCCCe--EEEEEecccceeeeeceeeEEEecC
Q 006229 616 SADRTVRVWDTENVR--KLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 616 S~DgtVrVWDl~tg~--~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
+.|++|+|||++++. ++..+.+|... |.+++|+|+
T Consensus 169 s~d~~i~~w~~~~~~~~~~~~~~~h~~~-----v~~l~~sp~ 205 (345)
T 3fm0_A 169 SYDDTVKLYREEEDDWVCCATLEGHEST-----VWSLAFDPS 205 (345)
T ss_dssp ETTSCEEEEEEETTEEEEEEEECCCSSC-----EEEEEECTT
T ss_pred eCCCcEEEEEecCCCEEEEEEecCCCCc-----eEEEEECCC
Confidence 999999999998875 45677777554 557888875
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-18 Score=183.45 Aligned_cols=180 Identities=19% Similarity=0.232 Sum_probs=141.6
Q ss_pred CCCceeccCCCCceEEEEecCCCCc--------ccccCcccCCCCcEEEeccCCCcEEEEecCCCC--------------
Q 006229 470 SRPTLQHNGASSKSLLMFGSDGMGS--------LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDA-------------- 527 (655)
Q Consensus 470 s~~~~~~s~S~d~s~l~ws~dg~~~--------lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~-------------- 527 (655)
++...+++++.|+++.+|+...... ..+....+.+.+.++++|+.|+.|++|......
T Consensus 74 ~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h 153 (354)
T 2pbi_B 74 KDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMH 153 (354)
T ss_dssp TTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEEC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeecc
Confidence 3446788888999999998654211 112233566777889999999999998553221
Q ss_pred ------------------CCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcC--CCCEEEEEeCCCcEEEEeCCCC
Q 006229 528 ------------------DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLWCTESF 587 (655)
Q Consensus 528 ------------------d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSp--dG~lLaSgs~DgtVrIWDl~t~ 587 (655)
...+..+++|++.++ ..+..+.+|...|.+++|+| +|++|++|+.|++|++||++++
T Consensus 154 ~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~ 230 (354)
T 2pbi_B 154 TNYLSACSFTNSDMQILTASGDGTCALWDVESG---QLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG 230 (354)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTC
T ss_pred CCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC---eEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCC
Confidence 123455677877665 56778889999999999988 5789999999999999999999
Q ss_pred eEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 588 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 588 ~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
+++.++.+|...|++|+|+|++.+|+||+.|++|+|||++++.++..+..+.. ...+.+++|+|+
T Consensus 231 ~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~---~~~~~~~~~s~~ 295 (354)
T 2pbi_B 231 QCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESI---IFGASSVDFSLS 295 (354)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTC---CSCEEEEEECTT
T ss_pred cEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCc---ccceeEEEEeCC
Confidence 99999999999999999999999999999999999999999988877754432 223567788774
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.5e-18 Score=180.56 Aligned_cols=105 Identities=20% Similarity=0.250 Sum_probs=93.6
Q ss_pred eeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccc--CCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 006229 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH--TQWITDVRFSPSLSRLATSSADRTVRV 623 (655)
Q Consensus 546 ~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH--~~~ItsVafsPdg~~LaSgS~DgtVrV 623 (655)
.++..+.+|...|.+++|+|++.+|++|+.|++|+|||+++.+.+..+..+ ...|++++|+|++.+|++|+.|++|+|
T Consensus 231 ~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~v 310 (354)
T 2pbi_B 231 QCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINV 310 (354)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred cEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEE
Confidence 467778899999999999999999999999999999999999888777644 457999999999999999999999999
Q ss_pred EECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 624 WDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 624 WDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
||+.+++++..+.+|... |.+++|+|+
T Consensus 311 wd~~~~~~~~~l~~h~~~-----v~~l~~spd 337 (354)
T 2pbi_B 311 WDVLKGSRVSILFGHENR-----VSTLRVSPD 337 (354)
T ss_dssp EETTTCSEEEEECCCSSC-----EEEEEECTT
T ss_pred EECCCCceEEEEECCCCc-----EEEEEECCC
Confidence 999999999998887654 557888885
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.8e-18 Score=183.18 Aligned_cols=159 Identities=14% Similarity=0.146 Sum_probs=128.7
Q ss_pred ceeccCCCCceEEEEecCCCCcc------------cccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccC
Q 006229 473 TLQHNGASSKSLLMFGSDGMGSL------------TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVG 540 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~~l------------asss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~ 540 (655)
..+.+++.++.+.+|+.+....+ .+....+.+.+++|++|+.|++|++|+...+
T Consensus 94 ~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~-------------- 159 (344)
T 4gqb_B 94 RGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ-------------- 159 (344)
T ss_dssp TEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT--------------
T ss_pred CeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC--------------
Confidence 34667888999999998653211 1233456777889999999999999976544
Q ss_pred CCceeeeEEeecCCCCCeeEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeEEEEec--ccCCCEEEEEEcCC-CCEEEEEe
Q 006229 541 KGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSPS-LSRLATSS 616 (655)
Q Consensus 541 ~~~t~~~v~~l~gH~~~V~sl~fSpdG~-lLaSgs~DgtVrIWDl~t~~~l~tl~--gH~~~ItsVafsPd-g~~LaSgS 616 (655)
+++..+.+|.+.|++++|++++. +|++|+.|++|+|||+++++++..+. .|...|++++|+|+ +.+|++|+
T Consensus 160 -----~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~ 234 (344)
T 4gqb_B 160 -----VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGD 234 (344)
T ss_dssp -----EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEE
T ss_pred -----cEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEec
Confidence 57788999999999999999875 89999999999999999999888874 56678999999995 57899999
Q ss_pred CCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 617 ADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 617 ~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
.|++|+|||+++++++.++.+|... |.+++|+|+
T Consensus 235 ~dg~v~~wd~~~~~~~~~~~~h~~~-----v~~v~fsp~ 268 (344)
T 4gqb_B 235 ENGTVSLVDTKSTSCVLSSAVHSQC-----VTGLVFSPH 268 (344)
T ss_dssp TTSEEEEEESCC--CCEEEECCSSC-----EEEEEECSS
T ss_pred cCCcEEEEECCCCcEEEEEcCCCCC-----EEEEEEccC
Confidence 9999999999999999999988764 457788874
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.9e-18 Score=178.05 Aligned_cols=122 Identities=17% Similarity=0.222 Sum_probs=106.7
Q ss_pred cEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 006229 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (655)
Q Consensus 507 ~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t 586 (655)
.+|++|+.|++|++|+.... ......++..+.+|...|.+|+|+|+|++|++|+.|++|+|||+.+
T Consensus 31 ~~l~s~s~D~~v~~W~~~~~--------------~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~ 96 (319)
T 3frx_A 31 NLLLSASRDKTLISWKLTGD--------------DQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVAT 96 (319)
T ss_dssp TEEEEEETTSEEEEEEEEEE--------------TTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred cEEEEecCCccEEEecCCCC--------------CccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 68999999999999965322 1112346778899999999999999999999999999999999999
Q ss_pred CeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceee
Q 006229 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFV 643 (655)
Q Consensus 587 ~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~ 643 (655)
++++..+.+|...|++|+|+|++.+|+||+.|++|+|||++ +.++..+.+|...+.
T Consensus 97 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~ 152 (319)
T 3frx_A 97 GETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVS 152 (319)
T ss_dssp TEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEE
T ss_pred CCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEE
Confidence 99999999999999999999999999999999999999997 567778877765443
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.8e-18 Score=183.28 Aligned_cols=161 Identities=17% Similarity=0.125 Sum_probs=122.2
Q ss_pred CCCceeccCCCCceEEEEecCCCCcc--------cccCcccCCCC-cEEEeccCCCcEEEEecCCCCCCCCccccccccC
Q 006229 470 SRPTLQHNGASSKSLLMFGSDGMGSL--------TSAPNQLTDMD-RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVG 540 (655)
Q Consensus 470 s~~~~~~s~S~d~s~l~ws~dg~~~l--------asss~~l~~~~-~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~ 540 (655)
++...+++++.++.+.+|+......+ .+....+...+ .++++|+.|++|++|+...+.
T Consensus 137 pdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~------------- 203 (344)
T 4gqb_B 137 SSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK------------- 203 (344)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSS-------------
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccc-------------
Confidence 44567888899999999998753211 11222344433 578999999999999765541
Q ss_pred CCceeeeEEee--cCCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCC-CEEEEEe
Q 006229 541 KGFTFTEFQLI--PASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL-SRLATSS 616 (655)
Q Consensus 541 ~~~t~~~v~~l--~gH~~~V~sl~fSp-dG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg-~~LaSgS 616 (655)
++..+ ..|...|++++|+| ++++|++|+.|++|+|||+++++++.++.+|...|++|+|+|++ .+|+|||
T Consensus 204 ------~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs 277 (344)
T 4gqb_B 204 ------PASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLS 277 (344)
T ss_dssp ------CEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEE
T ss_pred ------eeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEe
Confidence 22222 34566799999999 56799999999999999999999999999999999999999998 5799999
Q ss_pred CCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 617 ADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 617 ~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
.|++|+|||+++++++. +.+|.. .|.+++|+|+
T Consensus 278 ~D~~i~vwd~~~~~~~~-~~~H~~-----~V~~v~~sp~ 310 (344)
T 4gqb_B 278 EDCSLAVLDSSLSELFR-SQAHRD-----FVRDATWSPL 310 (344)
T ss_dssp TTSCEEEECTTCCEEEE-ECCCSS-----CEEEEEECSS
T ss_pred CCCeEEEEECCCCcEEE-EcCCCC-----CEEEEEEeCC
Confidence 99999999999988664 556654 3567888885
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.79 E-value=4e-18 Score=178.37 Aligned_cols=158 Identities=16% Similarity=0.141 Sum_probs=130.3
Q ss_pred eeccCCCCceEEEEecCCCCc--------ccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCcee
Q 006229 474 LQHNGASSKSLLMFGSDGMGS--------LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTF 545 (655)
Q Consensus 474 ~~~s~S~d~s~l~ws~dg~~~--------lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~ 545 (655)
.+.+++.++.+.+|+...... -.+....+.+.+.++++|+.|++|++|+...+
T Consensus 156 ~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~------------------- 216 (340)
T 1got_B 156 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG------------------- 216 (340)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-------------------
T ss_pred cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCC-------------------
Confidence 356677889999998765211 11223355667789999999999999976544
Q ss_pred eeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec--ccCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 006229 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRV 623 (655)
Q Consensus 546 ~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~--gH~~~ItsVafsPdg~~LaSgS~DgtVrV 623 (655)
.++..+.+|...|.+++|+|++++|++|+.|++|+|||+++++.+..+. .+...|++|+|+|++.+|++|+.|++|+|
T Consensus 217 ~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~v 296 (340)
T 1got_B 217 MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNV 296 (340)
T ss_dssp SEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred eeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEE
Confidence 4567788999999999999999999999999999999999998887775 33457999999999999999999999999
Q ss_pred EECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 624 WDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 624 WDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
||+.++.++..+.+|... |.+++|+|+
T Consensus 297 wd~~~~~~~~~~~~h~~~-----v~~~~~s~d 323 (340)
T 1got_B 297 WDALKADRAGVLAGHDNR-----VSCLGVTDD 323 (340)
T ss_dssp EETTTCCEEEEEECCSSC-----EEEEEECTT
T ss_pred EEcccCcEeeEeecCCCc-----EEEEEEcCC
Confidence 999999999999888765 456777775
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.79 E-value=4.5e-18 Score=174.19 Aligned_cols=163 Identities=18% Similarity=0.281 Sum_probs=133.9
Q ss_pred CCCceeccCCCCceEEEEecCCCCc--------ccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCC
Q 006229 470 SRPTLQHNGASSKSLLMFGSDGMGS--------LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGK 541 (655)
Q Consensus 470 s~~~~~~s~S~d~s~l~ws~dg~~~--------lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~ 541 (655)
++...+.+++.++.+.+|+...... ..+....+.+.+.+|++|+.|++|++|+...+
T Consensus 33 ~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~--------------- 97 (312)
T 4ery_A 33 PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG--------------- 97 (312)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---------------
T ss_pred CCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCC---------------
Confidence 4456778888889999998754211 12223355667789999999999999966543
Q ss_pred CceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcE
Q 006229 542 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTV 621 (655)
Q Consensus 542 ~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtV 621 (655)
.++..+.+|...|.+++|+|++++|++|+.|++|+|||+++++++..+.+|...|++++|+|++.+|++++.|++|
T Consensus 98 ----~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 173 (312)
T 4ery_A 98 ----KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 173 (312)
T ss_dssp ----CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred ----cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcE
Confidence 4567788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 622 RVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 622 rVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
+|||+++++++..+..... ..+..++|+|+
T Consensus 174 ~~wd~~~~~~~~~~~~~~~----~~~~~~~~~~~ 203 (312)
T 4ery_A 174 RIWDTASGQCLKTLIDDDN----PPVSFVKFSPN 203 (312)
T ss_dssp EEEETTTCCEEEEECCSSC----CCEEEEEECTT
T ss_pred EEEECCCCceeeEEeccCC----CceEEEEECCC
Confidence 9999999998877754332 23456777774
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.6e-18 Score=182.76 Aligned_cols=131 Identities=18% Similarity=0.170 Sum_probs=103.6
Q ss_pred CcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 006229 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (655)
Q Consensus 506 ~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~ 585 (655)
..++++|+.|++|++|+.... ...+..+.+|.+.|.+|+|+|++++|++|+.|++|+|||++
T Consensus 218 ~~~l~sgs~D~~v~~wd~~~~------------------~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~ 279 (380)
T 3iz6_a 218 ANMFISGSCDTTVRLWDLRIT------------------SRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMR 279 (380)
T ss_dssp CCEEEEEETTSCEEEEETTTT------------------CCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETT
T ss_pred CCEEEEEECCCeEEEEECCCC------------------CcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECC
Confidence 355666666666666644321 13566788999999999999999999999999999999999
Q ss_pred CCeEEEEecccCC-------CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 586 SFTVKSTLEEHTQ-------WITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 586 t~~~l~tl~gH~~-------~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
+++++..+..|.. .|++|+|+|+|++|++|+.||.|+|||+.+++++..+..... .+...|.+++|+|+
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~-~h~~~v~~l~~s~d 355 (380)
T 3iz6_a 280 TGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQN-SHEGRISCLGLSSD 355 (380)
T ss_dssp TTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCS-SCCCCCCEEEECSS
T ss_pred CCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccC-CCCCceEEEEECCC
Confidence 9999988876543 489999999999999999999999999999998887732111 12334678888885
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.79 E-value=5.7e-18 Score=173.44 Aligned_cols=126 Identities=20% Similarity=0.325 Sum_probs=112.5
Q ss_pred CcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 006229 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (655)
Q Consensus 506 ~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~ 585 (655)
+.+|++|+.|+.|++|+..++ +.+..+.+|...|.+++|+|++++|++|+.|++|+|||++
T Consensus 35 ~~~l~s~~~dg~i~iw~~~~~-------------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~ 95 (312)
T 4ery_A 35 GEWLASSSADKLIKIWGAYDG-------------------KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS 95 (312)
T ss_dssp SSEEEEEETTSCEEEEETTTC-------------------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred CCEEEEeeCCCeEEEEeCCCc-------------------ccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECC
Confidence 358899999999999965443 3556778999999999999999999999999999999999
Q ss_pred CCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 586 t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
+++++.++.+|...|++++|+|++.+|++|+.|++|+|||+++++++..+..|... |.++.|+|+
T Consensus 96 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-----v~~~~~~~~ 160 (312)
T 4ery_A 96 SGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP-----VSAVHFNRD 160 (312)
T ss_dssp TCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC-----EEEEEECTT
T ss_pred CCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCc-----EEEEEEcCC
Confidence 99999999999999999999999999999999999999999999999998877654 446677664
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=3e-18 Score=183.18 Aligned_cols=177 Identities=18% Similarity=0.224 Sum_probs=135.6
Q ss_pred CCCCceeccCCCCceEEEEecCCCCcc--------cccCcccCCCCcEEEeccCCCcEEEEecCCCC-------------
Q 006229 469 ISRPTLQHNGASSKSLLMFGSDGMGSL--------TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDA------------- 527 (655)
Q Consensus 469 ~s~~~~~~s~S~d~s~l~ws~dg~~~l--------asss~~l~~~~~~LasGS~D~tV~vW~s~d~~------------- 527 (655)
.++...+++++.++.+.+|+......+ .+....+.+.+.+|++|+.|++|++|+..++.
T Consensus 132 s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~ 211 (393)
T 1erj_A 132 SPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTT 211 (393)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEE
T ss_pred CCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEE
Confidence 345567888888999999998753211 12233556677889999999999999765532
Q ss_pred -------------CCCCccccccccCCCceeeeE----EeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC----
Q 006229 528 -------------DPRDRVGRSAEVGKGFTFTEF----QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES---- 586 (655)
Q Consensus 528 -------------d~~d~~~~l~d~~~~~t~~~v----~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t---- 586 (655)
...+..+++|+...+.....+ ....+|...|.+|+|+|+|++|++|+.|++|+|||+++
T Consensus 212 ~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~ 291 (393)
T 1erj_A 212 VAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNK 291 (393)
T ss_dssp EEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------
T ss_pred EEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCc
Confidence 112445577777665333222 12268999999999999999999999999999999975
Q ss_pred --------CeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeee
Q 006229 587 --------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVST 645 (655)
Q Consensus 587 --------~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~ 645 (655)
+.+..++.+|...|++|+|+|++.+|+||+.|++|+|||+++++++..+.+|...+.++
T Consensus 292 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v 358 (393)
T 1erj_A 292 SDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISV 358 (393)
T ss_dssp ---------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred ccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEE
Confidence 34667888999999999999999999999999999999999999999999887765543
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.78 E-value=4.9e-18 Score=180.60 Aligned_cols=152 Identities=13% Similarity=0.127 Sum_probs=112.1
Q ss_pred ccCCCCceEEEEecCCCCc-------ccccCcccCCCCcEEEeccCCCcEEEEecCCCCCC-------------------
Q 006229 476 HNGASSKSLLMFGSDGMGS-------LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADP------------------- 529 (655)
Q Consensus 476 ~s~S~d~s~l~ws~dg~~~-------lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~------------------- 529 (655)
.+++.|+++.+|++..... -.+....+.+.+.++++++.| .+++|+..++...
T Consensus 151 as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fsp 229 (365)
T 4h5i_A 151 ASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIA 229 (365)
T ss_dssp EESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEE
T ss_pred EECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcC
Confidence 3556788899998875221 112334567777889888755 4555544433200
Q ss_pred -------------CCccccccccCCCce-eeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe-c
Q 006229 530 -------------RDRVGRSAEVGKGFT-FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-E 594 (655)
Q Consensus 530 -------------~d~~~~l~d~~~~~t-~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl-~ 594 (655)
....+..|+...... ......+.+|...|+||+|+|||++||+|+.|++|+|||+++++++.++ .
T Consensus 230 dg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~ 309 (365)
T 4h5i_A 230 DDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQ 309 (365)
T ss_dssp TTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETT
T ss_pred CCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecC
Confidence 001123333333221 2234567889999999999999999999999999999999999999885 7
Q ss_pred ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 006229 595 EHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (655)
Q Consensus 595 gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~t 628 (655)
+|...|++|+|+|||++|||||.|++|||||+..
T Consensus 310 gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 310 AHSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp SSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred cccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 9999999999999999999999999999999953
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.6e-18 Score=177.40 Aligned_cols=144 Identities=17% Similarity=0.274 Sum_probs=117.0
Q ss_pred CCceeccCCCCceEEEEecCCCC---------------cccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCcccc
Q 006229 471 RPTLQHNGASSKSLLMFGSDGMG---------------SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGR 535 (655)
Q Consensus 471 ~~~~~~s~S~d~s~l~ws~dg~~---------------~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~ 535 (655)
....+.+++.|+.+.+|+..... .-.+....+.+.+.+|++|+.|++|++|+....
T Consensus 69 ~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~--------- 139 (330)
T 2hes_X 69 HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDES--------- 139 (330)
T ss_dssp TSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTT---------
T ss_pred CCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCC---------
Confidence 44678888899999999874210 111223356677889999999999999976432
Q ss_pred ccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC--eEEEEecccCCCEEEEEEcCC--CCE
Q 006229 536 SAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF--TVKSTLEEHTQWITDVRFSPS--LSR 611 (655)
Q Consensus 536 l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~--~~l~tl~gH~~~ItsVafsPd--g~~ 611 (655)
+....++..+.+|...|.+|+|+|++.+|++|+.|++|+|||+.++ +++.++.+|...|++++|+|+ +.+
T Consensus 140 ------~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 213 (330)
T 2hes_X 140 ------GEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFR 213 (330)
T ss_dssp ------CCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCE
T ss_pred ------CCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeE
Confidence 1123567788899999999999999999999999999999999776 688899999999999999998 779
Q ss_pred EEEEeCCCcEEEEECCCC
Q 006229 612 LATSSADRTVRVWDTENV 629 (655)
Q Consensus 612 LaSgS~DgtVrVWDl~tg 629 (655)
|+||+.|++|+|||++++
T Consensus 214 l~s~s~D~~v~iw~~~~~ 231 (330)
T 2hes_X 214 LCSGSDDSTVRVWKYMGD 231 (330)
T ss_dssp EEEEETTSCEEEEEEEEE
T ss_pred EEEEeCCCeEEEEEecCC
Confidence 999999999999999754
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.5e-18 Score=196.10 Aligned_cols=177 Identities=21% Similarity=0.271 Sum_probs=133.5
Q ss_pred ceeccCCCCceEEEEecCCCCc-------------ccccCcccCCCCcEEEeccCCCcEEEEecCCCC------------
Q 006229 473 TLQHNGASSKSLLMFGSDGMGS-------------LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDA------------ 527 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~~-------------lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~------------ 527 (655)
.++.+++.|+++.+|+...... ..+....+.+.+++|++|+.|++|++|+...+.
T Consensus 396 ~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v 475 (694)
T 3dm0_A 396 DIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDV 475 (694)
T ss_dssp SEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCE
T ss_pred CEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCE
Confidence 4677778888888887653211 112233456666788888888888888765442
Q ss_pred --------------CCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCC--CEEEEEeCCCcEEEEeCCCCeEEE
Q 006229 528 --------------DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDG--KLLATGGHDKKAVLWCTESFTVKS 591 (655)
Q Consensus 528 --------------d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG--~lLaSgs~DgtVrIWDl~t~~~l~ 591 (655)
.+.+..+++|+..............+|...|.|++|+|++ .+|++|+.|++|+|||+++++++.
T Consensus 476 ~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~ 555 (694)
T 3dm0_A 476 LSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRS 555 (694)
T ss_dssp EEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEE
T ss_pred EEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEE
Confidence 1234445666654432222222335799999999999987 589999999999999999999999
Q ss_pred EecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 592 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 592 tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
++.+|...|++|+|+|++++|+||+.|++|+|||+++++++..+..+. .+.+++|+|+
T Consensus 556 ~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~------~v~~~~~sp~ 613 (694)
T 3dm0_A 556 TLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANS------VIHALCFSPN 613 (694)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSS------CEEEEEECSS
T ss_pred EEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCC------cEEEEEEcCC
Confidence 999999999999999999999999999999999999999887765543 3567888875
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-17 Score=189.24 Aligned_cols=180 Identities=17% Similarity=0.222 Sum_probs=134.7
Q ss_pred CCCceeccCCCCceEEEEecCCCC--------cccccCcccCCCCcEEEeccCCCcEEEEecCCCCCC------------
Q 006229 470 SRPTLQHNGASSKSLLMFGSDGMG--------SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADP------------ 529 (655)
Q Consensus 470 s~~~~~~s~S~d~s~l~ws~dg~~--------~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~------------ 529 (655)
++...++.++ +..+.+|+..... .-.+....+.+.+++|++|+.|++|++|+...+...
T Consensus 28 pdg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v 106 (611)
T 1nr0_A 28 PAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPV 106 (611)
T ss_dssp TTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCE
T ss_pred CCCCEEEeCC-CCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCce
Confidence 3344555544 4588889875311 112334467788899999999999999987533210
Q ss_pred ---------C-----------CccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCC-EEEEEeCCCcEEEEeCCCCe
Q 006229 530 ---------R-----------DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFT 588 (655)
Q Consensus 530 ---------~-----------d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~-lLaSgs~DgtVrIWDl~t~~ 588 (655)
. ...+.+|+.. ..+..+.+|...|.+|+|+|++. +|++|+.|++|+|||..+++
T Consensus 107 ~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~-----~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~ 181 (611)
T 1nr0_A 107 KDISWDSESKRIAAVGEGRERFGHVFLFDTG-----TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK 181 (611)
T ss_dssp EEEEECTTSCEEEEEECCSSCSEEEEETTTC-----CBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE
T ss_pred EEEEECCCCCEEEEEECCCCceeEEEEeeCC-----CCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCe
Confidence 0 0122334321 23456789999999999999987 69999999999999999999
Q ss_pred EEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecc--cceeeeeceeeEEEecC
Q 006229 589 VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCY--KCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 589 ~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~--~~~v~s~~Vss~~F~P~ 655 (655)
++.++.+|...|++|+|+|++++|+||+.|++|+|||+.+++++..+... ....+...|.+++|+|+
T Consensus 182 ~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spd 250 (611)
T 1nr0_A 182 FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPD 250 (611)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTT
T ss_pred EeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCC
Confidence 99999999999999999999999999999999999999999998887420 00012335678889885
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.77 E-value=2.2e-17 Score=172.69 Aligned_cols=136 Identities=16% Similarity=0.202 Sum_probs=108.4
Q ss_pred CCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 006229 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (655)
Q Consensus 505 ~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl 584 (655)
.+.+|++|+.|++|++|+...... ..........+.+|...|.+|+|+|++.+|++|+.|++|+|||+
T Consensus 38 d~~~l~sgs~D~~v~iWd~~~~~~------------~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~ 105 (343)
T 2xzm_R 38 DSPVLISGSRDKTVMIWKLYEEEQ------------NGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDL 105 (343)
T ss_dssp CCCEEEEEETTSCEEEEEECSSCC------------SSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEET
T ss_pred CCCEEEEEcCCCEEEEEECCcCCc------------ccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEEC
Confidence 447899999999999997654311 11123456778999999999999999999999999999999999
Q ss_pred CCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 585 ~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
++++++.++.+|...|++|+|+|++++|++|+.|++|+|||+.. .+...+.. ...+...|.++.|+|+
T Consensus 106 ~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~--~~~~~~~v~~~~~~~~ 173 (343)
T 2xzm_R 106 RTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG-ECKFSSAE--KENHSDWVSCVRYSPI 173 (343)
T ss_dssp TSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS-CEEEECCT--TTSCSSCEEEEEECCC
T ss_pred CCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC-Cceeeeec--ccCCCceeeeeeeccc
Confidence 99999999999999999999999999999999999999999984 33333321 0112233556667663
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.6e-18 Score=181.40 Aligned_cols=179 Identities=20% Similarity=0.181 Sum_probs=125.4
Q ss_pred CCceeccCCCCceEEEEecCCCC--c--------ccccCcccCCCCcEEEeccCCCcEEEEecCCCC-------------
Q 006229 471 RPTLQHNGASSKSLLMFGSDGMG--S--------LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDA------------- 527 (655)
Q Consensus 471 ~~~~~~s~S~d~s~l~ws~dg~~--~--------lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~------------- 527 (655)
+...+++++.++.+.+|+..... . -.+....+.+.+.+|++|+.|++|++|+...+.
T Consensus 22 ~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~ 101 (377)
T 3dwl_C 22 QRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNR 101 (377)
T ss_dssp SSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSS
T ss_pred CCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCC
Confidence 33456666667777777766431 1 011222445556778888888888888655432
Q ss_pred ----------------CCCCccccccccCCCceeeeEEeecC-CCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCC-----
Q 006229 528 ----------------DPRDRVGRSAEVGKGFTFTEFQLIPA-STSKVESCHFSPDGKLLATGGHDKKAVLWCTE----- 585 (655)
Q Consensus 528 ----------------d~~d~~~~l~d~~~~~t~~~v~~l~g-H~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~----- 585 (655)
...+..+++|+......+..+..+.+ |...|.+++|+|++++|++|+.|++|+|||++
T Consensus 102 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 181 (377)
T 3dwl_C 102 AATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVD 181 (377)
T ss_dssp CEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC
T ss_pred ceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccC
Confidence 01133345666655543345667777 99999999999999999999999999999985
Q ss_pred -------------CCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE----EEEEecccceeeeecee
Q 006229 586 -------------SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRK----LTFICCYKCIFVSTAIG 648 (655)
Q Consensus 586 -------------t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~----v~~l~~~~~~v~s~~Vs 648 (655)
.++++..+ +|...|++++|+|++++|++++.|++|+|||++++++ +..+..|... |.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-----v~ 255 (377)
T 3dwl_C 182 AKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLP-----LR 255 (377)
T ss_dssp -CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSC-----EE
T ss_pred CCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCc-----eE
Confidence 46677788 9999999999999999999999999999999999887 6777776554 45
Q ss_pred eEEEecC
Q 006229 649 SCFFAPT 655 (655)
Q Consensus 649 s~~F~P~ 655 (655)
+++|+|+
T Consensus 256 ~~~~s~~ 262 (377)
T 3dwl_C 256 SLLWANE 262 (377)
T ss_dssp EEEEEET
T ss_pred EEEEcCC
Confidence 6777774
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-17 Score=171.48 Aligned_cols=164 Identities=15% Similarity=0.235 Sum_probs=126.4
Q ss_pred CCCceeccCCCCceEEEEecCCCC-cc---------cccCcccCC--CCcEEEeccCCCcEEEEecCCCCCCCCcccccc
Q 006229 470 SRPTLQHNGASSKSLLMFGSDGMG-SL---------TSAPNQLTD--MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSA 537 (655)
Q Consensus 470 s~~~~~~s~S~d~s~l~ws~dg~~-~l---------asss~~l~~--~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~ 537 (655)
++...+++++.|+.+.+|+.++.. .. .+....+.. .+.+|++|+.|++|++|+...+.
T Consensus 19 ~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~---------- 88 (297)
T 2pm7_B 19 YYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGR---------- 88 (297)
T ss_dssp TTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSC----------
T ss_pred CCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCc----------
Confidence 445688889999999999986421 11 111123322 25789999999999999765431
Q ss_pred ccCCCceeeeEEeecCCCCCeeEEEEcCC--CCEEEEEeCCCcEEEEeCCCCe--EEEEecccCCCEEEEEEcCC-----
Q 006229 538 EVGKGFTFTEFQLIPASTSKVESCHFSPD--GKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPS----- 608 (655)
Q Consensus 538 d~~~~~t~~~v~~l~gH~~~V~sl~fSpd--G~lLaSgs~DgtVrIWDl~t~~--~l~tl~gH~~~ItsVafsPd----- 608 (655)
...+..+.+|...|.+|+|+|+ |.+|++|+.|++|+|||+++.. ....+.+|...|++++|+|+
T Consensus 89 -------~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~ 161 (297)
T 2pm7_B 89 -------WSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (297)
T ss_dssp -------BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----
T ss_pred -------eEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccc
Confidence 1234556789999999999997 8999999999999999998763 24577899999999999997
Q ss_pred --------CCEEEEEeCCCcEEEEECCCCe----EEEEEecccceeeeeceeeEEEecC
Q 006229 609 --------LSRLATSSADRTVRVWDTENVR----KLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 609 --------g~~LaSgS~DgtVrVWDl~tg~----~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
+++|+||+.|++|+|||++++. ++..+.+|... |.+++|+|+
T Consensus 162 ~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~-----V~~v~~sp~ 215 (297)
T 2pm7_B 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW-----VRDVAWSPT 215 (297)
T ss_dssp --------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC-----EEEEEECCC
T ss_pred ccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCc-----eEEEEECCC
Confidence 5799999999999999998765 56677777654 557788874
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.76 E-value=8.3e-18 Score=178.26 Aligned_cols=149 Identities=15% Similarity=0.159 Sum_probs=125.6
Q ss_pred CCceeccCCCCceEEEEecCCCCc-------ccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCc
Q 006229 471 RPTLQHNGASSKSLLMFGSDGMGS-------LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGF 543 (655)
Q Consensus 471 ~~~~~~s~S~d~s~l~ws~dg~~~-------lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~ 543 (655)
+...+.+++.++.+.+|+...... -......+...+++|++|+.|+.|++|+...+
T Consensus 67 ~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----------------- 129 (420)
T 3vl1_A 67 VGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFN----------------- 129 (420)
T ss_dssp EETTEEEEEETTEEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTSC-----------------
T ss_pred cCCeEEEEEcCCcEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCCCc-----------------
Confidence 345677777889999999875211 11112234566788999999999999954332
Q ss_pred eeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 006229 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623 (655)
Q Consensus 544 t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrV 623 (655)
..+..+.+|...|++++|+|++++|++|+.|++|+|||+++++++.++.+|...|++|+|+|++.+|++++.|++|+|
T Consensus 130 --~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~i 207 (420)
T 3vl1_A 130 --LQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRL 207 (420)
T ss_dssp --EEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred --ceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEE
Confidence 456667899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCeEEEEEecc
Q 006229 624 WDTENVRKLTFICCY 638 (655)
Q Consensus 624 WDl~tg~~v~~l~~~ 638 (655)
||+++++++..+..+
T Consensus 208 wd~~~~~~~~~~~~~ 222 (420)
T 3vl1_A 208 WECGTGTTIHTFNRK 222 (420)
T ss_dssp EETTTTEEEEEECBT
T ss_pred eECCCCceeEEeecC
Confidence 999999999998764
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.5e-17 Score=184.11 Aligned_cols=159 Identities=23% Similarity=0.345 Sum_probs=129.7
Q ss_pred CCCceeccCCCCceEEEEecCCCCc-------ccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCC
Q 006229 470 SRPTLQHNGASSKSLLMFGSDGMGS-------LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKG 542 (655)
Q Consensus 470 s~~~~~~s~S~d~s~l~ws~dg~~~-------lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~ 542 (655)
++...+.+++.++.+.+|+..+... -.+....+.+.+.+|++++.|++|++|+.. +
T Consensus 395 ~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~-~---------------- 457 (577)
T 2ymu_A 395 PDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN-G---------------- 457 (577)
T ss_dssp TTSSCEEEEETTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-S----------------
T ss_pred CCCCEEEEEeCCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC-C----------------
Confidence 3445667777888888888765311 112223556677889999999999999531 1
Q ss_pred ceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 006229 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622 (655)
Q Consensus 543 ~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVr 622 (655)
+.+..+.+|...|.+++|+||+++|++++.|++|+|||. +++++.++.+|...|++|+|+|++++|||++.|++|+
T Consensus 458 ---~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~ 533 (577)
T 2ymu_A 458 ---QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK 533 (577)
T ss_dssp ---CEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEE
T ss_pred ---CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEE
Confidence 356678899999999999999999999999999999995 6789999999999999999999999999999999999
Q ss_pred EEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 623 VWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 623 VWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
|||+ +++++..+.+|... |.+++|+||
T Consensus 534 lwd~-~~~~~~~~~~h~~~-----v~~~~fs~d 560 (577)
T 2ymu_A 534 LWNR-NGQLLQTLTGHSSS-----VWGVAFSPD 560 (577)
T ss_dssp EECT-TSCEEEEEECCSSC-----EEEEEECTT
T ss_pred EEeC-CCCEEEEEcCCCCC-----EEEEEEcCC
Confidence 9996 68899999888654 457888885
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.76 E-value=2.9e-17 Score=171.83 Aligned_cols=159 Identities=19% Similarity=0.330 Sum_probs=126.7
Q ss_pred CCceeccCCCCceEEEEecCCCC---------------cccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCcccc
Q 006229 471 RPTLQHNGASSKSLLMFGSDGMG---------------SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGR 535 (655)
Q Consensus 471 ~~~~~~s~S~d~s~l~ws~dg~~---------------~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~ 535 (655)
+..++++++.|+++.+|+..... ...+....+.+.+.++++|+.|++|++|+..++
T Consensus 38 d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~--------- 108 (343)
T 2xzm_R 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTG--------- 108 (343)
T ss_dssp CCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSS---------
T ss_pred CCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC---------
Confidence 34678899999999999875321 011223345666789999999999999976544
Q ss_pred ccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec---ccCCCEEEEEEcCCC---
Q 006229 536 SAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE---EHTQWITDVRFSPSL--- 609 (655)
Q Consensus 536 l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~---gH~~~ItsVafsPdg--- 609 (655)
..+..+.+|...|.+|+|+|++++|++|+.|++|+|||+... +...+. +|...|++++|+|++
T Consensus 109 ----------~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~ 177 (343)
T 2xzm_R 109 ----------TTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVRYSPIMKSA 177 (343)
T ss_dssp ----------CEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEEECCCCCSC
T ss_pred ----------cEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeeeeeccccccc
Confidence 456778899999999999999999999999999999999843 443443 799999999999987
Q ss_pred -------CEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 610 -------SRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 610 -------~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
.+|++++.|++|+|||. +..+...+..|... |.+++|+|+
T Consensus 178 ~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~-----v~~~~~s~~ 224 (343)
T 2xzm_R 178 NKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESN-----VNHLSISPN 224 (343)
T ss_dssp SCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSC-----EEEEEECTT
T ss_pred cccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCcccc-----ceEEEECCC
Confidence 79999999999999994 56777778777654 557788875
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.1e-17 Score=173.47 Aligned_cols=128 Identities=21% Similarity=0.337 Sum_probs=104.9
Q ss_pred cEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 006229 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (655)
Q Consensus 507 ~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t 586 (655)
.+|++|+.|++|++|+...+. .........+|...|.+|+|+|+|++|++|+.|++|+|||+.+
T Consensus 29 ~~las~~~D~~i~iw~~~~~~----------------~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~ 92 (345)
T 3fm0_A 29 TLLASCGGDRRIRIWGTEGDS----------------WICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQ 92 (345)
T ss_dssp SCEEEEETTSCEEEEEEETTE----------------EEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECC
T ss_pred CEEEEEcCCCeEEEEEcCCCc----------------ceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccC
Confidence 488999999999999654330 0111223468999999999999999999999999999999987
Q ss_pred C--eEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC---eEEEEEecccceeeeeceeeEEEecC
Q 006229 587 F--TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENV---RKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 587 ~--~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg---~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
+ +++.++.+|...|++|+|+|++++|+||+.|++|+|||++++ .++..+..|... |.+++|+|+
T Consensus 93 ~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~-----v~~~~~~p~ 161 (345)
T 3fm0_A 93 DDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQD-----VKHVVWHPS 161 (345)
T ss_dssp C-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSC-----EEEEEECSS
T ss_pred CCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCC-----eEEEEECCC
Confidence 6 568899999999999999999999999999999999999876 455666666543 557788875
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.76 E-value=2e-17 Score=187.54 Aligned_cols=111 Identities=28% Similarity=0.430 Sum_probs=101.1
Q ss_pred EEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 006229 508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF 587 (655)
Q Consensus 508 ~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~ 587 (655)
.|++|+.|++|++|+... .+++..+.+|...|.+|+|+|||++|++|+.|++|+|||+.++
T Consensus 162 ~l~s~s~D~~v~lwd~~~-------------------~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g 222 (611)
T 1nr0_A 162 RIISGSDDNTVAIFEGPP-------------------FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG 222 (611)
T ss_dssp EEEEEETTSCEEEEETTT-------------------BEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred EEEEEeCCCeEEEEECCC-------------------CeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCC
Confidence 589999999999995322 2566788999999999999999999999999999999999999
Q ss_pred eEEEEec-------ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEec
Q 006229 588 TVKSTLE-------EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICC 637 (655)
Q Consensus 588 ~~l~tl~-------gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~ 637 (655)
+++.++. +|.+.|++|+|+|++++|+|++.|++|+|||+++++++.++..
T Consensus 223 ~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~ 279 (611)
T 1nr0_A 223 TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPV 279 (611)
T ss_dssp CEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred cEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecC
Confidence 9998884 8999999999999999999999999999999999998877753
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.76 E-value=6.5e-18 Score=178.89 Aligned_cols=173 Identities=18% Similarity=0.065 Sum_probs=125.6
Q ss_pred eccCCCCceEEEEecCCCCc------------ccccCcccCCCCcEEEeccCCCcEEEEecCCCC---------------
Q 006229 475 QHNGASSKSLLMFGSDGMGS------------LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDA--------------- 527 (655)
Q Consensus 475 ~~s~S~d~s~l~ws~dg~~~------------lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~--------------- 527 (655)
+.+++.++++.+|+...... -.+....+.+.+++|++|+.|++|++|+...+.
T Consensus 108 ~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v 187 (357)
T 4g56_B 108 ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCV 187 (357)
T ss_dssp EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEE
Confidence 33456677888887654211 112233456667888999999999999765543
Q ss_pred ------------CCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCC-CCEEEEEeCCCcEEEEeCCCCeEEEEec
Q 006229 528 ------------DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLE 594 (655)
Q Consensus 528 ------------d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpd-G~lLaSgs~DgtVrIWDl~t~~~l~tl~ 594 (655)
.+.+..+++|++.++..... ..+..|...|++|+|+|+ +.+|++|+.|++|+|||+++++++.++.
T Consensus 188 ~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~-~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~ 266 (357)
T 4g56_B 188 AACPGKDTIFLSCGEDGRILLWDTRKPKPATR-IDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSA 266 (357)
T ss_dssp EECTTCSSCEEEEETTSCEEECCTTSSSCBCB-CCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEEC
T ss_pred EEccCCCceeeeeccCCceEEEECCCCceeee-eeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEe
Confidence 11233446666655432221 233457778999999996 5699999999999999999999999999
Q ss_pred ccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEec
Q 006229 595 EHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAP 654 (655)
Q Consensus 595 gH~~~ItsVafsPdg-~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P 654 (655)
+|...|++|+|+|++ ++|+|||.|++|+|||+++++++..+ +|.. .|.+++|+|
T Consensus 267 ~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~-----~V~~vafsP 321 (357)
T 4g56_B 267 VHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRD-----FVTGVAWSP 321 (357)
T ss_dssp CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSS-----CEEEEEECS
T ss_pred ccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCC-----CEEEEEEeC
Confidence 999999999999987 57999999999999999999888665 4543 456788988
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-17 Score=171.48 Aligned_cols=165 Identities=21% Similarity=0.313 Sum_probs=122.5
Q ss_pred CceeccCCCCceEEEEecCCCC--cc--------cccCcccCCC--CcEEEeccCCCcEEEEecCCCCCCCCcccccccc
Q 006229 472 PTLQHNGASSKSLLMFGSDGMG--SL--------TSAPNQLTDM--DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEV 539 (655)
Q Consensus 472 ~~~~~s~S~d~s~l~ws~dg~~--~l--------asss~~l~~~--~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~ 539 (655)
...+++++.|+++.+|+..... .+ .+....+.+. +.+|++|+.|++|++|+......
T Consensus 67 g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~----------- 135 (297)
T 2pm7_B 67 GTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGT----------- 135 (297)
T ss_dssp CSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSC-----------
T ss_pred CCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCc-----------
Confidence 3578889999999999986421 10 1122233443 57899999999999997654310
Q ss_pred CCCceeeeEEeecCCCCCeeEEEEcCC-------------CCEEEEEeCCCcEEEEeCCCCe----EEEEecccCCCEEE
Q 006229 540 GKGFTFTEFQLIPASTSKVESCHFSPD-------------GKLLATGGHDKKAVLWCTESFT----VKSTLEEHTQWITD 602 (655)
Q Consensus 540 ~~~~t~~~v~~l~gH~~~V~sl~fSpd-------------G~lLaSgs~DgtVrIWDl~t~~----~l~tl~gH~~~Its 602 (655)
.....+.+|...|.+++|+|+ +++|++|+.|++|+|||+++++ ++.++.+|...|++
T Consensus 136 ------~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~ 209 (297)
T 2pm7_B 136 ------TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRD 209 (297)
T ss_dssp ------BCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEE
T ss_pred ------eeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEE
Confidence 012356789999999999997 5799999999999999998765 67789999999999
Q ss_pred EEEcCCC---CEEEEEeCCCcEEEEECCCCe--EEEEEecccceeeeeceeeEEEecC
Q 006229 603 VRFSPSL---SRLATSSADRTVRVWDTENVR--KLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 603 VafsPdg---~~LaSgS~DgtVrVWDl~tg~--~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
|+|+|++ .+|+|||.|++|+|||++++. ....+... ..+...|.+++|+|+
T Consensus 210 v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~ 265 (297)
T 2pm7_B 210 VAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKE--EKFPDVLWRASWSLS 265 (297)
T ss_dssp EEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSS--SCCSSCEEEEEECSS
T ss_pred EEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeec--ccCCCcEEEEEECCC
Confidence 9999985 899999999999999998743 11111110 112345678889885
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.75 E-value=3.9e-17 Score=173.77 Aligned_cols=166 Identities=18% Similarity=0.174 Sum_probs=130.7
Q ss_pred eeccCCCCceEEEEecCCCCcc------------cccCcccCC-CCcEEEeccCCCcEEEEecCCCCCCCCccccccccC
Q 006229 474 LQHNGASSKSLLMFGSDGMGSL------------TSAPNQLTD-MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVG 540 (655)
Q Consensus 474 ~~~s~S~d~s~l~ws~dg~~~l------------asss~~l~~-~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~ 540 (655)
++.+++.++.+.+|+.+..+.. .+....+.+ .+.+|++|+.|++|++|+..++....
T Consensus 49 ~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~---------- 118 (402)
T 2aq5_A 49 LICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL---------- 118 (402)
T ss_dssp EEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS----------
T ss_pred EEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc----------
Confidence 4445677888888987553221 122234455 66899999999999999776552110
Q ss_pred CCceeeeEEeecCCCCCeeEEEEcCCC-CEEEEEeCCCcEEEEeCCCCeEEEEe--cccCCCEEEEEEcCCCCEEEEEeC
Q 006229 541 KGFTFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSA 617 (655)
Q Consensus 541 ~~~t~~~v~~l~gH~~~V~sl~fSpdG-~lLaSgs~DgtVrIWDl~t~~~l~tl--~gH~~~ItsVafsPdg~~LaSgS~ 617 (655)
.....+..+.+|...|.+|+|+|++ .+|++|+.|++|+|||+++++++.++ .+|...|++|+|+|++.+|++++.
T Consensus 119 --~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 196 (402)
T 2aq5_A 119 --PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR 196 (402)
T ss_dssp --CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEET
T ss_pred --ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEec
Confidence 0113456778999999999999998 69999999999999999999999999 899999999999999999999999
Q ss_pred CCcEEEEECCCCeEEEEE-ecccceeeeeceeeEEEecC
Q 006229 618 DRTVRVWDTENVRKLTFI-CCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 618 DgtVrVWDl~tg~~v~~l-~~~~~~v~s~~Vss~~F~P~ 655 (655)
|++|+|||+++++++..+ ..|... .+.++.|+|+
T Consensus 197 d~~i~iwd~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 231 (402)
T 2aq5_A 197 DKRVRVIEPRKGTVVAEKDRPHEGT----RPVHAVFVSE 231 (402)
T ss_dssp TSEEEEEETTTTEEEEEEECSSCSS----SCCEEEECST
T ss_pred CCcEEEEeCCCCceeeeeccCCCCC----cceEEEEcCC
Confidence 999999999999999888 555432 2446677764
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=6.5e-17 Score=172.77 Aligned_cols=137 Identities=20% Similarity=0.272 Sum_probs=113.4
Q ss_pred CcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCc
Q 006229 499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKK 578 (655)
Q Consensus 499 s~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~Dgt 578 (655)
...+.+.+++|++|+.|++|++|+...+ +.+..+.+|...|.+++|+|++.+|++|+.|++
T Consensus 128 ~v~~s~dg~~l~s~~~d~~i~iwd~~~~-------------------~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~ 188 (393)
T 1erj_A 128 SVCFSPDGKFLATGAEDRLIRIWDIENR-------------------KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRT 188 (393)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTT-------------------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECCCC-------------------cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCc
Confidence 3355667789999999999999965443 466778899999999999999999999999999
Q ss_pred EEEEeCCCCeEEEEecccCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEEecccc--eeeeeceeeEEEecC
Q 006229 579 AVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENVRKLTFICCYKC--IFVSTAIGSCFFAPT 655 (655)
Q Consensus 579 VrIWDl~t~~~l~tl~gH~~~ItsVafsP-dg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~--~v~s~~Vss~~F~P~ 655 (655)
|+|||++++++..++. |...|++++|+| ++.+|++|+.|++|+|||++++.++..+..... ..+...|.+++|+|+
T Consensus 189 v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~ 267 (393)
T 1erj_A 189 VRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD 267 (393)
T ss_dssp EEEEETTTTEEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTT
T ss_pred EEEEECCCCeeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCC
Confidence 9999999999988876 677899999999 899999999999999999999998877732211 122345677888875
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.74 E-value=1e-16 Score=163.92 Aligned_cols=176 Identities=18% Similarity=0.249 Sum_probs=138.3
Q ss_pred CceeccCCCCceEEEEecCCCCc-------------ccccCcccCCCCcEEEeccCCCcEEEEecCCCC-----------
Q 006229 472 PTLQHNGASSKSLLMFGSDGMGS-------------LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDA----------- 527 (655)
Q Consensus 472 ~~~~~s~S~d~s~l~ws~dg~~~-------------lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~----------- 527 (655)
+.++++++.|+++.+|+...... -.+....+.+.+.+|++|+.|+.|++|......
T Consensus 51 ~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~ 130 (340)
T 4aow_A 51 PDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKD 130 (340)
T ss_dssp TTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC
T ss_pred CCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCc
Confidence 35788899999999999764211 122333556777899999999999999765543
Q ss_pred ---------------CCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCC--CEEEEEeCCCcEEEEeCCCCeEE
Q 006229 528 ---------------DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDG--KLLATGGHDKKAVLWCTESFTVK 590 (655)
Q Consensus 528 ---------------d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG--~lLaSgs~DgtVrIWDl~t~~~l 590 (655)
...+..+++|+.... ......+.+|...|.+++|++++ .++++++.|++|++||+++++++
T Consensus 131 ~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~ 208 (340)
T 4aow_A 131 VLSVAFSSDNRQIVSGSRDKTIKLWNTLGV--CKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLK 208 (340)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEECTTSC--EEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEE
T ss_pred eeEEEEeecCccceeecCCCeEEEEEeCCC--ceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCcee
Confidence 112344456655443 23344567899999999999864 58899999999999999999999
Q ss_pred EEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 591 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 591 ~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
..+.+|...|++|+|+|++++|++|+.|++|+|||+++++++..+..+.. +.++.|+|+
T Consensus 209 ~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~------v~~~~~~~~ 267 (340)
T 4aow_A 209 TNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI------INALCFSPN 267 (340)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSC------EEEEEECSS
T ss_pred eEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCce------EEeeecCCC
Confidence 99999999999999999999999999999999999999999988876643 445666663
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.7e-17 Score=173.28 Aligned_cols=159 Identities=13% Similarity=0.003 Sum_probs=118.6
Q ss_pred eccCCCCceEEEEecCCCC--------c----------ccccCcccCC--CCcEEEeccCCCcEEEEecCCCCCCCCccc
Q 006229 475 QHNGASSKSLLMFGSDGMG--------S----------LTSAPNQLTD--MDRFVDDGSLDDNVESFLSPDDADPRDRVG 534 (655)
Q Consensus 475 ~~s~S~d~s~l~ws~dg~~--------~----------lasss~~l~~--~~~~LasGS~D~tV~vW~s~d~~d~~d~~~ 534 (655)
+.+++.|+.+++|+.++.. . -.+....+.+ .+.++++|+.|++|++|+...+
T Consensus 88 ~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~-------- 159 (343)
T 3lrv_A 88 IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDD-------- 159 (343)
T ss_dssp EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSS--------
T ss_pred eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCC--------
Confidence 6677888899999766311 0 0122334566 6789999999999999976544
Q ss_pred cccccCCCceeeeEEee-cCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEE-EEecc-cCCCEEEEEEcCCCCE
Q 006229 535 RSAEVGKGFTFTEFQLI-PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK-STLEE-HTQWITDVRFSPSLSR 611 (655)
Q Consensus 535 ~l~d~~~~~t~~~v~~l-~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l-~tl~g-H~~~ItsVafsPdg~~ 611 (655)
+.+..+ ..|...|.+++|+|+|.+|++|+.|++|+|||+++++.+ .++.+ |...|++|+|+|++.+
T Consensus 160 -----------~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~ 228 (343)
T 3lrv_A 160 -----------SQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYW 228 (343)
T ss_dssp -----------CEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSE
T ss_pred -----------cEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCE
Confidence 223333 245567999999999999999999999999999999887 88888 9999999999999999
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEEecccceeeeece--eeEEEecC
Q 006229 612 LATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAI--GSCFFAPT 655 (655)
Q Consensus 612 LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~V--ss~~F~P~ 655 (655)
|++++.| +|+|||+++++++..+...... ...+ .+++|+|+
T Consensus 229 l~s~~~~-~v~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 271 (343)
T 3lrv_A 229 MVVECDQ-TVVCFDLRKDVGTLAYPTYTIP--EFKTGTVTYDIDDS 271 (343)
T ss_dssp EEEEESS-BEEEEETTSSTTCBSSCCCBC-------CCEEEEECTT
T ss_pred EEEEeCC-eEEEEEcCCCCcceeecccccc--cccccceEEEECCC
Confidence 9999955 9999999998776554432111 1112 35778775
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.74 E-value=7.5e-17 Score=167.09 Aligned_cols=180 Identities=16% Similarity=0.104 Sum_probs=135.1
Q ss_pred CCceeccCCCCceEEEEecCCCC--c--------ccccCcccCCCCcEEEeccCCCcEEEEecCCCC-------------
Q 006229 471 RPTLQHNGASSKSLLMFGSDGMG--S--------LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDA------------- 527 (655)
Q Consensus 471 ~~~~~~s~S~d~s~l~ws~dg~~--~--------lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~------------- 527 (655)
+...+++++.++.+.+|+.+... . ..+....+.+.++++++++.|+.|++|+...+.
T Consensus 19 ~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 98 (372)
T 1k8k_C 19 DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRA 98 (372)
T ss_dssp TSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSC
T ss_pred CCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCc
Confidence 34566667778888888876542 1 112223445666788888888999888654431
Q ss_pred ---------------CCCCccccccccCCCceeeeEEe-ecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC-------
Q 006229 528 ---------------DPRDRVGRSAEVGKGFTFTEFQL-IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT------- 584 (655)
Q Consensus 528 ---------------d~~d~~~~l~d~~~~~t~~~v~~-l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl------- 584 (655)
...+..+++|+............ ...|...|.+++|+|++++|++|+.|+.|++||+
T Consensus 99 v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~ 178 (372)
T 1k8k_C 99 ARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEE 178 (372)
T ss_dssp EEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSC
T ss_pred eeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccc
Confidence 01123345555555433333333 3678999999999999999999999999999995
Q ss_pred -----------CCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEe
Q 006229 585 -----------ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFA 653 (655)
Q Consensus 585 -----------~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~ 653 (655)
.+++++..+.+|...|++++|+|++.+|++++.|++|+|||+++++++..+..+... +.+++|+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-----v~~~~~~ 253 (372)
T 1k8k_C 179 RPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLP-----LLAVTFI 253 (372)
T ss_dssp CCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCC-----EEEEEEE
T ss_pred cccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCC-----eEEEEEe
Confidence 467899999999999999999999999999999999999999999999999877543 4567777
Q ss_pred cC
Q 006229 654 PT 655 (655)
Q Consensus 654 P~ 655 (655)
|+
T Consensus 254 ~~ 255 (372)
T 1k8k_C 254 TE 255 (372)
T ss_dssp ET
T ss_pred cC
Confidence 64
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.73 E-value=9.9e-18 Score=181.32 Aligned_cols=164 Identities=13% Similarity=0.115 Sum_probs=124.9
Q ss_pred CceeccCCCCceEEEEecCCCCc----------ccccCcccCC-CCcEEEeccCCCcEEEEecCCCC-------------
Q 006229 472 PTLQHNGASSKSLLMFGSDGMGS----------LTSAPNQLTD-MDRFVDDGSLDDNVESFLSPDDA------------- 527 (655)
Q Consensus 472 ~~~~~s~S~d~s~l~ws~dg~~~----------lasss~~l~~-~~~~LasGS~D~tV~vW~s~d~~------------- 527 (655)
+.++++++.++.+.+|+.+.... -.+....+.+ .+.+|++||.|++|++|+.....
T Consensus 132 ~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~ 211 (435)
T 4e54_B 132 PSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIW 211 (435)
T ss_dssp TTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCC
T ss_pred CCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCcc
Confidence 45777888899999998764211 1122234453 45788999999999999764321
Q ss_pred ---------------CCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeEEE
Q 006229 528 ---------------DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKS 591 (655)
Q Consensus 528 ---------------d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~-lLaSgs~DgtVrIWDl~t~~~l~ 591 (655)
...+..+++|+... +++..+.+|...|++|+|+|++. +|++|+.|++|+|||+++.+...
T Consensus 212 ~~~~~~~~~~~~l~~g~~dg~i~~wd~~~----~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~ 287 (435)
T 4e54_B 212 FCSLDVSASSRMVVTGDNVGNVILLNMDG----KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKA 287 (435)
T ss_dssp CCCEEEETTTTEEEEECSSSBEEEEESSS----CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSS
T ss_pred EEEEEECCCCCEEEEEeCCCcEeeeccCc----ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccc
Confidence 11233345555432 35567789999999999999876 88899999999999998876544
Q ss_pred Ee---cccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEeccc
Q 006229 592 TL---EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYK 639 (655)
Q Consensus 592 tl---~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~ 639 (655)
.+ .+|...|++|+|+|++.+|+|++.|++|+|||++++.+...+..|.
T Consensus 288 ~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~ 338 (435)
T 4e54_B 288 SFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHP 338 (435)
T ss_dssp CCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCC
T ss_pred eEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccc
Confidence 33 5899999999999999999999999999999999999888876654
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.5e-17 Score=185.50 Aligned_cols=133 Identities=20% Similarity=0.218 Sum_probs=107.5
Q ss_pred cEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 006229 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (655)
Q Consensus 507 ~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t 586 (655)
++|++||.|++|++|+...... ......+.+.+|...|.+|+|+|++++|+||+.|++|+|||+.+
T Consensus 396 ~~l~s~s~D~~i~~W~~~~~~~--------------~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~ 461 (694)
T 3dm0_A 396 DIIVSASRDKSIILWKLTKDDK--------------AYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAA 461 (694)
T ss_dssp SEEEEEETTSEEEEEECCCSTT--------------CSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred CEEEEEeCCCcEEEEEccCCCc--------------ccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 7899999999999997654310 11234567889999999999999999999999999999999999
Q ss_pred CeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 587 ~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
++++..+.+|...|++|+|+|++++|+|||.|++|+|||+.... ...+.... ..+...|.+++|+|+
T Consensus 462 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~-~~~~~~~~-~~h~~~v~~~~~~~~ 528 (694)
T 3dm0_A 462 GVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGEC-KYTISEGG-EGHRDWVSCVRFSPN 528 (694)
T ss_dssp TEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE-EEEECSST-TSCSSCEEEEEECSC
T ss_pred CcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCc-ceeeccCC-CCCCCcEEEEEEeCC
Confidence 99999999999999999999999999999999999999987543 33332111 112334567777764
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.5e-17 Score=176.01 Aligned_cols=168 Identities=17% Similarity=0.154 Sum_probs=117.1
Q ss_pred CCCCceeccCCC------CceEEEEecCCCCc---c---------cccCcccCCCCcEEEeccCCCcEEEEecCCCCCCC
Q 006229 469 ISRPTLQHNGAS------SKSLLMFGSDGMGS---L---------TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPR 530 (655)
Q Consensus 469 ~s~~~~~~s~S~------d~s~l~ws~dg~~~---l---------asss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~ 530 (655)
++++.++++++. +..+.+|+...... + .+....+.+.+. +++++.|++|++|+..++...
T Consensus 51 SpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~- 128 (357)
T 4g56_B 51 RRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESL- 128 (357)
T ss_dssp CSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC---------
T ss_pred CCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeecccccee-
Confidence 455666666665 55666776533110 0 112223344444 445667888888865444110
Q ss_pred CccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCC
Q 006229 531 DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 610 (655)
Q Consensus 531 d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~ 610 (655)
........+|...|++|+|+|+|++|++|+.|++|+|||+++++++..+.+|...|++|+|+|++.
T Consensus 129 --------------~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~ 194 (357)
T 4g56_B 129 --------------LVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKD 194 (357)
T ss_dssp --------------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCS
T ss_pred --------------EEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCC
Confidence 011123458999999999999999999999999999999999999999999999999999999875
Q ss_pred -EEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 611 -RLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 611 -~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
+|++++.|++|+|||+++++++..+..+.. ...+.+++|+|+
T Consensus 195 ~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~---~~~v~~v~~sp~ 237 (357)
T 4g56_B 195 TIFLSCGEDGRILLWDTRKPKPATRIDFCAS---DTIPTSVTWHPE 237 (357)
T ss_dssp SCEEEEETTSCEEECCTTSSSCBCBCCCTTC---CSCEEEEEECTT
T ss_pred ceeeeeccCCceEEEECCCCceeeeeeeccc---cccccchhhhhc
Confidence 799999999999999999887765543221 233567788874
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-16 Score=161.70 Aligned_cols=150 Identities=20% Similarity=0.266 Sum_probs=117.1
Q ss_pred CCCceeccCCCCceEEEEecCCCCc------------ccccCcccCC--CCcEEEeccCCCcEEEEecCCCCCCCCcccc
Q 006229 470 SRPTLQHNGASSKSLLMFGSDGMGS------------LTSAPNQLTD--MDRFVDDGSLDDNVESFLSPDDADPRDRVGR 535 (655)
Q Consensus 470 s~~~~~~s~S~d~s~l~ws~dg~~~------------lasss~~l~~--~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~ 535 (655)
++...+++++.++.+.+|+.+.... -.+....+.+ .+.+|++|+.|++|++|+...+..
T Consensus 21 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~------- 93 (351)
T 3f3f_A 21 FYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQE------- 93 (351)
T ss_dssp SSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSC-------
T ss_pred CCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcc-------
Confidence 3446778888899999998875311 1122224444 368999999999999997765521
Q ss_pred ccccCCCceeeeEEeecCCCCCeeEEEEcCC--CCEEEEEeCCCcEEEEeCCCCe-------------------------
Q 006229 536 SAEVGKGFTFTEFQLIPASTSKVESCHFSPD--GKLLATGGHDKKAVLWCTESFT------------------------- 588 (655)
Q Consensus 536 l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpd--G~lLaSgs~DgtVrIWDl~t~~------------------------- 588 (655)
......+..+..+.+|...|.+++|+|+ +.+|++++.|++|+|||+++++
T Consensus 94 ---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (351)
T 3f3f_A 94 ---ECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSD 170 (351)
T ss_dssp ---TTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCC
T ss_pred ---cccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccce
Confidence 1112234567788899999999999999 9999999999999999986442
Q ss_pred -----------------------------------EEEEecccCCCEEEEEEcCCC----CEEEEEeCCCcEEEEECCCC
Q 006229 589 -----------------------------------VKSTLEEHTQWITDVRFSPSL----SRLATSSADRTVRVWDTENV 629 (655)
Q Consensus 589 -----------------------------------~l~tl~gH~~~ItsVafsPdg----~~LaSgS~DgtVrVWDl~tg 629 (655)
.+..+.+|...|++|+|+|++ .+|++|+.|++|+|||++++
T Consensus 171 ~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~ 250 (351)
T 3f3f_A 171 FCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEK 250 (351)
T ss_dssp EEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEEC
T ss_pred eEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCC
Confidence 255677899999999999998 89999999999999999875
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.73 E-value=6.5e-17 Score=163.65 Aligned_cols=128 Identities=20% Similarity=0.260 Sum_probs=108.2
Q ss_pred CCCCceEEEEecCCCCcccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCC
Q 006229 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK 557 (655)
Q Consensus 478 ~S~d~s~l~ws~dg~~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~ 557 (655)
......++.|++++. +|++|+.|++|++|+...+. .....+..+.+|...
T Consensus 10 H~~~v~~~~~~~~~~---------------~l~~~~~dg~i~iw~~~~~~---------------~~~~~~~~~~~~~~~ 59 (351)
T 3f3f_A 10 HDDLVHDVVYDFYGR---------------HVATCSSDQHIKVFKLDKDT---------------SNWELSDSWRAHDSS 59 (351)
T ss_dssp CSSCEEEEEECSSSS---------------EEEEEETTSEEEEEEECSSS---------------CCEEEEEEEECCSSC
T ss_pred cccceeEEEEcCCCC---------------EEEEeeCCCeEEEEECCCCC---------------CcceecceeccCCCc
Confidence 344667777777554 88999999999999765431 123466778899999
Q ss_pred eeEEEEcC--CCCEEEEEeCCCcEEEEeCCCC---------eEEEEecccCCCEEEEEEcCC--CCEEEEEeCCCcEEEE
Q 006229 558 VESCHFSP--DGKLLATGGHDKKAVLWCTESF---------TVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVW 624 (655)
Q Consensus 558 V~sl~fSp--dG~lLaSgs~DgtVrIWDl~t~---------~~l~tl~gH~~~ItsVafsPd--g~~LaSgS~DgtVrVW 624 (655)
|++|+|+| |+++|++|+.|++|+|||++++ +++..+.+|...|++|+|+|+ +.+|++++.|++|+||
T Consensus 60 v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw 139 (351)
T 3f3f_A 60 IVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLY 139 (351)
T ss_dssp EEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEE
T ss_pred EEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEe
Confidence 99999999 6999999999999999999887 678899999999999999999 9999999999999999
Q ss_pred ECCCCeEEEEE
Q 006229 625 DTENVRKLTFI 635 (655)
Q Consensus 625 Dl~tg~~v~~l 635 (655)
|+++++++..+
T Consensus 140 d~~~~~~~~~~ 150 (351)
T 3f3f_A 140 DALEPSDLRSW 150 (351)
T ss_dssp ECSSTTCTTCC
T ss_pred cCCChHHhccc
Confidence 99987765443
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.72 E-value=4.9e-17 Score=172.32 Aligned_cols=162 Identities=9% Similarity=0.033 Sum_probs=127.4
Q ss_pred CCceeccCCCCceEEEEecCCCCcc--------cccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCC
Q 006229 471 RPTLQHNGASSKSLLMFGSDGMGSL--------TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKG 542 (655)
Q Consensus 471 ~~~~~~s~S~d~s~l~ws~dg~~~l--------asss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~ 542 (655)
+...+.+++.++.+.+|+....... .+....+.+.+++|++|+.|++|++|+..++
T Consensus 108 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~---------------- 171 (420)
T 3vl1_A 108 QMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDG---------------- 171 (420)
T ss_dssp SSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC----------------
T ss_pred CCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCC----------------
Confidence 3456777888899999987753221 1223355667789999999999999976544
Q ss_pred ceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecc---cCCCEEEE----------------
Q 006229 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE---HTQWITDV---------------- 603 (655)
Q Consensus 543 ~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~g---H~~~ItsV---------------- 603 (655)
+.+..+.+|...|.+++|+|++++|++|+.|++|+|||+++++++..+.. |...|.++
T Consensus 172 ---~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 248 (420)
T 3vl1_A 172 ---SNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTS 248 (420)
T ss_dssp ---CCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCC
T ss_pred ---cCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccC
Confidence 34566789999999999999999999999999999999999999999875 44445554
Q ss_pred -----EEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 604 -----RFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 604 -----afsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
+|+|++++|++|+.||+|+|||+++++.+..+.... ...|.+++|+|+
T Consensus 249 ~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~v~~~~~~~~ 301 (420)
T 3vl1_A 249 KKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKF----TCSCNSLTVDGN 301 (420)
T ss_dssp CCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTT----SSCEEEEEECSS
T ss_pred cccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEccccc----CCCceeEEEeCC
Confidence 457899999999999999999999999887775432 224567888875
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.5e-17 Score=176.35 Aligned_cols=167 Identities=10% Similarity=0.017 Sum_probs=133.7
Q ss_pred CCceeccCCCCceEEEEecCC---CC----------cccccCcccCCCCcEEEeccCCCcEEEEecC---CC--------
Q 006229 471 RPTLQHNGASSKSLLMFGSDG---MG----------SLTSAPNQLTDMDRFVDDGSLDDNVESFLSP---DD-------- 526 (655)
Q Consensus 471 ~~~~~~s~S~d~s~l~ws~dg---~~----------~lasss~~l~~~~~~LasGS~D~tV~vW~s~---d~-------- 526 (655)
+...+++++.|+.+.+|+... .. .-.+....+.+.+.+|++|+.|++|++|+.. .+
T Consensus 75 ~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~ 154 (437)
T 3gre_A 75 ETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNC 154 (437)
T ss_dssp SSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEE
T ss_pred CCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeecccc
Confidence 456888888999999998754 11 1112233556667889999999999999762 11
Q ss_pred ----------------------------C----CCCCccccccccCCCceeeeEEeecC--CCCCeeEEEEcCCCCEEEE
Q 006229 527 ----------------------------A----DPRDRVGRSAEVGKGFTFTEFQLIPA--STSKVESCHFSPDGKLLAT 572 (655)
Q Consensus 527 ----------------------------~----d~~d~~~~l~d~~~~~t~~~v~~l~g--H~~~V~sl~fSpdG~lLaS 572 (655)
. ...+..+++|+...+ .++..+.+ |...|++++|+|++++|++
T Consensus 155 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~h~~~v~~~~~s~~~~~l~s 231 (437)
T 3gre_A 155 ECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTL---ERLQIIENSPRHGAVSSICIDEECCVLIL 231 (437)
T ss_dssp EEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTC---CEEEEEECCGGGCCEEEEEECTTSCEEEE
T ss_pred ceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC---eeeEEEccCCCCCceEEEEECCCCCEEEE
Confidence 0 123455677777665 55666777 8899999999999999999
Q ss_pred EeCCCcEEEEeCCCCeEEEEec-ccCCCEEEEEEcC----CCCEEEEEeCCCcEEEEECCCCeEEEEEecccc
Q 006229 573 GGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSP----SLSRLATSSADRTVRVWDTENVRKLTFICCYKC 640 (655)
Q Consensus 573 gs~DgtVrIWDl~t~~~l~tl~-gH~~~ItsVafsP----dg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~ 640 (655)
|+.|++|+|||+++++++.++. +|...|++|+|+| ++.+|++|+.|++|+|||+++++++..+..+..
T Consensus 232 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 304 (437)
T 3gre_A 232 GTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDE 304 (437)
T ss_dssp EETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSS
T ss_pred EcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCC
Confidence 9999999999999999999986 8999999997765 577999999999999999999999999987753
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.71 E-value=2e-16 Score=165.96 Aligned_cols=164 Identities=16% Similarity=0.213 Sum_probs=130.9
Q ss_pred Cce-eccCCCCceEEEEecCC------CCccc--------------------ccCcccCCCCcEEEeccCCCcEEEEecC
Q 006229 472 PTL-QHNGASSKSLLMFGSDG------MGSLT--------------------SAPNQLTDMDRFVDDGSLDDNVESFLSP 524 (655)
Q Consensus 472 ~~~-~~s~S~d~s~l~ws~dg------~~~la--------------------sss~~l~~~~~~LasGS~D~tV~vW~s~ 524 (655)
... +.+++.++.+.+|+... ...+. +....+.+.+ ++++|+.|+.|++|+..
T Consensus 137 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~ 215 (397)
T 1sq9_A 137 LSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELS 215 (397)
T ss_dssp -CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETT
T ss_pred CceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECC
Confidence 345 77777888999998765 21111 1222445566 89999999999999654
Q ss_pred CCCCCCCccccccccCCCceeeeEEeecC---C---CCCeeEEEEcCCCCEEEEEeCC---CcEEEEeCCCCeEEEEecc
Q 006229 525 DDADPRDRVGRSAEVGKGFTFTEFQLIPA---S---TSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEE 595 (655)
Q Consensus 525 d~~d~~d~~~~l~d~~~~~t~~~v~~l~g---H---~~~V~sl~fSpdG~lLaSgs~D---gtVrIWDl~t~~~l~tl~g 595 (655)
.+ ..+..+.. | ...|.+++|+|++++|++++.| +.|+|||+++++++..+.+
T Consensus 216 ~~-------------------~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~ 276 (397)
T 1sq9_A 216 TL-------------------RPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSV 276 (397)
T ss_dssp TT-------------------EEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECB
T ss_pred CC-------------------ceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceecc
Confidence 43 45566667 8 9999999999999999999999 9999999999999999999
Q ss_pred -------------cCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEe------ccc----------ceeeeec
Q 006229 596 -------------HTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFIC------CYK----------CIFVSTA 646 (655)
Q Consensus 596 -------------H~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~------~~~----------~~v~s~~ 646 (655)
|...|++++|+|++.+|++++.|++|+|||+++++++..+. .|. ...+...
T Consensus 277 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 356 (397)
T 1sq9_A 277 PTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG 356 (397)
T ss_dssp C--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC
T ss_pred CcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCc
Confidence 99999999999999999999999999999999999999998 440 0001345
Q ss_pred eeeEEEecC
Q 006229 647 IGSCFFAPT 655 (655)
Q Consensus 647 Vss~~F~P~ 655 (655)
|.+++|+|+
T Consensus 357 v~~~~~~~~ 365 (397)
T 1sq9_A 357 VFDVKFLKK 365 (397)
T ss_dssp EEEEEEECT
T ss_pred eeEEEeccc
Confidence 678888885
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.71 E-value=9.3e-17 Score=166.50 Aligned_cols=166 Identities=13% Similarity=0.162 Sum_probs=119.7
Q ss_pred ceeccCCCCceEEEEecCCCC--c--------ccccCcccCCC--CcEEEeccCCCcEEEEecCCCC-------------
Q 006229 473 TLQHNGASSKSLLMFGSDGMG--S--------LTSAPNQLTDM--DRFVDDGSLDDNVESFLSPDDA------------- 527 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~--~--------lasss~~l~~~--~~~LasGS~D~tV~vW~s~d~~------------- 527 (655)
..+++++.|+++.+|+..... . -.+....+.+. +.+|++|+.|++|++|+.....
T Consensus 72 ~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~ 151 (316)
T 3bg1_A 72 NILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTI 151 (316)
T ss_dssp SCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSS
T ss_pred CEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccC
Confidence 467777788888888875421 0 01122233333 5678888889999888654321
Q ss_pred ---------------------------------CCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCC----CEE
Q 006229 528 ---------------------------------DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDG----KLL 570 (655)
Q Consensus 528 ---------------------------------d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG----~lL 570 (655)
.+.+..+++|+......+.++..+.+|...|.+|+|+|++ .+|
T Consensus 152 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~l 231 (316)
T 3bg1_A 152 GCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTI 231 (316)
T ss_dssp CBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEE
T ss_pred CcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceE
Confidence 1123445777765444455777889999999999999986 899
Q ss_pred EEEeCCCcEEEEeCCCC---e-EEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-C--eEEEEEecc
Q 006229 571 ATGGHDKKAVLWCTESF---T-VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-V--RKLTFICCY 638 (655)
Q Consensus 571 aSgs~DgtVrIWDl~t~---~-~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~t-g--~~v~~l~~~ 638 (655)
++|+.|++|+|||+++. . ....+.+|...|++|+|+|++.+||+++.|++|+||++.. + .|+..+...
T Consensus 232 as~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~~g~~~~~~~~~~~ 306 (316)
T 3bg1_A 232 ASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDVNKG 306 (316)
T ss_dssp EEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECTTSCEEEEEECC--
T ss_pred EEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECCCCcEEEeeeccCC
Confidence 99999999999999762 1 2335567999999999999999999999999999999863 3 455555443
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-16 Score=166.05 Aligned_cols=169 Identities=8% Similarity=-0.038 Sum_probs=127.2
Q ss_pred CCceeccCCCCceEEEEecCCCCccc----ccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceee
Q 006229 471 RPTLQHNGASSKSLLMFGSDGMGSLT----SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFT 546 (655)
Q Consensus 471 ~~~~~~s~S~d~s~l~ws~dg~~~la----sss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~ 546 (655)
+...+++++.|+.+.+|+......+. .....+..+.. +++|+.|++|++|..... ..+|+.... .
T Consensus 47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~v~~~~~~~~-~~s~s~D~~i~~w~~~~~-------~~~~~~~~~---~ 115 (343)
T 3lrv_A 47 DKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPA-IISRGPCNRLLLLYPGNQ-------ITILDSKTN---K 115 (343)
T ss_dssp EEEEEEEEEETTEEEEEEESSSSCEEEEEEECCCTTCCCCS-EEEECSTTEEEEEETTTE-------EEEEETTTC---C
T ss_pred CCCEEEEECCCCcEEEEECCCCcEEEEEecCCceeeeeCCc-eEEecCCCeEEEEEccCc-------eEEeecCCc---c
Confidence 34678889999999999987532211 11112222223 899999999999965432 233444443 2
Q ss_pred eEEee-cCCCCCeeEEEEcC--CCCEEEEEeCCCcEEEEeCCCCeEEEEec-ccCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 006229 547 EFQLI-PASTSKVESCHFSP--DGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVR 622 (655)
Q Consensus 547 ~v~~l-~gH~~~V~sl~fSp--dG~lLaSgs~DgtVrIWDl~t~~~l~tl~-gH~~~ItsVafsPdg~~LaSgS~DgtVr 622 (655)
.+..+ .+|.+.|.+++|+| ++++|++|+.|++|+|||+++++++..+. .|...|++++|+|++.+|++|+.|++|+
T Consensus 116 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~ 195 (343)
T 3lrv_A 116 VLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILD 195 (343)
T ss_dssp EEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEE
T ss_pred eeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEE
Confidence 23333 37788999999999 99999999999999999999999987774 4566899999999999999999999999
Q ss_pred EEECCCCeEE-EEEec-ccceeeeeceeeEEEecC
Q 006229 623 VWDTENVRKL-TFICC-YKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 623 VWDl~tg~~v-~~l~~-~~~~v~s~~Vss~~F~P~ 655 (655)
|||+++++++ ..+.. |.. .|.+++|+|+
T Consensus 196 iwd~~~~~~~~~~~~~~h~~-----~v~~l~fs~~ 225 (343)
T 3lrv_A 196 VYNLSSPDQASSRFPVDEEA-----KIKEVKFADN 225 (343)
T ss_dssp EEESSCTTSCCEECCCCTTS-----CEEEEEECTT
T ss_pred EEECCCCCCCccEEeccCCC-----CEEEEEEeCC
Confidence 9999999888 77776 554 4568888885
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.71 E-value=6.6e-17 Score=167.60 Aligned_cols=139 Identities=16% Similarity=0.151 Sum_probs=108.7
Q ss_pred CCceEEEEecCCCCcccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCee
Q 006229 480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE 559 (655)
Q Consensus 480 ~d~s~l~ws~dg~~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~ 559 (655)
.....+.|++++. +|++|+.|++|++|+...+ ....+..+.+|.+.|.
T Consensus 14 ~~V~~v~~s~~g~---------------~lasgs~D~~v~lwd~~~~-----------------~~~~~~~l~gH~~~V~ 61 (316)
T 3bg1_A 14 DMIHDAQMDYYGT---------------RLATCSSDRSVKIFDVRNG-----------------GQILIADLRGHEGPVW 61 (316)
T ss_dssp CCEEEEEECGGGC---------------EEEEEETTTEEEEEEEETT-----------------EEEEEEEEECCSSCEE
T ss_pred CeEEEeeEcCCCC---------------EEEEEeCCCeEEEEEecCC-----------------CcEEEEEEcCCCccEE
Confidence 3456666766544 8999999999999965433 1134677889999999
Q ss_pred EEEEcC--CCCEEEEEeCCCcEEEEeCCCC--eEEEEecccCCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCeEE-
Q 006229 560 SCHFSP--DGKLLATGGHDKKAVLWCTESF--TVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENVRKL- 632 (655)
Q Consensus 560 sl~fSp--dG~lLaSgs~DgtVrIWDl~t~--~~l~tl~gH~~~ItsVafsPd--g~~LaSgS~DgtVrVWDl~tg~~v- 632 (655)
+|+|++ ++++|++|+.|++|+|||++++ .++.++.+|...|++|+|+|+ +.+|++|+.|++|+|||++++...
T Consensus 62 ~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~ 141 (316)
T 3bg1_A 62 QVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWE 141 (316)
T ss_dssp EEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEE
T ss_pred EEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcc
Confidence 999986 4899999999999999999987 467788999999999999998 789999999999999999876322
Q ss_pred --EEEecccceeeeeceeeEEEecC
Q 006229 633 --TFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 633 --~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
..+..|. ..+.+++|+|+
T Consensus 142 ~~~~~~~h~-----~~v~~~~~~~~ 161 (316)
T 3bg1_A 142 VKKINNAHT-----IGCNAVSWAPA 161 (316)
T ss_dssp ECCBTTSSS-----SCBCCCEECCC
T ss_pred eeeeecccc-----CCcceEEEccc
Confidence 2223333 23456666663
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.71 E-value=7.4e-16 Score=156.69 Aligned_cols=161 Identities=18% Similarity=0.140 Sum_probs=129.8
Q ss_pred CCceeccCCCCceEEEEecCCCCc-------------ccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCcccccc
Q 006229 471 RPTLQHNGASSKSLLMFGSDGMGS-------------LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSA 537 (655)
Q Consensus 471 ~~~~~~s~S~d~s~l~ws~dg~~~-------------lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~ 537 (655)
+...+.+++ ++.+.+|+.+.... ..+....+.+.+.++++++.|+.|++|+...+.
T Consensus 62 ~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~---------- 130 (337)
T 1gxr_A 62 PTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT---------- 130 (337)
T ss_dssp SSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC-----------
T ss_pred CCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCC----------
Confidence 345666666 88999998865321 112223456667889999999999999665431
Q ss_pred ccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeC
Q 006229 538 EVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617 (655)
Q Consensus 538 d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~ 617 (655)
......+..|...|.+++|+|++++|++++.|+.|++||+++++.+..+.+|...|++++|+|++.+|++++.
T Consensus 131 -------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 203 (337)
T 1gxr_A 131 -------PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL 203 (337)
T ss_dssp --------EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred -------cceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEec
Confidence 1345667789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 618 DRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 618 DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
|+.|++||+++++++..+.... .+.+++|+|+
T Consensus 204 dg~i~~~d~~~~~~~~~~~~~~------~v~~~~~s~~ 235 (337)
T 1gxr_A 204 DNTVRSWDLREGRQLQQHDFTS------QIFSLGYCPT 235 (337)
T ss_dssp TSEEEEEETTTTEEEEEEECSS------CEEEEEECTT
T ss_pred CCcEEEEECCCCceEeeecCCC------ceEEEEECCC
Confidence 9999999999999888775332 3556777774
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.71 E-value=2.6e-16 Score=166.28 Aligned_cols=83 Identities=22% Similarity=0.245 Sum_probs=79.1
Q ss_pred EEeecCCCCCeeEEEEcCCCCEEEEEeCCCc-EEEEeCCCCeEEEEec-c-cCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 006229 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKK-AVLWCTESFTVKSTLE-E-HTQWITDVRFSPSLSRLATSSADRTVRVW 624 (655)
Q Consensus 548 v~~l~gH~~~V~sl~fSpdG~lLaSgs~Dgt-VrIWDl~t~~~l~tl~-g-H~~~ItsVafsPdg~~LaSgS~DgtVrVW 624 (655)
+..+.+|.+.|++|+|+|||++|++|+.|++ |+|||+++++++.++. + |...|++|+|+|++.+|++++.|++|+||
T Consensus 188 ~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw 267 (355)
T 3vu4_A 188 GVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVF 267 (355)
T ss_dssp CEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEE
T ss_pred cEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEE
Confidence 6788999999999999999999999999999 9999999999999998 6 99999999999999999999999999999
Q ss_pred ECCCCe
Q 006229 625 DTENVR 630 (655)
Q Consensus 625 Dl~tg~ 630 (655)
|++++.
T Consensus 268 ~~~~~~ 273 (355)
T 3vu4_A 268 EIFNDQ 273 (355)
T ss_dssp ESSCCS
T ss_pred EccCCC
Confidence 998653
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.4e-17 Score=171.32 Aligned_cols=128 Identities=16% Similarity=0.173 Sum_probs=100.3
Q ss_pred CcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 006229 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (655)
Q Consensus 506 ~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~ 585 (655)
+++|++|+.|++|++|+..++ .+..+..+.+|...|.+++|+|++++|++|+.|++|+|||+.
T Consensus 23 g~~l~~~~~d~~i~iw~~~~~-----------------~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 23 RTEFVTTTATNQVELYEQDGN-----------------GWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp SSEEECCCSSSCBCEEEEETT-----------------EEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred CCEEEEecCCCEEEEEEccCC-----------------ceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence 358899999999999965432 124566778999999999999999999999999999999999
Q ss_pred CCe---EEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---EEEEEec-ccceeeeeceeeEEEecC
Q 006229 586 SFT---VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVR---KLTFICC-YKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 586 t~~---~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~---~v~~l~~-~~~~v~s~~Vss~~F~P~ 655 (655)
++. .+..+.+|...|++|+|+|++++|++|+.|++|+|||++++. ++..+.. |.. .|.+++|+|+
T Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~ 157 (377)
T 3dwl_C 86 PDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRS-----TILSLDWHPN 157 (377)
T ss_dssp ---CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCS-----CEEEEEECTT
T ss_pred CCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCC-----CeEEEEEcCC
Confidence 877 677888999999999999999999999999999999999887 3666665 443 4567788875
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.6e-17 Score=183.91 Aligned_cols=160 Identities=10% Similarity=-0.006 Sum_probs=126.7
Q ss_pred CceeccCCCCceEEEEecCCCCcc-------------------cccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCc
Q 006229 472 PTLQHNGASSKSLLMFGSDGMGSL-------------------TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDR 532 (655)
Q Consensus 472 ~~~~~s~S~d~s~l~ws~dg~~~l-------------------asss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~ 532 (655)
..++++++.|+++.+|+....... .+....+.+ +..|++|+.|++|++|+..++.
T Consensus 225 ~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~-~~~lasgs~DgtV~lWD~~~~~----- 298 (524)
T 2j04_B 225 VGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLS-PTTVVCGFKNGFVAEFDLTDPE----- 298 (524)
T ss_dssp SCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESS-SSEEEEEETTSEEEEEETTBCS-----
T ss_pred CceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecC-CCeEEEEeCCCEEEEEECCCCC-----
Confidence 357888888999999998643110 011122233 3579999999999999765431
Q ss_pred cccccccCCCceeeeEEeecCCCCCeeEE--EEcCCC-CEEEEEeCCCcEEEEeCCCCeEEEEecccCC--CEEEEEEcC
Q 006229 533 VGRSAEVGKGFTFTEFQLIPASTSKVESC--HFSPDG-KLLATGGHDKKAVLWCTESFTVKSTLEEHTQ--WITDVRFSP 607 (655)
Q Consensus 533 ~~~l~d~~~~~t~~~v~~l~gH~~~V~sl--~fSpdG-~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~--~ItsVafsP 607 (655)
.....+.+|...|++| +|+++| .+||||+.|++|||||+++++++.++.+|.. .|++|+|+|
T Consensus 299 -------------~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp 365 (524)
T 2j04_B 299 -------------VPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCP 365 (524)
T ss_dssp -------------SCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEET
T ss_pred -------------CceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCC
Confidence 1234567899999999 578888 8999999999999999999988888888874 589999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 608 SLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 608 dg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
++..|++++.|++|+|||++++.++.++.+|... |.+++|+|+
T Consensus 366 ~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~-----V~sva~Sp~ 408 (524)
T 2j04_B 366 QIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETT-----ITAIGVSRL 408 (524)
T ss_dssp TTTEEEEECSSSEEEEEETTCTTCCEEEEECSSC-----EEEEECCSS
T ss_pred CcCeEEEeCCCCcEEEEECcccccceeeecCCCc-----eEEEEeCCC
Confidence 9999999999999999999999998888877654 557788875
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.70 E-value=2.4e-16 Score=167.54 Aligned_cols=148 Identities=10% Similarity=0.039 Sum_probs=109.7
Q ss_pred cCCCCcEE--EeccCCCcEEEEecCCCC------------------CCC------CccccccccCCCceeeeEEeecCCC
Q 006229 502 LTDMDRFV--DDGSLDDNVESFLSPDDA------------------DPR------DRVGRSAEVGKGFTFTEFQLIPAST 555 (655)
Q Consensus 502 l~~~~~~L--asGS~D~tV~vW~s~d~~------------------d~~------d~~~~l~d~~~~~t~~~v~~l~gH~ 555 (655)
|.+.++++ ++++.|++|++|+..++. ++. +..+.+|+..++.. .......+|.
T Consensus 141 fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~-~~~~~~~~~~ 219 (365)
T 4h5i_A 141 ISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSC-IARKTDFDKN 219 (365)
T ss_dssp ECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCE-EEEECCCCTT
T ss_pred EcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccceeEEEEEeccCcc-eeeeecCCCC
Confidence 34444454 577789999999876653 000 01112222222211 1223455788
Q ss_pred CCeeEEEEcCCCCEEEEEeCCC----cEEEEeCCCCeE----EEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 006229 556 SKVESCHFSPDGKLLATGGHDK----KAVLWCTESFTV----KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (655)
Q Consensus 556 ~~V~sl~fSpdG~lLaSgs~Dg----tVrIWDl~t~~~----l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~ 627 (655)
..|.+|+|+||+++|++++.|+ ++++||+..... ...+.+|...|++|+|+|+|++||+|+.|++|+|||++
T Consensus 220 ~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~ 299 (365)
T 4h5i_A 220 WSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLK 299 (365)
T ss_dssp EEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETT
T ss_pred CCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECC
Confidence 8999999999999999999887 688999876643 45678999999999999999999999999999999999
Q ss_pred CCeEEEEE-ecccceeeeeceeeEEEecC
Q 006229 628 NVRKLTFI-CCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 628 tg~~v~~l-~~~~~~v~s~~Vss~~F~P~ 655 (655)
+++++..+ .+|.. .|.+++|+||
T Consensus 300 ~~~~~~~~~~gH~~-----~V~~v~fSpd 323 (365)
T 4h5i_A 300 DLSMSKIFKQAHSF-----AITEVTISPD 323 (365)
T ss_dssp TTEEEEEETTSSSS-----CEEEEEECTT
T ss_pred CCcEEEEecCcccC-----CEEEEEECCC
Confidence 99999886 45654 4668999986
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.70 E-value=5.4e-16 Score=171.56 Aligned_cols=159 Identities=21% Similarity=0.313 Sum_probs=129.1
Q ss_pred CCCceeccCCCCceEEEEecCCCCc-------ccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCC
Q 006229 470 SRPTLQHNGASSKSLLMFGSDGMGS-------LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKG 542 (655)
Q Consensus 470 s~~~~~~s~S~d~s~l~ws~dg~~~-------lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~ 542 (655)
++...+.+++.++.+.+|+..+... ..+....+.+.+++|++++.|+.|++|+..
T Consensus 354 ~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~------------------ 415 (577)
T 2ymu_A 354 PDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN------------------ 415 (577)
T ss_dssp TTSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT------------------
T ss_pred CCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC------------------
Confidence 3445667777888888898765311 112223456677889999999999999421
Q ss_pred ceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 006229 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622 (655)
Q Consensus 543 ~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVr 622 (655)
.+.+..+.+|...|.+++|+||+++|++++.|++|+|||. +++++.++.+|...|++|+|+|++++|++++.|++|+
T Consensus 416 --~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~ 492 (577)
T 2ymu_A 416 --GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK 492 (577)
T ss_dssp --CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEE
T ss_pred --CCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEE
Confidence 1356677899999999999999999999999999999996 5688889999999999999999999999999999999
Q ss_pred EEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 623 VWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 623 VWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
|||. +++++..+.+|... |.+++|+|+
T Consensus 493 iw~~-~~~~~~~~~~h~~~-----v~~l~~s~d 519 (577)
T 2ymu_A 493 LWNR-NGQLLQTLTGHSSS-----VRGVAFSPD 519 (577)
T ss_dssp EEET-TSCEEEEEECCSSC-----EEEEEECTT
T ss_pred EEcC-CCCEEEEEeCCCCC-----EEEEEEcCC
Confidence 9995 68889999888654 457788885
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.70 E-value=8.2e-16 Score=157.24 Aligned_cols=180 Identities=17% Similarity=0.183 Sum_probs=129.3
Q ss_pred CCceeccCCCCceEEEEecCCCCccc--------ccCcccCCCCcEEEeccCCCcEEEEecCCCC---------------
Q 006229 471 RPTLQHNGASSKSLLMFGSDGMGSLT--------SAPNQLTDMDRFVDDGSLDDNVESFLSPDDA--------------- 527 (655)
Q Consensus 471 ~~~~~~s~S~d~s~l~ws~dg~~~la--------sss~~l~~~~~~LasGS~D~tV~vW~s~d~~--------------- 527 (655)
+...+.+++.++.+..|......... .....+...+.++++|+.|+.+++|+.....
T Consensus 97 dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~ 176 (340)
T 4aow_A 97 DGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSC 176 (340)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEE
T ss_pred CCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccc
Confidence 34566677777777777776532111 1111334555678888888888888653321
Q ss_pred --------------CCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe
Q 006229 528 --------------DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL 593 (655)
Q Consensus 528 --------------d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl 593 (655)
...+..+++|+.... ..+..+.+|.+.|++|+|+|++++|++|+.|++|+|||+++.+++..+
T Consensus 177 ~~~~~~~~~~~~~s~~~d~~i~i~d~~~~---~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~ 253 (340)
T 4aow_A 177 VRFSPNSSNPIIVSCGWDKLVKVWNLANC---KLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL 253 (340)
T ss_dssp EEECSCSSSCEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEccCCCCcEEEEEcCCCEEEEEECCCC---ceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeee
Confidence 011233455555544 567788899999999999999999999999999999999999999888
Q ss_pred cccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccc----eeeeeceeeEEEecC
Q 006229 594 EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKC----IFVSTAIGSCFFAPT 655 (655)
Q Consensus 594 ~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~----~v~s~~Vss~~F~P~ 655 (655)
.+| ..|++++|+|++. +++++.|++|+|||++++.++..+..... ..+...|.+++|+|+
T Consensus 254 ~~~-~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d 317 (340)
T 4aow_A 254 DGG-DIINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSAD 317 (340)
T ss_dssp ECS-SCEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTT
T ss_pred cCC-ceEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCC
Confidence 754 6899999999875 55666799999999999988887764322 123445778899986
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=3e-16 Score=167.36 Aligned_cols=185 Identities=15% Similarity=0.113 Sum_probs=126.3
Q ss_pred CCCceeccCCCCceEEEEecCCCCc-------------------------------ccccCcccCCCC--cEEEeccCCC
Q 006229 470 SRPTLQHNGASSKSLLMFGSDGMGS-------------------------------LTSAPNQLTDMD--RFVDDGSLDD 516 (655)
Q Consensus 470 s~~~~~~s~S~d~s~l~ws~dg~~~-------------------------------lasss~~l~~~~--~~LasGS~D~ 516 (655)
++...+++++.++.+.+|+...... -.+....+.+.+ ..+++++.|+
T Consensus 38 ~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~ 117 (447)
T 3dw8_B 38 HSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDK 117 (447)
T ss_dssp SSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSS
T ss_pred CCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCC
Confidence 3456788888899999998774321 112223444544 6889999999
Q ss_pred cEEEEecCCCCC-----------C------CCcccccccc---CCCceeeeEEe-ecCCCCCeeEEEEcCCCCEEEEEeC
Q 006229 517 NVESFLSPDDAD-----------P------RDRVGRSAEV---GKGFTFTEFQL-IPASTSKVESCHFSPDGKLLATGGH 575 (655)
Q Consensus 517 tV~vW~s~d~~d-----------~------~d~~~~l~d~---~~~~t~~~v~~-l~gH~~~V~sl~fSpdG~lLaSgs~ 575 (655)
+|++|+...... + ......+... .......+.+. ..+|...|.+++|+|++++|++| .
T Consensus 118 ~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~ 196 (447)
T 3dw8_B 118 TIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-D 196 (447)
T ss_dssp CEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-C
T ss_pred eEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-C
Confidence 999997654210 0 0000000000 00001112233 36899999999999999999998 7
Q ss_pred CCcEEEEeCC-CCeEEE-------EecccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeE----EEEEeccccee
Q 006229 576 DKKAVLWCTE-SFTVKS-------TLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENVRK----LTFICCYKCIF 642 (655)
Q Consensus 576 DgtVrIWDl~-t~~~l~-------tl~gH~~~ItsVafsPdg-~~LaSgS~DgtVrVWDl~tg~~----v~~l~~~~~~v 642 (655)
|++|+|||++ ..+++. .+.+|...|++|+|+|++ .+|++|+.|++|+|||++++++ +..+..+....
T Consensus 197 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 276 (447)
T 3dw8_B 197 DLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPS 276 (447)
T ss_dssp SSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC----
T ss_pred CCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCcc
Confidence 9999999998 445554 367899999999999998 9999999999999999999887 67777765421
Q ss_pred ee-------eceeeEEEecC
Q 006229 643 VS-------TAIGSCFFAPT 655 (655)
Q Consensus 643 ~s-------~~Vss~~F~P~ 655 (655)
.. ..|.+++|+|+
T Consensus 277 ~~~~~~~~~~~v~~~~~s~~ 296 (447)
T 3dw8_B 277 NRSFFSEIISSISDVKFSHS 296 (447)
T ss_dssp -CCHHHHHTTCEEEEEECTT
T ss_pred ccccccccCceEEEEEECCC
Confidence 11 15678888885
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.69 E-value=7.5e-16 Score=161.97 Aligned_cols=158 Identities=17% Similarity=0.177 Sum_probs=123.9
Q ss_pred ceeccCCCCceEEEEecCCCCcc----------cccCcccCC-CCcEEEeccCCCcEEEEecCCCCCCCCccccccccCC
Q 006229 473 TLQHNGASSKSLLMFGSDGMGSL----------TSAPNQLTD-MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGK 541 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~~l----------asss~~l~~-~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~ 541 (655)
..+++++.++.+.+|+....... .+....+.+ ...++++++.|++|++|+....
T Consensus 87 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--------------- 151 (383)
T 3ei3_B 87 TTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGS--------------- 151 (383)
T ss_dssp TEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSC---------------
T ss_pred CEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCC---------------
Confidence 67888888999999998753221 111223444 4578899999999999965421
Q ss_pred CceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCC-EEEEEeCCCc
Q 006229 542 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRT 620 (655)
Q Consensus 542 ~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~-~LaSgS~Dgt 620 (655)
....+....+|...|.+++|+|++++|++|+.|++|++||+ +++++.++.+|...|++|+|+|++. +|++|+.|++
T Consensus 152 --~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~ 228 (383)
T 3ei3_B 152 --VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDAT 228 (383)
T ss_dssp --EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSE
T ss_pred --ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCE
Confidence 12233333456688999999999999999999999999999 5788889999999999999999999 9999999999
Q ss_pred EEEEECCC----CeEEEEEecccceeeeeceeeEEEec
Q 006229 621 VRVWDTEN----VRKLTFICCYKCIFVSTAIGSCFFAP 654 (655)
Q Consensus 621 VrVWDl~t----g~~v~~l~~~~~~v~s~~Vss~~F~P 654 (655)
|+|||+++ +.++..+. |. ..|.+++|+|
T Consensus 229 i~iwd~~~~~~~~~~~~~~~-~~-----~~v~~~~~s~ 260 (383)
T 3ei3_B 229 VKLWDLRNIKDKNSYIAEMP-HE-----KPVNAAYFNP 260 (383)
T ss_dssp EEEEEGGGCCSTTCEEEEEE-CS-----SCEEEEEECT
T ss_pred EEEEeCCCCCcccceEEEec-CC-----CceEEEEEcC
Confidence 99999998 66776663 33 3456788887
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.8e-16 Score=162.99 Aligned_cols=176 Identities=11% Similarity=0.092 Sum_probs=139.1
Q ss_pred CCceeccCCCCceEEEEecCCCCc-------ccccCcccCCCCcEEEeccCCCcEEEEecCCCCC---------------
Q 006229 471 RPTLQHNGASSKSLLMFGSDGMGS-------LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDAD--------------- 528 (655)
Q Consensus 471 ~~~~~~s~S~d~s~l~ws~dg~~~-------lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d--------------- 528 (655)
+...+.+++.++.+.+|+.++... ..+....+.+.+.+|++++.|+.|++|+..++..
T Consensus 119 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 198 (425)
T 1r5m_A 119 DGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSIN 198 (425)
T ss_dssp TSSEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC--------
T ss_pred CCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCcccee
Confidence 445777788889999998655321 1222335566778899999999999998765431
Q ss_pred -------------------------CCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 006229 529 -------------------------PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 583 (655)
Q Consensus 529 -------------------------~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWD 583 (655)
..+..+.+|+.... ..+..+..|...|.+++|+|++++|++++.|+.|+|||
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d 275 (425)
T 1r5m_A 199 AENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEK---TPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWH 275 (425)
T ss_dssp -------CCCBSCCEEEETTEEEEECGGGCEEEEETTCS---SCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEC
T ss_pred eccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCC---ceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEE
Confidence 01122344444443 44566778999999999999999999999999999999
Q ss_pred CCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 584 TESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 584 l~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
+++++++..+.+|...|++++|+|++ +|++++.|+.|+|||+++++++..+..+... +.+++|+|+
T Consensus 276 ~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-----i~~~~~s~~ 341 (425)
T 1r5m_A 276 GGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVP-----IFAGRISQD 341 (425)
T ss_dssp SSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCC-----EEEEEECTT
T ss_pred CCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCcc-----EEEEEEcCC
Confidence 99999999999999999999999999 9999999999999999999999988877553 456777774
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.69 E-value=6.1e-16 Score=159.03 Aligned_cols=179 Identities=16% Similarity=0.170 Sum_probs=133.6
Q ss_pred CCceeccCCCCceEEEEecCCCCc--------ccccCcccCCCCcEEEeccCCCcEEEEecCCCCCC-------------
Q 006229 471 RPTLQHNGASSKSLLMFGSDGMGS--------LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADP------------- 529 (655)
Q Consensus 471 ~~~~~~s~S~d~s~l~ws~dg~~~--------lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~------------- 529 (655)
+...+++++.++.+.+|+...... -.+....+.+.+.+|++++.|++|++|+..++...
T Consensus 43 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~ 122 (369)
T 3zwl_B 43 EGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVE 122 (369)
T ss_dssp TSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEE
T ss_pred CCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEE
Confidence 445677777888888998754221 11223345666788999999999999987665410
Q ss_pred ------------CC-----ccccccccCCCcee--------eeEEeecCCCC--CeeEEEEcCCCCEEEEEeCCCcEEEE
Q 006229 530 ------------RD-----RVGRSAEVGKGFTF--------TEFQLIPASTS--KVESCHFSPDGKLLATGGHDKKAVLW 582 (655)
Q Consensus 530 ------------~d-----~~~~l~d~~~~~t~--------~~v~~l~gH~~--~V~sl~fSpdG~lLaSgs~DgtVrIW 582 (655)
.+ ..+.+|+....... ..+..+..|.. .|.+++|+|++++|++++.|+.|++|
T Consensus 123 ~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~ 202 (369)
T 3zwl_B 123 FSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKY 202 (369)
T ss_dssp ECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEE
T ss_pred EccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEE
Confidence 01 33344444332211 13344556666 89999999999999999999999999
Q ss_pred eCCC-CeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 583 CTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 583 Dl~t-~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
|+++ .+.+..+.+|...|++++|+|++.+|++++.|+.|+|||+++++++..+.... .+..++|+|+
T Consensus 203 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~------~~~~~~~~~~ 270 (369)
T 3zwl_B 203 DVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDC------PLNTAVITPL 270 (369)
T ss_dssp ETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSS------CEEEEEECSS
T ss_pred ECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCC------CceeEEecCC
Confidence 9998 78999999999999999999999999999999999999999999998887332 3446666664
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-16 Score=179.95 Aligned_cols=171 Identities=9% Similarity=0.038 Sum_probs=117.7
Q ss_pred ceeccCCCCceEEEEecCCCCc-------cc-----ccCcccCC------CCcEEEeccCCCcEEEEecCCCCCCCCccc
Q 006229 473 TLQHNGASSKSLLMFGSDGMGS-------LT-----SAPNQLTD------MDRFVDDGSLDDNVESFLSPDDADPRDRVG 534 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~~-------la-----sss~~l~~------~~~~LasGS~D~tV~vW~s~d~~d~~d~~~ 534 (655)
..+.+++.|+++.+|+.++... +. +....+.+ ...+|++|+.|++|++|+...+........
T Consensus 174 ~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~ 253 (524)
T 2j04_B 174 EMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFK 253 (524)
T ss_dssp --------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEE
T ss_pred hhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccce
Confidence 3456667778888887754321 01 11112232 246899999999999998765421100000
Q ss_pred cccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC-eEEEEecccCCCEEEE--EEcCCC-C
Q 006229 535 RSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDV--RFSPSL-S 610 (655)
Q Consensus 535 ~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~-~~l~tl~gH~~~ItsV--afsPdg-~ 610 (655)
. .......+.+|...|+||+|++++ .|++|+.|++|+|||++++ .++.++.+|...|++| +|+|++ .
T Consensus 254 ---~-----~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~ 324 (524)
T 2j04_B 254 ---M-----CEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDT 324 (524)
T ss_dssp ---C-----CCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCC
T ss_pred ---e-----ecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCe
Confidence 0 012335678999999999999864 8999999999999999976 4456789999999999 578887 8
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 611 RLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 611 ~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
+|||||.|++|||||+++++++.++.+|... ..|.+++|+|+
T Consensus 325 ~laS~S~D~tvklWD~~~~~~~~~~~~~~~~---~~v~~v~fsp~ 366 (524)
T 2j04_B 325 VVSTVAVDGYFYIFNPKDIATTKTTVSRFRG---SNLVPVVYCPQ 366 (524)
T ss_dssp EEEEEETTSEEEEECGGGHHHHCEEEEECSC---CSCCCEEEETT
T ss_pred EEEEeccCCeEEEEECCCCCccccccccccc---CcccceEeCCC
Confidence 9999999999999999998887777655421 12567888884
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.68 E-value=9.3e-17 Score=172.01 Aligned_cols=120 Identities=13% Similarity=0.100 Sum_probs=98.3
Q ss_pred CCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcC--------CCCEEEEEe
Q 006229 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--------DGKLLATGG 574 (655)
Q Consensus 503 ~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSp--------dG~lLaSgs 574 (655)
.....++++|+.|++|++|+...+ .......+..+.+|.+.|.+|+|+| |+++|||||
T Consensus 98 ~~~~~~las~~~d~~v~lw~~~~~--------------~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s 163 (393)
T 4gq1_A 98 PVYSLFLACVCQDNTVRLIITKNE--------------TIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVG 163 (393)
T ss_dssp CEEEEEEEEEETTSCEEEEEEETT--------------EEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEE
T ss_pred CCCCCEEEEEeCCCcEEEEECCCC--------------ccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEE
Confidence 344468999999999999965544 1112234567889999999999998 899999999
Q ss_pred CCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeEEEEEe
Q 006229 575 HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENVRKLTFIC 636 (655)
Q Consensus 575 ~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~-~LaSgS~DgtVrVWDl~tg~~v~~l~ 636 (655)
.|++|||||++++.++..+.+|...|++|+|+|++. +|++|+.|++|+|||++++.....+.
T Consensus 164 ~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~ 226 (393)
T 4gq1_A 164 DDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENS 226 (393)
T ss_dssp TTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC------
T ss_pred CCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCccccccc
Confidence 999999999999988888999999999999999874 79999999999999999887665543
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.5e-16 Score=170.89 Aligned_cols=154 Identities=17% Similarity=0.160 Sum_probs=123.0
Q ss_pred CCCCce-eccCCCCceEEEEecC--CCCcc----------cccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCcccc
Q 006229 469 ISRPTL-QHNGASSKSLLMFGSD--GMGSL----------TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGR 535 (655)
Q Consensus 469 ~s~~~~-~~s~S~d~s~l~ws~d--g~~~l----------asss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~ 535 (655)
.++... .++++.++.+.+|+.. ....+ .+....+.+.+.+|++|+.|+.|.+|...++....
T Consensus 111 s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~----- 185 (450)
T 2vdu_B 111 TSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEK----- 185 (450)
T ss_dssp CTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSS-----
T ss_pred cCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCccccc-----
Confidence 344455 4778889999999987 32111 11233556777899999999999999655442100
Q ss_pred ccccCCCceeeeEEeecCCCCCeeEEEEcCC---CCEEEEEeCCCcEEEEeCCCCeEEEE-ecccCCCEEEEEEcCCCCE
Q 006229 536 SAEVGKGFTFTEFQLIPASTSKVESCHFSPD---GKLLATGGHDKKAVLWCTESFTVKST-LEEHTQWITDVRFSPSLSR 611 (655)
Q Consensus 536 l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpd---G~lLaSgs~DgtVrIWDl~t~~~l~t-l~gH~~~ItsVafsPdg~~ 611 (655)
.++..+.+|...|.+|+|+|+ +++|++|+.|++|+|||+++++++.. +.+|...|++++|+ ++.+
T Consensus 186 ----------~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~ 254 (450)
T 2vdu_B 186 ----------FTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYL 254 (450)
T ss_dssp ----------CCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTE
T ss_pred ----------ccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCE
Confidence 023356689999999999999 99999999999999999999988877 56999999999999 9999
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEEecc
Q 006229 612 LATSSADRTVRVWDTENVRKLTFICCY 638 (655)
Q Consensus 612 LaSgS~DgtVrVWDl~tg~~v~~l~~~ 638 (655)
|++|+.|++|+|||+++++++..+..+
T Consensus 255 l~s~~~d~~v~vwd~~~~~~~~~~~~~ 281 (450)
T 2vdu_B 255 LLSAGGDDKIFAWDWKTGKNLSTFDYN 281 (450)
T ss_dssp EEEEESSSEEEEEETTTCCEEEEEECH
T ss_pred EEEEeCCCeEEEEECCCCcEeeeecch
Confidence 999999999999999999999888754
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=7.3e-16 Score=158.40 Aligned_cols=159 Identities=20% Similarity=0.270 Sum_probs=124.3
Q ss_pred CceeccCCCCceEEEEecCCCCcc----------cccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCC
Q 006229 472 PTLQHNGASSKSLLMFGSDGMGSL----------TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGK 541 (655)
Q Consensus 472 ~~~~~s~S~d~s~l~ws~dg~~~l----------asss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~ 541 (655)
...+.+++.++.+.+|+.+..+.. .+....+.+.+.+|++|+.|++|++|+...+
T Consensus 54 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~--------------- 118 (368)
T 3mmy_A 54 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSN--------------- 118 (368)
T ss_dssp SEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT---------------
T ss_pred ceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCC---------------
Confidence 367888888999999998752211 1223355667789999999999999966544
Q ss_pred CceeeeEEeecCCCCCeeEEEE--cCCCCEEEEEeCCCcEEEEeCCCCeEEE----------------------------
Q 006229 542 GFTFTEFQLIPASTSKVESCHF--SPDGKLLATGGHDKKAVLWCTESFTVKS---------------------------- 591 (655)
Q Consensus 542 ~~t~~~v~~l~gH~~~V~sl~f--SpdG~lLaSgs~DgtVrIWDl~t~~~l~---------------------------- 591 (655)
.. ..+.+|...|.+++| ++++++|++++.|++|++||+++++++.
T Consensus 119 ----~~-~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 193 (368)
T 3mmy_A 119 ----QA-IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLI 193 (368)
T ss_dssp ----EE-EEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEE
T ss_pred ----Cc-eeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEE
Confidence 12 234579999999999 8899999999999999999987654322
Q ss_pred --------------------------------------------------------------EecccCC-----------
Q 006229 592 --------------------------------------------------------------TLEEHTQ----------- 598 (655)
Q Consensus 592 --------------------------------------------------------------tl~gH~~----------- 598 (655)
.+.+|..
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (368)
T 3mmy_A 194 VYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDI 273 (368)
T ss_dssp EEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEE
T ss_pred EEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccc
Confidence 2233443
Q ss_pred -CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 599 -WITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 599 -~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
.|++++|+|++.+|++|+.||.|+|||+++++++..+..|.. .|.+++|+|+
T Consensus 274 ~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----~v~~~~~s~~ 326 (368)
T 3mmy_A 274 YAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQ-----PISACCFNHN 326 (368)
T ss_dssp CCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSS-----CEEEEEECTT
T ss_pred cceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCC-----CceEEEECCC
Confidence 699999999999999999999999999999999998887654 4567888885
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.68 E-value=4.3e-16 Score=163.82 Aligned_cols=147 Identities=15% Similarity=0.146 Sum_probs=122.5
Q ss_pred CceeccCCCCceEEEEecCCCCcc----------cccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCC
Q 006229 472 PTLQHNGASSKSLLMFGSDGMGSL----------TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGK 541 (655)
Q Consensus 472 ~~~~~s~S~d~s~l~ws~dg~~~l----------asss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~ 541 (655)
...+.+++.++.+.+|+..+.... .+....+.+.+.++++|+.|+.|++|+.. +
T Consensus 131 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~--------------- 194 (383)
T 3ei3_B 131 TNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-G--------------- 194 (383)
T ss_dssp EEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-S---------------
T ss_pred CCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-C---------------
Confidence 357778888999999998863211 12233456677899999999999999652 1
Q ss_pred CceeeeEEeecCCCCCeeEEEEcCCCC-EEEEEeCCCcEEEEeCCC----CeEEEEecccCCCEEEEEEcC-CCCEEEEE
Q 006229 542 GFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTES----FTVKSTLEEHTQWITDVRFSP-SLSRLATS 615 (655)
Q Consensus 542 ~~t~~~v~~l~gH~~~V~sl~fSpdG~-lLaSgs~DgtVrIWDl~t----~~~l~tl~gH~~~ItsVafsP-dg~~LaSg 615 (655)
.++..+.+|...|.+|+|+|+++ +|++|+.|++|+|||+++ +.++..+ +|...|++|+|+| ++.+|+++
T Consensus 195 ----~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~ 269 (383)
T 3ei3_B 195 ----HEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTT 269 (383)
T ss_dssp ----CEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEE
T ss_pred ----CEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEE
Confidence 35677789999999999999999 999999999999999987 6677777 7999999999999 99999999
Q ss_pred eCCCcEEEEECCCCeEEEEEeccc
Q 006229 616 SADRTVRVWDTENVRKLTFICCYK 639 (655)
Q Consensus 616 S~DgtVrVWDl~tg~~v~~l~~~~ 639 (655)
+.|++|+|||+++++++..+..+.
T Consensus 270 ~~d~~i~iwd~~~~~~~~~~~~~~ 293 (383)
T 3ei3_B 270 DQRNEIRVYSSYDWSKPDQIIIHP 293 (383)
T ss_dssp ESSSEEEEEETTBTTSCSEEEECC
T ss_pred cCCCcEEEEECCCCcccccccccc
Confidence 999999999999998887777554
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.2e-15 Score=157.72 Aligned_cols=140 Identities=18% Similarity=0.203 Sum_probs=114.7
Q ss_pred CCCCceEEEEecCCCCcccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCC
Q 006229 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK 557 (655)
Q Consensus 478 ~S~d~s~l~ws~dg~~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~ 557 (655)
......++.|++++. +|++|+.|++|++|+.... +...+..+.+|...
T Consensus 10 h~~~v~~~~~s~~~~---------------~l~~~~~dg~i~iw~~~~~-----------------~~~~~~~~~~h~~~ 57 (379)
T 3jrp_A 10 HNELIHDAVLDYYGK---------------RLATCSSDKTIKIFEVEGE-----------------THKLIDTLTGHEGP 57 (379)
T ss_dssp CCCCEEEEEECSSSS---------------EEEEEETTSCEEEEEEETT-----------------EEEEEEEECCCSSC
T ss_pred CcccEEEEEEcCCCC---------------EEEEEECCCcEEEEecCCC-----------------cceeeeEecCCCCc
Confidence 344566777777554 8899999999999965322 23567788899999
Q ss_pred eeEEEEcCC--CCEEEEEeCCCcEEEEeCCCCe--EEEEecccCCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCeE
Q 006229 558 VESCHFSPD--GKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENVRK 631 (655)
Q Consensus 558 V~sl~fSpd--G~lLaSgs~DgtVrIWDl~t~~--~l~tl~gH~~~ItsVafsPd--g~~LaSgS~DgtVrVWDl~tg~~ 631 (655)
|++++|+++ +++|++|+.|++|+|||+++++ .+..+.+|...|++|+|+|+ +.+|++++.|++|+|||++++..
T Consensus 58 v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~ 137 (379)
T 3jrp_A 58 VWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT 137 (379)
T ss_dssp EEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC
T ss_pred EEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc
Confidence 999999987 9999999999999999999987 78888899999999999999 99999999999999999998743
Q ss_pred --EEEEecccceeeeeceeeEEEec
Q 006229 632 --LTFICCYKCIFVSTAIGSCFFAP 654 (655)
Q Consensus 632 --v~~l~~~~~~v~s~~Vss~~F~P 654 (655)
...+..|.. .|.+++|+|
T Consensus 138 ~~~~~~~~~~~-----~v~~~~~~~ 157 (379)
T 3jrp_A 138 TSPIIIDAHAI-----GVNSASWAP 157 (379)
T ss_dssp CCEEEEECCTT-----CEEEEEECC
T ss_pred eeeEEecCCCC-----ceEEEEEcC
Confidence 334444543 355677776
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-15 Score=159.61 Aligned_cols=158 Identities=16% Similarity=0.264 Sum_probs=116.2
Q ss_pred CCceeccCCCCceEEEEecCCCCcc---------------------cccCcccCC-CCcEEEeccCCCcEEEEecCCCC-
Q 006229 471 RPTLQHNGASSKSLLMFGSDGMGSL---------------------TSAPNQLTD-MDRFVDDGSLDDNVESFLSPDDA- 527 (655)
Q Consensus 471 ~~~~~~s~S~d~s~l~ws~dg~~~l---------------------asss~~l~~-~~~~LasGS~D~tV~vW~s~d~~- 527 (655)
....+++++.++.+.+|+.+..... .+....+.+ ...++++++.|+.|++|+...+.
T Consensus 55 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 134 (408)
T 4a11_B 55 EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQT 134 (408)
T ss_dssp TCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCcc
Confidence 3456677777888888887652111 111223344 44678888888888888765442
Q ss_pred ---------------------------CCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCC-EEEEEeCCCcE
Q 006229 528 ---------------------------DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKA 579 (655)
Q Consensus 528 ---------------------------d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~-lLaSgs~DgtV 579 (655)
...+..+.+|+...+ ..+..+.+|...|.+++|+|+++ +|++|+.|+.|
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i 211 (408)
T 4a11_B 135 ADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG---SCSHILQGHRQEILAVSWSPRYDYILATASADSRV 211 (408)
T ss_dssp EEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSS---CCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCE
T ss_pred ceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCc---ceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcE
Confidence 011233455555544 45667789999999999999998 69999999999
Q ss_pred EEEeCCCCe-EEEEe---------------cccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE
Q 006229 580 VLWCTESFT-VKSTL---------------EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRK 631 (655)
Q Consensus 580 rIWDl~t~~-~l~tl---------------~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~ 631 (655)
++||++++. ++..+ .+|...|++++|+|++.+|++++.|+.|+|||+++++.
T Consensus 212 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 279 (408)
T 4a11_B 212 KLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGEN 279 (408)
T ss_dssp EEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCB
T ss_pred EEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCcc
Confidence 999998765 44444 57999999999999999999999999999999987543
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-15 Score=158.19 Aligned_cols=164 Identities=15% Similarity=0.212 Sum_probs=126.8
Q ss_pred CCCceeccCCCCceEEEEecCCCC----------cccccCcccCCC--CcEEEeccCCCcEEEEecCCCCCCCCcccccc
Q 006229 470 SRPTLQHNGASSKSLLMFGSDGMG----------SLTSAPNQLTDM--DRFVDDGSLDDNVESFLSPDDADPRDRVGRSA 537 (655)
Q Consensus 470 s~~~~~~s~S~d~s~l~ws~dg~~----------~lasss~~l~~~--~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~ 537 (655)
++...+++++.++.+.+|+.+... .-.+....+... +.+|++|+.|+.|++|+...+
T Consensus 21 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~----------- 89 (379)
T 3jrp_A 21 YYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG----------- 89 (379)
T ss_dssp SSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETT-----------
T ss_pred CCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCC-----------
Confidence 344677788889999999886311 111122233333 689999999999999965443
Q ss_pred ccCCCceeeeEEeecCCCCCeeEEEEcCC--CCEEEEEeCCCcEEEEeCCCC--eEEEEecccCCCEEEEEEcC------
Q 006229 538 EVGKGFTFTEFQLIPASTSKVESCHFSPD--GKLLATGGHDKKAVLWCTESF--TVKSTLEEHTQWITDVRFSP------ 607 (655)
Q Consensus 538 d~~~~~t~~~v~~l~gH~~~V~sl~fSpd--G~lLaSgs~DgtVrIWDl~t~--~~l~tl~gH~~~ItsVafsP------ 607 (655)
....+..+..|...|.+++|+|+ +.+|++++.|++|+|||+++. .....+.+|...|++++|+|
T Consensus 90 ------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 163 (379)
T 3jrp_A 90 ------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 163 (379)
T ss_dssp ------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----
T ss_pred ------ceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccc
Confidence 12466778889999999999999 999999999999999999887 34556789999999999999
Q ss_pred -------CCCEEEEEeCCCcEEEEECCCCe----EEEEEecccceeeeeceeeEEEecC
Q 006229 608 -------SLSRLATSSADRTVRVWDTENVR----KLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 608 -------dg~~LaSgS~DgtVrVWDl~tg~----~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
++.+|++++.|++|+|||++++. ++..+..|.. .|.+++|+|+
T Consensus 164 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~-----~v~~~~~sp~ 217 (379)
T 3jrp_A 164 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD-----WVRDVAWSPT 217 (379)
T ss_dssp ------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS-----CEEEEEECCC
T ss_pred ccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccC-----cEeEEEECCC
Confidence 69999999999999999998764 4455555544 3557788875
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.68 E-value=3.8e-16 Score=166.17 Aligned_cols=128 Identities=18% Similarity=0.222 Sum_probs=107.0
Q ss_pred EEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCCC
Q 006229 508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES 586 (655)
Q Consensus 508 ~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSp-dG~lLaSgs~DgtVrIWDl~t 586 (655)
++++++.|+.|++|+..... .....+..+.+|.+.|++++|+| ++++|++|+.|++|+|||+.+
T Consensus 49 ~~~~~~~~g~i~v~~~~~~~---------------~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~ 113 (402)
T 2aq5_A 49 LICEASGGGAFLVLPLGKTG---------------RVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPD 113 (402)
T ss_dssp EEBCCSSSCCEEEEETTCCE---------------ECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCT
T ss_pred EEEEEcCCCEEEEEECccCC---------------CCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccC
Confidence 45678899999999654321 01123445678999999999999 999999999999999999998
Q ss_pred C-------eEEEEecccCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeEEEEE--ecccceeeeeceeeEEEecC
Q 006229 587 F-------TVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENVRKLTFI--CCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 587 ~-------~~l~tl~gH~~~ItsVafsPdg-~~LaSgS~DgtVrVWDl~tg~~v~~l--~~~~~~v~s~~Vss~~F~P~ 655 (655)
+ +++..+.+|...|++|+|+|++ .+|++++.|++|+|||+++++++..+ ..|.. .|.+++|+|+
T Consensus 114 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~v~~~~~~~~ 187 (402)
T 2aq5_A 114 GGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPD-----TIYSVDWSRD 187 (402)
T ss_dssp TCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCS-----CEEEEEECTT
T ss_pred CCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCC-----ceEEEEECCC
Confidence 7 6788999999999999999998 69999999999999999999999888 55654 3557778774
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-15 Score=164.28 Aligned_cols=96 Identities=20% Similarity=0.326 Sum_probs=87.9
Q ss_pred eEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 006229 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (655)
Q Consensus 547 ~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl 626 (655)
.+..+.+|...|.++ ++++.+|++|+.|++|++||+++++++..+.+|...|++++|+|++.+|++|+.|++|+|||+
T Consensus 262 ~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~ 339 (464)
T 3v7d_B 262 FVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDL 339 (464)
T ss_dssp EEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred EEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Confidence 366788999998887 567999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEecccceeee
Q 006229 627 ENVRKLTFICCYKCIFVS 644 (655)
Q Consensus 627 ~tg~~v~~l~~~~~~v~s 644 (655)
++++++..+.+|...+.+
T Consensus 340 ~~~~~~~~~~~h~~~v~~ 357 (464)
T 3v7d_B 340 ENGELMYTLQGHTALVGL 357 (464)
T ss_dssp TTTEEEEEECCCSSCEEE
T ss_pred CCCcEEEEEeCCCCcEEE
Confidence 999999999888765543
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.2e-16 Score=185.77 Aligned_cols=169 Identities=10% Similarity=-0.020 Sum_probs=129.4
Q ss_pred CCCceeccCCCCceEEEEecCCCCc-------------------ccccCcccCCCCcEEEeccCCCcEEEEecCCCCCC-
Q 006229 470 SRPTLQHNGASSKSLLMFGSDGMGS-------------------LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADP- 529 (655)
Q Consensus 470 s~~~~~~s~S~d~s~l~ws~dg~~~-------------------lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~- 529 (655)
++..++++++.|+++.+|+...... ..+....|.+.+++|++|+.|++|++|+...+...
T Consensus 445 pdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~ 524 (902)
T 2oaj_A 445 EYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYS 524 (902)
T ss_dssp SEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC--
T ss_pred ccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccC
Confidence 4457889999999999999865311 12334467888899999999999999977554210
Q ss_pred -------CCccc---------------cccccCC---CceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 006229 530 -------RDRVG---------------RSAEVGK---GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (655)
Q Consensus 530 -------~d~~~---------------~l~d~~~---~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl 584 (655)
....+ .+..... ...+.++..+.+|.+.|++|+||||| +||+|+.|++|+|||+
T Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~ 603 (902)
T 2oaj_A 525 VENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDR 603 (902)
T ss_dssp -------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEET
T ss_pred ccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEEC
Confidence 00000 0000000 01245678889999999999999999 9999999999999999
Q ss_pred CCCeEEE-----Eec-ccCCCEEEEEEc-----CCC---CEEEEEeCCCcEEEEEC---CCCeEEEEEeccc
Q 006229 585 ESFTVKS-----TLE-EHTQWITDVRFS-----PSL---SRLATSSADRTVRVWDT---ENVRKLTFICCYK 639 (655)
Q Consensus 585 ~t~~~l~-----tl~-gH~~~ItsVafs-----Pdg---~~LaSgS~DgtVrVWDl---~tg~~v~~l~~~~ 639 (655)
++...+. .+. +|+..|++|+|+ ||| .+|++|+.|++|++||+ .+|+++..+.+|.
T Consensus 604 ~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~ 675 (902)
T 2oaj_A 604 RGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDIT 675 (902)
T ss_dssp TTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEE
T ss_pred CCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCce
Confidence 9887764 233 899999999999 885 89999999999999999 7899998888775
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.6e-15 Score=161.77 Aligned_cols=156 Identities=13% Similarity=0.172 Sum_probs=128.3
Q ss_pred eeccCCCCceEEEEecCCCCc---------ccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCce
Q 006229 474 LQHNGASSKSLLMFGSDGMGS---------LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFT 544 (655)
Q Consensus 474 ~~~s~S~d~s~l~ws~dg~~~---------lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t 544 (655)
.+.+++.++.+.+|+.+.... -.+....+.+.+.+|++|+.|+.|++|+..++
T Consensus 105 ~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~------------------ 166 (401)
T 4aez_A 105 NVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ------------------ 166 (401)
T ss_dssp SEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC------------------
T ss_pred CEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC------------------
Confidence 355666788999998875321 11223355667789999999999999966543
Q ss_pred eeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCC-CCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 006229 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE-SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623 (655)
Q Consensus 545 ~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~-t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrV 623 (655)
..+..+.+|...|.+++| ++++|++|+.|++|++||++ ....+..+.+|...|++++|+|++.+|++|+.|++|+|
T Consensus 167 -~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~i 243 (401)
T 4aez_A 167 -TKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQI 243 (401)
T ss_dssp -CEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred -eEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEE
Confidence 456777899999999999 46899999999999999998 56788899999999999999999999999999999999
Q ss_pred EECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 624 WDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 624 WDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
||++++.++..+..|... |.+++|+|+
T Consensus 244 wd~~~~~~~~~~~~~~~~-----v~~~~~~p~ 270 (401)
T 4aez_A 244 WDARSSIPKFTKTNHNAA-----VKAVAWCPW 270 (401)
T ss_dssp EETTCSSEEEEECCCSSC-----CCEEEECTT
T ss_pred ccCCCCCccEEecCCcce-----EEEEEECCC
Confidence 999999999888776543 557778773
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.2e-15 Score=154.59 Aligned_cols=152 Identities=22% Similarity=0.262 Sum_probs=108.6
Q ss_pred eeccCCCCceEEEEecCCCCcc---------cccCcccCCCCcEEEeccCCCcEEEEecCCCCC----------------
Q 006229 474 LQHNGASSKSLLMFGSDGMGSL---------TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDAD---------------- 528 (655)
Q Consensus 474 ~~~s~S~d~s~l~ws~dg~~~l---------asss~~l~~~~~~LasGS~D~tV~vW~s~d~~d---------------- 528 (655)
.+.+++.+.....|........ ......+...+.++++++.|++|++|+...+..
T Consensus 121 ~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~ 200 (318)
T 4ggc_A 121 ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVK 200 (318)
T ss_dssp EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEE
T ss_pred EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceE
Confidence 4455555556666555432111 111223455667888999999999997765431
Q ss_pred -----------------CCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEe--CCCcEEEEeCCCCeE
Q 006229 529 -----------------PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG--HDKKAVLWCTESFTV 589 (655)
Q Consensus 529 -----------------~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs--~DgtVrIWDl~t~~~ 589 (655)
..+..+++|+..... . .....+...|.++.|++++..+++++ .|++|+|||++++++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~---~-~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~ 276 (318)
T 4ggc_A 201 AVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA---C-LSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK 276 (318)
T ss_dssp EEEECTTSTTEEEEEECTTTCEEEEEETTTCC---E-EEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCE
T ss_pred EEEecCCCCcEEEEEecCCCCEEEEEeccccc---c-cccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcE
Confidence 111223444443331 1 22234667899999999999877765 799999999999999
Q ss_pred EEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 006229 590 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENV 629 (655)
Q Consensus 590 l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg 629 (655)
+.++.+|.+.|++|+|+|++.+|+|||.|++|||||+.+.
T Consensus 277 ~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 277 VAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp EEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred EEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 9999999999999999999999999999999999999764
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.67 E-value=8.3e-16 Score=166.22 Aligned_cols=139 Identities=12% Similarity=0.082 Sum_probs=108.2
Q ss_pred CCceEEEEecCCCCcccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCee
Q 006229 480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE 559 (655)
Q Consensus 480 ~d~s~l~ws~dg~~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~ 559 (655)
...+++.|+|... .+|++|+.|++|++|+...+. ...+..+.+|.+.|+
T Consensus 120 ~~V~~l~~~P~~~--------------~~lasGs~dg~i~lWd~~~~~-----------------~~~~~~~~gH~~~V~ 168 (435)
T 4e54_B 120 RRATSLAWHPTHP--------------STVAVGSKGGDIMLWNFGIKD-----------------KPTFIKGIGAGGSIT 168 (435)
T ss_dssp SCEEEEEECSSCT--------------TCEEEEETTSCEEEECSSCCS-----------------CCEEECCCSSSCCCC
T ss_pred CCEEEEEEeCCCC--------------CEEEEEeCCCEEEEEECCCCC-----------------ceeEEEccCCCCCEE
Confidence 3467788877443 589999999999999654431 123445678999999
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEeCCCCeEEEEecc--cCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEe
Q 006229 560 SCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEE--HTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFIC 636 (655)
Q Consensus 560 sl~fSp-dG~lLaSgs~DgtVrIWDl~t~~~l~tl~g--H~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~ 636 (655)
+|+|+| ++.+|+||+.|++|+|||+++......... +...|.+++|+|++.+|++|+.||+|+|||++. +++..+.
T Consensus 169 ~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~ 247 (435)
T 4e54_B 169 GLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLR 247 (435)
T ss_dssp EEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSB
T ss_pred EEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEe
Confidence 999998 789999999999999999987655444433 345688999999999999999999999999974 5566666
Q ss_pred cccceeeeeceeeEEEecC
Q 006229 637 CYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 637 ~~~~~v~s~~Vss~~F~P~ 655 (655)
+|... |.+++|+|+
T Consensus 248 ~h~~~-----v~~v~~~p~ 261 (435)
T 4e54_B 248 MHKKK-----VTHVALNPC 261 (435)
T ss_dssp CCSSC-----EEEEEECTT
T ss_pred cccce-----EEeeeecCC
Confidence 66543 456777774
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-15 Score=164.15 Aligned_cols=162 Identities=21% Similarity=0.239 Sum_probs=115.9
Q ss_pred ceeccCCCCceEEEEecCCCCcc---------cccCcccCCCCcEEEeccCCCcEEEEecCCCC----------------
Q 006229 473 TLQHNGASSKSLLMFGSDGMGSL---------TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDA---------------- 527 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~~l---------asss~~l~~~~~~LasGS~D~tV~vW~s~d~~---------------- 527 (655)
..+.+++.+..+..|+....... .+....+.+.+.++++++.|+.|++|+...+.
T Consensus 200 ~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V 279 (420)
T 4gga_A 200 YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAV 279 (420)
T ss_dssp TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCE
T ss_pred CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCce
Confidence 45666667777777765542211 11122345556778888888888888655432
Q ss_pred -----------------CCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEe--CCCcEEEEeCCCCe
Q 006229 528 -----------------DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG--HDKKAVLWCTESFT 588 (655)
Q Consensus 528 -----------------d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs--~DgtVrIWDl~t~~ 588 (655)
...|..+++|++.++ .++..+..| ..|.++.|+++++.|++++ .|++|+|||+.+++
T Consensus 280 ~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~---~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~ 355 (420)
T 4gga_A 280 KAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG---ACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA 355 (420)
T ss_dssp EEEEECTTCTTEEEEEECTTTCEEEEEETTTT---EEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC
T ss_pred eeeeeCCCcccEEEEEeecCCCEEEEEeCCcc---ccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCc
Confidence 112344566666655 444455444 5689999999999888765 79999999999999
Q ss_pred EEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecc
Q 006229 589 VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCY 638 (655)
Q Consensus 589 ~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~ 638 (655)
++.+|.+|.+.|++|+|+|+|.+|+|||.|++|||||+.+..+......+
T Consensus 356 ~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~ 405 (420)
T 4gga_A 356 KVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRRERE 405 (420)
T ss_dssp EEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC------
T ss_pred EEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhc
Confidence 99999999999999999999999999999999999999877665554433
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.5e-15 Score=154.33 Aligned_cols=134 Identities=22% Similarity=0.306 Sum_probs=112.4
Q ss_pred cCCCCceEEEEecCCCCcccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCC
Q 006229 477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS 556 (655)
Q Consensus 477 s~S~d~s~l~ws~dg~~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~ 556 (655)
.......++.|+++.. .+.+|++|+.|+.|++|+..+.. ......+.+|..
T Consensus 37 ~h~~~v~~~~~~~~~~------------~g~~l~~~~~dg~i~iw~~~~~~-----------------~~~~~~~~~h~~ 87 (368)
T 3mmy_A 37 SPDDSIGCLSFSPPTL------------PGNFLIAGSWANDVRCWEVQDSG-----------------QTIPKAQQMHTG 87 (368)
T ss_dssp CCSSCEEEEEECCTTS------------SSEEEEEEETTSEEEEEEECTTS-----------------CEEEEEEEECSS
T ss_pred CCCCceEEEEEcCCCC------------CceEEEEECCCCcEEEEEcCCCC-----------------ceeEEEeccccC
Confidence 3445677888888641 02589999999999999765421 123366778999
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEE--cCCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 006229 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF--SPSLSRLATSSADRTVRVWDTENVRKLTF 634 (655)
Q Consensus 557 ~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVaf--sPdg~~LaSgS~DgtVrVWDl~tg~~v~~ 634 (655)
.|.+|+|+|++++|++|+.|++|+|||+++++++. +.+|...|++++| +|++.+|++++.|++|+|||+++++++..
T Consensus 88 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 166 (368)
T 3mmy_A 88 PVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMV 166 (368)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEE
T ss_pred CEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEE
Confidence 99999999999999999999999999999998876 5679999999999 89999999999999999999999999888
Q ss_pred Eecccc
Q 006229 635 ICCYKC 640 (655)
Q Consensus 635 l~~~~~ 640 (655)
+..+..
T Consensus 167 ~~~~~~ 172 (368)
T 3mmy_A 167 LQLPER 172 (368)
T ss_dssp EECSSC
T ss_pred EecCCC
Confidence 877654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.5e-15 Score=175.23 Aligned_cols=138 Identities=17% Similarity=0.212 Sum_probs=119.3
Q ss_pred CCCCceEEEEecCCCCcccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCC
Q 006229 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK 557 (655)
Q Consensus 478 ~S~d~s~l~ws~dg~~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~ 557 (655)
.+....++.|+|++. +|++|+.|++|++|+..++ ..+..+.+|...
T Consensus 12 h~~~v~~i~~sp~~~---------------~la~~~~~g~v~iwd~~~~-------------------~~~~~~~~~~~~ 57 (814)
T 3mkq_A 12 RSDRVKGIDFHPTEP---------------WVLTTLYSGRVEIWNYETQ-------------------VEVRSIQVTETP 57 (814)
T ss_dssp ECSCEEEEEECSSSS---------------EEEEEETTSEEEEEETTTT-------------------EEEEEEECCSSC
T ss_pred CCCceEEEEECCCCC---------------EEEEEeCCCEEEEEECCCC-------------------ceEEEEecCCCc
Confidence 344567777777654 8899999999999976544 467778899999
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eEEEEEe
Q 006229 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENV-RKLTFIC 636 (655)
Q Consensus 558 V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg-~~v~~l~ 636 (655)
|.+++|+|++++|++|+.|++|+|||+.+++.+.++.+|...|++++|+|++.+|++++.|++|+|||++++ .+...+.
T Consensus 58 v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 137 (814)
T 3mkq_A 58 VRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE 137 (814)
T ss_dssp EEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987 6677777
Q ss_pred cccceeeeeceeeEEEec
Q 006229 637 CYKCIFVSTAIGSCFFAP 654 (655)
Q Consensus 637 ~~~~~v~s~~Vss~~F~P 654 (655)
.|... |.+++|+|
T Consensus 138 ~~~~~-----v~~~~~~p 150 (814)
T 3mkq_A 138 GHEHF-----VMCVAFNP 150 (814)
T ss_dssp CCSSC-----EEEEEEET
T ss_pred CCCCc-----EEEEEEEc
Confidence 77654 44667776
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.66 E-value=3.9e-15 Score=160.58 Aligned_cols=158 Identities=16% Similarity=0.241 Sum_probs=126.9
Q ss_pred eeccCCCCceEEEEecCCCCcc--------cccCcccC--CCCcEEEeccCCCcEEEEecCCCCC---------------
Q 006229 474 LQHNGASSKSLLMFGSDGMGSL--------TSAPNQLT--DMDRFVDDGSLDDNVESFLSPDDAD--------------- 528 (655)
Q Consensus 474 ~~~s~S~d~s~l~ws~dg~~~l--------asss~~l~--~~~~~LasGS~D~tV~vW~s~d~~d--------------- 528 (655)
.+.+++.++.+.+|+.+....+ .+....+. +.+.++++|+.|++|++|+......
T Consensus 175 ~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 254 (464)
T 3v7d_B 175 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH 254 (464)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEES
T ss_pred EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEee
Confidence 6778888999999998753211 11111222 3457899999999999997765431
Q ss_pred --------------------------------CCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCC
Q 006229 529 --------------------------------PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD 576 (655)
Q Consensus 529 --------------------------------~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~D 576 (655)
..+..+++|+..++ +++..+.+|...|.+++|+|++++|++|+.|
T Consensus 255 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~d 331 (464)
T 3v7d_B 255 TPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQM---KCLYILSGHTDRIYSTIYDHERKRCISASMD 331 (464)
T ss_dssp CGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEEETTTTEEEEEETT
T ss_pred ccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCC---cEEEEecCCCCCEEEEEEcCCCCEEEEEeCC
Confidence 12344567776654 6677888999999999999999999999999
Q ss_pred CcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEe
Q 006229 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFIC 636 (655)
Q Consensus 577 gtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~ 636 (655)
++|+|||+++++++.++.+|...|++++|+ +.+|++++.||+|+|||++++.....+.
T Consensus 332 g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~ 389 (464)
T 3v7d_B 332 TTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH 389 (464)
T ss_dssp SCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred CcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec
Confidence 999999999999999999999999999997 5899999999999999999988776654
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.66 E-value=1e-15 Score=161.35 Aligned_cols=160 Identities=14% Similarity=0.191 Sum_probs=126.8
Q ss_pred CceeccCCCCceEEEEecCCCC------ccc-----------ccCcccCCC-CcEEEeccCCCcEEEEecCCCCCCCCcc
Q 006229 472 PTLQHNGASSKSLLMFGSDGMG------SLT-----------SAPNQLTDM-DRFVDDGSLDDNVESFLSPDDADPRDRV 533 (655)
Q Consensus 472 ~~~~~s~S~d~s~l~ws~dg~~------~la-----------sss~~l~~~-~~~LasGS~D~tV~vW~s~d~~d~~d~~ 533 (655)
...+.+++.++.+.+|+..... ... +....+.+. ..++++++.|+.|++|+...+
T Consensus 126 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~------- 198 (416)
T 2pm9_A 126 DNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAK------- 198 (416)
T ss_dssp TTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTT-------
T ss_pred CCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCC-------
Confidence 4567777788888888886543 110 111233444 578999999999999976544
Q ss_pred ccccccCCCceeeeEEeecCC------CCCeeEEEEcCCC-CEEEEEeCCC---cEEEEeCCCC-eEEEEec-ccCCCEE
Q 006229 534 GRSAEVGKGFTFTEFQLIPAS------TSKVESCHFSPDG-KLLATGGHDK---KAVLWCTESF-TVKSTLE-EHTQWIT 601 (655)
Q Consensus 534 ~~l~d~~~~~t~~~v~~l~gH------~~~V~sl~fSpdG-~lLaSgs~Dg---tVrIWDl~t~-~~l~tl~-gH~~~It 601 (655)
+.+..+..| ...|.+++|+|++ .+|++++.|+ +|++||++++ .++..+. +|...|+
T Consensus 199 ------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~ 266 (416)
T 2pm9_A 199 ------------KEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGIL 266 (416)
T ss_dssp ------------EEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEE
T ss_pred ------------CcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCcee
Confidence 334444444 7899999999987 6999999999 9999999986 6777888 9999999
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 602 DVRFSP-SLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 602 sVafsP-dg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
+|+|+| ++.+|++++.|++|+|||+++++++..+..|... |.+++|+|+
T Consensus 267 ~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~-----v~~~~~s~~ 316 (416)
T 2pm9_A 267 SLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNW-----CFKTKFAPE 316 (416)
T ss_dssp EEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSC-----CCCEEECTT
T ss_pred EEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCc-----eEEEEECCC
Confidence 999999 9999999999999999999999999999887653 457788874
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.5e-15 Score=162.15 Aligned_cols=128 Identities=9% Similarity=0.012 Sum_probs=101.0
Q ss_pred CCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCC---CCeeEEEEcCCCCEE---------
Q 006229 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST---SKVESCHFSPDGKLL--------- 570 (655)
Q Consensus 503 ~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~---~~V~sl~fSpdG~lL--------- 570 (655)
.+...+|++||.|++|++|+..++ ++++++.+|. ..|.+++|+|||+++
T Consensus 190 ~g~~~~LaSgS~D~TIkIWDl~TG-------------------k~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~ 250 (356)
T 2w18_A 190 QGMQEALLGTTIMNNIVIWNLKTG-------------------QLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAK 250 (356)
T ss_dssp ETSTTEEEEEETTSEEEEEETTTC-------------------CEEEEEECCC---CCCEEEEEEETTEEEEEEC-----
T ss_pred CCCCceEEEecCCCcEEEEECCCC-------------------cEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCc
Confidence 446689999999999999977665 4566666543 467888999999976
Q ss_pred ---EEEeCCCcEEEEeCCCCeEEEEe-----cccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEeccccee
Q 006229 571 ---ATGGHDKKAVLWCTESFTVKSTL-----EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIF 642 (655)
Q Consensus 571 ---aSgs~DgtVrIWDl~t~~~l~tl-----~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v 642 (655)
++|+.|++|++||..+++++.++ .+|...+.+.+++ +.++++++.|++|||||+.+++++.++.+|...+
T Consensus 251 w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~v 328 (356)
T 2w18_A 251 ESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQH 328 (356)
T ss_dssp -------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CC
T ss_pred ceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCe
Confidence 66889999999999999988776 4888777666665 8899999999999999999999999998776433
Q ss_pred eeeceeeEEEecC
Q 006229 643 VSTAIGSCFFAPT 655 (655)
Q Consensus 643 ~s~~Vss~~F~P~ 655 (655)
+.+++|+||
T Consensus 329 ----vs~vafSPD 337 (356)
T 2w18_A 329 ----WSFVKWSGT 337 (356)
T ss_dssp ----CCEEEECSS
T ss_pred ----EEEEEECCC
Confidence 345789986
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.9e-15 Score=151.03 Aligned_cols=156 Identities=16% Similarity=0.164 Sum_probs=123.6
Q ss_pred CceeccCCCCceEEEEecCCCC------cccccCcccCC-CCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCce
Q 006229 472 PTLQHNGASSKSLLMFGSDGMG------SLTSAPNQLTD-MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFT 544 (655)
Q Consensus 472 ~~~~~s~S~d~s~l~ws~dg~~------~lasss~~l~~-~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t 544 (655)
...+.+++.++.+.+|+..... ...+....+.+ .+.++++++.|+.|++|+.
T Consensus 114 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~--------------------- 172 (313)
T 3odt_A 114 DGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQN--------------------- 172 (313)
T ss_dssp TTEEEEEETTSEEEEEETTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEET---------------------
T ss_pred CCEEEEEeCCCCEEEEcCCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEec---------------------
Confidence 3467777888899999832210 00111112222 5678899999999999951
Q ss_pred eeeEEeecC-CCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 006229 545 FTEFQLIPA-STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV 623 (655)
Q Consensus 545 ~~~v~~l~g-H~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrV 623 (655)
...+..+.. |...|.+++|+|++. |++++.|+.|++||+++++++..+.+|...|++++|+|++ .|++++.|++|+|
T Consensus 173 ~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~i 250 (313)
T 3odt_A 173 DKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRI 250 (313)
T ss_dssp TEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEE
T ss_pred CceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEE
Confidence 134455556 889999999999998 9999999999999999999999999999999999999999 6999999999999
Q ss_pred EECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 624 WDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 624 WDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
||+++++++..+..+... |.+++|+|+
T Consensus 251 wd~~~~~~~~~~~~~~~~-----i~~~~~~~~ 277 (313)
T 3odt_A 251 WSKENGSLKQVITLPAIS-----IWSVDCMSN 277 (313)
T ss_dssp ECTTTCCEEEEEECSSSC-----EEEEEECTT
T ss_pred EECCCCceeEEEeccCce-----EEEEEEccC
Confidence 999999999999887643 557778775
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.66 E-value=1e-15 Score=182.34 Aligned_cols=139 Identities=12% Similarity=0.041 Sum_probs=106.9
Q ss_pred ccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEee-----cCCCCCeeEEEEcCCCCEEEEEeC
Q 006229 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI-----PASTSKVESCHFSPDGKLLATGGH 575 (655)
Q Consensus 501 ~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l-----~gH~~~V~sl~fSpdG~lLaSgs~ 575 (655)
.+.+.+++|++|+.|++|++|+...+... ..+ . +. + .+ .+|...|.+|+|+|||++||+|+.
T Consensus 442 ~~spdg~~laSgs~DgtVrlWd~~~g~~~---~~~------~--~~-~-~l~~~~~~~h~~~V~svafspdg~~LAsgs~ 508 (902)
T 2oaj_A 442 LPAEYGTAFITGHSNGSVRIYDASHGDIQ---DNA------S--FE-V-NLSRTLNKAKELAVDKISFAAETLELAVSIE 508 (902)
T ss_dssp CCCSEEEEEEEEETTSEEEEEESSCCTTT---TTB------C--EE-E-EHHHHTTCSSSCCEEEEEEETTTTEEEEEET
T ss_pred cccccCcEEEEecCCCcEEEEECCCcccc---CCc------e--EE-e-echhhcCCCCCCceeEEEecCCCCeEEEEec
Confidence 44556689999999999999987665210 000 0 00 0 11 289999999999999999999999
Q ss_pred CCcEEEEeCCCC---------------------------------------------eEEEEecccCCCEEEEEEcCCCC
Q 006229 576 DKKAVLWCTESF---------------------------------------------TVKSTLEEHTQWITDVRFSPSLS 610 (655)
Q Consensus 576 DgtVrIWDl~t~---------------------------------------------~~l~tl~gH~~~ItsVafsPdg~ 610 (655)
|++|+|||+.++ +++.++.+|.+.|++|+|+|||
T Consensus 509 DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG- 587 (902)
T 2oaj_A 509 TGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG- 587 (902)
T ss_dssp TSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-
T ss_pred CcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-
Confidence 999999999765 3578889999999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEEecccce-eeeeceeeEEEe
Q 006229 611 RLATSSADRTVRVWDTENVRKLTFICCYKCI-FVSTAIGSCFFA 653 (655)
Q Consensus 611 ~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~-v~s~~Vss~~F~ 653 (655)
+||+|+.|++|+|||++++..+....+..-. .+...|.+++|+
T Consensus 588 ~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs 631 (902)
T 2oaj_A 588 FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFV 631 (902)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEE
T ss_pred EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEE
Confidence 9999999999999999988876543321111 233446778887
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=2.6e-15 Score=161.84 Aligned_cols=170 Identities=18% Similarity=0.237 Sum_probs=135.8
Q ss_pred CceeccCCCCceEEEEecCCCCcc------cccCcccCCCCcEEEeccCCCcEEEEecCCCC------------------
Q 006229 472 PTLQHNGASSKSLLMFGSDGMGSL------TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDA------------------ 527 (655)
Q Consensus 472 ~~~~~s~S~d~s~l~ws~dg~~~l------asss~~l~~~~~~LasGS~D~tV~vW~s~d~~------------------ 527 (655)
...+.+++.++.+.+|+....... ......+...+.++++|+.|++|++|+..++.
T Consensus 143 ~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~ 222 (435)
T 1p22_A 143 DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN 222 (435)
T ss_dssp SSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC
T ss_pred CCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEECCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc
Confidence 456777888889999987642111 01111223356789999999999999876553
Q ss_pred ------CCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEE
Q 006229 528 ------DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWIT 601 (655)
Q Consensus 528 ------d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~It 601 (655)
.+.+..+++|+............+.+|...|.+++| ++++|++|+.|++|++||+++++++.++.+|...|+
T Consensus 223 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~ 300 (435)
T 1p22_A 223 NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIA 300 (435)
T ss_dssp TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEE
Confidence 123455678887776655566788899999999999 789999999999999999999999999999999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeee
Q 006229 602 DVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVST 645 (655)
Q Consensus 602 sVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~ 645 (655)
+++|+ +.+|++|+.|++|+|||+++++++..+..|...+.++
T Consensus 301 ~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~ 342 (435)
T 1p22_A 301 CLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI 342 (435)
T ss_dssp EEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred EEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEE
Confidence 99994 7899999999999999999999999999887765544
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.8e-15 Score=181.83 Aligned_cols=137 Identities=23% Similarity=0.367 Sum_probs=119.4
Q ss_pred CCceEEEEecCCCCcccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCee
Q 006229 480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE 559 (655)
Q Consensus 480 ~d~s~l~ws~dg~~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~ 559 (655)
....++.|++++ .++++|+.|++|++|+..++ ..+..+.+|...|.
T Consensus 616 ~~v~~~~~s~~~---------------~~l~s~~~d~~i~vw~~~~~-------------------~~~~~~~~h~~~v~ 661 (1249)
T 3sfz_A 616 DAVYHACFSQDG---------------QRIASCGADKTLQVFKAETG-------------------EKLLDIKAHEDEVL 661 (1249)
T ss_dssp SCEEEEEECTTS---------------SEEEEEETTSCEEEEETTTC-------------------CEEEEECCCSSCEE
T ss_pred ccEEEEEECCCC---------------CEEEEEeCCCeEEEEECCCC-------------------CEEEEeccCCCCEE
Confidence 445566666654 48899999999999976554 46777889999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCeEEEEEec
Q 006229 560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWDTENVRKLTFICC 637 (655)
Q Consensus 560 sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsP--dg~~LaSgS~DgtVrVWDl~tg~~v~~l~~ 637 (655)
+|+|+|+|++|++|+.|++|+|||+.+++++.++.+|...|++++|+| ++.++++|+.|++|+|||+++++++..+.+
T Consensus 662 ~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~ 741 (1249)
T 3sfz_A 662 CCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFG 741 (1249)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECC
T ss_pred EEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecC
Confidence 999999999999999999999999999999999999999999999999 556899999999999999999999999988
Q ss_pred ccceeeeeceeeEEEecC
Q 006229 638 YKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 638 ~~~~v~s~~Vss~~F~P~ 655 (655)
|... |.+++|+|+
T Consensus 742 h~~~-----v~~~~~sp~ 754 (1249)
T 3sfz_A 742 HTNS-----VNHCRFSPD 754 (1249)
T ss_dssp CSSC-----EEEEEECSS
T ss_pred CCCC-----EEEEEEecC
Confidence 7664 456777774
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.8e-15 Score=158.54 Aligned_cols=159 Identities=11% Similarity=0.058 Sum_probs=128.9
Q ss_pred eeccCCCCceEEEEecCCCCcc--------cccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCcee
Q 006229 474 LQHNGASSKSLLMFGSDGMGSL--------TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTF 545 (655)
Q Consensus 474 ~~~s~S~d~s~l~ws~dg~~~l--------asss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~ 545 (655)
.+..++.++.+.+|+......+ .+....+.+.+.+|++++.|+.|++|+...+
T Consensus 219 ~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~------------------- 279 (425)
T 1r5m_A 219 KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG------------------- 279 (425)
T ss_dssp EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSB-------------------
T ss_pred EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC-------------------
Confidence 4566677888888887653211 1222345666779999999999999955433
Q ss_pred eeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 006229 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (655)
Q Consensus 546 ~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWD 625 (655)
..+..+.+|...|.+++|+|++ +|++++.|+.|+|||+++++++..+..|...|++++|+|++.+|++++.|+.|+|||
T Consensus 280 ~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~ 358 (425)
T 1r5m_A 280 NSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYD 358 (425)
T ss_dssp SCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEE
Confidence 3455667899999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCe--------------------EEEEEecccceeeeeceeeEEEecC
Q 006229 626 TENVR--------------------KLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 626 l~tg~--------------------~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
++++. ++..+..+... ..|.+++|+|+
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~ 405 (425)
T 1r5m_A 359 LKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDN---DYIFDLSWNCA 405 (425)
T ss_dssp CHHHHC--------------CEECCEEEEECCTTCC---CCEEEEEECTT
T ss_pred CCCCccceeeeecccccccCcccchhhhhhcCcccC---CceEEEEccCC
Confidence 99888 78888777431 03567888875
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.65 E-value=4.5e-16 Score=160.15 Aligned_cols=109 Identities=13% Similarity=0.239 Sum_probs=98.5
Q ss_pred CcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeC
Q 006229 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCT 584 (655)
Q Consensus 506 ~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSp-dG~lLaSgs~DgtVrIWDl 584 (655)
+.++++|+.|++|++|+...+ +.+..+.+|...|.+++|+| ++.+|++|+.|++|+|||+
T Consensus 85 ~~~l~~~~~dg~i~v~d~~~~-------------------~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~ 145 (366)
T 3k26_A 85 HPLLAVAGSRGIIRIINPITM-------------------QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI 145 (366)
T ss_dssp CEEEEEEETTCEEEEECTTTC-------------------CEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred CCEEEEecCCCEEEEEEchhc-------------------eEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEe
Confidence 468999999999999965443 45677789999999999999 9999999999999999999
Q ss_pred CCCeEEEEe---cccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE
Q 006229 585 ESFTVKSTL---EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLT 633 (655)
Q Consensus 585 ~t~~~l~tl---~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~ 633 (655)
++++.+..+ .+|...|++++|+|++.+|++++.|++|+|||+++++.+.
T Consensus 146 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 197 (366)
T 3k26_A 146 QTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMN 197 (366)
T ss_dssp TTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHH
T ss_pred ecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCcccc
Confidence 999999998 7899999999999999999999999999999999876543
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.6e-15 Score=155.79 Aligned_cols=160 Identities=13% Similarity=0.110 Sum_probs=122.6
Q ss_pred CCceeccCCCCceEEEEecCCCCcccc-------------cCcc----cCCCCcEEEeccCCCcEEEEecCCCCCCCCcc
Q 006229 471 RPTLQHNGASSKSLLMFGSDGMGSLTS-------------APNQ----LTDMDRFVDDGSLDDNVESFLSPDDADPRDRV 533 (655)
Q Consensus 471 ~~~~~~s~S~d~s~l~ws~dg~~~las-------------ss~~----l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~ 533 (655)
....+.+++.++.+.+|+......... .... +.+.+.++++|+.|+.|++|+...+
T Consensus 128 ~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~------- 200 (357)
T 3i2n_A 128 GAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNM------- 200 (357)
T ss_dssp CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTT-------
T ss_pred CccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccC-------
Confidence 345777888899999998876431110 0111 4567788999999999999966543
Q ss_pred ccccccCCCceeeeEEeecCCCCCeeEEEEcC---CCCEEEEEeCCCcEEEEeCCCCeEEEEec-----ccCCCEEEEEE
Q 006229 534 GRSAEVGKGFTFTEFQLIPASTSKVESCHFSP---DGKLLATGGHDKKAVLWCTESFTVKSTLE-----EHTQWITDVRF 605 (655)
Q Consensus 534 ~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSp---dG~lLaSgs~DgtVrIWDl~t~~~l~tl~-----gH~~~ItsVaf 605 (655)
.. .....|...|.+++|+| ++.+|++|+.|+.|+|||+++++.+..+. +|...|++++|
T Consensus 201 ------------~~-~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~ 267 (357)
T 3i2n_A 201 ------------AL-RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRH 267 (357)
T ss_dssp ------------EE-EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEE
T ss_pred ------------ce-eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEE
Confidence 11 23356788999999999 99999999999999999998776554444 99999999999
Q ss_pred cCCCC-EEEEEeCCCcEEEEECCCC-------------------eEEEEEecccceeeeeceeeEEEecC
Q 006229 606 SPSLS-RLATSSADRTVRVWDTENV-------------------RKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 606 sPdg~-~LaSgS~DgtVrVWDl~tg-------------------~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
+|++. +|++++.||.|+|||++++ .++..+..|.. .|.+++|+|+
T Consensus 268 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-----~v~~~~~s~~ 332 (357)
T 3i2n_A 268 LPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQ-----PISSLDWSPD 332 (357)
T ss_dssp ETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSS-----CEEEEEECSS
T ss_pred CCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCC-----CeeEEEEcCC
Confidence 99998 8999999999999999854 35666666644 4567888875
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.65 E-value=5.9e-15 Score=150.00 Aligned_cols=129 Identities=18% Similarity=0.221 Sum_probs=106.4
Q ss_pred CCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEe--ecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 006229 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQL--IPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582 (655)
Q Consensus 505 ~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~--l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIW 582 (655)
.++++++++ |+.|++|+...+.. ...+.. ..+|...|.+++|+|++++|++++.|++|++|
T Consensus 62 ~~~~l~~~~-dg~i~iw~~~~~~~----------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~ 124 (337)
T 1gxr_A 62 PTRHVYTGG-KGCVKVWDISHPGN----------------KSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW 124 (337)
T ss_dssp SSSEEEEEC-BSEEEEEETTSTTC----------------CSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEE
T ss_pred CCcEEEEcC-CCeEEEEECCCCCc----------------eeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEE
Confidence 345888888 99999997655421 111222 23788999999999999999999999999999
Q ss_pred eCCCCe--EEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 583 CTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 583 Dl~t~~--~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
|+++++ ....+.+|...|++++|+|++.+|++++.|+.|++||+++++.+..+..|... +.+++|+|+
T Consensus 125 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~-----i~~~~~~~~ 194 (337)
T 1gxr_A 125 DLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDG-----ASCIDISND 194 (337)
T ss_dssp ECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC-----EEEEEECTT
T ss_pred ECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCc-----eEEEEECCC
Confidence 999887 67788899999999999999999999999999999999999999988877654 456777764
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.7e-15 Score=158.89 Aligned_cols=161 Identities=17% Similarity=0.258 Sum_probs=127.2
Q ss_pred CCceeccCCCCceEEEEecCCCCcccc------cCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCce
Q 006229 471 RPTLQHNGASSKSLLMFGSDGMGSLTS------APNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFT 544 (655)
Q Consensus 471 ~~~~~~s~S~d~s~l~ws~dg~~~las------ss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t 544 (655)
+...+.+++.++.+.+|+......+.. ....+....+++++|+.|++|++|+....
T Consensus 145 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~------------------ 206 (401)
T 4aez_A 145 DGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIA------------------ 206 (401)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSS------------------
T ss_pred CCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccC------------------
Confidence 445677777888999998765322111 01112224578999999999999966532
Q ss_pred eeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCC-CEEEEEe--CCCcE
Q 006229 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL-SRLATSS--ADRTV 621 (655)
Q Consensus 545 ~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg-~~LaSgS--~DgtV 621 (655)
...+..+.+|...|.+++|+|++++|++|+.|++|+|||+++++++.++.+|...|++++|+|++ .++++++ .|++|
T Consensus 207 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i 286 (401)
T 4aez_A 207 NHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQI 286 (401)
T ss_dssp SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEE
T ss_pred cceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEE
Confidence 13566778999999999999999999999999999999999999999999999999999999976 4666665 79999
Q ss_pred EEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 622 RVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 622 rVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
++||+++++++..+..+. .+.+++|+|+
T Consensus 287 ~i~d~~~~~~~~~~~~~~------~v~~~~~s~~ 314 (401)
T 4aez_A 287 HFWNAATGARVNTVDAGS------QVTSLIWSPH 314 (401)
T ss_dssp EEEETTTCCEEEEEECSS------CEEEEEECSS
T ss_pred EEEECCCCCEEEEEeCCC------cEEEEEECCC
Confidence 999999999998886443 3567888874
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.65 E-value=5e-15 Score=152.33 Aligned_cols=146 Identities=14% Similarity=0.167 Sum_probs=112.9
Q ss_pred CCCCceEEEEecCCCCcccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEee--cCCC
Q 006229 478 GASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI--PAST 555 (655)
Q Consensus 478 ~S~d~s~l~ws~dg~~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l--~gH~ 555 (655)
.......+.|+|+.. +.+..+++++.++.|++|+...+. ....+..+ ..|.
T Consensus 17 h~~~v~~i~~~p~~~-----------~~~~~~~~~~~~~~v~vw~~~~~~----------------~~~~~~~~~~~~~~ 69 (366)
T 3k26_A 17 HNQPLFGVQFNWHSK-----------EGDPLVFATVGSNRVTLYECHSQG----------------EIRLLQSYVDADAD 69 (366)
T ss_dssp TCSCEEEEEECTTCC-----------TTSCEEEEEEETTEEEEEEECGGG----------------CEEEEEEEECSCTT
T ss_pred CCCceEEEEEecccC-----------CCCceEEEECCCCEEEEEEcCCCc----------------EEEeeeeccccCCC
Confidence 344667777887521 112445555566799999665431 11222222 2377
Q ss_pred CCeeEEEEcCC----CCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCe
Q 006229 556 SKVESCHFSPD----GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENVR 630 (655)
Q Consensus 556 ~~V~sl~fSpd----G~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsP-dg~~LaSgS~DgtVrVWDl~tg~ 630 (655)
..|++++|+|+ +.+|++|+.|++|+|||+.+++++..+.+|...|++|+|+| ++.+|++|+.|++|+|||+++++
T Consensus 70 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 149 (366)
T 3k26_A 70 ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT 149 (366)
T ss_dssp CCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTE
T ss_pred CcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCe
Confidence 88999999998 67999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred EEEEE---ecccceeeeeceeeEEEecC
Q 006229 631 KLTFI---CCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 631 ~v~~l---~~~~~~v~s~~Vss~~F~P~ 655 (655)
++..+ ..|.. .|.+++|+|+
T Consensus 150 ~~~~~~~~~~~~~-----~v~~~~~~~~ 172 (366)
T 3k26_A 150 LVAIFGGVEGHRD-----EVLSADYDLL 172 (366)
T ss_dssp EEEEECSTTSCSS-----CEEEEEECTT
T ss_pred EEEEecccccccC-----ceeEEEECCC
Confidence 99888 44443 4567788774
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.65 E-value=3.8e-15 Score=160.94 Aligned_cols=166 Identities=20% Similarity=0.217 Sum_probs=127.2
Q ss_pred ceeccCCCCceEEEEecCCC---------Cc-c--------cccCcccCCCCc-EEEeccCCCcEEEEecCCCCCCCCcc
Q 006229 473 TLQHNGASSKSLLMFGSDGM---------GS-L--------TSAPNQLTDMDR-FVDDGSLDDNVESFLSPDDADPRDRV 533 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~---------~~-l--------asss~~l~~~~~-~LasGS~D~tV~vW~s~d~~d~~d~~ 533 (655)
.++++++.++.+.+|+.... .. + .+....+.+.+. +|++|+.|++|++|+...+..
T Consensus 142 ~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~----- 216 (430)
T 2xyi_A 142 CVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPK----- 216 (430)
T ss_dssp EEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCB-----
T ss_pred cEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCC-----
Confidence 56777777888888887641 11 0 112223444445 899999999999997665311
Q ss_pred ccccccCCCceeeeEEeecCCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCC---eEEEEecccCCCEEEEEEcCCC
Q 006229 534 GRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESF---TVKSTLEEHTQWITDVRFSPSL 609 (655)
Q Consensus 534 ~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSp-dG~lLaSgs~DgtVrIWDl~t~---~~l~tl~gH~~~ItsVafsPdg 609 (655)
..........+.+|...|.+|+|+| ++.+|++++.|+.|+|||++++ +.+..+.+|...|++|+|+|++
T Consensus 217 -------~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~ 289 (430)
T 2xyi_A 217 -------EHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYS 289 (430)
T ss_dssp -------GGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSC
T ss_pred -------CCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCC
Confidence 0111233556778999999999999 7889999999999999999987 5778888999999999999998
Q ss_pred C-EEEEEeCCCcEEEEECCC-CeEEEEEecccceeeeeceeeEEEecC
Q 006229 610 S-RLATSSADRTVRVWDTEN-VRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 610 ~-~LaSgS~DgtVrVWDl~t-g~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
. +|++|+.||+|+|||+++ ..++..+..|... |.++.|+|+
T Consensus 290 ~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~-----v~~i~~sp~ 332 (430)
T 2xyi_A 290 EFILATGSADKTVALWDLRNLKLKLHSFESHKDE-----IFQVQWSPH 332 (430)
T ss_dssp TTEEEEEETTSEEEEEETTCTTSCSEEEECCSSC-----EEEEEECSS
T ss_pred CCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCC-----EEEEEECCC
Confidence 7 699999999999999998 5667888777543 557788874
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.64 E-value=4.1e-15 Score=154.00 Aligned_cols=139 Identities=17% Similarity=0.263 Sum_probs=111.5
Q ss_pred CCceEEEEecCCCCcccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCee
Q 006229 480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE 559 (655)
Q Consensus 480 ~d~s~l~ws~dg~~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~ 559 (655)
.....+.|++++ .+|++|+.|+.|++|+...+ .+..+..+.+|...|.
T Consensus 9 ~~i~~~~~s~~~---------------~~l~~~~~d~~v~i~~~~~~-----------------~~~~~~~~~~h~~~v~ 56 (372)
T 1k8k_C 9 EPISCHAWNKDR---------------TQIAICPNNHEVHIYEKSGN-----------------KWVQVHELKEHNGQVT 56 (372)
T ss_dssp SCCCEEEECTTS---------------SEEEEECSSSEEEEEEEETT-----------------EEEEEEEEECCSSCEE
T ss_pred CCeEEEEECCCC---------------CEEEEEeCCCEEEEEeCCCC-----------------cEEeeeeecCCCCccc
Confidence 355667777654 48899999999999965433 1346778889999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEE--ecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE---EEE
Q 006229 560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRK---LTF 634 (655)
Q Consensus 560 sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~t--l~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~---v~~ 634 (655)
+++|+|++++|++++.|++|+|||+++++.... +.+|...|++++|+|++.+|++++.|+.|+|||++.+.. ...
T Consensus 57 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~ 136 (372)
T 1k8k_C 57 GVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKH 136 (372)
T ss_dssp EEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeee
Confidence 999999999999999999999999998875544 468999999999999999999999999999999988763 233
Q ss_pred E-ecccceeeeeceeeEEEecC
Q 006229 635 I-CCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 635 l-~~~~~~v~s~~Vss~~F~P~ 655 (655)
+ ..|. ..|.+++|+|+
T Consensus 137 ~~~~~~-----~~i~~~~~~~~ 153 (372)
T 1k8k_C 137 IKKPIR-----STVLSLDWHPN 153 (372)
T ss_dssp ECTTCC-----SCEEEEEECTT
T ss_pred eecccC-----CCeeEEEEcCC
Confidence 3 2232 34667788774
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-15 Score=171.41 Aligned_cols=99 Identities=9% Similarity=0.085 Sum_probs=83.7
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCC-----CEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 006229 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ-----WITDVRFSPSLSRLATSSADRTVRVWDTE 627 (655)
Q Consensus 553 gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~-----~ItsVafsPdg~~LaSgS~DgtVrVWDl~ 627 (655)
.|...|.+|+|||||.+||+++.|++|+|||..+ ++..+. |.. .|.+|+|+|||++||+|+.||+|+|||+.
T Consensus 83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~ 159 (588)
T 2j04_A 83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR 159 (588)
T ss_dssp SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence 5578899999999999999999999999999654 777788 776 49999999999999999999999999999
Q ss_pred CCe-------EEEEEecccceeeeeceeeEEEecC
Q 006229 628 NVR-------KLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 628 tg~-------~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
++. .+.++..+... +...|.+++|+|+
T Consensus 160 ~~~l~~~~~i~l~ti~~~~~g-h~~~V~sVawSPd 193 (588)
T 2j04_A 160 KNSENTPEFYFESSIRLSDAG-SKDWVTHIVWYED 193 (588)
T ss_dssp CCTTTCCCCEEEEEEECSCTT-CCCCEEEEEEETT
T ss_pred CCccccccceeeeeeeccccc-ccccEEEEEEcCC
Confidence 875 36777544322 3346778999996
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.8e-15 Score=159.35 Aligned_cols=162 Identities=11% Similarity=0.243 Sum_probs=124.6
Q ss_pred CCCceEEEEecCCCCc---c-------cccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeE
Q 006229 479 ASSKSLLMFGSDGMGS---L-------TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEF 548 (655)
Q Consensus 479 S~d~s~l~ws~dg~~~---l-------asss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v 548 (655)
+.++.+.+|+...... + .+....+.+.+.+|++|+.|+.|++|+...... ....+
T Consensus 42 ~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~---------------~~~~~ 106 (416)
T 2pm9_A 42 STDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANN---------------AINSM 106 (416)
T ss_dssp CCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTS---------------CCCEE
T ss_pred CCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeecccccc---------------cccch
Confidence 6778888888765321 1 122224466677899999999999996544210 11366
Q ss_pred EeecCCCCCeeEEEEcCC-CCEEEEEeCCCcEEEEeCCCCe------EEE---EecccCCCEEEEEEcCC-CCEEEEEeC
Q 006229 549 QLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFT------VKS---TLEEHTQWITDVRFSPS-LSRLATSSA 617 (655)
Q Consensus 549 ~~l~gH~~~V~sl~fSpd-G~lLaSgs~DgtVrIWDl~t~~------~l~---tl~gH~~~ItsVafsPd-g~~LaSgS~ 617 (655)
..+.+|...|.+|+|+|+ +++|++|+.|++|+|||+.+++ ... .+.+|...|++++|+|+ +.+|++++.
T Consensus 107 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 186 (416)
T 2pm9_A 107 ARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGS 186 (416)
T ss_dssp EECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESS
T ss_pred hhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcC
Confidence 778899999999999998 8999999999999999999876 332 34689999999999999 789999999
Q ss_pred CCcEEEEECCCCeEEEEEecccce-eeeeceeeEEEecC
Q 006229 618 DRTVRVWDTENVRKLTFICCYKCI-FVSTAIGSCFFAPT 655 (655)
Q Consensus 618 DgtVrVWDl~tg~~v~~l~~~~~~-v~s~~Vss~~F~P~ 655 (655)
|++|+|||+++++++..+..+... .+...+.+++|+|+
T Consensus 187 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 225 (416)
T 2pm9_A 187 SNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPK 225 (416)
T ss_dssp SSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSS
T ss_pred CCCEEEEECCCCCcceEEeccccccccCCceEEEEECCC
Confidence 999999999999999888765311 11344678888874
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.8e-15 Score=161.32 Aligned_cols=120 Identities=17% Similarity=0.158 Sum_probs=100.3
Q ss_pred ccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEE-------eecCCCCCeeEEEEcCCC-CEEEE
Q 006229 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQ-------LIPASTSKVESCHFSPDG-KLLAT 572 (655)
Q Consensus 501 ~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~-------~l~gH~~~V~sl~fSpdG-~lLaS 572 (655)
.+.+.+.++++| .|++|++|+.... ...+. .+.+|...|.+++|+|++ ++|++
T Consensus 184 ~~~~~~~~l~s~-~d~~i~iwd~~~~------------------~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s 244 (447)
T 3dw8_B 184 SINSDYETYLSA-DDLRINLWHLEIT------------------DRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVY 244 (447)
T ss_dssp EECTTSSEEEEE-CSSEEEEEETTEE------------------EEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEE
T ss_pred EEcCCCCEEEEe-CCCeEEEEECCCC------------------CceeeeeecccccccccCcceEEEEECCCCCcEEEE
Confidence 456667888888 7999999965422 01121 366899999999999998 99999
Q ss_pred EeCCCcEEEEeCCCCeE----EEEecccCC------------CEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CeEEEEE
Q 006229 573 GGHDKKAVLWCTESFTV----KSTLEEHTQ------------WITDVRFSPSLSRLATSSADRTVRVWDTEN-VRKLTFI 635 (655)
Q Consensus 573 gs~DgtVrIWDl~t~~~----l~tl~gH~~------------~ItsVafsPdg~~LaSgS~DgtVrVWDl~t-g~~v~~l 635 (655)
|+.|++|+|||+++++. +..+.+|.. .|++|+|+|++++|++++. ++|+|||+++ ++++..+
T Consensus 245 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~ 323 (447)
T 3dw8_B 245 SSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETY 323 (447)
T ss_dssp EETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCE
T ss_pred EeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcccccee
Confidence 99999999999999887 788988887 9999999999999999999 9999999997 8888888
Q ss_pred ecccc
Q 006229 636 CCYKC 640 (655)
Q Consensus 636 ~~~~~ 640 (655)
..|..
T Consensus 324 ~~~~~ 328 (447)
T 3dw8_B 324 QVHEY 328 (447)
T ss_dssp ESCGG
T ss_pred ecccc
Confidence 88754
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.63 E-value=6.6e-15 Score=148.37 Aligned_cols=171 Identities=11% Similarity=0.054 Sum_probs=134.4
Q ss_pred CceeccCCCCceEEEEecCCCCc--------ccccCcccCCCCcEEEeccCCCcEEEEecCCCCCC--------------
Q 006229 472 PTLQHNGASSKSLLMFGSDGMGS--------LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADP-------------- 529 (655)
Q Consensus 472 ~~~~~s~S~d~s~l~ws~dg~~~--------lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~-------------- 529 (655)
...+.+++.++.+.+|+...... -.+....+.+.+.++++|+.|+.|++|+..+....
T Consensus 29 ~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~ 108 (313)
T 3odt_A 29 DSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVC 108 (313)
T ss_dssp TTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEE
T ss_pred CCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEE
Confidence 35677888899999999865321 11223355677789999999999999976554311
Q ss_pred -------------CCccccccccCCCceeeeEEeecCCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeEEEEecc
Q 006229 530 -------------RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEE 595 (655)
Q Consensus 530 -------------~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSp-dG~lLaSgs~DgtVrIWDl~t~~~l~tl~g 595 (655)
.+..+++|+ ....+..+..|...|.+++|++ ++.+|++++.|+.|++|| ..+.+..+..
T Consensus 109 ~~~~~~~~l~~~~~d~~i~~~d-----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~ 181 (313)
T 3odt_A 109 SLSFQDGVVISGSWDKTAKVWK-----EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSG 181 (313)
T ss_dssp EEEEETTEEEEEETTSEEEEEE-----TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECS
T ss_pred EEEecCCEEEEEeCCCCEEEEc-----CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEec
Confidence 123335554 2245667788999999999998 999999999999999999 5677778877
Q ss_pred -cCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 596 -HTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 596 -H~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
|...|++++|+|++. |++++.|+.|+|||+++++++..+..|... |.+++|+|+
T Consensus 182 ~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-----i~~~~~~~~ 236 (313)
T 3odt_A 182 IHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESF-----VYCIKLLPN 236 (313)
T ss_dssp SCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSC-----EEEEEECTT
T ss_pred cCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCce-----EEEEEEecC
Confidence 999999999999988 999999999999999999999999877654 457778774
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.8e-15 Score=165.50 Aligned_cols=144 Identities=13% Similarity=0.088 Sum_probs=109.2
Q ss_pred CCCCcEEE----eccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCC-CCEEEEEeCCC
Q 006229 503 TDMDRFVD----DGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDK 577 (655)
Q Consensus 503 ~~~~~~La----sGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpd-G~lLaSgs~Dg 577 (655)
.+.+.+|+ +|+.|++|++|+........ ......+..+..+.+|...|.+|+|+|+ +.+|++++.|+
T Consensus 101 spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~--------~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg 172 (434)
T 2oit_A 101 SCDNLTLSACMMSSEYGSIIAFFDVRTFSNEA--------KQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADG 172 (434)
T ss_dssp CTTSCEEEEEEEETTTEEEEEEEEHHHHHCTT--------CSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTS
T ss_pred cCCCCEEEEEEeccCCCceEEEEEccccccCC--------cCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCC
Confidence 34445777 89999999999654321000 0000112345667789999999999997 88999999999
Q ss_pred cEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEeccccee--eeeceeeEEEecC
Q 006229 578 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIF--VSTAIGSCFFAPT 655 (655)
Q Consensus 578 tVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v--~s~~Vss~~F~P~ 655 (655)
+|+|||++++..+....+|...|++|+|+|+|++|++|+.||+|+|||++ +.....+..+.... +...+.++.|+|+
T Consensus 173 ~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~ 251 (434)
T 2oit_A 173 SIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGT 251 (434)
T ss_dssp CEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEET
T ss_pred eEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecC
Confidence 99999999998887788899999999999999999999999999999999 66666666553211 1224667777763
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=3.5e-15 Score=181.01 Aligned_cols=151 Identities=25% Similarity=0.325 Sum_probs=129.2
Q ss_pred CCCCceeccCCCCceEEEEecCCCCc--------ccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccC
Q 006229 469 ISRPTLQHNGASSKSLLMFGSDGMGS--------LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVG 540 (655)
Q Consensus 469 ~s~~~~~~s~S~d~s~l~ws~dg~~~--------lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~ 540 (655)
.++...+++++.++.+.+|+...... -.+....+.+.++++++|+.|++|++|+..++
T Consensus 624 s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~-------------- 689 (1249)
T 3sfz_A 624 SQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG-------------- 689 (1249)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC--------------
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCC--------------
Confidence 44557788888999999999876322 12233456777889999999999999976544
Q ss_pred CCceeeeEEeecCCCCCeeEEEEcC--CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCC
Q 006229 541 KGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD 618 (655)
Q Consensus 541 ~~~t~~~v~~l~gH~~~V~sl~fSp--dG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~D 618 (655)
+.+..+.+|...|.+++|++ ++.++++|+.|++|++||+++++++.++.+|...|++++|+|++.+|+|++.|
T Consensus 690 -----~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~d 764 (1249)
T 3sfz_A 690 -----KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSAD 764 (1249)
T ss_dssp -----CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESS
T ss_pred -----ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECC
Confidence 46777889999999999999 56699999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEECCCCeEEEEEecc
Q 006229 619 RTVRVWDTENVRKLTFICCY 638 (655)
Q Consensus 619 gtVrVWDl~tg~~v~~l~~~ 638 (655)
|+|++||++++.+...+...
T Consensus 765 g~v~vwd~~~~~~~~~~~~~ 784 (1249)
T 3sfz_A 765 GTLRLWDVRSANERKSINVK 784 (1249)
T ss_dssp SEEEEEEGGGTEEEEEEECC
T ss_pred CeEEEEeCCCCcccceeccc
Confidence 99999999999988877643
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.63 E-value=2.1e-15 Score=158.23 Aligned_cols=169 Identities=15% Similarity=0.111 Sum_probs=125.9
Q ss_pred ceeccCCCCceEEEEecCCCCc------------------ccccCcccC----CCCcE-EEeccCCCcEEEEecCCCCCC
Q 006229 473 TLQHNGASSKSLLMFGSDGMGS------------------LTSAPNQLT----DMDRF-VDDGSLDDNVESFLSPDDADP 529 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~~------------------lasss~~l~----~~~~~-LasGS~D~tV~vW~s~d~~d~ 529 (655)
..+.+++.++.+.+|+...... -.+....+. +.+.+ +++|+.|+.|++|+.......
T Consensus 82 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 161 (397)
T 1sq9_A 82 CLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADE 161 (397)
T ss_dssp EEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSH
T ss_pred cEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccc
Confidence 5677777888889998765331 112222445 66788 999999999999976551000
Q ss_pred CCccccccccCCCceeeeEEee-------cCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecc---c---
Q 006229 530 RDRVGRSAEVGKGFTFTEFQLI-------PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE---H--- 596 (655)
Q Consensus 530 ~d~~~~l~d~~~~~t~~~v~~l-------~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~g---H--- 596 (655)
. ......+.....+ ..|...|.+++|+|++ +|++|+.|+.|+|||+++++++..+.+ |
T Consensus 162 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~ 232 (397)
T 1sq9_A 162 S--------NSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINN 232 (397)
T ss_dssp H--------HHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CC
T ss_pred c--------ccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEecccccccc
Confidence 0 0000001111233 4588999999999999 999999999999999999999999999 9
Q ss_pred CCCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeEEEEEec-------------ccceeeeeceeeEEEecC
Q 006229 597 TQWITDVRFSPSLSRLATSSAD---RTVRVWDTENVRKLTFICC-------------YKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 597 ~~~ItsVafsPdg~~LaSgS~D---gtVrVWDl~tg~~v~~l~~-------------~~~~v~s~~Vss~~F~P~ 655 (655)
...|++++|+|++.+|++++.| +.|+|||+++++++..+.. |.. .|.+++|+|+
T Consensus 233 ~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~ 302 (397)
T 1sq9_A 233 SNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS-----WVMSLSFNDS 302 (397)
T ss_dssp CCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSS-----CEEEEEECSS
T ss_pred CCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCC-----cEEEEEECCC
Confidence 9999999999999999999999 9999999999999998877 443 4567888874
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.63 E-value=4.7e-15 Score=160.26 Aligned_cols=161 Identities=20% Similarity=0.286 Sum_probs=124.6
Q ss_pred eeccCCCCceEEEEecCCCCc----------c-----cccCcccCC-CCcEEEeccCCCcEEEEecCCCCCCCCcccccc
Q 006229 474 LQHNGASSKSLLMFGSDGMGS----------L-----TSAPNQLTD-MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSA 537 (655)
Q Consensus 474 ~~~s~S~d~s~l~ws~dg~~~----------l-----asss~~l~~-~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~ 537 (655)
.+.+++.++.+.+|+...... + .+....+.+ ...++++++.|+.|++|+.....
T Consensus 196 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~---------- 265 (430)
T 2xyi_A 196 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNN---------- 265 (430)
T ss_dssp EEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSC----------
T ss_pred eEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCC----------
Confidence 778888899999999876211 0 011123344 55788999999999999765441
Q ss_pred ccCCCceeeeEEeecCCCCCeeEEEEcCCCC-EEEEEeCCCcEEEEeCCC-CeEEEEecccCCCEEEEEEcCCCC-EEEE
Q 006229 538 EVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLS-RLAT 614 (655)
Q Consensus 538 d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~-lLaSgs~DgtVrIWDl~t-~~~l~tl~gH~~~ItsVafsPdg~-~LaS 614 (655)
....+..+..|...|++|+|+|++. +|++|+.|++|+|||+++ ..++.++.+|...|++|+|+|++. +|++
T Consensus 266 ------~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s 339 (430)
T 2xyi_A 266 ------TSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 339 (430)
T ss_dssp ------SSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEE
T ss_pred ------CCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEE
Confidence 1134455678999999999999887 799999999999999998 567889999999999999999985 7999
Q ss_pred EeCCCcEEEEECCC--------------CeEEEEEecccceeeeeceeeEEEecC
Q 006229 615 SSADRTVRVWDTEN--------------VRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 615 gS~DgtVrVWDl~t--------------g~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
++.|++|+|||++. ...+..+.+|.. .|.+++|+|+
T Consensus 340 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~~p~ 389 (430)
T 2xyi_A 340 SGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA-----KISDFSWNPN 389 (430)
T ss_dssp EETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSS-----CEEEEEECSS
T ss_pred EeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCC-----CceEEEECCC
Confidence 99999999999987 355556555544 3557777774
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.63 E-value=2.1e-15 Score=161.00 Aligned_cols=135 Identities=10% Similarity=0.024 Sum_probs=95.9
Q ss_pred CCceeccCCCCceEEEEecCCCCcccc-----------cCcccCCCCcEE------------EeccCCCcEEEEecCCCC
Q 006229 471 RPTLQHNGASSKSLLMFGSDGMGSLTS-----------APNQLTDMDRFV------------DDGSLDDNVESFLSPDDA 527 (655)
Q Consensus 471 ~~~~~~s~S~d~s~l~ws~dg~~~las-----------ss~~l~~~~~~L------------asGS~D~tV~vW~s~d~~ 527 (655)
+...+++++.|+++.+|+......+.. ....|.+.+.++ ++|+.|++|++|+...+
T Consensus 192 ~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tg- 270 (356)
T 2w18_A 192 MQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTT- 270 (356)
T ss_dssp STTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTT-
T ss_pred CCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCC-
Confidence 346788889999999999974211110 011244444444 56677777777754433
Q ss_pred CCCCccccccccCCCceeeeEEee-----cCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEE-
Q 006229 528 DPRDRVGRSAEVGKGFTFTEFQLI-----PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWIT- 601 (655)
Q Consensus 528 d~~d~~~~l~d~~~~~t~~~v~~l-----~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~It- 601 (655)
+.+..+ .+|...+.+.+++ +.++++|+.|++|||||+.+++++.+|.+|.+.|.
T Consensus 271 ------------------k~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs 330 (356)
T 2w18_A 271 ------------------LSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWS 330 (356)
T ss_dssp ------------------EEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCC
T ss_pred ------------------EEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEE
Confidence 222222 4777777666665 88999999999999999999999999999988765
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEC
Q 006229 602 DVRFSPSLSRLATSSADRTVRVWDT 626 (655)
Q Consensus 602 sVafsPdg~~LaSgS~DgtVrVWDl 626 (655)
+|+|+|||++|+|||.|++|||||+
T Consensus 331 ~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 331 FVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEECCCCCEEEEEECCCcEEEecC
Confidence 6999999999999999999999996
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-14 Score=148.56 Aligned_cols=130 Identities=12% Similarity=0.182 Sum_probs=113.0
Q ss_pred cCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEE
Q 006229 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 581 (655)
Q Consensus 502 l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrI 581 (655)
+.+.+.++++++.|+.|++|+.... ...+..+..|...|.+++|+|++++|++++.|+.|+|
T Consensus 183 ~~~~~~~l~~~~~dg~i~i~d~~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v 244 (369)
T 3zwl_B 183 WSTKGKYIIAGHKDGKISKYDVSNN------------------YEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFL 244 (369)
T ss_dssp ECGGGCEEEEEETTSEEEEEETTTT------------------TEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred EcCCCCEEEEEcCCCEEEEEECCCC------------------cEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEE
Confidence 4455678899999999999965442 2466778889999999999999999999999999999
Q ss_pred EeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCC--------------cEEEEECCCCeEEEEEecccceeeeece
Q 006229 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR--------------TVRVWDTENVRKLTFICCYKCIFVSTAI 647 (655)
Q Consensus 582 WDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~Dg--------------tVrVWDl~tg~~v~~l~~~~~~v~s~~V 647 (655)
||+++++++..+. |...|++++|+|++.+|++++.|+ .|++||+.+++++..+..|... |
T Consensus 245 ~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-----v 318 (369)
T 3zwl_B 245 VDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGP-----L 318 (369)
T ss_dssp EETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSC-----E
T ss_pred EECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCc-----E
Confidence 9999999998887 888999999999999999999998 8999999999999999887654 4
Q ss_pred eeEEEecC
Q 006229 648 GSCFFAPT 655 (655)
Q Consensus 648 ss~~F~P~ 655 (655)
.+++|+|+
T Consensus 319 ~~~~~s~~ 326 (369)
T 3zwl_B 319 NTVAISPQ 326 (369)
T ss_dssp EEEEECTT
T ss_pred EEEEECCC
Confidence 56777774
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.62 E-value=5.7e-15 Score=163.46 Aligned_cols=126 Identities=18% Similarity=0.218 Sum_probs=107.0
Q ss_pred CcEEEeccC-CCcEEEEecCCCCCCCCccccccccCCCceeeeE-EeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEe
Q 006229 506 DRFVDDGSL-DDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEF-QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC 583 (655)
Q Consensus 506 ~~~LasGS~-D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v-~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWD 583 (655)
+.++++++. |+.|++|+..++ ... ..+.+|...|++++|+|++++|++|+.|+.|+|||
T Consensus 456 ~~~l~~~~~~d~~i~~~~~~~~-------------------~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~ 516 (615)
T 1pgu_A 456 QNYVAVGLEEGNTIQVFKLSDL-------------------EVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYD 516 (615)
T ss_dssp SSEEEEEETTTSCEEEEETTEE-------------------EEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CCEEEEeecCCCeEEEEECCCc-------------------cccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEee
Confidence 456777777 777777744322 111 66778999999999999999999999999999999
Q ss_pred CCCCeEEEEecc-cCCCEEEEEEcC----------CCCEEEEEeCCCcEEEEECCCC-eEEEEEecccceeeeeceeeEE
Q 006229 584 TESFTVKSTLEE-HTQWITDVRFSP----------SLSRLATSSADRTVRVWDTENV-RKLTFICCYKCIFVSTAIGSCF 651 (655)
Q Consensus 584 l~t~~~l~tl~g-H~~~ItsVafsP----------dg~~LaSgS~DgtVrVWDl~tg-~~v~~l~~~~~~v~s~~Vss~~ 651 (655)
+.+++++..+.+ |...|++|+|+| ++++|++++.|++|+|||+.++ +++..+.+|... |.+++
T Consensus 517 ~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~-----v~~l~ 591 (615)
T 1pgu_A 517 LQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDG-----VNNLL 591 (615)
T ss_dssp TTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTC-----EEEEE
T ss_pred CCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccc-----eEEEE
Confidence 999999999998 999999999999 9999999999999999999988 788888777554 55778
Q ss_pred EecC
Q 006229 652 FAPT 655 (655)
Q Consensus 652 F~P~ 655 (655)
|+|+
T Consensus 592 ~s~~ 595 (615)
T 1pgu_A 592 WETP 595 (615)
T ss_dssp EEET
T ss_pred EcCC
Confidence 8875
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.62 E-value=2.8e-15 Score=153.65 Aligned_cols=172 Identities=11% Similarity=0.066 Sum_probs=130.2
Q ss_pred CCc-eeccCCCCceEEEEec-CCCCcc---------cccCcccCCCCcEEEeccCCCcEEEEecCC---------CCC--
Q 006229 471 RPT-LQHNGASSKSLLMFGS-DGMGSL---------TSAPNQLTDMDRFVDDGSLDDNVESFLSPD---------DAD-- 528 (655)
Q Consensus 471 ~~~-~~~s~S~d~s~l~ws~-dg~~~l---------asss~~l~~~~~~LasGS~D~tV~vW~s~d---------~~d-- 528 (655)
... .+.+++.++.+.+|+. ...... .+....+.+ +.++++++.|+.|++|+... ...
T Consensus 67 ~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 145 (342)
T 1yfq_A 67 NTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN 145 (342)
T ss_dssp SSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSS
T ss_pred CCCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeee
Confidence 345 6777778888999987 542211 111224455 78899999999999997554 220
Q ss_pred ---------------------CCCccccccccCC-CceeeeEEeecCCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCC
Q 006229 529 ---------------------PRDRVGRSAEVGK-GFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE 585 (655)
Q Consensus 529 ---------------------~~d~~~~l~d~~~-~~t~~~v~~l~gH~~~V~sl~fSp-dG~lLaSgs~DgtVrIWDl~ 585 (655)
..+..+++|+... ... ........|...|.+++|+| ++++|++|+.|+.|+|||++
T Consensus 146 ~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~ 224 (342)
T 1yfq_A 146 NTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD-NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFD 224 (342)
T ss_dssp SSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTC-CCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECC
T ss_pred EEeeCCceEEEEecCCcEEEEeCCCeEEEEECCccccc-cceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEc
Confidence 1123446666655 321 12234457888999999999 99999999999999999998
Q ss_pred CC------eEEEEecccCC---------CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecc-cceeee
Q 006229 586 SF------TVKSTLEEHTQ---------WITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCY-KCIFVS 644 (655)
Q Consensus 586 t~------~~l~tl~gH~~---------~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~-~~~v~s 644 (655)
.. +.+..+.+|.. .|++++|+|++++|++++.||+|+|||+++++++..+..| ...+.+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~ 299 (342)
T 1yfq_A 225 DQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVK 299 (342)
T ss_dssp TTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEE
T ss_pred CCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceE
Confidence 87 78888888866 9999999999999999999999999999999999999887 665543
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=5.7e-15 Score=154.24 Aligned_cols=163 Identities=15% Similarity=0.112 Sum_probs=111.4
Q ss_pred ceeccCCCCceEEEEecCCCCcc--------cccCcccCCCCc-EEEeccCCCcEEEEecCCCCCCCCccccccccCCC-
Q 006229 473 TLQHNGASSKSLLMFGSDGMGSL--------TSAPNQLTDMDR-FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKG- 542 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~~l--------asss~~l~~~~~-~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~- 542 (655)
..+..++.++.+.+|+......+ .+....+.+.+. ++++|+.|+.|++|+....... ...++....
T Consensus 157 ~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~~ 232 (408)
T 4a11_B 157 CLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGC----LITLDQHNGK 232 (408)
T ss_dssp CEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCC----SEECCTTTTC
T ss_pred cEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcc----cccccccccc
Confidence 36667777888888887642211 112224455555 6899999999999987665311 111111111
Q ss_pred ceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC-----------------------------------
Q 006229 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF----------------------------------- 587 (655)
Q Consensus 543 ~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~----------------------------------- 587 (655)
........+.+|...|.+++|+|++++|++++.|+.|++||++++
T Consensus 233 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (408)
T 4a11_B 233 KSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPY 312 (408)
T ss_dssp SCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEE
T ss_pred cceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEec
Confidence 111122334678999999999999999999999999999998653
Q ss_pred ------------eEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEeccc
Q 006229 588 ------------TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYK 639 (655)
Q Consensus 588 ------------~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~ 639 (655)
+++..+.+|...|++++|+|++.+|+||+.||+|+|||+++++.+.......
T Consensus 313 ~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~ 376 (408)
T 4a11_B 313 GSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETT 376 (408)
T ss_dssp TTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-----------
T ss_pred CCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceE
Confidence 4567788999999999999999999999999999999999988876554433
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.61 E-value=6.2e-15 Score=157.75 Aligned_cols=143 Identities=8% Similarity=0.075 Sum_probs=108.3
Q ss_pred cEEEeccCCCcEEEEecCC---CC----------------------------CCCCccccccccC---CCcee-----ee
Q 006229 507 RFVDDGSLDDNVESFLSPD---DA----------------------------DPRDRVGRSAEVG---KGFTF-----TE 547 (655)
Q Consensus 507 ~~LasGS~D~tV~vW~s~d---~~----------------------------d~~d~~~~l~d~~---~~~t~-----~~ 547 (655)
.+|++|+.|++|++|+... +. ...+..+++|++. .+... ..
T Consensus 77 ~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~ 156 (437)
T 3gre_A 77 PYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCEC 156 (437)
T ss_dssp CEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEE
T ss_pred CEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccce
Confidence 4889999999999997544 11 1123444666663 22111 11
Q ss_pred EEeec--C--CCCCeeEEE--EcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecc--cCCCEEEEEEcCCCCEEEEEeCCC
Q 006229 548 FQLIP--A--STSKVESCH--FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE--HTQWITDVRFSPSLSRLATSSADR 619 (655)
Q Consensus 548 v~~l~--g--H~~~V~sl~--fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~g--H~~~ItsVafsPdg~~LaSgS~Dg 619 (655)
+..+. . +...+.++. +++++.+|++|+.|++|++||+++++++.++.+ |...|++|+|+|++.+|++|+.||
T Consensus 157 i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg 236 (437)
T 3gre_A 157 IRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRG 236 (437)
T ss_dssp EEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTS
T ss_pred eEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCC
Confidence 22221 1 566788887 668999999999999999999999999999998 899999999999999999999999
Q ss_pred cEEEEECCCCeEEEEEe-cccceeeeeceeeEEEec
Q 006229 620 TVRVWDTENVRKLTFIC-CYKCIFVSTAIGSCFFAP 654 (655)
Q Consensus 620 tVrVWDl~tg~~v~~l~-~~~~~v~s~~Vss~~F~P 654 (655)
+|+|||+++++++..+. .+... |.+++|+|
T Consensus 237 ~i~iwd~~~~~~~~~~~~~~~~~-----v~~~~~~~ 267 (437)
T 3gre_A 237 IIDIWDIRFNVLIRSWSFGDHAP-----ITHVEVCQ 267 (437)
T ss_dssp CEEEEETTTTEEEEEEBCTTCEE-----EEEEEECT
T ss_pred eEEEEEcCCccEEEEEecCCCCc-----eEEEEecc
Confidence 99999999999999886 44433 34554444
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.60 E-value=2.2e-14 Score=158.77 Aligned_cols=167 Identities=17% Similarity=0.196 Sum_probs=129.2
Q ss_pred CCceeccCCCCceEEEEecCCC----Cc--------cc-ccCcccCC--CCcEEEeccCCCcEEEEecCCC--------C
Q 006229 471 RPTLQHNGASSKSLLMFGSDGM----GS--------LT-SAPNQLTD--MDRFVDDGSLDDNVESFLSPDD--------A 527 (655)
Q Consensus 471 ~~~~~~s~S~d~s~l~ws~dg~----~~--------la-sss~~l~~--~~~~LasGS~D~tV~vW~s~d~--------~ 527 (655)
+...+..++ +..+.+|+.+.. .. -. +....+.+ .+++|++|+.|++|++|+...+ .
T Consensus 29 dg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~ 107 (615)
T 1pgu_A 29 TTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVN 107 (615)
T ss_dssp TTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEE
T ss_pred CCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCccccccccc
Confidence 344444444 567888887633 11 11 33445677 7789999999999999977432 0
Q ss_pred -------------------CCC-------C----ccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCC-EEEEEeCC
Q 006229 528 -------------------DPR-------D----RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHD 576 (655)
Q Consensus 528 -------------------d~~-------d----~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~-lLaSgs~D 576 (655)
++. + ..+.+|+. ...+..+.+|...|.+++|+|+++ +|++++.|
T Consensus 108 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~-----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 182 (615)
T 1pgu_A 108 VKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS-----GNSLGEVSGHSQRINACHLKQSRPMRSMTVGDD 182 (615)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTT-----CCEEEECCSCSSCEEEEEECSSSSCEEEEEETT
T ss_pred ccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEEC-----CCcceeeecCCccEEEEEECCCCCcEEEEEeCC
Confidence 000 0 23334441 245677889999999999999998 89999999
Q ss_pred CcEEEEeCCCCeEEEEecccCC---CEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeEEEEE-e---cccceee
Q 006229 577 KKAVLWCTESFTVKSTLEEHTQ---WITDVRFSPS-LSRLATSSADRTVRVWDTENVRKLTFI-C---CYKCIFV 643 (655)
Q Consensus 577 gtVrIWDl~t~~~l~tl~gH~~---~ItsVafsPd-g~~LaSgS~DgtVrVWDl~tg~~v~~l-~---~~~~~v~ 643 (655)
++|+|||+.+++++.++.+|.. .|++++|+|+ +++|++++.|+.|+|||+++++++..+ . .|...+.
T Consensus 183 ~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~ 257 (615)
T 1pgu_A 183 GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIF 257 (615)
T ss_dssp TEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEE
T ss_pred CcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceE
Confidence 9999999999999999999999 9999999999 999999999999999999999999888 4 5554443
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.6e-14 Score=155.77 Aligned_cols=164 Identities=19% Similarity=0.297 Sum_probs=116.0
Q ss_pred ceeccCCCCceEEEEecCCCCcccc------cCcccCCCCcEEEeccCCCcEEEEecCCCC-------------------
Q 006229 473 TLQHNGASSKSLLMFGSDGMGSLTS------APNQLTDMDRFVDDGSLDDNVESFLSPDDA------------------- 527 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~~las------ss~~l~~~~~~LasGS~D~tV~vW~s~d~~------------------- 527 (655)
..+.+++.++.+.+|+......+.. ....+...+.++++|+.|++|++|+..++.
T Consensus 130 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~ 209 (445)
T 2ovr_B 130 NRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE 209 (445)
T ss_dssp TEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET
T ss_pred CEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecCCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecC
Confidence 4666777777888887654211110 001112224577788888888888765442
Q ss_pred -----CCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEE
Q 006229 528 -----DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITD 602 (655)
Q Consensus 528 -----d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~Its 602 (655)
...+..+++|+..++ +.+..+.+|...|.+++| ++.+|++|+.|++|++||+++++++.++.+|...|++
T Consensus 210 ~~l~s~s~dg~i~~wd~~~~---~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 284 (445)
T 2ovr_B 210 KRVVSGSRDATLRVWDIETG---QCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS 284 (445)
T ss_dssp TEEEEEETTSEEEEEESSSC---CEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEE
T ss_pred CEEEEEeCCCEEEEEECCCC---cEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEE
Confidence 122344466666554 456667788888888888 6788888888888888888888888888888888888
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceee
Q 006229 603 VRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFV 643 (655)
Q Consensus 603 VafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~ 643 (655)
++| ++.+|++|+.|++|++||+++++++..+..|...+.
T Consensus 285 ~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~ 323 (445)
T 2ovr_B 285 LQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTS 323 (445)
T ss_dssp EEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEE
T ss_pred EEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEE
Confidence 888 678888888888888888888888888877765443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.60 E-value=8.4e-15 Score=168.86 Aligned_cols=161 Identities=17% Similarity=0.226 Sum_probs=129.5
Q ss_pred CCceeccCCCCceEEEEecCCCCc--------ccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCC
Q 006229 471 RPTLQHNGASSKSLLMFGSDGMGS--------LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKG 542 (655)
Q Consensus 471 ~~~~~~s~S~d~s~l~ws~dg~~~--------lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~ 542 (655)
+...+.+++.++.+.+|+...... ..+....+.+.+.+|++|+.|++|++|+..++
T Consensus 24 ~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~---------------- 87 (814)
T 3mkq_A 24 TEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG---------------- 87 (814)
T ss_dssp SSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC----------------
T ss_pred CCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCC----------------
Confidence 345677777788899998754211 11223345666788999999999999976544
Q ss_pred ceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC-eEEEEecccCCCEEEEEEcC-CCCEEEEEeCCCc
Q 006229 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFSP-SLSRLATSSADRT 620 (655)
Q Consensus 543 ~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~-~~l~tl~gH~~~ItsVafsP-dg~~LaSgS~Dgt 620 (655)
+.+..+.+|.+.|++++|+|++++|++|+.|++|+|||++++ .+...+.+|...|++++|+| ++.+|++++.|++
T Consensus 88 ---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~ 164 (814)
T 3mkq_A 88 ---EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRT 164 (814)
T ss_dssp ---CEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSE
T ss_pred ---cEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCe
Confidence 466777899999999999999999999999999999999987 78888999999999999999 8899999999999
Q ss_pred EEEEECCCCeEEEEEecccceeeeeceeeEEEec
Q 006229 621 VRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAP 654 (655)
Q Consensus 621 VrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P 654 (655)
|++||++++.....+..+.. ..+..++|+|
T Consensus 165 v~vwd~~~~~~~~~~~~~~~----~~v~~~~~~~ 194 (814)
T 3mkq_A 165 VKVWSLGQSTPNFTLTTGQE----RGVNYVDYYP 194 (814)
T ss_dssp EEEEETTCSSCSEEEECCCT----TCCCEEEECC
T ss_pred EEEEECCCCcceeEEecCCC----CCEEEEEEEE
Confidence 99999998888777765531 2244566665
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.7e-14 Score=146.00 Aligned_cols=174 Identities=14% Similarity=0.206 Sum_probs=124.9
Q ss_pred eeccCCCCceEEEEecCCCCc----------ccccCcccCCCCcEEEeccCCCcEEEEecCCCCCC--------------
Q 006229 474 LQHNGASSKSLLMFGSDGMGS----------LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADP-------------- 529 (655)
Q Consensus 474 ~~~s~S~d~s~l~ws~dg~~~----------lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~-------------- 529 (655)
+++. +.|+++.+|+.+.... ..+....+.+.++++++|+.|++|++|+..++...
T Consensus 38 ~lAv-g~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~ 116 (318)
T 4ggc_A 38 VLAV-ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLS 116 (318)
T ss_dssp EEEE-EETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEE
T ss_pred EEEE-EeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEee
Confidence 3443 3488999999865211 11334466777899999999999999987765410
Q ss_pred ----------CCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE----EEE---
Q 006229 530 ----------RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV----KST--- 592 (655)
Q Consensus 530 ----------~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~----l~t--- 592 (655)
.+.....|+... ....+..+.+|...+.++.|++++++|++++.|++|+|||+++++. +..
T Consensus 117 ~~~~~l~s~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 194 (318)
T 4ggc_A 117 WNSYILSSGSRSGHIHHHDVRV--AEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ 194 (318)
T ss_dssp EETTEEEEEETTSEEEEEETTS--SSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECC
T ss_pred cCCCEEEEEecCCceEeeecCC--CceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecc
Confidence 111112222222 1245667789999999999999999999999999999999875421 000
Q ss_pred -----------------------------------------ecccCCCEEEEEEcCCCCEEEEEe--CCCcEEEEECCCC
Q 006229 593 -----------------------------------------LEEHTQWITDVRFSPSLSRLATSS--ADRTVRVWDTENV 629 (655)
Q Consensus 593 -----------------------------------------l~gH~~~ItsVafsPdg~~LaSgS--~DgtVrVWDl~tg 629 (655)
...|...|.+++|+|++..+++++ .|++|+|||++++
T Consensus 195 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~ 274 (318)
T 4ggc_A 195 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM 274 (318)
T ss_dssp CCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC
T ss_pred cCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCC
Confidence 012445677888899888887765 7999999999999
Q ss_pred eEEEEEecccceeeeeceeeEEEecC
Q 006229 630 RKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 630 ~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
+++.++.+|... |.+++|+|+
T Consensus 275 ~~~~~l~gH~~~-----V~~l~~spd 295 (318)
T 4ggc_A 275 AKVAELKGHTSR-----VLSLTMSPD 295 (318)
T ss_dssp CEEEEECCCSSC-----EEEEEECTT
T ss_pred cEEEEEcCCCCC-----EEEEEEcCC
Confidence 999999988664 557888885
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-14 Score=157.01 Aligned_cols=165 Identities=16% Similarity=0.225 Sum_probs=129.4
Q ss_pred CceeccCCCCceEEEEecCCCCccc------ccCcccCCCCcEEEeccCCCcEEEEecCCCCC-----------------
Q 006229 472 PTLQHNGASSKSLLMFGSDGMGSLT------SAPNQLTDMDRFVDDGSLDDNVESFLSPDDAD----------------- 528 (655)
Q Consensus 472 ~~~~~s~S~d~s~l~ws~dg~~~la------sss~~l~~~~~~LasGS~D~tV~vW~s~d~~d----------------- 528 (655)
...+.+++.++.+.+|+......+. .....+...+.++++|+.|++|++|+...+..
T Consensus 183 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~ 262 (435)
T 1p22_A 183 ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV 262 (435)
T ss_dssp SSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEE
Confidence 4577888889999999886532111 01112223356889999999999997765431
Q ss_pred ----------CCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCC
Q 006229 529 ----------PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ 598 (655)
Q Consensus 529 ----------~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~ 598 (655)
..+..+++|+..++ ..+..+.+|...|.++.|+ +.+|++|+.|++|+|||+++++++.++.+|..
T Consensus 263 ~~~~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~ 337 (435)
T 1p22_A 263 DFDDKYIVSASGDRTIKVWNTSTC---EFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEE 337 (435)
T ss_dssp EEETTEEEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSS
T ss_pred EeCCCEEEEEeCCCeEEEEECCcC---cEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcC
Confidence 12344567776655 5677788999999999994 78999999999999999999999999999999
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---------EEEEEecccceee
Q 006229 599 WITDVRFSPSLSRLATSSADRTVRVWDTENVR---------KLTFICCYKCIFV 643 (655)
Q Consensus 599 ~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~---------~v~~l~~~~~~v~ 643 (655)
.|++++| ++.+|++|+.||+|+|||++++. ++..+..|...+.
T Consensus 338 ~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~ 389 (435)
T 1p22_A 338 LVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVF 389 (435)
T ss_dssp CEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCC
T ss_pred cEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeE
Confidence 9999999 78999999999999999998766 8888888776544
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.59 E-value=3.3e-14 Score=152.70 Aligned_cols=181 Identities=17% Similarity=0.225 Sum_probs=134.2
Q ss_pred CCCCceeccCCCCceEEEEecCCCCccc------ccCcccCCCCcEEEeccCCCcEEEEecCCCC---------------
Q 006229 469 ISRPTLQHNGASSKSLLMFGSDGMGSLT------SAPNQLTDMDRFVDDGSLDDNVESFLSPDDA--------------- 527 (655)
Q Consensus 469 ~s~~~~~~s~S~d~s~l~ws~dg~~~la------sss~~l~~~~~~LasGS~D~tV~vW~s~d~~--------------- 527 (655)
.++...+++++.++.+.+|+......+. .....+...+.++++|+.|+.+++|+.....
T Consensus 156 spdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~ 235 (420)
T 4gga_A 156 IKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCG 235 (420)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEE
T ss_pred CCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceee
Confidence 3445677788888888899876532111 1111233445789999999999999765432
Q ss_pred ------------CCCCccccccccCCCce-eeeEEeecCCCCCeeEEEEcCCC-CEEEEE--eCCCcEEEEeCCCCeEEE
Q 006229 528 ------------DPRDRVGRSAEVGKGFT-FTEFQLIPASTSKVESCHFSPDG-KLLATG--GHDKKAVLWCTESFTVKS 591 (655)
Q Consensus 528 ------------d~~d~~~~l~d~~~~~t-~~~v~~l~gH~~~V~sl~fSpdG-~lLaSg--s~DgtVrIWDl~t~~~l~ 591 (655)
...+..+++|+...+.. ...+.....|...|.+++|+|++ .+|+++ +.|++|+|||+.+++++.
T Consensus 236 ~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~ 315 (420)
T 4gga_A 236 LRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS 315 (420)
T ss_dssp EEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEE
T ss_pred eeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccce
Confidence 11234456666655432 23456677899999999999955 466654 579999999999999999
Q ss_pred EecccCCCEEEEEEcCCCCEEEEEe--CCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 592 TLEEHTQWITDVRFSPSLSRLATSS--ADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 592 tl~gH~~~ItsVafsPdg~~LaSgS--~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
.+..| ..|.++.|+|++..|++++ .|++|+|||+.+++++.++.+|... |.+++|+|+
T Consensus 316 ~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~-----V~~l~~spd 375 (420)
T 4gga_A 316 AVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSR-----VLSLTMSPD 375 (420)
T ss_dssp EEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSC-----EEEEEECTT
T ss_pred eeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCC-----EEEEEEcCC
Confidence 88755 5688999999999988876 7999999999999999999988764 557788885
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.59 E-value=3.4e-14 Score=149.97 Aligned_cols=173 Identities=16% Similarity=0.068 Sum_probs=112.2
Q ss_pred CCCCceeccCCCCceEEEEecCCCCcc------cccCcccCCCCcEE-EeccCCCcEEEEecCCCCCC------------
Q 006229 469 ISRPTLQHNGASSKSLLMFGSDGMGSL------TSAPNQLTDMDRFV-DDGSLDDNVESFLSPDDADP------------ 529 (655)
Q Consensus 469 ~s~~~~~~s~S~d~s~l~ws~dg~~~l------asss~~l~~~~~~L-asGS~D~tV~vW~s~d~~d~------------ 529 (655)
.++...+.+++.+ ...+|+.+..... .+....+.....++ .+|+.|++|++|+...+...
T Consensus 28 s~dg~~la~g~~~-~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v 106 (355)
T 3vu4_A 28 NQDQSCLILSTLK-SFEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDL 106 (355)
T ss_dssp CTTSSEEEEECSS-EEEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEECSSCEEEE
T ss_pred CCCCCEEEEEcCC-EEEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEECCCceEEE
Confidence 3444566666555 4568886642111 11112223333444 67888899999987655310
Q ss_pred ----------CCccccccccCCC-ceeeeEEeecCCCCCeeEEEEcCCCCEEEE--EeCCCcEEEEeCCCCe--------
Q 006229 530 ----------RDRVGRSAEVGKG-FTFTEFQLIPASTSKVESCHFSPDGKLLAT--GGHDKKAVLWCTESFT-------- 588 (655)
Q Consensus 530 ----------~d~~~~l~d~~~~-~t~~~v~~l~gH~~~V~sl~fSpdG~lLaS--gs~DgtVrIWDl~t~~-------- 588 (655)
.+..+++|+..+. .... .+.. ....++|++ .+++. |+.|++|+|||+.++.
T Consensus 107 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~---~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~ 178 (355)
T 3vu4_A 107 FLSREFIVVSYGDVISVFKFGNPWKRIT---DDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQG 178 (355)
T ss_dssp EECSSEEEEEETTEEEEEESSTTCCBSS---CCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC----------
T ss_pred EEcCCEEEEEEcCEEEEEECCCCceeeE---Eecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCcccccccc
Confidence 0112233433332 1111 1111 334455665 55555 5889999999999865
Q ss_pred --------EEEEecccCCCEEEEEEcCCCCEEEEEeCCCc-EEEEECCCCeEEEEEe-c-ccceeeeeceeeEEEecC
Q 006229 589 --------VKSTLEEHTQWITDVRFSPSLSRLATSSADRT-VRVWDTENVRKLTFIC-C-YKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 589 --------~l~tl~gH~~~ItsVafsPdg~~LaSgS~Dgt-VrVWDl~tg~~v~~l~-~-~~~~v~s~~Vss~~F~P~ 655 (655)
++.++.+|...|++|+|+|++++|+|||.|++ |+|||+++++++..+. + |.. .|.+++|+|+
T Consensus 179 ~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~-----~v~~~~~s~~ 251 (355)
T 3vu4_A 179 VQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRA-----DVVDMKWSTD 251 (355)
T ss_dssp --------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCS-----CEEEEEECTT
T ss_pred ccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCC-----cEEEEEECCC
Confidence 27789999999999999999999999999998 9999999999999998 3 543 4668888885
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.8e-14 Score=167.78 Aligned_cols=163 Identities=15% Similarity=0.218 Sum_probs=127.7
Q ss_pred CCceeccCCCCceEEEEecCCCC----------cccccCcccCCC--CcEEEeccCCCcEEEEecCCCCCCCCccccccc
Q 006229 471 RPTLQHNGASSKSLLMFGSDGMG----------SLTSAPNQLTDM--DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAE 538 (655)
Q Consensus 471 ~~~~~~s~S~d~s~l~ws~dg~~----------~lasss~~l~~~--~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d 538 (655)
+...+.+++.++.+.+|+..+.. .-.+....+.+. +.++++|+.|++|++|+...+
T Consensus 20 dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~------------ 87 (753)
T 3jro_A 20 YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG------------ 87 (753)
T ss_dssp SSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETT------------
T ss_pred CCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCC------------
Confidence 34567788889999999886311 111222234443 689999999999999965433
Q ss_pred cCCCceeeeEEeecCCCCCeeEEEEcCC--CCEEEEEeCCCcEEEEeCCCC--eEEEEecccCCCEEEEEEcC-------
Q 006229 539 VGKGFTFTEFQLIPASTSKVESCHFSPD--GKLLATGGHDKKAVLWCTESF--TVKSTLEEHTQWITDVRFSP------- 607 (655)
Q Consensus 539 ~~~~~t~~~v~~l~gH~~~V~sl~fSpd--G~lLaSgs~DgtVrIWDl~t~--~~l~tl~gH~~~ItsVafsP------- 607 (655)
....+..+.+|...|++++|+|+ +.+|++|+.|++|+|||++++ .....+.+|...|++++|+|
T Consensus 88 -----~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~ 162 (753)
T 3jro_A 88 -----RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (753)
T ss_dssp -----EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-----
T ss_pred -----cccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccc
Confidence 13466778899999999999999 999999999999999999877 34556789999999999999
Q ss_pred ------CCCEEEEEeCCCcEEEEECCCC----eEEEEEecccceeeeeceeeEEEecC
Q 006229 608 ------SLSRLATSSADRTVRVWDTENV----RKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 608 ------dg~~LaSgS~DgtVrVWDl~tg----~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
++.+|++|+.||+|+|||++++ .++..+.+|... |.+++|+|+
T Consensus 163 ~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~-----V~~l~~sp~ 215 (753)
T 3jro_A 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW-----VRDVAWSPT 215 (753)
T ss_dssp ----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC-----EEEEEECCC
T ss_pred ccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCc-----EEEEEeccC
Confidence 5899999999999999999877 555666666543 557778774
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.8e-14 Score=147.90 Aligned_cols=165 Identities=9% Similarity=0.116 Sum_probs=118.8
Q ss_pred CceeccCCCCceEEEEecCCCC-ccc--------ccCc------ccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccc
Q 006229 472 PTLQHNGASSKSLLMFGSDGMG-SLT--------SAPN------QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRS 536 (655)
Q Consensus 472 ~~~~~s~S~d~s~l~ws~dg~~-~la--------sss~------~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l 536 (655)
...+.+++.++.+.+|+..... .+. +... .+.+.+.+|++|+.|++|++|+...+.
T Consensus 80 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~--------- 150 (357)
T 3i2n_A 80 QRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKD--------- 150 (357)
T ss_dssp TCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCS---------
T ss_pred CceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCC---------
Confidence 3567777888899999887533 110 0111 235566789999999999999665441
Q ss_pred cccCCCceeeeEEeecCCC----CCeeEEE----EcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcC-
Q 006229 537 AEVGKGFTFTEFQLIPAST----SKVESCH----FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP- 607 (655)
Q Consensus 537 ~d~~~~~t~~~v~~l~gH~----~~V~sl~----fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsP- 607 (655)
..+..+..|. ..|.+++ |++++++|++|+.|+.|++||+++++++. ...|...|++++|+|
T Consensus 151 ---------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~ 220 (357)
T 3i2n_A 151 ---------DPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRW-ETNIKNGVCSLEFDRK 220 (357)
T ss_dssp ---------SCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEESCS
T ss_pred ---------CcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceee-ecCCCCceEEEEcCCC
Confidence 1223333333 3788888 78899999999999999999999998754 467999999999999
Q ss_pred --CCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 608 --SLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 608 --dg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
++.+|++++.|+.|+|||+++++++..+.......+...|.+++|+|+
T Consensus 221 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 270 (357)
T 3i2n_A 221 DISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQ 270 (357)
T ss_dssp SSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETT
T ss_pred CCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCC
Confidence 999999999999999999998766555541111122344667888874
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.57 E-value=6.5e-14 Score=151.80 Aligned_cols=157 Identities=13% Similarity=0.046 Sum_probs=117.5
Q ss_pred ceeccCCCCceEEEEecCCCCcc------------cccCcccCCC---CcEEEeccCCCcEEEEecCCCCCCCCcccccc
Q 006229 473 TLQHNGASSKSLLMFGSDGMGSL------------TSAPNQLTDM---DRFVDDGSLDDNVESFLSPDDADPRDRVGRSA 537 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~~l------------asss~~l~~~---~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~ 537 (655)
..+.+++.+..+..|+....... .+....+.+. +.+|++|+.|++|++|+...+
T Consensus 162 ~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~----------- 230 (450)
T 2vdu_B 162 TTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQC----------- 230 (450)
T ss_dssp SEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCT-----------
T ss_pred CEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCC-----------
Confidence 45555566666777765432111 1112234444 679999999999999976544
Q ss_pred ccCCCceeeeEEe-ecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccc--------------------
Q 006229 538 EVGKGFTFTEFQL-IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH-------------------- 596 (655)
Q Consensus 538 d~~~~~t~~~v~~-l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH-------------------- 596 (655)
..+.. +.+|...|.+++|+ ++++|++|+.|++|+|||+++++++.++..|
T Consensus 231 --------~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (450)
T 2vdu_B 231 --------FIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNE 301 (450)
T ss_dssp --------TCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC-------
T ss_pred --------ceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhccccccccccc
Confidence 22333 56899999999999 9999999999999999999999998888633
Q ss_pred -----CCCEEEEEEcCCCCEEEEEe-CCCcEEEEEC--CCC---eEEEEEecccceeeeeceeeEEEecC
Q 006229 597 -----TQWITDVRFSPSLSRLATSS-ADRTVRVWDT--ENV---RKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 597 -----~~~ItsVafsPdg~~LaSgS-~DgtVrVWDl--~tg---~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
...|.+|+|+|++++|++++ .|+.|+|||+ .++ .++..+..+. .+.+++|+|+
T Consensus 302 ~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~~------~v~~~~~~~~ 365 (450)
T 2vdu_B 302 NNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFPY------NVISLSAHND 365 (450)
T ss_dssp ---CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECSS------CEEEEEEETT
T ss_pred ccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccCC------ceEEEEecCC
Confidence 45799999999999999999 8999999999 555 6666776652 2456777763
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.7e-14 Score=166.31 Aligned_cols=126 Identities=19% Similarity=0.250 Sum_probs=106.1
Q ss_pred cEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCC--CCEEEEEeCCCcEEEEeC
Q 006229 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD--GKLLATGGHDKKAVLWCT 584 (655)
Q Consensus 507 ~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpd--G~lLaSgs~DgtVrIWDl 584 (655)
.++++|+.|++|++|+...+ +...+..+.+|.+.|++++|+++ +.+|++|+.|++|+|||+
T Consensus 22 ~~latg~~dg~I~vwd~~~~-----------------~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~ 84 (753)
T 3jro_A 22 KRLATCSSDKTIKIFEVEGE-----------------THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKE 84 (753)
T ss_dssp CCEEEEETTTEEEEEEEETT-----------------EEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEE
T ss_pred CeEEEEECCCcEEEEecCCC-----------------CCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEEC
Confidence 47899999999999965422 23567788999999999999997 999999999999999999
Q ss_pred CCCe--EEEEecccCCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCeE--EEEEecccceeeeeceeeEEEec
Q 006229 585 ESFT--VKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENVRK--LTFICCYKCIFVSTAIGSCFFAP 654 (655)
Q Consensus 585 ~t~~--~l~tl~gH~~~ItsVafsPd--g~~LaSgS~DgtVrVWDl~tg~~--v~~l~~~~~~v~s~~Vss~~F~P 654 (655)
.+++ .+..+.+|...|++|+|+|+ +.+|++|+.||+|+|||++++.. ...+..|.. .|.++.|+|
T Consensus 85 ~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~-----~v~~l~~~p 155 (753)
T 3jro_A 85 ENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI-----GVNSASWAP 155 (753)
T ss_dssp ETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSS-----CEEEEEECC
T ss_pred CCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCC-----ceEEEEecC
Confidence 9987 77888999999999999999 99999999999999999998733 344444443 355677776
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.57 E-value=5.2e-14 Score=151.64 Aligned_cols=127 Identities=19% Similarity=0.238 Sum_probs=101.1
Q ss_pred CcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 006229 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (655)
Q Consensus 506 ~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~ 585 (655)
+.++++|+.|++|++|+..++ +.+..+.+|...|.++.++ +++|++|+.|++|++||++
T Consensus 289 ~~~l~~~~~d~~i~i~d~~~~-------------------~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~ 347 (445)
T 2ovr_B 289 GIHVVSGSLDTSIRVWDVETG-------------------NCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIK 347 (445)
T ss_dssp SSEEEEEETTSCEEEEETTTC-------------------CEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETT
T ss_pred CCEEEEEeCCCeEEEEECCCC-------------------CEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECC
Confidence 345666666666666644332 4667788999999998885 7799999999999999999
Q ss_pred CCeEEEEecc---cCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 586 SFTVKSTLEE---HTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 586 t~~~l~tl~g---H~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
+++++.++.+ |...|++++|+ +.+|++|+.||+|+|||+++++.+..+...........|.+++|+|+
T Consensus 348 ~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 418 (445)
T 2ovr_B 348 TGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNT 418 (445)
T ss_dssp TCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSS
T ss_pred CCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCC
Confidence 9999999986 88999999996 68999999999999999999999988843322223445677888875
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.57 E-value=6.3e-15 Score=157.75 Aligned_cols=180 Identities=8% Similarity=0.032 Sum_probs=109.4
Q ss_pred CCceeccCCCCceEEEEecCCCCcc--------cccCcccCCCC-cEEEeccCCCcEEEEecCCCCCCCCccc-----cc
Q 006229 471 RPTLQHNGASSKSLLMFGSDGMGSL--------TSAPNQLTDMD-RFVDDGSLDDNVESFLSPDDADPRDRVG-----RS 536 (655)
Q Consensus 471 ~~~~~~s~S~d~s~l~ws~dg~~~l--------asss~~l~~~~-~~LasGS~D~tV~vW~s~d~~d~~d~~~-----~l 536 (655)
+..++++++.|+++.+|+....... .+....+.+.+ .+|++|+.|++|++|+...+........ ..
T Consensus 155 d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~ 234 (393)
T 4gq1_A 155 AEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNP 234 (393)
T ss_dssp EEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCC
T ss_pred CCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccc
Confidence 3468889999999999997543211 11223455554 5799999999999998876642211110 00
Q ss_pred ccc-CCCceeeeEEeecCCCCCeeEEEEc-CCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcC-------
Q 006229 537 AEV-GKGFTFTEFQLIPASTSKVESCHFS-PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP------- 607 (655)
Q Consensus 537 ~d~-~~~~t~~~v~~l~gH~~~V~sl~fS-pdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsP------- 607 (655)
+.. .............+|...|.++.|+ +||+.|++++.|++|+|||+.+++....+.+|...+..+.+.|
T Consensus 235 ~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 314 (393)
T 4gq1_A 235 WLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISL 314 (393)
T ss_dssp CSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECS
T ss_pred eEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccc
Confidence 000 0001111223345789999999997 6999999999999999999999888888877777666655444
Q ss_pred -------------CCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 608 -------------SLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 608 -------------dg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
++.++++|+.|++|+|||+.++.++..+..|.. .|.+++|+||
T Consensus 315 ~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~-----~V~svafspd 370 (393)
T 4gq1_A 315 FPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGM-----PIVDFCWHQD 370 (393)
T ss_dssp SCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSS-----CEEEEEECTT
T ss_pred cCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCC-----cEEEEEEcCC
Confidence 334678889999999999999998887776654 4668999996
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.56 E-value=5.4e-14 Score=158.77 Aligned_cols=156 Identities=11% Similarity=0.017 Sum_probs=117.8
Q ss_pred CCCCceeccCCCCceEEEEecCC------CCcc----cccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccc
Q 006229 469 ISRPTLQHNGASSKSLLMFGSDG------MGSL----TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAE 538 (655)
Q Consensus 469 ~s~~~~~~s~S~d~s~l~ws~dg------~~~l----asss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d 538 (655)
++++..+++++.++.+++|+.++ +... .+....+.+.+++|++|+.|++|++|+..++..
T Consensus 94 SPdG~~LAs~s~dg~V~iwd~~~~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l---------- 163 (588)
T 2j04_A 94 SPIDDWMAVLSNNGNVSVFKDNKMLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSE---------- 163 (588)
T ss_dssp CSSSSCEEEEETTSCEEEEETTEEEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTT----------
T ss_pred CCCCCEEEEEeCCCcEEEEeCCceeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCcc----------
Confidence 45667888888999999998322 2111 233456788899999999999999997655410
Q ss_pred cCCCceeeeEEee----cCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE---EEEe-cccCCCEEEEEEcCCCC
Q 006229 539 VGKGFTFTEFQLI----PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV---KSTL-EEHTQWITDVRFSPSLS 610 (655)
Q Consensus 539 ~~~~~t~~~v~~l----~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~---l~tl-~gH~~~ItsVafsPdg~ 610 (655)
....+-.+.++ .+|.+.|.+|+|+||| |++++.|++|++||+.+... ..++ .+|...|.+|+|+ +.
T Consensus 164 --~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~ 237 (588)
T 2j04_A 164 --NTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DY 237 (588)
T ss_dssp --TCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TT
T ss_pred --ccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CC
Confidence 00112234554 6788899999999999 88899999999999988773 4567 4899999999999 68
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEEecccce
Q 006229 611 RLATSSADRTVRVWDTENVRKLTFICCYKCI 641 (655)
Q Consensus 611 ~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~ 641 (655)
+||+++ |++|+|||+.++.......+|...
T Consensus 238 ~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~ 267 (588)
T 2j04_A 238 KVVLTC-PGYVHKIDLKNYSISSLKTGSLEN 267 (588)
T ss_dssp EEEEEC-SSEEEEEETTTTEEEEEECSCCSC
T ss_pred EEEEEe-CCeEEEEECCCCeEEEEEcCCCce
Confidence 999998 799999999988774444355443
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-14 Score=148.51 Aligned_cols=137 Identities=12% Similarity=-0.011 Sum_probs=108.5
Q ss_pred CCceEEEEecCCCCcccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCee
Q 006229 480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE 559 (655)
Q Consensus 480 ~d~s~l~ws~dg~~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~ 559 (655)
.....+.|++++. +|++++.|+.|++|+...+. .......+.+|...|.
T Consensus 12 ~~v~~~~~s~~~~---------------~l~~~~~d~~v~iw~~~~~~----------------~~~~~~~~~~~~~~v~ 60 (342)
T 1yfq_A 12 DYISDIKIIPSKS---------------LLLITSWDGSLTVYKFDIQA----------------KNVDLLQSLRYKHPLL 60 (342)
T ss_dssp SCEEEEEEEGGGT---------------EEEEEETTSEEEEEEEETTT----------------TEEEEEEEEECSSCEE
T ss_pred CcEEEEEEcCCCC---------------EEEEEcCCCeEEEEEeCCCC----------------ccccceeeeecCCceE
Confidence 3456777777544 78899999999999654431 1123445568999999
Q ss_pred EEEEcCCCC-EEEEEeCCCcEEEEeC-CCCeEEEEecc--cCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-------
Q 006229 560 SCHFSPDGK-LLATGGHDKKAVLWCT-ESFTVKSTLEE--HTQWITDVRFSPSLSRLATSSADRTVRVWDTEN------- 628 (655)
Q Consensus 560 sl~fSpdG~-lLaSgs~DgtVrIWDl-~t~~~l~tl~g--H~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~t------- 628 (655)
+++|+|+++ +|++|+.|+.|++||+ .+++. ..+.+ |...|++++|+| +.+|++++.|++|++||+++
T Consensus 61 ~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~ 138 (342)
T 1yfq_A 61 CCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIA 138 (342)
T ss_dssp EEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEE
T ss_pred EEEECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEccccccccccc
Confidence 999999999 9999999999999999 87765 67888 999999999999 99999999999999999987
Q ss_pred --CeEEEEEecccceeeeeceeeEEEecC
Q 006229 629 --VRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 629 --g~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
++++..+. + ...+.+++|+|+
T Consensus 139 ~~~~~~~~~~-~-----~~~v~~~~~~~~ 161 (342)
T 1yfq_A 139 VKNLNSNNTK-V-----KNKIFTMDTNSS 161 (342)
T ss_dssp EEESCSSSSS-S-----CCCEEEEEECSS
T ss_pred ccCCeeeEEe-e-----CCceEEEEecCC
Confidence 55554443 2 234556777764
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.44 E-value=4e-12 Score=133.33 Aligned_cols=155 Identities=16% Similarity=0.153 Sum_probs=114.7
Q ss_pred eeccCCCCceEEEEecCCCCcc-------cccCcccCCCCcEE-EeccCCCcEEEEecCCCCCCCCccccccccCCCcee
Q 006229 474 LQHNGASSKSLLMFGSDGMGSL-------TSAPNQLTDMDRFV-DDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTF 545 (655)
Q Consensus 474 ~~~s~S~d~s~l~ws~dg~~~l-------asss~~l~~~~~~L-asGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~ 545 (655)
+..+++.++.+.+|+.+....+ ......+.+.++++ ++++.|++|++|+..++
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~------------------- 64 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATN------------------- 64 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT-------------------
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCC-------------------
Confidence 4456667788888887652111 11222445555554 67778999999965443
Q ss_pred eeEEeecCCCCCeeEEEEcCCCCEEEE-EeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEE-EEEeCCCcEEE
Q 006229 546 TEFQLIPASTSKVESCHFSPDGKLLAT-GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRV 623 (655)
Q Consensus 546 ~~v~~l~gH~~~V~sl~fSpdG~lLaS-gs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~L-aSgS~DgtVrV 623 (655)
+.+..+..+. .|.+++|+|++++|+. ++.|++|++||+.+++.+..+..| ..+.+++|+|++++| ++++.|+.|++
T Consensus 65 ~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~ 142 (391)
T 1l0q_A 65 NVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSV 142 (391)
T ss_dssp EEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred eEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEE
Confidence 3444555554 8999999999997754 556799999999999998888754 478999999999987 78888999999
Q ss_pred EECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 624 WDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 624 WDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
||+++++++..+..+.. +.+++|+|+
T Consensus 143 ~d~~~~~~~~~~~~~~~------~~~~~~~~d 168 (391)
T 1l0q_A 143 INTVTKAVINTVSVGRS------PKGIAVTPD 168 (391)
T ss_dssp EETTTTEEEEEEECCSS------EEEEEECTT
T ss_pred EECCCCcEEEEEecCCC------cceEEECCC
Confidence 99999999988876543 345667764
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.43 E-value=3.5e-13 Score=147.43 Aligned_cols=98 Identities=16% Similarity=0.225 Sum_probs=82.8
Q ss_pred CCCCCeeEEEEcCCCCEEE----EEeCCCcEEEEeCCCC--------e---EEEEecccCCCEEEEEEcCC-CCEEEEEe
Q 006229 553 ASTSKVESCHFSPDGKLLA----TGGHDKKAVLWCTESF--------T---VKSTLEEHTQWITDVRFSPS-LSRLATSS 616 (655)
Q Consensus 553 gH~~~V~sl~fSpdG~lLa----Sgs~DgtVrIWDl~t~--------~---~l~tl~gH~~~ItsVafsPd-g~~LaSgS 616 (655)
.|...|.+|+|+|+|++|+ +|+.|++|+|||++++ + .+..+.+|...|++|+|+|+ +.+|++++
T Consensus 90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s 169 (434)
T 2oit_A 90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL 169 (434)
T ss_dssp CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence 4567899999999999999 8889999999998654 1 35677889999999999998 88999999
Q ss_pred CCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 617 ADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 617 ~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
.||+|+|||++++.++.....|.. .|.+++|+|+
T Consensus 170 ~Dg~v~iwD~~~~~~~~~~~~~~~-----~v~~v~wspd 203 (434)
T 2oit_A 170 ADGSIAVLQVTETVKVCATLPSTV-----AVTSVCWSPK 203 (434)
T ss_dssp TTSCEEEEEESSSEEEEEEECGGG-----CEEEEEECTT
T ss_pred CCCeEEEEEcCCCcceeeccCCCC-----ceeEEEEcCC
Confidence 999999999999977766655543 4567888885
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.3e-12 Score=137.08 Aligned_cols=135 Identities=9% Similarity=0.085 Sum_probs=106.8
Q ss_pred ccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEE
Q 006229 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV 580 (655)
Q Consensus 501 ~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVr 580 (655)
.+.+.+.++++++.|++|++|+..++.. . .......+.+|...|.+++|+++++++++++.|++|+
T Consensus 129 ~~s~~~~~~~~~~~~~~i~~~d~~~g~~--------~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~ 194 (433)
T 3bws_A 129 RFIDNTRLAIPLLEDEGMDVLDINSGQT--------V------RLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVH 194 (433)
T ss_dssp EESSSSEEEEEBTTSSSEEEEETTTCCE--------E------EECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEE
T ss_pred EEeCCCeEEEEeCCCCeEEEEECCCCeE--------e------eecCcccccccCCceeEEEEcCCCEEEEEECCCCEEE
Confidence 3444556788888899999997655410 0 0001114568999999999999999999999999999
Q ss_pred EEeCCCCeEEEEecccCCCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 581 LWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 581 IWDl~t~~~l~tl~gH~~~ItsVafsPdg~~La-SgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
+||+++++++.++..|...|.+++|+|++++|+ +++.|++|++||+++++++..+..+.. +.+++|+|+
T Consensus 195 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~------~~~~~~~~~ 264 (433)
T 3bws_A 195 VFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGL------PRGLLLSKD 264 (433)
T ss_dssp EEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSE------EEEEEECTT
T ss_pred EEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCC------ceEEEEcCC
Confidence 999999999999999999999999999999885 455899999999999998877765432 456666664
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.41 E-value=4.6e-12 Score=132.92 Aligned_cols=122 Identities=20% Similarity=0.146 Sum_probs=99.3
Q ss_pred cEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEE-EEEeCCCcEEEEeCC
Q 006229 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLL-ATGGHDKKAVLWCTE 585 (655)
Q Consensus 507 ~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lL-aSgs~DgtVrIWDl~ 585 (655)
.++++++.|++|++|+...+ +.+..+..|. .|.+++|+|+|++| ++++.|++|++||+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~-------------------~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~ 62 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSN-------------------KVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTA 62 (391)
T ss_dssp EEEEEETTTTEEEEEETTTT-------------------EEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred EEEEEcCCCCEEEEEECCCC-------------------eEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECC
Confidence 46788999999999966544 4555666664 58999999999976 677799999999999
Q ss_pred CCeEEEEecccCCCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 586 SFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 586 t~~~l~tl~gH~~~ItsVafsPdg~~La-SgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
+++++..+..|. .|++++|+|++++|+ +++.|++|++||+.+++.+..+..+.. +.+++|+|+
T Consensus 63 ~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~~s~d 126 (391)
T 1l0q_A 63 TNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKS------PLGLALSPD 126 (391)
T ss_dssp TTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSS------EEEEEECTT
T ss_pred CCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCC------cceEEECCC
Confidence 999999888665 999999999999875 455679999999999999888876543 356777764
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.41 E-value=9.7e-12 Score=132.27 Aligned_cols=158 Identities=6% Similarity=-0.040 Sum_probs=119.6
Q ss_pred CceeccCCCCceEEEEecCCCCccc-------------ccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccc
Q 006229 472 PTLQHNGASSKSLLMFGSDGMGSLT-------------SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAE 538 (655)
Q Consensus 472 ~~~~~s~S~d~s~l~ws~dg~~~la-------------sss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d 538 (655)
..+..+++.+..+.+|+........ +....+.+.+.++++++.|+.|++|+...+
T Consensus 134 ~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~------------ 201 (433)
T 3bws_A 134 TRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTL------------ 201 (433)
T ss_dssp SEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTC------------
T ss_pred CeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCc------------
Confidence 3566667778889999987532221 111234556678899999999999965433
Q ss_pred cCCCceeeeEEeecCCCCCeeEEEEcCCCCEEE-EEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEe-
Q 006229 539 VGKGFTFTEFQLIPASTSKVESCHFSPDGKLLA-TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS- 616 (655)
Q Consensus 539 ~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLa-Sgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS- 616 (655)
+.+..+..|...|.+++|+|++++|+ +++.|++|++||+++++.+..+..+ ..+.+++|+|++++|++++
T Consensus 202 -------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~ 273 (433)
T 3bws_A 202 -------AYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQF 273 (433)
T ss_dssp -------CEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEE
T ss_pred -------eEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEEC
Confidence 35566678889999999999999775 5558999999999999999888765 4599999999999999998
Q ss_pred -------CCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 617 -------ADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 617 -------~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
.|+.|++||+++++.+..+... ..+.+++|+|+
T Consensus 274 ~~~~~~~~dg~i~~~d~~~~~~~~~~~~~------~~~~~~~~~~~ 313 (433)
T 3bws_A 274 SASNQESGGGRLGIYSMDKEKLIDTIGPP------GNKRHIVSGNT 313 (433)
T ss_dssp ESCTTCSCCEEEEEEETTTTEEEEEEEEE------ECEEEEEECSS
T ss_pred CCCccccCCCeEEEEECCCCcEEeeccCC------CCcceEEECCC
Confidence 5899999999999877665322 23446677764
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.25 E-value=1.5e-10 Score=125.07 Aligned_cols=147 Identities=12% Similarity=0.035 Sum_probs=104.1
Q ss_pred ceEEEEecCCCCcc-------cccCcccCCCCcEEEeccCCC---cEEEEecCCCCCCCCccccccccCCCceeeeEEee
Q 006229 482 KSLLMFGSDGMGSL-------TSAPNQLTDMDRFVDDGSLDD---NVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI 551 (655)
Q Consensus 482 ~s~l~ws~dg~~~l-------asss~~l~~~~~~LasGS~D~---tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l 551 (655)
+.+.+|+.++.... .+....+.+.++.|++++.|+ .|++|+..++ + ...+
T Consensus 159 ~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg-------------------~-~~~l 218 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG-------------------A-VRQV 218 (415)
T ss_dssp EEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC-------------------C-EEEE
T ss_pred ceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCC-------------------c-EEEe
Confidence 67788887763211 111224566667788887775 7788855433 1 2245
Q ss_pred cCCCCCeeEEEEcCCCCEEE-EEeCCCc--EEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeC-CC--cEEEEE
Q 006229 552 PASTSKVESCHFSPDGKLLA-TGGHDKK--AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DR--TVRVWD 625 (655)
Q Consensus 552 ~gH~~~V~sl~fSpdG~lLa-Sgs~Dgt--VrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~-Dg--tVrVWD 625 (655)
..|...|.+++|+|||++|+ +++.|+. |++||+.++++ ..+.+|...+++++|+|||++|++++. |+ .|++||
T Consensus 219 ~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d 297 (415)
T 2hqs_A 219 ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVN 297 (415)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred ecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEE
Confidence 56778899999999999777 6766655 99999998876 577889999999999999999998886 45 678889
Q ss_pred CCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 626 TENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 626 l~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
+.+++.. .+..+.. .+.+++|+|+
T Consensus 298 ~~~~~~~-~l~~~~~-----~~~~~~~spd 321 (415)
T 2hqs_A 298 INGGAPQ-RITWEGS-----QNQDADVSSD 321 (415)
T ss_dssp TTSSCCE-ECCCSSS-----EEEEEEECTT
T ss_pred CCCCCEE-EEecCCC-----cccCeEECCC
Confidence 9887643 3333322 2446777775
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.23 E-value=9.3e-11 Score=126.80 Aligned_cols=101 Identities=20% Similarity=0.150 Sum_probs=82.6
Q ss_pred EEeecCCCCCeeEEEEcCCCCEEEEEeCCC---cEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEE-EEeCCCc--E
Q 006229 548 FQLIPASTSKVESCHFSPDGKLLATGGHDK---KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRT--V 621 (655)
Q Consensus 548 v~~l~gH~~~V~sl~fSpdG~lLaSgs~Dg---tVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~La-SgS~Dgt--V 621 (655)
++.+.+|...|.+++|||||++|++++.|+ .|++||++++++. .+..|...|.+++|+|||++|+ +++.|+. |
T Consensus 171 ~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i 249 (415)
T 2hqs_A 171 QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNL 249 (415)
T ss_dssp CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred CEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceE
Confidence 355667888999999999999999999885 9999999998876 5777999999999999999887 7777665 9
Q ss_pred EEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 622 RVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 622 rVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
++||++++++ ..+..+.. .+.+++|+|+
T Consensus 250 ~~~d~~~~~~-~~l~~~~~-----~~~~~~~spd 277 (415)
T 2hqs_A 250 YVMDLASGQI-RQVTDGRS-----NNTEPTWFPD 277 (415)
T ss_dssp EEEETTTCCE-EECCCCSS-----CEEEEEECTT
T ss_pred EEEECCCCCE-EeCcCCCC-----cccceEECCC
Confidence 9999998876 34444432 3557788885
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=4.9e-10 Score=126.11 Aligned_cols=111 Identities=12% Similarity=0.039 Sum_probs=94.1
Q ss_pred cEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC--
Q 006229 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT-- 584 (655)
Q Consensus 507 ~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl-- 584 (655)
.++++++.|++|.+|+...+ +++.++..+.. +.+++|+|||++|++++.|++|++||+
T Consensus 150 ~~~vs~~~d~~V~v~D~~t~-------------------~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~ 209 (543)
T 1nir_A 150 LFSVTLRDAGQIALVDGDSK-------------------KIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWA 209 (543)
T ss_dssp EEEEEEGGGTEEEEEETTTC-------------------CEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTS
T ss_pred EEEEEEcCCCeEEEEECCCc-------------------eEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcC
Confidence 57788889999999965443 45556653323 889999999999999999999999999
Q ss_pred CCCeEEEEecccCCCEEEEEEcC----CCCEEEEEeC-CCcEEEEECCCCeEEEEEecc
Q 006229 585 ESFTVKSTLEEHTQWITDVRFSP----SLSRLATSSA-DRTVRVWDTENVRKLTFICCY 638 (655)
Q Consensus 585 ~t~~~l~tl~gH~~~ItsVafsP----dg~~LaSgS~-DgtVrVWDl~tg~~v~~l~~~ 638 (655)
.+++++.++. +...+.+|+|+| +|++|++++. |++|+|||..+++++.++..+
T Consensus 210 ~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~ 267 (543)
T 1nir_A 210 KEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTR 267 (543)
T ss_dssp SSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECC
T ss_pred CCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeeccc
Confidence 8999999888 555789999999 9999999985 899999999999999988754
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.5e-10 Score=112.71 Aligned_cols=131 Identities=14% Similarity=0.101 Sum_probs=94.4
Q ss_pred cCCCCcEEE-eccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEe-CCCcE
Q 006229 502 LTDMDRFVD-DGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG-HDKKA 579 (655)
Q Consensus 502 l~~~~~~La-sGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs-~DgtV 579 (655)
+.+.+++|+ +++.|+.+++|..... . .....+..|...|.+++|+|+|++|+.++ .|+.+
T Consensus 136 ~spdg~~l~~~~~~~~~~~l~~~~~~--------------~----~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~ 197 (297)
T 2ojh_A 136 WSPDGKSFTYCGIRDQVFDIYSMDID--------------S----GVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQM 197 (297)
T ss_dssp ECTTSSEEEEEEEETTEEEEEEEETT--------------T----CCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred ECCCCCEEEEEECCCCceEEEEEECC--------------C----CcceEcccCCCccccceECCCCCEEEEEecCCCCc
Confidence 344444444 6777888888853211 1 12344556778899999999999887766 59999
Q ss_pred EEEeCC-CCeEEEEecccCCCEEEEEEcCCCCEEEEEeCC-----------CcEEEEECCCCeEEE--EEecccceeeee
Q 006229 580 VLWCTE-SFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-----------RTVRVWDTENVRKLT--FICCYKCIFVST 645 (655)
Q Consensus 580 rIWDl~-t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~D-----------gtVrVWDl~tg~~v~--~l~~~~~~v~s~ 645 (655)
+||+++ .+..+..+..|...+.+++|+|++++|++++.| +.|++||+.+++... .+..+..
T Consensus 198 ~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~----- 272 (297)
T 2ojh_A 198 QIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQG----- 272 (297)
T ss_dssp EEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTT-----
T ss_pred cEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCc-----
Confidence 999986 566777888899999999999999999998876 569999999876533 3323332
Q ss_pred ceeeEEEecC
Q 006229 646 AIGSCFFAPT 655 (655)
Q Consensus 646 ~Vss~~F~P~ 655 (655)
.+.+++|+|+
T Consensus 273 ~~~~~~~spd 282 (297)
T 2ojh_A 273 TMNSPNWSPD 282 (297)
T ss_dssp TSCSCCBCTT
T ss_pred ccccceECCC
Confidence 3445667664
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.13 E-value=4e-10 Score=129.05 Aligned_cols=97 Identities=16% Similarity=0.168 Sum_probs=76.2
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCe--EEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 006229 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTF 634 (655)
Q Consensus 557 ~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~--~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~ 634 (655)
.|.+++|||||++|++++. +.|++||+.++. .+..+..|...|.+++|+|||++|++++. +.|++||+.+++....
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~ 187 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQL 187 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEEC
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEe
Confidence 4889999999999999987 999999999883 44567789899999999999999999984 5999999999877654
Q ss_pred Eecccceeeee-----------ceeeEEEecC
Q 006229 635 ICCYKCIFVST-----------AIGSCFFAPT 655 (655)
Q Consensus 635 l~~~~~~v~s~-----------~Vss~~F~P~ 655 (655)
...+...+... .+.++.|+||
T Consensus 188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpD 219 (741)
T 2ecf_A 188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAPD 219 (741)
T ss_dssp CCCCCSSEEESCCCHHHHHHSCCCCSEEECTT
T ss_pred ccCCccceeccccceeeeeccccccceEECCC
Confidence 44333211111 1467889886
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.11 E-value=9.3e-10 Score=111.99 Aligned_cols=138 Identities=12% Similarity=0.097 Sum_probs=94.1
Q ss_pred cCCCCceEEEEecCCCCc--c--------cccCcccCCCCcEEEeccCC-CcEEEEecCCCCCCCCccccccccCCCcee
Q 006229 477 NGASSKSLLMFGSDGMGS--L--------TSAPNQLTDMDRFVDDGSLD-DNVESFLSPDDADPRDRVGRSAEVGKGFTF 545 (655)
Q Consensus 477 s~S~d~s~l~ws~dg~~~--l--------asss~~l~~~~~~LasGS~D-~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~ 545 (655)
+.+.++.+.+|+.+..+. . ......+.+.+++|++++.+ +.|.+|..... . ...
T Consensus 10 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~--------------~-~~~ 74 (343)
T 1ri6_A 10 ASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPD--------------D-GAL 74 (343)
T ss_dssp EEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTT--------------T-CCE
T ss_pred eCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCC--------------C-Cce
Confidence 335577888887753221 1 11122455666777766665 89999855311 0 112
Q ss_pred eeEEeecCCCCCeeEEEEcCCCCEEEEEeC-CCcEEEEeC---CCCeEEEEecccCCCEEEEEEcCCCCEEEEEe-CCCc
Q 006229 546 TEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLWCT---ESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRT 620 (655)
Q Consensus 546 ~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~-DgtVrIWDl---~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS-~Dgt 620 (655)
..+..+..+. .+.+++|+|+|++|++++. |+.|++||+ .+.+.+..+..+ ..+.+++|+|++++|++++ .|+.
T Consensus 75 ~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~ 152 (343)
T 1ri6_A 75 TFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDR 152 (343)
T ss_dssp EEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTE
T ss_pred eeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCE
Confidence 3444444444 7899999999998877665 889999999 444556666544 4589999999999988888 8999
Q ss_pred EEEEECCC-CeE
Q 006229 621 VRVWDTEN-VRK 631 (655)
Q Consensus 621 VrVWDl~t-g~~ 631 (655)
|++||+.+ ++.
T Consensus 153 v~~~d~~~~~~~ 164 (343)
T 1ri6_A 153 ICLFTVSDDGHL 164 (343)
T ss_dssp EEEEEECTTSCE
T ss_pred EEEEEecCCCce
Confidence 99999987 644
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.6e-09 Score=110.79 Aligned_cols=123 Identities=11% Similarity=-0.023 Sum_probs=94.9
Q ss_pred cEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeC-CCcEEEEeCC
Q 006229 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLWCTE 585 (655)
Q Consensus 507 ~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~-DgtVrIWDl~ 585 (655)
..+++++.+++|.+|+..++ +.+..+..+...+ +++|+|||++|++++. ++.|++||+.
T Consensus 11 ~~~v~~~~~~~v~~~d~~~~-------------------~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~ 70 (331)
T 3u4y_A 11 FGIVVEQHLRRISFFSTDTL-------------------EILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQ 70 (331)
T ss_dssp EEEEEEGGGTEEEEEETTTC-------------------CEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECS
T ss_pred EEEEEecCCCeEEEEeCccc-------------------ceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECC
Confidence 55778888999999966544 2334444455566 9999999996666665 8999999999
Q ss_pred CCeE-EEEecccCCCEEEEEEcCCCCEEEEEeCCC---cEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 586 SFTV-KSTLEEHTQWITDVRFSPSLSRLATSSADR---TVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 586 t~~~-l~tl~gH~~~ItsVafsPdg~~LaSgS~Dg---tVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
+++. ...+..+...+.+++|+|++++|+++..++ .|++||+.+++.+..+..+.. ..+++|+|+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~------~~~~~~spd 138 (331)
T 3u4y_A 71 LEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYD------AVGIAISPN 138 (331)
T ss_dssp SSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTT------EEEEEECTT
T ss_pred CCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCC------ccceEECCC
Confidence 9987 777877777777799999999999555553 899999999998887765443 246777775
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.09 E-value=3.4e-10 Score=129.08 Aligned_cols=103 Identities=13% Similarity=0.040 Sum_probs=78.9
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCE------------------EEEEEcCCCCEEE
Q 006229 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWI------------------TDVRFSPSLSRLA 613 (655)
Q Consensus 552 ~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~I------------------tsVafsPdg~~La 613 (655)
.+|...|.+++|||||++|+.++. +.|++||+.++++......+...| .+++|+|||++|+
T Consensus 110 ~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la 188 (723)
T 1xfd_A 110 EVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLA 188 (723)
T ss_dssp TCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEE
T ss_pred ccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEE
Confidence 456666899999999999999886 799999999988877666554433 7899999999999
Q ss_pred EEeCCC----------------------------------cEEEEECCCCeEEEEEeccccee-eeeceeeEEEecC
Q 006229 614 TSSADR----------------------------------TVRVWDTENVRKLTFICCYKCIF-VSTAIGSCFFAPT 655 (655)
Q Consensus 614 SgS~Dg----------------------------------tVrVWDl~tg~~v~~l~~~~~~v-~s~~Vss~~F~P~ 655 (655)
+++.|+ +|++||+.++++...+..+.... ....+.+++|+||
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpD 265 (723)
T 1xfd_A 189 YAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATS 265 (723)
T ss_dssp EEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSS
T ss_pred EEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCC
Confidence 998654 79999999888766665542111 1233567888886
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=5.9e-09 Score=106.90 Aligned_cols=103 Identities=17% Similarity=0.160 Sum_probs=82.7
Q ss_pred eeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecc----cCCCEEEEEEcCCCCEEEEEeC-CCc
Q 006229 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE----HTQWITDVRFSPSLSRLATSSA-DRT 620 (655)
Q Consensus 546 ~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~g----H~~~ItsVafsPdg~~LaSgS~-Dgt 620 (655)
+.+..+..+...+.+++|+|||++|++++.|+.|.+||+.+++.+..+.. +...+.+++|+|++++|+.++. ++.
T Consensus 175 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~ 254 (353)
T 3vgz_A 175 KLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAE 254 (353)
T ss_dssp EEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSE
T ss_pred ceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCE
Confidence 34455554556688999999999999999999999999999998887763 6677899999999998777665 589
Q ss_pred EEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 621 VRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 621 VrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
|.+||+.+++.+..+..+.. ..++|+|+
T Consensus 255 v~~~d~~~~~~~~~~~~~~~-------~~~~~s~d 282 (353)
T 3vgz_A 255 VLVVDTRNGNILAKVAAPES-------LAVLFNPA 282 (353)
T ss_dssp EEEEETTTCCEEEEEECSSC-------CCEEEETT
T ss_pred EEEEECCCCcEEEEEEcCCC-------ceEEECCC
Confidence 99999999998887765432 24566654
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=4.6e-09 Score=107.68 Aligned_cols=155 Identities=8% Similarity=0.008 Sum_probs=105.6
Q ss_pred CceEEEEecCCCCccc-------ccCcccCCCCc-EEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeec
Q 006229 481 SKSLLMFGSDGMGSLT-------SAPNQLTDMDR-FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP 552 (655)
Q Consensus 481 d~s~l~ws~dg~~~la-------sss~~l~~~~~-~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~ 552 (655)
+..+.+|++....... .....+.+.++ +++++..++.|.+|+..++ +.+..+.
T Consensus 68 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~-------------------~~~~~~~ 128 (353)
T 3vgz_A 68 GGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTG-------------------EVKGRLV 128 (353)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTC-------------------CEEEEEE
T ss_pred CccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCC-------------------eeEEEEe
Confidence 4566777665422111 11113334444 4455566788888865544 2222333
Q ss_pred CCCC---------CeeEEEEcCCCCEEEEEe--CCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcE
Q 006229 553 ASTS---------KVESCHFSPDGKLLATGG--HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTV 621 (655)
Q Consensus 553 gH~~---------~V~sl~fSpdG~lLaSgs--~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtV 621 (655)
.+.. .+.+++|+|+|++|++++ .++.|.+||+.+++.+..+..+...+.+++|+|++++|++++.|+.|
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i 208 (353)
T 3vgz_A 129 LDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGEL 208 (353)
T ss_dssp SCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEE
T ss_pred cCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeE
Confidence 2221 268899999999777776 47899999999999999988777779999999999999999999999
Q ss_pred EEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 622 RVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 622 rVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
.+||+.+++.+..+...... ....+.+++|+|+
T Consensus 209 ~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~s~d 241 (353)
T 3vgz_A 209 ITIDTADNKILSRKKLLDDG-KEHFFINISLDTA 241 (353)
T ss_dssp EEEETTTTEEEEEEECCCSS-SCCCEEEEEEETT
T ss_pred EEEECCCCeEEEEEEcCCCC-CCcccceEEECCC
Confidence 99999999988777652211 1122445677764
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=2e-09 Score=129.61 Aligned_cols=100 Identities=13% Similarity=0.043 Sum_probs=84.3
Q ss_pred eecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCC----------
Q 006229 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR---------- 619 (655)
Q Consensus 550 ~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~Dg---------- 619 (655)
.+.+|...|.+++|||||++|++++.|+.|++||+.++++...+.+|...|.+++|+|||++|++++.++
T Consensus 373 ~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~ 452 (1045)
T 1k32_A 373 KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQ 452 (1045)
T ss_dssp ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEE
T ss_pred EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCC
Confidence 3447888899999999999999999999999999999999888889999999999999999999888754
Q ss_pred cEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 620 TVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 620 tVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
.|+|||+.+++ +..+..+... +.+++|+|+
T Consensus 453 ~i~l~d~~~g~-~~~l~~~~~~-----~~~~~~spd 482 (1045)
T 1k32_A 453 AIHVYDMEGRK-IFAATTENSH-----DYAPAFDAD 482 (1045)
T ss_dssp EEEEEETTTTE-EEECSCSSSB-----EEEEEECTT
T ss_pred eEEEEECCCCc-EEEeeCCCcc-----cCCceEcCC
Confidence 89999999887 5555555332 335677775
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.01 E-value=8.2e-09 Score=101.78 Aligned_cols=151 Identities=14% Similarity=0.128 Sum_probs=99.3
Q ss_pred CceEEEEecCC-CCcc---------cccCcccCCCCcEEEecc--CCCcEEEEecCCCCCCCCccccccccCCCceeeeE
Q 006229 481 SKSLLMFGSDG-MGSL---------TSAPNQLTDMDRFVDDGS--LDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEF 548 (655)
Q Consensus 481 d~s~l~ws~dg-~~~l---------asss~~l~~~~~~LasGS--~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v 548 (655)
+..+.+|+.++ .... .+....+.+.+++|++++ .++.+++|..... .. ..
T Consensus 61 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~--------------~~----~~ 122 (297)
T 2ojh_A 61 EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPST--------------GG----TP 122 (297)
T ss_dssp TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETT--------------CC----CC
T ss_pred CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECC--------------CC----ce
Confidence 55777887765 2211 111234455666777776 3456666643211 11 12
Q ss_pred EeecCCCCCeeEEEEcCCCCEEE-EEeCCCcEEEEeCC-CCeEEEEecccCCCEEEEEEcCCCCEEEEEe-CCCcEEEEE
Q 006229 549 QLIPASTSKVESCHFSPDGKLLA-TGGHDKKAVLWCTE-SFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWD 625 (655)
Q Consensus 549 ~~l~gH~~~V~sl~fSpdG~lLa-Sgs~DgtVrIWDl~-t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS-~DgtVrVWD 625 (655)
..+..+ ..+.+++|+|||++|+ +++.|+.++||+++ .......+..|...|.+++|+|++++|+.++ .|+.++||+
T Consensus 123 ~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~ 201 (297)
T 2ojh_A 123 RLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWR 201 (297)
T ss_dssp EECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEE
T ss_pred EEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEE
Confidence 223333 3488999999999777 78899999999863 2234456778899999999999999888776 599999999
Q ss_pred CC-CCeEEEEEecccceeeeeceeeEEEecC
Q 006229 626 TE-NVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 626 l~-tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
++ .+..+..+..+.. .+.++.|+|+
T Consensus 202 ~~~~~~~~~~~~~~~~-----~~~~~~~s~d 227 (297)
T 2ojh_A 202 VRVDGSSVERITDSAY-----GDWFPHPSPS 227 (297)
T ss_dssp EETTSSCEEECCCCSE-----EEEEEEECTT
T ss_pred ECCCCCCcEEEecCCc-----ccCCeEECCC
Confidence 86 5556666655442 3456777775
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=98.99 E-value=4e-09 Score=120.27 Aligned_cols=154 Identities=10% Similarity=-0.034 Sum_probs=101.4
Q ss_pred ceEEEEecCCCCc--cc--------ccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEee
Q 006229 482 KSLLMFGSDGMGS--LT--------SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI 551 (655)
Q Consensus 482 ~s~l~ws~dg~~~--la--------sss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l 551 (655)
..+.+|+.++... +. +....+.+.++.|+.++. ++|.+|+...+. .....
T Consensus 91 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~-------------------~~~~~ 150 (723)
T 1xfd_A 91 GYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQ-------------------AIRVV 150 (723)
T ss_dssp SEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSC-------------------CEEEE
T ss_pred eeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCc-------------------eEEEe
Confidence 5677787765321 11 222356667777777765 678888554431 11111
Q ss_pred cCCC------------------CCeeEEEEcCCCCEEEEEeCCC----------------------------------cE
Q 006229 552 PAST------------------SKVESCHFSPDGKLLATGGHDK----------------------------------KA 579 (655)
Q Consensus 552 ~gH~------------------~~V~sl~fSpdG~lLaSgs~Dg----------------------------------tV 579 (655)
..+. +.+.+++|||||++|++++.|+ +|
T Consensus 151 ~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l 230 (723)
T 1xfd_A 151 STGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISL 230 (723)
T ss_dssp CCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEE
T ss_pred cCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEE
Confidence 1111 2347899999999999988653 79
Q ss_pred EEEeCCCCeEEEEeccc------CCCEEEEEEcCCCCEEEEEeC----CCcEEEEECCCCeEEEEEecccceeeeeceee
Q 006229 580 VLWCTESFTVKSTLEEH------TQWITDVRFSPSLSRLATSSA----DRTVRVWDTENVRKLTFICCYKCIFVSTAIGS 649 (655)
Q Consensus 580 rIWDl~t~~~l~tl~gH------~~~ItsVafsPdg~~LaSgS~----DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss 649 (655)
++||+.++++...+..| ...|.+++|+|||++|++.+. +..|++||+.++++...+..+...........
T Consensus 231 ~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~ 310 (723)
T 1xfd_A 231 HVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEE 310 (723)
T ss_dssp EEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCC
T ss_pred EEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCC
Confidence 99999998876667654 678999999999999877753 35799999999988776644322111100135
Q ss_pred EEEecC
Q 006229 650 CFFAPT 655 (655)
Q Consensus 650 ~~F~P~ 655 (655)
++|+||
T Consensus 311 ~~~spd 316 (723)
T 1xfd_A 311 PVFSKD 316 (723)
T ss_dssp CEECTT
T ss_pred ceEcCC
Confidence 677775
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=98.99 E-value=5e-09 Score=106.29 Aligned_cols=124 Identities=14% Similarity=0.096 Sum_probs=92.6
Q ss_pred cEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeec-CCCC-CeeEEEEcCCCCEE-EEEeCCCcEEEEe
Q 006229 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-ASTS-KVESCHFSPDGKLL-ATGGHDKKAVLWC 583 (655)
Q Consensus 507 ~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~-gH~~-~V~sl~fSpdG~lL-aSgs~DgtVrIWD 583 (655)
.++++++.|++|.+|+..++ +.+..+. ++.. .+.+++|+|||++| ++++.++.|++||
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~-------------------~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d 62 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKM-------------------AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID 62 (337)
T ss_dssp EEEEEEETTTEEEEEETTTT-------------------EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred cEEEEcCCCCeEEEEECCCC-------------------cEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEE
Confidence 57888999999999965443 2333333 2222 47899999999865 5566689999999
Q ss_pred CCCCeEEEEecc-c----CCCEEEEEEcCCCCEEEEEe------------CCCcEEEEECCCCeEEEEEecccceeeeec
Q 006229 584 TESFTVKSTLEE-H----TQWITDVRFSPSLSRLATSS------------ADRTVRVWDTENVRKLTFICCYKCIFVSTA 646 (655)
Q Consensus 584 l~t~~~l~tl~g-H----~~~ItsVafsPdg~~LaSgS------------~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~ 646 (655)
+.+++.+..+.. + ...+.+++|+|+|++|++++ .|+.|++||+.+++.+..+.....
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~------ 136 (337)
T 1pby_B 63 LVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQ------ 136 (337)
T ss_dssp TTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSS------
T ss_pred CCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCC------
Confidence 999998877752 2 23678999999999999887 679999999999988877764322
Q ss_pred eeeEEEecC
Q 006229 647 IGSCFFAPT 655 (655)
Q Consensus 647 Vss~~F~P~ 655 (655)
+.+++|+|+
T Consensus 137 ~~~~~~s~d 145 (337)
T 1pby_B 137 ITMLAWARD 145 (337)
T ss_dssp CCCEEECTT
T ss_pred cceeEECCC
Confidence 345667764
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=4.1e-09 Score=120.14 Aligned_cols=168 Identities=14% Similarity=0.088 Sum_probs=105.8
Q ss_pred CceEEEEecCCCCcc-------cccCcccCCCCcEEEeccCCCcEEEEecCC-----CCCCCCccccccccCCCceeeeE
Q 006229 481 SKSLLMFGSDGMGSL-------TSAPNQLTDMDRFVDDGSLDDNVESFLSPD-----DADPRDRVGRSAEVGKGFTFTEF 548 (655)
Q Consensus 481 d~s~l~ws~dg~~~l-------asss~~l~~~~~~LasGS~D~tV~vW~s~d-----~~d~~d~~~~l~d~~~~~t~~~v 548 (655)
+..+.+|+..+.... .+....+.+.+++|+.+ .|++|.+|+..+ +... .+...........+
T Consensus 100 ~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~-----~~~~~~~~~~~~g~ 173 (706)
T 2z3z_A 100 QGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAI-----AVTIDGTETLVYGQ 173 (706)
T ss_dssp TTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCE-----ESCSCCBTTEEESS
T ss_pred CCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcE-----EeccCCCCCeEccc
Confidence 477888887653211 12233567777788774 689999997655 3210 00000000000000
Q ss_pred EeecCCCCCeeEEEEcCCCCEEEEEe---------------------------------CCCcEEEEeCCCCeEEEEec-
Q 006229 549 QLIPASTSKVESCHFSPDGKLLATGG---------------------------------HDKKAVLWCTESFTVKSTLE- 594 (655)
Q Consensus 549 ~~l~gH~~~V~sl~fSpdG~lLaSgs---------------------------------~DgtVrIWDl~t~~~l~tl~- 594 (655)
.....+...+.++.|||||++|++++ .+..|++||+.+++......
T Consensus 174 ~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~ 253 (706)
T 2z3z_A 174 AVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTG 253 (706)
T ss_dssp CCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCC
T ss_pred chhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccC
Confidence 01122334578999999999999998 44679999999988765543
Q ss_pred -ccCCCEEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCeEEEEEecccceeeeeceeeEEEec
Q 006229 595 -EHTQWITDVRFSPSLSRLATSSADR-----TVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAP 654 (655)
Q Consensus 595 -gH~~~ItsVafsPdg~~LaSgS~Dg-----tVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P 654 (655)
.|...|.+++|+|||++|++++.|+ +|++||+.+++++..+...........+.++.|+|
T Consensus 254 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp 319 (706)
T 2z3z_A 254 EPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLP 319 (706)
T ss_dssp SCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECT
T ss_pred CCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeec
Confidence 5778899999999999999988876 89999999995444443221111111234567777
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=98.97 E-value=3.6e-09 Score=121.18 Aligned_cols=117 Identities=9% Similarity=0.011 Sum_probs=86.7
Q ss_pred CcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCc
Q 006229 499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKK 578 (655)
Q Consensus 499 s~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~Dgt 578 (655)
...+.+.+++|++++. ++|.+|+...+.. ..+..+..|...|.+++|||||++|++++ ++.
T Consensus 113 ~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~-----------------~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~ 173 (741)
T 2ecf_A 113 DYQWSPDAQRLLFPLG-GELYLYDLKQEGK-----------------AAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRN 173 (741)
T ss_dssp CCEECTTSSEEEEEET-TEEEEEESSSCST-----------------TSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTE
T ss_pred eeEECCCCCEEEEEeC-CcEEEEECCCCCc-----------------ceEEEcccCCcccccccCCCCCCEEEEEe-CCc
Confidence 3455666677777665 7788885543300 01233456677899999999999999988 469
Q ss_pred EEEEeCCCCeEEEEecccCCC----------------EEEEEEcCCCCEEEEEeCCC-----------------------
Q 006229 579 AVLWCTESFTVKSTLEEHTQW----------------ITDVRFSPSLSRLATSSADR----------------------- 619 (655)
Q Consensus 579 VrIWDl~t~~~l~tl~gH~~~----------------ItsVafsPdg~~LaSgS~Dg----------------------- 619 (655)
|++||+.+++.......+... +.+++|+|||++|++++.|+
T Consensus 174 i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~ 253 (741)
T 2ecf_A 174 LWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRY 253 (741)
T ss_dssp EEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEEC
T ss_pred EEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeec
Confidence 999999998887666555443 47899999999999998876
Q ss_pred ----------cEEEEECCC-CeEEEE
Q 006229 620 ----------TVRVWDTEN-VRKLTF 634 (655)
Q Consensus 620 ----------tVrVWDl~t-g~~v~~ 634 (655)
.|++||+.+ +++...
T Consensus 254 ~~~g~~~~~~~l~~~d~~~~~~~~~~ 279 (741)
T 2ecf_A 254 PAAGDANVQVKLGVISPAEQAQTQWI 279 (741)
T ss_dssp CBTTSCCCEEEEEEECSSTTCCCEEE
T ss_pred CCCCCCCCeeEEEEEECCCCCceEEe
Confidence 899999998 775543
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.2e-08 Score=104.18 Aligned_cols=162 Identities=14% Similarity=0.061 Sum_probs=99.7
Q ss_pred eeccCCCCceEEEEecCCCCcccc-------cCcccCCCCcEEE-eccCCCcEEEEecCCCCCCCCccccccccCCCcee
Q 006229 474 LQHNGASSKSLLMFGSDGMGSLTS-------APNQLTDMDRFVD-DGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTF 545 (655)
Q Consensus 474 ~~~s~S~d~s~l~ws~dg~~~las-------ss~~l~~~~~~La-sGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~ 545 (655)
+..+.+.+..+.+|+.+....... ....+.+.+++++ ++..++.|.+|+..++. .
T Consensus 12 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~----------------~- 74 (331)
T 3u4y_A 12 GIVVEQHLRRISFFSTDTLEILNQITLGYDFVDTAITSDCSNVVVTSDFCQTLVQIETQLEP----------------P- 74 (331)
T ss_dssp EEEEEGGGTEEEEEETTTCCEEEEEECCCCEEEEEECSSSCEEEEEESTTCEEEEEECSSSS----------------C-
T ss_pred EEEEecCCCeEEEEeCcccceeeeEEccCCcceEEEcCCCCEEEEEeCCCCeEEEEECCCCc----------------e-
Confidence 345555667778887764211110 1223444555443 44447778777554331 0
Q ss_pred eeEEeecCCCCCeeEEEEcCCCCEEEEEeCCC---cEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEE-EEeCCCc-
Q 006229 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDK---KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRT- 620 (655)
Q Consensus 546 ~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~Dg---tVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~La-SgS~Dgt- 620 (655)
....+..+...+.+++|+|||++|+++..++ .|++||+.+++.+..+..+ ..+.+++|+|+|++|+ ++..++.
T Consensus 75 -~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~ 152 (331)
T 3u4y_A 75 -KVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANT 152 (331)
T ss_dssp -EEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTE
T ss_pred -eEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCce
Confidence 1334445555565699999999999555553 8999999999998887644 4569999999998555 4456688
Q ss_pred EEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 621 VRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 621 VrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
|++|++.....+.... ............++|+|+
T Consensus 153 i~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~spd 186 (331)
T 3u4y_A 153 VRRFKIDADGVLFDTG-QEFISGGTRPFNITFTPD 186 (331)
T ss_dssp EEEEEECTTCCEEEEE-EEEECSSSSEEEEEECTT
T ss_pred EEEEEECCCCcEeecC-CccccCCCCccceEECCC
Confidence 9999998644432221 111111122456777775
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=98.97 E-value=2.2e-08 Score=101.53 Aligned_cols=86 Identities=12% Similarity=-0.082 Sum_probs=74.5
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE
Q 006229 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRK 631 (655)
Q Consensus 552 ~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~ 631 (655)
..+...+.+++|+|||++|+++ |+.|++||+.+++.+..+.. ...+.+++|+|++++|++++.|+.|++||+.+++.
T Consensus 237 ~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~ 313 (337)
T 1pby_B 237 RIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL-PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEK 313 (337)
T ss_dssp EECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCE
T ss_pred CCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC-CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcE
Confidence 3455667889999999999988 79999999999998887763 35688999999999999999999999999999999
Q ss_pred EEEEecccc
Q 006229 632 LTFICCYKC 640 (655)
Q Consensus 632 v~~l~~~~~ 640 (655)
+..+..+..
T Consensus 314 ~~~~~~~~~ 322 (337)
T 1pby_B 314 KGQVDLPGN 322 (337)
T ss_dssp EEEEECGGG
T ss_pred EEEEEcCCC
Confidence 998876644
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=98.96 E-value=1.4e-09 Score=121.65 Aligned_cols=82 Identities=15% Similarity=0.138 Sum_probs=73.0
Q ss_pred EeecCCCCCeeEEEEcCCCCEEEEEeCCC--cEEEEeCCCCeEEEEecccCCCEEEEE--------EcCCCCEEEEEeCC
Q 006229 549 QLIPASTSKVESCHFSPDGKLLATGGHDK--KAVLWCTESFTVKSTLEEHTQWITDVR--------FSPSLSRLATSSAD 618 (655)
Q Consensus 549 ~~l~gH~~~V~sl~fSpdG~lLaSgs~Dg--tVrIWDl~t~~~l~tl~gH~~~ItsVa--------fsPdg~~LaSgS~D 618 (655)
+.+..|...+.+++|||||++|+++..|+ .|++||++++++. .+.+|...|.+++ |+|||.++++++.|
T Consensus 188 ~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~ 266 (582)
T 3o4h_A 188 RVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARRE 266 (582)
T ss_dssp EEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEET
T ss_pred eEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcC
Confidence 35677888899999999999999888888 8999999999888 8888988888888 99999999999999
Q ss_pred CcEEEEECCCCeEEE
Q 006229 619 RTVRVWDTENVRKLT 633 (655)
Q Consensus 619 gtVrVWDl~tg~~v~ 633 (655)
++++||++ ++++.
T Consensus 267 g~~~l~~~--g~~~~ 279 (582)
T 3o4h_A 267 GRSAVFID--GERVE 279 (582)
T ss_dssp TEEEEEET--TEEEC
T ss_pred CcEEEEEE--CCeec
Confidence 99999999 66553
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=9.4e-09 Score=115.65 Aligned_cols=143 Identities=10% Similarity=0.086 Sum_probs=106.8
Q ss_pred ceeccCCCCceEEEEecCCCCcc-------cccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCcee
Q 006229 473 TLQHNGASSKSLLMFGSDGMGSL-------TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTF 545 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~~l-------asss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~ 545 (655)
.+..+.+.+.++.+|+......+ ......+.+.+++|++++.|++|++|+.... +.
T Consensus 150 ~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~-----------------t~ 212 (543)
T 1nir_A 150 LFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAK-----------------EP 212 (543)
T ss_dssp EEEEEEGGGTEEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEETTSEEEEEETTSS-----------------SC
T ss_pred EEEEEEcCCCeEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECCCCeEEEEECcCC-----------------CC
Confidence 45666777888888987653211 1123356777889999999999999965100 12
Q ss_pred eeEEeecCCCCCeeEEEEcC----CCCEEEEEeC-CCcEEEEeCCCCeEEEEecc----------cCC-CEEEEEEcCCC
Q 006229 546 TEFQLIPASTSKVESCHFSP----DGKLLATGGH-DKKAVLWCTESFTVKSTLEE----------HTQ-WITDVRFSPSL 609 (655)
Q Consensus 546 ~~v~~l~gH~~~V~sl~fSp----dG~lLaSgs~-DgtVrIWDl~t~~~l~tl~g----------H~~-~ItsVafsPdg 609 (655)
+++.++.. ...+.+|+|+| ||++|++++. |++|+|||..+++++.++.. |.. .|.+|.|+|++
T Consensus 213 ~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~ 291 (543)
T 1nir_A 213 TKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEH 291 (543)
T ss_dssp EEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSS
T ss_pred cEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCC
Confidence 44555553 45689999999 9999999985 89999999999999988864 333 79999999976
Q ss_pred C-EEEEEeCCCcEEEEECCCCeEEE
Q 006229 610 S-RLATSSADRTVRVWDTENVRKLT 633 (655)
Q Consensus 610 ~-~LaSgS~DgtVrVWDl~tg~~v~ 633 (655)
. ++++...|++|.+||+.+.+++.
T Consensus 292 ~~~~vs~~~~g~i~vvd~~~~~~l~ 316 (543)
T 1nir_A 292 PEFIVNVKETGKVLLVNYKDIDNLT 316 (543)
T ss_dssp SEEEEEETTTTEEEEEECTTSSSCE
T ss_pred CEEEEEECCCCeEEEEEecCCCcce
Confidence 5 56777789999999998876544
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=98.94 E-value=8.5e-09 Score=105.32 Aligned_cols=129 Identities=9% Similarity=0.014 Sum_probs=92.6
Q ss_pred cCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCC-CCeeEEEEcCCCCEE-EEEeCCCcE
Q 006229 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST-SKVESCHFSPDGKLL-ATGGHDKKA 579 (655)
Q Consensus 502 l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~-~~V~sl~fSpdG~lL-aSgs~DgtV 579 (655)
+...+.++++++.|++|.+|+..++ +.+..+..+. ..+.+++|+|||+++ +++..++.|
T Consensus 7 ~~~~~~~~v~~~~~~~v~~~d~~~~-------------------~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i 67 (349)
T 1jmx_B 7 LKAGHEYMIVTNYPNNLHVVDVASD-------------------TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDI 67 (349)
T ss_dssp CCTTCEEEEEEETTTEEEEEETTTT-------------------EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEE
T ss_pred ccCCCEEEEEeCCCCeEEEEECCCC-------------------cEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcE
Confidence 3445578888899999999965544 2333333332 257899999999865 455678999
Q ss_pred EEEeCCCCeEEEEecc-c-----CCCEEEEEEcCCCCEEEEEeCC------------CcEEEEECCCCe---EEEEEecc
Q 006229 580 VLWCTESFTVKSTLEE-H-----TQWITDVRFSPSLSRLATSSAD------------RTVRVWDTENVR---KLTFICCY 638 (655)
Q Consensus 580 rIWDl~t~~~l~tl~g-H-----~~~ItsVafsPdg~~LaSgS~D------------gtVrVWDl~tg~---~v~~l~~~ 638 (655)
++||+.+++.+..+.. + ...+.+++|+|+|++|++++.| +.|.+||+.+++ .+..+...
T Consensus 68 ~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 147 (349)
T 1jmx_B 68 YGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP 147 (349)
T ss_dssp EEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC
T ss_pred EEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC
Confidence 9999999998877763 3 2347899999999999999866 899999998843 33333332
Q ss_pred cceeeeeceeeEEEecC
Q 006229 639 KCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 639 ~~~v~s~~Vss~~F~P~ 655 (655)
. .+.+++|+|+
T Consensus 148 ~------~~~~~~~s~d 158 (349)
T 1jmx_B 148 R------QVYLMRAADD 158 (349)
T ss_dssp S------SCCCEEECTT
T ss_pred C------cccceeECCC
Confidence 2 2456667764
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=98.93 E-value=5.6e-09 Score=116.68 Aligned_cols=79 Identities=13% Similarity=-0.015 Sum_probs=70.0
Q ss_pred eEEEEcCCCCEEEEEeCC----CcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCC--cEEEEECCCCeEE
Q 006229 559 ESCHFSPDGKLLATGGHD----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR--TVRVWDTENVRKL 632 (655)
Q Consensus 559 ~sl~fSpdG~lLaSgs~D----gtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~Dg--tVrVWDl~tg~~v 632 (655)
.+++|||||++|++++.| ..|++||+.+++.. .+.+|...+.+++|+|||++|+++..|+ .|++||+.++++.
T Consensus 153 ~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 153 FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE 231 (582)
T ss_dssp CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE
T ss_pred ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE
Confidence 789999999999988887 78999999988765 7788999999999999999999888999 8999999998877
Q ss_pred EEEeccc
Q 006229 633 TFICCYK 639 (655)
Q Consensus 633 ~~l~~~~ 639 (655)
.+..+.
T Consensus 232 -~~~~~~ 237 (582)
T 3o4h_A 232 -DLELPS 237 (582)
T ss_dssp -ECCCSC
T ss_pred -EccCCC
Confidence 555544
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=98.93 E-value=7.2e-09 Score=105.37 Aligned_cols=124 Identities=13% Similarity=0.080 Sum_probs=85.8
Q ss_pred EEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCC-CcEEEEeCC-
Q 006229 508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD-KKAVLWCTE- 585 (655)
Q Consensus 508 ~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~D-gtVrIWDl~- 585 (655)
++++++.|+.|++|+..... ....+..+ .|...+.+++|+|+|++|++++.+ +.|++|+++
T Consensus 7 l~~~~~~~~~v~~~~~~~~~----------------~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~ 69 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEG----------------ALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP 69 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTS----------------CEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred EEEeCCCCCeEEEEEECCCC----------------cEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecC
Confidence 34555789999999653210 11222222 466779999999999999988887 999999997
Q ss_pred -CCe--EEEEecccCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECC---CCeEEEEEecccceeeeeceeeEEEecC
Q 006229 586 -SFT--VKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTE---NVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 586 -t~~--~l~tl~gH~~~ItsVafsPdg~~LaSgS~-DgtVrVWDl~---tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
+++ .+..+..+. .+.+++|+|++++|++++. |+.|++||+. ..+.+..+..+. .+.+++|+|+
T Consensus 70 ~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~------~~~~~~~s~d 139 (343)
T 1ri6_A 70 DDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLD------GCHSANISPD 139 (343)
T ss_dssp TTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCT------TBCCCEECTT
T ss_pred CCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCC------CceEEEECCC
Confidence 554 445555444 8899999999998877765 8899999994 334444443322 2445666664
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=1.1e-08 Score=116.47 Aligned_cols=118 Identities=14% Similarity=0.081 Sum_probs=85.8
Q ss_pred CCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC-----Ce
Q 006229 514 LDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-----FT 588 (655)
Q Consensus 514 ~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t-----~~ 588 (655)
.|++|.+|+..++ ....+..+...|.+++|||||++|+++ .|+.|++||+.+ ++
T Consensus 99 ~~~~i~~~d~~~~--------------------~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~ 157 (706)
T 2z3z_A 99 TQGGLVGFDMLAR--------------------KVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSR 157 (706)
T ss_dssp ETTEEEEEETTTT--------------------EEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCC
T ss_pred ECCEEEEEECCCC--------------------ceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCC
Confidence 3588888865433 123344566779999999999999985 689999999998 87
Q ss_pred EEEEecccCCC--------------EEEEEEcCCCCEEEEEe---------------------------------CCCcE
Q 006229 589 VKSTLEEHTQW--------------ITDVRFSPSLSRLATSS---------------------------------ADRTV 621 (655)
Q Consensus 589 ~l~tl~gH~~~--------------ItsVafsPdg~~LaSgS---------------------------------~DgtV 621 (655)
.......+... +.+++|+|||++|++++ .+..|
T Consensus 158 ~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l 237 (706)
T 2z3z_A 158 AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTV 237 (706)
T ss_dssp CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEE
T ss_pred cEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEE
Confidence 77655545443 48999999999999998 45679
Q ss_pred EEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 622 RVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 622 rVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
++||+.+++......... ....+.+++|+||
T Consensus 238 ~~~d~~~~~~~~~~~~~~---~~~~~~~~~~spd 268 (706)
T 2z3z_A 238 GIYHLATGKTVYLQTGEP---KEKFLTNLSWSPD 268 (706)
T ss_dssp EEEETTTTEEEECCCCSC---TTCEEEEEEECTT
T ss_pred EEEECCCCceEeeccCCC---CceeEeeEEEECC
Confidence 999999987654332211 1123567888875
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.86 E-value=3.6e-09 Score=121.04 Aligned_cols=105 Identities=12% Similarity=0.158 Sum_probs=78.3
Q ss_pred EEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCC---CeeEEEEcCCCCEEEEEeC---------
Q 006229 508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS---KVESCHFSPDGKLLATGGH--------- 575 (655)
Q Consensus 508 ~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~---~V~sl~fSpdG~lLaSgs~--------- 575 (655)
+++++ .|++|++|+...+ .+...+..|.. .|.+++|||||++|++++.
T Consensus 29 ~~~~~-~d~~i~~~~~~~g-------------------~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~ 88 (719)
T 1z68_A 29 YLHQS-ADNNIVLYNIETG-------------------QSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSY 88 (719)
T ss_dssp EEEEC-TTSCEEEEESSSC-------------------CEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCE
T ss_pred EEEEc-CCCCEEEEEcCCC-------------------cEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeec
Confidence 55554 4889999976554 12222233322 4889999999999999876
Q ss_pred CCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 006229 576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTF 634 (655)
Q Consensus 576 DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~ 634 (655)
|++|++||+.+++++... .....|.+++|+|||++||+++ |+.|++||+.++++...
T Consensus 89 ~~~i~~~d~~~g~~~~~~-~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l 145 (719)
T 1z68_A 89 TATYYIYDLSNGEFVRGN-ELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQI 145 (719)
T ss_dssp EEEEEEEETTTTEECCSS-CCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEEC
T ss_pred ceEEEEEECCCCccccce-ecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEE
Confidence 789999999999873111 1235689999999999999986 78999999998877543
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=98.85 E-value=1.1e-07 Score=99.03 Aligned_cols=96 Identities=17% Similarity=0.149 Sum_probs=68.8
Q ss_pred CCCCeeEEEEcCCCCEEEEEe-CCCcEEEEeCCCCeE--EEEe---cccCCCEEEEEEcCCCCEEEEEeCC--CcEEEEE
Q 006229 554 STSKVESCHFSPDGKLLATGG-HDKKAVLWCTESFTV--KSTL---EEHTQWITDVRFSPSLSRLATSSAD--RTVRVWD 625 (655)
Q Consensus 554 H~~~V~sl~fSpdG~lLaSgs-~DgtVrIWDl~t~~~--l~tl---~gH~~~ItsVafsPdg~~LaSgS~D--gtVrVWD 625 (655)
+...+.+++|+|||++|++++ .+++|++||+.+++. +..+ ..+...+.+++|+|||++|+++..+ ++|+||+
T Consensus 209 ~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~ 288 (361)
T 3scy_A 209 PGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFK 288 (361)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEE
T ss_pred CCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEE
Confidence 345678999999999887777 689999999987754 2223 3445567899999999998776654 8999999
Q ss_pred CC--CCe--EEEEEecccceeeeeceeeEEEecC
Q 006229 626 TE--NVR--KLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 626 l~--tg~--~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
+. +++ .+..+.. ...+.+++|+|+
T Consensus 289 ~~~~~g~~~~~~~~~~------g~~~~~~~~spd 316 (361)
T 3scy_A 289 VDETNGTLTKVGYQLT------GIHPRNFIITPN 316 (361)
T ss_dssp ECTTTCCEEEEEEEEC------SSCCCEEEECTT
T ss_pred EcCCCCcEEEeeEecC------CCCCceEEECCC
Confidence 96 444 3333332 122446777775
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.83 E-value=9.2e-09 Score=117.65 Aligned_cols=118 Identities=14% Similarity=0.058 Sum_probs=79.8
Q ss_pred CCceEEEEecCCCCccc-----------ccCcccCCCCcEEEeccC---------CCcEEEEecCCCCCCCCcccccccc
Q 006229 480 SSKSLLMFGSDGMGSLT-----------SAPNQLTDMDRFVDDGSL---------DDNVESFLSPDDADPRDRVGRSAEV 539 (655)
Q Consensus 480 ~d~s~l~ws~dg~~~la-----------sss~~l~~~~~~LasGS~---------D~tV~vW~s~d~~d~~d~~~~l~d~ 539 (655)
.++.+.+|+.++..... +....+.+.+++|+.++. |++|++|+..++.
T Consensus 34 ~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~------------ 101 (719)
T 1z68_A 34 ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGE------------ 101 (719)
T ss_dssp TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE------------
T ss_pred CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCc------------
Confidence 36678888876632111 223345666777777665 6788888654441
Q ss_pred CCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe-cccCCCE-----------------E
Q 006229 540 GKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWI-----------------T 601 (655)
Q Consensus 540 ~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl-~gH~~~I-----------------t 601 (655)
... ...+ ...|.+++|||||++|+++. |+.|++||+.++++.... .+|...| .
T Consensus 102 ----~~~-~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~ 172 (719)
T 1z68_A 102 ----FVR-GNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKY 172 (719)
T ss_dssp ----ECC-SSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSC
T ss_pred ----ccc-ceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcc
Confidence 000 0111 24588999999999999986 789999999988776433 3444433 4
Q ss_pred EEEEcCCCCEEEEEeCC
Q 006229 602 DVRFSPSLSRLATSSAD 618 (655)
Q Consensus 602 sVafsPdg~~LaSgS~D 618 (655)
+++|+|||++|++++.|
T Consensus 173 ~~~wSPDG~~la~~~~d 189 (719)
T 1z68_A 173 ALWWSPNGKFLAYAEFN 189 (719)
T ss_dssp CEEECTTSSEEEEEEEE
T ss_pred cEEECCCCCEEEEEEEC
Confidence 89999999999999876
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=98.81 E-value=1.4e-07 Score=98.23 Aligned_cols=134 Identities=11% Similarity=0.045 Sum_probs=85.2
Q ss_pred ccCCCCcEEEecc-CCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCC--C
Q 006229 501 QLTDMDRFVDDGS-LDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD--K 577 (655)
Q Consensus 501 ~l~~~~~~LasGS-~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~D--g 577 (655)
.+.+.+++++.++ .++.|.+|+..++. ......+.....+...+.+++|+|||++|++++.+ +
T Consensus 217 ~~spdg~~l~v~~~~~~~v~v~~~~~g~--------------~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~ 282 (361)
T 3scy_A 217 IFNSDGKFAYLINEIGGTVIAFRYADGM--------------LDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKAD 282 (361)
T ss_dssp EECTTSSEEEEEETTTCEEEEEEEETTE--------------EEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSC
T ss_pred EEcCCCCEEEEEcCCCCeEEEEEecCCc--------------eEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCC
Confidence 3455555554444 67888888554220 00111223333445567899999999988776654 8
Q ss_pred cEEEEeCC--CCe--EEEEecccCCCEEEEEEcCCCCEEEEEe-CCCcEEEEEC--CCCeEEEEEecccceeeeeceeeE
Q 006229 578 KAVLWCTE--SFT--VKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDT--ENVRKLTFICCYKCIFVSTAIGSC 650 (655)
Q Consensus 578 tVrIWDl~--t~~--~l~tl~gH~~~ItsVafsPdg~~LaSgS-~DgtVrVWDl--~tg~~v~~l~~~~~~v~s~~Vss~ 650 (655)
+|+||+++ +++ .+..+.. ...+.+++|+|+|++|++++ .++.|.||++ .+++..... + ......+.++
T Consensus 283 ~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~--~--~~~~~~p~~v 357 (361)
T 3scy_A 283 GVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIK--K--DIKVDKPVCL 357 (361)
T ss_dssp EEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECS--C--CEECSSEEEE
T ss_pred EEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecc--e--eeeCCCCeEE
Confidence 99999996 444 4445544 56788999999999988888 6789999654 566644321 1 1122345567
Q ss_pred EEe
Q 006229 651 FFA 653 (655)
Q Consensus 651 ~F~ 653 (655)
.|.
T Consensus 358 ~~~ 360 (361)
T 3scy_A 358 KFV 360 (361)
T ss_dssp EEE
T ss_pred EEc
Confidence 775
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=2.7e-08 Score=119.71 Aligned_cols=124 Identities=6% Similarity=-0.053 Sum_probs=95.1
Q ss_pred CCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCC-CeeEEEEcCCCCEEEEEeCCCcEE-E
Q 006229 504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS-KVESCHFSPDGKLLATGGHDKKAV-L 581 (655)
Q Consensus 504 ~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~-~V~sl~fSpdG~lLaSgs~DgtVr-I 581 (655)
+.+++|+.++ ++.|.+|....+ ....+..|.. .|.+++|+ ||+.|++++.+..|. +
T Consensus 306 pdG~~la~~~-~~~i~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~ 363 (1045)
T 1k32_A 306 LDGDLIAFVS-RGQAFIQDVSGT--------------------YVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGI 363 (1045)
T ss_dssp CGGGCEEEEE-TTEEEEECTTSS--------------------BEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEE
T ss_pred CCCCEEEEEE-cCEEEEEcCCCC--------------------ceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEE
Confidence 4444555555 667777743322 1233556767 89999999 999999999988898 9
Q ss_pred EeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 582 WDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
||+.+++... +.+|...|.+++|+|||++|++++.|+.|++||+.++++...+..+... +.+++|+||
T Consensus 364 ~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~-----v~~~~~SpD 431 (1045)
T 1k32_A 364 YDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAM-----ITDFTISDN 431 (1045)
T ss_dssp EETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSC-----CCCEEECTT
T ss_pred EECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCC-----ccceEECCC
Confidence 9998877654 4489899999999999999999999999999999999887776555432 446777775
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=98.79 E-value=2.2e-07 Score=96.02 Aligned_cols=133 Identities=17% Similarity=0.122 Sum_probs=82.4
Q ss_pred cCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCC-CCCeeEEEEcCCCCEEEE-EeCCCcE
Q 006229 502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS-TSKVESCHFSPDGKLLAT-GGHDKKA 579 (655)
Q Consensus 502 l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH-~~~V~sl~fSpdG~lLaS-gs~DgtV 579 (655)
+.+.+++++++..++.|.+|+.... + ....+..+..+ ...+..++|+|||++|++ +..++.|
T Consensus 148 ~spdg~l~v~~~~~~~v~~~~~~~~---------------g-~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v 211 (347)
T 3hfq_A 148 LTPDNRLAVIDLGSDKVYVYNVSDA---------------G-QLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQI 211 (347)
T ss_dssp ECTTSCEEEEETTTTEEEEEEECTT---------------S-CEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred ECCCCcEEEEeCCCCEEEEEEECCC---------------C-cEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEE
Confidence 3444455556656677777754411 1 11222222222 235788999999996555 5678999
Q ss_pred EEEeCCC--CeE--EEEecccC------CCEEEEEEcCCCCEE-EEEeCCCcEEEEECCC---CeEEEEEecccceeeee
Q 006229 580 VLWCTES--FTV--KSTLEEHT------QWITDVRFSPSLSRL-ATSSADRTVRVWDTEN---VRKLTFICCYKCIFVST 645 (655)
Q Consensus 580 rIWDl~t--~~~--l~tl~gH~------~~ItsVafsPdg~~L-aSgS~DgtVrVWDl~t---g~~v~~l~~~~~~v~s~ 645 (655)
++||++. ++. +..+..+. ..+.+++|+|+|++| +++..+++|+|||+.. .+.+..+..+..
T Consensus 212 ~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~----- 286 (347)
T 3hfq_A 212 ASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGD----- 286 (347)
T ss_dssp EEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSS-----
T ss_pred EEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCC-----
Confidence 9999874 543 33333332 458999999999987 5666799999999972 244444444322
Q ss_pred ceeeEEEecC
Q 006229 646 AIGSCFFAPT 655 (655)
Q Consensus 646 ~Vss~~F~P~ 655 (655)
.+..++|+|+
T Consensus 287 ~~~~~~~spd 296 (347)
T 3hfq_A 287 FPRDFDLDPT 296 (347)
T ss_dssp CCCEEEECTT
T ss_pred CcCeEEECCC
Confidence 2346777775
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.2e-07 Score=97.81 Aligned_cols=145 Identities=12% Similarity=0.251 Sum_probs=93.2
Q ss_pred ceeccCCCCceEEEEecCCCCccc------c------cCcccCCCCcE-EEeccCCCcEEEEecCCCCCCCCcccccccc
Q 006229 473 TLQHNGASSKSLLMFGSDGMGSLT------S------APNQLTDMDRF-VDDGSLDDNVESFLSPDDADPRDRVGRSAEV 539 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~~la------s------ss~~l~~~~~~-LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~ 539 (655)
.+..+...+..+.+|+.+..+.+. . ....+.+.+++ ++++..++.|.+|......
T Consensus 153 ~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~------------ 220 (347)
T 3hfq_A 153 RLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQT------------ 220 (347)
T ss_dssp CEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTT------------
T ss_pred cEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCC------------
Confidence 344455556677778776322211 0 01144555554 4445667888888543210
Q ss_pred CCCceeeeEEeecCCC------CCeeEEEEcCCCCEE-EEEeCCCcEEEEeCC---CCeEEEEecccCCCEEEEEEcCCC
Q 006229 540 GKGFTFTEFQLIPAST------SKVESCHFSPDGKLL-ATGGHDKKAVLWCTE---SFTVKSTLEEHTQWITDVRFSPSL 609 (655)
Q Consensus 540 ~~~~t~~~v~~l~gH~------~~V~sl~fSpdG~lL-aSgs~DgtVrIWDl~---t~~~l~tl~gH~~~ItsVafsPdg 609 (655)
+ .+..+..+.... ..+.+++|+|||++| +++..++.|++||+. +.+.+..+..|...+.+++|+|+|
T Consensus 221 --g-~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg 297 (347)
T 3hfq_A 221 --G-AFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTE 297 (347)
T ss_dssp --T-EEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTS
T ss_pred --C-ceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCC
Confidence 0 112222222222 358899999999977 556678999999997 336666777777789999999999
Q ss_pred CEEEEEeCC-CcEEEE--ECCCCeEE
Q 006229 610 SRLATSSAD-RTVRVW--DTENVRKL 632 (655)
Q Consensus 610 ~~LaSgS~D-gtVrVW--Dl~tg~~v 632 (655)
++|++++.+ +.|.|| |..+++..
T Consensus 298 ~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 298 AFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp SEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred CEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 998888864 899999 55566654
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=98.78 E-value=1.6e-07 Score=95.83 Aligned_cols=143 Identities=10% Similarity=-0.030 Sum_probs=94.2
Q ss_pred ceeccCCCCceEEEEecCCCCcc---c------ccCcccCCCCcE-EEeccCCCcEEEEecCCCCCCCCccccccccCCC
Q 006229 473 TLQHNGASSKSLLMFGSDGMGSL---T------SAPNQLTDMDRF-VDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKG 542 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~~l---a------sss~~l~~~~~~-LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~ 542 (655)
.+..+.+.+..+.+|+....... . .....+.+.+++ ++++..++.|.+|+..++
T Consensus 12 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~---------------- 75 (349)
T 1jmx_B 12 EYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC---------------- 75 (349)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTT----------------
T ss_pred EEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCC----------------
Confidence 45666667888888887653211 1 111133444443 445556777888855433
Q ss_pred ceeeeEEeecCC------CCCeeEEEEcCCCCEEEEEeCC------------CcEEEEeCCCCe---EEEEecccCCCEE
Q 006229 543 FTFTEFQLIPAS------TSKVESCHFSPDGKLLATGGHD------------KKAVLWCTESFT---VKSTLEEHTQWIT 601 (655)
Q Consensus 543 ~t~~~v~~l~gH------~~~V~sl~fSpdG~lLaSgs~D------------gtVrIWDl~t~~---~l~tl~gH~~~It 601 (655)
+.+..+..+ ...+.+++|+|||++|++++.+ +.|.+||+.+++ .+..+. +...|.
T Consensus 76 ---~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~ 151 (349)
T 1jmx_B 76 ---KNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVY 151 (349)
T ss_dssp ---EEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCC
T ss_pred ---cEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCccc
Confidence 222222221 2237899999999999998866 899999998843 344444 344689
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecc
Q 006229 602 DVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCY 638 (655)
Q Consensus 602 sVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~ 638 (655)
+++|+|+|+ |+.++. .|++||+.+++.+..+..+
T Consensus 152 ~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~ 185 (349)
T 1jmx_B 152 LMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLR 185 (349)
T ss_dssp CEEECTTSC-EEEESS--SEEEECTTTCCEEEEECST
T ss_pred ceeECCCCc-EEEccC--cEEEEeCCCCceecccccc
Confidence 999999999 666544 4999999999988777544
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=98.71 E-value=2.9e-08 Score=114.90 Aligned_cols=103 Identities=17% Similarity=0.147 Sum_probs=80.1
Q ss_pred EEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCC-----eeEEEEcCCCCEEEEEeCC------
Q 006229 508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK-----VESCHFSPDGKLLATGGHD------ 576 (655)
Q Consensus 508 ~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~-----V~sl~fSpdG~lLaSgs~D------ 576 (655)
+++++ |++|++|+..++ .+...+.+|... ...+.|||||++|+.++.+
T Consensus 30 ~~~~~--~~~i~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~ 88 (740)
T 4a5s_A 30 YLYKQ--ENNILVFNAEYG-------------------NSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRH 88 (740)
T ss_dssp EEEEE--TTEEEEEETTTC-------------------CEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSS
T ss_pred EEEEc--CCcEEEEECCCC-------------------ceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEE
Confidence 66665 899999976555 223334444432 3458899999999999887
Q ss_pred ---CcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE
Q 006229 577 ---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLT 633 (655)
Q Consensus 577 ---gtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~ 633 (655)
+.+.|||+.++++. .+..|...+..++|||||+.||.++ |+.|++||+.++.+..
T Consensus 89 ~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~ 146 (740)
T 4a5s_A 89 SYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYR 146 (740)
T ss_dssp CEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEE
T ss_pred ccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEE
Confidence 44569999999866 5778888999999999999999985 6899999999887554
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=98.70 E-value=9.8e-07 Score=92.75 Aligned_cols=78 Identities=12% Similarity=0.077 Sum_probs=61.9
Q ss_pred CCCCeeEEEEcCCCCEEEEEeC-CCcEEEEeCC-CCeEE--EEec--ccCCCEEEEEEcCCCCEEEEEeC-CCcEEEEEC
Q 006229 554 STSKVESCHFSPDGKLLATGGH-DKKAVLWCTE-SFTVK--STLE--EHTQWITDVRFSPSLSRLATSSA-DRTVRVWDT 626 (655)
Q Consensus 554 H~~~V~sl~fSpdG~lLaSgs~-DgtVrIWDl~-t~~~l--~tl~--gH~~~ItsVafsPdg~~LaSgS~-DgtVrVWDl 626 (655)
+...+.+++|+|||++|++++. +..|++||++ +++.. ..+. .|...+..++|+|+|++|++++. +++|.+|++
T Consensus 143 ~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~ 222 (365)
T 1jof_A 143 ENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVI 222 (365)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEE
Confidence 4567999999999998887764 6899999998 77653 3343 34677999999999999988875 789999987
Q ss_pred C--CCeE
Q 006229 627 E--NVRK 631 (655)
Q Consensus 627 ~--tg~~ 631 (655)
+ +++.
T Consensus 223 ~~~~g~~ 229 (365)
T 1jof_A 223 DPATHMP 229 (365)
T ss_dssp CTTTCCE
T ss_pred eCCCCcE
Confidence 5 5654
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=98.66 E-value=9.9e-08 Score=107.84 Aligned_cols=81 Identities=14% Similarity=0.098 Sum_probs=64.4
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCCC--------cEEEEeCC-CC---eEEEEecccCCCEEEEEEcCCCCEEEEEeCCC-
Q 006229 553 ASTSKVESCHFSPDGKLLATGGHDK--------KAVLWCTE-SF---TVKSTLEEHTQWITDVRFSPSLSRLATSSADR- 619 (655)
Q Consensus 553 gH~~~V~sl~fSpdG~lLaSgs~Dg--------tVrIWDl~-t~---~~l~tl~gH~~~ItsVafsPdg~~LaSgS~Dg- 619 (655)
.+...+.+++|||||++|+.++.|+ .|++||+. ++ +......+|...+.+++|+|||+++++++.|+
T Consensus 185 ~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~ 264 (662)
T 3azo_A 185 DAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGW 264 (662)
T ss_dssp SCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSS
T ss_pred cCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCC
Confidence 4456788899999999999888653 79999999 57 55555566788999999999999888888888
Q ss_pred -cEEEEECCCCeEEE
Q 006229 620 -TVRVWDTENVRKLT 633 (655)
Q Consensus 620 -tVrVWDl~tg~~v~ 633 (655)
.|.+||+.+++...
T Consensus 265 ~~l~~~~~~~~~~~~ 279 (662)
T 3azo_A 265 WNLHRVDPATGAATQ 279 (662)
T ss_dssp CEEEEECTTTCCEEE
T ss_pred eEEEEEECCCCceee
Confidence 56666766666543
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=98.64 E-value=1.8e-07 Score=108.37 Aligned_cols=68 Identities=16% Similarity=0.117 Sum_probs=53.2
Q ss_pred eecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE-EecccCCCE-----------------EEEEEcCCCCE
Q 006229 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWI-----------------TDVRFSPSLSR 611 (655)
Q Consensus 550 ~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~-tl~gH~~~I-----------------tsVafsPdg~~ 611 (655)
.+..|...+..++|||||+.||.+. |+.|++||+.++.+.. +..++...| ..+.|||||++
T Consensus 106 ~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~ 184 (740)
T 4a5s_A 106 TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTF 184 (740)
T ss_dssp CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSE
T ss_pred EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCE
Confidence 4566778899999999999998884 7899999999887654 233444433 35899999999
Q ss_pred EEEEeCC
Q 006229 612 LATSSAD 618 (655)
Q Consensus 612 LaSgS~D 618 (655)
||.++.|
T Consensus 185 la~~~~d 191 (740)
T 4a5s_A 185 LAYAQFN 191 (740)
T ss_dssp EEEEEEE
T ss_pred EEEEEEc
Confidence 9998754
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=98.57 E-value=1e-06 Score=92.68 Aligned_cols=79 Identities=10% Similarity=0.059 Sum_probs=58.7
Q ss_pred CCCCeeEEEEcCCCCEEEEEeC-CCcEEEEeCC--CCeEE------EEec----ccCC------CEEEEE-EcCCCCEEE
Q 006229 554 STSKVESCHFSPDGKLLATGGH-DKKAVLWCTE--SFTVK------STLE----EHTQ------WITDVR-FSPSLSRLA 613 (655)
Q Consensus 554 H~~~V~sl~fSpdG~lLaSgs~-DgtVrIWDl~--t~~~l------~tl~----gH~~------~ItsVa-fsPdg~~La 613 (655)
|...+..++|+|||++|++++. +++|.+|+++ +++.. ..+. +|.. .+.+++ |+|||++|+
T Consensus 191 ~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~ 270 (365)
T 1jof_A 191 PGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMF 270 (365)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEE
T ss_pred CCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEE
Confidence 4567899999999999888775 6899999875 56542 1222 2333 589999 999999988
Q ss_pred EEeCCC------cEEEEECC-CCeEE
Q 006229 614 TSSADR------TVRVWDTE-NVRKL 632 (655)
Q Consensus 614 SgS~Dg------tVrVWDl~-tg~~v 632 (655)
+++.+. +|+|||+. +++..
T Consensus 271 v~~~~~~~~~~~~i~v~~~~~~g~~~ 296 (365)
T 1jof_A 271 ASSRANKFELQGYIAGFKLRDCGSIE 296 (365)
T ss_dssp EEEEESSTTSCCEEEEEEECTTSCEE
T ss_pred EECCCCCCCCCCeEEEEEECCCCCEE
Confidence 776532 89999996 56544
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=98.54 E-value=4e-07 Score=98.61 Aligned_cols=121 Identities=13% Similarity=-0.054 Sum_probs=85.5
Q ss_pred cEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 006229 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (655)
Q Consensus 507 ~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t 586 (655)
.+|+++ .++.|++|+...- . .......|...|.+|.+.+. .++++..||+|.+||+.+
T Consensus 98 ~~L~v~-~~~~l~v~dv~sl----------------~---~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~ 155 (388)
T 1xip_A 98 DQVLVS-TRNALYSLDLEEL----------------S---EFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRT 155 (388)
T ss_dssp TEEEEE-ESSEEEEEESSST----------------T---CEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTT
T ss_pred CEEEEE-cCCcEEEEEchhh----------------h---ccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccC
Confidence 555665 6677777754332 1 12233455667888887754 388899999999999998
Q ss_pred CeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE--EEEEeccccee----eeeceeeEEEecC
Q 006229 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRK--LTFICCYKCIF----VSTAIGSCFFAPT 655 (655)
Q Consensus 587 ~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~--v~~l~~~~~~v----~s~~Vss~~F~P~ 655 (655)
+.... +...|+|++|+|+| ++.|..||+|++|+...+.+ ..++.+....- ....|.++.|.++
T Consensus 156 ~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~ 224 (388)
T 1xip_A 156 KSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSP 224 (388)
T ss_dssp CCEEE----EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSS
T ss_pred Ccccc----ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecC
Confidence 77653 55689999999999 78899999999999998886 66774322111 1344667777653
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=98.53 E-value=3.5e-06 Score=89.27 Aligned_cols=88 Identities=11% Similarity=0.013 Sum_probs=71.8
Q ss_pred EEEEcCCCCEEEEEeC-----------CCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 006229 560 SCHFSPDGKLLATGGH-----------DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (655)
Q Consensus 560 sl~fSpdG~lLaSgs~-----------DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~t 628 (655)
-++|++|++.++++.. +.+|.+||+.+++.+.++..|. +.+|+|+|+|++|++++. ++|.|||+.+
T Consensus 258 ~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t 334 (361)
T 2oiz_A 258 LVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQ 334 (361)
T ss_dssp CEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSS
T ss_pred EEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCC
Confidence 3789999887777643 3589999999999999998877 999999999999999887 9999999999
Q ss_pred C--eEEEEEecccceeeeeceeeEEEecC
Q 006229 629 V--RKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 629 g--~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
+ +.+..+...... ...++|+|+
T Consensus 335 ~~l~~~~~i~~~G~~-----P~~~~~~p~ 358 (361)
T 2oiz_A 335 PEPKLLRTIEGAAEA-----SLQVQFHPV 358 (361)
T ss_dssp SSCEEEEEETTSCSS-----EEEEEECCC
T ss_pred CcceeeEEeccCCCC-----cEEEEecCC
Confidence 9 999887433222 225677775
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=98.51 E-value=5.8e-07 Score=93.76 Aligned_cols=95 Identities=15% Similarity=0.065 Sum_probs=77.0
Q ss_pred eeEEeecCCCCCeeE-----EEEcCCCCEEEEEeC-CCc--EEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeC
Q 006229 546 TEFQLIPASTSKVES-----CHFSPDGKLLATGGH-DKK--AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617 (655)
Q Consensus 546 ~~v~~l~gH~~~V~s-----l~fSpdG~lLaSgs~-Dgt--VrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~ 617 (655)
.++..+..|...+.. ++|||||++|+.++. |+. |.+||+.+++......+|...+.+++|+|||++|+.++.
T Consensus 21 ~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~ 100 (388)
T 3pe7_A 21 AQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKD 100 (388)
T ss_dssp CEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEET
T ss_pred cceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeC
Confidence 345566666655555 889999999999887 664 888899999988877788777778899999999999999
Q ss_pred CCcEEEEECCCCeEEEEEecccc
Q 006229 618 DRTVRVWDTENVRKLTFICCYKC 640 (655)
Q Consensus 618 DgtVrVWDl~tg~~v~~l~~~~~ 640 (655)
|+.|++||+.+++....+..+..
T Consensus 101 ~~~l~~~d~~~g~~~~~~~~~~~ 123 (388)
T 3pe7_A 101 GRNLMRVDLATLEENVVYQVPAE 123 (388)
T ss_dssp TTEEEEEETTTCCEEEEEECCTT
T ss_pred CCeEEEEECCCCcceeeeechhh
Confidence 99999999999987766554443
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=98.50 E-value=7e-07 Score=100.84 Aligned_cols=96 Identities=14% Similarity=0.107 Sum_probs=72.8
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCC----------CcEEEEeCCC------CeEEEEec-ccCCCEEEEEEcCCCCEEEEEe
Q 006229 554 STSKVESCHFSPDGKLLATGGHD----------KKAVLWCTES------FTVKSTLE-EHTQWITDVRFSPSLSRLATSS 616 (655)
Q Consensus 554 H~~~V~sl~fSpdG~lLaSgs~D----------gtVrIWDl~t------~~~l~tl~-gH~~~ItsVafsPdg~~LaSgS 616 (655)
|...+.+++|||||++|++++.| ..|++||+.+ ++.. .+. .+...+.+++|+|||++|+.++
T Consensus 128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG~~la~~~ 206 (662)
T 3azo_A 128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDAHRFVTGPRLSPDGRQAVWLA 206 (662)
T ss_dssp TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESSCSCSSEECCCEECTTSSEEEEEE
T ss_pred CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee-EEEecCCCcccCceECCCCCEEEEEE
Confidence 56678899999999999999887 5899999988 5544 555 6677899999999999999888
Q ss_pred CCC--------cEEEEECC-CC---eEEEEEecccceeeeeceeeEEEecC
Q 006229 617 ADR--------TVRVWDTE-NV---RKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 617 ~Dg--------tVrVWDl~-tg---~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
.|+ .|++||+. ++ ........+.. .+..++|+||
T Consensus 207 ~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~-----~~~~~~~spd 252 (662)
T 3azo_A 207 WDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEE-----AIAQAEWAPD 252 (662)
T ss_dssp ECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTB-----CEEEEEECTT
T ss_pred CCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCc-----eEcceEECCC
Confidence 653 79999999 57 33333322222 3456777775
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=5e-06 Score=83.39 Aligned_cols=98 Identities=4% Similarity=-0.015 Sum_probs=73.4
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecc--cCCCEEEEEEcCCCCEEEEEeCCC-cEEEEECCCC
Q 006229 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE--HTQWITDVRFSPSLSRLATSSADR-TVRVWDTENV 629 (655)
Q Consensus 553 gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~g--H~~~ItsVafsPdg~~LaSgS~Dg-tVrVWDl~tg 629 (655)
.+...+.+|+|+++|+++++...++.|++||.. ++.+.++.. +...+..|+++++|+++++...++ .|++||. ++
T Consensus 161 ~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g 238 (286)
T 1q7f_A 161 KHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DG 238 (286)
T ss_dssp TTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TS
T ss_pred CccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CC
Confidence 345568999999999988888889999999974 566666653 346899999999999999988886 9999996 46
Q ss_pred eEEEEEecccceeeeeceeeEEEecC
Q 006229 630 RKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 630 ~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
+.+..+..+... ..+.+++|+|+
T Consensus 239 ~~~~~~~~~~~~---~~~~~i~~~~~ 261 (286)
T 1q7f_A 239 QLISALESKVKH---AQCFDVALMDD 261 (286)
T ss_dssp CEEEEEEESSCC---SCEEEEEEETT
T ss_pred CEEEEEcccCCC---CcceeEEECCC
Confidence 677666554321 11335566553
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=2.2e-06 Score=88.98 Aligned_cols=164 Identities=8% Similarity=0.031 Sum_probs=103.2
Q ss_pred CceeccCCCCceEEEEecCCCC--cccc----------------cCcccCC-CCcEEEecc-CCCcEEEEecCCCCCCCC
Q 006229 472 PTLQHNGASSKSLLMFGSDGMG--SLTS----------------APNQLTD-MDRFVDDGS-LDDNVESFLSPDDADPRD 531 (655)
Q Consensus 472 ~~~~~s~S~d~s~l~ws~dg~~--~las----------------ss~~l~~-~~~~LasGS-~D~tV~vW~s~d~~d~~d 531 (655)
..+..+...+..+..|++++.. .... ....+++ .+.++++.+ .++.|++|+ .++.
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~---- 176 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGK---- 176 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSC----
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCC----
Confidence 3455666667888899888752 1111 0113344 445555554 467777774 2221
Q ss_pred ccccccccCCCceeeeEEee-------cCCCCCeeEEEEcCC-CCEEEEEeCCCcEEEEeCCCCeEEEEec--ccCCCEE
Q 006229 532 RVGRSAEVGKGFTFTEFQLI-------PASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLE--EHTQWIT 601 (655)
Q Consensus 532 ~~~~l~d~~~~~t~~~v~~l-------~gH~~~V~sl~fSpd-G~lLaSgs~DgtVrIWDl~t~~~l~tl~--gH~~~It 601 (655)
....+... .++......|+|+++ +.++++...++.|++||.++++.+.++. ++...+.
T Consensus 177 ------------~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~ 244 (329)
T 3fvz_A 177 ------------FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVF 244 (329)
T ss_dssp ------------EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEE
T ss_pred ------------EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcc
Confidence 00111000 122234789999998 7788888889999999999899988884 5677899
Q ss_pred EEEEcCCCCEEEEE-------eCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 602 DVRFSPSLSRLATS-------SADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 602 sVafsPdg~~LaSg-------S~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
+++|+| +..+++. +.+.+|++||+.+++.+..+..... .......++|+|+
T Consensus 245 ~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~--~~~~p~~ia~~~d 302 (329)
T 3fvz_A 245 AISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRK--HFDMPHDIVASED 302 (329)
T ss_dssp EEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSS--CCSSEEEEEECTT
T ss_pred eeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCC--ccCCeeEEEECCC
Confidence 999999 4444433 3455899999999999888742211 1122345666664
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=98.47 E-value=3.3e-06 Score=87.95 Aligned_cols=100 Identities=11% Similarity=0.110 Sum_probs=73.7
Q ss_pred EeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEE--cCCCCEEEEE-----------
Q 006229 549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF--SPSLSRLATS----------- 615 (655)
Q Consensus 549 ~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVaf--sPdg~~LaSg----------- 615 (655)
....++...+.++.|+|||+.|+.++.++.|++||+.+++....+..+...+....| +|++++|+..
T Consensus 74 ~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~ 153 (388)
T 3pe7_A 74 QLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLT 153 (388)
T ss_dssp ECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC
T ss_pred EeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCccccccc
Confidence 334455555667899999999999999999999999999888777777776655544 8999998753
Q ss_pred -----------eCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEec
Q 006229 616 -----------SADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAP 654 (655)
Q Consensus 616 -----------S~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P 654 (655)
..+..|.+||+.+++...... +.. .+..+.|+|
T Consensus 154 ~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~-----~~~~~~~sp 197 (388)
T 3pe7_A 154 DWKKFHEFYFTKPCCRLMRVDLKTGESTVILQ-ENQ-----WLGHPIYRP 197 (388)
T ss_dssp SHHHHHHHGGGCCCEEEEEEETTTCCEEEEEE-ESS-----CEEEEEEET
T ss_pred ccchhhhhhccCCcceEEEEECCCCceEEeec-CCc-----cccccEECC
Confidence 245689999999887544332 222 244667777
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=98.46 E-value=3.9e-06 Score=84.21 Aligned_cols=135 Identities=13% Similarity=0.141 Sum_probs=89.0
Q ss_pred ceeccCCCCceEEEEecCCCCcccc---------cCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCc
Q 006229 473 TLQHNGASSKSLLMFGSDGMGSLTS---------APNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGF 543 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~~las---------ss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~ 543 (655)
.+..+......+..|++++...... ....++..++++++.+.++.|.+|+. ++
T Consensus 133 ~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~-~g----------------- 194 (286)
T 1q7f_A 133 RIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EG----------------- 194 (286)
T ss_dssp CEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TC-----------------
T ss_pred CEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcC-CC-----------------
Confidence 3444444566777788766421111 11133444455555556677777743 11
Q ss_pred eeeeEEeec--CCCCCeeEEEEcCCCCEEEEEeCCC-cEEEEeCCCCeEEEEecccCC--CEEEEEEcCCCCEEEEEeCC
Q 006229 544 TFTEFQLIP--ASTSKVESCHFSPDGKLLATGGHDK-KAVLWCTESFTVKSTLEEHTQ--WITDVRFSPSLSRLATSSAD 618 (655)
Q Consensus 544 t~~~v~~l~--gH~~~V~sl~fSpdG~lLaSgs~Dg-tVrIWDl~t~~~l~tl~gH~~--~ItsVafsPdg~~LaSgS~D 618 (655)
..+..+. ++...+..|+|+++|+++++...++ .|++||. +++.+.++..+.. .+.+|+|+|+|+++++ +.|
T Consensus 195 --~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~ 270 (286)
T 1q7f_A 195 --QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKD 270 (286)
T ss_dssp --CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETT
T ss_pred --CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCC
Confidence 1222232 2335788999999999999888886 9999995 5677777765543 4889999999987777 679
Q ss_pred CcEEEEECCCC
Q 006229 619 RTVRVWDTENV 629 (655)
Q Consensus 619 gtVrVWDl~tg 629 (655)
++|+||++...
T Consensus 271 ~~v~v~~~~~~ 281 (286)
T 1q7f_A 271 YRLYIYRYVQL 281 (286)
T ss_dssp TEEEEEECSCC
T ss_pred CeEEEEEcccc
Confidence 99999998653
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=98.43 E-value=1.7e-06 Score=88.68 Aligned_cols=89 Identities=11% Similarity=0.090 Sum_probs=73.1
Q ss_pred eEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCC----CcEE
Q 006229 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD----RTVR 622 (655)
Q Consensus 547 ~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~D----gtVr 622 (655)
.+..+..+...+.+++|+++|++++++..++.|.+||..+++....+..+...|.+++|+|+|+++++...+ +.|.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~ 115 (333)
T 2dg1_A 36 PWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIF 115 (333)
T ss_dssp EEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEE
T ss_pred eeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEE
Confidence 344555666778999999999988899999999999999888776555677889999999999988888777 7899
Q ss_pred EEECCCCeEEEEE
Q 006229 623 VWDTENVRKLTFI 635 (655)
Q Consensus 623 VWDl~tg~~v~~l 635 (655)
+||..++.....+
T Consensus 116 ~~d~~~~~~~~~~ 128 (333)
T 2dg1_A 116 AATENGDNLQDII 128 (333)
T ss_dssp EECTTSCSCEEEE
T ss_pred EEeCCCCEEEEEE
Confidence 9999887654333
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.8e-06 Score=88.73 Aligned_cols=91 Identities=20% Similarity=0.216 Sum_probs=69.1
Q ss_pred CCeeEEEEcCCCCEEEEEeCC---C--cEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCC------------
Q 006229 556 SKVESCHFSPDGKLLATGGHD---K--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD------------ 618 (655)
Q Consensus 556 ~~V~sl~fSpdG~lLaSgs~D---g--tVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~D------------ 618 (655)
..+.++.|||||++|+.++.+ + .|.+||+.+++.......+ . |.+++|+|||++|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence 458899999999999887754 2 3788899888776555433 3 9999999999999888743
Q ss_pred ---------------CcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 619 ---------------RTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 619 ---------------gtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
..|.+||+.+++.+..+.. . .+..++|+|+
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~------~~~~~~~spd 181 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P------RFSSGIWHRD 181 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEEEEEEEE-E------TTCEEEEETT
T ss_pred cceeecCcccccCccceEEEEECCCCeEEeeecC-C------CcccccCCCC
Confidence 5699999999887555543 1 3556777775
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=98.39 E-value=1.3e-06 Score=94.67 Aligned_cols=87 Identities=9% Similarity=0.037 Sum_probs=73.2
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE
Q 006229 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLT 633 (655)
Q Consensus 554 H~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~ 633 (655)
+.. |+.|+| |+++|+++ .++.|++||+++......+..|...|.++.+.+. .+++++.||.|.+||+.++....
T Consensus 87 lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~ 160 (388)
T 1xip_A 87 IPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ 160 (388)
T ss_dssp CTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE
T ss_pred CCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc
Confidence 455 999999 99999999 8899999999988777777888889999888764 39999999999999999887643
Q ss_pred EEecccceeeeeceeeEEEecC
Q 006229 634 FICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 634 ~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
....|.+++|+|+
T Consensus 161 ---------~~~~Vs~v~WSpk 173 (388)
T 1xip_A 161 ---------LAQNVTSFDVTNS 173 (388)
T ss_dssp ---------EEESEEEEEECSS
T ss_pred ---------ccCCceEEEEcCC
Confidence 2346789999985
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=1.6e-05 Score=82.43 Aligned_cols=127 Identities=9% Similarity=0.051 Sum_probs=86.5
Q ss_pred ccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcC-CCCEEEEEe-CCCc
Q 006229 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGG-HDKK 578 (655)
Q Consensus 501 ~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSp-dG~lLaSgs-~Dgt 578 (655)
.++..++++++.+.++.|+.|+.... ...+... ... .....-.++......|+|+| +|.++++.+ .++.
T Consensus 97 a~d~~g~l~v~d~~~~~v~~~~~~g~----~~~~~~~--~~~---~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~ 167 (329)
T 3fvz_A 97 SIDTDGNYWVTDVALHQVFKLDPHSK----EGPLLIL--GRS---MQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSR 167 (329)
T ss_dssp EECTTSCEEEEETTTTEEEEECTTCS----SCCSEEE--SBT---TBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCE
T ss_pred EECCCCCEEEEECCCCEEEEEeCCCC----eEEEEEe--ccc---CCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCe
Confidence 34555567777777888888853211 0000000 000 00000123455688999999 898888887 6999
Q ss_pred EEEEeCCCCeEEEEecc----------cCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeEEEEEec
Q 006229 579 AVLWCTESFTVKSTLEE----------HTQWITDVRFSPS-LSRLATSSADRTVRVWDTENVRKLTFICC 637 (655)
Q Consensus 579 VrIWDl~t~~~l~tl~g----------H~~~ItsVafsPd-g~~LaSgS~DgtVrVWDl~tg~~v~~l~~ 637 (655)
|++|| .+++.+..+.. +-.....|+|+|+ +.++++.+.+++|++||..+++.+..+..
T Consensus 168 I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~ 236 (329)
T 3fvz_A 168 IVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKH 236 (329)
T ss_dssp EEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECC
T ss_pred EEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEec
Confidence 99999 56777777743 3344899999998 77788888899999999998998888753
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=98.31 E-value=2.1e-06 Score=90.96 Aligned_cols=103 Identities=12% Similarity=0.150 Sum_probs=78.8
Q ss_pred CCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeC----------CCcEEEEe
Q 006229 514 LDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH----------DKKAVLWC 583 (655)
Q Consensus 514 ~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~----------DgtVrIWD 583 (655)
.|++|.+|+..++ +.+..+..+..+ .++|+|||++|++++. |++|.+||
T Consensus 29 ~d~~v~v~D~~t~-------------------~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d 87 (361)
T 2oiz_A 29 TESRVHVYDYTNG-------------------KFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWD 87 (361)
T ss_dssp GGCEEEEEETTTC-------------------CEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEE
T ss_pred ccCeEEEEECCCC-------------------eEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEE
Confidence 4678888864433 233444444444 8999999999999873 67899999
Q ss_pred CCCCeEEEEeccc------CCCEEEEEEcCCCCEEEEEeC--CCcEEEEECCCCeEEEE-Eec
Q 006229 584 TESFTVKSTLEEH------TQWITDVRFSPSLSRLATSSA--DRTVRVWDTENVRKLTF-ICC 637 (655)
Q Consensus 584 l~t~~~l~tl~gH------~~~ItsVafsPdg~~LaSgS~--DgtVrVWDl~tg~~v~~-l~~ 637 (655)
+.+++.+.++..+ ......++|+|+|++|+++.. +++|.|||+.+++.+.. +..
T Consensus 88 ~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~ 150 (361)
T 2oiz_A 88 ADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA 150 (361)
T ss_dssp TTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG
T ss_pred CcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC
Confidence 9999988887632 345678999999999998874 68999999999988877 443
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.29 E-value=3.1e-05 Score=78.24 Aligned_cols=86 Identities=15% Similarity=0.134 Sum_probs=67.4
Q ss_pred ecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCC-CCeE---EEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 006229 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE-SFTV---KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (655)
Q Consensus 551 l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~-t~~~---l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl 626 (655)
+..+...+..++|+|||++|++.+.++.|++||+. +++. ...+..+...+.+|+++++|+++++. ++.|.+||.
T Consensus 167 ~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~ 244 (296)
T 3e5z_A 167 PIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTP 244 (296)
T ss_dssp EECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECT
T ss_pred eecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECC
Confidence 34555667899999999988888888999999997 5554 34444466678899999999977766 889999998
Q ss_pred CCCeEEEEEeccc
Q 006229 627 ENVRKLTFICCYK 639 (655)
Q Consensus 627 ~tg~~v~~l~~~~ 639 (655)
. ++.+..+..+.
T Consensus 245 ~-g~~~~~~~~~~ 256 (296)
T 3e5z_A 245 D-GDELGRVLTPQ 256 (296)
T ss_dssp T-SCEEEEEECSS
T ss_pred C-CCEEEEEECCC
Confidence 7 77777776554
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=98.27 E-value=4.5e-05 Score=77.98 Aligned_cols=108 Identities=10% Similarity=0.001 Sum_probs=74.2
Q ss_pred CcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCC----CcEEE
Q 006229 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD----KKAVL 581 (655)
Q Consensus 506 ~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~D----gtVrI 581 (655)
+++++++..++.|.+|+...+ ........+...|.+++|+++|++++++..+ +.|.+
T Consensus 56 g~l~~~~~~~~~i~~~d~~~~-------------------~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~ 116 (333)
T 2dg1_A 56 GQLFLLDVFEGNIFKINPETK-------------------EIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFA 116 (333)
T ss_dssp SCEEEEETTTCEEEEECTTTC-------------------CEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEE
T ss_pred CCEEEEECCCCEEEEEeCCCC-------------------cEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEE
Confidence 345566667788888844332 1111112355679999999999988887776 78999
Q ss_pred EeCCCCeEEEEec--ccCCCEEEEEEcCCCCEEEEEeC------CCcEEEEECCCCeEE
Q 006229 582 WCTESFTVKSTLE--EHTQWITDVRFSPSLSRLATSSA------DRTVRVWDTENVRKL 632 (655)
Q Consensus 582 WDl~t~~~l~tl~--gH~~~ItsVafsPdg~~LaSgS~------DgtVrVWDl~tg~~v 632 (655)
||.++++....+. .+...+++++|+|+|+++++... ++.|.+||..+++..
T Consensus 117 ~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~ 175 (333)
T 2dg1_A 117 ATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT 175 (333)
T ss_dssp ECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEE
T ss_pred EeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEE
Confidence 9998877654443 34567999999999998887764 245666666655443
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=5.4e-06 Score=95.29 Aligned_cols=71 Identities=10% Similarity=0.117 Sum_probs=58.4
Q ss_pred eeEEEEcCCCCEEEEEeCCCc----------------EEEEeCCCCe----EEEEecccCCCEEEEEEcCCCCEEEEEeC
Q 006229 558 VESCHFSPDGKLLATGGHDKK----------------AVLWCTESFT----VKSTLEEHTQWITDVRFSPSLSRLATSSA 617 (655)
Q Consensus 558 V~sl~fSpdG~lLaSgs~Dgt----------------VrIWDl~t~~----~l~tl~gH~~~ItsVafsPdg~~LaSgS~ 617 (655)
+.+++|+|||+.|+.++.|+. |++|++.++. ++.....|...+.++.|+|||++|+.++.
T Consensus 173 ~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~ 252 (710)
T 2xdw_A 173 FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIR 252 (710)
T ss_dssp SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEE
T ss_pred cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEE
Confidence 678999999999999988876 9999998875 33333346677899999999999888775
Q ss_pred -----CCcEEEEECCC
Q 006229 618 -----DRTVRVWDTEN 628 (655)
Q Consensus 618 -----DgtVrVWDl~t 628 (655)
+..|++||+.+
T Consensus 253 ~~~~~~~~l~~~d~~~ 268 (710)
T 2xdw_A 253 EGCDPVNRLWYCDLQQ 268 (710)
T ss_dssp CSSSSCCEEEEEEGGG
T ss_pred ccCCCccEEEEEECcc
Confidence 56899999986
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.22 E-value=8.6e-06 Score=93.48 Aligned_cols=101 Identities=9% Similarity=-0.051 Sum_probs=72.4
Q ss_pred eccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCc------------
Q 006229 511 DGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKK------------ 578 (655)
Q Consensus 511 sGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~Dgt------------ 578 (655)
.|+.+.+|++|+..++... . ...+.. ....+++|+|||+.|+.++.|..
T Consensus 142 ~G~~~~~i~v~dl~tg~~~-----~------------~~~~~~--~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~ 202 (695)
T 2bkl_A 142 NAADEAVLHVIDVDSGEWS-----K------------VDVIEG--GKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYT 202 (695)
T ss_dssp TTCSCCEEEEEETTTCCBC-----S------------SCCBSC--CTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGC
T ss_pred CCCceEEEEEEECCCCCCc-----C------------CcccCc--ccccceEEecCCCEEEEEEecCCCCCccccCCCCC
Confidence 5666788999977655210 0 001111 11257999999999999999887
Q ss_pred -EEEEeCCCCe----EEEEecccCCCEEEEEEcCCCCEEEEEeCCC----cEEEEECCCCe
Q 006229 579 -AVLWCTESFT----VKSTLEEHTQWITDVRFSPSLSRLATSSADR----TVRVWDTENVR 630 (655)
Q Consensus 579 -VrIWDl~t~~----~l~tl~gH~~~ItsVafsPdg~~LaSgS~Dg----tVrVWDl~tg~ 630 (655)
|++|++.++. ++....+|...+.++.|+|||++|+.++.++ .|++||..++.
T Consensus 203 ~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~ 263 (695)
T 2bkl_A 203 TIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD 263 (695)
T ss_dssp EEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS
T ss_pred EEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc
Confidence 9999998775 4444455777899999999999998888766 67777765554
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=3.9e-05 Score=86.94 Aligned_cols=111 Identities=11% Similarity=-0.025 Sum_probs=86.8
Q ss_pred cEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCC-
Q 006229 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE- 585 (655)
Q Consensus 507 ~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~- 585 (655)
.++++...+++|.+|+..+. +.+.++... ..+.++.|+|||++|++++.|+.|.+||+.
T Consensus 168 ~~~V~~~~~~~V~viD~~t~-------------------~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~ 227 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGSTY-------------------EIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWM 227 (567)
T ss_dssp EEEEEETTTTEEEEEETTTC-------------------CEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTS
T ss_pred eEEEEeCCCCeEEEEECCCC-------------------eEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCC
Confidence 45667778889999965444 334444322 346689999999999999999999999996
Q ss_pred -CCeEEEEecccCCCEEEEEEc----CCCCEEEEEeC-CCcEEEEECCCCeEEEEEecc
Q 006229 586 -SFTVKSTLEEHTQWITDVRFS----PSLSRLATSSA-DRTVRVWDTENVRKLTFICCY 638 (655)
Q Consensus 586 -t~~~l~tl~gH~~~ItsVafs----Pdg~~LaSgS~-DgtVrVWDl~tg~~v~~l~~~ 638 (655)
+++.+.++.... ....++|+ |||+++++++. +++|.|||..+.+.+.++...
T Consensus 228 ~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~ 285 (567)
T 1qks_A 228 KEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTR 285 (567)
T ss_dssp SSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECC
T ss_pred CCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecc
Confidence 888888886433 46789999 79999888775 689999999999998887643
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=98.09 E-value=5.3e-05 Score=77.40 Aligned_cols=108 Identities=12% Similarity=0.017 Sum_probs=86.8
Q ss_pred CcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCC-CCeeEEEEcCCCCEEEEEeCCCcEEEEeC
Q 006229 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST-SKVESCHFSPDGKLLATGGHDKKAVLWCT 584 (655)
Q Consensus 506 ~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~-~~V~sl~fSpdG~lLaSgs~DgtVrIWDl 584 (655)
+.+|++++.|+.|.+|+..++ +.+..+..+. ..+.++.++|+|++|+ +.++.|.+||.
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG-------------------~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~ 63 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTK-------------------EIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR 63 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTT-------------------EEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT
T ss_pred CcEEEeeCCCCEEEEEECCCC-------------------eEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC
Confidence 378899999999999976555 3445555554 4688999999999988 45788999999
Q ss_pred CCCeEEEEecccC-CCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCeEEEEEe
Q 006229 585 ESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSA-DRTVRVWDTENVRKLTFIC 636 (655)
Q Consensus 585 ~t~~~l~tl~gH~-~~ItsVafsPdg~~LaSgS~-DgtVrVWDl~tg~~v~~l~ 636 (655)
+++.+..+..+. ..+.++.+.++|++|++.+. +++|..+|. +|+.+..+.
T Consensus 64 -~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~ 115 (276)
T 3no2_A 64 -DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTE 115 (276)
T ss_dssp -TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEE
T ss_pred -CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEe
Confidence 899998888653 57899999999999999888 778888886 677776664
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.09 E-value=3.8e-05 Score=78.76 Aligned_cols=71 Identities=14% Similarity=0.133 Sum_probs=54.5
Q ss_pred eeEEEEcCCCCEEEEEeCC---------------------------CcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCC
Q 006229 558 VESCHFSPDGKLLATGGHD---------------------------KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 610 (655)
Q Consensus 558 V~sl~fSpdG~lLaSgs~D---------------------------gtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~ 610 (655)
|.++.|+|||+.|+.++.+ ..|.+||+.+++.+..+.. . .+.+++|+|+|
T Consensus 106 ~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg- 182 (347)
T 2gop_A 106 IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK- 182 (347)
T ss_dssp EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-
T ss_pred ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-
Confidence 8999999999988887743 5789999999887556655 4 88999999999
Q ss_pred EEEEEeCCC-------cEEEEECCCCeE
Q 006229 611 RLATSSADR-------TVRVWDTENVRK 631 (655)
Q Consensus 611 ~LaSgS~Dg-------tVrVWDl~tg~~ 631 (655)
++++++.+. ..+||.+.+++.
T Consensus 183 ~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 210 (347)
T 2gop_A 183 IVVNVPHREIIPQYFKFWDIYIWEDGKE 210 (347)
T ss_dssp EEEEEECCCSSCCSSCCEEEEEEETTEE
T ss_pred EEEEEecccccccccccccEEEeCCCce
Confidence 888887653 445555545543
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=98.09 E-value=8.7e-05 Score=75.76 Aligned_cols=142 Identities=14% Similarity=0.052 Sum_probs=96.9
Q ss_pred ceeccCCCCceEEEEec-CCCCcccc--------cCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCc
Q 006229 473 TLQHNGASSKSLLMFGS-DGMGSLTS--------APNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGF 543 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~-dg~~~las--------ss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~ 543 (655)
.++..++.+..+.+|+. +|+..... ....+.+.+++++ +.++.|..|+. ++
T Consensus 6 ~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G----------------- 65 (276)
T 3no2_A 6 HLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DG----------------- 65 (276)
T ss_dssp EEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TS-----------------
T ss_pred cEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CC-----------------
Confidence 56777788888888988 55322111 1112334445555 23555666643 32
Q ss_pred eeeeEEeecCC-CCCeeEEEEcCCCCEEEEEeC-CCcEEEEeCCCCeEEEEec------ccCCCEEEEEEcCCCCEEEEE
Q 006229 544 TFTEFQLIPAS-TSKVESCHFSPDGKLLATGGH-DKKAVLWCTESFTVKSTLE------EHTQWITDVRFSPSLSRLATS 615 (655)
Q Consensus 544 t~~~v~~l~gH-~~~V~sl~fSpdG~lLaSgs~-DgtVrIWDl~t~~~l~tl~------gH~~~ItsVafsPdg~~LaSg 615 (655)
+.+..+..+ ...+.++.+.+||++|++.+. ++.|..+|. +++.+..+. ++......+++.++|.+|++.
T Consensus 66 --~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~ 142 (276)
T 3no2_A 66 --RELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPL 142 (276)
T ss_dssp --CEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEE
T ss_pred --CEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEe
Confidence 233334433 246889999999999999887 777888885 677776664 233356677889999999999
Q ss_pred eCCCcEEEEECCCCeEEEEEecc
Q 006229 616 SADRTVRVWDTENVRKLTFICCY 638 (655)
Q Consensus 616 S~DgtVrVWDl~tg~~v~~l~~~ 638 (655)
+.+++|.+||.. |+.+..+...
T Consensus 143 ~~~~~v~~~d~~-G~~~w~~~~~ 164 (276)
T 3no2_A 143 FATSEVREIAPN-GQLLNSVKLS 164 (276)
T ss_dssp TTTTEEEEECTT-SCEEEEEECS
T ss_pred cCCCEEEEECCC-CCEEEEEECC
Confidence 999999999998 8888887654
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.09 E-value=2.3e-05 Score=79.12 Aligned_cols=84 Identities=8% Similarity=0.041 Sum_probs=70.6
Q ss_pred EeecCCCCCeeEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 006229 549 QLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (655)
Q Consensus 549 ~~l~gH~~~V~sl~fSpdG~-lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~ 627 (655)
..+..+.....+++|+|+|+ +++++..++.|.+||..++ ...+..+...+.+|+|+|+|+++++...++.|.+||..
T Consensus 21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~ 98 (296)
T 3e5z_A 21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREP 98 (296)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECST
T ss_pred EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCC
Confidence 33445556688999999998 8888889999999999887 66777788889999999999988888788999999998
Q ss_pred CCeEEEE
Q 006229 628 NVRKLTF 634 (655)
Q Consensus 628 tg~~v~~ 634 (655)
+++....
T Consensus 99 ~g~~~~~ 105 (296)
T 3e5z_A 99 GGEWESI 105 (296)
T ss_dssp TCCEEEE
T ss_pred CCcEEEE
Confidence 8876543
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.08 E-value=8e-06 Score=84.78 Aligned_cols=90 Identities=11% Similarity=0.030 Sum_probs=65.2
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEE-------------------EEEcCCCCEEEEE----
Q 006229 559 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITD-------------------VRFSPSLSRLATS---- 615 (655)
Q Consensus 559 ~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~Its-------------------VafsPdg~~LaSg---- 615 (655)
.++.|+|||++|+.++.++.|++||+.+++....+..+.....+ ++|+|++++++.+
T Consensus 84 ~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~ 163 (396)
T 3c5m_A 84 FGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYH 163 (396)
T ss_dssp TTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHH
T ss_pred ccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeecc
Confidence 34889999999999999999999999998877666655554433 4567888776654
Q ss_pred -eCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEec
Q 006229 616 -SADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAP 654 (655)
Q Consensus 616 -S~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P 654 (655)
..+..|++||+.+++........ ..+..+.|+|
T Consensus 164 ~~~~~~l~~~d~~~g~~~~~~~~~------~~~~~~~~sp 197 (396)
T 3c5m_A 164 TNPTCRLIKVDIETGELEVIHQDT------AWLGHPIYRP 197 (396)
T ss_dssp TCCCEEEEEEETTTCCEEEEEEES------SCEEEEEEET
T ss_pred CCCcceEEEEECCCCcEEeeccCC------cccccceECC
Confidence 45678999999988765444221 2244566666
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.06 E-value=7.2e-06 Score=85.14 Aligned_cols=82 Identities=15% Similarity=0.036 Sum_probs=64.0
Q ss_pred eeEEEEcCCCCEEEEEeCC---CcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 006229 558 VESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTF 634 (655)
Q Consensus 558 V~sl~fSpdG~lLaSgs~D---gtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~ 634 (655)
+.+++|||||++|+..+.+ ..|.+||+.+++......++...+..+.|+|||++|+.++.++.|++||+.+++....
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~ 117 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVI 117 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEE
Confidence 7889999999998877543 4688899999887654444443344588999999999999999999999998887665
Q ss_pred Eeccc
Q 006229 635 ICCYK 639 (655)
Q Consensus 635 l~~~~ 639 (655)
+..+.
T Consensus 118 ~~~~~ 122 (396)
T 3c5m_A 118 YTVDE 122 (396)
T ss_dssp EECCT
T ss_pred Eeccc
Confidence 55443
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.06 E-value=5.7e-06 Score=94.96 Aligned_cols=76 Identities=12% Similarity=0.033 Sum_probs=60.9
Q ss_pred CCCCCeeEEEEcCCCCEEE-----EEeCCCcEEEEeCCCCeEEEEecccCCCE--EEEEEcCCCCEEEEEeCCCc-----
Q 006229 553 ASTSKVESCHFSPDGKLLA-----TGGHDKKAVLWCTESFTVKSTLEEHTQWI--TDVRFSPSLSRLATSSADRT----- 620 (655)
Q Consensus 553 gH~~~V~sl~fSpdG~lLa-----Sgs~DgtVrIWDl~t~~~l~tl~gH~~~I--tsVafsPdg~~LaSgS~Dgt----- 620 (655)
+|...|.+++|||||++|| +|+.+.+|+|||+.+++.+. ..+...+ .+++|+|||+.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~ 195 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKV 195 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCcc
Confidence 4555788999999999988 45556799999999988641 1232233 68999999999999999887
Q ss_pred --------EEEEECCCCe
Q 006229 621 --------VRVWDTENVR 630 (655)
Q Consensus 621 --------VrVWDl~tg~ 630 (655)
|++|++.++.
T Consensus 196 ~~~~~~~~v~~~~l~t~~ 213 (695)
T 2bkl_A 196 DERPGYTTIRYHTLGTEP 213 (695)
T ss_dssp GGGGGGCEEEEEETTSCG
T ss_pred ccCCCCCEEEEEECCCCc
Confidence 9999998876
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=1.1e-05 Score=92.85 Aligned_cols=76 Identities=11% Similarity=0.055 Sum_probs=61.8
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCC-----cEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCc--------
Q 006229 554 STSKVESCHFSPDGKLLATGGHDK-----KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT-------- 620 (655)
Q Consensus 554 H~~~V~sl~fSpdG~lLaSgs~Dg-----tVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~Dgt-------- 620 (655)
|+..+.+++|||||++||.++.++ +|+|||+.+++.+.....+. .+.+++|+|||+.|+.++.|+.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~-~~~~~~wspDg~~l~~~~~~~~~~~~~~~~ 201 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERV-KFSCMAWTHDGKGMFYNAYPQQDGKSDGTE 201 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEE-CSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCc-ccceEEEEeCCCEEEEEEECCccccccccc
Confidence 444688999999999998876544 89999999998876433222 3778999999999999998876
Q ss_pred --------EEEEECCCCe
Q 006229 621 --------VRVWDTENVR 630 (655)
Q Consensus 621 --------VrVWDl~tg~ 630 (655)
|++|++.++.
T Consensus 202 ~~~~~~~~v~~~~l~t~~ 219 (710)
T 2xdw_A 202 TSTNLHQKLYYHVLGTDQ 219 (710)
T ss_dssp CCCCCCCEEEEEETTSCG
T ss_pred cccCCCCEEEEEECCCCc
Confidence 9999998875
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00013 Score=71.98 Aligned_cols=76 Identities=9% Similarity=-0.015 Sum_probs=62.3
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE
Q 006229 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRK 631 (655)
Q Consensus 556 ~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~ 631 (655)
..+.+|+++++|+++++...++.|.+||..+.........+...+.+|+++++|.++++...++.|.+||..+...
T Consensus 150 ~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~ 225 (270)
T 1rwi_B 150 NDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS 225 (270)
T ss_dssp CSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCC
T ss_pred CCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcc
Confidence 4578899999999888877889999999988766554444557799999999998888888899999999976543
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00021 Score=70.33 Aligned_cols=77 Identities=13% Similarity=0.042 Sum_probs=61.0
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE
Q 006229 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKL 632 (655)
Q Consensus 556 ~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v 632 (655)
..+.+++++++|+++++...++.|.+||..+.........+...+++|+++++|+++++...++.|.+||..+....
T Consensus 108 ~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~ 184 (270)
T 1rwi_B 108 NYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQV 184 (270)
T ss_dssp SSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEE
T ss_pred CCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceE
Confidence 46889999999998888888899999987665544333344457889999999998888878899999999876544
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00049 Score=77.91 Aligned_cols=146 Identities=16% Similarity=0.084 Sum_probs=96.8
Q ss_pred eeccCCCCceEEEEecCCCCccc-------ccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceee
Q 006229 474 LQHNGASSKSLLMFGSDGMGSLT-------SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFT 546 (655)
Q Consensus 474 ~~~s~S~d~s~l~ws~dg~~~la-------sss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~ 546 (655)
+..+...+..+.+++.+....+. .....+.+.++++.+++.|+.|.+|+.... +.+
T Consensus 169 ~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~-----------------t~~ 231 (567)
T 1qks_A 169 FSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMK-----------------EPT 231 (567)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSS-----------------SCC
T ss_pred EEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCC-----------------CCc
Confidence 44455566777777776532211 112245666678877888888888864311 112
Q ss_pred eEEeecCCCCCeeEEEEc----CCCCEEEEEeC-CCcEEEEeCCCCeEEEEecc----------cCC-------------
Q 006229 547 EFQLIPASTSKVESCHFS----PDGKLLATGGH-DKKAVLWCTESFTVKSTLEE----------HTQ------------- 598 (655)
Q Consensus 547 ~v~~l~gH~~~V~sl~fS----pdG~lLaSgs~-DgtVrIWDl~t~~~l~tl~g----------H~~------------- 598 (655)
.+..+... .....++|+ |||++++++++ +++|.|+|..+++.+.++.- |..
T Consensus 232 ~v~~i~~G-~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~ 310 (567)
T 1qks_A 232 TVAEIKIG-SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRP 310 (567)
T ss_dssp EEEEEECC-SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSS
T ss_pred EeEEEecC-CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCC
Confidence 33444432 235689999 69998888775 48999999998887766531 111
Q ss_pred --------------------------------CEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeEEEEEec
Q 006229 599 --------------------------------WITDVRFSPSLSRLATSS-ADRTVRVWDTENVRKLTFICC 637 (655)
Q Consensus 599 --------------------------------~ItsVafsPdg~~LaSgS-~DgtVrVWDl~tg~~v~~l~~ 637 (655)
...++.|+|++++|++++ .+.+|.+||+.+++.+..+..
T Consensus 311 ~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~v 382 (567)
T 1qks_A 311 EFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDT 382 (567)
T ss_dssp EEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred EEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEec
Confidence 123568999999987766 578999999999988877755
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00025 Score=71.37 Aligned_cols=80 Identities=14% Similarity=0.218 Sum_probs=65.0
Q ss_pred EeecCCC-CCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEE-EEeCCCcEEEEEC
Q 006229 549 QLIPAST-SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWDT 626 (655)
Q Consensus 549 ~~l~gH~-~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~La-SgS~DgtVrVWDl 626 (655)
..+.++. ..+..++++++|+++++...++.|.+||.++++.+..+..+...+++++|+|++++|+ +...++.|.+||+
T Consensus 218 ~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~ 297 (314)
T 1pjx_A 218 GHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW 297 (314)
T ss_dssp EECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred EECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeC
Confidence 3344444 5678899999999988888889999999988887777777778899999999999554 5556789999998
Q ss_pred CC
Q 006229 627 EN 628 (655)
Q Consensus 627 ~t 628 (655)
..
T Consensus 298 ~~ 299 (314)
T 1pjx_A 298 QR 299 (314)
T ss_dssp SS
T ss_pred CC
Confidence 74
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00011 Score=84.91 Aligned_cols=80 Identities=13% Similarity=-0.034 Sum_probs=59.3
Q ss_pred eeEEEEcCCCCEEEEEeCCCc--------------EEEEeCCCCe----EEEEecccCCCEEEEEEcCCCCEEEEEeCCC
Q 006229 558 VESCHFSPDGKLLATGGHDKK--------------AVLWCTESFT----VKSTLEEHTQWITDVRFSPSLSRLATSSADR 619 (655)
Q Consensus 558 V~sl~fSpdG~lLaSgs~Dgt--------------VrIWDl~t~~----~l~tl~gH~~~ItsVafsPdg~~LaSgS~Dg 619 (655)
+..++|+|| +.|+.++.|+. |++|++.++. ++.....|...+.++.|+|||++|+..+.++
T Consensus 211 ~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~ 289 (741)
T 1yr2_A 211 FSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEG 289 (741)
T ss_dssp SCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECT
T ss_pred eccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEcc
Confidence 457899999 98888887665 8999997764 3333334555689999999999988887654
Q ss_pred -----cEEEEECCCC--eEEEEEecc
Q 006229 620 -----TVRVWDTENV--RKLTFICCY 638 (655)
Q Consensus 620 -----tVrVWDl~tg--~~v~~l~~~ 638 (655)
.|++||+.++ .++..+..+
T Consensus 290 ~~~~~~l~~~d~~~~~~~~~~~l~~~ 315 (741)
T 1yr2_A 290 TDPVNTVHVARVTNGKIGPVTALIPD 315 (741)
T ss_dssp TCSCCEEEEEEEETTEECCCEEEECS
T ss_pred CCCcceEEEEECCCCCCcccEEecCC
Confidence 7999999877 324445443
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00037 Score=70.06 Aligned_cols=94 Identities=12% Similarity=0.039 Sum_probs=68.1
Q ss_pred CCeeEEEEc----CCCCEEEE-EeCCCcEEEEeCC-CCe-----EEEEecccC-CCEEEEEEcCCCCEEEEEeCCCcEEE
Q 006229 556 SKVESCHFS----PDGKLLAT-GGHDKKAVLWCTE-SFT-----VKSTLEEHT-QWITDVRFSPSLSRLATSSADRTVRV 623 (655)
Q Consensus 556 ~~V~sl~fS----pdG~lLaS-gs~DgtVrIWDl~-t~~-----~l~tl~gH~-~~ItsVafsPdg~~LaSgS~DgtVrV 623 (655)
.....++|+ ++++.|+. ...++.|.+||++ +++ ....+.++. ..+..++++++|.++++...++.|.+
T Consensus 172 ~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~ 251 (314)
T 1pjx_A 172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEV 251 (314)
T ss_dssp SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred CCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEE
Confidence 346789999 99975544 4568899999986 454 333444554 67899999999999998888999999
Q ss_pred EECCCCeEEEEEecccceeeeeceeeEEEec
Q 006229 624 WDTENVRKLTFICCYKCIFVSTAIGSCFFAP 654 (655)
Q Consensus 624 WDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P 654 (655)
||..+++.+..+..+.. .+.+++|+|
T Consensus 252 ~d~~~g~~~~~~~~~~~-----~~~~i~~~~ 277 (314)
T 1pjx_A 252 FGPDGGQPKMRIRCPFE-----KPSNLHFKP 277 (314)
T ss_dssp ECTTCBSCSEEEECSSS-----CEEEEEECT
T ss_pred EcCCCCcEeEEEeCCCC-----CceeEEECC
Confidence 99987776666654422 234555554
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00046 Score=70.23 Aligned_cols=93 Identities=13% Similarity=0.042 Sum_probs=69.9
Q ss_pred CCeeEEEEcCCCCEE-EEEeCCCcEEEEeC--CCCeE-----EEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 006229 556 SKVESCHFSPDGKLL-ATGGHDKKAVLWCT--ESFTV-----KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (655)
Q Consensus 556 ~~V~sl~fSpdG~lL-aSgs~DgtVrIWDl--~t~~~-----l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~ 627 (655)
.....++|+||++.| ++.+.++.|.+||+ .++.. +..+..+...+..++++++|++.++...++.|.+||..
T Consensus 149 ~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~ 228 (297)
T 3g4e_A 149 DISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPV 228 (297)
T ss_dssp SBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTT
T ss_pred ccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCC
Confidence 345789999999866 45566789999987 45543 23344455678899999999988888888899999999
Q ss_pred CCeEEEEEecccceeeeeceeeEEEe
Q 006229 628 NVRKLTFICCYKCIFVSTAIGSCFFA 653 (655)
Q Consensus 628 tg~~v~~l~~~~~~v~s~~Vss~~F~ 653 (655)
+++.+..+..+... +.+|+|.
T Consensus 229 tG~~~~~i~~p~~~-----~t~~~f~ 249 (297)
T 3g4e_A 229 TGKRLQTVKLPVDK-----TTSCCFG 249 (297)
T ss_dssp TCCEEEEEECSSSB-----EEEEEEE
T ss_pred CceEEEEEECCCCC-----ceEEEEe
Confidence 99998888765432 3456665
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00039 Score=75.10 Aligned_cols=91 Identities=12% Similarity=0.057 Sum_probs=69.7
Q ss_pred eeEEeecCCCCCeeEEEEcCCCCEEEEEe----------CCCcEEEEeCCCCeEEEEeccc-------CCCEEEEEEcCC
Q 006229 546 TEFQLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEH-------TQWITDVRFSPS 608 (655)
Q Consensus 546 ~~v~~l~gH~~~V~sl~fSpdG~lLaSgs----------~DgtVrIWDl~t~~~l~tl~gH-------~~~ItsVafsPd 608 (655)
+.+.++..-..+ .+.++|||++|++++ .++.|.+||..+++.+.++.-. ...-..++|+||
T Consensus 70 ~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spD 147 (386)
T 3sjl_D 70 RVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPD 147 (386)
T ss_dssp EEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTT
T ss_pred eEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCC
Confidence 444444433333 499999999887775 3678999999999998887421 124567899999
Q ss_pred CCEEEEEeC--CCcEEEEECCCCeEEEEEecc
Q 006229 609 LSRLATSSA--DRTVRVWDTENVRKLTFICCY 638 (655)
Q Consensus 609 g~~LaSgS~--DgtVrVWDl~tg~~v~~l~~~ 638 (655)
|++|+.+.. +++|.|+|+.+++.+.++...
T Consensus 148 Gk~lyVan~~~~~~VsVID~~t~~vv~tI~v~ 179 (386)
T 3sjl_D 148 GKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP 179 (386)
T ss_dssp SSEEEEEECSSSCEEEEEETTTTEEEEEEECC
T ss_pred CCEEEEEEcCCCCeEEEEECCCCcEEEEEECC
Confidence 999988874 689999999999999888643
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00092 Score=69.26 Aligned_cols=83 Identities=8% Similarity=-0.075 Sum_probs=63.5
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEE--ecccCCCEEEEEEcC-CCCEEEEE----eCCCcEEEEECCC
Q 006229 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST--LEEHTQWITDVRFSP-SLSRLATS----SADRTVRVWDTEN 628 (655)
Q Consensus 556 ~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~t--l~gH~~~ItsVafsP-dg~~LaSg----S~DgtVrVWDl~t 628 (655)
.....++|+||+++|+++.. +|.+||+.+++.... +..+......++++| ++..+++. ..+++|.+||..
T Consensus 225 ~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~- 301 (328)
T 3dsm_A 225 DWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ- 301 (328)
T ss_dssp CCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-
T ss_pred CCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-
Confidence 35789999999998888765 899999998875421 222246789999999 55666666 678899999998
Q ss_pred CeEEEEEecccce
Q 006229 629 VRKLTFICCYKCI 641 (655)
Q Consensus 629 g~~v~~l~~~~~~ 641 (655)
++.+..+..+..+
T Consensus 302 g~~~~~i~~G~~P 314 (328)
T 3dsm_A 302 GKLIDEFYVGIIP 314 (328)
T ss_dssp CCEEEEEEEEESE
T ss_pred CCEEEEEEeccCc
Confidence 8888888765443
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00065 Score=70.42 Aligned_cols=110 Identities=11% Similarity=-0.052 Sum_probs=75.0
Q ss_pred cEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 006229 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (655)
Q Consensus 507 ~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t 586 (655)
++.++...++.|.+|+..++ +.+.++.. ......++|+++++++++...++.|.+||..+
T Consensus 55 ~lyv~~~~~~~v~viD~~t~-------------------~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t 114 (328)
T 3dsm_A 55 IGWIVVNNSHVIFAIDINTF-------------------KEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKT 114 (328)
T ss_dssp EEEEEEGGGTEEEEEETTTC-------------------CEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTT
T ss_pred EEEEEEcCCCEEEEEECccc-------------------EEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCC
Confidence 33344445667777754433 33444432 35678999999996666555899999999999
Q ss_pred CeEEEEecccC-----CCEEEEEEcCCCCEEEEEe--CCCcEEEEECCCCeEEEEEecc
Q 006229 587 FTVKSTLEEHT-----QWITDVRFSPSLSRLATSS--ADRTVRVWDTENVRKLTFICCY 638 (655)
Q Consensus 587 ~~~l~tl~gH~-----~~ItsVafsPdg~~LaSgS--~DgtVrVWDl~tg~~v~~l~~~ 638 (655)
++.+.++.... .....|++ ++..|+.+. .+++|.+||+.+++.+..+...
T Consensus 115 ~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g 171 (328)
T 3dsm_A 115 YEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG 171 (328)
T ss_dssp TEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS
T ss_pred CeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC
Confidence 99887775332 14566777 345555444 4899999999999988777643
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.0014 Score=66.88 Aligned_cols=123 Identities=7% Similarity=-0.054 Sum_probs=79.5
Q ss_pred eeccCCCCceEEEEecCCCCcccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecC
Q 006229 474 LQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA 553 (655)
Q Consensus 474 ~~~s~S~d~s~l~ws~dg~~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~g 553 (655)
.+..+..-....+|++++. .++.++..++.|..|.. ++ .+..+..
T Consensus 39 ~l~~~~~~~egp~~~~~g~--------------~l~~~d~~~~~i~~~~~-~g--------------------~~~~~~~ 83 (305)
T 3dr2_A 39 TLYDQATWSEGPAWWEAQR--------------TLVWSDLVGRRVLGWRE-DG--------------------TVDVLLD 83 (305)
T ss_dssp EEECCCSSEEEEEEEGGGT--------------EEEEEETTTTEEEEEET-TS--------------------CEEEEEE
T ss_pred EEecCCcCccCCeEeCCCC--------------EEEEEECCCCEEEEEeC-CC--------------------CEEEEeC
Confidence 3444444555667777655 45666667777877743 22 1122333
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec---cc-CCCEEEEEEcCCCCEEEE----EeC--------
Q 006229 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE---EH-TQWITDVRFSPSLSRLAT----SSA-------- 617 (655)
Q Consensus 554 H~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~---gH-~~~ItsVafsPdg~~LaS----gS~-------- 617 (655)
+...+..++|+++|+++++...++.|.+||.+ ++...... +. ...+++++++|+|++++| |..
T Consensus 84 ~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~ 162 (305)
T 3dr2_A 84 ATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPA 162 (305)
T ss_dssp SCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCC
T ss_pred CCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCcccccccccc
Confidence 45668899999999977776667899999986 55432222 11 235788999999999887 332
Q ss_pred -----CCcEEEEECCCCeEE
Q 006229 618 -----DRTVRVWDTENVRKL 632 (655)
Q Consensus 618 -----DgtVrVWDl~tg~~v 632 (655)
.+.|..||..+++..
T Consensus 163 ~~~~~~~~v~~~d~~~g~~~ 182 (305)
T 3dr2_A 163 DPELAHHSVYRLPPDGSPLQ 182 (305)
T ss_dssp CCSSSCEEEEEECSSSCCCE
T ss_pred ccccCCCeEEEEcCCCCcEE
Confidence 246778887666543
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.001 Score=70.93 Aligned_cols=77 Identities=9% Similarity=-0.032 Sum_probs=62.2
Q ss_pred EEEEcCCCCEEEEEe----------CCCcEEEEeCCCCeEEEEeccc-------CCCEEEEEEcCCCCEEEEEeC--CCc
Q 006229 560 SCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEH-------TQWITDVRFSPSLSRLATSSA--DRT 620 (655)
Q Consensus 560 sl~fSpdG~lLaSgs----------~DgtVrIWDl~t~~~l~tl~gH-------~~~ItsVafsPdg~~LaSgS~--Dgt 620 (655)
.++|||||++|+.+. .+++|.+||..+++.+.++.-- ...-..++|+|||++|+.++. +..
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 899999999988886 3678999999998888776421 123458999999999998874 578
Q ss_pred EEEEECCCCeEEEE-Eec
Q 006229 621 VRVWDTENVRKLTF-ICC 637 (655)
Q Consensus 621 VrVWDl~tg~~v~~-l~~ 637 (655)
|.++| .+++.+.. +..
T Consensus 150 v~viD-~t~~~~~~~i~~ 166 (373)
T 2mad_H 150 VGLVV-QGGSSDDQLLSS 166 (373)
T ss_pred EEEEE-CCCCEEeEEcCC
Confidence 99999 99988877 654
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.006 Score=60.19 Aligned_cols=78 Identities=8% Similarity=0.027 Sum_probs=61.9
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE-EecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE
Q 006229 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKL 632 (655)
Q Consensus 554 H~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~-tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v 632 (655)
....+.+++++++|+++++...++.|.+||. +++... .+..+...+.+++++++|+.+++...++.|.+||. +++..
T Consensus 97 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~ 174 (299)
T 2z2n_A 97 PDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDIT 174 (299)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE
T ss_pred cCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEE
Confidence 4457899999999998888888899999998 555443 23345667999999999988888877889999999 66554
Q ss_pred E
Q 006229 633 T 633 (655)
Q Consensus 633 ~ 633 (655)
.
T Consensus 175 ~ 175 (299)
T 2z2n_A 175 E 175 (299)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0021 Score=74.13 Aligned_cols=79 Identities=13% Similarity=0.033 Sum_probs=58.5
Q ss_pred eecCCCCCeeEEEEcCCCCEEEEEeCCC-----cEEEEeCCCC--eEEEEecccCCCEEEEEEcCCCCEEEEEeCC----
Q 006229 550 LIPASTSKVESCHFSPDGKLLATGGHDK-----KAVLWCTESF--TVKSTLEEHTQWITDVRFSPSLSRLATSSAD---- 618 (655)
Q Consensus 550 ~l~gH~~~V~sl~fSpdG~lLaSgs~Dg-----tVrIWDl~t~--~~l~tl~gH~~~ItsVafsPdg~~LaSgS~D---- 618 (655)
....+...+.++.|||||++|+..+.++ .|++||+.++ ++...+..+...+.... +|+|..|+..+.+
T Consensus 262 ~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~ 340 (741)
T 1yr2_A 262 ATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPL 340 (741)
T ss_dssp CCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTT
T ss_pred ccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCC
Confidence 3334444688999999999888877654 8999999887 32456666666666554 4899988888764
Q ss_pred CcEEEEECCCC
Q 006229 619 RTVRVWDTENV 629 (655)
Q Consensus 619 gtVrVWDl~tg 629 (655)
+.|.+||+.++
T Consensus 341 ~~l~~~d~~~~ 351 (741)
T 1yr2_A 341 KKIVRVDLSGS 351 (741)
T ss_dssp CEEEEEECSSS
T ss_pred CEEEEEeCCCC
Confidence 45999999875
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0053 Score=60.61 Aligned_cols=77 Identities=8% Similarity=-0.094 Sum_probs=61.4
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEE-ecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE
Q 006229 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST-LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKL 632 (655)
Q Consensus 554 H~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~t-l~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v 632 (655)
+...+.+++++++|+++++...++.|.+||. +++.... +..+...+.+++++++|.++++...++.|.+||. +++..
T Consensus 139 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~ 216 (299)
T 2z2n_A 139 KGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEIT 216 (299)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE
T ss_pred CCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEE
Confidence 4456899999999998888777889999999 6665543 3445567899999999998887777889999999 66543
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=97.52 E-value=0.0024 Score=66.07 Aligned_cols=92 Identities=13% Similarity=-0.052 Sum_probs=66.3
Q ss_pred CCeeEEEEcCCCCEEEEE-eCCCcEEEEeCC--CC-e-----EEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 006229 556 SKVESCHFSPDGKLLATG-GHDKKAVLWCTE--SF-T-----VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (655)
Q Consensus 556 ~~V~sl~fSpdG~lLaSg-s~DgtVrIWDl~--t~-~-----~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl 626 (655)
.....++|++||+.|+.+ +.++.|.+||++ ++ . .+..+.++...+..++++++|.+.++...++.|.+||.
T Consensus 179 ~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~ 258 (326)
T 2ghs_A 179 SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT 258 (326)
T ss_dssp SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred cccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC
Confidence 346789999999866554 557899999986 55 3 23344445567889999999998888777889999998
Q ss_pred CCCeEEEEEecccceeeeeceeeEEEe
Q 006229 627 ENVRKLTFICCYKCIFVSTAIGSCFFA 653 (655)
Q Consensus 627 ~tg~~v~~l~~~~~~v~s~~Vss~~F~ 653 (655)
+++.+..+..+.. .+.+++|.
T Consensus 259 -~g~~~~~i~~~~~-----~~~~~af~ 279 (326)
T 2ghs_A 259 -DGNHIARYEVPGK-----QTTCPAFI 279 (326)
T ss_dssp -TCCEEEEEECSCS-----BEEEEEEE
T ss_pred -CCCEEEEEECCCC-----CcEEEEEe
Confidence 5777776665432 24455665
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00015 Score=76.94 Aligned_cols=77 Identities=16% Similarity=0.066 Sum_probs=50.2
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCC---CEEEEEeCCCcEEEEECCCCeEEEEEec
Q 006229 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL---SRLATSSADRTVRVWDTENVRKLTFICC 637 (655)
Q Consensus 561 l~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg---~~LaSgS~DgtVrVWDl~tg~~v~~l~~ 637 (655)
+.++|++..|++++.|+.|+.||.++++.+-.+..+. .....++.+. ..++.++.|+.|+.||.++|+.+-.+..
T Consensus 124 ~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~ 201 (369)
T 2hz6_A 124 DSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY 201 (369)
T ss_dssp ---------EEEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC
T ss_pred ccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC
Confidence 4456788899999999999999999998765554221 2233334432 5677889999999999999998876654
Q ss_pred cc
Q 006229 638 YK 639 (655)
Q Consensus 638 ~~ 639 (655)
..
T Consensus 202 ~~ 203 (369)
T 2hz6_A 202 AS 203 (369)
T ss_dssp SS
T ss_pred CC
Confidence 43
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.40 E-value=1.6e-05 Score=84.52 Aligned_cols=109 Identities=10% Similarity=-0.051 Sum_probs=54.7
Q ss_pred CcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 006229 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (655)
Q Consensus 506 ~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~ 585 (655)
+..|++++.|+.|..|+..+++ .+-.+.. +.|.+..+..+++++++++.|+.|+.||..
T Consensus 9 ~~~v~~gs~dg~v~a~d~~tG~-------------------~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~ 67 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKRTGS-------------------IKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSK 67 (369)
T ss_dssp TTEEEEEETTSEEEEEETTTCC-------------------EEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC---
T ss_pred CCEEEEEcCCCEEEEEECCCCC-------------------EEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECC
Confidence 3678888899999999776662 2222222 345555566778888888999999999999
Q ss_pred CCeEEEEecccCCC-EE-EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEe
Q 006229 586 SFTVKSTLEEHTQW-IT-DVRFSPSLSRLATSSADRTVRVWDTENVRKLTFIC 636 (655)
Q Consensus 586 t~~~l~tl~gH~~~-It-sVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~ 636 (655)
+++.+..+..+... +. +.++. ++..|++++.|+.|+.||+++|+.+..+.
T Consensus 68 tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~ 119 (369)
T 2hz6_A 68 NNEGLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLS 119 (369)
T ss_dssp --CCSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC---------
T ss_pred CCceeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEec
Confidence 88876665433211 10 00111 24456666777777777777776655443
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0015 Score=66.36 Aligned_cols=68 Identities=12% Similarity=0.072 Sum_probs=55.1
Q ss_pred eecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEc-CCCCEEEEEeC
Q 006229 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS-PSLSRLATSSA 617 (655)
Q Consensus 550 ~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafs-Pdg~~LaSgS~ 617 (655)
.+..+...+..++++++|++.++...++.|.+||.++++.+..+..+...+++|+|. |+++.|+.++.
T Consensus 193 ~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 193 KLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp ECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred ECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence 333344567889999999988888888899999999999999998888889999998 88876655443
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=97.30 E-value=0.01 Score=61.28 Aligned_cols=59 Identities=17% Similarity=-0.011 Sum_probs=43.7
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecc---c-CCCEEEEEEcCCCCEEEEEe
Q 006229 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE---H-TQWITDVRFSPSLSRLATSS 616 (655)
Q Consensus 556 ~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~g---H-~~~ItsVafsPdg~~LaSgS 616 (655)
..|.+++|+++|+++++. . ..|.+||..+++....... + ...+++++++|+|+++++..
T Consensus 90 ~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~ 152 (326)
T 2ghs_A 90 FMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTM 152 (326)
T ss_dssp SCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEE
T ss_pred CcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeC
Confidence 568999999999877764 3 4499999988876433221 1 24689999999999877654
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0025 Score=69.68 Aligned_cols=91 Identities=12% Similarity=0.036 Sum_probs=69.9
Q ss_pred eeEEeecCCCCCeeEEEEcCCCCEEEEEe----------CCCcEEEEeCCCCeEEEEec-c------cCCCEEEEEEcCC
Q 006229 546 TEFQLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLE-E------HTQWITDVRFSPS 608 (655)
Q Consensus 546 ~~v~~l~gH~~~V~sl~fSpdG~lLaSgs----------~DgtVrIWDl~t~~~l~tl~-g------H~~~ItsVafsPd 608 (655)
+.+.++..-..+ .+.|+|||++|+++. .++.|.++|..+++.+.++. + +...-..++|+||
T Consensus 110 ~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spD 187 (426)
T 3c75_H 110 RILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPD 187 (426)
T ss_dssp EEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTT
T ss_pred EEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCC
Confidence 444444433334 799999999888876 46789999999999988774 2 1233457899999
Q ss_pred CCEEEEEeC--CCcEEEEECCCCeEEEEEecc
Q 006229 609 LSRLATSSA--DRTVRVWDTENVRKLTFICCY 638 (655)
Q Consensus 609 g~~LaSgS~--DgtVrVWDl~tg~~v~~l~~~ 638 (655)
|++|+.+.. +++|.|.|+.+++.+..+...
T Consensus 188 Gk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~ 219 (426)
T 3c75_H 188 NKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVP 219 (426)
T ss_dssp SSEEEEEECSSSCEEEEEETTTTEEEEEEECC
T ss_pred CCEEEEEecCCCCeEEEEECCCCeEEEEEEcC
Confidence 999999875 578999999999998888754
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0028 Score=68.24 Aligned_cols=71 Identities=8% Similarity=0.070 Sum_probs=55.1
Q ss_pred EEEcCCCCEEEEEeCCC--cEEEEeCCCCeEEEEe----cccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeE
Q 006229 561 CHFSPDGKLLATGGHDK--KAVLWCTESFTVKSTL----EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRK 631 (655)
Q Consensus 561 l~fSpdG~lLaSgs~Dg--tVrIWDl~t~~~l~tl----~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~ 631 (655)
++|++++++|+++..++ .|.+||..++.....+ ..+...+++++++|++..|+.+..++.|++||..++..
T Consensus 176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~ 252 (409)
T 3hrp_A 176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEV 252 (409)
T ss_dssp CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCE
T ss_pred eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCE
Confidence 99999999999988866 7888888766544444 22556789999999555555577788999999987764
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0014 Score=75.36 Aligned_cols=79 Identities=10% Similarity=-0.043 Sum_probs=57.1
Q ss_pred eEEEEcCCCCEEEEEeCCCc-------------EEEEeCCCCe----EEEEecc-cCCCEEEEEEcCCCCEEEEEeC---
Q 006229 559 ESCHFSPDGKLLATGGHDKK-------------AVLWCTESFT----VKSTLEE-HTQWITDVRFSPSLSRLATSSA--- 617 (655)
Q Consensus 559 ~sl~fSpdG~lLaSgs~Dgt-------------VrIWDl~t~~----~l~tl~g-H~~~ItsVafsPdg~~LaSgS~--- 617 (655)
..++|+ ||+.|+.++.|.. |++|++.+.. ++..... |...+.++.|+|||++|+..+.
T Consensus 178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~ 256 (693)
T 3iuj_A 178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANST 256 (693)
T ss_dssp CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSS
T ss_pred ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCC
Confidence 568899 9999999888854 9999997653 3434444 6667889999999998754432
Q ss_pred -CCcEEEEECCCCe-EEEEEecc
Q 006229 618 -DRTVRVWDTENVR-KLTFICCY 638 (655)
Q Consensus 618 -DgtVrVWDl~tg~-~v~~l~~~ 638 (655)
+..|++||+.++. .+..+..+
T Consensus 257 ~~~~i~~~d~~~~~~~~~~l~~~ 279 (693)
T 3iuj_A 257 SGNRLYVKDLSQENAPLLTVQGD 279 (693)
T ss_dssp SCCEEEEEETTSTTCCCEEEECS
T ss_pred CCcEEEEEECCCCCCceEEEeCC
Confidence 3479999998763 34444433
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.031 Score=55.00 Aligned_cols=77 Identities=8% Similarity=-0.009 Sum_probs=60.5
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE-EecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE
Q 006229 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKL 632 (655)
Q Consensus 554 H~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~-tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v 632 (655)
....+.+++++++|+++++...++.|..||.. ++... .+......+++++++++++++++...++.|.+||. +++..
T Consensus 102 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~ 179 (300)
T 2qc5_A 102 PDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLE 179 (300)
T ss_dssp TTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE
T ss_pred CCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEE
Confidence 34668999999999988888778899999988 65543 23445567999999999997777777889999998 55544
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00045 Score=79.43 Aligned_cols=75 Identities=23% Similarity=0.248 Sum_probs=56.8
Q ss_pred CCCCCeeEEEEcCCCCEEEE-----EeCCCcEEEEeCCCCeEEEE-ecccCCCEEEEEEcCCCCEEEEEeCCCc------
Q 006229 553 ASTSKVESCHFSPDGKLLAT-----GGHDKKAVLWCTESFTVKST-LEEHTQWITDVRFSPSLSRLATSSADRT------ 620 (655)
Q Consensus 553 gH~~~V~sl~fSpdG~lLaS-----gs~DgtVrIWDl~t~~~l~t-l~gH~~~ItsVafsPdg~~LaSgS~Dgt------ 620 (655)
+|...|..++|||||++||- |+.+.+|+|||+.+++.+.. +.+ ....+++|+ |++.|+.++.|..
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~ 202 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD--VKFSGISWL-GNEGFFYSSYDKPDGSELS 202 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE--EESCCCEEE-TTTEEEEEESSCCC-----
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC--ceeccEEEe-CCCEEEEEEecCccccccc
Confidence 35557889999999998884 33446899999999986543 221 113678999 9999999998854
Q ss_pred -------EEEEECCCCe
Q 006229 621 -------VRVWDTENVR 630 (655)
Q Consensus 621 -------VrVWDl~tg~ 630 (655)
|++|++.++.
T Consensus 203 ~~~~~~~v~~~~lgt~~ 219 (693)
T 3iuj_A 203 ARTDQHKVYFHRLGTAQ 219 (693)
T ss_dssp --CCCCEEEEEETTSCG
T ss_pred ccCCCcEEEEEECCCCc
Confidence 9999998764
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0039 Score=63.38 Aligned_cols=76 Identities=11% Similarity=0.080 Sum_probs=59.9
Q ss_pred cCCCCCeeEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 006229 552 PASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVR 630 (655)
Q Consensus 552 ~gH~~~V~sl~fSpdG~-lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~ 630 (655)
...........|+++|+ +++++..++.|..|+. +++ +..+..+...+..++|+++|+++++...++.|.+||.. ++
T Consensus 41 ~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~ 117 (305)
T 3dr2_A 41 YDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQ 117 (305)
T ss_dssp ECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred ecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CC
Confidence 33445567899999998 7778888899999998 454 34566677889999999999977766667899999986 54
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.016 Score=62.33 Aligned_cols=76 Identities=8% Similarity=-0.054 Sum_probs=53.7
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEE----ecccCCCE--EEEEEcCC-CCEEEEEeCCCcEEEEEC
Q 006229 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST----LEEHTQWI--TDVRFSPS-LSRLATSSADRTVRVWDT 626 (655)
Q Consensus 554 H~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~t----l~gH~~~I--tsVafsPd-g~~LaSgS~DgtVrVWDl 626 (655)
....+.+++|+|++..|+.+..++.|+.||..++..... ..++...- ..|+|+|+ +.++++-+.+++|++||.
T Consensus 217 ~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~ 296 (409)
T 3hrp_A 217 FSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITP 296 (409)
T ss_dssp SCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECT
T ss_pred hcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEec
Confidence 445678999999544455577788999999987764332 23333333 39999995 666777777899999998
Q ss_pred CCC
Q 006229 627 ENV 629 (655)
Q Consensus 627 ~tg 629 (655)
...
T Consensus 297 ~g~ 299 (409)
T 3hrp_A 297 DGE 299 (409)
T ss_dssp TCC
T ss_pred CCC
Confidence 743
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0031 Score=65.59 Aligned_cols=85 Identities=9% Similarity=0.039 Sum_probs=65.0
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeC-----CCcEEEEeCCCCeEEEEecc------cCCCEEEEEEcCCCC-EEEEEe---C
Q 006229 553 ASTSKVESCHFSPDGKLLATGGH-----DKKAVLWCTESFTVKSTLEE------HTQWITDVRFSPSLS-RLATSS---A 617 (655)
Q Consensus 553 gH~~~V~sl~fSpdG~lLaSgs~-----DgtVrIWDl~t~~~l~tl~g------H~~~ItsVafsPdg~-~LaSgS---~ 617 (655)
+|...+.+|+|+++|+++++-.. +..|.+||+.+++.+.++.- +...+.+|++++++. .+++-+ .
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~ 143 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD 143 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence 45567999999999987776543 68899999999987776643 234578999998654 456655 6
Q ss_pred CCcEEEEECCCCeEEEEEec
Q 006229 618 DRTVRVWDTENVRKLTFICC 637 (655)
Q Consensus 618 DgtVrVWDl~tg~~v~~l~~ 637 (655)
++.|.+||+.+++..+.+..
T Consensus 144 ~~~i~v~d~~~g~~~r~~~~ 163 (343)
T 2qe8_A 144 KAALIRVDLQTGLAARVLQG 163 (343)
T ss_dssp GCEEEEEETTTCCEEEECTT
T ss_pred CCeEEEEECCCCCEEEEecC
Confidence 88999999998887776643
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.031 Score=55.05 Aligned_cols=77 Identities=10% Similarity=-0.070 Sum_probs=60.6
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE-EecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEE
Q 006229 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKL 632 (655)
Q Consensus 554 H~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~-tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v 632 (655)
+...+.+++++++|+++++...++.|.+||.. ++... .+......+.++++++++.++++...++.|.+||.. ++..
T Consensus 60 ~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~ 137 (300)
T 2qc5_A 60 PDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY 137 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE
T ss_pred CCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE
Confidence 34568899999999988887778899999988 55432 233345679999999999988888778899999987 5544
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0051 Score=70.87 Aligned_cols=62 Identities=11% Similarity=0.052 Sum_probs=51.8
Q ss_pred CcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEeccc
Q 006229 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYK 639 (655)
Q Consensus 577 gtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~ 639 (655)
+.|+.||+.+++.+-.+. +...+....+..++.+++.++.|+.|++||+++++.+..+....
T Consensus 457 g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~ 518 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGT 518 (677)
T ss_dssp EEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred cEEEEEeCCCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCC
Confidence 789999999999887775 44445556677788899999999999999999999999887654
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0024 Score=68.40 Aligned_cols=81 Identities=7% Similarity=-0.060 Sum_probs=62.9
Q ss_pred eeEEeecCCCCCeeEEEEcCCCCEEEEEe----------CCCcEEEEeCCCCeEEEEeccc-------CCCEEEEEEcCC
Q 006229 546 TEFQLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEH-------TQWITDVRFSPS 608 (655)
Q Consensus 546 ~~v~~l~gH~~~V~sl~fSpdG~lLaSgs----------~DgtVrIWDl~t~~~l~tl~gH-------~~~ItsVafsPd 608 (655)
+.+.++..-..+ .+.|+|||++|+++. .+++|.+||+.+++.+.++.-+ ...-..++|+||
T Consensus 57 ~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpD 134 (368)
T 1mda_H 57 VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCAS 134 (368)
T ss_dssp EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTT
T ss_pred eEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCC
Confidence 455555433445 799999999888886 3789999999999999998633 123567899999
Q ss_pred CCEEEEEeC--CCcEEE--EECCC
Q 006229 609 LSRLATSSA--DRTVRV--WDTEN 628 (655)
Q Consensus 609 g~~LaSgS~--DgtVrV--WDl~t 628 (655)
|++|+.+.. +..|.| ||+.+
T Consensus 135 Gk~lyVan~~~~~~v~V~~iD~~t 158 (368)
T 1mda_H 135 SACLLFFLFGSSAAAGLSVPGASD 158 (368)
T ss_dssp SSCEEEEECSSSCEEEEEETTTEE
T ss_pred CCEEEEEccCCCCeEEEEEEchhh
Confidence 999999875 457888 99976
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0067 Score=64.58 Aligned_cols=77 Identities=6% Similarity=-0.044 Sum_probs=64.0
Q ss_pred eeEEEEcCCCCEEEEEeC----------CCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCC-EEEEEe-CCCcEEEEE
Q 006229 558 VESCHFSPDGKLLATGGH----------DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSS-ADRTVRVWD 625 (655)
Q Consensus 558 V~sl~fSpdG~lLaSgs~----------DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~-~LaSgS-~DgtVrVWD 625 (655)
...+.|++|++.|+.+.. ++.|.++|+.+++.+.++. ......++.|+|||+ +++++. .+++|.|||
T Consensus 269 ~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~-~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD 347 (373)
T 2mad_H 269 WQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYD 347 (373)
T ss_pred eEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE-CCCCcCeEEECCCCCeEEEEEcCCCCeEEEEE
Confidence 445789999998777654 3579999999999998885 334689999999999 788877 589999999
Q ss_pred CCCCeEEEEE
Q 006229 626 TENVRKLTFI 635 (655)
Q Consensus 626 l~tg~~v~~l 635 (655)
+.+++.+..+
T Consensus 348 ~~t~~vv~~i 357 (373)
T 2mad_H 348 AGAGDQDQST 357 (373)
T ss_pred CCCCCEEeee
Confidence 9999999874
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0044 Score=64.42 Aligned_cols=88 Identities=10% Similarity=0.027 Sum_probs=63.4
Q ss_pred eeEEeecCCCCCeeEEEEcCCCCEEEEEe--CCCcEEEEeCCCCeEEEEe-------cccCCCEEEEEEcCCCCEEEEEe
Q 006229 546 TEFQLIPASTSKVESCHFSPDGKLLATGG--HDKKAVLWCTESFTVKSTL-------EEHTQWITDVRFSPSLSRLATSS 616 (655)
Q Consensus 546 ~~v~~l~gH~~~V~sl~fSpdG~lLaSgs--~DgtVrIWDl~t~~~l~tl-------~gH~~~ItsVafsPdg~~LaSgS 616 (655)
+.+..+. ..+..|+++++|+++++.. .++.++||.+.+++.. .+ .+|...+.+|+|+++++++++-+
T Consensus 10 ~~v~~~~---~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~ 85 (343)
T 2qe8_A 10 EVVAELS---LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDN 85 (343)
T ss_dssp EEEEEES---SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEEC
T ss_pred EEEEEcC---CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcC
Confidence 4444443 5788999999999998864 2343666766566543 22 23567899999999988766654
Q ss_pred C-----CCcEEEEECCCCeEEEEEec
Q 006229 617 A-----DRTVRVWDTENVRKLTFICC 637 (655)
Q Consensus 617 ~-----DgtVrVWDl~tg~~v~~l~~ 637 (655)
. +..|.+||+.+++.+..+..
T Consensus 86 g~~~~~~~~i~~~d~~tg~~~~~~~~ 111 (343)
T 2qe8_A 86 GNQSKSVPKLVAWDTLNNQLSRVIYL 111 (343)
T ss_dssp HHHHTSCCEEEEEETTTTEEEEEEEC
T ss_pred CCCcCCCCeEEEEECCCCeEEEEEEC
Confidence 4 67899999999987777754
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.013 Score=67.65 Aligned_cols=63 Identities=16% Similarity=0.046 Sum_probs=51.3
Q ss_pred CCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEeccc
Q 006229 576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYK 639 (655)
Q Consensus 576 DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~ 639 (655)
+++|+.||+.+++.+-.+..+.. +....+...+.+|+.|+.|+.|+.||.++|+.+-.+....
T Consensus 454 ~g~l~A~D~~tG~~~W~~~~~~~-~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~ 516 (689)
T 1yiq_A 454 SGKLIAWDPVKQQAAWEVPYVTI-FNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAAS 516 (689)
T ss_dssp EEEEEEEETTTTEEEEEEEESSS-CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred ceeEEEEECCCCCeEeEccCCCC-ccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCC
Confidence 37799999999999887765543 3344566678899999999999999999999998887653
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0053 Score=65.70 Aligned_cols=80 Identities=4% Similarity=-0.110 Sum_probs=64.4
Q ss_pred EEEEcCCCCEEEEEeC---------CCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCC-EEEEEe-CCCcEEEEECCC
Q 006229 560 SCHFSPDGKLLATGGH---------DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSS-ADRTVRVWDTEN 628 (655)
Q Consensus 560 sl~fSpdG~lLaSgs~---------DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~-~LaSgS-~DgtVrVWDl~t 628 (655)
.+.|++|++.|+.+.. +..+.+||+.+.+.+.++.... ....|+|+|||+ .+++.. .+++|.|+|+.+
T Consensus 268 ~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t 346 (368)
T 1mda_H 268 MVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAAS 346 (368)
T ss_dssp CEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSS
T ss_pred eeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCC
Confidence 3789999998776543 2356699999999998886433 689999999997 566777 599999999999
Q ss_pred CeEEEEEecccc
Q 006229 629 VRKLTFICCYKC 640 (655)
Q Consensus 629 g~~v~~l~~~~~ 640 (655)
++.+.++..+..
T Consensus 347 ~kvv~~I~vg~~ 358 (368)
T 1mda_H 347 DQDQSSVELDKG 358 (368)
T ss_dssp CEEEEECCCCSC
T ss_pred CcEEEEEECCCC
Confidence 999998876654
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.04 Score=60.55 Aligned_cols=123 Identities=11% Similarity=0.154 Sum_probs=79.8
Q ss_pred cEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCC------CcEE
Q 006229 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD------KKAV 580 (655)
Q Consensus 507 ~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~D------gtVr 580 (655)
.+++.|..+++|.+++..... .+..+.+..+..+ +..-.+ ...-..++.+|+| +++++..+ +.|.
T Consensus 97 ~l~v~~l~s~~I~viD~~t~p-~~p~~~k~ie~~~------~~~~~g-~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~ 167 (462)
T 2ece_A 97 FLIVPGLRSSRIYIIDTKPNP-REPKIIKVIEPEE------VKKVSG-YSRLHTVHCGPDA-IYISALGNEEGEGPGGIL 167 (462)
T ss_dssp EEEEEBTTTCCEEEEECCSCT-TSCEEEEEECHHH------HHHHHC-EEEEEEEEECSSC-EEEEEEEETTSCSCCEEE
T ss_pred EEEEccCCCCeEEEEECCCCC-CCceeeeeechhh------cccccC-CCcccceeECCCe-EEEEcCCCcCCCCCCeEE
Confidence 456777788899999764321 0111111111000 000000 0012346778999 77776666 7899
Q ss_pred EEeCCCCeEEEEecc--cC-CCEEEEEEcCCCCEEEEEe-------------------CCCcEEEEECCCCeEEEEEecc
Q 006229 581 LWCTESFTVKSTLEE--HT-QWITDVRFSPSLSRLATSS-------------------ADRTVRVWDTENVRKLTFICCY 638 (655)
Q Consensus 581 IWDl~t~~~l~tl~g--H~-~~ItsVafsPdg~~LaSgS-------------------~DgtVrVWDl~tg~~v~~l~~~ 638 (655)
+.|.++++.+.++.. +. ..-+.+.|+|+++.++|+. .+.+|.+||+.+++.+.++...
T Consensus 168 vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg 247 (462)
T 2ece_A 168 MLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLG 247 (462)
T ss_dssp EECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESC
T ss_pred EEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecC
Confidence 999999999999962 22 2345688999999999985 3679999999999888887764
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0069 Score=65.34 Aligned_cols=75 Identities=15% Similarity=0.011 Sum_probs=61.7
Q ss_pred EEEcCCCCEEEEEeC-----CCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEe----------CCCcEEEEE
Q 006229 561 CHFSPDGKLLATGGH-----DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRVWD 625 (655)
Q Consensus 561 l~fSpdG~lLaSgs~-----DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS----------~DgtVrVWD 625 (655)
....|+++++++... ++.|.+.|..+++.+.++..-... .|+++|||++|+.++ .+++|.+||
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 455789998888866 679999999999999988744444 399999999887775 367899999
Q ss_pred CCCCeEEEEEec
Q 006229 626 TENVRKLTFICC 637 (655)
Q Consensus 626 l~tg~~v~~l~~ 637 (655)
+.+++.+.++..
T Consensus 116 ~~t~~v~~~I~v 127 (386)
T 3sjl_D 116 PVTLLPTADIEL 127 (386)
T ss_dssp TTTCCEEEEEEE
T ss_pred CCCCeEEEEEEC
Confidence 999999888754
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.014 Score=63.77 Aligned_cols=75 Identities=13% Similarity=0.116 Sum_probs=63.0
Q ss_pred EEEEcCCCCEEEEEeC----------CCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCC-EEEEEe-CCCcEEEEECC
Q 006229 560 SCHFSPDGKLLATGGH----------DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSS-ADRTVRVWDTE 627 (655)
Q Consensus 560 sl~fSpdG~lLaSgs~----------DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~-~LaSgS-~DgtVrVWDl~ 627 (655)
.++|++|++.|++... +++|.+.|+.+.+.+.++..- .....|.|+||++ +++++. .+++|.|+|+.
T Consensus 323 ~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~ 401 (426)
T 3c75_H 323 QTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAA 401 (426)
T ss_dssp CEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETT
T ss_pred eeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECC
Confidence 4689999887776642 357999999999999988622 2588999999999 888888 59999999999
Q ss_pred CCeEEEEE
Q 006229 628 NVRKLTFI 635 (655)
Q Consensus 628 tg~~v~~l 635 (655)
+++.+.++
T Consensus 402 t~kvv~tI 409 (426)
T 3c75_H 402 TGEELRSV 409 (426)
T ss_dssp TCCEEEEE
T ss_pred CCCEEEEe
Confidence 99999887
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=95.85 E-value=0.1 Score=56.97 Aligned_cols=97 Identities=19% Similarity=0.092 Sum_probs=64.6
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCe------------EEEEec-c-----cCCCEEEEEEcC---CCCEEEEE
Q 006229 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFT------------VKSTLE-E-----HTQWITDVRFSP---SLSRLATS 615 (655)
Q Consensus 557 ~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~------------~l~tl~-g-----H~~~ItsVafsP---dg~~LaSg 615 (655)
.|..+..||+|++||..+ +..|.|-.+..+. ..+++. + ....|..|.|+| .+..|++-
T Consensus 67 ~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 577899999999999986 4688888876221 112332 1 256799999999 45689999
Q ss_pred eCCCcEEEEECCCC-eEEEEEecccceee----eeceeeEEEec
Q 006229 616 SADRTVRVWDTENV-RKLTFICCYKCIFV----STAIGSCFFAP 654 (655)
Q Consensus 616 S~DgtVrVWDl~tg-~~v~~l~~~~~~v~----s~~Vss~~F~P 654 (655)
..|++||+||+... +....+......+. ...|.+++|.+
T Consensus 146 tsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~ 189 (452)
T 3pbp_A 146 KEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSK 189 (452)
T ss_dssp ETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECT
T ss_pred ecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcC
Confidence 99999999999852 11113432222111 14566777764
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.091 Score=53.68 Aligned_cols=94 Identities=9% Similarity=0.022 Sum_probs=66.5
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccc-----CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEE
Q 006229 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH-----TQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFI 635 (655)
Q Consensus 561 l~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH-----~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l 635 (655)
..+++||+.|+++..+++|.++|..+.+.+.++.-- -..++.+.|. ++...+....++.|.+-|..+++.+..+
T Consensus 110 ~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I 188 (266)
T 2iwa_A 110 WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWI 188 (266)
T ss_dssp CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEE
Confidence 345668887777777899999999999888877521 1246788888 6755555556889999999999999988
Q ss_pred ecccce--------eeeeceeeEEEecC
Q 006229 636 CCYKCI--------FVSTAIGSCFFAPT 655 (655)
Q Consensus 636 ~~~~~~--------v~s~~Vss~~F~P~ 655 (655)
...... -.....+.++|+|+
T Consensus 189 ~~~g~~~~~~~~~~~~~~v~nGIa~~~~ 216 (266)
T 2iwa_A 189 LLPNLRKKLIDEGFRDIDVLNGIAWDQE 216 (266)
T ss_dssp ECHHHHHHHHHTTCTTCCCEEEEEEETT
T ss_pred ECCCcccccccccccccCceEEEEEcCC
Confidence 754210 01123467778774
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=95.71 E-value=0.095 Score=53.50 Aligned_cols=91 Identities=10% Similarity=0.028 Sum_probs=64.8
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccc----C-CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecc
Q 006229 564 SPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH----T-QWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCY 638 (655)
Q Consensus 564 SpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH----~-~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~ 638 (655)
++|++.|+.+..+.+|.++|..+++.+.++.-. . ..++.+.|. +|+..+..-.+..|.+-|..+++.+..+...
T Consensus 133 t~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~ 211 (262)
T 3nol_A 133 THNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLN 211 (262)
T ss_dssp EECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECT
T ss_pred ecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECC
Confidence 356776666666788999999999988887532 1 345667776 6765555556889999999999999998764
Q ss_pred ccee-------eeeceeeEEEecC
Q 006229 639 KCIF-------VSTAIGSCFFAPT 655 (655)
Q Consensus 639 ~~~v-------~s~~Vss~~F~P~ 655 (655)
...- .....+.++|+|+
T Consensus 212 ~L~~~~~~~~~~~~vlNGIA~dp~ 235 (262)
T 3nol_A 212 GILAEAGPLPSPIDVLNGIAWDKE 235 (262)
T ss_dssp TGGGGSCSCCSSCCCEEEEEEETT
T ss_pred cCccccccccCcCCceEEEEEcCC
Confidence 3211 1124578999884
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.14 Score=52.32 Aligned_cols=106 Identities=8% Similarity=-0.040 Sum_probs=72.1
Q ss_pred eeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecc--cC---CCEEEEEEcCCCCEEEEEeCCCc
Q 006229 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE--HT---QWITDVRFSPSLSRLATSSADRT 620 (655)
Q Consensus 546 ~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~g--H~---~~ItsVafsPdg~~LaSgS~Dgt 620 (655)
+.++++..-... ..|+ +|++.|+.+..+.+|.++|..+++.+.++.- +. ..++.+.|. +|+..+..-.+..
T Consensus 127 ~~~~ti~~~~eG-wGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~ 202 (268)
T 3nok_A 127 QRERTTRYSGEG-WGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSD 202 (268)
T ss_dssp EEEEEEECSSCC-CCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSE
T ss_pred cEEEEEeCCCce-eEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCe
Confidence 455555432222 2333 5688777777799999999999998888753 22 245677877 6765555556789
Q ss_pred EEEEECCCCeEEEEEecccce--------eeeeceeeEEEecC
Q 006229 621 VRVWDTENVRKLTFICCYKCI--------FVSTAIGSCFFAPT 655 (655)
Q Consensus 621 VrVWDl~tg~~v~~l~~~~~~--------v~s~~Vss~~F~P~ 655 (655)
|.+-|.++++.+.++...... -.....+.++|+|+
T Consensus 203 I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~ 245 (268)
T 3nok_A 203 VLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPG 245 (268)
T ss_dssp EEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTT
T ss_pred EEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCC
Confidence 999999999999998765321 01124578898874
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.27 Score=50.15 Aligned_cols=75 Identities=5% Similarity=-0.064 Sum_probs=53.5
Q ss_pred EEEEcCCCCEE-EEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecc
Q 006229 560 SCHFSPDGKLL-ATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCY 638 (655)
Q Consensus 560 sl~fSpdG~lL-aSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~ 638 (655)
.++++ +..| ++.-.++.|.++|..+++.+.++..-...= ..+++||.+|+.+..+++|.++|..+.+.+..+...
T Consensus 70 Gi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~g--~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg 145 (266)
T 2iwa_A 70 GLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKDG--WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVK 145 (266)
T ss_dssp EEEEE--TTEEEEEETTCSEEEEEETTTTEEEEEEECCSSSC--CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECE
T ss_pred EEEEe--CCEEEEEEecCCEEEEEECCCCcEEEEEECCCCCe--EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEEC
Confidence 45554 4444 444567899999999999999885221221 235567877777777889999999998888877654
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=95.43 E-value=0.16 Score=52.02 Aligned_cols=110 Identities=6% Similarity=-0.064 Sum_probs=70.7
Q ss_pred cEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 006229 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (655)
Q Consensus 507 ~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t 586 (655)
.+..+.+.++.|+.++..+++. ...+ +... ..-..+++.. +++.+..-.++.+.+||..+
T Consensus 66 ~Ly~stG~~g~v~~iD~~Tgkv----------------~~~~--l~~~-~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~T 125 (268)
T 3nok_A 66 HFFESTGHQGTLRQLSLESAQP----------------VWME--RLGN-IFAEGLASDG-ERLYQLTWTEGLLFTWSGMP 125 (268)
T ss_dssp EEEEEETTTTEEEECCSSCSSC----------------SEEE--ECTT-CCEEEEEECS-SCEEEEESSSCEEEEEETTT
T ss_pred EEEEEcCCCCEEEEEECCCCcE----------------EeEE--CCCC-cceeEEEEeC-CEEEEEEccCCEEEEEECCc
Confidence 4555666777788776555421 1122 2211 1112244432 34555556789999999999
Q ss_pred CeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEeccc
Q 006229 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYK 639 (655)
Q Consensus 587 ~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~ 639 (655)
++.+.++.. ...=+.|+ +++..|+.+..+++|.++|..+.+.+..+....
T Consensus 126 l~~~~ti~~-~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~ 175 (268)
T 3nok_A 126 PQRERTTRY-SGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKL 175 (268)
T ss_dssp TEEEEEEEC-SSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEE
T ss_pred CcEEEEEeC-CCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCC
Confidence 999999973 22224444 567888777778899999999999888876643
|
| >3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A | Back alignment and structure |
|---|
Probab=95.40 E-value=0.018 Score=62.45 Aligned_cols=14 Identities=14% Similarity=0.418 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHhhh
Q 006229 52 LFEWWSVFWDIFIA 65 (655)
Q Consensus 52 L~EWw~~FWd~f~a 65 (655)
..+.|.++.+.+..
T Consensus 336 ~~~~~~~~~~~~~~ 349 (449)
T 3iot_A 336 MSAFWYAVRTAVIN 349 (449)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45666666666554
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.35 Score=48.70 Aligned_cols=106 Identities=8% Similarity=0.014 Sum_probs=70.8
Q ss_pred eeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccC-----CCEEEEEEcCCCCEEEEEeCCCc
Q 006229 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT-----QWITDVRFSPSLSRLATSSADRT 620 (655)
Q Consensus 546 ~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~-----~~ItsVafsPdg~~LaSgS~Dgt 620 (655)
+.+.++..-... ..|+ +|+..|+.+..+.+|.++|..+.+.+.++.-.. ..++-+.|. +|+..+..-.+..
T Consensus 96 ~~~~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~ 171 (243)
T 3mbr_X 96 TPRARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSR 171 (243)
T ss_dssp EEEEEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTE
T ss_pred cEEEEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCe
Confidence 555555533333 2333 467766666668999999999999888875322 345667765 6665555546779
Q ss_pred EEEEECCCCeEEEEEecccce--------eeeeceeeEEEecC
Q 006229 621 VRVWDTENVRKLTFICCYKCI--------FVSTAIGSCFFAPT 655 (655)
Q Consensus 621 VrVWDl~tg~~v~~l~~~~~~--------v~s~~Vss~~F~P~ 655 (655)
|.+-|.++++.+..+...... -.....+.++|+|+
T Consensus 172 I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~ 214 (243)
T 3mbr_X 172 IARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAE 214 (243)
T ss_dssp EEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETT
T ss_pred EEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCC
Confidence 999999999999998755321 01224578999874
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=95.22 E-value=0.23 Score=49.64 Aligned_cols=76 Identities=12% Similarity=-0.016 Sum_probs=48.9
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 006229 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTF 634 (655)
Q Consensus 555 ~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~ 634 (655)
...+.++.+.+++.+++.. +.|..|| .+++.+..+......|.++.++++|. |..++.++.|..+|. ++..+..
T Consensus 176 ~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~ 249 (330)
T 3hxj_A 176 DAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWR 249 (330)
T ss_dssp SCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEE
T ss_pred CCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEE
Confidence 3456677777777754443 7788888 67776666665566778888877764 444556677777774 4544444
Q ss_pred Ee
Q 006229 635 IC 636 (655)
Q Consensus 635 l~ 636 (655)
+.
T Consensus 250 ~~ 251 (330)
T 3hxj_A 250 FK 251 (330)
T ss_dssp EE
T ss_pred ee
Confidence 43
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=95.19 E-value=0.36 Score=49.93 Aligned_cols=71 Identities=8% Similarity=-0.032 Sum_probs=52.6
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecc
Q 006229 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCY 638 (655)
Q Consensus 566 dG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~ 638 (655)
++..|+.++.|+.|..+|.++++.+-.+...........+. +..|+.++.|+.|..+|.++|+.+-.+...
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~ 172 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLD 172 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCC
Confidence 45677888899999999999999876665443322222232 458888899999999999999887666543
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=95.17 E-value=0.12 Score=58.13 Aligned_cols=63 Identities=10% Similarity=-0.137 Sum_probs=47.5
Q ss_pred CCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEeccc
Q 006229 576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYK 639 (655)
Q Consensus 576 DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~ 639 (655)
++.|..||+.+++.+-++... ..+.+..+...+.+++.++.|+.|++||.++|+.+..+....
T Consensus 443 ~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~ 505 (571)
T 2ad6_A 443 MGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPS 505 (571)
T ss_dssp CEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred CCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCC
Confidence 578999999999987766522 233333333456788889999999999999999998887554
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=95.09 E-value=0.15 Score=51.10 Aligned_cols=77 Identities=12% Similarity=0.008 Sum_probs=57.0
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE
Q 006229 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLT 633 (655)
Q Consensus 554 H~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~ 633 (655)
+...+.++.+.+++. |+.++.++.|..||.. ++.+..+......+.++.+.+++..++.. +.|..|| .+++.+.
T Consensus 135 ~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~ 208 (330)
T 3hxj_A 135 KKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKW 208 (330)
T ss_dssp SSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEE
T ss_pred CCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEE
Confidence 344566777777787 5557788999999998 88777776666778888888888765544 7889999 6776665
Q ss_pred EEe
Q 006229 634 FIC 636 (655)
Q Consensus 634 ~l~ 636 (655)
.+.
T Consensus 209 ~~~ 211 (330)
T 3hxj_A 209 NFY 211 (330)
T ss_dssp EEC
T ss_pred EEc
Confidence 544
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=95.06 E-value=0.55 Score=48.47 Aligned_cols=70 Identities=10% Similarity=0.055 Sum_probs=53.4
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEecc-cCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEec
Q 006229 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICC 637 (655)
Q Consensus 566 dG~lLaSgs~DgtVrIWDl~t~~~l~tl~g-H~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~ 637 (655)
++..|+.++.++.|..+|..+++.+-.... ....+....+ .+..|+.++.+|.|.+||.++++.+..+..
T Consensus 276 ~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~ 346 (376)
T 3q7m_A 276 DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKV 346 (376)
T ss_dssp ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEec
Confidence 366788888899999999999998766652 2223333333 267899999999999999999998877665
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=94.78 E-value=2.3 Score=41.65 Aligned_cols=73 Identities=7% Similarity=0.018 Sum_probs=48.6
Q ss_pred CCeeEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeC---CCcEEEEECCC
Q 006229 556 SKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTEN 628 (655)
Q Consensus 556 ~~V~sl~fSpdG~-lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~---DgtVrVWDl~t 628 (655)
.....+++++++. ++++-...+.|.++|++.......+.........++++|++.+|+.+.. .+.|.+++++.
T Consensus 79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg 155 (267)
T 1npe_A 79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG 155 (267)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS
T ss_pred CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC
Confidence 4578999999755 4445556688999998754332223222246789999997666555543 36888888864
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=94.78 E-value=0.032 Score=64.84 Aligned_cols=71 Identities=11% Similarity=0.064 Sum_probs=51.0
Q ss_pred CeeEEEEc-CCCCEEEEEeC-C----CcEEEEeCCCC-eEEE-EecccCCCEEEEEEcCCCCEEEEEeCC-----CcEEE
Q 006229 557 KVESCHFS-PDGKLLATGGH-D----KKAVLWCTESF-TVKS-TLEEHTQWITDVRFSPSLSRLATSSAD-----RTVRV 623 (655)
Q Consensus 557 ~V~sl~fS-pdG~lLaSgs~-D----gtVrIWDl~t~-~~l~-tl~gH~~~ItsVafsPdg~~LaSgS~D-----gtVrV 623 (655)
.+....|| |||++||-+.. + .+|+++|+.++ +.+. .+. ....+++|+|||+.|+..+.| ..|.+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 57889999 99998775433 2 35999999998 6321 111 124578999999988877765 25888
Q ss_pred EECCCCe
Q 006229 624 WDTENVR 630 (655)
Q Consensus 624 WDl~tg~ 630 (655)
|++.++.
T Consensus 252 ~~lgt~~ 258 (751)
T 2xe4_A 252 HVMGKLQ 258 (751)
T ss_dssp EETTSCG
T ss_pred EECCCCc
Confidence 8988764
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=94.77 E-value=0.15 Score=58.31 Aligned_cols=63 Identities=8% Similarity=0.007 Sum_probs=49.5
Q ss_pred CCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEeccc
Q 006229 576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYK 639 (655)
Q Consensus 576 DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~ 639 (655)
++.|+.||+.+++.+-.+..+. .+....+...+.+|+.++.|+.|++||.++++.+..+....
T Consensus 437 ~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~ 499 (668)
T 1kv9_A 437 SGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQS 499 (668)
T ss_dssp EEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred cceEEEEeCCCCcEEEEccCCC-CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCC
Confidence 4789999999999886665333 33334445568899999999999999999999998886653
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=94.61 E-value=0.17 Score=58.62 Aligned_cols=71 Identities=14% Similarity=0.080 Sum_probs=50.6
Q ss_pred eEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCeE--EEEec-ccCCCEEEEEEcCCCCEEEEEeC---CCcEEEEECC
Q 006229 559 ESCHFSPDGKLLATGGHD-----KKAVLWCTESFTV--KSTLE-EHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTE 627 (655)
Q Consensus 559 ~sl~fSpdG~lLaSgs~D-----gtVrIWDl~t~~~--l~tl~-gH~~~ItsVafsPdg~~LaSgS~---DgtVrVWDl~ 627 (655)
..+.|+|||+.|+....| ..|.+|++.++.. ...+. .+.....++.|+|||++|+..+. ...|.++|+.
T Consensus 224 ~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~ 303 (751)
T 2xe4_A 224 GEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLR 303 (751)
T ss_dssp SCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESS
T ss_pred eeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECC
Confidence 468899999987777765 2588888877632 22333 23456778999999998876663 3358889998
Q ss_pred CC
Q 006229 628 NV 629 (655)
Q Consensus 628 tg 629 (655)
++
T Consensus 304 ~~ 305 (751)
T 2xe4_A 304 KG 305 (751)
T ss_dssp SC
T ss_pred CC
Confidence 75
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=94.58 E-value=0.8 Score=46.06 Aligned_cols=69 Identities=12% Similarity=0.112 Sum_probs=51.3
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecc
Q 006229 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCY 638 (655)
Q Consensus 567 G~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~ 638 (655)
+++.+..-.++.+.+||..+++.+.++..-. .=+.|+ +++..|+.+..+++|.++|..+.+.+..+...
T Consensus 75 ~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~ 143 (243)
T 3mbr_X 75 DRLIQLTWRNHEGFVYDLATLTPRARFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVT 143 (243)
T ss_dssp TEEEEEESSSSEEEEEETTTTEEEEEEECSS-CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECE
T ss_pred CEEEEEEeeCCEEEEEECCcCcEEEEEeCCC-CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEc
Confidence 4455555678999999999999999997332 224444 45666666666889999999999888887664
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=94.42 E-value=0.63 Score=53.47 Aligned_cols=78 Identities=14% Similarity=0.049 Sum_probs=58.7
Q ss_pred eEEEEcCCCCEEEEEeCCCc-------------------EEEEeCCCCeEEEEecc--cC-------CCEEEEEEcCCCC
Q 006229 559 ESCHFSPDGKLLATGGHDKK-------------------AVLWCTESFTVKSTLEE--HT-------QWITDVRFSPSLS 610 (655)
Q Consensus 559 ~sl~fSpdG~lLaSgs~Dgt-------------------VrIWDl~t~~~l~tl~g--H~-------~~ItsVafsPdg~ 610 (655)
..+.+++++.+|+.+..++. |..||.++|+.+-.+.. |. ..+....+..+|+
T Consensus 238 ~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~ 317 (689)
T 1yiq_A 238 DSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGK 317 (689)
T ss_dssp SCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred cceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCc
Confidence 46889998889999888764 99999999999877753 32 1222223333565
Q ss_pred ---EEEEEeCCCcEEEEECCCCeEEEEEe
Q 006229 611 ---RLATSSADRTVRVWDTENVRKLTFIC 636 (655)
Q Consensus 611 ---~LaSgS~DgtVrVWDl~tg~~v~~l~ 636 (655)
.|+.++.||.|+++|.++|+.+....
T Consensus 318 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~ 346 (689)
T 1yiq_A 318 PRKVLMQAPKNGFFYVIDRATGELLSAKG 346 (689)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred EEEEEEEECCCCeEEEEECCCCCEecccc
Confidence 79999999999999999999885443
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=94.42 E-value=0.59 Score=49.25 Aligned_cols=98 Identities=6% Similarity=-0.071 Sum_probs=64.2
Q ss_pred eeEEEE---cCCCCEEEEEe-------------CCCcEEEEeCC---CCeEEEEec--ccC-----------CCEEEEEE
Q 006229 558 VESCHF---SPDGKLLATGG-------------HDKKAVLWCTE---SFTVKSTLE--EHT-----------QWITDVRF 605 (655)
Q Consensus 558 V~sl~f---SpdG~lLaSgs-------------~DgtVrIWDl~---t~~~l~tl~--gH~-----------~~ItsVaf 605 (655)
+..|.| .++++++++.. .+..|..+|+. +++.+.... +.. ..+.+++.
T Consensus 65 ~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvav 144 (334)
T 2p9w_A 65 MSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQ 144 (334)
T ss_dssp EEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEE
T ss_pred eeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEE
Confidence 578999 68888887643 26789999999 777654443 222 24899999
Q ss_pred cCCCCEEEEEeCC-CcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 606 SPSLSRLATSSAD-RTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 606 sPdg~~LaSgS~D-gtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
.++|+..++++.- +.|...|.........+..........-.+.++|+|+
T Consensus 145 D~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pd 195 (334)
T 2p9w_A 145 DRDGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPH 195 (334)
T ss_dssp CTTSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETT
T ss_pred CCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCC
Confidence 9999999999988 8877777664322222222111112233557777774
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=94.34 E-value=0.44 Score=48.56 Aligned_cols=91 Identities=13% Similarity=0.127 Sum_probs=65.2
Q ss_pred eeeEEeecCCCC--CeeEEEEcCCCCEEEEEeCCC--cEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEe-CCC
Q 006229 545 FTEFQLIPASTS--KVESCHFSPDGKLLATGGHDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADR 619 (655)
Q Consensus 545 ~~~v~~l~gH~~--~V~sl~fSpdG~lLaSgs~Dg--tVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS-~Dg 619 (655)
++.++++. |.. -.-.|.|+ ++.++.+++.++ .|+++|+++++.+..+.-. ..+....+.+++..|+.+. .++
T Consensus 31 ~~vv~~~p-hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~ 107 (262)
T 3nol_A 31 YQIVHSYP-HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG-KRYFGEGISDWKDKIVGLTWKNG 107 (262)
T ss_dssp EEEEEEEE-CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC-TTCCEEEEEEETTEEEEEESSSS
T ss_pred eEEEEEec-CCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecC-CccceeEEEEeCCEEEEEEeeCC
Confidence 45556663 432 24688898 788888888876 8999999999998887532 3333333334466666665 488
Q ss_pred cEEEEECCCCeEEEEEecc
Q 006229 620 TVRVWDTENVRKLTFICCY 638 (655)
Q Consensus 620 tVrVWDl~tg~~v~~l~~~ 638 (655)
.+.+||..+++.+.+|...
T Consensus 108 ~v~v~D~~t~~~~~ti~~~ 126 (262)
T 3nol_A 108 LGFVWNIRNLRQVRSFNYD 126 (262)
T ss_dssp EEEEEETTTCCEEEEEECS
T ss_pred EEEEEECccCcEEEEEECC
Confidence 9999999999999888753
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=94.16 E-value=0.24 Score=55.87 Aligned_cols=64 Identities=13% Similarity=-0.070 Sum_probs=47.1
Q ss_pred CCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccc
Q 006229 576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKC 640 (655)
Q Consensus 576 DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~ 640 (655)
++.|..||+.+++.+-....+. .+..-.+...+.+++.++.|+.|+.||.++|+.+-.+.....
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g 528 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSG 528 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred cceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCC
Confidence 6889999999998876655332 222212223477888899999999999999999988876543
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=94.00 E-value=0.78 Score=52.55 Aligned_cols=80 Identities=13% Similarity=0.015 Sum_probs=60.6
Q ss_pred eeEEEEcCCCCEEEEEeCCC-------------------cEEEEeCCCCeEEEEecc--cC-------CCEEEEEEcCCC
Q 006229 558 VESCHFSPDGKLLATGGHDK-------------------KAVLWCTESFTVKSTLEE--HT-------QWITDVRFSPSL 609 (655)
Q Consensus 558 V~sl~fSpdG~lLaSgs~Dg-------------------tVrIWDl~t~~~l~tl~g--H~-------~~ItsVafsPdg 609 (655)
...+.+++++.+|+.+..++ .|..+|.++|+.+-.+.. |. .....+....+|
T Consensus 245 w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG 324 (677)
T 1kb0_A 245 WDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAG 324 (677)
T ss_dssp CSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETT
T ss_pred ccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCC
Confidence 45788999988888887664 599999999998877653 32 112223334477
Q ss_pred ---CEEEEEeCCCcEEEEECCCCeEEEEEec
Q 006229 610 ---SRLATSSADRTVRVWDTENVRKLTFICC 637 (655)
Q Consensus 610 ---~~LaSgS~DgtVrVWDl~tg~~v~~l~~ 637 (655)
..|+.++.+|.|+++|.++|+.+..+..
T Consensus 325 ~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~ 355 (677)
T 1kb0_A 325 KPRKVILHAPKNGFFFVLDRTNGKFISAKNF 355 (677)
T ss_dssp EEEEEEEECCTTSEEEEEETTTCCEEEEEES
T ss_pred cEeeEEEEECCCCEEEEEECCCCCEeccccc
Confidence 6899999999999999999999877653
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=93.85 E-value=0.75 Score=50.53 Aligned_cols=72 Identities=10% Similarity=0.117 Sum_probs=54.8
Q ss_pred eeEEEEcCCCCEEEEEe-------------------CCCcEEEEeCCCCeEEEEeccc-C-CCEEEEEE--cCCCCEEEE
Q 006229 558 VESCHFSPDGKLLATGG-------------------HDKKAVLWCTESFTVKSTLEEH-T-QWITDVRF--SPSLSRLAT 614 (655)
Q Consensus 558 V~sl~fSpdG~lLaSgs-------------------~DgtVrIWDl~t~~~l~tl~gH-~-~~ItsVaf--sPdg~~LaS 614 (655)
-..+-|+|+++++++.. .+.+|.+||+.+++.+.++.-- . .....|+| +|++++++.
T Consensus 190 ~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV 269 (462)
T 2ece_A 190 AYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFI 269 (462)
T ss_dssp CCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEE
T ss_pred cceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEE
Confidence 34688899999998885 3789999999999888887632 1 34456666 999999887
Q ss_pred Ee------CCCcEEEEECCCC
Q 006229 615 SS------ADRTVRVWDTENV 629 (655)
Q Consensus 615 gS------~DgtVrVWDl~tg 629 (655)
++ .+++|.+|..+.+
T Consensus 270 ~~e~~~~~Lss~V~v~~~d~g 290 (462)
T 2ece_A 270 NMVVSLKDLSSSIWLWFYEDG 290 (462)
T ss_dssp EEEEETTTCCEEEEEEEEETT
T ss_pred EEeeeccCCCceEEEEEecCC
Confidence 77 4668888776654
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=93.37 E-value=1.3 Score=44.79 Aligned_cols=85 Identities=13% Similarity=0.078 Sum_probs=59.5
Q ss_pred eeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCC-C-cEE
Q 006229 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-R-TVR 622 (655)
Q Consensus 545 ~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~D-g-tVr 622 (655)
.+.+..+... .....++|+++|+++++-..++.|..||.++. ....+. ....+..|+|+++|+++++.... + .|.
T Consensus 22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~ 98 (306)
T 2p4o_A 22 AKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVV 98 (306)
T ss_dssp EEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred ceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEE
Confidence 4455556443 45778999999998888778899999998764 333332 33568999999999976665443 2 466
Q ss_pred EEECCCCeEE
Q 006229 623 VWDTENVRKL 632 (655)
Q Consensus 623 VWDl~tg~~v 632 (655)
.+|..+++..
T Consensus 99 ~~d~~~g~~~ 108 (306)
T 2p4o_A 99 SLVKSDGTVE 108 (306)
T ss_dssp EEECTTSCEE
T ss_pred EEcCCCCeEE
Confidence 6777777654
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=93.10 E-value=0.082 Score=59.93 Aligned_cols=81 Identities=19% Similarity=0.144 Sum_probs=59.0
Q ss_pred eeEEEEcCCCCEEEEEe-CCCcEEEEeCCCCe------------EEEEecccCCCEEEEEEcCCCCEEEE-EeCCCcEEE
Q 006229 558 VESCHFSPDGKLLATGG-HDKKAVLWCTESFT------------VKSTLEEHTQWITDVRFSPSLSRLAT-SSADRTVRV 623 (655)
Q Consensus 558 V~sl~fSpdG~lLaSgs-~DgtVrIWDl~t~~------------~l~tl~gH~~~ItsVafsPdg~~LaS-gS~DgtVrV 623 (655)
..+|.|+|||+++++++ .+.+|.++|+.+.+ .+..+. -...-..++|+|+| ++++ .-.|+.|-+
T Consensus 279 PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~dG-~aY~t~~ldsqV~k 356 (595)
T 1fwx_A 279 PHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDGRG-NAYTSLFLDSQVVK 356 (595)
T ss_dssp CCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECTTS-EEEEEETTTTEEEE
T ss_pred ceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECCCC-eEEEEEecCCcEEE
Confidence 45899999999766665 67899999998653 333332 23457889999999 5554 456999999
Q ss_pred EECCC----------CeEEEEEecccc
Q 006229 624 WDTEN----------VRKLTFICCYKC 640 (655)
Q Consensus 624 WDl~t----------g~~v~~l~~~~~ 640 (655)
||+.+ ...+..+..+..
T Consensus 357 wdi~~a~~~~~g~~~~~vi~kidV~yq 383 (595)
T 1fwx_A 357 WNIEDAIRAYAGEKVDPIKDKLDVHYQ 383 (595)
T ss_dssp EEHHHHHHHHHTCSCCCEEEEEECSSC
T ss_pred EEhhHhhhhhcccccceeEEEeecccc
Confidence 99987 556666666533
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=92.92 E-value=3 Score=42.05 Aligned_cols=74 Identities=9% Similarity=0.057 Sum_probs=49.3
Q ss_pred CeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeEEEEec----c-cCCCEEEEEEcC-CCCEEEEEeC------------
Q 006229 557 KVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLE----E-HTQWITDVRFSP-SLSRLATSSA------------ 617 (655)
Q Consensus 557 ~V~sl~fSp-dG~lLaSgs~DgtVrIWDl~t~~~l~tl~----g-H~~~ItsVafsP-dg~~LaSgS~------------ 617 (655)
.+..+++++ +|++ +.+...+.|.++|..++... .+. + .....+.|++.+ +|++.++-..
T Consensus 81 ~p~gi~~~~~~g~l-~v~d~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~ 158 (322)
T 2fp8_A 81 RTYDISYNLQNNQL-YIVDCYYHLSVVGSEGGHAT-QLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIM 158 (322)
T ss_dssp CEEEEEEETTTTEE-EEEETTTEEEEECTTCEECE-EEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHH
T ss_pred CCceEEEcCCCCcE-EEEECCCCEEEEeCCCCEEE-EecccCCCCcccccceEEEecCCCEEEEECCcccccccccceeh
Confidence 467899998 6654 44444555888898765432 221 1 123578999999 9987776543
Q ss_pred -----CCcEEEEECCCCeEE
Q 006229 618 -----DRTVRVWDTENVRKL 632 (655)
Q Consensus 618 -----DgtVrVWDl~tg~~v 632 (655)
++.|.+||..+++..
T Consensus 159 ~~~~~~g~v~~~d~~~~~~~ 178 (322)
T 2fp8_A 159 DTSDKTGRLIKYDPSTKETT 178 (322)
T ss_dssp HHTCCCEEEEEEETTTTEEE
T ss_pred cccCCCceEEEEeCCCCEEE
Confidence 367899998777543
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=92.84 E-value=7.5 Score=37.82 Aligned_cols=74 Identities=9% Similarity=0.026 Sum_probs=49.2
Q ss_pred CCeeEEEEcCCCCEEEEEeC---CCcEEEEeCCCCeEEEEe-cccCCCEEEEEEcCCCCEEEE-EeCCCcEEEEECCCCe
Q 006229 556 SKVESCHFSPDGKLLATGGH---DKKAVLWCTESFTVKSTL-EEHTQWITDVRFSPSLSRLAT-SSADRTVRVWDTENVR 630 (655)
Q Consensus 556 ~~V~sl~fSpdG~lLaSgs~---DgtVrIWDl~t~~~l~tl-~gH~~~ItsVafsPdg~~LaS-gS~DgtVrVWDl~tg~ 630 (655)
.....++++|++..|+.+.. .+.|.+++++... ...+ ...-...+.++|++++.+|+. -...++|.++|+....
T Consensus 122 ~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~ 200 (267)
T 1npe_A 122 VNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG 200 (267)
T ss_dssp SSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEE
T ss_pred CCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCc
Confidence 34678999996665555443 3678888876432 2222 233346789999998766554 4456789999997543
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=92.00 E-value=1.2 Score=50.49 Aligned_cols=64 Identities=8% Similarity=-0.144 Sum_probs=45.8
Q ss_pred CCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEeccc
Q 006229 575 HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYK 639 (655)
Q Consensus 575 ~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~ 639 (655)
.++.|..||+.+++.+-.... ...+..-.+...+.+|+.++.|+.|+.||.++|+.+-.+....
T Consensus 451 ~~G~l~A~D~~tG~~~W~~~~-~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~ 514 (599)
T 1w6s_A 451 GLGQIKAYNAITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPS 514 (599)
T ss_dssp CCEEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred CcCeEEEEECCCCCEEeEecC-CCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCC
Confidence 347899999999987765541 1122211122357788889999999999999999998886543
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=91.98 E-value=2.7 Score=47.97 Aligned_cols=79 Identities=15% Similarity=0.082 Sum_probs=59.1
Q ss_pred eeEEEEcCCCCEEEEEeCCCc-------------------EEEEeCCCCeEEEEecc--cC-------CCEEEEEEcCCC
Q 006229 558 VESCHFSPDGKLLATGGHDKK-------------------AVLWCTESFTVKSTLEE--HT-------QWITDVRFSPSL 609 (655)
Q Consensus 558 V~sl~fSpdG~lLaSgs~Dgt-------------------VrIWDl~t~~~l~tl~g--H~-------~~ItsVafsPdg 609 (655)
..+++++++..+++.+..++. |..+|.++|+.+-.+.. |. ..+....+..+|
T Consensus 232 w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G 311 (668)
T 1kv9_A 232 WDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDG 311 (668)
T ss_dssp CSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETT
T ss_pred ccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCC
Confidence 456789998888888887763 99999999998877653 32 222223333466
Q ss_pred C---EEEEEeCCCcEEEEECCCCeEEEEEe
Q 006229 610 S---RLATSSADRTVRVWDTENVRKLTFIC 636 (655)
Q Consensus 610 ~---~LaSgS~DgtVrVWDl~tg~~v~~l~ 636 (655)
+ .|+.++.||.|+++|.++|+.+..+.
T Consensus 312 ~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~ 341 (668)
T 1kv9_A 312 KPRKVLMQAPKNGFFYVLDRTNGKLISAEK 341 (668)
T ss_dssp EEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred cEEEEEEEECCCCEEEEEECCCCCEecccc
Confidence 5 68999999999999999999885543
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=91.70 E-value=2.2 Score=48.26 Aligned_cols=62 Identities=6% Similarity=-0.041 Sum_probs=47.7
Q ss_pred CeeEEEE-c-CCCCEEEEEe------------------CCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEe
Q 006229 557 KVESCHF-S-PDGKLLATGG------------------HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS 616 (655)
Q Consensus 557 ~V~sl~f-S-pdG~lLaSgs------------------~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS 616 (655)
.+..++| + |+++++++++ .++.|.++|.++++.+..+.--. .-.-++++|+|+++++.+
T Consensus 135 ~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~ 213 (595)
T 1fwx_A 135 GIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTS 213 (595)
T ss_dssp SEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEE
T ss_pred CCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEe
Confidence 4678887 5 8999988885 34679999999999888775211 345577999999999999
Q ss_pred CCC
Q 006229 617 ADR 619 (655)
Q Consensus 617 ~Dg 619 (655)
.+.
T Consensus 214 ~~s 216 (595)
T 1fwx_A 214 YNS 216 (595)
T ss_dssp SCT
T ss_pred cCc
Confidence 664
|
| >3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A | Back alignment and structure |
|---|
Probab=91.37 E-value=0.027 Score=48.20 Aligned_cols=58 Identities=21% Similarity=0.250 Sum_probs=41.9
Q ss_pred hhhhhhhhhc----------cc--ccc---cchhhhhHH-HHHHHH-HHhhcCCCCccchhhhhhhhhhccCCcc
Q 006229 271 LDQFRSGLLQ----------QQ--KSL---TQPYNQLQL-QQLMLQ-AQQNLASPSANDLESRKLRMLHNSRNMG 328 (655)
Q Consensus 271 ~~~~~~~~~~----------~~--~~~---~~~~~~~~~-~q~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (655)
||++|.+|.. |+ -|. .+|.+.|++ ++.|+. .++-.+....|+-|++|||..|+.|+..
T Consensus 16 LD~ir~Efe~~~~e~~~~k~q~~~eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~kmKq~YEeEI~rLr~eLe~r~~q 90 (92)
T 3vp9_A 16 LDAIRQEFLQVSQEANTYRLQNQKDYDFKMNQQLAEMQQIRNTVYERELTHRKMKDAYEEEIKHLKLGLEQRDHQ 90 (92)
T ss_dssp -CCTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 7999999964 22 243 677888877 777777 6666777889999999999999999743
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=91.24 E-value=2.9 Score=44.96 Aligned_cols=77 Identities=14% Similarity=0.074 Sum_probs=48.3
Q ss_pred CCCCeeEEEEcCCCCEEEEEeC-CC---cEEEEeCCCCeEE--EEecccCCCEEEEEEcC-CCCEEEEEeCCCcEEEEEC
Q 006229 554 STSKVESCHFSPDGKLLATGGH-DK---KAVLWCTESFTVK--STLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDT 626 (655)
Q Consensus 554 H~~~V~sl~fSpdG~lLaSgs~-Dg---tVrIWDl~t~~~l--~tl~gH~~~ItsVafsP-dg~~LaSgS~DgtVrVWDl 626 (655)
.......|+|+++|++|+.+.. ++ ...+|....+... ..+. .......++++| ++.++++-..++.|.+||.
T Consensus 177 ~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~ 255 (430)
T 3tc9_A 177 GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDF 255 (430)
T ss_dssp CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEET
T ss_pred CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEEC
Confidence 3455789999999996555554 22 2233332322211 2222 123457788999 7777777777889999999
Q ss_pred CCCeE
Q 006229 627 ENVRK 631 (655)
Q Consensus 627 ~tg~~ 631 (655)
.++..
T Consensus 256 ~~~~~ 260 (430)
T 3tc9_A 256 TTQET 260 (430)
T ss_dssp TTTEE
T ss_pred CCCcE
Confidence 87654
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=91.22 E-value=1.2 Score=48.45 Aligned_cols=115 Identities=13% Similarity=0.097 Sum_probs=63.4
Q ss_pred CCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEee-cCCCCCeeEEEEcC---CCCEEEEEeCCCc
Q 006229 503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI-PASTSKVESCHFSP---DGKLLATGGHDKK 578 (655)
Q Consensus 503 ~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l-~gH~~~V~sl~fSp---dG~lLaSgs~Dgt 578 (655)
.+.+++|+.. .+.+|.+...+.+........ ....-...++. +..+ .....+|..+.||| .+..|++=..|++
T Consensus 74 SpsG~lLAl~-g~~~V~Vv~LP~~~~~~~~~~-~~~~~q~~ty~-l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~ 150 (452)
T 3pbp_A 74 STSGDLLCLF-NDNEIFVMEVPWGYSNVEDVS-IQDAFQIFHYS-IDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDT 150 (452)
T ss_dssp CTTSSEEEEE-CSSEEEEEECCTTCSCCCCHH-HHHTTEEEEEE-GGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSC
T ss_pred CCCCCEEEEe-cCCeEEEEEecCccccCcccc-cccccceeEEE-cCCcccCCCCceeEEEeccccCCCCeEEEEecCCE
Confidence 5556677665 457888887664421111000 00000000000 0000 11357899999999 4568999999999
Q ss_pred EEEEeCCCC--eEEEEe---------cccCCCEEEEEEcCCCCEEEEEe--CCCcE
Q 006229 579 AVLWCTESF--TVKSTL---------EEHTQWITDVRFSPSLSRLATSS--ADRTV 621 (655)
Q Consensus 579 VrIWDl~t~--~~l~tl---------~gH~~~ItsVafsPdg~~LaSgS--~DgtV 621 (655)
||+||+... ++. .| ..+...|.+++|..++-.|...+ .+|-|
T Consensus 151 Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDI 205 (452)
T 3pbp_A 151 ITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDI 205 (452)
T ss_dssp EEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEE
T ss_pred EEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCE
Confidence 999999742 112 22 23346788899988654444433 44443
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=90.96 E-value=1.2 Score=45.15 Aligned_cols=72 Identities=13% Similarity=0.061 Sum_probs=50.7
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecc--------------------cCCCEEEEEEcC-CCCEEEEE
Q 006229 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE--------------------HTQWITDVRFSP-SLSRLATS 615 (655)
Q Consensus 557 ~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~g--------------------H~~~ItsVafsP-dg~~LaSg 615 (655)
...+++|+++|++++++..++.|..||..+++.. .+.. ....+..|++++ +++ |+.+
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~ 97 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIV 97 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEE
Confidence 4567899999998888889999999998876543 2210 123578999998 554 5555
Q ss_pred eCCCcEEEEECCCCe
Q 006229 616 SADRTVRVWDTENVR 630 (655)
Q Consensus 616 S~DgtVrVWDl~tg~ 630 (655)
...+.|.++|..++.
T Consensus 98 d~~~~i~~~d~~~g~ 112 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGH 112 (322)
T ss_dssp ETTTEEEEECTTCEE
T ss_pred ECCCCEEEEeCCCCE
Confidence 455568888877553
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=90.89 E-value=2.8 Score=42.24 Aligned_cols=81 Identities=14% Similarity=0.123 Sum_probs=61.3
Q ss_pred EeecCCCCCeeEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeEEEEec-ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 006229 549 QLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (655)
Q Consensus 549 ~~l~gH~~~V~sl~fSpdG~-lLaSgs~DgtVrIWDl~t~~~l~tl~-gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl 626 (655)
+.+.+-...+..++|+|++. ++++...++.|...|.. ++.++.+. +-....-.|++.+++.++++.-.++.|.++++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 45667667899999999766 55557778899999998 88877763 22356778888888887777667788999988
Q ss_pred CCCe
Q 006229 627 ENVR 630 (655)
Q Consensus 627 ~tg~ 630 (655)
....
T Consensus 99 ~~~~ 102 (255)
T 3qqz_A 99 TPNS 102 (255)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 6544
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=90.75 E-value=6.9 Score=41.43 Aligned_cols=94 Identities=14% Similarity=0.114 Sum_probs=67.2
Q ss_pred ceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCC-----CCeEEEEec-ccC-CCEEEEEE--cCCCC-EE
Q 006229 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE-----SFTVKSTLE-EHT-QWITDVRF--SPSLS-RL 612 (655)
Q Consensus 543 ~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~-----t~~~l~tl~-gH~-~~ItsVaf--sPdg~-~L 612 (655)
.+.+.++++.-- +.+..|.+.+....|+.+-+|.-|..+|.+ +++.+..+. +|- ..+..|++ .++++ +|
T Consensus 168 ~~~~lVR~f~lg-sq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyL 246 (355)
T 3amr_A 168 ISGKKVRAFKMN-SQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYL 246 (355)
T ss_dssp EEEEEEEEEECS-SCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEE
T ss_pred ccceEEEEecCC-CCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEE
Confidence 345667777654 468899999988899999999776666754 355665552 333 36888888 45666 66
Q ss_pred EEEe-CCCcEEEEECC-CCeEEEEEec
Q 006229 613 ATSS-ADRTVRVWDTE-NVRKLTFICC 637 (655)
Q Consensus 613 aSgS-~DgtVrVWDl~-tg~~v~~l~~ 637 (655)
+.+| .+.++.|||.. +.+.+..|..
T Consensus 247 ivSsQG~~s~~Vydr~~~~~~vg~f~I 273 (355)
T 3amr_A 247 MASSQGNSSYAIYDRQGKNKYVADFRI 273 (355)
T ss_dssp EEEEGGGTEEEEEESSTTCCEEEEEEE
T ss_pred EEEcCCCCEEEEEECCCCCcEEEEEEe
Confidence 6666 67899999997 6777777753
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=90.54 E-value=2.4 Score=45.70 Aligned_cols=77 Identities=10% Similarity=0.140 Sum_probs=47.0
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCC---Cc-EEEEeCCCCeE-EEEecccCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECC
Q 006229 554 STSKVESCHFSPDGKLLATGGHD---KK-AVLWCTESFTV-KSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTE 627 (655)
Q Consensus 554 H~~~V~sl~fSpdG~lLaSgs~D---gt-VrIWDl~t~~~-l~tl~gH~~~ItsVafsP-dg~~LaSgS~DgtVrVWDl~ 627 (655)
......+|+|+++|+++++.... .. +...+...+.. ...+. .-.....++++| ++.++++-..++.|+.+|..
T Consensus 180 ~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~ 258 (433)
T 4hw6_A 180 NIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPA 258 (433)
T ss_dssp CCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTT
T ss_pred CCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECC
Confidence 34568899999999955554321 22 22233222111 11121 234456788999 67777776678899999998
Q ss_pred CCeE
Q 006229 628 NVRK 631 (655)
Q Consensus 628 tg~~ 631 (655)
++..
T Consensus 259 ~g~~ 262 (433)
T 4hw6_A 259 TGTL 262 (433)
T ss_dssp TCCE
T ss_pred CCeE
Confidence 7766
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=90.33 E-value=1.6 Score=49.31 Aligned_cols=74 Identities=12% Similarity=0.127 Sum_probs=51.6
Q ss_pred CeeEEEEcCCCCEEEEEeC-CCcEEEEeCCCCeEEEEecccCCC-EEEEEEcCCCCEEEEEe-CC-----CcEEEEECCC
Q 006229 557 KVESCHFSPDGKLLATGGH-DKKAVLWCTESFTVKSTLEEHTQW-ITDVRFSPSLSRLATSS-AD-----RTVRVWDTEN 628 (655)
Q Consensus 557 ~V~sl~fSpdG~lLaSgs~-DgtVrIWDl~t~~~l~tl~gH~~~-ItsVafsPdg~~LaSgS-~D-----gtVrVWDl~t 628 (655)
...++++..++++++.|+. +..+.+||..+.+-...-.-+... -.++++.++++.++.|+ .| ..+.+||..+
T Consensus 244 ~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t 323 (656)
T 1k3i_A 244 FCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS 323 (656)
T ss_dssp SSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred ccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCC
Confidence 3446788899999999985 468999998876543322222222 23455667899999998 45 4699999987
Q ss_pred Ce
Q 006229 629 VR 630 (655)
Q Consensus 629 g~ 630 (655)
.+
T Consensus 324 ~~ 325 (656)
T 1k3i_A 324 KT 325 (656)
T ss_dssp TE
T ss_pred Cc
Confidence 65
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=90.10 E-value=10 Score=39.27 Aligned_cols=72 Identities=10% Similarity=-0.014 Sum_probs=49.2
Q ss_pred CeeEEEEcCC-CCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEE-EEeCC-CcEEEEECCC
Q 006229 557 KVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSAD-RTVRVWDTEN 628 (655)
Q Consensus 557 ~V~sl~fSpd-G~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~La-SgS~D-gtVrVWDl~t 628 (655)
....+++++. ++++++-...+.|.+.+++.......+...-.....|+++|.+.+|+ |-..+ +.|...+++.
T Consensus 117 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG 191 (349)
T 3v64_C 117 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG 191 (349)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred CccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC
Confidence 4568889874 55666666678999999876544434444445678999999665544 44444 7788888764
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=89.82 E-value=5.2 Score=40.26 Aligned_cols=99 Identities=8% Similarity=0.093 Sum_probs=59.0
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE---EEEec------ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 006229 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTV---KSTLE------EHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (655)
Q Consensus 557 ~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~---l~tl~------gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~ 627 (655)
....|++.+++.++++.-.+..+.++++..... +.... .+....-.|+|+|.+..|+++.......||.++
T Consensus 71 D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~ 150 (255)
T 3qqz_A 71 DLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN 150 (255)
T ss_dssp SEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE
T ss_pred ChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEc
Confidence 466788888888777766677888888754332 22221 234456899999999888887765555555554
Q ss_pred ---CCeEEEEEecc--cceeeeeceeeEEEecC
Q 006229 628 ---NVRKLTFICCY--KCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 628 ---tg~~v~~l~~~--~~~v~s~~Vss~~F~P~ 655 (655)
....+..+... ........+++++|+|.
T Consensus 151 g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~ 183 (255)
T 3qqz_A 151 GLLSSNELHISKDKALQRQFTLDDVSGAEFNQQ 183 (255)
T ss_dssp STTCSSCCEEEECHHHHHTCCSSCCCEEEEETT
T ss_pred ccccCCceeeecchhhccccccCCceeEEEcCC
Confidence 11122222210 01112335688888874
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=89.42 E-value=19 Score=37.80 Aligned_cols=73 Identities=8% Similarity=-0.024 Sum_probs=49.2
Q ss_pred CeeEEEEcCC-CCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEe-CC-CcEEEEECCCC
Q 006229 557 KVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-AD-RTVRVWDTENV 629 (655)
Q Consensus 557 ~V~sl~fSpd-G~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS-~D-gtVrVWDl~tg 629 (655)
....+++++. ++++++-...+.|.+.+++.......+...-.....|+++|.+.+|+.+. .+ +.|...++...
T Consensus 160 ~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~ 235 (386)
T 3v65_B 160 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS 235 (386)
T ss_dssp CCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred CccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC
Confidence 4567888874 55556666678899988876544434444446678999999766555444 44 67888888643
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=89.14 E-value=7.3 Score=39.04 Aligned_cols=74 Identities=20% Similarity=0.243 Sum_probs=47.7
Q ss_pred CCeeEEEEcCCCCEEEEEeCC-C-cEEEEeCCCCeEEEEec-ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 006229 556 SKVESCHFSPDGKLLATGGHD-K-KAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENV 629 (655)
Q Consensus 556 ~~V~sl~fSpdG~lLaSgs~D-g-tVrIWDl~t~~~l~tl~-gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg 629 (655)
..+.+++|+++|+++++.... + .|..+|..+++...... ........+++.+++..+++-+.++.|.++|..++
T Consensus 72 ~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~ 148 (306)
T 2p4o_A 72 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQP 148 (306)
T ss_dssp SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTT
T ss_pred CCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCC
Confidence 357889999999976665433 2 46667877776543322 12233455665665555666556889999998765
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=89.07 E-value=21 Score=36.13 Aligned_cols=73 Identities=7% Similarity=-0.064 Sum_probs=49.7
Q ss_pred CCeeEEEEcCC-CCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCC--CcEEEEECCC
Q 006229 556 SKVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD--RTVRVWDTEN 628 (655)
Q Consensus 556 ~~V~sl~fSpd-G~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~D--gtVrVWDl~t 628 (655)
.....+++++. ++++++-..++.|.+.|++.......+...-.....|+++|.+.+|+.+..+ +.|...++..
T Consensus 77 ~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG 152 (316)
T 1ijq_A 77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG 152 (316)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred CCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC
Confidence 34578899874 4555665677899999987654443344344567899999976665555443 6788888763
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=88.06 E-value=6.7 Score=45.09 Aligned_cols=77 Identities=13% Similarity=0.022 Sum_probs=57.8
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecc--------cCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 006229 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE--------HTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (655)
Q Consensus 555 ~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~g--------H~~~ItsVafsPdg~~LaSgS~DgtVrVWDl 626 (655)
...|.++...++|.+ ..|..++-|.+||..+++....... ....|.+++.+++++.|..|+.++-|.+||.
T Consensus 356 ~~~V~~i~~d~~g~l-WiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~ 434 (795)
T 4a2l_A 356 DNVVSCIVEDKDKNL-WIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHR 434 (795)
T ss_dssp CSSEEEEEECTTSCE-EEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEET
T ss_pred CCeeEEEEECCCCCE-EEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeC
Confidence 356999999988874 4577777899999887765443221 2467999999998886777888788999999
Q ss_pred CCCeEE
Q 006229 627 ENVRKL 632 (655)
Q Consensus 627 ~tg~~v 632 (655)
.+++..
T Consensus 435 ~~~~~~ 440 (795)
T 4a2l_A 435 NSGQVE 440 (795)
T ss_dssp TTCCEE
T ss_pred CCCcEE
Confidence 877643
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=88.04 E-value=0.32 Score=48.66 Aligned_cols=66 Identities=14% Similarity=0.107 Sum_probs=44.9
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE------EEEe--cccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 006229 557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTV------KSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (655)
Q Consensus 557 ~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~------l~tl--~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~ 627 (655)
.+.+++|+|+|.+.+. .++.+.-.+..+... -..+ .+-.. ..+|.|+|+|.+.++ .||.|.-|+--
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 6779999999997777 667766666544211 1111 01222 578999999998888 56999888763
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=87.66 E-value=25 Score=36.24 Aligned_cols=74 Identities=8% Similarity=0.056 Sum_probs=48.2
Q ss_pred CCeeEEEEcCCCC-EEEEEeCC-CcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCC
Q 006229 556 SKVESCHFSPDGK-LLATGGHD-KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENV 629 (655)
Q Consensus 556 ~~V~sl~fSpdG~-lLaSgs~D-gtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSg-S~DgtVrVWDl~tg 629 (655)
.....++++|.+. ++++-..+ +.|...+++.......+...-..-+.|+|+|++..|+-+ +..++|..+|+...
T Consensus 159 ~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~ 235 (349)
T 3v64_C 159 EKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS 235 (349)
T ss_dssp SCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence 4568899998555 55554444 778888886543332223234457899999876665544 45678999998743
|
| >1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1 | Back alignment and structure |
|---|
Probab=86.77 E-value=0.29 Score=41.60 Aligned_cols=38 Identities=18% Similarity=0.288 Sum_probs=31.1
Q ss_pred CccchHHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCCC
Q 006229 3 QNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTD 41 (655)
Q Consensus 3 ~~~~~~~~~L~~yIydyl~k~~~~~tA~~f~~e~~~~~~ 41 (655)
-+.+.+ .-||.-|++||..+|+.+++.+|.+|.+++.+
T Consensus 5 Lt~rQ~-eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~ 42 (88)
T 1uuj_A 5 LSQRQR-DELNRAIADYLRSNGYEEAYSVFKKEAELDMN 42 (88)
T ss_dssp CCHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCC
T ss_pred CCHHHH-HHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCC
Confidence 344443 35899999999999999999999999987754
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=86.76 E-value=7 Score=40.58 Aligned_cols=71 Identities=13% Similarity=0.097 Sum_probs=46.4
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE--EEEec---ccCCCEEEEEEcCC---CCEEEEE-eCC-----CcE
Q 006229 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV--KSTLE---EHTQWITDVRFSPS---LSRLATS-SAD-----RTV 621 (655)
Q Consensus 556 ~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~--l~tl~---gH~~~ItsVafsPd---g~~LaSg-S~D-----gtV 621 (655)
..-..++|.|||+++++ ..++.|++++ +++. +..+. ........|+|+|+ +.+|+.+ +.+ ..|
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 34578999999996655 5569999998 4442 22221 22456889999998 4444443 332 578
Q ss_pred EEEECCCC
Q 006229 622 RVWDTENV 629 (655)
Q Consensus 622 rVWDl~tg 629 (655)
..|++..+
T Consensus 108 ~r~~~~~~ 115 (352)
T 2ism_A 108 VRLRHLGE 115 (352)
T ss_dssp EEEEECSS
T ss_pred EEEEeCCC
Confidence 88887754
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=86.76 E-value=13 Score=42.60 Aligned_cols=76 Identities=8% Similarity=0.007 Sum_probs=56.3
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec----ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 006229 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE----EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVR 630 (655)
Q Consensus 555 ~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~----gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~ 630 (655)
...|.+++..++|++|..|..++-|.+||..+++...... -+...|.++...++|.+.+.. .+ -|.+||..+++
T Consensus 405 ~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~-Gl~~~~~~~~~ 482 (795)
T 4a2l_A 405 SNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-LS-ALVRFNPEQRS 482 (795)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SS-CEEEEETTTTE
T ss_pred CccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cC-ceeEEeCCCCe
Confidence 3569999999999867778887889999998876554322 235679999999888765554 34 58889988765
Q ss_pred EE
Q 006229 631 KL 632 (655)
Q Consensus 631 ~v 632 (655)
..
T Consensus 483 ~~ 484 (795)
T 4a2l_A 483 FT 484 (795)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=85.66 E-value=5.9 Score=41.33 Aligned_cols=72 Identities=15% Similarity=0.048 Sum_probs=46.3
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCe-EEEEec---ccCCCEEEEEEcCC---CCEE-EEEeC---C----Cc
Q 006229 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTLE---EHTQWITDVRFSPS---LSRL-ATSSA---D----RT 620 (655)
Q Consensus 556 ~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~-~l~tl~---gH~~~ItsVafsPd---g~~L-aSgS~---D----gt 620 (655)
..-..++|.|||+++++ ..++.|+++|. +++ .+..+. ........|+|+|+ +.+| ++-+. + ..
T Consensus 29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVT-ERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp SCEEEEEEEETTEEEEE-ETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCeEEEEcCCCeEEEE-eCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 44678999999985555 55699999874 454 222221 22356889999997 4444 44332 3 56
Q ss_pred EEEEECCCC
Q 006229 621 VRVWDTENV 629 (655)
Q Consensus 621 VrVWDl~tg 629 (655)
|..|++...
T Consensus 107 v~r~~~~~~ 115 (354)
T 3a9g_A 107 VIRGRLDGS 115 (354)
T ss_dssp EEEEEECSS
T ss_pred EEEEEECCC
Confidence 777887654
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=85.35 E-value=7.9 Score=40.76 Aligned_cols=76 Identities=11% Similarity=0.032 Sum_probs=50.0
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE--EEEe----cccCCCEEEEEEcCC---CCEE-EEE--eCCCc
Q 006229 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV--KSTL----EEHTQWITDVRFSPS---LSRL-ATS--SADRT 620 (655)
Q Consensus 553 gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~--l~tl----~gH~~~ItsVafsPd---g~~L-aSg--S~Dgt 620 (655)
.--..-..++|.|||++|++--..+.|++++..+++. +..+ .........|+|+|+ +.+| ++= ..+..
T Consensus 29 ~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~ 108 (347)
T 3das_A 29 TGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR 108 (347)
T ss_dssp CCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred cCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence 3345567999999999888776689999998766553 2222 123556899999995 3444 332 24556
Q ss_pred EEEEECCC
Q 006229 621 VRVWDTEN 628 (655)
Q Consensus 621 VrVWDl~t 628 (655)
|.-|.+..
T Consensus 109 v~R~~~~~ 116 (347)
T 3das_A 109 IVRMLYDE 116 (347)
T ss_dssp EEEEEBCT
T ss_pred EEEEEeCC
Confidence 66666654
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=85.03 E-value=6.9 Score=42.51 Aligned_cols=53 Identities=21% Similarity=0.211 Sum_probs=36.5
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE--EEEecc------cCCCEEEEEEcCC
Q 006229 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV--KSTLEE------HTQWITDVRFSPS 608 (655)
Q Consensus 556 ~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~--l~tl~g------H~~~ItsVafsPd 608 (655)
.....++|.|||+++++-...+.|++++..+++. +..+.. ....+..|+|+|+
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pd 87 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCC
Confidence 3567999999999887765545788888665543 223321 2456779999995
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=84.51 E-value=6.3 Score=41.64 Aligned_cols=111 Identities=12% Similarity=0.126 Sum_probs=65.3
Q ss_pred CCCcEEEEecCCCCCCCCccccccccCCC-ceeeeEEeecCCC-CCeeEEEEcCCCCEEEEEeC---C------------
Q 006229 514 LDDNVESFLSPDDADPRDRVGRSAEVGKG-FTFTEFQLIPAST-SKVESCHFSPDGKLLATGGH---D------------ 576 (655)
Q Consensus 514 ~D~tV~vW~s~d~~d~~d~~~~l~d~~~~-~t~~~v~~l~gH~-~~V~sl~fSpdG~lLaSgs~---D------------ 576 (655)
.|+++++|.+.... ....+.+++.... .....+..+.+.. ...+++++.++|++.++... |
T Consensus 123 ~dg~~~L~Vvnh~~--~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~ 200 (355)
T 3sre_A 123 DDNTVYLLVVNHPG--SSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGL 200 (355)
T ss_dssp TTCCEEEEEEECST--TCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTC
T ss_pred CCCcEEEEEEECCC--CCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccC
Confidence 36677777554432 1223333333322 2334455555432 35789999999998777652 1
Q ss_pred CcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECC
Q 006229 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTE 627 (655)
Q Consensus 577 gtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS-~DgtVrVWDl~ 627 (655)
..-+||.++.+++. .+...-..-+.|+|+||+++|+.+. ..++|.+||+.
T Consensus 201 ~~g~vyr~d~~~~~-~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~ 251 (355)
T 3sre_A 201 AWSFVTYYSPNDVR-VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKH 251 (355)
T ss_dssp CCEEEEEECTTCCE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred CccEEEEEECCeEE-EeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEEC
Confidence 23445544444333 2333344678999999998766655 57889999986
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=84.33 E-value=1.3 Score=50.17 Aligned_cols=71 Identities=11% Similarity=0.249 Sum_probs=52.0
Q ss_pred EEEEcC-CCCEEEEEeCCC-----------cEEEEeCCCCeE--EEEe-cccCCCEEEEEEcCCCCEEEEEeC-CCcEEE
Q 006229 560 SCHFSP-DGKLLATGGHDK-----------KAVLWCTESFTV--KSTL-EEHTQWITDVRFSPSLSRLATSSA-DRTVRV 623 (655)
Q Consensus 560 sl~fSp-dG~lLaSgs~Dg-----------tVrIWDl~t~~~--l~tl-~gH~~~ItsVafsPdg~~LaSgS~-DgtVrV 623 (655)
++++.+ ++++++.|+.+. .+.+||..+.+- +..+ ..+...+.++++..+++.++.|+. +..|.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 566777 899999988654 588999887642 2233 234555667888899999999985 557999
Q ss_pred EECCCCe
Q 006229 624 WDTENVR 630 (655)
Q Consensus 624 WDl~tg~ 630 (655)
||..+.+
T Consensus 270 yd~~t~~ 276 (656)
T 1k3i_A 270 YDSSSDS 276 (656)
T ss_dssp EEGGGTE
T ss_pred ecCcCCc
Confidence 9987654
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=84.00 E-value=35 Score=35.63 Aligned_cols=74 Identities=7% Similarity=0.024 Sum_probs=48.3
Q ss_pred CCeeEEEEcCCCCEEEEE-eCC-CcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCC
Q 006229 556 SKVESCHFSPDGKLLATG-GHD-KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENV 629 (655)
Q Consensus 556 ~~V~sl~fSpdG~lLaSg-s~D-gtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSg-S~DgtVrVWDl~tg 629 (655)
.....|+++|++.+|+.+ ..+ +.|...+++.......+...-..-+.|+|+|++..|+.+ +..+.|..+|+...
T Consensus 202 ~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~ 278 (386)
T 3v65_B 202 EKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS 278 (386)
T ss_dssp SCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSC
T ss_pred CCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence 456889999865544444 344 678888887543333333334457899999876655544 45678999998743
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=83.48 E-value=4.3 Score=43.60 Aligned_cols=71 Identities=11% Similarity=0.186 Sum_probs=51.4
Q ss_pred CeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeEEEEec-ccCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECC
Q 006229 557 KVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTE 627 (655)
Q Consensus 557 ~V~sl~fSp-dG~lLaSgs~DgtVrIWDl~t~~~l~tl~-gH~~~ItsVafsPdg~~L-aSgS~DgtVrVWDl~ 627 (655)
....++++| +|.++++-..++.|..+|..++.....+. +....-+.|+|+|++++| ++-...++|.++|..
T Consensus 227 ~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 227 NCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp SCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred CceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 356788999 78777777778899999998776532222 222456789999999954 555567889998765
|
| >2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A | Back alignment and structure |
|---|
Probab=83.46 E-value=0.74 Score=39.24 Aligned_cols=32 Identities=25% Similarity=0.424 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHhcCCCCCC
Q 006229 11 MLDVYIYDYLLKRKLHASAKAFQTEGKVSTDP 42 (655)
Q Consensus 11 ~L~~yIydyl~k~~~~~tA~~f~~e~~~~~~~ 42 (655)
-+|--||-||...|+..||-+|.+|++|...+
T Consensus 7 evN~LI~RYLqEsGf~hsAf~f~~Es~i~~~~ 38 (90)
T 2xtc_A 7 EVNFLVYRYLQESGFSHSAFTFGIESHISQSN 38 (90)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTTGGGSC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhcCCccc
Confidence 58989999999999999999999999986543
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=82.84 E-value=50 Score=34.66 Aligned_cols=75 Identities=8% Similarity=-0.016 Sum_probs=52.3
Q ss_pred CCCeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEe-C-CCcEEEEECCCC
Q 006229 555 TSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-A-DRTVRVWDTENV 629 (655)
Q Consensus 555 ~~~V~sl~fSp-dG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS-~-DgtVrVWDl~tg 629 (655)
......+++.+ .++++++-...+.|.+.|++.......+...-.....|+++|.+.+|+-.. . .+.|...++...
T Consensus 158 ~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~ 235 (400)
T 3p5b_L 158 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV 235 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSC
T ss_pred CCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCC
Confidence 34567889988 555666666778999999986655544544455688999999766655544 2 367888888643
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=82.71 E-value=15 Score=37.39 Aligned_cols=80 Identities=11% Similarity=0.218 Sum_probs=53.4
Q ss_pred CceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeC--CCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCC
Q 006229 542 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT--ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 619 (655)
Q Consensus 542 ~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl--~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~Dg 619 (655)
+.++..+.. .+...+.++.|++++.+++.+.....++-+|- .+.+.+. .++...+.+|.+.+++..+ .++.+|
T Consensus 151 G~tW~~~~~--~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~-~~~~~G 225 (327)
T 2xbg_A 151 GKNWQALVQ--EAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLW-MIVNGG 225 (327)
T ss_dssp TSSEEEEEC--SCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEE-EEETTT
T ss_pred CCCCEEeec--CCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEE-EEeCCc
Confidence 344554432 44567899999999998887766555555663 3444442 2456789999999988755 455678
Q ss_pred cEEEEEC
Q 006229 620 TVRVWDT 626 (655)
Q Consensus 620 tVrVWDl 626 (655)
.|++++.
T Consensus 226 ~~~~s~~ 232 (327)
T 2xbg_A 226 KIAFSDP 232 (327)
T ss_dssp EEEEEET
T ss_pred eEEEecC
Confidence 8887753
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=82.62 E-value=10 Score=45.17 Aligned_cols=39 Identities=21% Similarity=0.152 Sum_probs=34.6
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEec
Q 006229 599 WITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICC 637 (655)
Q Consensus 599 ~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~ 637 (655)
.|.+++..++..+|+|-|.|+++||||+.++.|+.+...
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 577788888889999999999999999999999988653
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=81.80 E-value=44 Score=34.95 Aligned_cols=62 Identities=15% Similarity=0.070 Sum_probs=35.1
Q ss_pred CCCeeEEEEcCC----CCEEEEEe--CCCcEEEEeCCC----------CeEE-EEec-ccCCCEEEEEEcCCCCEEEEEe
Q 006229 555 TSKVESCHFSPD----GKLLATGG--HDKKAVLWCTES----------FTVK-STLE-EHTQWITDVRFSPSLSRLATSS 616 (655)
Q Consensus 555 ~~~V~sl~fSpd----G~lLaSgs--~DgtVrIWDl~t----------~~~l-~tl~-gH~~~ItsVafsPdg~~LaSgS 616 (655)
......|+|+|| +.+.++-+ .+..|.-|.+.. .+.+ ..+. +....-..|.|.|||.++++.+
T Consensus 79 ~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G 158 (347)
T 3das_A 79 EGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG 158 (347)
T ss_dssp TBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred CCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence 356789999995 44433322 344455555443 1222 2222 2223456799999998887765
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=81.78 E-value=36 Score=34.63 Aligned_cols=72 Identities=8% Similarity=-0.027 Sum_probs=49.2
Q ss_pred CeeEEEEcC-CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEe--CCCcEEEEECCC
Q 006229 557 KVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS--ADRTVRVWDTEN 628 (655)
Q Consensus 557 ~V~sl~fSp-dG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS--~DgtVrVWDl~t 628 (655)
....+++.+ .++++++-...+.|.+++++.......+.........|+++|.+.+|+-+. ..+.|...+++.
T Consensus 80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG 154 (318)
T 3sov_A 80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG 154 (318)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS
T ss_pred CccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC
Confidence 456788887 555666666778999999876443333334455678999999766655554 256788888763
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=81.76 E-value=31 Score=38.79 Aligned_cols=76 Identities=11% Similarity=0.038 Sum_probs=54.4
Q ss_pred EEEEcCCCCEEEEEeCC----------------CcEEEEeCCCCeEEEEecc--cCC--------CEEEEEEc-CCC---
Q 006229 560 SCHFSPDGKLLATGGHD----------------KKAVLWCTESFTVKSTLEE--HTQ--------WITDVRFS-PSL--- 609 (655)
Q Consensus 560 sl~fSpdG~lLaSgs~D----------------gtVrIWDl~t~~~l~tl~g--H~~--------~ItsVafs-Pdg--- 609 (655)
...+.++..+++.+..+ ..|..+|.++|+.+-.+.. |.. .|. +... .+|
T Consensus 245 ~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~ 323 (599)
T 1w6s_A 245 WYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKAR 323 (599)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEE
T ss_pred ceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEE
Confidence 45666777777777655 3799999999998876653 321 121 2222 567
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEEe
Q 006229 610 SRLATSSADRTVRVWDTENVRKLTFIC 636 (655)
Q Consensus 610 ~~LaSgS~DgtVrVWDl~tg~~v~~l~ 636 (655)
..|+.++.+|.|.+.|.++|+.+..+.
T Consensus 324 ~~v~~~~~~G~l~~lD~~tG~~lw~~~ 350 (599)
T 1w6s_A 324 KLLTHPDRNGIVYTLDRTDGALVSANK 350 (599)
T ss_dssp EEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EEEEEECCCcEEEEEECCCCCEeeccc
Confidence 568889999999999999999887665
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=81.29 E-value=5.4 Score=48.51 Aligned_cols=39 Identities=21% Similarity=0.152 Sum_probs=33.7
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEec
Q 006229 599 WITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICC 637 (655)
Q Consensus 599 ~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~ 637 (655)
.|.+++..++..+|+|-|.|+++||||+.++.|+.+...
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence 456667778889999999999999999999999988653
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=80.52 E-value=10 Score=39.83 Aligned_cols=84 Identities=5% Similarity=0.053 Sum_probs=55.2
Q ss_pred CCCCCeeEEEEcCC-CCEEEEEeCCCcEEEEeCCCCeEEEE-ecc----cCC--CEEEEEE---cCCCCEEEEEe-----
Q 006229 553 ASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKST-LEE----HTQ--WITDVRF---SPSLSRLATSS----- 616 (655)
Q Consensus 553 gH~~~V~sl~fSpd-G~lLaSgs~DgtVrIWDl~t~~~l~t-l~g----H~~--~ItsVaf---sPdg~~LaSgS----- 616 (655)
...-.-.|++|++. ++++++.-..++|..||...+..... +.+ ... .+..|.| .|++++++...
T Consensus 10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af 89 (334)
T 2p9w_A 10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSF 89 (334)
T ss_dssp CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTT
T ss_pred CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccc
Confidence 33344568999884 44555544899999999986644333 332 111 3689999 68877777533
Q ss_pred --------CCCcEEEEECC---CCeEEEEEe
Q 006229 617 --------ADRTVRVWDTE---NVRKLTFIC 636 (655)
Q Consensus 617 --------~DgtVrVWDl~---tg~~v~~l~ 636 (655)
.+..|..+|+. +++.+..+.
T Consensus 90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~d 120 (334)
T 2p9w_A 90 NFADQSSHGASSFHSFNLPLSENSKPVWSVN 120 (334)
T ss_dssp CTTSCCSSSCCEEEEEESSCCTTCCCSEEEE
T ss_pred cccccccCCCCEEEEEcCCcCCCCCEEEEec
Confidence 26789999999 776654443
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=80.15 E-value=24 Score=36.43 Aligned_cols=61 Identities=11% Similarity=0.001 Sum_probs=36.9
Q ss_pred CCeeEEEEcCC---CCEEEEE-eCC-----CcEEEEeCCCCe-----E-EEEec---ccCCCEEEEEEcCCCCEEEEEe
Q 006229 556 SKVESCHFSPD---GKLLATG-GHD-----KKAVLWCTESFT-----V-KSTLE---EHTQWITDVRFSPSLSRLATSS 616 (655)
Q Consensus 556 ~~V~sl~fSpd---G~lLaSg-s~D-----gtVrIWDl~t~~-----~-l~tl~---gH~~~ItsVafsPdg~~LaSgS 616 (655)
.....|+|+|| +.+|+.+ ..+ ..|..|+..... . +..+. +.......|+|.|+|.++++.+
T Consensus 75 ~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 75 SGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp CSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred CCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 45789999998 4444443 332 567777776431 1 22233 1112346899999998777654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 655 | ||||
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 9e-17 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 5e-12 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-08 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-08 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 7e-07 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 8e-06 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-16 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-11 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-09 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-08 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-05 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-04 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-16 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 9e-06 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 8e-05 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-04 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-14 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-09 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-08 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 3e-05 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 3e-04 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 3e-14 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 4e-10 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 5e-08 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-07 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 4e-04 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-11 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 8e-09 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 3e-11 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-10 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 1e-10 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 0.001 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-10 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 3e-07 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 3e-04 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 8e-10 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-07 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 5e-07 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 9e-07 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 5e-05 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 9e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 5e-09 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 1e-08 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 3e-07 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 8e-09 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 5e-08 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 5e-07 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 1e-05 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 7e-08 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 6e-07 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 6e-05 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 1e-04 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 3e-04 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 1e-07 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 3e-07 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 1e-04 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-07 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 6e-07 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.003 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 1e-07 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-04 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-06 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 8e-05 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.002 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.003 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-05 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-05 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 2e-05 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 4e-05 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 7e-04 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 1e-04 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 0.002 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 4e-04 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 0.004 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 79.4 bits (194), Expect = 9e-17
Identities = 20/82 (24%), Positives = 35/82 (42%)
Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
T + + V F GK + + DK +W ++ TL H ++T +
Sbjct: 236 TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSL 295
Query: 604 RFSPSLSRLATSSADRTVRVWD 625
F + + T S D+TV+VW+
Sbjct: 296 DFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 65.1 bits (157), Expect = 5e-12
Identities = 21/90 (23%), Positives = 36/90 (40%)
Query: 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITD 602
+ + + E+ G L +G DK +W + TL H W+
Sbjct: 193 WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRG 252
Query: 603 VRFSPSLSRLATSSADRTVRVWDTENVRKL 632
V F + + + D+T+RVWD +N R +
Sbjct: 253 VLFHSGGKFILSCADDKTLRVWDYKNKRCM 282
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 54.7 bits (130), Expect = 1e-08
Identities = 13/53 (24%), Positives = 22/53 (41%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 607
S V F P ++ + D +W E+ + TL+ HT + D+ F
Sbjct: 17 RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH 69
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 54.4 bits (129), Expect = 2e-08
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 590 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628
K L H +T V F P S + ++S D T++VWD E
Sbjct: 10 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYET 48
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 49.4 bits (116), Expect = 7e-07
Identities = 18/87 (20%), Positives = 36/87 (41%)
Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620
P+G + + DK +W ++ T H +W+ VR + + +A+ S D+T
Sbjct: 107 VSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQT 166
Query: 621 VRVWDTENVRKLTFICCYKCIFVSTAI 647
VRVW + ++ + +
Sbjct: 167 VRVWVVATKECKAELREHRHVVECISW 193
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 45.9 bits (107), Expect = 8e-06
Identities = 21/131 (16%), Positives = 41/131 (31%), Gaps = 25/131 (19%)
Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
T + V + DG L+A+ +D+ +W + K+ L EH + +
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI 191
Query: 604 RF--------------------SPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFV 643
+ L + S D+T+++WD T +C +
Sbjct: 192 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS-----TGMCLMTLVGH 246
Query: 644 STAIGSCFFAP 654
+ F
Sbjct: 247 DNWVRGVLFHS 257
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 79.4 bits (194), Expect = 1e-16
Identities = 16/70 (22%), Positives = 28/70 (40%)
Query: 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS 615
+ S FS G+LL G D +W L H ++ + + +AT
Sbjct: 271 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG 330
Query: 616 SADRTVRVWD 625
S D +++W+
Sbjct: 331 SWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 62.4 bits (150), Expect = 4e-11
Identities = 22/91 (24%), Positives = 28/91 (30%), Gaps = 2/91 (2%)
Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW--IT 601
Q S + + F P+G ATG D L+ + T IT
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGIT 274
Query: 602 DVRFSPSLSRLATSSADRTVRVWDTENVRKL 632
V FS S L D VWD +
Sbjct: 275 SVSFSKSGRLLLAGYDDFNCNVWDALKADRA 305
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 57.8 bits (138), Expect = 1e-09
Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 3/98 (3%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
V S +PD +L +G D A LW + T H I + F P+ + AT S
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD 246
Query: 618 DRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655
D T R++D + + Y + I S F+ +
Sbjct: 247 DATCRLFDLRADQ---ELMTYSHDNIICGITSVSFSKS 281
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 53.6 bits (127), Expect = 4e-08
Identities = 13/74 (17%), Positives = 34/74 (45%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
+K+ + H+ D +LL + D K ++W + + + + W+ ++PS + +A
Sbjct: 55 LAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVAC 114
Query: 615 SSADRTVRVWDTEN 628
D +++ +
Sbjct: 115 GGLDNICSIYNLKT 128
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 44.7 bits (104), Expect = 2e-05
Identities = 12/61 (19%), Positives = 23/61 (37%)
Query: 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTA 646
+ TL H I + + L ++S D + +WD+ K+ I ++ A
Sbjct: 45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104
Query: 647 I 647
Sbjct: 105 Y 105
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 42.4 bits (98), Expect = 1e-04
Identities = 8/39 (20%), Positives = 15/39 (38%)
Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582
++ ++V + DG +ATG D +W
Sbjct: 301 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 79.1 bits (193), Expect = 2e-16
Identities = 14/85 (16%), Positives = 33/85 (38%), Gaps = 2/85 (2%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTES--FTVKSTLEEHTQWITDVRFSPSLSRLATS 615
+ ++ D +A ++ + ++ + L+EH +T V ++P +R+ T
Sbjct: 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69
Query: 616 SADRTVRVWDTENVRKLTFICCYKC 640
DR VW + + +
Sbjct: 70 GTDRNAYVWTLKGRTWKPTLVILRI 94
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 46.0 bits (107), Expect = 9e-06
Identities = 10/82 (12%), Positives = 22/82 (26%), Gaps = 5/82 (6%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP----SLS 610
+ DKKA + + H ++ + S
Sbjct: 284 LDVPKQSSQRGLTARERFQNLDKKASSEGSAAAG-AGLDSLHKNSVSQISVLSGGKAKCS 342
Query: 611 RLATSSADRTVRVWDTENVRKL 632
+ T+ D + +WD ++
Sbjct: 343 QFCTTGMDGGMSIWDVRSLESA 364
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 42.9 bits (99), Expect = 8e-05
Identities = 3/33 (9%), Positives = 14/33 (42%)
Query: 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628
+ I+ ++ +++A + V +++
Sbjct: 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSG 38
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 42.2 bits (97), Expect = 2e-04
Identities = 20/111 (18%), Positives = 40/111 (36%), Gaps = 2/111 (1%)
Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STLEEHTQWIT 601
+ + + +V ++PD + T G D+ A +W + T K + +
Sbjct: 40 KWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAAR 99
Query: 602 DVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFF 652
VR++P+ + A S R + + E K ST + +
Sbjct: 100 CVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWH 150
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.5 bits (176), Expect = 2e-14
Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 1/66 (1%)
Query: 560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 619
S F+ GK + G D W T + + + S + T S D+
Sbjct: 270 SLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDK 328
Query: 620 TVRVWD 625
V++
Sbjct: 329 KATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.3 bits (139), Expect = 1e-09
Identities = 23/109 (21%), Positives = 35/109 (32%), Gaps = 4/109 (3%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 606
FQ S S H + DG++ D +TL H + + V S
Sbjct: 3 FQGAMGSK-PAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLN-HGEVVCAVTIS 60
Query: 607 PSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655
+ T V+VWD + + + C+ I SC P
Sbjct: 61 NPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD 108
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.8 bits (130), Expect = 1e-08
Identities = 14/93 (15%), Positives = 24/93 (25%), Gaps = 6/93 (6%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-----HTQWITDVRFSPSL 609
V + S + + TGG +W KS + + +I + P
Sbjct: 51 GEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG 109
Query: 610 SRLATSSADRTVRVWDTENVRKLTFICCYKCIF 642
L T+ +WD
Sbjct: 110 CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAP 142
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.0 bits (102), Expect = 3e-05
Identities = 12/77 (15%), Positives = 25/77 (32%), Gaps = 1/77 (1%)
Query: 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS 615
S++ S + P G+ LA G + H + ++F+ ++
Sbjct: 225 SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL-HLHESCVLSLKFAYCGKWFVST 283
Query: 616 SADRTVRVWDTENVRKL 632
D + W T +
Sbjct: 284 GKDNLLNAWRTPYGASI 300
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.9 bits (94), Expect = 3e-04
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLW 582
+S V SC S D K + TG DKKA ++
Sbjct: 306 SSSVLSCDISVDDKYIVTGSGDKKATVY 333
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 72.9 bits (177), Expect = 3e-14
Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 6/81 (7%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV------RFSPS 608
V S + + + + +G D+ + W +S L+ H + V P
Sbjct: 308 KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPE 367
Query: 609 LSRLATSSADRTVRVWDTENV 629
+ AT S D R+W + +
Sbjct: 368 YNVFATGSGDCKARIWKYKKI 388
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.8 bits (143), Expect = 4e-10
Identities = 22/99 (22%), Positives = 39/99 (39%), Gaps = 12/99 (12%)
Query: 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS------------TL 593
+E + V S F+ DG+ + +G D+ LW ++ KS T
Sbjct: 245 SENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY 304
Query: 594 EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKL 632
H ++ V + + + + S DR V WD ++ L
Sbjct: 305 IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL 343
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.3 bits (126), Expect = 5e-08
Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 19/106 (17%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE------------------H 596
TS V FS DG+ LATG +K ++ ++ + L +
Sbjct: 62 TSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSS 120
Query: 597 TQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIF 642
+I V FSP LAT + DR +R+WD EN + + + ++
Sbjct: 121 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDI 166
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.7 bits (122), Expect = 2e-07
Identities = 20/108 (18%), Positives = 38/108 (35%), Gaps = 14/108 (12%)
Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-------HTQWITDVRFSPSLSRLA 613
DGK +A G D+ +W +E+ + L+ H + V F+ +
Sbjct: 211 AVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV 270
Query: 614 TSSADRTVRVWDTENVRKLTFICC-------YKCIFVSTAIGSCFFAP 654
+ S DR+V++W+ +N + I + S
Sbjct: 271 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ 318
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.9 bits (94), Expect = 4e-04
Identities = 13/91 (14%), Positives = 31/91 (34%), Gaps = 7/91 (7%)
Query: 570 LATGGHDKKAVLWCTES-----FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624
+ +L+ + +L+ HT + V+FS LAT ++T +V+
Sbjct: 31 ALKKQTNDYYILYNPALPREIDVELHKSLD-HTSVVCCVKFSNDGEYLATGC-NKTTQVY 88
Query: 625 DTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655
+ + + + +P+
Sbjct: 89 RVSDGSLVARLSDDSAANKDPENLNTSSSPS 119
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 63.4 bits (152), Expect = 2e-11
Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 2/88 (2%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
+ V +C + + TG DK ++ + + L H + ++++ L +
Sbjct: 12 MTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVS 69
Query: 615 SSADRTVRVWDTENVRKLTFICCYKCIF 642
S DRTVRVWD + +
Sbjct: 70 GSTDRTVRVWDIKKGCCTHVFEGHNSTV 97
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.7 bits (132), Expect = 8e-09
Identities = 10/69 (14%), Positives = 22/69 (31%), Gaps = 3/69 (4%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTLEEHTQWITDVRFSPSLSRLATSS 616
F +L +G + + ++ S V + + + I V F + +A
Sbjct: 285 SAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVE 342
Query: 617 ADRTVRVWD 625
D +
Sbjct: 343 KDGQSFLEI 351
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 62.6 bits (150), Expect = 3e-11
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ-WITDVRFSPSLSRLATSSADR 619
+SPDG +A+ DK +W + V+ T+ T+ + + L + SA+
Sbjct: 244 LTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANG 303
Query: 620 TVRVWDTE 627
+ + E
Sbjct: 304 FINFVNPE 311
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 60.3 bits (144), Expect = 2e-10
Identities = 18/91 (19%), Positives = 28/91 (30%), Gaps = 2/91 (2%)
Query: 548 FQLIPASTS-KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 606
F +P + +P G + + S T EH+ T + S
Sbjct: 9 FPSLPRTARGTAVVLGNTPAGDKIQYC-NGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTS 67
Query: 607 PSLSRLATSSADRTVRVWDTENVRKLTFICC 637
PS A+ VR+WDT +
Sbjct: 68 PSGYYCASGDVHGNVRIWDTTQTTHILKTTI 98
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 61.4 bits (147), Expect = 1e-10
Identities = 8/85 (9%), Positives = 20/85 (23%), Gaps = 4/85 (4%)
Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
+ + +S + + + + E +TD+
Sbjct: 265 DYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVK----TRKVTEVKNNLTDL 320
Query: 604 RFSPSLSRLATSSADRTVRVWDTEN 628
R S + D + + E
Sbjct: 321 RLSADRKTVMVRKDDGKIYTFPLEK 345
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 39.5 bits (90), Expect = 0.001
Identities = 8/44 (18%), Positives = 15/44 (34%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ 598
+ + S D K + D K + E + T+E +
Sbjct: 314 KNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETDKR 357
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.6 bits (142), Expect = 2e-10
Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 560 SCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFSPSLSRLATSSAD 618
+ + L+ATG D ++ + + L H + ++ + S L +S AD
Sbjct: 220 ANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP-STLVSSGAD 278
Query: 619 RTVRVWD 625
++ W+
Sbjct: 279 ACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.0 bits (117), Expect = 3e-07
Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Query: 592 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRK 631
T+ H + IT + +P L + S D + W + ++ +
Sbjct: 8 TISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQ 43
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.7 bits (93), Expect = 3e-04
Identities = 9/54 (16%), Positives = 22/54 (40%), Gaps = 9/54 (16%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS 608
+ + +P L +G +D + + W + S ++H+ I + S +
Sbjct: 13 NKGITALTVNP----LISGSYDGRIMEW-----SSSSMHQDHSNLIVSLDNSKA 57
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.7 bits (140), Expect = 8e-10
Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 609
V +C G + +G D +W + TL HT + + ++
Sbjct: 16 DDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNI 69
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.1 bits (123), Expect = 1e-07
Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 2/80 (2%)
Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620
DG + +G D +W E+ TL H + + ++ L + +AD T
Sbjct: 181 YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNI--LVSGNADST 238
Query: 621 VRVWDTENVRKLTFICCYKC 640
V++WD + + L +
Sbjct: 239 VKIWDIKTGQCLQTLQGPNK 258
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.8 bits (117), Expect = 5e-07
Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKL 632
W L+ H + +R+ + S D T++VW + L
Sbjct: 1 WRRGELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCL 50
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.0 bits (115), Expect = 9e-07
Identities = 12/74 (16%), Positives = 21/74 (28%), Gaps = 9/74 (12%)
Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-----HTQWITDVRFSPSLSRLATS 615
+ + T D LW ++ L + +R S + A
Sbjct: 264 TCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVG 323
Query: 616 SADRT----VRVWD 625
S + T + V D
Sbjct: 324 SRNGTEETKLLVLD 337
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.3 bits (100), Expect = 5e-05
Identities = 16/99 (16%), Positives = 35/99 (35%), Gaps = 5/99 (5%)
Query: 560 SCHFSPDGKLLATGGHDKKAVLW---CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS 616
+ +L +G D +W + +H +T ++F+ + TSS
Sbjct: 220 TSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFV--ITSS 277
Query: 617 ADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655
D TV++WD + + + + + + T
Sbjct: 278 DDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNT 316
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.9 bits (99), Expect = 9e-05
Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620
DG+ + +G +D +W E+ T TL+ HT + ++F + + S D +
Sbjct: 141 RCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGI--HVVSGSLDTS 198
Query: 621 VRVWDTENVRKLTFICCYKCIFVSTAIGSCFFA 653
+RVWD E + + ++ + +
Sbjct: 199 IRVWDVETGNCIHTLTGHQSLTSGMELKDNILV 231
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 55.8 bits (132), Expect = 5e-09
Identities = 16/99 (16%), Positives = 29/99 (29%), Gaps = 3/99 (3%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLA 613
+ + S DGK L + + W + + H IT ++ + L
Sbjct: 12 NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK-GDLF 70
Query: 614 TSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFF 652
T S D ++V + S +G
Sbjct: 71 TVSWDDHLKVVPAGG-SGVDSSKAVANKLSSQPLGLAVS 108
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 54.6 bits (129), Expect = 1e-08
Identities = 8/41 (19%), Positives = 16/41 (39%)
Query: 588 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628
++ H + IT + S L ++ A+ + WD
Sbjct: 3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIST 43
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 50.4 bits (118), Expect = 3e-07
Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 2/67 (2%)
Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSAD 618
+SPD LATG D ++W + + H + + + + ++ D
Sbjct: 230 VSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQD 289
Query: 619 RTVRVWD 625
++ W+
Sbjct: 290 SNIKFWN 296
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.2 bits (131), Expect = 8e-09
Identities = 9/99 (9%), Positives = 23/99 (23%), Gaps = 4/99 (4%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE---EHTQWITDVR 604
Q+ A + P LL D ++ + L + +
Sbjct: 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN 63
Query: 605 FSP-SLSRLATSSADRTVRVWDTENVRKLTFICCYKCIF 642
F + ++ + + D + +
Sbjct: 64 FIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANL 102
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.9 bits (125), Expect = 5e-08
Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 592 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCF 651
+ +I+D++ PS S L +S D ++ V+ + K + + + + C
Sbjct: 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN--VDLLQSLRYKHPLLCCN 63
Query: 652 FAP 654
F
Sbjct: 64 FID 66
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.8 bits (117), Expect = 5e-07
Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 619
S FSP K L T G D W ++ + + V+ + S + L +++D
Sbjct: 256 SIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLATSDD 314
Query: 620 TVRVWD 625
T +
Sbjct: 315 TFKTNA 320
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.6 bits (106), Expect = 1e-05
Identities = 10/87 (11%), Positives = 25/87 (28%), Gaps = 15/87 (17%)
Query: 561 CHFSPDGKLLATGGHDKKAVLWCTES---------------FTVKSTLEEHTQWITDVRF 605
+ + A D + + + + + + F
Sbjct: 200 ALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEF 259
Query: 606 SPSLSRLATSSADRTVRVWDTENVRKL 632
SP L T+ +D + W+ + +K+
Sbjct: 260 SPRHKFLYTAGSDGIISCWNLQTRKKI 286
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.2 bits (123), Expect = 7e-08
Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 11/74 (14%)
Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKS---------TLEEHTQWITDVRFSPSLSR 611
D K + +G +D K +W + TL EH+ + ++F +
Sbjct: 222 RCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF--Q 279
Query: 612 LATSSADRTVRVWD 625
+ +SS D T+ +WD
Sbjct: 280 IVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.5 bits (116), Expect = 6e-07
Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 609
TSK C D + + +G D +W + K L HT + +++ +
Sbjct: 13 ETSKGVYC-LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERV 67
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.9 bits (99), Expect = 6e-05
Identities = 18/93 (19%), Positives = 37/93 (39%), Gaps = 2/93 (2%)
Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620
D K + + D+ +W T + TL H + I +++ L + + S+D T
Sbjct: 142 NVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRL--VVSGSSDNT 199
Query: 621 VRVWDTENVRKLTFICCYKCIFVSTAIGSCFFA 653
+R+WD E L + ++ + +
Sbjct: 200 IRLWDIECGACLRVLEGHEELVRCIRFDNKRIV 232
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.5 bits (98), Expect = 1e-04
Identities = 12/86 (13%), Positives = 21/86 (24%), Gaps = 2/86 (2%)
Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620
+L+ +G D LW E R+ + + D
Sbjct: 182 ACLQYRDRLVVSGSSDNTIRLWDIECGACLRV--LEGHEELVRCIRFDNKRIVSGAYDGK 239
Query: 621 VRVWDTENVRKLTFICCYKCIFVSTA 646
++VWD C+
Sbjct: 240 IKVWDLVAALDPRAPAGTLCLRTLVE 265
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.0 bits (94), Expect = 3e-04
Identities = 5/45 (11%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 591 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFI 635
E ++ + +++ ++ + D T+++WD + +
Sbjct: 9 HCRSETSKGVYCLQYDDQ--KIVSGLRDNTIKIWDKNTLECKRIL 51
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.8 bits (122), Expect = 1e-07
Identities = 11/68 (16%), Positives = 23/68 (33%), Gaps = 3/68 (4%)
Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS---RLATSSA 617
D + AT G D +W + Q + + + + R+ + S
Sbjct: 257 ALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSL 316
Query: 618 DRTVRVWD 625
D T+ ++
Sbjct: 317 DGTLNFYE 324
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.7 bits (119), Expect = 3e-07
Identities = 15/113 (13%), Positives = 31/113 (27%), Gaps = 10/113 (8%)
Query: 552 PAST-SKVESCHFSPDGKLLATGGHDKKAV----LWCTESFTVKSTLEEHTQWITDVRFS 606
P++ + + P +A V ++ V + +T V+FS
Sbjct: 13 PSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFS 72
Query: 607 PSLS--RLATSSADRTVRVWDTEN---VRKLTFICCYKCIFVSTAIGSCFFAP 654
P L + V VW + + ++ I +
Sbjct: 73 PIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF 125
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.6 bits (98), Expect = 1e-04
Identities = 21/123 (17%), Positives = 37/123 (30%), Gaps = 12/123 (9%)
Query: 530 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLWCTES- 586
+ R + G Q +S V + FSP + L +G K ++W
Sbjct: 38 KSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFD 97
Query: 587 -------FTVKSTLEEHTQWITDVRFSPSLSRLA--TSSADRTVRVWDTENVRKLTFICC 637
VKS + I+D+ + RL D ++ L +
Sbjct: 98 KESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSG 157
Query: 638 YKC 640
+
Sbjct: 158 HSQ 160
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 51.7 bits (122), Expect = 1e-07
Identities = 11/81 (13%), Positives = 24/81 (29%), Gaps = 2/81 (2%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
T + SP G ++ A + + + V F +L
Sbjct: 251 TELYFTGLRSPKDPNQIYGVLNRLAK-YDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYL 308
Query: 615 SSADRTVRVWDTENVRKLTFI 635
+ V++ + + K+ I
Sbjct: 309 GGTFNDLAVFNPDTLEKVKNI 329
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 49.4 bits (116), Expect = 6e-07
Identities = 5/68 (7%), Positives = 15/68 (22%), Gaps = 2/68 (2%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRL-ATSSADRT 620
+ + + + S TV + +P ++
Sbjct: 4 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63
Query: 621 VRVWDTEN 628
+ D +
Sbjct: 64 IYGIDLDT 71
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 38.2 bits (87), Expect = 0.003
Identities = 5/37 (13%), Positives = 11/37 (29%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE 594
F G L GG ++ ++ ++
Sbjct: 294 YYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 330
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 51.7 bits (122), Expect = 1e-07
Identities = 15/94 (15%), Positives = 30/94 (31%), Gaps = 3/94 (3%)
Query: 537 AEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH 596
AE G+ +Q + + + V+ ++ + E
Sbjct: 240 AERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-M 298
Query: 597 TQWITDVRFSPSLSRL--ATSSADRTVRVWDTEN 628
I + S L A S+ D+T+ + D E+
Sbjct: 299 GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAES 332
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 41.3 bits (95), Expect = 2e-04
Identities = 23/221 (10%), Positives = 43/221 (19%), Gaps = 19/221 (8%)
Query: 406 MTMDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPSTHTP 465
+ D G P +
Sbjct: 135 DLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDE 194
Query: 466 GDVISRPTLQHNG----------------ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFV 509
+ Q G +S + + + + A + V
Sbjct: 195 FLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQV 254
Query: 510 DDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK- 568
D + + D R V T ++S + S D K
Sbjct: 255 AYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHE-IDSINVSQDEKP 313
Query: 569 -LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS 608
L A DK + ES ++ + + +
Sbjct: 314 LLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADM 354
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 48.6 bits (114), Expect = 1e-06
Identities = 9/75 (12%), Positives = 17/75 (22%), Gaps = 3/75 (4%)
Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620
+P + E + V S S + A
Sbjct: 246 TAVNPAKTRAFG--AYNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGD 302
Query: 621 VRVWDTENVRKLTFI 635
+ +D E + K +
Sbjct: 303 LAAYDAETLEKKGQV 317
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 42.9 bits (99), Expect = 8e-05
Identities = 12/90 (13%), Positives = 23/90 (25%), Gaps = 3/90 (3%)
Query: 568 KLLATGGHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSPSLSRL-ATSSADRTVRVW 624
+ K V+ TE V + + +P AT + ++
Sbjct: 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61
Query: 625 DTENVRKLTFICCYKCIFVSTAIGSCFFAP 654
D L I ++ +P
Sbjct: 62 DLVTGETLGRIDLSTPEERVKSLFGAALSP 91
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 38.6 bits (88), Expect = 0.002
Identities = 11/68 (16%), Positives = 21/68 (30%), Gaps = 1/68 (1%)
Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
+ +P S S + S DG + GG + E+ K ++ +
Sbjct: 269 KNASIKRVPLPHS-YYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSL 327
Query: 604 RFSPSLSR 611
+R
Sbjct: 328 ASVRLFTR 335
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 38.2 bits (87), Expect = 0.003
Identities = 11/82 (13%), Positives = 22/82 (26%), Gaps = 6/82 (7%)
Query: 551 IPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQW-----ITDVR 604
I + +P G+ AT + V + ++ T +
Sbjct: 29 IADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAA 88
Query: 605 FSPSLSRLATSSADRTVRVWDT 626
SP LA + + +
Sbjct: 89 LSPDGKTLAIYESPVRLELTHF 110
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.2 bits (105), Expect = 1e-05
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Query: 588 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627
+ + H I V S + S D ++VWD +
Sbjct: 5 ATANAGKAHDADIFSVSACNSF--TVSCSGDGYLKVWDNK 42
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.2 bits (105), Expect = 1e-05
Identities = 17/76 (22%), Positives = 26/76 (34%), Gaps = 5/76 (6%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWI----TDVRFSPSLS 610
+S V S F+ G+ L + G D K W ++ +TL H I +
Sbjct: 289 SSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGD 348
Query: 611 RLATSSADRTVRVWDT 626
LA V+
Sbjct: 349 SLAEPGVFD-VKFLKK 363
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.2 bits (105), Expect = 2e-05
Identities = 9/87 (10%), Positives = 25/87 (28%), Gaps = 15/87 (17%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE------HTQWITDVRFSPS 608
+ + S + D +W + ++ ++ H + V +
Sbjct: 14 DADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQA 71
Query: 609 LSR-------LATSSADRTVRVWDTEN 628
+ R +AT+S + +
Sbjct: 72 IERDAFELCLVATTSFSGDLLFYRITR 98
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 44.0 bits (103), Expect = 4e-05
Identities = 13/77 (16%), Positives = 18/77 (23%), Gaps = 6/77 (7%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-----EHTQWITDVRFSPSLSRL 612
V S G+ L G D K + + E E T
Sbjct: 64 VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYA 123
Query: 613 -ATSSADRTVRVWDTEN 628
A + + D E
Sbjct: 124 IAGAYWPPQYVIMDGET 140
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 40.2 bits (93), Expect = 7e-04
Identities = 12/68 (17%), Positives = 21/68 (30%), Gaps = 3/68 (4%)
Query: 563 FSPDGK--LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620
D + T + L ++ +K+ L+ + R S S L D
Sbjct: 26 NDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGK 84
Query: 621 VRVWDTEN 628
V + D
Sbjct: 85 VNMIDLWM 92
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 42.2 bits (98), Expect = 1e-04
Identities = 11/98 (11%), Positives = 21/98 (21%), Gaps = 6/98 (6%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-----EHTQWITDVRFSPSLSRL 612
V S G+ L G D + + + E E +
Sbjct: 64 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYT 123
Query: 613 -ATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGS 649
A + + D E + + +
Sbjct: 124 IAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHP 161
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 38.4 bits (88), Expect = 0.002
Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 10/81 (12%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA---- 613
V S DG + G K ++ + L+ ++ P S L
Sbjct: 267 VWSTSHLGDGSISLIGTDPKN---HPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTT 323
Query: 614 ---TSSADRTVRVWDTENVRK 631
+ ++V V+D +N+
Sbjct: 324 FNPDARISQSVAVFDLKNLDA 344
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 40.6 bits (93), Expect = 4e-04
Identities = 8/48 (16%), Positives = 16/48 (33%), Gaps = 2/48 (4%)
Query: 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTEN 628
T + + + + + +P ++ S TV V DT
Sbjct: 229 IDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFCNTVSVIDTAT 275
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 37.5 bits (85), Expect = 0.004
Identities = 8/72 (11%), Positives = 20/72 (27%), Gaps = 2/72 (2%)
Query: 572 TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENVR 630
+ S V +T+ + SP +++ ++ V + DT
Sbjct: 7 ANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNN 65
Query: 631 KLTFICCYKCIF 642
+ +
Sbjct: 66 VIATVPAGSSPQ 77
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 655 | |||
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.81 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.78 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.78 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.75 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.74 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.72 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.71 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.71 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.71 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.68 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.67 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.66 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.65 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.65 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.63 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.63 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.61 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.58 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.58 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.56 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.55 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.55 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.51 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.5 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.5 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.49 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.46 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.45 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.45 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.38 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.34 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.31 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.15 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.06 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.03 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.03 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 98.97 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 98.92 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 98.92 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 98.9 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 98.84 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 98.71 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 98.6 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.58 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.5 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 98.45 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.43 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.29 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 97.94 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 97.77 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 97.35 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 96.95 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 96.81 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 96.8 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 96.66 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 96.61 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 96.59 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 96.44 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 96.29 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 95.61 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 95.55 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 95.47 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 95.29 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 94.9 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 94.81 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 94.78 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 94.7 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 94.61 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 94.49 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 93.98 | |
| d1uuja_ | 76 | Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-te | 92.33 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 91.84 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 90.82 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 88.98 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 86.3 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 83.47 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 82.7 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 80.59 |
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.81 E-value=9e-20 Score=191.39 Aligned_cols=124 Identities=20% Similarity=0.297 Sum_probs=104.5
Q ss_pred cEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCc---EEEEe
Q 006229 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKK---AVLWC 583 (655)
Q Consensus 507 ~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~Dgt---VrIWD 583 (655)
.+|++|+.|++|++|+...+. ....+.....+.+|...|.+|+|+|||++|++|+.|++ |+|||
T Consensus 196 g~lasgs~Dg~i~iwd~~~~~-------------~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd 262 (393)
T d1sq9a_ 196 GLIATGFNNGTVQISELSTLR-------------PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYE 262 (393)
T ss_dssp SEEEEECTTSEEEEEETTTTE-------------EEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEE
T ss_pred CEEEEEeCCCcEEEEeecccc-------------cccccccccccccccceEEEcccccccceeeeecCCCCcceeeecc
Confidence 388999999999999765441 01122344566789999999999999999999999975 89999
Q ss_pred CCCCeEEEEec-------------ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceee
Q 006229 584 TESFTVKSTLE-------------EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFV 643 (655)
Q Consensus 584 l~t~~~l~tl~-------------gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~ 643 (655)
+.+++++.++. ||...|++|+|+|++++|+|||.|++|||||+++++++.++.+|...+.
T Consensus 263 ~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~ 335 (393)
T d1sq9a_ 263 TEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIE 335 (393)
T ss_dssp TTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCS
T ss_pred cccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCccc
Confidence 99998888774 7999999999999999999999999999999999999999999876553
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.78 E-value=6.6e-18 Score=168.18 Aligned_cols=179 Identities=18% Similarity=0.180 Sum_probs=140.5
Q ss_pred CCCCceeccCCCCceEEEEecCCCCcc--------cccCcccCCCCcEEEeccCCCcEEEEecCCCCC------------
Q 006229 469 ISRPTLQHNGASSKSLLMFGSDGMGSL--------TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDAD------------ 528 (655)
Q Consensus 469 ~s~~~~~~s~S~d~s~l~ws~dg~~~l--------asss~~l~~~~~~LasGS~D~tV~vW~s~d~~d------------ 528 (655)
.++...+++++.|+.+.+|+......+ .+....+.+.+.++++|+.|+.|++|.......
T Consensus 64 s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~ 143 (340)
T d1tbga_ 64 GTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHT 143 (340)
T ss_dssp CTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCS
T ss_pred CCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccccccccccccceeccccc
Confidence 345568889999999999998753211 223335677778999999999999986443320
Q ss_pred -----------------------------------------------------------CCCccccccccCCCceeeeEE
Q 006229 529 -----------------------------------------------------------PRDRVGRSAEVGKGFTFTEFQ 549 (655)
Q Consensus 529 -----------------------------------------------------------~~d~~~~l~d~~~~~t~~~v~ 549 (655)
..+..+++|+..++ .++.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~---~~~~ 220 (340)
T d1tbga_ 144 GYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG---MCRQ 220 (340)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTT---EEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCC---cEEE
Confidence 00112244444433 5667
Q ss_pred eecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe--cccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 006229 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (655)
Q Consensus 550 ~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl--~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~ 627 (655)
.+.+|...|++|+|+|++++|++|+.|++|++||++....+..+ ..|...|++++|+|++++|++|+.||+|+|||+.
T Consensus 221 ~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~ 300 (340)
T d1tbga_ 221 TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETT
T ss_pred EEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECC
Confidence 78899999999999999999999999999999999999887766 4677889999999999999999999999999999
Q ss_pred CCeEEEEEecccceeeeeceeeEEEecC
Q 006229 628 NVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 628 tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
+++++.++.+|... |.+++|+|+
T Consensus 301 ~~~~~~~~~~H~~~-----V~~l~~s~d 323 (340)
T d1tbga_ 301 KADRAGVLAGHDNR-----VSCLGVTDD 323 (340)
T ss_dssp TCCEEEEECCCSSC-----EEEEEECTT
T ss_pred CCcEEEEEcCCCCC-----EEEEEEeCC
Confidence 99999999988654 557788875
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.78 E-value=4.6e-18 Score=173.92 Aligned_cols=172 Identities=19% Similarity=0.284 Sum_probs=130.2
Q ss_pred CceEEEEecCCCC--------cccccCcccCCCCcEEEeccCCCcEEEEecCCCCCC-----------------------
Q 006229 481 SKSLLMFGSDGMG--------SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADP----------------------- 529 (655)
Q Consensus 481 d~s~l~ws~dg~~--------~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~----------------------- 529 (655)
...+++|+.+... .-.+....+.+.+++|++|+.|++|++|+.......
T Consensus 37 ~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~ 116 (311)
T d1nr0a1 37 GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKR 116 (311)
T ss_dssp TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCE
T ss_pred CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccccccccccccc
Confidence 3456667665421 112233356677789999999999999977665310
Q ss_pred -------CCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeEEEEecccCCCEE
Q 006229 530 -------RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWIT 601 (655)
Q Consensus 530 -------~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~-lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~It 601 (655)
.+..+++|+...+ ..+..+.+|...|.+|+|+|++. +|++|+.|++|++||+++++++..+.+|+..|+
T Consensus 117 l~~~~~~~~~~~~v~~~~~~---~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~ 193 (311)
T d1nr0a1 117 IAAVGEGRERFGHVFLFDTG---TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVH 193 (311)
T ss_dssp EEEEECCSSCSEEEEETTTC---CBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEE
T ss_pred cccccccccccccccccccc---cccccccccccccccccccccceeeeccccccccccccccccccccccccccccccc
Confidence 1111233333322 45567788999999999999988 588999999999999999999999999999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccce--eeeeceeeEEEecC
Q 006229 602 DVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCI--FVSTAIGSCFFAPT 655 (655)
Q Consensus 602 sVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~--v~s~~Vss~~F~P~ 655 (655)
+|+|+|++++|++++.|+.|+|||++++..+..+...... .+...|.+++|+|+
T Consensus 194 ~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~ 249 (311)
T d1nr0a1 194 SVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPD 249 (311)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTT
T ss_pred ccccCccccccccccccccccccccccccccccccccccccccccccccccccCCC
Confidence 9999999999999999999999999999988887654322 23455778899885
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.75 E-value=4.2e-17 Score=166.67 Aligned_cols=169 Identities=18% Similarity=0.217 Sum_probs=127.7
Q ss_pred CCCCceeccCCCCceEEEEecCCCCcc----------cccCcccCCCCcEEEeccC--CCcEEEEecCCCCC--------
Q 006229 469 ISRPTLQHNGASSKSLLMFGSDGMGSL----------TSAPNQLTDMDRFVDDGSL--DDNVESFLSPDDAD-------- 528 (655)
Q Consensus 469 ~s~~~~~~s~S~d~s~l~ws~dg~~~l----------asss~~l~~~~~~LasGS~--D~tV~vW~s~d~~d-------- 528 (655)
.++...+++++.++.+.+|+....... .+....+.+.+.++++++. |..+++|+...+..
T Consensus 67 sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~ 146 (311)
T d1nr0a1 67 SPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQA 146 (311)
T ss_dssp CTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCS
T ss_pred eCCCCeEeccccCceEeeeeeeccccccccccccccCccccccccccccccccccccccccccccccccccccccccccc
Confidence 345567778888888888887663221 1112244555667776665 45578886554330
Q ss_pred -------------------CCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE
Q 006229 529 -------------------PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV 589 (655)
Q Consensus 529 -------------------~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~ 589 (655)
..+..+++|+..+ .+....+.+|...|+++.|+|++++|++|+.|+.|+|||+.+++.
T Consensus 147 ~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~---~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~ 223 (311)
T d1nr0a1 147 RAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP---FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTK 223 (311)
T ss_dssp SCEEEEEECSSSSCEEEEEETTSCEEEEETTT---BEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred cccccccccccceeeecccccccccccccccc---cccccccccccccccccccCccccccccccccccccccccccccc
Confidence 0122234444443 356777889999999999999999999999999999999999888
Q ss_pred EEEec-------ccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccc
Q 006229 590 KSTLE-------EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKC 640 (655)
Q Consensus 590 l~tl~-------gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~ 640 (655)
+..+. +|...|++|+|+|++++|+||+.|++|+|||+++++++.++..+..
T Consensus 224 ~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~ 281 (311)
T d1nr0a1 224 TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTR 281 (311)
T ss_dssp EEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred cccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCC
Confidence 87764 6899999999999999999999999999999999999999877643
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.74 E-value=1.8e-17 Score=172.16 Aligned_cols=181 Identities=16% Similarity=0.111 Sum_probs=135.0
Q ss_pred CCCceeccCCCCceEEEEecCCCC----------cccccCcccCCCCcEEEeccCCCcEEEEecCCCC------------
Q 006229 470 SRPTLQHNGASSKSLLMFGSDGMG----------SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDA------------ 527 (655)
Q Consensus 470 s~~~~~~s~S~d~s~l~ws~dg~~----------~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~------------ 527 (655)
++...+++++.++.+.+|+.++.. .-.+....+.+.+.+|++|+.|++|++|+..+..
T Consensus 17 ~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~ 96 (371)
T d1k8kc_ 17 KDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINR 96 (371)
T ss_dssp TTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSS
T ss_pred CCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccccccccccc
Confidence 445567777788888889876521 1122333556677889999999999999654332
Q ss_pred ----------------CCCCccccccccCCCcee-eeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC----
Q 006229 528 ----------------DPRDRVGRSAEVGKGFTF-TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES---- 586 (655)
Q Consensus 528 ----------------d~~d~~~~l~d~~~~~t~-~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t---- 586 (655)
...+..+++|+....... ........|...|.|++|+|++++|++|+.|++|+|||+..
T Consensus 97 ~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~ 176 (371)
T d1k8kc_ 97 AARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVE 176 (371)
T ss_dssp CEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTS
T ss_pred cccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEEEeeccCccc
Confidence 011223345444433222 23445667999999999999999999999999999999753
Q ss_pred --------------CeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEE
Q 006229 587 --------------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFF 652 (655)
Q Consensus 587 --------------~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F 652 (655)
+..+....+|...|++|+|+|++.+|++++.|++|+|||+.++.++..+..|... |.+++|
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-----v~s~~f 251 (371)
T d1k8kc_ 177 ERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLP-----LLAVTF 251 (371)
T ss_dssp CCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCC-----EEEEEE
T ss_pred cccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeeccccc-----ceeeee
Confidence 3466777899999999999999999999999999999999999999999887654 446677
Q ss_pred ecC
Q 006229 653 APT 655 (655)
Q Consensus 653 ~P~ 655 (655)
+|+
T Consensus 252 s~d 254 (371)
T d1k8kc_ 252 ITE 254 (371)
T ss_dssp EET
T ss_pred cCC
Confidence 664
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.72 E-value=4.7e-17 Score=169.05 Aligned_cols=143 Identities=15% Similarity=0.215 Sum_probs=113.1
Q ss_pred CCceEEEEecCCCCcccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCee
Q 006229 480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE 559 (655)
Q Consensus 480 ~d~s~l~ws~dg~~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~ 559 (655)
.+.+++.|++++. +|++|+.|+.|++|+...+ .+..+..+++|.+.|.
T Consensus 8 ~pIt~~~~s~dg~---------------~la~~~~~~~i~iw~~~~~-----------------~~~~~~~l~gH~~~V~ 55 (371)
T d1k8kc_ 8 EPISCHAWNKDRT---------------QIAICPNNHEVHIYEKSGN-----------------KWVQVHELKEHNGQVT 55 (371)
T ss_dssp SCCCEEEECTTSS---------------EEEEECSSSEEEEEEEETT-----------------EEEEEEEEECCSSCEE
T ss_pred CCeEEEEECCCCC---------------EEEEEeCCCEEEEEECCCC-----------------CEEEEEEecCCCCCEE
Confidence 3567888888765 7889999999999954332 2456778899999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCeE--EEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEec
Q 006229 560 SCHFSPDGKLLATGGHDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICC 637 (655)
Q Consensus 560 sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~--l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~ 637 (655)
+|+|+|++++|++|+.|++|+|||+.++.. ...+.+|...|++++|+|++++|++|+.|++|++|++........+..
T Consensus 56 ~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~ 135 (371)
T d1k8kc_ 56 GVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKH 135 (371)
T ss_dssp EEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEE
T ss_pred EEEECCCCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcceeeeeecccccccccc
Confidence 999999999999999999999999987654 445678999999999999999999999999999999876554332221
Q ss_pred ccceeeeeceeeEEEecC
Q 006229 638 YKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 638 ~~~~v~s~~Vss~~F~P~ 655 (655)
... .+...|.+++|+|+
T Consensus 136 ~~~-~~~~~v~~v~~~p~ 152 (371)
T d1k8kc_ 136 IKK-PIRSTVLSLDWHPN 152 (371)
T ss_dssp ECT-TCCSCEEEEEECTT
T ss_pred ccc-cccccccccccccc
Confidence 111 12234567888885
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.71 E-value=1.6e-16 Score=154.84 Aligned_cols=160 Identities=19% Similarity=0.273 Sum_probs=127.8
Q ss_pred CceeccCCCCceEEEEecCCCCcc--------cccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCc
Q 006229 472 PTLQHNGASSKSLLMFGSDGMGSL--------TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGF 543 (655)
Q Consensus 472 ~~~~~s~S~d~s~l~ws~dg~~~l--------asss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~ 543 (655)
...+.+++.+..+.+|+....... ......+...+.+|++|+.|+.|++|+....
T Consensus 113 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~----------------- 175 (317)
T d1vyhc1 113 GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK----------------- 175 (317)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-----------------
T ss_pred CceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccc-----------------
Confidence 345566677888888887642211 1122244566788999999999999966544
Q ss_pred eeeeEEeecCCCCCeeEEEEcCC--------------------CCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEE
Q 006229 544 TFTEFQLIPASTSKVESCHFSPD--------------------GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603 (655)
Q Consensus 544 t~~~v~~l~gH~~~V~sl~fSpd--------------------G~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsV 603 (655)
..+..+.+|...|.++.|+++ +.++++|+.|++|++||+++++++.++.+|...|+++
T Consensus 176 --~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~ 253 (317)
T d1vyhc1 176 --ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGV 253 (317)
T ss_dssp --CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEE
T ss_pred --eeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEE
Confidence 345566677777777777764 4579999999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 604 RFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 604 afsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
+|+|++++|++|+.||+|+|||+++++++.++.+|... |.+++|+|+
T Consensus 254 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~-----V~~~~~s~~ 300 (317)
T d1vyhc1 254 LFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHF-----VTSLDFHKT 300 (317)
T ss_dssp EECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSC-----EEEEEECSS
T ss_pred EECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCC-----EEEEEEcCC
Confidence 99999999999999999999999999999999988654 457788875
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.71 E-value=8.8e-17 Score=159.88 Aligned_cols=136 Identities=18% Similarity=0.154 Sum_probs=108.7
Q ss_pred ceeccCCCCceEEEEecCCCCc--------ccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCce
Q 006229 473 TLQHNGASSKSLLMFGSDGMGS--------LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFT 544 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~~--------lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t 544 (655)
....++..+..+.+|+...... -.+....+.+.+.++++|+.|+.|++|+.....
T Consensus 197 ~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~----------------- 259 (340)
T d1tbga_ 197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ----------------- 259 (340)
T ss_dssp SEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----------------
T ss_pred ceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccc-----------------
Confidence 4555666778888887654211 112223456677899999999999999654431
Q ss_pred eeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 006229 545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (655)
Q Consensus 545 ~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVW 624 (655)
.........|...|.+++|+|++++|++|+.|++|+|||+.+++++.++.+|...|++|+|+|++.+|+|||.||+|+||
T Consensus 260 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iW 339 (340)
T d1tbga_ 260 ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339 (340)
T ss_dssp EEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred cccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEe
Confidence 11122334667789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred E
Q 006229 625 D 625 (655)
Q Consensus 625 D 625 (655)
|
T Consensus 340 d 340 (340)
T d1tbga_ 340 N 340 (340)
T ss_dssp C
T ss_pred C
Confidence 7
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.71 E-value=1e-16 Score=164.27 Aligned_cols=185 Identities=18% Similarity=0.238 Sum_probs=128.0
Q ss_pred CCceeccCCCCceEEEEecCCCCcc--------cccCcccCCCCcEEEeccCCCcEEEEecCCCC---------------
Q 006229 471 RPTLQHNGASSKSLLMFGSDGMGSL--------TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDA--------------- 527 (655)
Q Consensus 471 ~~~~~~s~S~d~s~l~ws~dg~~~l--------asss~~l~~~~~~LasGS~D~tV~vW~s~d~~--------------- 527 (655)
+...+.+++.++.+.+|+......+ .+....+......+++|+.|+.|++|+.....
T Consensus 132 ~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 211 (388)
T d1erja_ 132 DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVA 211 (388)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEE
T ss_pred CCCcceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeecccccccccccccccccccc
Confidence 3456667777777777776542211 11122334455667777778888777554332
Q ss_pred -----------CCCCccccccccCCCceeee----EEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC-----
Q 006229 528 -----------DPRDRVGRSAEVGKGFTFTE----FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF----- 587 (655)
Q Consensus 528 -----------d~~d~~~~l~d~~~~~t~~~----v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~----- 587 (655)
...+..+.+|+...+..... .....+|.+.|.+++|+|++++|++|+.|++|++||++++
T Consensus 212 ~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 291 (388)
T d1erja_ 212 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSD 291 (388)
T ss_dssp ECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--------
T ss_pred ccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccc
Confidence 11233445555554433222 2334578999999999999999999999999999998754
Q ss_pred -------eEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeecee-eEEEecC
Q 006229 588 -------TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIG-SCFFAPT 655 (655)
Q Consensus 588 -------~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vs-s~~F~P~ 655 (655)
.+......|...|++++|+|++.+|++|+.||+|+|||+++++++.++.+|...+.++.+. .+.|+|+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd 367 (388)
T d1erja_ 292 SKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPE 367 (388)
T ss_dssp -------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTT
T ss_pred cccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCC
Confidence 3455667899999999999999999999999999999999999999999998776655432 3345553
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=8.5e-16 Score=156.76 Aligned_cols=175 Identities=14% Similarity=0.150 Sum_probs=133.2
Q ss_pred CCCceeccCCCCceEEEEecCCCCc----------ccccCcccCCCCcEEEeccCCCcEEEEecCCCC------------
Q 006229 470 SRPTLQHNGASSKSLLMFGSDGMGS----------LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDA------------ 527 (655)
Q Consensus 470 s~~~~~~s~S~d~s~l~ws~dg~~~----------lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~------------ 527 (655)
++...+++++.++.+.+|+...... ..+....+.+.+.++++++.|+.|++|+..+..
T Consensus 107 ~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v 186 (337)
T d1gxra_ 107 PDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGA 186 (337)
T ss_dssp TTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred CCCCEEEEeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3456778888899999998765321 111222456677889999999999999766543
Q ss_pred --------------CCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe
Q 006229 528 --------------DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL 593 (655)
Q Consensus 528 --------------d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl 593 (655)
...+..+++|+..++ +.+.. ..|...|.+++|+|++++|++|+.|+.|++||++++... ..
T Consensus 187 ~~l~~s~~~~~~~~~~~d~~v~i~d~~~~---~~~~~-~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~ 261 (337)
T d1gxra_ 187 SCIDISNDGTKLWTGGLDNTVRSWDLREG---RQLQQ-HDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QL 261 (337)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTT---EEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EE
T ss_pred ccccccccccccccccccccccccccccc---eeecc-cccccceEEEEEcccccccceeccccccccccccccccc-cc
Confidence 011233455555544 23333 357889999999999999999999999999999988776 55
Q ss_pred cccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 594 EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 594 ~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
..|...|++|+|+|++++|+||+.|++|+|||+.+++++..+... ..|.+++|+|+
T Consensus 262 ~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~------~~v~~~~~s~d 317 (337)
T d1gxra_ 262 HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES------SSVLSCDISVD 317 (337)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS------SCEEEEEECTT
T ss_pred cccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEccCC------CCEEEEEEeCC
Confidence 679999999999999999999999999999999999998876543 23567888875
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.67 E-value=1.8e-16 Score=162.41 Aligned_cols=148 Identities=18% Similarity=0.201 Sum_probs=111.0
Q ss_pred ceeccCCCCceEEEEecCCCCcc---------------cccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCcccccc
Q 006229 473 TLQHNGASSKSLLMFGSDGMGSL---------------TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSA 537 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~~l---------------asss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~ 537 (655)
..+.+++.++.+.+|+....... .+....+.+.+.+|++|+.|++|++|+........
T Consensus 218 ~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~------- 290 (388)
T d1erja_ 218 KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKS------- 290 (388)
T ss_dssp CEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--------------
T ss_pred CeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcccc-------
Confidence 46666777788888877542111 12223455667899999999999999776553111
Q ss_pred ccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEE------cCCCCE
Q 006229 538 EVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF------SPSLSR 611 (655)
Q Consensus 538 d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVaf------sPdg~~ 611 (655)
................|...|.+++|+|++++|++|+.|++|+|||+++++++.++.+|.+.|++|++ +|++.+
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~ 370 (388)
T d1erja_ 291 DSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNV 370 (388)
T ss_dssp --------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEE
T ss_pred ccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCE
Confidence 11111122455667789999999999999999999999999999999999999999999999999985 568999
Q ss_pred EEEEeCCCcEEEEECC
Q 006229 612 LATSSADRTVRVWDTE 627 (655)
Q Consensus 612 LaSgS~DgtVrVWDl~ 627 (655)
|||||.||+|+|||++
T Consensus 371 l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 371 FATGSGDCKARIWKYK 386 (388)
T ss_dssp EEEEETTSEEEEEEEE
T ss_pred EEEEeCCCEEEEEeee
Confidence 9999999999999985
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.66 E-value=2.9e-15 Score=145.72 Aligned_cols=153 Identities=18% Similarity=0.225 Sum_probs=118.9
Q ss_pred CCCceEEEEecCCCCcccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCC--------------------------c
Q 006229 479 ASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRD--------------------------R 532 (655)
Q Consensus 479 S~d~s~l~ws~dg~~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d--------------------------~ 532 (655)
.....++.|++++ .+|++|+.|++|++|+..++..... .
T Consensus 17 ~~~I~~l~~sp~~---------------~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~ 81 (317)
T d1vyhc1 17 RSPVTRVIFHPVF---------------SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADM 81 (317)
T ss_dssp SSCEEEEEECSSS---------------SEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCCeEEEEEcCCC---------------CEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccc
Confidence 3455666666644 3788888999999997765431100 0
Q ss_pred cccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEE
Q 006229 533 VGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL 612 (655)
Q Consensus 533 ~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~L 612 (655)
....++ .........+.+|...+.++.|++++..|++++.|+.+++||+++++.+.++.+|...+.+++|+|++.+|
T Consensus 82 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 158 (317)
T d1vyhc1 82 TIKLWD---FQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLI 158 (317)
T ss_dssp CCCEEE---TTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEE
T ss_pred cccccc---ccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEE
Confidence 001111 11223455667889999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEec
Q 006229 613 ATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAP 654 (655)
Q Consensus 613 aSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P 654 (655)
++++.|+.|++||+.++.++..+..+...+. .+.|+|
T Consensus 159 ~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~-----~~~~~~ 195 (317)
T d1vyhc1 159 ASCSNDQTVRVWVVATKECKAELREHRHVVE-----CISWAP 195 (317)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCCSSCEE-----EEEECC
T ss_pred EEEeCCCeEEEEeeccceeeEEEecCCCCce-----EEEEee
Confidence 9999999999999999999998887765443 455554
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=4.1e-15 Score=151.61 Aligned_cols=163 Identities=18% Similarity=0.140 Sum_probs=131.3
Q ss_pred CCCCceeccCCCCceEEEEecCCCCc-------------ccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCcccc
Q 006229 469 ISRPTLQHNGASSKSLLMFGSDGMGS-------------LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGR 535 (655)
Q Consensus 469 ~s~~~~~~s~S~d~s~l~ws~dg~~~-------------lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~ 535 (655)
.++...+++++ ++.+.+|+...... -.+....+.+.+.+|++|+.|++|++|+....
T Consensus 60 s~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~--------- 129 (337)
T d1gxra_ 60 SNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAP--------- 129 (337)
T ss_dssp CSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC---------
T ss_pred CCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccccc---------
Confidence 44556777776 67899998754211 01233456777789999999999999965432
Q ss_pred ccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEE
Q 006229 536 SAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS 615 (655)
Q Consensus 536 l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSg 615 (655)
.......+..|...|.+++|+|++.+|++++.|+.|++||+.++++.....+|...|++|+|++++.++++|
T Consensus 130 --------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~ 201 (337)
T d1gxra_ 130 --------TPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTG 201 (337)
T ss_dssp ----------EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred --------cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 124556778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 616 SADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 616 S~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
+.|++|++||+++++.+..+.... .|.+++|+|+
T Consensus 202 ~~d~~v~i~d~~~~~~~~~~~~~~------~i~~l~~~~~ 235 (337)
T d1gxra_ 202 GLDNTVRSWDLREGRQLQQHDFTS------QIFSLGYCPT 235 (337)
T ss_dssp ETTSEEEEEETTTTEEEEEEECSS------CEEEEEECTT
T ss_pred cccccccccccccceeeccccccc------ceEEEEEccc
Confidence 999999999999999888775432 3456777764
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.65 E-value=1.3e-15 Score=155.60 Aligned_cols=108 Identities=22% Similarity=0.166 Sum_probs=88.5
Q ss_pred ccccccCCCceeeeEEeecCCCCCeeEEEEcCC-CCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEc---CCC
Q 006229 534 GRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS---PSL 609 (655)
Q Consensus 534 ~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpd-G~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafs---Pdg 609 (655)
+++|+.........+....+|...|.+|+|+|| +.+|++|+.|++|+|||+++++++.++.+|...|.++.|+ |++
T Consensus 184 v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg 263 (325)
T d1pgua1 184 VVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDS 263 (325)
T ss_dssp EEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSS
T ss_pred cccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCC
Confidence 344444443333334445678888999999996 6899999999999999999999999999999887766666 689
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEEecccce
Q 006229 610 SRLATSSADRTVRVWDTENVRKLTFICCYKCI 641 (655)
Q Consensus 610 ~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~ 641 (655)
.+|+|++.|++|+|||+++++++..+..+...
T Consensus 264 ~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~ 295 (325)
T d1pgua1 264 QKFATVGADATIRVWDVTTSKCVQKWTLDKQQ 295 (325)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEECCTTC
T ss_pred CEEEEEeCCCeEEEEECCCCCEEEEEEecCCc
Confidence 99999999999999999999999988776543
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.63 E-value=5.1e-15 Score=151.08 Aligned_cols=136 Identities=18% Similarity=0.248 Sum_probs=106.7
Q ss_pred CCcEEEeccCCCcEEEEecCCCCC------------------------------------CCCccccccccCCCceeeeE
Q 006229 505 MDRFVDDGSLDDNVESFLSPDDAD------------------------------------PRDRVGRSAEVGKGFTFTEF 548 (655)
Q Consensus 505 ~~~~LasGS~D~tV~vW~s~d~~d------------------------------------~~d~~~~l~d~~~~~t~~~v 548 (655)
.+.+|++|+.|++|++|+...+.. ..+....+|+... ..++
T Consensus 76 ~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~---~~~~ 152 (325)
T d1pgua1 76 GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS---GNSL 152 (325)
T ss_dssp TCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTT---CCEE
T ss_pred CCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecc---cccc
Confidence 347899999999999996543220 0111122333322 2567
Q ss_pred EeecCCCCCeeEEEEcCCCC-EEEEEeCCCcEEEEeCCCCeEEEEe---cccCCCEEEEEEcCC-CCEEEEEeCCCcEEE
Q 006229 549 QLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTL---EEHTQWITDVRFSPS-LSRLATSSADRTVRV 623 (655)
Q Consensus 549 ~~l~gH~~~V~sl~fSpdG~-lLaSgs~DgtVrIWDl~t~~~l~tl---~gH~~~ItsVafsPd-g~~LaSgS~DgtVrV 623 (655)
..+.+|...|.+|+|+|++. ++++++.|+.|++||+.+++....+ .+|...|++|+|+|+ +.+|++|+.|+.|+|
T Consensus 153 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~i 232 (325)
T d1pgua1 153 GEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISC 232 (325)
T ss_dssp EECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEE
T ss_pred eeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceee
Confidence 77889999999999999876 5788999999999999988876665 467888999999996 689999999999999
Q ss_pred EECCCCeEEEEEecccceee
Q 006229 624 WDTENVRKLTFICCYKCIFV 643 (655)
Q Consensus 624 WDl~tg~~v~~l~~~~~~v~ 643 (655)
||+++++++..+..|...+.
T Consensus 233 wd~~~~~~~~~l~~~~~~v~ 252 (325)
T d1pgua1 233 FDGKSGEFLKYIEDDQEPVQ 252 (325)
T ss_dssp EETTTCCEEEECCBTTBCCC
T ss_pred eeeccccccccccccccccc
Confidence 99999999999987766543
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.63 E-value=2.1e-15 Score=157.61 Aligned_cols=148 Identities=15% Similarity=0.056 Sum_probs=105.3
Q ss_pred CcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 006229 506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE 585 (655)
Q Consensus 506 ~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~ 585 (655)
..++++++.|++|++|+.......... ....................+...|.|++|+||+ +|++|+.|++|+|||+.
T Consensus 136 ~~~~~~~~~dg~i~vw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~ 213 (393)
T d1sq9a_ 136 SHRLVATDVKGTTYIWKFHPFADESNS-LTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELS 213 (393)
T ss_dssp CEEEEEEETTSCEEEEEEESSSSHHHH-TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETT
T ss_pred ccEEEEEcCCCcEEEEEeecCCcccce-eeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeec
Confidence 367888999999999965433210000 0000000000112233344566779999999998 89999999999999999
Q ss_pred CCeEEEEe------cccCCCEEEEEEcCCCCEEEEEeCCCc---EEEEECCCCeEEEEEecccce--------eeeecee
Q 006229 586 SFTVKSTL------EEHTQWITDVRFSPSLSRLATSSADRT---VRVWDTENVRKLTFICCYKCI--------FVSTAIG 648 (655)
Q Consensus 586 t~~~l~tl------~gH~~~ItsVafsPdg~~LaSgS~Dgt---VrVWDl~tg~~v~~l~~~~~~--------v~s~~Vs 648 (655)
+++++.++ .+|...|++|+|+|+|++|++||.|++ |+|||+.+++++..+...... .+...|.
T Consensus 214 ~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~ 293 (393)
T d1sq9a_ 214 TLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVM 293 (393)
T ss_dssp TTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEE
T ss_pred ccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCcee
Confidence 99887654 479999999999999999999999975 999999999999888632211 1334577
Q ss_pred eEEEecC
Q 006229 649 SCFFAPT 655 (655)
Q Consensus 649 s~~F~P~ 655 (655)
+++|+|+
T Consensus 294 ~l~fspd 300 (393)
T d1sq9a_ 294 SLSFNDS 300 (393)
T ss_dssp EEEECSS
T ss_pred eeccCCC
Confidence 8999985
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=6.7e-15 Score=145.10 Aligned_cols=159 Identities=18% Similarity=0.190 Sum_probs=118.6
Q ss_pred eeccCCCCceEEEEecCCCCccc------ccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeee
Q 006229 474 LQHNGASSKSLLMFGSDGMGSLT------SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTE 547 (655)
Q Consensus 474 ~~~s~S~d~s~l~ws~dg~~~la------sss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~ 547 (655)
....++.+..+.+|+......+. .....+...+.++++|+.|++|++|+.... +.
T Consensus 149 ~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~-------------------~~ 209 (342)
T d2ovrb2 149 RVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETG-------------------NC 209 (342)
T ss_dssp CEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTC-------------------CE
T ss_pred eeeeecCCCeEEEeecccceeeEEEcCcccccccccCCCCEEEEEeCCCeEEEeecccc-------------------ee
Confidence 34445556777777765421111 111122334578899999999999965544 46
Q ss_pred EEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecc---cCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 006229 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE---HTQWITDVRFSPSLSRLATSSADRTVRVW 624 (655)
Q Consensus 548 v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~g---H~~~ItsVafsPdg~~LaSgS~DgtVrVW 624 (655)
+..+.+|...|.++.|+ +++|++|+.|++|+|||+...+....+.+ |...+.++.|+ ++++++|+.||+|+||
T Consensus 210 ~~~~~~~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iw 285 (342)
T d2ovrb2 210 IHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLW 285 (342)
T ss_dssp EEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEE
T ss_pred eeEecccccceeEEecC--CCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEE
Confidence 67788999999998886 56999999999999999999888877764 56677777765 5799999999999999
Q ss_pred ECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 625 DTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 625 Dl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
|+++++++..+.......+...|.+++|+|+
T Consensus 286 d~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~ 316 (342)
T d2ovrb2 286 DLKTGEFIRNLVTLESGGSGGVVWRIRASNT 316 (342)
T ss_dssp ETTTCCEEEEEEECTTGGGTCEEEEEEECSS
T ss_pred ECCCCCEEEEEecccCCCCCCCEEEEEECCC
Confidence 9999999998865444344455778888885
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.58 E-value=1.6e-14 Score=141.65 Aligned_cols=77 Identities=9% Similarity=-0.025 Sum_probs=57.5
Q ss_pred cCCCCceEEEEecCCCCcccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCC
Q 006229 477 NGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS 556 (655)
Q Consensus 477 s~S~d~s~l~ws~dg~~~lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~ 556 (655)
.+....+.+.|+|++. +|++||.|++|++|+..... ....+....+|..
T Consensus 9 ~h~d~I~~l~fsp~~~---------------~L~s~s~Dg~v~iwd~~~~~----------------~~~~~~~~~~h~~ 57 (342)
T d1yfqa_ 9 APKDYISDIKIIPSKS---------------LLLITSWDGSLTVYKFDIQA----------------KNVDLLQSLRYKH 57 (342)
T ss_dssp CCSSCEEEEEEEGGGT---------------EEEEEETTSEEEEEEEETTT----------------TEEEEEEEEECSS
T ss_pred CCCCCEEEEEEeCCCC---------------EEEEEECCCeEEEEEccCCC----------------cceEEEEecCCCC
Confidence 3445567888888654 89999999999999654331 1123334447999
Q ss_pred CeeEEEEcCC-CCEEEEEeCCCcEEEEeC
Q 006229 557 KVESCHFSPD-GKLLATGGHDKKAVLWCT 584 (655)
Q Consensus 557 ~V~sl~fSpd-G~lLaSgs~DgtVrIWDl 584 (655)
.|.||+|+++ +.+|++|+.|++|++|++
T Consensus 58 ~V~~v~f~~~~~~~l~sg~~d~~v~~w~~ 86 (342)
T d1yfqa_ 58 PLLCCNFIDNTDLQIYVGTVQGEILKVDL 86 (342)
T ss_dssp CEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred CEEEEEEeCCCCCEEEEcccccceeeeec
Confidence 9999999986 558999999999999954
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.58 E-value=1.1e-14 Score=144.37 Aligned_cols=115 Identities=23% Similarity=0.350 Sum_probs=94.4
Q ss_pred ccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEE
Q 006229 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV 580 (655)
Q Consensus 501 ~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVr 580 (655)
.+.+.+.++++|+.|+.|++|+.... ....+ ....|...|++++|+|++++|++++.|+.|+
T Consensus 143 ~~s~~~~~l~~g~~dg~i~~~d~~~~-----------------~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 204 (299)
T d1nr0a2 143 ALSNDKQFVAVGGQDSKVHVYKLSGA-----------------SVSEV-KTIVHPAEITSVAFSNNGAFLVATDQSRKVI 204 (299)
T ss_dssp EECTTSCEEEEEETTSEEEEEEEETT-----------------EEEEE-EEEECSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred cccccccccccccccccccccccccc-----------------ccccc-ccccccccccccccccccccccccccccccc
Confidence 44566678999999999999965332 11111 2346889999999999999999999999999
Q ss_pred EEeCCCCeEE---EEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEE
Q 006229 581 LWCTESFTVK---STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLT 633 (655)
Q Consensus 581 IWDl~t~~~l---~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~ 633 (655)
+||+.++..+ ..+.+|...|++|+|+|++.+|++|+.|++|+|||++++....
T Consensus 205 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~ 260 (299)
T d1nr0a2 205 PYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHP 260 (299)
T ss_dssp EEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCC
T ss_pred cccccccccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcce
Confidence 9999876544 4567899999999999999999999999999999999876543
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.56 E-value=1.6e-14 Score=142.34 Aligned_cols=108 Identities=16% Similarity=0.344 Sum_probs=90.1
Q ss_pred cccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCC----------CCE
Q 006229 500 NQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD----------GKL 569 (655)
Q Consensus 500 ~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpd----------G~l 569 (655)
..+.+.+.+|++|+.|+.|++|+..+.. .....+.+|...|.+++|+|+ +.+
T Consensus 168 ~~~s~~~~~l~~g~~dg~i~i~d~~~~~------------------~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~ 229 (287)
T d1pgua2 168 ISISPSETYIAAGDVMGKILLYDLQSRE------------------VKTSRWAFRTSKINAISWKPAEKGANEEEIEEDL 229 (287)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTE------------------EEECCSCCCSSCEEEEEECCCC------CCSCCE
T ss_pred EEeccCccccccccccccccceeecccc------------------cccccccccccccceeeecccccccccccCCCCe
Confidence 3456667899999999999999765441 122345689999999999874 468
Q ss_pred EEEEeCCCcEEEEeCCC-CeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 006229 570 LATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT 626 (655)
Q Consensus 570 LaSgs~DgtVrIWDl~t-~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl 626 (655)
|++|+.|++|+|||+++ .+.+..+.+|...|++|+|+|++ .|+|+|.|++|||||+
T Consensus 230 l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 230 VATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp EEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred eEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence 99999999999999976 66788889999999999999975 6999999999999996
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.55 E-value=4.1e-14 Score=139.47 Aligned_cols=99 Identities=18% Similarity=0.236 Sum_probs=83.3
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEE-EecccCCCEEEEEEcCC----------CCEEEEEeCCCc
Q 006229 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPS----------LSRLATSSADRT 620 (655)
Q Consensus 552 ~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~-tl~gH~~~ItsVafsPd----------g~~LaSgS~Dgt 620 (655)
..|...|++|+|+|++.+|++|+.|+.|++||+.++..+. .+.+|...|++++|+|. +.+|+|||.|++
T Consensus 159 ~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~ 238 (287)
T d1pgua2 159 TPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTN 238 (287)
T ss_dssp SCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSC
T ss_pred eccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCe
Confidence 3577889999999999999999999999999999988765 46799999999999874 468999999999
Q ss_pred EEEEECCC-CeEEEEEecccceeeeeceeeEEEecC
Q 006229 621 VRVWDTEN-VRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 621 VrVWDl~t-g~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
|+|||+++ ++++..+.+|... |.+++|+|+
T Consensus 239 i~iw~~~~~~~~~~~~~~h~~~-----V~~v~~~~~ 269 (287)
T d1pgua2 239 IFIYSVKRPMKIIKALNAHKDG-----VNNLLWETP 269 (287)
T ss_dssp EEEEESSCTTCCEEETTSSTTC-----EEEEEEEET
T ss_pred EEEEECCCCCeEEEEeCCCCCC-----eEEEEECCC
Confidence 99999976 5566666667654 556777764
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.55 E-value=1.5e-14 Score=143.16 Aligned_cols=139 Identities=15% Similarity=0.280 Sum_probs=103.3
Q ss_pred CceeccCCCCceEEEEecCCCCcc---------cccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCC
Q 006229 472 PTLQHNGASSKSLLMFGSDGMGSL---------TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKG 542 (655)
Q Consensus 472 ~~~~~s~S~d~s~l~ws~dg~~~l---------asss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~ 542 (655)
...+..++.++.+.+|+..+.... .+....+.+.+.++++++.|+.|++|+..++
T Consensus 148 ~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~---------------- 211 (299)
T d1nr0a2 148 KQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANN---------------- 211 (299)
T ss_dssp SCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGT----------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----------------
Confidence 356667778888888887653211 1222345667789999999999999965443
Q ss_pred ceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE--EEEeccc-CCCEEEEEEcCCCCEEEEEeCCC
Q 006229 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV--KSTLEEH-TQWITDVRFSPSLSRLATSSADR 619 (655)
Q Consensus 543 ~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~--l~tl~gH-~~~ItsVafsPdg~~LaSgS~Dg 619 (655)
........+.+|...|++++|+|++++|++|+.|++|+|||++++.. +.....| ...|+++.| +++.+|+|||.|+
T Consensus 212 ~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~ 290 (299)
T d1nr0a2 212 FELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDS 290 (299)
T ss_dssp TEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTS
T ss_pred ccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCC
Confidence 12233455678999999999999999999999999999999987643 3333344 456777765 5678999999999
Q ss_pred cEEEEECC
Q 006229 620 TVRVWDTE 627 (655)
Q Consensus 620 tVrVWDl~ 627 (655)
+|||||+.
T Consensus 291 ~i~iWdl~ 298 (299)
T d1nr0a2 291 NIKFWNVP 298 (299)
T ss_dssp CEEEEECC
T ss_pred EEEEEecc
Confidence 99999983
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.51 E-value=9.1e-14 Score=137.56 Aligned_cols=90 Identities=20% Similarity=0.272 Sum_probs=78.8
Q ss_pred eEEeecCCCCCe-eEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 006229 547 EFQLIPASTSKV-ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (655)
Q Consensus 547 ~v~~l~gH~~~V-~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWD 625 (655)
+..+++||...| +|+.| ++++|+||+.|++|+|||+.+++++.++.+|++.|++|+|+|+ .+|+||+.|++|++|+
T Consensus 4 ~~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~ 80 (355)
T d1nexb2 4 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWD 80 (355)
T ss_dssp EEEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEE
T ss_pred CcEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccc
Confidence 356789999886 55555 6889999999999999999999999999999999999999985 5899999999999999
Q ss_pred CCCCeEEEEEeccc
Q 006229 626 TENVRKLTFICCYK 639 (655)
Q Consensus 626 l~tg~~v~~l~~~~ 639 (655)
+....+........
T Consensus 81 ~~~~~~~~~~~~~~ 94 (355)
T d1nexb2 81 IKKGCCTHVFEGHN 94 (355)
T ss_dssp TTTTEEEEEECCCS
T ss_pred cccccccccccccc
Confidence 99988876665443
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=8.4e-14 Score=137.08 Aligned_cols=138 Identities=17% Similarity=0.155 Sum_probs=105.0
Q ss_pred CceeccCCCCceEEEEecCCCCccc------ccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCcee
Q 006229 472 PTLQHNGASSKSLLMFGSDGMGSLT------SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTF 545 (655)
Q Consensus 472 ~~~~~s~S~d~s~l~ws~dg~~~la------sss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~ 545 (655)
+..+.+++.++.+.+|+......+. .....+...++++++|+.|+.|++|+..... ..
T Consensus 187 ~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~s~d~~i~iwd~~~~~----------------~~ 250 (342)
T d2ovrb2 187 GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQ----------------CL 250 (342)
T ss_dssp SSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCC----------------EE
T ss_pred CCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCCCEEEEEcCCCEEEEEeccccc----------------cc
Confidence 3567778888999999887632211 1111334455789999999999999654431 12
Q ss_pred eeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec-----ccCCCEEEEEEcCCCCEEEEEeCCCc
Q 006229 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-----EHTQWITDVRFSPSLSRLATSSADRT 620 (655)
Q Consensus 546 ~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~-----gH~~~ItsVafsPdg~~LaSgS~Dgt 620 (655)
..+.....|...+.++.|+ +.+|++|+.|++|+|||+++++++.++. +|...|++|+|+|++.+|++|+.||+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt 328 (342)
T d2ovrb2 251 QTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGT 328 (342)
T ss_dssp EEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSS
T ss_pred ccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCC
Confidence 2333334567777777775 5799999999999999999999988774 68889999999999999999999996
Q ss_pred ----EEEEECC
Q 006229 621 ----VRVWDTE 627 (655)
Q Consensus 621 ----VrVWDl~ 627 (655)
|++||+.
T Consensus 329 ~~~~l~~~Df~ 339 (342)
T d2ovrb2 329 EETKLLVLDFD 339 (342)
T ss_dssp SCCEEEEEECC
T ss_pred CeeEEEEEeCC
Confidence 9999986
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=7.3e-13 Score=127.23 Aligned_cols=169 Identities=17% Similarity=0.230 Sum_probs=131.4
Q ss_pred CCceeccCCCCceEEEEecCCCCcc------cccCcccCCCCcEEEeccCCCcEEEEecCCCC-----------------
Q 006229 471 RPTLQHNGASSKSLLMFGSDGMGSL------TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDA----------------- 527 (655)
Q Consensus 471 ~~~~~~s~S~d~s~l~ws~dg~~~l------asss~~l~~~~~~LasGS~D~tV~vW~s~d~~----------------- 527 (655)
+...+++++.|+++.+|+......+ ......+...+++|++|+.|++|++|+...+.
T Consensus 24 d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (293)
T d1p22a2 24 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRF 103 (293)
T ss_dssp CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEEC
T ss_pred cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeecccceeecccccccccccccccccccccccccccccccccc
Confidence 4568899999999999998752211 11112334456899999999999999876654
Q ss_pred -------CCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCE
Q 006229 528 -------DPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWI 600 (655)
Q Consensus 528 -------d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~I 600 (655)
...+....+|+............+..|...|.++.+. ...+++++.|++|++||+++++++..+.+|...|
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v 181 (293)
T d1p22a2 104 NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI 181 (293)
T ss_dssp CTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred cccceeecccccceeEeeccccccccccccccccccccccceec--ccccccccCCCceeeecCCCCcEEEEEccccccc
Confidence 1122333566665555555667778899999888886 4578899999999999999999999999999999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceee
Q 006229 601 TDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFV 643 (655)
Q Consensus 601 tsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~ 643 (655)
..+.++ +.+|++++.|++|+|||+++..++..+..+...+.
T Consensus 182 ~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~ 222 (293)
T d1p22a2 182 ACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR 222 (293)
T ss_dssp EEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE
T ss_pred ccccCC--CCeEEEecCCCEEEEEecccceeeeeecccceeee
Confidence 998886 57999999999999999999999998887766543
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.49 E-value=3.4e-13 Score=133.37 Aligned_cols=158 Identities=16% Similarity=0.212 Sum_probs=119.5
Q ss_pred ceeccCCCCceEEEEecCCCCccccc----------CcccCCCCcEEEeccCCCcEEEEecCCCCCC-------------
Q 006229 473 TLQHNGASSKSLLMFGSDGMGSLTSA----------PNQLTDMDRFVDDGSLDDNVESFLSPDDADP------------- 529 (655)
Q Consensus 473 ~~~~s~S~d~s~l~ws~dg~~~lass----------s~~l~~~~~~LasGS~D~tV~vW~s~d~~d~------------- 529 (655)
..+.+++.|+.+.+|........... .........++++++.|++|++|+.......
T Consensus 65 ~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~ 144 (355)
T d1nexb2 65 GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVF 144 (355)
T ss_dssp TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEE
T ss_pred CEEEEEecccccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccce
Confidence 35677788899999988763221111 1122344577899999999999976553210
Q ss_pred ----------------------------------CCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeC
Q 006229 530 ----------------------------------RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH 575 (655)
Q Consensus 530 ----------------------------------~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~ 575 (655)
.+..+++|+..++ +.+..+.++...+.++.|++++.++++++.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (355)
T d1nexb2 145 HTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQM---KCLYILSGHTDRIYSTIYDHERKRCISASM 221 (355)
T ss_dssp SCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEEETTTTEEEEEET
T ss_pred eccccccceeeeeeeccccccccccccceeeeecccceeeeeecccc---cceeeeeccccccccccccccceeeecccc
Confidence 1112234444433 456667788899999999999999999999
Q ss_pred CCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEE
Q 006229 576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFI 635 (655)
Q Consensus 576 DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l 635 (655)
|++|++||++++.++..+.+|...|++|+|+ +++|++|+.||+|++||++++......
T Consensus 222 d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~ 279 (355)
T d1nexb2 222 DTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY 279 (355)
T ss_dssp TSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred cceEEeeeccccccccccccccccccccccc--cceeeeeecccccccccccccceeccc
Confidence 9999999999999999999999999999997 479999999999999999988765443
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.46 E-value=4.7e-13 Score=134.17 Aligned_cols=120 Identities=8% Similarity=-0.030 Sum_probs=95.6
Q ss_pred EEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCC--cEEEEeCC
Q 006229 508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDK--KAVLWCTE 585 (655)
Q Consensus 508 ~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~Dg--tVrIWDl~ 585 (655)
++++++ ++.|.+|+...+ ..+ .+ +|...|.+++|+|||++|++++.|. .|++||++
T Consensus 17 ~~a~~~-~g~v~v~d~~~~-------------------~~~-~~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~ 74 (360)
T d1k32a3 17 LIAFVS-RGQAFIQDVSGT-------------------YVL-KV-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYR 74 (360)
T ss_dssp CEEEEE-TTEEEEECTTSS-------------------BEE-EC-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETT
T ss_pred EEEEEE-CCeEEEEECCCC-------------------cEE-Ec-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECC
Confidence 556554 478888854332 122 22 6889999999999999998877654 79999999
Q ss_pred CCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 586 t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
+++.. .+.+|...|++++|+|++++|++++.|+.+++|++.++.+...+..+... +.+++|+|+
T Consensus 75 ~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~spd 138 (360)
T d1k32a3 75 TGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAM-----ITDFTISDN 138 (360)
T ss_dssp TCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSC-----CCCEEECTT
T ss_pred CCcEE-EeeCCCceEEeeeecccccccceeccccccccccccccceeeeeeccccc-----ccchhhccc
Confidence 87765 67789999999999999999999999999999999999998888776543 335666664
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.45 E-value=9.7e-14 Score=135.95 Aligned_cols=93 Identities=9% Similarity=0.005 Sum_probs=78.1
Q ss_pred eeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeE---EEEecccCCCEEEEEEcCCC-CEEEEEeCCCcE
Q 006229 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV---KSTLEEHTQWITDVRFSPSL-SRLATSSADRTV 621 (655)
Q Consensus 546 ~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~---l~tl~gH~~~ItsVafsPdg-~~LaSgS~DgtV 621 (655)
+.|..+.+|.+.|++|+|+|++++||+|+.|++|||||+++... +....+|...|++|+|+|++ .+|+||+.|++|
T Consensus 2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v 81 (342)
T d1yfqa_ 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI 81 (342)
T ss_dssp EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence 45677889999999999999999999999999999999976543 23334799999999999864 589999999999
Q ss_pred EEEECCCCeEEEEEecc
Q 006229 622 RVWDTENVRKLTFICCY 638 (655)
Q Consensus 622 rVWDl~tg~~v~~l~~~ 638 (655)
++||+........+..+
T Consensus 82 ~~w~~~~~~~~~~~~~~ 98 (342)
T d1yfqa_ 82 LKVDLIGSPSFQALTNN 98 (342)
T ss_dssp EEECSSSSSSEEECBSC
T ss_pred eeeeccccccccccccc
Confidence 99999877666555443
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=2.9e-13 Score=130.12 Aligned_cols=90 Identities=21% Similarity=0.342 Sum_probs=78.9
Q ss_pred eeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 006229 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (655)
Q Consensus 546 ~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWD 625 (655)
..+.....|...|+|++| ||++||||+.|++|+|||+.+++++.++.+|++.|++|+| ++++|+||+.|++|++|+
T Consensus 6 ~~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~ 81 (293)
T d1p22a2 6 QRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWD 81 (293)
T ss_dssp CCEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEE
T ss_pred EEEeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeecccccccccccc
Confidence 456667788899998765 7999999999999999999999999999999999999987 578999999999999999
Q ss_pred CCCCeEEEEEeccc
Q 006229 626 TENVRKLTFICCYK 639 (655)
Q Consensus 626 l~tg~~v~~l~~~~ 639 (655)
+..+..........
T Consensus 82 ~~~~~~~~~~~~~~ 95 (293)
T d1p22a2 82 VNTGEMLNTLIHHC 95 (293)
T ss_dssp SSSCCEEEEECCCC
T ss_pred cccccccccccccc
Confidence 99887776655443
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.38 E-value=2.4e-12 Score=128.93 Aligned_cols=113 Identities=11% Similarity=0.025 Sum_probs=90.8
Q ss_pred CCCCcEEEeccCCC--cEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEE
Q 006229 503 TDMDRFVDDGSLDD--NVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV 580 (655)
Q Consensus 503 ~~~~~~LasGS~D~--tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVr 580 (655)
.+.+++|++++.|. .|++|+...+ .+..+..|...|.+++|+|||++|++++.|+.++
T Consensus 51 spDg~~l~~~~~~~g~~v~v~d~~~~--------------------~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~ 110 (360)
T d1k32a3 51 GGDTKVAFIHGTREGDFLGIYDYRTG--------------------KAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIM 110 (360)
T ss_dssp CSSSEEEEEEEETTEEEEEEEETTTC--------------------CEEECCCCCCSEEEEEECTTSSEEEEEETTSEEE
T ss_pred CCCCCEEEEEEcCCCCEEEEEECCCC--------------------cEEEeeCCCceEEeeeecccccccceeccccccc
Confidence 33444555544443 6777755433 3456678999999999999999999999999999
Q ss_pred EEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCeEEEEE
Q 006229 581 LWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRVWDTENVRKLTFI 635 (655)
Q Consensus 581 IWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS----------~DgtVrVWDl~tg~~v~~l 635 (655)
+|++.++++...+..|...+.+++|+|+|++|+.++ .++.+++||+.++++....
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~ 175 (360)
T d1k32a3 111 TVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT 175 (360)
T ss_dssp EEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECS
T ss_pred cccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeec
Confidence 999999999999999999999999999999998654 4556999999988765443
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.34 E-value=2.4e-12 Score=136.00 Aligned_cols=114 Identities=10% Similarity=-0.044 Sum_probs=94.9
Q ss_pred cEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 006229 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (655)
Q Consensus 507 ~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t 586 (655)
.++++.+.|++|++|+..++ +++.++..|. .|..++|||||++|++++.|++|++||+.+
T Consensus 33 ~~~V~~~~dg~v~vwD~~t~-------------------~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t 92 (426)
T d1hzua2 33 LFSVTLRDAGQIALVDGDSK-------------------KIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWA 92 (426)
T ss_dssp EEEEEETTTTEEEEEETTTC-------------------SEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTS
T ss_pred EEEEEEcCCCEEEEEECCCC-------------------cEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccC
Confidence 45688889999999966554 5677777774 599999999999999999999999999998
Q ss_pred CeEEEE-----ecccCCCEEEEEEcCCCCEEEE-EeCCCcEEEEECCCCeEEEEEecccc
Q 006229 587 FTVKST-----LEEHTQWITDVRFSPSLSRLAT-SSADRTVRVWDTENVRKLTFICCYKC 640 (655)
Q Consensus 587 ~~~l~t-----l~gH~~~ItsVafsPdg~~LaS-gS~DgtVrVWDl~tg~~v~~l~~~~~ 640 (655)
+++..+ ..+|...+.+++|+|||++|++ +..|++|++||..++.++..+..+..
T Consensus 93 ~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~ 152 (426)
T d1hzua2 93 KEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGM 152 (426)
T ss_dssp SSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEE
T ss_pred CceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCC
Confidence 875432 3478888999999999998754 55899999999999999988876654
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.31 E-value=5.1e-12 Score=135.12 Aligned_cols=114 Identities=11% Similarity=-0.087 Sum_probs=95.0
Q ss_pred cEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 006229 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (655)
Q Consensus 507 ~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t 586 (655)
-++++.+.|++|.+|+...+ ++++.+..+. .|..++|||||++|++++.|++|++||+.+
T Consensus 33 ~~~v~~~d~g~v~v~D~~t~-------------------~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t 92 (432)
T d1qksa2 33 LFSVTLRDAGQIALIDGSTY-------------------EIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWM 92 (432)
T ss_dssp EEEEEETTTTEEEEEETTTC-------------------CEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTS
T ss_pred EEEEEEcCCCEEEEEECCCC-------------------cEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeC
Confidence 44689999999999965544 5677777664 699999999999999999999999999988
Q ss_pred CeE-----EEEecccCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCeEEEEEecccc
Q 006229 587 FTV-----KSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENVRKLTFICCYKC 640 (655)
Q Consensus 587 ~~~-----l~tl~gH~~~ItsVafsPdg~~L-aSgS~DgtVrVWDl~tg~~v~~l~~~~~ 640 (655)
++. +....+|.+.+.++.|+|||++| ++++.|++|+|||+.+++++..+..+..
T Consensus 93 ~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~ 152 (432)
T d1qksa2 93 KEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGM 152 (432)
T ss_dssp SSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEE
T ss_pred CCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCc
Confidence 753 23335788888999999999986 7888899999999999999988876543
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.15 E-value=2.1e-10 Score=113.06 Aligned_cols=124 Identities=14% Similarity=0.087 Sum_probs=97.2
Q ss_pred cEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecC--CCCCeeEEEEcCCCCEE-EEEeCCCcEEEEe
Q 006229 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA--STSKVESCHFSPDGKLL-ATGGHDKKAVLWC 583 (655)
Q Consensus 507 ~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~g--H~~~V~sl~fSpdG~lL-aSgs~DgtVrIWD 583 (655)
+|+++++.|++|.+|+.... +.+..+.. +...+.+++|+|||++| ++++.|+.|++||
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~-------------------~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D 62 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKM-------------------AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID 62 (337)
T ss_dssp EEEEEEETTTEEEEEETTTT-------------------EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred eEEEEEcCCCEEEEEECCCC-------------------eEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEE
Confidence 58899999999999976554 45555543 44568899999999977 5667899999999
Q ss_pred CCCCeEEEEecccCC-----CEEEEEEcCCCCEEEEEe------------CCCcEEEEECCCCeEEEEEecccceeeeec
Q 006229 584 TESFTVKSTLEEHTQ-----WITDVRFSPSLSRLATSS------------ADRTVRVWDTENVRKLTFICCYKCIFVSTA 646 (655)
Q Consensus 584 l~t~~~l~tl~gH~~-----~ItsVafsPdg~~LaSgS------------~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~ 646 (655)
+.+++.+..+..+.. .+..++|+|+++++++++ .+..+.+||..+++++..+..+..
T Consensus 63 ~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~------ 136 (337)
T d1pbyb_ 63 LVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQ------ 136 (337)
T ss_dssp TTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSS------
T ss_pred CCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCC------
Confidence 999999988876543 456899999999998877 467899999999999888765543
Q ss_pred eeeEEEecC
Q 006229 647 IGSCFFAPT 655 (655)
Q Consensus 647 Vss~~F~P~ 655 (655)
+..++|+|+
T Consensus 137 ~~~~~~s~d 145 (337)
T d1pbyb_ 137 ITMLAWARD 145 (337)
T ss_dssp CCCEEECTT
T ss_pred ceEEEEcCC
Confidence 334556554
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.06 E-value=6.6e-10 Score=118.37 Aligned_cols=164 Identities=10% Similarity=-0.015 Sum_probs=116.4
Q ss_pred eeccCCCCceEEEEecCCCCc-------ccccCcccCCCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceee
Q 006229 474 LQHNGASSKSLLMFGSDGMGS-------LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFT 546 (655)
Q Consensus 474 ~~~s~S~d~s~l~ws~dg~~~-------lasss~~l~~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~ 546 (655)
+..+.+.++.+.+|+.+.... .......|.+.++++++++.|++|++|+...+. .....
T Consensus 34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~--------------~~~~~ 99 (432)
T d1qksa2 34 FSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKE--------------PTTVA 99 (432)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSS--------------CCEEE
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCC--------------ceEEE
Confidence 346777889999999886221 122333678888999999999999999765441 11123
Q ss_pred eEEeecCCCCCeeEEEEcCCCCEE-EEEeCCCcEEEEeCCCCeEEEEeccc-----------CCCEEEEEEcCCCCEE-E
Q 006229 547 EFQLIPASTSKVESCHFSPDGKLL-ATGGHDKKAVLWCTESFTVKSTLEEH-----------TQWITDVRFSPSLSRL-A 613 (655)
Q Consensus 547 ~v~~l~gH~~~V~sl~fSpdG~lL-aSgs~DgtVrIWDl~t~~~l~tl~gH-----------~~~ItsVafsPdg~~L-a 613 (655)
++....+|.+.+.+..|+|||++| ++++.|++|+|||..+++++.++..| ......|.++|++.++ +
T Consensus 100 ~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~v 179 (432)
T d1qksa2 100 EIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIV 179 (432)
T ss_dssp EEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEE
T ss_pred EEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEE
Confidence 444445566677788899999975 77888999999999999999887654 3456788999999875 5
Q ss_pred EEeCCCcEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 614 TSSADRTVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 614 SgS~DgtVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
+.+.++.|.+||..+++......... ......++|+|+
T Consensus 180 s~~~~~~i~~~d~~~~~~~~~~~i~~----g~~~~~~~~spd 217 (432)
T d1qksa2 180 NVKETGKILLVDYTDLNNLKTTEISA----ERFLHDGGLDGS 217 (432)
T ss_dssp EETTTTEEEEEETTCSSEEEEEEEEC----CSSEEEEEECTT
T ss_pred EEccCCeEEEEEccCCCcceEEEEcc----cCccccceECCC
Confidence 66778999999999877654332111 112345667765
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.03 E-value=4.2e-09 Score=102.17 Aligned_cols=110 Identities=22% Similarity=0.182 Sum_probs=87.6
Q ss_pred EeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEE-EEEeCCCcEEEEeCCCCe
Q 006229 510 DDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLL-ATGGHDKKAVLWCTESFT 588 (655)
Q Consensus 510 asGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lL-aSgs~DgtVrIWDl~t~~ 588 (655)
++++.|++|.+|+..++ +.++++... ..+..++|+|||++| ++++.+++|++||+.+++
T Consensus 6 V~~~~~~~v~v~D~~t~-------------------~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~ 65 (301)
T d1l0qa2 6 IANSESDNISVIDVTSN-------------------KVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN 65 (301)
T ss_dssp EEETTTTEEEEEETTTT-------------------EEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE
T ss_pred EEECCCCEEEEEECCCC-------------------eEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc
Confidence 46678999999966544 344555433 457899999999976 567789999999999999
Q ss_pred EEEEecccCCCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCeEEEEEecccc
Q 006229 589 VKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWDTENVRKLTFICCYKC 640 (655)
Q Consensus 589 ~l~tl~gH~~~ItsVafsPdg~~La-SgS~DgtVrVWDl~tg~~v~~l~~~~~ 640 (655)
++.++..|. .+..++|++++.+++ ++..|+.+++||..+++++..+..+..
T Consensus 66 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (301)
T d1l0qa2 66 VIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKS 117 (301)
T ss_dssp EEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSS
T ss_pred eeeeeeccc-cccccccccccccccccccccceeeecccccceeeeecccccc
Confidence 999998776 468899999998655 555688899999999999988876654
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.03 E-value=4e-10 Score=118.62 Aligned_cols=95 Identities=6% Similarity=0.077 Sum_probs=78.7
Q ss_pred eeeEEeecCCCCCeeEEEEcCCCCEEE-------EEeCCCcEEEEeCCCCeEEEEe---------cccCCCEEEEEEcCC
Q 006229 545 FTEFQLIPASTSKVESCHFSPDGKLLA-------TGGHDKKAVLWCTESFTVKSTL---------EEHTQWITDVRFSPS 608 (655)
Q Consensus 545 ~~~v~~l~gH~~~V~sl~fSpdG~lLa-------Sgs~DgtVrIWDl~t~~~l~tl---------~gH~~~ItsVafsPd 608 (655)
++...++.+|...|..++|+|||++|+ +++.|++|+|||++++++..++ ..|...|.+++|+||
T Consensus 293 ~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpD 372 (426)
T d1hzua2 293 WKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKR 372 (426)
T ss_dssp TSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSS
T ss_pred ceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCC
Confidence 356778899999999999999999999 4667899999999998766554 246677999999999
Q ss_pred CCEEE-EE----eCCCcEEEEECCCCeEEEEEeccc
Q 006229 609 LSRLA-TS----SADRTVRVWDTENVRKLTFICCYK 639 (655)
Q Consensus 609 g~~La-Sg----S~DgtVrVWDl~tg~~v~~l~~~~ 639 (655)
|++|+ |+ +.|++|+|||.++++.+..+..+.
T Consensus 373 Gk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~ 408 (426)
T d1hzua2 373 GDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR 408 (426)
T ss_dssp SSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCTT
T ss_pred CCEEEEEEecCCCCCCeEEEEECCCCeEEEEECCCC
Confidence 99774 43 358899999999999888887654
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=98.97 E-value=1.3e-08 Score=98.71 Aligned_cols=85 Identities=13% Similarity=0.043 Sum_probs=71.0
Q ss_pred CCeeEEEEcCCCCEEEEEeC---CCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCeE
Q 006229 556 SKVESCHFSPDGKLLATGGH---DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENVRK 631 (655)
Q Consensus 556 ~~V~sl~fSpdG~lLaSgs~---DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~L-aSgS~DgtVrVWDl~tg~~ 631 (655)
..+..++|+++++.++.++. +++|++||+.+++++.++.. ...+++|+|+|||++| ++++.|++|+|||+.+++.
T Consensus 200 ~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~ 278 (301)
T d1l0qa2 200 AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV-GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTI 278 (301)
T ss_dssp SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred CCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcC-CCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeE
Confidence 45778999999998776643 46899999999999988864 4568999999999986 5778899999999999999
Q ss_pred EEEEecccce
Q 006229 632 LTFICCYKCI 641 (655)
Q Consensus 632 v~~l~~~~~~ 641 (655)
+.++......
T Consensus 279 ~~~~~vg~~P 288 (301)
T d1l0qa2 279 TATMAVGKNP 288 (301)
T ss_dssp EEEEECSSSE
T ss_pred EEEEeCCCCC
Confidence 9998765443
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=98.92 E-value=4.4e-09 Score=103.80 Aligned_cols=110 Identities=13% Similarity=0.064 Sum_probs=79.9
Q ss_pred EEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEe-CCCcEEEEeCCCC
Q 006229 509 VDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTESF 587 (655)
Q Consensus 509 LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs-~DgtVrIWDl~t~ 587 (655)
+++++.|++|++|+..... ....+.. ..|.+.|.+|+|||||++|++++ .|+.|++|++...
T Consensus 7 ~v~~~~~~~I~v~~~~~~~----------------~l~~~~~-~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~ 69 (333)
T d1ri6a_ 7 YIASPESQQIHVWNLNHEG----------------ALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPD 69 (333)
T ss_dssp EEEEGGGTEEEEEEECTTS----------------CEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred EEECCCCCcEEEEEEcCCC----------------CeEEEEE-EcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCC
Confidence 4677899999999654331 1222333 35678899999999999886555 5899999999765
Q ss_pred eEEEEec---ccCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCeEEEEE
Q 006229 588 TVKSTLE---EHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENVRKLTFI 635 (655)
Q Consensus 588 ~~l~tl~---gH~~~ItsVafsPdg~~LaSgS~-DgtVrVWDl~tg~~v~~l 635 (655)
....++. .+...+.+|+|+|||++|++++. +++|++|+..........
T Consensus 70 ~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~ 121 (333)
T d1ri6a_ 70 DGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVV 121 (333)
T ss_dssp TCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEE
T ss_pred CCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecc
Confidence 4333332 34556788999999999999985 778999998876554443
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=98.92 E-value=2e-09 Score=106.29 Aligned_cols=95 Identities=8% Similarity=-0.062 Sum_probs=77.3
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEec-ccCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCeEEEEEecc
Q 006229 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENVRKLTFICCY 638 (655)
Q Consensus 561 l~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~-gH~~~ItsVafsPdg~~L-aSgS~DgtVrVWDl~tg~~v~~l~~~ 638 (655)
++|++++++|++++.|++|.|||+++++++.++. .|...+.+|+|+|||++| ++++.|+.|++||+.+++.+..+...
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~ 81 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS 81 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence 4689999999999999999999999999999987 567788999999999987 55668999999999999998877654
Q ss_pred cc-eeeeeceeeEEEecC
Q 006229 639 KC-IFVSTAIGSCFFAPT 655 (655)
Q Consensus 639 ~~-~v~s~~Vss~~F~P~ 655 (655)
.. ......+..++|+||
T Consensus 82 ~~~~~~~~~~~~v~~s~D 99 (346)
T d1jmxb_ 82 SVPGEVGRSMYSFAISPD 99 (346)
T ss_dssp CSTTEEEECSSCEEECTT
T ss_pred ccccccCCceEEEEEecC
Confidence 32 222233456777764
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.90 E-value=7.4e-09 Score=101.66 Aligned_cols=88 Identities=11% Similarity=-0.075 Sum_probs=77.1
Q ss_pred eecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 006229 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENV 629 (655)
Q Consensus 550 ~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg 629 (655)
.+..+...+.++.+++++.+++++ |+.|++||+.+++++..+. +...+.+|+|+|||++|++++.|++|+|||++++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~ 311 (337)
T d1pbyb_ 235 EVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETL 311 (337)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTC
T ss_pred EecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 344567778899999999988776 5899999999999998885 6778999999999999999999999999999999
Q ss_pred eEEEEEecccc
Q 006229 630 RKLTFICCYKC 640 (655)
Q Consensus 630 ~~v~~l~~~~~ 640 (655)
+.+.++.....
T Consensus 312 ~~v~~i~~~g~ 322 (337)
T d1pbyb_ 312 EKKGQVDLPGN 322 (337)
T ss_dssp CEEEEEECGGG
T ss_pred cEEEEEECCCC
Confidence 99998876444
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=98.84 E-value=8.1e-09 Score=101.77 Aligned_cols=90 Identities=12% Similarity=-0.002 Sum_probs=77.4
Q ss_pred EeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 006229 549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (655)
Q Consensus 549 ~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~t 628 (655)
..+..|...+.++.+++++.+++++.. +.|++||+.+++.+..+. +...+++|+|+|||++|++++.|+.|+|||+++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t 322 (346)
T d1jmxb_ 245 QEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDT 322 (346)
T ss_dssp EEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTT
T ss_pred EEeecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECcc
Confidence 344567788999999998888777664 579999999999998876 556799999999999999999999999999999
Q ss_pred CeEEEEEecccc
Q 006229 629 VRKLTFICCYKC 640 (655)
Q Consensus 629 g~~v~~l~~~~~ 640 (655)
++++.++.....
T Consensus 323 ~~~i~~i~~p~g 334 (346)
T d1jmxb_ 323 LEKVKNIKLPGG 334 (346)
T ss_dssp TEEEEEEECSSS
T ss_pred CCEEEEEECCCC
Confidence 999999886543
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=98.71 E-value=1.7e-07 Score=94.38 Aligned_cols=75 Identities=7% Similarity=-0.055 Sum_probs=62.7
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCE--EEEEeCCCcEEEEECCCCeEEEEEecccce
Q 006229 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR--LATSSADRTVRVWDTENVRKLTFICCYKCI 641 (655)
Q Consensus 566 dG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~--LaSgS~DgtVrVWDl~tg~~v~~l~~~~~~ 641 (655)
++..+++...++.|.+||+.+++.+..+. |...+.+|+|+|||++ +++++.|++|+|||+.+++.+..+..+...
T Consensus 287 ~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~ 363 (373)
T d2madh_ 287 EQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSG 363 (373)
T ss_pred CCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCC
Confidence 34445566778899999999999998875 7778999999999984 578899999999999999999999865443
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=98.60 E-value=3.4e-07 Score=89.81 Aligned_cols=141 Identities=12% Similarity=0.094 Sum_probs=95.5
Q ss_pred eccCCCCceEEEEecCCCCccc----------ccCcccCCCCcEE-EeccCCCcEEEEecCCCCCCCCccccccccCCCc
Q 006229 475 QHNGASSKSLLMFGSDGMGSLT----------SAPNQLTDMDRFV-DDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGF 543 (655)
Q Consensus 475 ~~s~S~d~s~l~ws~dg~~~la----------sss~~l~~~~~~L-asGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~ 543 (655)
.++++.+..+.+|+.+..+.+. +....+.+.+++| +++..|++|++|.......
T Consensus 7 ~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~--------------- 71 (333)
T d1ri6a_ 7 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDG--------------- 71 (333)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTC---------------
T ss_pred EEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCC---------------
Confidence 3455677888888875533211 1233557777777 5555689999996543310
Q ss_pred eeeeEEeecCCCCCeeEEEEcCCCCEEEEEeC-CCcEEEEeCCCCeEEE--EecccCCCEEEEEEcCCCCEEEEEeC-CC
Q 006229 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSA-DR 619 (655)
Q Consensus 544 t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~-DgtVrIWDl~t~~~l~--tl~gH~~~ItsVafsPdg~~LaSgS~-Dg 619 (655)
....+. ...+...+.+++|+|||++|++++. +++|++|+........ ....|...+.++.|+|+++++++++. +.
T Consensus 72 ~~~~~~-~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~ 150 (333)
T d1ri6a_ 72 ALTFAA-ESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQD 150 (333)
T ss_dssp CEEEEE-EEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGT
T ss_pred cEEEee-ecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccc
Confidence 111121 2234455778999999999999885 6789999887665443 34467788999999999999888885 55
Q ss_pred cEEEEECCCCeE
Q 006229 620 TVRVWDTENVRK 631 (655)
Q Consensus 620 tVrVWDl~tg~~ 631 (655)
.|.+|+......
T Consensus 151 ~i~~~~~~~~~~ 162 (333)
T d1ri6a_ 151 RICLFTVSDDGH 162 (333)
T ss_dssp EEEEEEECTTSC
T ss_pred eeeEEEeccCCc
Confidence 799999876543
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.58 E-value=2.2e-07 Score=92.49 Aligned_cols=128 Identities=10% Similarity=-0.019 Sum_probs=86.5
Q ss_pred CCCcEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCC-------
Q 006229 504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD------- 576 (655)
Q Consensus 504 ~~~~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~D------- 576 (655)
..+..++.++.++.+.+|....+.. .++...+.... ..+.. ..+......+++++++.+++..+.+
T Consensus 204 ~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~~---~~~~~-~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 276 (355)
T d2bbkh_ 204 QKAGRLVWPTYTGKIHQIDLSSGDA---KFLPAVEALTE---AERAD-GWRPGGWQQVAYHRALDRIYLLVDQRDEWRHK 276 (355)
T ss_dssp TTTTEEEEEBTTSEEEEEECTTSSC---EECCCEESSCH---HHHHT-TEEECSSSCEEEETTTTEEEEEEEECCTTCTT
T ss_pred CCCCeEEEecCCCeEEEEecCCCcE---EEEeccCCccc---ceEee-eeeccceEEEEEeCCCCeEEEEeccCCceeec
Confidence 3345566778889999996655421 11111111100 00000 0011234568899999988776554
Q ss_pred ---CcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCeEEEEEeccc
Q 006229 577 ---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS--RLATSSADRTVRVWDTENVRKLTFICCYK 639 (655)
Q Consensus 577 ---gtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~--~LaSgS~DgtVrVWDl~tg~~v~~l~~~~ 639 (655)
..|++||+.+++.+.++. +...+.+++|+|||+ ++++++.|++|+|||+++++.+.++..+.
T Consensus 277 ~~~~~v~v~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G 343 (355)
T d2bbkh_ 277 TASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLG 343 (355)
T ss_dssp SCEEEEEEEETTTCCEEEEEE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCC
T ss_pred CCCCeEEEEeCCCCcEEEEec-CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcC
Confidence 369999999999998886 445689999999997 45677889999999999999999997543
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.50 E-value=1.3e-07 Score=99.83 Aligned_cols=84 Identities=15% Similarity=0.107 Sum_probs=70.3
Q ss_pred eecCCCCCeeEEEEcCCCCEEEEEeC---------CCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCc
Q 006229 550 LIPASTSKVESCHFSPDGKLLATGGH---------DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620 (655)
Q Consensus 550 ~l~gH~~~V~sl~fSpdG~lLaSgs~---------DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~Dgt 620 (655)
.+..|...|.++.|||||++|+.++. ++.+.|||+.+++.. .+..|...+..+.|+|||++||.. .|+.
T Consensus 56 ~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~-~l~~~~~~~~~~~~SPDG~~ia~~-~~~~ 133 (470)
T d2bgra1 56 TFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYV-WNND 133 (470)
T ss_dssp TTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEE-ETTE
T ss_pred hhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCccc-ccccCCccccccccccCcceeeEe-eccc
Confidence 34456678999999999999998854 467889999998754 688899999999999999999996 4678
Q ss_pred EEEEECCCCeEEEEE
Q 006229 621 VRVWDTENVRKLTFI 635 (655)
Q Consensus 621 VrVWDl~tg~~v~~l 635 (655)
+++|++.++..+...
T Consensus 134 l~~~~~~~g~~~~~t 148 (470)
T d2bgra1 134 IYVKIEPNLPSYRIT 148 (470)
T ss_dssp EEEESSTTSCCEECC
T ss_pred ceEEECCCCceeeee
Confidence 999999988776544
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=98.45 E-value=4.6e-07 Score=91.10 Aligned_cols=87 Identities=14% Similarity=-0.025 Sum_probs=71.9
Q ss_pred cCCCCCeeEEEEcCCCCEEEEE-----eCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEe----------
Q 006229 552 PASTSKVESCHFSPDGKLLATG-----GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS---------- 616 (655)
Q Consensus 552 ~gH~~~V~sl~fSpdG~lLaSg-----s~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS---------- 616 (655)
..+..++.+++|+|||+.++.. +.++.|.+||..+++.+.++..+... .++|+|||++|++++
T Consensus 17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~ 94 (373)
T d2madh_ 17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGK 94 (373)
T ss_pred ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccc
Confidence 3577889999999999988764 23467999999999999998876644 799999999999875
Q ss_pred CCCcEEEEECCCCeEEEEEecccc
Q 006229 617 ADRTVRVWDTENVRKLTFICCYKC 640 (655)
Q Consensus 617 ~DgtVrVWDl~tg~~v~~l~~~~~ 640 (655)
.|+.|+|||+.+++.+..+..+..
T Consensus 95 ~~~~v~v~D~~t~~~~~~~~~~~~ 118 (373)
T d2madh_ 95 RTDYVEVFDPVTFLPIADIELPDA 118 (373)
T ss_pred cceEEEEEECCCCcEEEEEecCCc
Confidence 467899999999999888766554
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.43 E-value=6.3e-07 Score=89.07 Aligned_cols=92 Identities=12% Similarity=0.081 Sum_probs=70.2
Q ss_pred eeEEeecCCCCCeeEEEEcCCCCEEEEE----------eCCCcEEEEeCCCCeEEEEecccCC-------CEEEEEEcCC
Q 006229 546 TEFQLIPASTSKVESCHFSPDGKLLATG----------GHDKKAVLWCTESFTVKSTLEEHTQ-------WITDVRFSPS 608 (655)
Q Consensus 546 ~~v~~l~gH~~~V~sl~fSpdG~lLaSg----------s~DgtVrIWDl~t~~~l~tl~gH~~-------~ItsVafsPd 608 (655)
+.+.++..+. +..++|||||++|+++ +.|+.|++||+.+++.+..+..+.. ....++|+|+
T Consensus 39 ~~~~~~~~g~--~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~d 116 (355)
T d2bbkh_ 39 RVIGMIDGGF--LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPD 116 (355)
T ss_dssp EEEEEEEECS--SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTT
T ss_pred cEEEEEECCC--CCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecC
Confidence 4455555443 4479999999988764 3478999999999999888764432 2356899999
Q ss_pred CCEEEEEe--CCCcEEEEECCCCeEEEEEeccc
Q 006229 609 LSRLATSS--ADRTVRVWDTENVRKLTFICCYK 639 (655)
Q Consensus 609 g~~LaSgS--~DgtVrVWDl~tg~~v~~l~~~~ 639 (655)
+++++.++ .+..+++||..+++.+..+..+.
T Consensus 117 g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (355)
T d2bbkh_ 117 GKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD 149 (355)
T ss_dssp SSEEEEEECSSSCEEEEEETTTTEEEEEEECCS
T ss_pred CCeeEEecCCCCceeeeeecCCCcEeeEEecCC
Confidence 99888775 46789999999999888776543
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.29 E-value=1.6e-06 Score=88.21 Aligned_cols=93 Identities=8% Similarity=-0.044 Sum_probs=72.7
Q ss_pred eeEEeecCCCCCeeEEEEcCCCCEEEEEe----------CCCcEEEEeCCCCeEEEEecccCCC-------EEEEEEcCC
Q 006229 546 TEFQLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEHTQW-------ITDVRFSPS 608 (655)
Q Consensus 546 ~~v~~l~gH~~~V~sl~fSpdG~lLaSgs----------~DgtVrIWDl~t~~~l~tl~gH~~~-------ItsVafsPd 608 (655)
+.+..+.++... .++|+|||++|++.+ .|++|++||..+++++..+..|... ...++|+||
T Consensus 57 ~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpD 134 (368)
T d1mdah_ 57 VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCAS 134 (368)
T ss_dssp EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTT
T ss_pred cEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCC
Confidence 455555555544 589999999888765 3788999999999998888654432 346899999
Q ss_pred CCEEEEEe-CCCcEEEEECCCCeEEEEEecccc
Q 006229 609 LSRLATSS-ADRTVRVWDTENVRKLTFICCYKC 640 (655)
Q Consensus 609 g~~LaSgS-~DgtVrVWDl~tg~~v~~l~~~~~ 640 (655)
|++|+.+. .++.|.+||+.+++.+..+..+.+
T Consensus 135 Gk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~ 167 (368)
T d1mdah_ 135 SACLLFFLFGSSAAAGLSVPGASDDQLTKSASC 167 (368)
T ss_dssp SSCEEEEECSSSCEEEEEETTTEEEEEEECSSC
T ss_pred CCEEEEEeCCCCeEEEEECCCCcEeEEeeccCc
Confidence 99998876 579999999999999988766543
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.94 E-value=4.8e-05 Score=76.82 Aligned_cols=81 Identities=5% Similarity=-0.047 Sum_probs=65.0
Q ss_pred eEEEEcCCCCEEEEEeCC---------CcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECC
Q 006229 559 ESCHFSPDGKLLATGGHD---------KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS--RLATSSADRTVRVWDTE 627 (655)
Q Consensus 559 ~sl~fSpdG~lLaSgs~D---------gtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~--~LaSgS~DgtVrVWDl~ 627 (655)
..+++++++..++....+ ..|++||..+++.+.++. +...+.+++|+|||+ .+++++.|++|+|||+.
T Consensus 267 ~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~ 345 (368)
T d1mdah_ 267 QMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAA 345 (368)
T ss_dssp SCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESS
T ss_pred eeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECC
Confidence 457889988876665332 358999999999998876 446799999999997 35677789999999999
Q ss_pred CCeEEEEEecccc
Q 006229 628 NVRKLTFICCYKC 640 (655)
Q Consensus 628 tg~~v~~l~~~~~ 640 (655)
+++.+.++..+..
T Consensus 346 tgk~~~~i~~g~~ 358 (368)
T d1mdah_ 346 SDQDQSSVELDKG 358 (368)
T ss_dssp SCEEEEECCCCSC
T ss_pred CCCEEEEEECCCC
Confidence 9999999876543
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.77 E-value=2.6e-05 Score=81.63 Aligned_cols=79 Identities=14% Similarity=0.068 Sum_probs=60.4
Q ss_pred eEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEeccc------------------CCCEEEEEEcCC
Q 006229 547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH------------------TQWITDVRFSPS 608 (655)
Q Consensus 547 ~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH------------------~~~ItsVafsPd 608 (655)
.+..+..|...+..+.|||||++||.. .|..+.+|+..+++.+.....+ .+....+.|+||
T Consensus 103 ~~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPD 181 (470)
T d2bgra1 103 QLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPN 181 (470)
T ss_dssp EECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTT
T ss_pred cccccccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCC
Confidence 345567888899999999999999985 5788999999988776544322 233466889999
Q ss_pred CCEEEEEeCCCc-EEEEEC
Q 006229 609 LSRLATSSADRT-VRVWDT 626 (655)
Q Consensus 609 g~~LaSgS~Dgt-VrVWDl 626 (655)
|++|++...|.+ |+.|++
T Consensus 182 Gk~ia~~~~d~~~v~~~~~ 200 (470)
T d2bgra1 182 GTFLAYAQFNDTEVPLIEY 200 (470)
T ss_dssp SSEEEEEEEECTTCCEEEE
T ss_pred CCccceeEecCCcCceEEE
Confidence 999999987655 555543
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=97.35 E-value=0.00042 Score=73.50 Aligned_cols=97 Identities=10% Similarity=0.003 Sum_probs=70.3
Q ss_pred CCCCCeeEEEEcCCCCEEEEE-eCCCcEEEEeCCCCeEEEEec-ccCCCEEEEEEcCCCC--EEEEEeCCC---------
Q 006229 553 ASTSKVESCHFSPDGKLLATG-GHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLS--RLATSSADR--------- 619 (655)
Q Consensus 553 gH~~~V~sl~fSpdG~lLaSg-s~DgtVrIWDl~t~~~l~tl~-gH~~~ItsVafsPdg~--~LaSgS~Dg--------- 619 (655)
.|...+.+..++|||++|++. ..+..|.+||++++++...++ .+...+..++|+|+++ |++..+.+.
T Consensus 69 ~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~ 148 (441)
T d1qnia2 69 CHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTD 148 (441)
T ss_dssp BCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSC
T ss_pred ccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccc
Confidence 355567777788999988665 467899999999999988775 5778899999999998 555555443
Q ss_pred --------cEEEEECCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 620 --------TVRVWDTENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 620 --------tVrVWDl~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
.+..+|..+.+....+..... ...+.|+|+
T Consensus 149 ~~~~~~~~~~~~iD~~t~~v~~qI~v~~~------p~~v~~spd 186 (441)
T d1qnia2 149 FSLDNSYTMFTAIDAETMDVAWQVIVDGN------LDNTDADYT 186 (441)
T ss_dssp CCGGGEEEEEEEEETTTCSEEEEEEESSC------CCCEEECSS
T ss_pred cccccccceEEeecCccceeeEEEecCCC------ccceEECCC
Confidence 235688888777766654432 335666654
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.95 E-value=0.0063 Score=57.28 Aligned_cols=95 Identities=14% Similarity=0.063 Sum_probs=62.7
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEeCCC-c--EEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeC---CCcEEEEE
Q 006229 552 PASTSKVESCHFSPDGKLLATGGHDK-K--AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWD 625 (655)
Q Consensus 552 ~gH~~~V~sl~fSpdG~lLaSgs~Dg-t--VrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~---DgtVrVWD 625 (655)
..+...+....|+|+++.++..+.++ . |.+.|..++.. .+..+...+...+|+|||++|+-.+. ...|.+||
T Consensus 167 ~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~ 244 (269)
T d2hqsa1 167 TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVS 244 (269)
T ss_dssp CCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred ecccccccccccccccceeEEEeecCCceeeeEeecccccc--eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEE
Confidence 34455677889999999888776554 4 44445555443 33345667788999999999875554 34689999
Q ss_pred CCCCeEEEEEecccceeeeeceeeEEEec
Q 006229 626 TENVRKLTFICCYKCIFVSTAIGSCFFAP 654 (655)
Q Consensus 626 l~tg~~v~~l~~~~~~v~s~~Vss~~F~P 654 (655)
+..+... .+..... .+...+|+|
T Consensus 245 ~dg~~~~-~lt~~~g-----~~~~p~WSP 267 (269)
T d2hqsa1 245 TDGRFKA-RLPATDG-----QVKFPAWSP 267 (269)
T ss_dssp TTSCCEE-ECCCSSS-----EEEEEEECC
T ss_pred CCCCCEE-EEeCCCC-----cEEeEEeCC
Confidence 9876543 3433322 234678988
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=96.81 E-value=0.0071 Score=59.26 Aligned_cols=80 Identities=15% Similarity=0.153 Sum_probs=63.0
Q ss_pred eeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 006229 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (655)
Q Consensus 546 ~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWD 625 (655)
+.+..+...+ .+..++++|||+++++...+++|..||.... ...+......+.+|+|+++|+++++...++.+.+|+
T Consensus 19 ~v~~~~p~~~-~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~--~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~ 95 (302)
T d2p4oa1 19 KIITSFPVNT-FLENLASAPDGTIFVTNHEVGEIVSITPDGN--QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVS 95 (302)
T ss_dssp EEEEEECTTC-CEEEEEECTTSCEEEEETTTTEEEEECTTCC--EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred cEEEECCCCC-CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC--EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEE
Confidence 4455554432 4788999999999999999999999986643 334555778899999999999999998888888887
Q ss_pred CCC
Q 006229 626 TEN 628 (655)
Q Consensus 626 l~t 628 (655)
...
T Consensus 96 ~~~ 98 (302)
T d2p4oa1 96 LVK 98 (302)
T ss_dssp EEC
T ss_pred ecc
Confidence 653
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=96.80 E-value=0.014 Score=59.10 Aligned_cols=74 Identities=11% Similarity=0.014 Sum_probs=50.7
Q ss_pred CCCeeEEEEcCCCCEEEEEe-CCCcEEEEeCCCCeEE--EEec-----------------ccCCCEEEEEEcCCCCEEEE
Q 006229 555 TSKVESCHFSPDGKLLATGG-HDKKAVLWCTESFTVK--STLE-----------------EHTQWITDVRFSPSLSRLAT 614 (655)
Q Consensus 555 ~~~V~sl~fSpdG~lLaSgs-~DgtVrIWDl~t~~~l--~tl~-----------------gH~~~ItsVafsPdg~~LaS 614 (655)
......+.|+||++++++.. .+++|.+||++..+.. .... .+......|.|+|+|++|++
T Consensus 192 g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyv 271 (365)
T d1jofa_ 192 GDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFA 271 (365)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEE
Confidence 45678999999999876655 5789999998765322 1111 12234568899999999887
Q ss_pred EeC-C-----CcEEEEECCC
Q 006229 615 SSA-D-----RTVRVWDTEN 628 (655)
Q Consensus 615 gS~-D-----gtVrVWDl~t 628 (655)
+.. + ..|.+|++..
T Consensus 272 snr~~~~~~~~~i~~~~~~~ 291 (365)
T d1jofa_ 272 SSRANKFELQGYIAGFKLRD 291 (365)
T ss_dssp EEEESSTTSCCEEEEEEECT
T ss_pred EcccCCCccceEEEEEEecC
Confidence 753 2 2377777754
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=96.66 E-value=0.015 Score=56.76 Aligned_cols=82 Identities=17% Similarity=0.187 Sum_probs=62.6
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCC--eEEEEe-cccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 006229 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF--TVKSTL-EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENV 629 (655)
Q Consensus 553 gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~--~~l~tl-~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg 629 (655)
.....+.+++|++||+++++...++.+.+|+.... ...... ......++.+++.++++++++-+.++.|..+|..++
T Consensus 65 ~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~ 144 (302)
T d2p4oa1 65 TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQP 144 (302)
T ss_dssp ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTT
T ss_pred cCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCC
Confidence 34567899999999999999888888888876432 222111 234567899999999999999999999999999877
Q ss_pred eEEEE
Q 006229 630 RKLTF 634 (655)
Q Consensus 630 ~~v~~ 634 (655)
.....
T Consensus 145 ~~~~~ 149 (302)
T d2p4oa1 145 SGSIW 149 (302)
T ss_dssp EEEEE
T ss_pred cceeE
Confidence 64443
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=96.61 E-value=0.017 Score=58.33 Aligned_cols=77 Identities=12% Similarity=0.069 Sum_probs=54.8
Q ss_pred CCCCeeEEEEcCCCCEEEEEeC-CCcEEEEeCCC-CeE--EEEe--cccCCCEEEEEEcCCCCEEEEEe-CCCcEEEEEC
Q 006229 554 STSKVESCHFSPDGKLLATGGH-DKKAVLWCTES-FTV--KSTL--EEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDT 626 (655)
Q Consensus 554 H~~~V~sl~fSpdG~lLaSgs~-DgtVrIWDl~t-~~~--l~tl--~gH~~~ItsVafsPdg~~LaSgS-~DgtVrVWDl 626 (655)
....+.++.|+|||++|++++. ..+|.+|++.. +.. ...+ .........++|+|++++++... .+++|.+||+
T Consensus 143 ~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~ 222 (365)
T d1jofa_ 143 ENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVI 222 (365)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEe
Confidence 3445789999999998888764 34677877643 322 2222 12345788999999999886666 5889999998
Q ss_pred CCCe
Q 006229 627 ENVR 630 (655)
Q Consensus 627 ~tg~ 630 (655)
....
T Consensus 223 ~~~~ 226 (365)
T d1jofa_ 223 DPAT 226 (365)
T ss_dssp CTTT
T ss_pred cCCC
Confidence 7654
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=96.59 E-value=0.00056 Score=72.50 Aligned_cols=114 Identities=16% Similarity=0.109 Sum_probs=73.8
Q ss_pred cEEEeccCCCcEEEEecCCCCCCCCccccccccCCCceeeeEEeecCCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 006229 507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES 586 (655)
Q Consensus 507 ~~LasGS~D~tV~vW~s~d~~d~~d~~~~l~d~~~~~t~~~v~~l~gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t 586 (655)
.+++++..|++|.+|+.....+.-....+ . ..++.......-......|+++|..+.+...|..|..|++..
T Consensus 271 yl~~~~~~~~tvsv~d~~k~~~~~~~~~~---~-----~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~ 342 (441)
T d1qnia2 271 YFIANGKLSPTVSVIAIDKLDDLFEDKIE---L-----RDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIAD 342 (441)
T ss_dssp EEEEECTTSSBEEEEEGGGHHHHTTTSSC---G-----GGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHH
T ss_pred EEEEeCCcCCcEEEEEeehhhhHhhccCC---c-----ceEEEeecccccCcccceecCCceEEEcccccceEEEeccch
Confidence 45678999999999965321100000000 0 011111111122345678999999999999999999999741
Q ss_pred ----------CeEEEEe-----cccCCCEEEEEEcCCCCEEEEE---eCCCcE----------EEEECCC
Q 006229 587 ----------FTVKSTL-----EEHTQWITDVRFSPSLSRLATS---SADRTV----------RVWDTEN 628 (655)
Q Consensus 587 ----------~~~l~tl-----~gH~~~ItsVafsPdg~~LaSg---S~DgtV----------rVWDl~t 628 (655)
...+..+ .||...+.+++|+|||+||+++ |.|+.+ .|.|+..
T Consensus 343 ~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k~s~dr~~~~g~~~~~~~q~~~i~~ 412 (441)
T d1qnia2 343 AIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSKFSKDRFLPVGPLHPENDQLIDISG 412 (441)
T ss_dssp HHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEESCCGGGSCCCSSSCCEEEEEEECSS
T ss_pred hhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecCccccccCcCCCCCCCccceeEEecC
Confidence 1234444 5899889999999999999999 567643 5677764
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.44 E-value=0.1 Score=49.92 Aligned_cols=84 Identities=6% Similarity=0.041 Sum_probs=65.6
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe--cccCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCC
Q 006229 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENV 629 (655)
Q Consensus 553 gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl--~gH~~~ItsVafsPdg~~LaSgS~-DgtVrVWDl~tg 629 (655)
.+......+++.++|+++++....+.|++||.. ++.+.++ .++......|+++++|+.+++-+. +++|.+||. +|
T Consensus 154 ~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G 231 (279)
T d1q7fa_ 154 KHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DG 231 (279)
T ss_dssp TTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TS
T ss_pred ccccccceeeeccceeEEeeeccccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CC
Confidence 455677889999999999998889999999975 5666666 356667899999999998877554 557999984 57
Q ss_pred eEEEEEecc
Q 006229 630 RKLTFICCY 638 (655)
Q Consensus 630 ~~v~~l~~~ 638 (655)
+.+.++...
T Consensus 232 ~~~~~~~~~ 240 (279)
T d1q7fa_ 232 QLISALESK 240 (279)
T ss_dssp CEEEEEEES
T ss_pred CEEEEEeCC
Confidence 777776543
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.29 E-value=0.058 Score=51.82 Aligned_cols=75 Identities=16% Similarity=0.177 Sum_probs=56.4
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeC-CCcEEEEeCCCCeEEEEeccc--CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 006229 553 ASTSKVESCHFSPDGKLLATGGH-DKKAVLWCTESFTVKSTLEEH--TQWITDVRFSPSLSRLATSSADRTVRVWDTENV 629 (655)
Q Consensus 553 gH~~~V~sl~fSpdG~lLaSgs~-DgtVrIWDl~t~~~l~tl~gH--~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg 629 (655)
++......|+++++|+++++-.. ++.|.+|+. +++.+.++... ....+.|++.|+|.+++ ++.+++|++|.....
T Consensus 197 g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 197 GITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQL 274 (279)
T ss_dssp TTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEE-EETTTEEEEEECSCC
T ss_pred ccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeeee
Confidence 34455788999999998777554 457999984 57887777533 34688999999997555 567999999987654
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=95.61 E-value=0.019 Score=53.67 Aligned_cols=70 Identities=16% Similarity=0.137 Sum_probs=51.5
Q ss_pred EEcCC--CCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeC-CC-----cEEEEECCCCeEEE
Q 006229 562 HFSPD--GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DR-----TVRVWDTENVRKLT 633 (655)
Q Consensus 562 ~fSpd--G~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~-Dg-----tVrVWDl~tg~~v~ 633 (655)
..||| |+.++-.+ ++.|.+.|+.+++.. .|..+...+...+|||||++||-.+. ++ .|.++++.+++...
T Consensus 5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~ 82 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR 82 (281)
T ss_dssp CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence 45788 88777654 456777899988765 56668888999999999999886542 22 37777887776554
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.55 E-value=0.017 Score=60.74 Aligned_cols=80 Identities=11% Similarity=-0.000 Sum_probs=58.6
Q ss_pred CCeeEEEEcCCCCEEEEEe---------CCCcEEEEeCCCCeEEEE--ecccCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 006229 556 SKVESCHFSPDGKLLATGG---------HDKKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624 (655)
Q Consensus 556 ~~V~sl~fSpdG~lLaSgs---------~DgtVrIWDl~t~~~l~t--l~gH~~~ItsVafsPdg~~LaSgS~DgtVrVW 624 (655)
-.+....|||||++|+.+. ..+.+.|+|+.+++.... .......+....|||||+.||-.. ++.|.+.
T Consensus 61 ~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~ 139 (465)
T d1xfda1 61 LRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYC 139 (465)
T ss_dssp TTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEE
T ss_pred cccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEE
Confidence 3567888999999877764 346788999988765432 233445677789999999998876 5678888
Q ss_pred ECCCCeEEEEEe
Q 006229 625 DTENVRKLTFIC 636 (655)
Q Consensus 625 Dl~tg~~v~~l~ 636 (655)
+..++..++...
T Consensus 140 ~~~~~~~~~lt~ 151 (465)
T d1xfda1 140 AHVGKQAIRVVS 151 (465)
T ss_dssp SSSSSCCEEEEC
T ss_pred ecCCCceEEEec
Confidence 888776665443
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=95.47 E-value=0.069 Score=52.64 Aligned_cols=70 Identities=13% Similarity=0.198 Sum_probs=58.1
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECC
Q 006229 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTE 627 (655)
Q Consensus 558 V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~-~LaSgS~DgtVrVWDl~ 627 (655)
.-.+++..+|++.++....+.|.+||.++++.+..+......+++|+|.|+++ +++|.+.+++|...++.
T Consensus 228 pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~ 298 (314)
T d1pjxa_ 228 ADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp EEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred ceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence 45789999999888887889999999998887777776777899999999987 45677778888888864
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.29 E-value=0.24 Score=46.68 Aligned_cols=74 Identities=9% Similarity=-0.015 Sum_probs=59.2
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 006229 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENV 629 (655)
Q Consensus 556 ~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg 629 (655)
....+++++++|+++++...++.|..+|.+...........-.....|+++++|.++++....+.|..++....
T Consensus 140 ~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~ 213 (260)
T d1rwia_ 140 NDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST 213 (260)
T ss_dssp CSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCS
T ss_pred CCcceeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCC
Confidence 34578999999999888888899999998765544333455667789999999999888888889988887644
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=94.90 E-value=0.19 Score=46.40 Aligned_cols=82 Identities=13% Similarity=0.201 Sum_probs=53.2
Q ss_pred EeecCCCCCeeEEEEcCCCCEEEEEeC-CC-----cEEEEeCCCCeEEEEec------ccCCCEEEEEEcCCCCEEEEEe
Q 006229 549 QLIPASTSKVESCHFSPDGKLLATGGH-DK-----KAVLWCTESFTVKSTLE------EHTQWITDVRFSPSLSRLATSS 616 (655)
Q Consensus 549 ~~l~gH~~~V~sl~fSpdG~lLaSgs~-Dg-----tVrIWDl~t~~~l~tl~------gH~~~ItsVafsPdg~~LaSgS 616 (655)
+.+..+.+.+...+|||||++||-... ++ .|.+++..+++...... +....+..+.|+|+|+.|+...
T Consensus 34 ~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 113 (281)
T d1k32a2 34 RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTD 113 (281)
T ss_dssp EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred EEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEE
Confidence 345556677889999999998886542 22 36777887776654321 1223457889999999988754
Q ss_pred C------CCcEEEEECCCCe
Q 006229 617 A------DRTVRVWDTENVR 630 (655)
Q Consensus 617 ~------DgtVrVWDl~tg~ 630 (655)
. ...+.+++...+.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~ 133 (281)
T d1k32a2 114 AMQPFSSMTCLYRVENDGIN 133 (281)
T ss_dssp TTSSSTTCCEEEEEEGGGTE
T ss_pred ccCCCccceeeeeecCCCce
Confidence 3 2235556665444
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=94.81 E-value=0.32 Score=47.50 Aligned_cols=96 Identities=11% Similarity=-0.055 Sum_probs=64.4
Q ss_pred eeEEEEcCCCCEE-EEEeCCCcEEEEeCCCC-eEEEE-------ecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 006229 558 VESCHFSPDGKLL-ATGGHDKKAVLWCTESF-TVKST-------LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN 628 (655)
Q Consensus 558 V~sl~fSpdG~lL-aSgs~DgtVrIWDl~t~-~~l~t-------l~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~t 628 (655)
.+.|+|++|++.| ++-+..+.|..||++.. ..... .......--.++++.+|++.++....+.|.+||. +
T Consensus 179 pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~ 257 (319)
T d2dg1a1 179 ANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-R 257 (319)
T ss_dssp EEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-T
T ss_pred eeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-C
Confidence 4679999999865 45566789999987532 11111 1111223457999999999898889999999996 6
Q ss_pred CeEEEEEecccc-eeeeeceeeEEEec
Q 006229 629 VRKLTFICCYKC-IFVSTAIGSCFFAP 654 (655)
Q Consensus 629 g~~v~~l~~~~~-~v~s~~Vss~~F~P 654 (655)
|+.+..+..... .-.+..+.+|+|.|
T Consensus 258 G~~l~~i~~P~~~~~~~~~~~~~~~~~ 284 (319)
T d2dg1a1 258 GYPIGQILIPGRDEGHMLRSTHPQFIP 284 (319)
T ss_dssp SCEEEEEECTTGGGTCSCBCCEEEECT
T ss_pred CcEEEEEeCCCcCCCcCceeeeEEEeC
Confidence 888877765432 12233355677765
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.78 E-value=0.26 Score=46.36 Aligned_cols=73 Identities=10% Similarity=-0.043 Sum_probs=53.4
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 006229 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (655)
Q Consensus 555 ~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~ 627 (655)
......|+++++|+++++....+.|..++.............-...+.|+++++|.++++-..+++|+..+..
T Consensus 181 ~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~~ 253 (260)
T d1rwia_ 181 ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSL 253 (260)
T ss_dssp CCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred cCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeCC
Confidence 3456789999999998888888888888876543332223334567899999999988887777777766544
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=94.70 E-value=0.18 Score=49.42 Aligned_cols=93 Identities=12% Similarity=0.091 Sum_probs=62.4
Q ss_pred eeEEEEcCCCC-----EEEEEeCCCcEEEEeCCCC-eE-----EEEecc-cCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 006229 558 VESCHFSPDGK-----LLATGGHDKKAVLWCTESF-TV-----KSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWD 625 (655)
Q Consensus 558 V~sl~fSpdG~-----lLaSgs~DgtVrIWDl~t~-~~-----l~tl~g-H~~~ItsVafsPdg~~LaSgS~DgtVrVWD 625 (655)
-+.++|++++. ++++-+..+.|..||+... .. ...+.+ +....-.+++..+|++.++....+.|.+||
T Consensus 174 pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~d 253 (314)
T d1pjxa_ 174 PNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFG 253 (314)
T ss_dssp EEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEEC
T ss_pred eeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEe
Confidence 35788988764 5555567788888887532 22 122222 223456799999999988888889999999
Q ss_pred CCCCeEEEEEecccceeeeeceeeEEEecC
Q 006229 626 TENVRKLTFICCYKCIFVSTAIGSCFFAPT 655 (655)
Q Consensus 626 l~tg~~v~~l~~~~~~v~s~~Vss~~F~P~ 655 (655)
.+.+..+..+...... ..+|+|.|+
T Consensus 254 p~~g~~~~~i~~p~~~-----~t~~afg~d 278 (314)
T d1pjxa_ 254 PDGGQPKMRIRCPFEK-----PSNLHFKPQ 278 (314)
T ss_dssp TTCBSCSEEEECSSSC-----EEEEEECTT
T ss_pred CCCCEEEEEEECCCCC-----EEEEEEeCC
Confidence 9888766666554322 345777664
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=94.61 E-value=0.28 Score=47.92 Aligned_cols=76 Identities=11% Similarity=0.090 Sum_probs=57.5
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCC--C--cEEEEECCCCe
Q 006229 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD--R--TVRVWDTENVR 630 (655)
Q Consensus 555 ~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~D--g--tVrVWDl~tg~ 630 (655)
...+..++|+++|++.++-..+++|..||.++......+.........|+|+++|+++++...| . .|...|..+..
T Consensus 39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~ 118 (319)
T d2dg1a1 39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN 118 (319)
T ss_dssp CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCS
T ss_pred CcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCce
Confidence 3446789999999988888889999999998877776666677788999999999988876543 2 34444444443
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.49 E-value=0.36 Score=44.43 Aligned_cols=64 Identities=25% Similarity=0.239 Sum_probs=48.3
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCCC---cEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeC
Q 006229 553 ASTSKVESCHFSPDGKLLATGGHDK---KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617 (655)
Q Consensus 553 gH~~~V~sl~fSpdG~lLaSgs~Dg---tVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~ 617 (655)
.+...|.+-+|||||+.||-...+. .+.+.+..++... .+..+...+.+..|+|+|+.|+..+.
T Consensus 36 ~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~i~~~~~ 102 (269)
T d2hqsa1 36 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALS 102 (269)
T ss_dssp EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEEC
T ss_pred cCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecCCCCeeeEeee
Confidence 3456688999999999998765443 3666676665544 55568888999999999999887765
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=93.98 E-value=0.87 Score=43.84 Aligned_cols=82 Identities=12% Similarity=-0.025 Sum_probs=58.5
Q ss_pred CeeEEEEcCCCCEE-EEEeCCCcEEEEeCCCC--------eEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 006229 557 KVESCHFSPDGKLL-ATGGHDKKAVLWCTESF--------TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627 (655)
Q Consensus 557 ~V~sl~fSpdG~lL-aSgs~DgtVrIWDl~t~--------~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~ 627 (655)
.-+.++|+++++.| ++-+..+.|..++++.. .....+.+-......++++.+|.+.++.-..+.|.+||.
T Consensus 149 ~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp- 227 (295)
T d2ghsa1 149 IPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT- 227 (295)
T ss_dssp SEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-
T ss_pred CcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-
Confidence 34689999999855 45556788888876421 122233445566888999999998877777889999996
Q ss_pred CCeEEEEEeccc
Q 006229 628 NVRKLTFICCYK 639 (655)
Q Consensus 628 tg~~v~~l~~~~ 639 (655)
+++.+..+....
T Consensus 228 ~G~~~~~i~lP~ 239 (295)
T d2ghsa1 228 DGNHIARYEVPG 239 (295)
T ss_dssp TCCEEEEEECSC
T ss_pred CCcEeeEecCCC
Confidence 577887776543
|
| >d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain superfamily: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain family: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain domain: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.33 E-value=0.027 Score=44.62 Aligned_cols=32 Identities=22% Similarity=0.321 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHhcCCCC
Q 006229 9 DKMLDVYIYDYLLKRKLHASAKAFQTEGKVST 40 (655)
Q Consensus 9 ~~~L~~yIydyl~k~~~~~tA~~f~~e~~~~~ 40 (655)
+.-||--|++||..+|+.++|.+|.+|++++.
T Consensus 7 ~eeL~kaI~~Yl~~~~~~~~~~~l~~e~~l~~ 38 (76)
T d1uuja_ 7 RDELNRAIADYLRSNGYEEAYSVFKKEAELDM 38 (76)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHCCcHHHHHHHHHHHCCCC
Confidence 34699999999999999999999999998753
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=91.84 E-value=0.7 Score=45.00 Aligned_cols=77 Identities=13% Similarity=0.119 Sum_probs=52.6
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCC-CcEEEEeCCCCeEEEEecc-cCCCEEEEEEcCCCCEEEEEeCC------CcEEEEE
Q 006229 554 STSKVESCHFSPDGKLLATGGHD-KKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSAD------RTVRVWD 625 (655)
Q Consensus 554 H~~~V~sl~fSpdG~lLaSgs~D-gtVrIWDl~t~~~l~tl~g-H~~~ItsVafsPdg~~LaSgS~D------gtVrVWD 625 (655)
|......+++.+||++++.|+.+ .++.+||..+..-...-.. ....-.+++..+||++++.|+.+ ..+.+||
T Consensus 74 ~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd 153 (387)
T d1k3ia3 74 HDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYS 153 (387)
T ss_dssp CCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEE
T ss_pred cccceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeec
Confidence 33344567888999999999876 6899999987654322211 11222456667899999988753 3589999
Q ss_pred CCCCe
Q 006229 626 TENVR 630 (655)
Q Consensus 626 l~tg~ 630 (655)
..+.+
T Consensus 154 ~~~~~ 158 (387)
T d1k3ia3 154 PSSKT 158 (387)
T ss_dssp TTTTE
T ss_pred CCCCc
Confidence 98754
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.82 E-value=0.39 Score=49.81 Aligned_cols=71 Identities=15% Similarity=0.174 Sum_probs=48.0
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEe-cccCCCE-----------------EEEEEcCCCCEEEEEe
Q 006229 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWI-----------------TDVRFSPSLSRLATSS 616 (655)
Q Consensus 555 ~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl-~gH~~~I-----------------tsVafsPdg~~LaSgS 616 (655)
...+....|||||+.||-.. ++.|.+.+..++..+... .+-...| ..+.|||||++||...
T Consensus 113 ~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~ 191 (465)
T d1xfda1 113 NAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAA 191 (465)
T ss_dssp SCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEE
T ss_pred ccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEE
Confidence 34566789999999888765 677888888776554333 2322222 4677999999999877
Q ss_pred CC-CcEEEEEC
Q 006229 617 AD-RTVRVWDT 626 (655)
Q Consensus 617 ~D-gtVrVWDl 626 (655)
.| ..|..|.+
T Consensus 192 ~D~s~V~~~~~ 202 (465)
T d1xfda1 192 INDSRVPIMEL 202 (465)
T ss_dssp EECTTSCEEEE
T ss_pred ecccccceeec
Confidence 53 33555543
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=88.98 E-value=4 Score=38.82 Aligned_cols=64 Identities=17% Similarity=0.116 Sum_probs=47.0
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCCCcEEEEeCCCCeEEEEecccCCCEEEEEEc-CCCCEE-EEEeC
Q 006229 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS-PSLSRL-ATSSA 617 (655)
Q Consensus 553 gH~~~V~sl~fSpdG~lLaSgs~DgtVrIWDl~t~~~l~tl~gH~~~ItsVafs-Pdg~~L-aSgS~ 617 (655)
+-.+..-.+++..+|++.++.-..+.|..||. +++.+..+.--...+++++|- ++.+.| +|.+.
T Consensus 196 ~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta~ 261 (295)
T d2ghsa1 196 GIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSAR 261 (295)
T ss_dssp TSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred cccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEeCCCCCEEEEEECC
Confidence 34455678899999997777767788999995 578888876545679999996 565554 44443
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=86.30 E-value=2.7 Score=44.27 Aligned_cols=61 Identities=10% Similarity=0.024 Sum_probs=41.8
Q ss_pred cEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEeccc
Q 006229 578 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYK 639 (655)
Q Consensus 578 tVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~ 639 (655)
.|.-||+.+++.+=..+... ....=.++-.+.+|+.|+.|+.++.+|.++|+.+-.+....
T Consensus 458 ~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~ 518 (573)
T d1kb0a2 458 RLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGT 518 (573)
T ss_dssp EEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred cEEEeCCCCCceEeeecCCC-CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCC
Confidence 46667777777665554222 11111123367899999999999999999999998876544
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=83.47 E-value=5.2 Score=42.09 Aligned_cols=62 Identities=8% Similarity=-0.147 Sum_probs=40.3
Q ss_pred cEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEecccc
Q 006229 578 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYKC 640 (655)
Q Consensus 578 tVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~~ 640 (655)
.|.-+|+.+++.+=... +.....+-.+.-.+.+++.|+.|+.++-+|.++|+.+-.+.....
T Consensus 445 ~l~AiD~~TG~~~W~~~-~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~ 506 (571)
T d2ad6a1 445 QIRAFDLTTGKAKWTKW-EKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSG 506 (571)
T ss_dssp EEEEECTTTCCEEEEEE-ESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred cEEEeccCCCceeeEcC-CCCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCC
Confidence 46666777777664432 111111111122467888999999999999999999987765543
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=82.70 E-value=4.1 Score=42.76 Aligned_cols=62 Identities=6% Similarity=0.000 Sum_probs=44.0
Q ss_pred CcEEEEeCCCCeEEEEecccCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCeEEEEEeccc
Q 006229 577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENVRKLTFICCYK 639 (655)
Q Consensus 577 gtVrIWDl~t~~~l~tl~gH~~~ItsVafsPdg~~LaSgS~DgtVrVWDl~tg~~v~~l~~~~ 639 (655)
+.|.-||+.+++.+-... +...+..-.+.-.+.+++.|+.||.++-+|.++|+.+-.+....
T Consensus 438 G~l~A~D~~tGk~~W~~~-~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~ 499 (560)
T d1kv9a2 438 GALLAWDPVKQKAAWKVP-YPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQS 499 (560)
T ss_dssp EEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred cceEEEeCCCCeEeeecc-CCCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCC
Confidence 457778888888775553 22222222233457789999999999999999999997776543
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=80.59 E-value=2.1 Score=41.38 Aligned_cols=73 Identities=11% Similarity=0.217 Sum_probs=51.1
Q ss_pred eeEEEEcCCCCEEEEEeCCC-----------cEEEEeCCCCeE--EEE-ecccCCCEEEEEEcCCCCEEEEEeCC-CcEE
Q 006229 558 VESCHFSPDGKLLATGGHDK-----------KAVLWCTESFTV--KST-LEEHTQWITDVRFSPSLSRLATSSAD-RTVR 622 (655)
Q Consensus 558 V~sl~fSpdG~lLaSgs~Dg-----------tVrIWDl~t~~~--l~t-l~gH~~~ItsVafsPdg~~LaSgS~D-gtVr 622 (655)
+...+...+|++++.|+.+. .+.+||..+++- +.. -..|...+..+++.+++++++.|+.+ .++.
T Consensus 22 ~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~ 101 (387)
T d1k3ia3 22 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS 101 (387)
T ss_dssp SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred cEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCccee
Confidence 33444556899888888531 367999987642 222 23455666778899999999999876 4799
Q ss_pred EEECCCCe
Q 006229 623 VWDTENVR 630 (655)
Q Consensus 623 VWDl~tg~ 630 (655)
+||..+..
T Consensus 102 ~yd~~~~~ 109 (387)
T d1k3ia3 102 LYDSSSDS 109 (387)
T ss_dssp EEEGGGTE
T ss_pred EecCccCc
Confidence 99987543
|