Citrus Sinensis ID: 006236

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-----
Protein Sequence
MEGGLPKLKDGALYNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLSKDGTEKKEYPIDVSLPDINNGVYGTDDFRMYAFKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYTCVPCPEFRKGACPKGDGCEYAHGVFESWLHPAQYRTRLCKDEIGCARKVCFFAHKPEELRPVYASTGSAMPSPSPVSASAVDMTTLSPLSLGSASMPLPATSTPPMSPLAAASSPKSGNLWQNKVNLTPPALQLPGSRLKTAFSARDLDLLLGLENRTSNLQQQQLLDEISSLSSPSSWSKEYSRIGDVNRNLDKVFESLDPSMLSQLQGMSQKQSTPTQLQSPTGLQMRQNMNQLRASYPAANLSSSPVRKPSSFGYDSSAAVAAAVMNSRSSAFAKRSQSFIDRGAVTSRAGLSMVSNPPTIRSSNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNITTPTTKGFTPSSSNVDEPDVSWVNSLVKDVTPEGQGLFGAEKQQYNPWMEQMYIEQEQMVA
Secondary Structure (PSIPRED)
cccccccccccccccccHHHHHHHHHccHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHccHHHHHHHHHccccccccccccccccHHHHHHHcccccHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccHHHHHHHHHHHccccccccccccccccccccccccHHccccccccHHHcccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHcccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHcccccHHHHHHHHHHHHccHHHHHHHHHHHccccccccccEEcccccccccccccccHHHHHHHHcHHHHHHHHHcccccccccccccccccHHHHHHccccHccHHHHHHHHHHcccccccccccccHHHHEcccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccEccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccEHHcccHHHHcccccccccccccEEEEEEcccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccHHHHHHHHcccccccccccccccccccccccccccHHHHHHcccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccHHHccccHccccccccccccccccccccccccccccccccEcHHHHHHcccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccHHHHHHHHHHHHHcHHHHcc
Coil and Loop (DISEMBL)
megglpklkdgalynKSSILLELSASDDISAFKREIeekgfdvdepsfwygrrigskkmgfeerTPIMIAAMFGSVAVLKYVIETGKVnvnracgsdgftALHCAVAGGANSSFEVVKLLLSAsadvncvdvygnkpvdlipvamksplhSRKRAIELLLKgdhtifeeeelvnipvpqlskdgtekkeypidvslpdinngvygtddfrmyafkikpcsrayshdwtecpfvhpgenarrrdprkypytcvpcpefrkgacpkgdgceyahgvfeswlhpaQYRTRLCKDeigcarkvcffahkpeelrpvyastgsampspspvsasavdmttlsplslgsasmplpatstppmsplaaasspksgnlwqnkvnltppalqlpgsrlktafSARDLDLLLGLENRTSNLQQQQLLDEisslsspsswskeysrigdvnrNLDKVFEsldpsmlsqlqgmsqkqstptqlqsptglQMRQNMNQLRAsypaanlssspvrkpssfgydsSAAVAAAVMNSRSSAFAKRSQSfidrgavtsraglsmvsnpptirssnlsdwsspdgkldwgvqgdelnklkksasfgfrsnnittpttkgftpsssnvdepdvswvnslvkdvtpegqglfgaekqqynpwMEQMYIEQEQMVA
Flexible Loop (DISEMBL)
megglpklkdgalYNKSSILLELSASDDISAFKREIeekgfdvdepsfwygrrigskkmgFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTifeeeelvnipvpqlskdgtekkeypidvslpdinngVYGTDDFRMYAFKIKPCSRAYSHDWTECPFvhpgenarrrdprKYPYTCVPCPEFRKGACPKGDGCEYAHGVFESWLHPAQYRTRLCKDEIGCARKVCFFAHKPEELRPVYASTGSAMPSPSPVSASAVDMTTLSPLSLGSASMPLPATSTPPMSPLAAASSPKSGNLWQNKVNLTPPALQLPGSRLKTAFSARDLDLLLGLENRTSNLQQQQLLDeisslsspsswsKEYSRIGDVNRNLDKVFESLDPSMLSQLQGMSQKQSTPTQLQSPTGLQMRQNMNQLRASYPAANLSSSPVRKPSSFGYDSSAAVAAAVMNSRSSAFAKRSQSFIDRGavtsraglsmvsnpptirssnlsdwsspdGKLDWGVQGDELNKLKksasfgfrsnnittpttkgftpsssnvdePDVSWVNSLVKDVTPEGQGLFGAEKQQYNPWMEQMYIEQEQMVA
Low Complexity Region (SEG)
MEGGLPKLKDGALYNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLSKDGTEKKEYPIDVSLPDINNGVYGTDDFRMYAFKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYTCVPCPEFRKGACPKGDGCEYAHGVFESWLHPAQYRTRLCKDEIGCARKVCFFAHKPEELRPVYASTGsampspspvsasavDMTTLSPLSLGsasmplpatstppmsplaaasspKSGNLWQNKVNLTPPALQLPGSRLKTAFSARDLDLLLGLENRTSNLQQQQLLDEIsslsspsswskeysRIGDVNRNLDKVFESLDPSMLSQLQGMSQKQSTPTQLQSPTGLQMRQNMNQLRASYPAANLSSSPVRKPSSFGYDssaavaaavmnsrssaFAKRSQSFIDRGAVTSRAGLSMVSNPPTIRSSNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNITTPTTKGFTPSSSNVDEPDVSWVNSLVKDVTPEGQGLFGAEKQQYNPWMEQMYIEQEQMVA
Disordered region (IsUnstruct)
*************Y***SILLELSA*DDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCA**********VVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVP**********EYPIDVSLPDINNGVYGTDDFRMYAFKIKPCSRAYSHDWTECPFVHPGEN*****PRKYPYTCVPCPEFRKGACPKGDGCEYAHGVFESWLHPAQYRTRLCKDEIGCARKVCFFAHKP************************************************************************************TAFSARDLDLLLGL******************************************************************************************************************************************************************************************************************SWVNSLVKDVT***QGLFGA***QYNPWM************
Disordered Region (DISOPRED)
**************NKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLSKDGTEKKEYPIDVSLPDINNGVYGTDDFRMYAFKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYTCVPCPEFRKGACPKGDGCEYAHGVFESWLHPAQYRTRLCKDEIGCARKVCFFAHKPEEL********************************************************************************************************************************************************************************************************************************************************************DWGVQGD**********************************EPDVSWV**********************NPWMEQMYIEQEQMVA
Disordered Region (DISEMBL)
MEGGLPKLKDGALYNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLSKDGTEKKEYPIDVSLPDINNGVYGTDDFRMYAFKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYTCVPCPEFRKGACPKGDGCEYAHGVFESWLHPAQYRTRLCKDEIGCARKVCFFAHKPEELRPVYA****************VDMTTLSPLSLGSASMPLPATSTPPMSPLAAASSPKSGNLWQNKVNLTPPALQLPGSRLKTAFSARDLDLLLGLENRTSNLQQQQLLDEI************YSRIGDVNRNLDKVFESLDPSMLS********************LQMRQNMNQLRASYPAANLSSSPVRKPSSFGYDSSAAVAAAVMNSRSSAFAKRSQSFIDRGAVTSRAGLSMVSNPPTIRSSNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNITTPTTK**********EPDVSWVNSLVKDVTPEGQGLFGAEKQQYNPWMEQMYIEQEQMVA
Disordered Region (DISPRO)
************LYNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLK***************************EYPIDVSLPDINNGVYGTDDFRMYAFKIKPCSRAYSHDWTECPFVHPG**ARRRDPRKYPYTCVPCPEFRKGACPKGDGCEYAHGVFESWLHPAQYRTRLCKDEIGCARKVCFFAHKPEELRPVY****************************************************************TPP*******RLKTAFSARDLDLLLGLENRTSNLQQQQLLDEISSL*********************KVFESLDPSMLSQLQGMSQKQSTPTQ*QSPTGLQM****************************************************************************************KLDWGVQGDELNKLK******************************DVSW*NSLVKD**********AEKQQYNPWMEQMYIEQEQ***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEGGLPKLKDGALYNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLSKDGTEKKEYPIDVSLPDINNGVYGTDDFRMYAFKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYTCVPCPEFRKGACPKGDGCEYAHGVFESWLHPAQYRTRLCKDEIGCARKVCFFAHKPEELRPVYASTGSAMPSPSPVSASAVDMTTLSPLSLGSASMPLPATSTPPMSPLAAASSPKSGNLWQNKVNLTPPALQLPGSRLKTAFSARDLDLLLGLENRTSNLQQQQLLDEISSLSSPSSWSKEYSRIGDVNRNLDKVFESLDPSMLSQLQGMSQKQSTPTQLQSPTGLQMRQNMNQLRASYPAANLSSSPVRKPSSFGYDSSAAVAAAVMNSRSSAFAKRSQSFIDRGAVTSRAGLSMVSNPPTIRSSNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNITTPTTKGFTPSSSNVDEPDVSWVNSLVKDVTPEGQGLFGAEKQQYNPWMEQMYIEQEQMVA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	655	2.2.26 [Sep-21-2011]
Q9XEE6	597	Zinc finger CCCH domain-c	yes	no	0.850	0.932	0.522	1e-175
Q9LUZ4	607	Zinc finger CCCH domain-c	no	no	0.885	0.955	0.506	1e-167
Q93ZS9	580	Zinc finger CCCH domain-c	no	no	0.830	0.937	0.520	1e-167
Q688R3	601	Zinc finger CCCH domain-c	yes	no	0.836	0.911	0.445	1e-124
P93755	716	Zinc finger CCCH domain-c	no	no	0.887	0.811	0.402	1e-120
Q9LXV4	706	Zinc finger CCCH domain-c	no	no	0.874	0.811	0.405	1e-117
Q10EL1	764	Zinc finger CCCH domain-c	yes	no	0.858	0.735	0.416	1e-111
Q84SL2	657	Zinc finger CCCH domain-c	no	no	0.859	0.856	0.358	6e-96
Q2QPW2	619	Zinc finger CCCH domain-c	no	no	0.830	0.878	0.393	8e-96
Q9M0G2	356	Zinc finger CCCH domain-c	no	no	0.271	0.5	0.492	2e-46

>sp|Q9XEE6|C3H29_ARATH Zinc finger CCCH domain-containing protein 29 OS=Arabidopsis thaliana GN=At2g40140 PE=2 SV=1

 Score =  615 bits (1585), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 348/666 (52%), Positives = 431/666 (64%), Gaps = 109/666 (16%)

Query: 7   KLKDGALYNKSSILLELSASDDISAFKREIEEK-GFDVDEPSFWYGRRIGSKKMGFEERT 65
           K +DGA    ++ LLE +A DD+S+FKREIEE    ++DE  FWY RR+GSKKMGFEERT
Sbjct: 23  KSEDGA---SATCLLEFAACDDLSSFKREIEENPSVEIDESGFWYCRRVGSKKMGFEERT 79

Query: 66  PIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASA 125
           P+M+AAM+GS+ VL Y+I TG+ +VNR C  +  TALHCAV+G + S  E++K+LL ASA
Sbjct: 80  PLMVAAMYGSMEVLNYIIATGRSDVNRVCSDEKVTALHCAVSGCSVSIVEIIKILLDASA 139

Query: 126 DVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLSKDGT 185
             NCVD  GNKPVDL+    +   +  ++A+E+LL G H    EEE   +         +
Sbjct: 140 SPNCVDANGNKPVDLLAKDSRFVPNQSRKAVEVLLTGIHGSVMEEEEEEL--------KS 191

Query: 186 EKKEYPIDVSLPDINNGVYGTDDFRMYAFKIKPCSRAYSHDWTECPFVHPGENARRRDPR 245
              +YP D SLPDIN GVYGTDDFRM++FK+KPCSRAYSHDWTECPFVHPGENARRRDPR
Sbjct: 192 VVTKYPADASLPDINEGVYGTDDFRMFSFKVKPCSRAYSHDWTECPFVHPGENARRRDPR 251

Query: 246 KYPYTCVPCPEFRKGACPKGDGCEYAHGVFESWLHPAQYRTRLCKDEIGCARKVCFFAHK 305
           KYPYTCVPCPEFRKG+CPKGD CEYAHGVFESWLHPAQYRTRLCKDE GCAR+VCFFAH+
Sbjct: 252 KYPYTCVPCPEFRKGSCPKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCARRVCFFAHR 311

Query: 306 PEELRPVYASTGSAMPSPSPVSASAVDMTTLSPLSLGSASMPLPATSTPPMSPLAAASSP 365
            +ELRPV ASTGSAM SP   + S  +M+ +SPL+LGS+ M  P  +  P+       SP
Sbjct: 312 RDELRPVNASTGSAMVSPRSSNQSP-EMSVMSPLTLGSSPMNSPMANGVPL-------SP 363

Query: 366 KSGNLWQNKVN-LTPPALQLPGSRLKTAFSARDLDLLL-----GLENRTSNLQQQQLLDE 419
           ++G LWQN+VN LTPP LQL GSRLK+  SARD+D+ +     GL+NR            
Sbjct: 364 RNGGLWQNRVNSLTPPPLQLNGSRLKSTLSARDMDMEMELRFRGLDNR------------ 411

Query: 420 ISSLSSPSSWSKEYSRIGDVN-RNLDKVFESLDPSMLSQLQGMSQKQSTPTQLQSPTGLQ 478
                          R+GD+   NL++ F S D + + QLQ  S+               
Sbjct: 412 ---------------RLGDLKPSNLEETFGSYDSASVMQLQSPSR--------------- 441

Query: 479 MRQNMNQLRASYPAANLSSSPVRKPSSFGYDSSAAVAAAVMNSRSSAFAKRSQSFIDRGA 538
               MN     YP     SSPVR+P   G++SSAA+AAAVMN+RSSAFAKRS SF     
Sbjct: 442 -HSQMNH----YP-----SSPVRQPPPHGFESSAAMAAAVMNARSSAFAKRSLSF----- 486

Query: 539 VTSRAGLSMVSNPPTIRSSNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNITTPT 598
                        P   +SN+SDW SP+GKL+WG+Q DELNKL++SASFG   NN  + +
Sbjct: 487 ------------KPAPVASNVSDWGSPNGKLEWGMQRDELNKLRRSASFGIHGNNNNSVS 534

Query: 599 TKGFTPSSSNVDEPDVSWVNSLVKDVTPE------GQGLFGA---EKQQYNPWMEQMYIE 649
                P+    DEPDVSWVNSLVK+  PE      G  + GA   +K +   W EQMYI+
Sbjct: 535 ----RPARDYSDEPDVSWVNSLVKENAPERVNERVGNTVNGAASRDKFKLPSWAEQMYID 590

Query: 650 QEQMVA 655
            EQ + 
Sbjct: 591 HEQQIV 596

Involved in salt stress response. May positively modulate plant tolerance to salt stress.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUZ4|C3H66_ARATH Zinc finger CCCH domain-containing protein 66 OS=Arabidopsis thaliana GN=At5g58620 PE=2 SV=1

 Score =  589 bits (1519), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 333/658 (50%), Positives = 426/658 (64%), Gaps = 78/658 (11%)

Query: 16  KSSILLELSASDDISAFKREIEEKGFD-VDEPSFWYGRRIGSKKMGFEERTPIMIAAMFG 74
           K S+LLE SA +D+S FK  +EE+G + +D    WYGRR+GSKKMGFEERTP+MIAA+FG
Sbjct: 10  KFSLLLESSACNDLSGFKSLVEEEGLESIDGSGLWYGRRLGSKKMGFEERTPLMIAALFG 69

Query: 75  SVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYG 134
           S  V+ Y+I TG V+VNR+CGSDG TALHCAV+G + +S E+V LLL  SA+ +  D YG
Sbjct: 70  SKEVVDYIISTGLVDVNRSCGSDGATALHCAVSGLSANSLEIVTLLLKGSANPDSCDAYG 129

Query: 135 NKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFE------EEELVNIPVPQLSKDGTEKK 188
           NKP D+I   +     +R + +E LLKG+  + E       E  V + V      G+E+K
Sbjct: 130 NKPGDVIFPCLSPVFSARMKVLERLLKGNDDLNEVNGQEESEPEVEVEVEVSPPRGSERK 189

Query: 189 EYPIDVSLPDINNGVYGTDDFRMYAFKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYP 248
           EYP+D +LPDI NGVYGTD+FRMYAFKIKPCSRAYSHDWTECPFVHPGENARRRDPRKY 
Sbjct: 190 EYPVDPTLPDIKNGVYGTDEFRMYAFKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYH 249

Query: 249 YTCVPCPEFRKGACPKGDGCEYAHGVFESWLHPAQYRTRLCKDEIGCARKVCFFAHKPEE 308
           Y+CVPCPEFRKG+C +GD CEYAHG+FE WLHPAQYRTRLCKDE  C+R+VCFFAHKPEE
Sbjct: 250 YSCVPCPEFRKGSCSRGDTCEYAHGIFECWLHPAQYRTRLCKDETNCSRRVCFFAHKPEE 309

Query: 309 LRPVYASTGSAMPSP-----SPVSASAVDMTTLSPLSLGSASMPLPATSTPPMSPLAAAS 363
           LRP+Y STGS +PSP     S  S++A DM  +SPL       P+ AT+TPP+SP   +S
Sbjct: 310 LRPLYPSTGSGVPSPRSSFSSCNSSTAFDMGPISPL-------PIGATTTPPLSPNGVSS 362

Query: 364 SPKSGNLWQNKVNLTPPALQLPGSRLKTAFSARDLDLLLGLENRTSNLQQQQLLDEISSL 423
               G  W N  N+TPPALQLPGSRLK+A +AR++D                  +E+ SL
Sbjct: 363 PIGGGKTWMNWPNITPPALQLPGSRLKSALNAREID----------------FSEEMQSL 406

Query: 424 SSPSSW-----SKEYSRIGDVNRNLDKVFESLDPSMLSQLQGMSQKQSTPTQLQSPTGLQ 478
           +SP++W     S  +S  G +NR        L    +S +  +S    T     + +GLQ
Sbjct: 407 TSPTTWNNTPMSSPFSGKG-MNR--------LAGGAMSPVNSLSDMFGTE---DNTSGLQ 454

Query: 479 MRQNMNQLRASYPAANLSSSPVRKPSSFGYDSSAAVAAAVMNSRSSAFAK-RSQSFIDRG 537
           +R+++  +     + +LSSSPV   S F  DSSA +A     SR++ FAK RSQSFI+R 
Sbjct: 455 IRRSV--INPQLHSNSLSSSPVGANSLFSMDSSAVLA-----SRAAEFAKQRSQSFIER- 506

Query: 538 AVTSRAGLSMVSNPPTIRSSNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNITTP 597
                 GL+      ++ ++ L+DW S DGKLDW VQGDEL KL+KS SF  R+  + + 
Sbjct: 507 ----NNGLNHHPAISSMTTTCLNDWGSLDGKLDWSVQGDELQKLRKSTSFRLRAGGMESR 562

Query: 598 TTKGFTPSSSNVDEPDVSWVNSLVKDVTPEGQGLFGAEKQQYNPWMEQMYIEQEQMVA 655
                    + ++EPDVSWV  LVK+  P+       E +    WMEQ Y+E EQ VA
Sbjct: 563 LPN----EGTGLEEPDVSWVEPLVKE--PQ-------ETRLAPVWMEQSYMETEQTVA 607

Arabidopsis thaliana (taxid: 3702)

>sp|Q93ZS9|C3H47_ARATH Zinc finger CCCH domain-containing protein 47 OS=Arabidopsis thaliana GN=At3g55980 PE=2 SV=1

 Score =  588 bits (1517), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 336/645 (52%), Positives = 415/645 (64%), Gaps = 101/645 (15%)

Query: 19  ILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAV 78
           +LLE +A DD+ +FKRE+EEKG D+DE   WY RR+GSKKMG EERTP+M+AAM+GS+ V
Sbjct: 29  LLLEFAACDDLDSFKREVEEKGLDLDESGLWYCRRVGSKKMGLEERTPLMVAAMYGSIKV 88

Query: 79  LKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPV 138
           L +++ TGK +VNRACG +  T LHCAVAG + +  EV+ +LL ASA VN VD  GN+P+
Sbjct: 89  LTFIVSTGKSDVNRACGEERVTPLHCAVAGCSVNMIEVINVLLDASALVNSVDANGNQPL 148

Query: 139 DLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLSKDGTEKKEYPIDVSLPD 198
           D+     +     R++A+ELLL+G       +E V   +  +SK       YP D SLPD
Sbjct: 149 DVFVRVSRFVASPRRKAVELLLRGGGVGGLIDEAVEEEIKIVSK-------YPADASLPD 201

Query: 199 INNGVYGTDDFRMYAFKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYTCVPCPEFR 258
           IN GVYG+D+FRMY+FK+KPCSRAYSHDWTEC FVHPGENARRRDPRKYPYTCVPCPEFR
Sbjct: 202 INEGVYGSDEFRMYSFKVKPCSRAYSHDWTECAFVHPGENARRRDPRKYPYTCVPCPEFR 261

Query: 259 KGACPKGDGCEYAHGVFESWLHPAQYRTRLCKDEIGCARKVCFFAHKPEELRPVYASTGS 318
           KG+CPKGD CEYAHGVFESWLHPAQY+TRLCKDE GCARKVCFFAHK EE+RPV ASTGS
Sbjct: 262 KGSCPKGDSCEYAHGVFESWLHPAQYKTRLCKDETGCARKVCFFAHKREEMRPVNASTGS 321

Query: 319 AMPSPSPVSASAVDMTTLSPLSLGSASMPLPATSTPPMSPLAAA--SSPKSGNLWQNKVN 376
           A+ + SP S+  + M  LSPL+  S        STPP+SP+A    SSP++G  WQN+VN
Sbjct: 322 AV-AQSPFSSLEM-MPGLSPLAYSS------GVSTPPVSPMANGVPSSPRNGGSWQNRVN 373

Query: 377 -LTPPALQLP-GSRLKTAFSARDLDLLLGLENRTSNLQQQQLLDEISSLSSPSSWSKEYS 434
            LTPPALQL  GSRLK+  SARD+D+ + +E                             
Sbjct: 374 TLTPPALQLNGGSRLKSTLSARDIDMEMEME----------------------------L 405

Query: 435 RIGDVNRNLDKVFESLDPSMLSQLQGMSQKQSTPTQLQSPTGLQMRQNMNQLRASYPAAN 494
           R+     N+++ F S                S+P++       QM QNMNQ    YP   
Sbjct: 406 RLRGFGNNVEETFGSY--------------VSSPSR-----NSQMGQNMNQ---HYP--- 440

Query: 495 LSSSPVRK-PSSFGYDSSAAVAAAVMNSRSSAFAKRSQSFIDRGAVTSRAGLSMVSNPPT 553
             SSPVR+ PS  G++SSAA A AVM +RS+AFAKRS SF                 P T
Sbjct: 441 --SSPVRQPPSQHGFESSAAAAVAVMKARSTAFAKRSLSF----------------KPAT 482

Query: 554 IRS--SNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNITTPTTKGFTPSSSNVDE 611
             +  SNLSDW SP+GKL+WG++G+ELNK+++S SFG   NN           +    DE
Sbjct: 483 QAAPQSNLSDWGSPNGKLEWGMKGEELNKMRRSVSFGIHGNNNN-------NAARDYRDE 535

Query: 612 PDVSWVNSLVKDVTPEGQGLFGA-EKQQYNPWMEQMYIEQEQMVA 655
           PDVSWVNSLVKD T   +  FG  E+ +   W EQMY E+EQ V 
Sbjct: 536 PDVSWVNSLVKDSTVVSERSFGMNERVRIMSWAEQMYREKEQTVV 580

Involved in salt stress response. May positively modulate plant tolerance to salt stress.

Arabidopsis thaliana (taxid: 3702)

>sp|Q688R3|C3H33_ORYSJ Zinc finger CCCH domain-containing protein 33 OS=Oryza sativa subsp. japonica GN=Os05g0128200 PE=2 SV=1

 Score =  445 bits (1144), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 280/628 (44%), Positives = 355/628 (56%), Gaps = 80/628 (12%)

Query: 37  EEKGFDVDEPSFWYGRRI-GSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACG 95
           EE+   +     WYG    G  ++G E RT  M+AA++GS  VL YV+        RA  
Sbjct: 45  EEEKVSLGVAGLWYGPSASGVARLGMERRTAAMVAALYGSTGVLGYVVAAAPAEAARASE 104

Query: 96  SDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRA 155
           +DG T LH A AGGA ++    +LLL+A A V+ +   G +  DL+P A  +     ++A
Sbjct: 105 TDGATPLHMAAAGGAANAVAATRLLLAAGASVDALSASGLRAGDLLPRATAA-----EKA 159

Query: 156 IELLLKGDHTIFEEEELVNIPVPQLSKDGTEKKEYPIDVSLPDINNGVYGTDDFRMYAFK 215
           I LLLK            +   P        KKEYP D++LPD+ +G++ TD+FRMY+FK
Sbjct: 160 IRLLLKSPAVSPSSSPKKSASPPSPPPPQEAKKEYPPDLTLPDLKSGLFSTDEFRMYSFK 219

Query: 216 IKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYTCVPCPEFRK-GACPKGDGCEYAHGV 274
           +KPCSRAYSHDWTECPFVHPGENARRRDPR+Y Y+CVPCPEFRK G+C KGD CEYAHGV
Sbjct: 220 VKPCSRAYSHDWTECPFVHPGENARRRDPRRYSYSCVPCPEFRKGGSCRKGDACEYAHGV 279

Query: 275 FESWLHPAQYRTRLCKDEIGCARKVCFFAHKPEELRPVYASTGSAMPSPSPVSASAVDMT 334
           FE WLHPAQYRTRLCKDE+GCAR++CFFAHKP+ELR V         +PS VS   V M 
Sbjct: 280 FECWLHPAQYRTRLCKDEVGCARRICFFAHKPDELRAV---------NPSAVS---VGMQ 327

Query: 335 TLSPLSLGSASMPLPATSTPPMSPLAAASSPKSGNLWQNKVNLTPPAL-QLPGSRLKTAF 393
                         P  S+P  SP      P   ++      +  PA    P SRLKTA 
Sbjct: 328 --------------PTVSSPRSSP------PNGLDMAAAAAAMMSPAWPSSPASRLKTAL 367

Query: 394 SARDLDLLLGLENRTSNLQQQQLLDEISSLSSP-SSWSKEYSRIGDVN-----RNLDKVF 447
            AR+LD    LE    +  QQ+L D++S   SP +SW    + +   +      +   + 
Sbjct: 368 GARELD--FDLEMLALDQYQQKLFDKVSGAPSPRASWGAAANGLATASPARAVPDYTDLL 425

Query: 448 ESLDPSMLSQLQGMSQKQSTPTQLQSPTGLQMRQNMNQLRASYPAANLSSSPVRKPSSFG 507
            S+DP+MLSQL  +S KQ+       P    M         + P    ++      ++FG
Sbjct: 426 GSVDPAMLSQLHALSLKQAG----DMPAYSSMADTTQMHMPTSPMVGGAN------TAFG 475

Query: 508 YDSSAAVAAAVMNSRSSAFAKRSQSFIDRGAVTSRAGLSMVSNPPTIRSSNLSDWSSPDG 567
            D S  +A A+M+SR+SAFAKRSQSFIDRG   + A  S++S   T   S LSDW SPDG
Sbjct: 476 LDHS--MAKAIMSSRASAFAKRSQSFIDRGG-RAPAARSLMSPATTGAPSILSDWGSPDG 532

Query: 568 KLDWGVQGDELNKLKKSASFGFRSNNITTPTTKGFTPSSSNVDEPDVSWVNSLVKDVTPE 627
           KLDWGVQGDEL+KL+KSASF FR  +     T       +   EPDVSWVNSLVKD    
Sbjct: 533 KLDWGVQGDELHKLRKSASFAFRGQSAMPVATH------AAAAEPDVSWVNSLVKDGHAA 586

Query: 628 GQGLFGAEKQQYNPWMEQMYIEQEQMVA 655
           G  +F              + EQEQMVA
Sbjct: 587 GD-IFA------------QWPEQEQMVA 601

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P93755|C3H30_ARATH Zinc finger CCCH domain-containing protein 30 OS=Arabidopsis thaliana GN=At2g41900 PE=1 SV=2

 Score =  433 bits (1114), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 287/713 (40%), Positives = 378/713 (53%), Gaps = 132/713 (18%)

Query: 20  LLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVL 79
           LLEL+A++D+   +  IE     VDE   WYGR+ GSK M  + RTP+M+AA +GS+ V+
Sbjct: 48  LLELAANNDVEGVRLSIERDPSCVDEAGLWYGRQKGSKAMVNDYRTPLMVAATYGSIDVI 107

Query: 80  KYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVD 139
           K ++     +VNRACG+D  TALHCA +GGA ++ +VVKLLL+A AD+N +D  G +  D
Sbjct: 108 KLIVSLTDADVNRACGNDQTTALHCAASGGAVNAIQVVKLLLAAGADLNLLDAEGQRAGD 167

Query: 140 LIPVAMKSPLHSRKRAIELLLKGDHTIFEEEEL---VNIP----VPQLSKDG-------- 184
           +I V  K  L   K  ++ LL  D +   E  L    N+P     P  S  G        
Sbjct: 168 VIVVPPK--LEGVKLMLQELLSADGSSTAERNLRVVTNVPNRSSSPCHSPTGENGGSGSG 225

Query: 185 -----------TE-KKEYPIDVSLPDINNGVYGTDDFRMYAFKIKPCSRAYSHDWTECPF 232
                      TE KKEYP+D SLPDI N +Y TD+FRMY+FK++PCSRAYSHDWTECPF
Sbjct: 226 SPLGSPFKLKSTEFKKEYPVDPSLPDIKNSIYATDEFRMYSFKVRPCSRAYSHDWTECPF 285

Query: 233 VHPGENARRRDPRKYPYTCVPCPEFRKGACPKGDGCEYAHGVFESWLHPAQYRTRLCKDE 292
           VHPGENARRRDPRK+ Y+CVPCP+FRKGAC +GD CEYAHGVFE WLHPAQYRTRLCKD 
Sbjct: 286 VHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDG 345

Query: 293 IGCARKVCFFAHKPEELRPVYASTGSAMPSPSPVSASAVDMTTLSPLSLGSASMPLPATS 352
            GCAR+VCFFAH PEELRP+YASTGSA+PSP   +  A  ++ L     G + M      
Sbjct: 346 TGCARRVCFFAHTPEELRPLYASTGSAVPSPRSNADYAAALSLLPGSPSGVSVM------ 399

Query: 353 TPPMSPLAAASSPKSGNLWQNKVNLTPPALQLPG-----SRLKTAFSARDLDLLLGLENR 407
             P+SP AA +     N+   + N+  PAL LPG     SRL+++ +ARD+       N 
Sbjct: 400 -SPLSPSAAGNGMSHSNMAWPQPNV--PALHLPGSNLQSSRLRSSLNARDIP--TDEFNM 454

Query: 408 TSNLQQQQLLDEISSLSSPSSWSKEYSRIGDVNRNLDKVFESLDPSMLSQL---QGMSQK 464
            ++ +QQQLL+E         +S   SR G +        +S+ PS L  L   +G S  
Sbjct: 455 LADYEQQQLLNE---------YSNALSRSGRM--------KSMPPSNLEDLFSAEGSSSP 497

Query: 465 QSTPTQLQ----SPTGLQMRQNMNQLRASYPAANLS------SSPVRKPSSF----GYDS 510
           + T + L     SPT      N  Q +     + LS      SSP     S     G  S
Sbjct: 498 RFTDSALASAVFSPTHKSAVFNQFQQQQQQQQSMLSPINTSFSSPKSVDHSLFSGGGRMS 557

Query: 511 SAAVAAAV--MNSRSSAFAK-------------RSQSFIDRGAVTSRAGLSMVSNPPTIR 555
              V   +  M++R S  A+             +   F    +   R   S +   P   
Sbjct: 558 PRNVVEPISPMSARVSMLAQCVKQQQQQQQQQQQQHQFRSLSSRELRTNSSPIVGSPVNN 617

Query: 556 SSNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNITTPTTKGFTPSSSNVDEPDVS 615
           ++  S W S +G+ DWG+  + L KL+ S+SF                    + DEPDVS
Sbjct: 618 NTWSSKWGSSNGQPDWGMSSEALGKLRSSSSF--------------------DGDEPDVS 657

Query: 616 WVNSLVKDVTPEGQGLFGAEK------QQYNP------------WMEQMYIEQ 650
           WV SLVK+   E +             +Q NP            W+EQM ++Q
Sbjct: 658 WVQSLVKETPAEAKEKAATSSSGEHVMKQPNPVEPVMDHAGLEAWIEQMQLDQ 710

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXV4|C3H56_ARATH Zinc finger CCCH domain-containing protein 56 OS=Arabidopsis thaliana GN=At5g12850 PE=2 SV=1

 Score =  422 bits (1086), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 272/671 (40%), Positives = 370/671 (55%), Gaps = 98/671 (14%)

Query: 8   LKDGALYNKS-SILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTP 66
           + D A +  S S LLE +A +D+  F+R++ +    +++   WY R+   ++M  E+RTP
Sbjct: 29  MNDAAEWEHSFSALLEFAADNDVEGFRRQLSDVSC-INQMGLWYRRQRFVRRMVLEQRTP 87

Query: 67  IMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASAD 126
           +M+A+++GS+ V+K+++   +  +N +CG D  TALHCA +G + +S +VVKLLLS  AD
Sbjct: 88  LMVASLYGSLDVVKFILSFPEAELNLSCGPDKSTALHCAASGASVNSLDVVKLLLSVGAD 147

Query: 127 VNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEE----------------- 169
            N  D +GN+PVD++ V+  +P    +  +E +LK D  I E+                 
Sbjct: 148 PNIPDAHGNRPVDVLVVSPHAP--GLRTILEEILKKDEIISEDLHASSSSLGSSFRSLSS 205

Query: 170 ----------EELVNIPVPQLSKDGT---EKKEYPIDVSLPDINNGVYGTDDFRMYAFKI 216
                      + V+ P      D T   EKKEYPID SLPDI +G+Y TD+FRM++FKI
Sbjct: 206 SPDNGSSLLSLDSVSSPTKPHGTDVTFASEKKEYPIDPSLPDIKSGIYSTDEFRMFSFKI 265

Query: 217 KPCSRAYSHDWTECPFVHPGENARRRDPRKYPYTCVPCPEFRKGACPKGDGCEYAHGVFE 276
           +PCSRAYSHDWTECPF HPGENARRRDPRK+ YTCVPCP+F+KG+C +GD CEYAHGVFE
Sbjct: 266 RPCSRAYSHDWTECPFAHPGENARRRDPRKFHYTCVPCPDFKKGSCKQGDMCEYAHGVFE 325

Query: 277 SWLHPAQYRTRLCKDEIGCARKVCFFAHKPEELRPVYASTGSAMPSP---SPVSASAVDM 333
            WLHPAQYRTRLCKD +GC R+VCFFAH  EELRP+Y STGS +PSP   S VSAS +DM
Sbjct: 326 CWLHPAQYRTRLCKDGMGCNRRVCFFAHANEELRPLYPSTGSGLPSPRASSAVSASTMDM 385

Query: 334 TTLSPLSLGSASMPLPATSTPPMSPLAAASSPKSGNLWQNKVNLTPPALQLPG-----SR 388
            ++  +  GS S     + TPP+SP    S P S   W  + N+  PAL LPG     SR
Sbjct: 386 ASVLNMLPGSPSA-AQHSFTPPISPSGNGSMPHSSMGWPQQ-NI--PALNLPGSNIQLSR 441

Query: 389 LKTAFSARDLDLLLGLENRTSNLQQQQLLDEISSLSSPSSWSKEYSRIGDVN-RNLDKVF 447
           L+++ +ARD+        + S L + ++  +++       +    +R   +N  NL+++F
Sbjct: 442 LRSSLNARDIP-----SEQLSMLHEFEMQRQLAGDMHSPRFMNHSARPKTLNPSNLEELF 496

Query: 448 --ESLDPSMLSQLQGMSQKQSTPTQLQSPTG----LQMRQNMNQLRASYPAANLSSSP-- 499
             E   P    QL   S        + SP+     L   QN  Q   S    NL SSP  
Sbjct: 497 SAEVASPRFSDQLAVSS--------VLSPSHKSALLNQLQNNKQSMLSPIKTNLMSSPKN 548

Query: 500 VRKPSSFGYDSSAAVAAAV--MNSR-SSAFAKRSQSFIDRGAVTSRAGLSMVSNPPTIRS 556
           V + S     SS      +  MN+R       RS S  D G+   R  +      PT   
Sbjct: 549 VEQHSLLQQASSPRGGEPISPMNARMKQQLHSRSLSSRDFGSSLPRDLM------PTDSG 602

Query: 557 SNLSDWSSPD----GKLDWGVQGDELNKLKKSASFGFRSNNITTPTTKGFTPSSSNVDEP 612
           S LS WSS D     K+DW VQ DEL +L+KS S     N                  E 
Sbjct: 603 SPLSPWSSWDQTHGSKVDWSVQSDELGRLRKSHSLANNPNR-----------------EA 645

Query: 613 DVSWVNSLVKD 623
           DVSW   ++KD
Sbjct: 646 DVSWAQQMLKD 656

Arabidopsis thaliana (taxid: 3702)

>sp|Q10EL1|C3H24_ORYSJ Zinc finger CCCH domain-containing protein 24 OS=Oryza sativa subsp. japonica GN=Os03g0698800 PE=2 SV=1

 Score =  402 bits (1033), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 285/684 (41%), Positives = 364/684 (53%), Gaps = 122/684 (17%)

Query: 20  LLELSASDDISAFKREIEEKG-FDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAV 78
           LLEL+A DD    +R +E       DE   WYGRR        E RTP+M+AA +GS+AV
Sbjct: 70  LLELAADDDAEGLRRALERAPPAAADEAGLWYGRR-----KVLEHRTPLMVAATYGSLAV 124

Query: 79  LKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPV 138
           L+ ++    V+VNR CGSDG TALHCA +GG+ S  E VKLLL+A AD +  D  G +P 
Sbjct: 125 LRLLLSLPSVDVNRRCGSDGTTALHCAASGGSPSCVEAVKLLLAAGADADATDASGYRPA 184

Query: 139 DLIPVAMKSPLHSRKRAIELLL---KGDHTIF-------------------EEEELVNIP 176
           D+I V  K  +   K A++ LL   K  H +                    E+    +  
Sbjct: 185 DVISVPPK--MFDAKIALQDLLGCPKAGHGVLRVVTRAANSMLSPVSSPTAEDARSPSAA 242

Query: 177 VPQLSKDG-------TEKKEYPIDVSLPDINNGVYGTDDFRMYAFKIKPCSRAYSHDWTE 229
           V   +K         +EKKEYP+D SLPDI N +Y +D+FRMY+FKI+PCSRAYSHDWTE
Sbjct: 243 VMMTTKFADLPRVVTSEKKEYPVDPSLPDIKNSIYASDEFRMYSFKIRPCSRAYSHDWTE 302

Query: 230 CPFVHPGENARRRDPRKYPYTCVPCPEFRKGACPKGDGCEYAHGVFESWLHPAQYRTRLC 289
           CPFVHPGENARRRDPRKY Y+CVPCP+FRKG C +GD CEYAHGVFE WLHPAQYRTRLC
Sbjct: 303 CPFVHPGENARRRDPRKYHYSCVPCPDFRKGVCRRGDMCEYAHGVFECWLHPAQYRTRLC 362

Query: 290 KDEIGCARKVCFFAHKPEELRPVYASTGSAMPSPSPVSASAVDMTTLSPLSLGSASMPLP 349
           KD   C R+VCFFAH  +ELRP+Y STGSA+PSP   + + ++M     L  GS S    
Sbjct: 363 KDGTSCNRRVCFFAHTTDELRPLYVSTGSAVPSPRASATATMEMAAAMGLMPGSPSSVSA 422

Query: 350 ATS--TPPMSPLAAASSPKSGNLWQNKVNLTPPALQLPG-----SRLKTAFSARDLDLLL 402
             S  TPPMSP      P  G  WQ + N+  P L LPG     SRL+T+ SARD+    
Sbjct: 423 VMSPFTPPMSPSGNGMPPSLG--WQ-QPNV--PTLHLPGSSLQSSRLRTSLSARDMP--- 474

Query: 403 GLENRTSNLQ--QQQLLDEISSLSSPSSWSKEYSRIGDVNRNLDKVFESLDPSMLSQL-- 458
              +  S +Q    QL++++            YSRIG    N     +SL+PS L  L  
Sbjct: 475 --ADDYSLMQDIDSQLINDLC-----------YSRIGSSTGNHTSRTKSLNPSNLDDLFS 521

Query: 459 -------------QG-----------MSQKQSTPTQLQSP--TGLQMRQNMNQLRASYPA 492
                        QG           ++Q Q     L SP  T    +   NQ   S+ +
Sbjct: 522 AEMVSSPRYSNADQGGMFSPSHKAAFLNQFQQQQQALLSPINTVFSPKSVDNQQLPSHSS 581

Query: 493 ANLSSSPVRKPSSF-------GYDSSAAVAAAVMNSRSSAFAKRSQSFIDRGAVTSRAGL 545
              +S  +  P          G   ++ +AAA+          RS S  D G   +RA  
Sbjct: 582 LLQASLGISSPGRMSPRCVESGSPMNSHLAAALAQREKQQQTMRSLSSRDLGPSAARAS- 640

Query: 546 SMVSNPPTIRSSNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNITTPTTKGFTPS 605
            +V +P    SS+ S W SP G  DWGV G+EL KL++S+SF  RS              
Sbjct: 641 GVVGSP---LSSSWSKWGSPSGTPDWGVNGEELGKLRRSSSFELRSGG------------ 685

Query: 606 SSNVDEPDVSWVNSLVKDVTPEGQ 629
               D+PD+SWV++LVK+  PE Q
Sbjct: 686 ----DDPDLSWVHTLVKESPPEKQ 705

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q84SL2|C3H50_ORYSJ Zinc finger CCCH domain-containing protein 50 OS=Oryza sativa subsp. japonica GN=Os07g0568300 PE=2 SV=1

 Score =  352 bits (903), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 246/686 (35%), Positives = 339/686 (49%), Gaps = 123/686 (17%)

Query: 27  DDISAFKREIEEKGFDV----DEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYV 82
           DD+   +  + E G +     D    WYGR        +E RTP+M+AA +GS  V+  +
Sbjct: 34  DDVDGLRGALAEGGEEAAELADGVGLWYGR-----SKAYEARTPLMVAATYGSAGVVSLL 88

Query: 83  IETGK-VNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLI 141
           +  G  V+VNR  G+DG TALHCA +GG+ ++  VVKLLL+A AD    D  G  P D+I
Sbjct: 89  VGLGGCVDVNRRPGADGATALHCAASGGSRNAVAVVKLLLAAGADPATPDSAGRFPADVI 148

Query: 142 PVAMKSP--------LHSRKRAIELLLK--------GDHTIFEEEELVNIPVPQLSKDGT 185
                SP        L  R+RA+ +              +  +E               T
Sbjct: 149 LAPPASPDALGDLEVLLGRRRALAVATSVASGSSSPPLSSSPDEGNRSPSSRSSSLSPIT 208

Query: 186 ---EKKEYPIDVSLPDINNGVYGTDDFRMYAFKIKPCSRAYSHDWTECPFVHPGENARRR 242
               KKEYP+D +LPDI + VY +D+FRM+AFK++PCSRAYSHDWTECPFVHPGENARRR
Sbjct: 209 VDRGKKEYPVDPTLPDIKSSVYASDEFRMFAFKVRPCSRAYSHDWTECPFVHPGENARRR 268

Query: 243 DPRKYPYTCVPCPEFRK-GACPKGDGCEYAHGVFESWLHPAQYRTRLCKDEIGCARKVCF 301
           DPRK+PYT VPCP FR+ G CP GD CE++HGVFESWLHP+QYRTRLCK+   CAR++CF
Sbjct: 269 DPRKHPYTAVPCPNFRRPGGCPSGDSCEFSHGVFESWLHPSQYRTRLCKEGAACARRICF 328

Query: 302 FAHKPEELRPVYASTGSAMPSPSPVSASAVDMTTLSPLSLGSASMPLPATSTPPMSPLAA 361
           FAH  +ELR V  ++G+ + SP   ++S++DMT  + L L   S P    + PP+SP A 
Sbjct: 329 FAHDEDELRHVPHNSGAGLLSPR--ASSSIDMTAAAALGLLPGS-PTRHFAPPPVSPSAG 385

Query: 362 ASSPKSGNLWQNKVNLTPPALQLPGSRLKTAFSARDL---DLLLGLENRTSNLQQQQLLD 418
           ++   +   W            L GSRL+++F+ARD    DL + LE  +  L    L  
Sbjct: 386 SNGGAAAAHW------------LQGSRLRSSFNARDAAVDDLGMLLEWESQYL--GALCL 431

Query: 419 EISSLSSPSSWSKEYSRIGDVNRNLDKVFESLDPSMLSQL---QGMS-----QKQSTPTQ 470
             SS   P   +    R      NL+ ++ S D +M  +    QG S      K +   +
Sbjct: 432 PPSSRPQPRLSAGLSIRPTIAPSNLEDMYAS-DMAMSPRFPNDQGHSVYSPAHKSALLNK 490

Query: 471 LQSPTGLQMRQNMNQLRASYPAANLSSSPVRKPSSFGYDSSAAVAAAVMNSRSSAFAKRS 530
           L    GL    N N++                     Y   A   +++ +S     + RS
Sbjct: 491 LHQQKGLLSPVNTNRM---------------------YSPRALDPSSLAHSPFGGMSPRS 529

Query: 531 QSFID-RGAVTSRAGLSMVSNPPTIRSSNLSDW---SSPDGKLDWGVQGDELNKLKKSAS 586
              ++    +++R G      P      N S W    SP GK+DWGV  +EL +L++ A 
Sbjct: 530 PRTMEPTSPLSARVGAPATQRPSVGSPRNSSAWGTVGSPMGKVDWGVDSEELVRLRRPAQ 589

Query: 587 FGFRSNNITTPTTKGFTPSSSNVDEPDVSWVNSLVKDVTPEG-----QGLFGAEKQQYNP 641
            GF                    DE DVSWV SLV +    G     QG+ G       P
Sbjct: 590 PGF------------------GEDETDVSWVQSLVSNAELNGKRGEVQGMPGTSALMNRP 631

Query: 642 ----------------WMEQMYIEQE 651
                           W+EQM+++Q+
Sbjct: 632 DLNNQGDLLDQTVIGAWLEQMHLDQK 657

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q2QPW2|C3H67_ORYSJ Zinc finger CCCH domain-containing protein 67 OS=Oryza sativa subsp. japonica GN=Os12g0515500 PE=2 SV=1

 Score =  351 bits (901), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 251/638 (39%), Positives = 334/638 (52%), Gaps = 94/638 (14%)

Query: 11  GALYNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIA 70
           GA    S+ LLEL+A D+ +     +       DEP+ WY     +   G E  TP+M+A
Sbjct: 6   GAEAAVSARLLELAADDNAAGLGELLAAWPSLADEPAPWY-----TPARGAEPLTPLMVA 60

Query: 71  AMFGSVAVLKYVIETGK-VNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNC 129
           A++GSV  L  ++     V+ NRA  S   T LH A AGG+ S+   V  LL+A AD   
Sbjct: 61  AVYGSVGCLDALLSPPYLVDPNRASASSLSTPLHLAAAGGSASAPAAVSRLLAAGADPAL 120

Query: 130 VDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLSKDGTEKKE 189
           +D                  H ++RA +L+    +++  +  L+++           +KE
Sbjct: 121 LD------------------HLQRRASDLVALPPNSLPLKNHLLSL--------LGARKE 154

Query: 190 YPIDVSLPDINNGVYGTDDFRMYAFKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYPY 249
           +P D SLPDI NG Y +DDFRMY+FK++ CSRAYSHDWTECPFVHPGENARRRDPRKY Y
Sbjct: 155 WPPDPSLPDIKNGAYASDDFRMYSFKVRACSRAYSHDWTECPFVHPGENARRRDPRKYHY 214

Query: 250 TCVPCPEFRKGA-CPKGDGCEYAHGVFESWLHPAQYRTRLCKDEIGCARKVCFFAHKPEE 308
           +CVPCPEF+KGA C +GD CEYAHGVFESWLHPAQYRTRLCKD +GCAR+VCFFAH P+E
Sbjct: 215 SCVPCPEFKKGAGCRRGDMCEYAHGVFESWLHPAQYRTRLCKDGVGCARRVCFFAHTPDE 274

Query: 309 LRPVYASTGSAMPSPSPVSASAVDMTTLSPLSLGSASMPLPATSTPPMSPLAAASSPKSG 368
           LRP+Y STGSA+PSP      A              S P  ++ TPP+SP A       G
Sbjct: 275 LRPLYVSTGSAVPSPRGALEMAAAAAA----MGMGLSSPGSSSFTPPLSPSAGGGGGGGG 330

Query: 369 NL-----WQNKVNLTPPALQLPG-------SRLKTAFSARDL--DLLLGLENRTSNLQQQ 414
                  W  + ++  PAL LPG       SRL+T+ SARD+  D LL            
Sbjct: 331 GSGGGGAWPQQPSV--PALCLPGSAGNLHLSRLRTSLSARDMAVDELL--------AAAA 380

Query: 415 QLLDEISSLSSPSSWSKEYSRIGDVNRNLDKVFESLDPSMLSQLQGMSQKQSTPTQLQ-- 472
              D    ++SP+S      +   V  NLD++F        ++L   +  +S     Q  
Sbjct: 381 AAADYDGLVASPASIRSARGK-ALVPSNLDELFS-------AELAAAAASRSPRYADQGG 432

Query: 473 ---SPTGLQMRQNMNQLRASYPAANLSSSPVRKPSSFGYDSSAAVAAAVMNSRSSAFAKR 529
              SPT      N  QL+  +   +  ++ V  P      SS  +AA     +      R
Sbjct: 433 AAFSPTRKATVLNQFQLQQQHSLLSPRAAAV-TPEPVSPMSSRLLAALAQREKMQQQTLR 491

Query: 530 SQSFIDRGAVTSRAGLSMVSNPPTIRSSNLSDWSSPDGKLDWGVQGDELNKLKKSASFGF 589
           S S  D G   S     +V +P    SS++S W  P G  DWG   +EL +LK+ +SF  
Sbjct: 492 SMSSRDLGNAASL----LVGSP---VSSSMSKWGFPSGNPDWGADDEELGRLKRCSSFEL 544

Query: 590 RSNNITTPTTKGFTPSSSNVDEPDVSWVNSLVKDVTPE 627
           RS             +++   EPD+SWVN+LVK+ TPE
Sbjct: 545 RSG------------AANGNHEPDLSWVNTLVKEPTPE 570

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9M0G2|C3H49_ARATH Zinc finger CCCH domain-containing protein 49 OS=Arabidopsis thaliana GN=At4g29190 PE=2 SV=1

 Score =  187 bits (475), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 96/195 (49%), Positives = 125/195 (64%), Gaps = 17/195 (8%)

Query: 180 LSKDGTEKKEYPIDVSLPDINNGVYGTDDFRMYAFKIKPCSRAYSHDWTECPFVHPGENA 239
           L  +  + + YP D+  PD     Y  D FRMY FK++ C+R  SHDWTECP+ HPGE A
Sbjct: 52  LPSNEPDPESYP-DLLGPDSPIDAYSCDHFRMYDFKVRRCARGRSHDWTECPYAHPGEKA 110

Query: 240 RRRDPRKYPYTCVPCPEFRKGACPKGDGCEYAHGVFESWLHPAQYRTRLCKDEIGCARKV 299
           RRRDPRKY Y+   CP+FRKG C KGD CE+AHGVFE WLHPA+YRT+ CKD   C RK+
Sbjct: 111 RRRDPRKYHYSGTACPDFRKGGCKKGDSCEFAHGVFECWLHPARYRTQPCKDGGNCLRKI 170

Query: 300 CFFAHKPEELRPVYASTGSAMPS---PSPVSASAVDMTTLSPLSLGSASMPLPATSTPPM 356
           CFFAH P++LR ++  +   + S    SP+ A A  + ++SP+S            +PPM
Sbjct: 171 CFFAHSPDQLRFLHTRSPDRVDSFDVSSPIRARAFQL-SISPVS-----------GSPPM 218

Query: 357 SPLA-AASSPKSGNL 370
           SP A + SSP + +L
Sbjct: 219 SPRADSESSPMTQSL 233

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	655
147791077	674	hypothetical protein VITISV_014472 [Viti	0.992	0.964	0.698	0.0
225448453	689	PREDICTED: zinc finger CCCH domain-conta	0.992	0.943	0.696	0.0
356552713	680	PREDICTED: zinc finger CCCH domain-conta	0.966	0.930	0.684	0.0
171452362	661	transcription factor [Bruguiera gymnorhi	0.981	0.972	0.702	0.0
449507792	683	PREDICTED: zinc finger CCCH domain-conta	0.984	0.944	0.697	0.0
449460904	683	PREDICTED: zinc finger CCCH domain-conta	0.984	0.944	0.696	0.0
302398711	665	C3HL domain class transcription factor [	0.952	0.938	0.671	0.0
357492731	668	Zinc finger CCCH domain-containing prote	0.966	0.947	0.664	0.0
224112487	612	predicted protein [Populus trichocarpa]	0.880	0.942	0.665	0.0
224098638	599	predicted protein [Populus trichocarpa]	0.859	0.939	0.647	0.0

>gi|147791077|emb|CAN68018.1| hypothetical protein VITISV_014472 [Vitis vinifera]

 Score =  920 bits (2378), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/679 (69%), Positives = 548/679 (80%), Gaps = 29/679 (4%)

Query: 1   MEGGLPKLKDGALYNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMG 60
           MEG  P   DG + +K S+LLELSASDD+ +F+ E+EEKG +VD+P FWYGRR+GSKKMG
Sbjct: 1   MEGKSPNQXDG-ISSKCSVLLELSASDDLKSFRCEVEEKGMEVDKPGFWYGRRLGSKKMG 59

Query: 61  FEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLL 120
           FEERTP+ IAAMFGS  VLKY+IETGKV+VNRACGSD  TALHCA AGG+ SS EVVKLL
Sbjct: 60  FEERTPLSIAAMFGSTEVLKYIIETGKVDVNRACGSDQVTALHCAAAGGSVSSLEVVKLL 119

Query: 121 LSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQL 180
           L ASAD NCVD  GNKPVD+I  A+KS  +SR+RA E+LL+GD  I  EEE      PQL
Sbjct: 120 LDASADANCVDCNGNKPVDMIAPALKSSCNSRRRATEMLLRGDQVIELEEEQQPSTAPQL 179

Query: 181 SKDGTEKKEYPIDVSLPDINNGVYGTDDFRMYAFKIKPCSRAYSHDWTECPFVHPGENAR 240
           SK+G+EKKEYPID+SLPDINNG+YGTD+FRMY FK+KPCSRAYSHDWTECPFVHPGENAR
Sbjct: 180 SKEGSEKKEYPIDISLPDINNGIYGTDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENAR 239

Query: 241 RRDPRKYPYTCVPCPEFRKGACPKGDGCEYAHGVFESWLHPAQYRTRLCKDEIGCARKVC 300
           RRDP+K+PY+CVPCPE+RKG+C KGD CEYAHGVFE WLHPAQYRTRLCKDE GC+RKVC
Sbjct: 240 RRDPKKFPYSCVPCPEYRKGSCQKGDSCEYAHGVFECWLHPAQYRTRLCKDETGCSRKVC 299

Query: 301 FFAHKPEELRPVYASTGSAMPSPSPVSASAVDMTTLSPLSLGSASMPLPATSTPPM---- 356
           FFAHKPEELRP+YASTGSAMPSP  +SASAVDM TLSPL+LGS+++ LP TS+  +    
Sbjct: 300 FFAHKPEELRPLYASTGSAMPSPRSLSASAVDMATLSPLTLGSSALLLPPTSSSLLLPPT 359

Query: 357 -----SPLAAASSPKSGNLWQNKVNLTPPALQLPGSRLKTAFSARDLDLLLGLENRTSNL 411
                SP A +SSPKS  +WQNKVN TPP+LQLPGSRLK+A SARDL+L L L    S L
Sbjct: 360 STPPMSPSAVSSSPKSSGMWQNKVNFTPPSLQLPGSRLKSALSARDLELELELLELESQL 419

Query: 412 QQQQLLDEISSLSSPSSWSKEYSRIGDVN-RNLDKVFESLDPSMLSQLQGMSQKQSTPT- 469
             +QL+DE+SSLSSPS W+KE+SRIG++   NLD +F S DPS+LSQLQG+S K +TP  
Sbjct: 420 THKQLMDEMSSLSSPSCWNKEFSRIGELKPTNLDDMFGSFDPSVLSQLQGLSLKATTPQL 479

Query: 470 ---QLQSPTGLQMRQNMNQLRASYPA-ANLSSSPVRKPSSFGYDSSAAVAAAVMNSRSSA 525
              QLQSPTGLQMRQNMNQ RASYP    ++SSPVRK SS+G+DSSAAVAAAVMNSRSSA
Sbjct: 480 QSPQLQSPTGLQMRQNMNQQRASYPTKTTVTSSPVRKTSSYGFDSSAAVAAAVMNSRSSA 539

Query: 526 FAKRSQSFIDRGAVTSRA-GLSMVSNPPTIRSSNLSDWSSPDGKLDWGVQGDELNKLKKS 584
           FAKRSQSFIDRG ++ R+ G +  SN  T+ SSNLSDWSSPDGKLDWG+QGDELNKLKKS
Sbjct: 540 FAKRSQSFIDRGGMSHRSPGFTAASNSATLMSSNLSDWSSPDGKLDWGIQGDELNKLKKS 599

Query: 585 ASFGFRSNNITTPTTKGFTPSSSNVDEPDVSWVNSLVKDVTPEGQGLFGAEKQQYN---- 640
           ASFGFR+NN  T T        ++ DEPDVSWVNSLVKDV     GLFG++++ Y     
Sbjct: 600 ASFGFRTNNTATATQSMM----ASTDEPDVSWVNSLVKDVPAVSSGLFGSQQRPYGIGVH 655

Query: 641 ----PWMEQMYIEQEQMVA 655
               PW+EQMYIEQEQMVA
Sbjct: 656 EKLPPWVEQMYIEQEQMVA 674

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448453|ref|XP_002269430.1| PREDICTED: zinc finger CCCH domain-containing protein 29-like [Vitis vinifera]

 Score =  918 bits (2373), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/679 (69%), Positives = 548/679 (80%), Gaps = 29/679 (4%)

Query: 1   MEGGLPKLKDGALYNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMG 60
           MEG  P   DG + +K S+LLELSASDD+ +F+ E+EEKG +VD+P FWYGRR+GSKKMG
Sbjct: 16  MEGKSPNQADG-ISSKCSVLLELSASDDLKSFRCEVEEKGMEVDKPGFWYGRRLGSKKMG 74

Query: 61  FEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLL 120
           FEERTP+ IAAMFGS  VLKY+IETGKV+VNRACGSD  TALHCA AGG+ SS EVVKLL
Sbjct: 75  FEERTPLSIAAMFGSTEVLKYIIETGKVDVNRACGSDQVTALHCAAAGGSVSSLEVVKLL 134

Query: 121 LSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQL 180
           L ASAD NCVD  GNKPVD+I  A+KS  +SR+RA E+LL+GD  I  EEE      PQL
Sbjct: 135 LDASADANCVDCNGNKPVDMIAPALKSSCNSRRRATEMLLRGDQVIELEEEQQPSTAPQL 194

Query: 181 SKDGTEKKEYPIDVSLPDINNGVYGTDDFRMYAFKIKPCSRAYSHDWTECPFVHPGENAR 240
           SK+G+EKKEYPID+SLPDINNG+YGTD+FRMY FK+KPCSRAYSHDWTECPFVHPGENAR
Sbjct: 195 SKEGSEKKEYPIDISLPDINNGIYGTDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENAR 254

Query: 241 RRDPRKYPYTCVPCPEFRKGACPKGDGCEYAHGVFESWLHPAQYRTRLCKDEIGCARKVC 300
           RRDP+K+PY+CVPCPE+RKG+C KGD CEYAHGVFE WLHPAQYRTRLCKDE GC+RKVC
Sbjct: 255 RRDPKKFPYSCVPCPEYRKGSCQKGDSCEYAHGVFECWLHPAQYRTRLCKDETGCSRKVC 314

Query: 301 FFAHKPEELRPVYASTGSAMPSPSPVSASAVDMTTLSPLSLGSASMPLPATSTPPM---- 356
           FFAH+PEELRP+YASTGSAMPSP  +SASAVDM TLSPL+LGS+++ LP TS+  +    
Sbjct: 315 FFAHRPEELRPLYASTGSAMPSPRSLSASAVDMATLSPLTLGSSALLLPPTSSSLLLPPT 374

Query: 357 -----SPLAAASSPKSGNLWQNKVNLTPPALQLPGSRLKTAFSARDLDLLLGLENRTSNL 411
                SP A +SSPKS  +WQNKVN TPP+LQLPGSRLK+A SARDL+L L L    S L
Sbjct: 375 STPPMSPSAVSSSPKSSGMWQNKVNFTPPSLQLPGSRLKSALSARDLELELELLELESQL 434

Query: 412 QQQQLLDEISSLSSPSSWSKEYSRIGDVN-RNLDKVFESLDPSMLSQLQGMSQKQSTPT- 469
             +QL+DE+SSLSSPS W+KE+SRIG++   NLD +F S DPS+LSQLQG+S K +TP  
Sbjct: 435 THKQLMDEMSSLSSPSCWNKEFSRIGELKPTNLDDMFGSFDPSVLSQLQGLSLKATTPQL 494

Query: 470 ---QLQSPTGLQMRQNMNQLRASYPA-ANLSSSPVRKPSSFGYDSSAAVAAAVMNSRSSA 525
              QLQSPTGLQMRQNMNQ RASYP    ++SSPVRK SS+G+DSSAAVAAAVMNSRSSA
Sbjct: 495 QSPQLQSPTGLQMRQNMNQQRASYPTKTTVTSSPVRKTSSYGFDSSAAVAAAVMNSRSSA 554

Query: 526 FAKRSQSFIDRGAVTSRA-GLSMVSNPPTIRSSNLSDWSSPDGKLDWGVQGDELNKLKKS 584
           FAKRSQSFIDRG ++ R+ G +  SN  T+ SSNLSDWSSPDGKLDWG+QGDELNKLKKS
Sbjct: 555 FAKRSQSFIDRGGMSHRSPGFTAASNSATLMSSNLSDWSSPDGKLDWGIQGDELNKLKKS 614

Query: 585 ASFGFRSNNITTPTTKGFTPSSSNVDEPDVSWVNSLVKDVTPEGQGLFGAEKQQYN---- 640
           ASFGFR+NN  T T        ++ DEPDVSWVNSLVKDV     GLFG++++ Y     
Sbjct: 615 ASFGFRTNNTATATQSMM----ASTDEPDVSWVNSLVKDVPAVSSGLFGSQQRPYGIGVH 670

Query: 641 ----PWMEQMYIEQEQMVA 655
               PW+EQMYIEQEQMVA
Sbjct: 671 EKLPPWVEQMYIEQEQMVA 689

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552713|ref|XP_003544707.1| PREDICTED: zinc finger CCCH domain-containing protein 29-like isoform 1 [Glycine max] gi|356552715|ref|XP_003544708.1| PREDICTED: zinc finger CCCH domain-containing protein 29-like isoform 2 [Glycine max]

 Score =  897 bits (2319), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/666 (68%), Positives = 525/666 (78%), Gaps = 33/666 (4%)

Query: 10  DGALYNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMI 69
           DG LYN  S+LLELSASDD  AFKRE+EEKG DV+E  FWYGRRIGSKKMG E RTP+MI
Sbjct: 28  DG-LYN--SVLLELSASDDYEAFKREVEEKGLDVNEAGFWYGRRIGSKKMGSETRTPLMI 84

Query: 70  AAMFGSVAVLKYVI--ETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADV 127
           A++FGS  VL Y++  + G V+VNR CGSD  TALHCAVAGG+ SS E+VKLLL A AD 
Sbjct: 85  ASLFGSAKVLNYILLQKGGGVDVNRVCGSDRATALHCAVAGGSESSLEIVKLLLDAGADA 144

Query: 128 NCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKG----DHTIFEEEELVNIPVPQLSKD 183
            C+D  GNKPV+LI  A  S   SR++A+E+ L+G    D  + +E EL    VP+  + 
Sbjct: 145 ECLDASGNKPVNLIAPAFDSLSKSRRKALEMFLRGGGERDELMSQEMELQMFSVPEKKEG 204

Query: 184 GTEKKEYPIDVSLPDINNGVYGTDDFRMYAFKIKPCSRAYSHDWTECPFVHPGENARRRD 243
              KKEYP+D+SLPDINNGVYGTD+FRMY FK+KPCSRAYSHDWTECPFVHPGENARRRD
Sbjct: 205 SDNKKEYPVDISLPDINNGVYGTDEFRMYNFKVKPCSRAYSHDWTECPFVHPGENARRRD 264

Query: 244 PRKYPYTCVPCPEFRKGACPKGDGCEYAHGVFESWLHPAQYRTRLCKDEIGCARKVCFFA 303
           PRKYPY+CVPCPEFRKG C KGD CEYAHGVFESWLHPAQYRTRLCKDE GCARKVCFFA
Sbjct: 265 PRKYPYSCVPCPEFRKGTCQKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCARKVCFFA 324

Query: 304 HKPEELRPVYASTGSAMPSPSPVSASAVDMTTLSPLSLGSASMPLPATSTPPMSPLAAAS 363
           HKPEELRPVYASTGSAMPSP   SAS +DMT +SPL+L S S+P+P  STPPMSPLAAAS
Sbjct: 325 HKPEELRPVYASTGSAMPSPKSYSASGLDMTAMSPLALSSTSLPMPTVSTPPMSPLAAAS 384

Query: 364 SPKSGNLWQNKVNLTPPALQLPGSRLKTAFSARDLDL---LLGLEN--RTSNLQQQQLLD 418
           SPKSG++WQNK+NLTPP+LQLPGSRLK A SARDL++   LLGLE+  R    QQQQL++
Sbjct: 385 SPKSGSMWQNKINLTPPSLQLPGSRLKAALSARDLEMEMELLGLESPARQQQQQQQQLIE 444

Query: 419 EISSLSSPSSWSKEYSRIGDVN-RNLDKVFESLDPSMLSQLQGMSQKQSTPTQLQSPTGL 477
           EI+ +SSPS  SKE++RI D+N  NLD +  S DPS+ SQL G+S + STPTQ    +GL
Sbjct: 445 EIARISSPSFRSKEFNRIVDLNPTNLDDLLASADPSVFSQLHGLSVQPSTPTQ----SGL 500

Query: 478 QMRQNMNQLRASYPAANLSSSPVRKPSSFGYDSSAAVAAAVMNSRSSAFAKRSQSFIDRG 537
           QMRQNMN LRASYP +N+ SSPVRKPS+FG+DSSAAVA AVMNSRS+AFAKRSQSFIDRG
Sbjct: 501 QMRQNMNHLRASYP-SNIPSSPVRKPSAFGFDSSAAVATAVMNSRSAAFAKRSQSFIDRG 559

Query: 538 AVTSRAGLSMVSNPPTIRSSNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNIT-T 596
           A T   GLS  SN     SS LSDWSSP GKLDWGV GD+LNKL+KS SFGFR++ +T +
Sbjct: 560 AATHHLGLSSASNSSCRVSSTLSDWSSPTGKLDWGVNGDKLNKLRKSTSFGFRNSGVTAS 619

Query: 597 PTTKGFTPSSSNVDEPDVSWVNSLVKDVTPEGQGLFGAEKQQYN-------PWMEQMYIE 649
           P  +    +     EPDVSWV+SLVKDV  E   +FGAEKQQY+       PWMEQ+YIE
Sbjct: 620 PIAQPEFGA-----EPDVSWVHSLVKDVPSERSEIFGAEKQQYDLSKEMLPPWMEQLYIE 674

Query: 650 QEQMVA 655
           QEQMVA
Sbjct: 675 QEQMVA 680

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|171452362|dbj|BAG15872.1| transcription factor [Bruguiera gymnorhiza]

 Score =  879 bits (2271), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/673 (70%), Positives = 541/673 (80%), Gaps = 30/673 (4%)

Query: 1   MEGGLPKLKDGALYNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMG 60
           ME    + KD  L+N  S+LLEL+ASDD+  FK E+E K  DV+E S+WYGRRIGSKKMG
Sbjct: 1   MEDESQRQKDNILHN-CSVLLELAASDDLVGFKNEVEGKFLDVNEVSYWYGRRIGSKKMG 59

Query: 61  FEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLL 120
           F++RTP+MIAA FGS  VL+YVI TGK+++NRACGSD  TALHCAVAGGANSS E VKLL
Sbjct: 60  FDQRTPLMIAATFGSTNVLEYVIRTGKIDINRACGSDKVTALHCAVAGGANSSAETVKLL 119

Query: 121 LSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQL 180
           L ASAD N VD  GNKP DL  +++K   +SRK+ IELLL+G+    +EEE +    PQL
Sbjct: 120 LDASADANLVDANGNKPGDLT-LSLKFSYNSRKKLIELLLRGESLSKDEEEKL-ATTPQL 177

Query: 181 SKDGTEKKEYPIDVSLPDINNGVYGTDDFRMYAFKIKPCSRAYSHDWTECPFVHPGENAR 240
            K+GTEKKEYPID++LPDINNG+YGTD+FRMY+FKIKPCSRAYSHDWTECPFVHPGENAR
Sbjct: 178 MKEGTEKKEYPIDITLPDINNGIYGTDEFRMYSFKIKPCSRAYSHDWTECPFVHPGENAR 237

Query: 241 RRDPRKYPYTCVPCPEFRKGACPKGDGCEYAHGVFESWLHPAQYRTRLCKDEIGCARKVC 300
           RRDPRKYPY+CVPCPEFRKGAC KGD C+YAHGVFESWLHPAQYRTRLCKDE GC RKVC
Sbjct: 238 RRDPRKYPYSCVPCPEFRKGACQKGDACDYAHGVFESWLHPAQYRTRLCKDETGCTRKVC 297

Query: 301 FFAHKPEELRPVYASTGSAMPSPSPVSASAVDMTTLSPLSLGSASMPLPATSTPPMSPLA 360
           FFAHK EELRPVYASTGSAMPSP   S SA+DM + SPL++GS S+PLP  STPPMSPL+
Sbjct: 298 FFAHKSEELRPVYASTGSAMPSPRSSSVSAMDMVSSSPLAVGS-SLPLPTVSTPPMSPLS 356

Query: 361 -AASSPKSGNLWQNKVNLTPPALQLPGSRLKTAFSARDLDL---LLGLENRTSNL--QQQ 414
             +SSPKSG LWQNK N + PALQLPGSRLKTA  ARDLDL   LLGLEN+TS+L  QQQ
Sbjct: 357 TGSSSPKSGGLWQNKTNFSLPALQLPGSRLKTALCARDLDLEMELLGLENQTSHLQQQQQ 416

Query: 415 QLLDEISSLSSPSSWSKEYSRIGDV-NRNLDKVFESLDPSMLSQLQGMSQKQSTPTQLQS 473
           QL DEIS LSS + WS +++RIGD+ + N D VF SLDPS++S L GMS   +T  QLQS
Sbjct: 417 QLRDEISGLSSATCWSNDFNRIGDLKSTNFDDVFGSLDPSLMSPLHGMSLNSATAAQLQS 476

Query: 474 PTGLQMRQNMNQLRASYPAANLSSSPVRKPSSFGYDSSAAVAAAVMNSRSSAFAKRSQSF 533
             GLQ+RQNMNQLR+SY  ++LSSSPVRKP+S+G DSSAAVAAAVMNSRSSAFAKRSQSF
Sbjct: 477 SNGLQIRQNMNQLRSSY-PSSLSSSPVRKPASYGVDSSAAVAAAVMNSRSSAFAKRSQSF 535

Query: 534 IDRGAVTSRAGLSMVSNPPTIRSSNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNN 593
           IDRGA TSR GL+  +N  ++ SSNLSDWSSP GKLDWG+QGDELNKLK+S+SFG RSN 
Sbjct: 536 IDRGAATSRLGLTAAANSVSLMSSNLSDWSSPHGKLDWGIQGDELNKLKRSSSFGIRSN- 594

Query: 594 ITTPTTK-GFTPSSSNVDEPDVSWVNSLVKDVTPEGQGLFGAEKQQYN----------PW 642
            + P TK  F  S+SN  EPDVSWVNSLVKDV P   G FGAEK QYN           W
Sbjct: 595 -SNPVTKTDFMQSNSN--EPDVSWVNSLVKDV-PSVPG-FGAEK-QYNLSKGVRESIPTW 648

Query: 643 MEQMYIEQEQMVA 655
            EQ+Y+EQEQMVA
Sbjct: 649 TEQLYLEQEQMVA 661

Source: Bruguiera gymnorhiza

Species: Bruguiera gymnorhiza

Genus: Bruguiera

Family: Rhizophoraceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449507792|ref|XP_004163130.1| PREDICTED: zinc finger CCCH domain-containing protein 29-like [Cucumis sativus]

 Score =  872 bits (2253), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/678 (69%), Positives = 542/678 (79%), Gaps = 33/678 (4%)

Query: 1   MEGGLPKLKDGALYNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMG 60
           ME    KL DG L++++SILLELSASDD+  FKRE+EEK  DVDEPS WYGR IGSKKMG
Sbjct: 16  MEARFLKLSDGGLFSENSILLELSASDDVEGFKREVEEKDLDVDEPSCWYGRGIGSKKMG 75

Query: 61  FEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLL 120
           FEERTP+MIAAMFGS  V+KY+IETGKV+VNRACGSD  TALHCA AGG+ SS E +KLL
Sbjct: 76  FEERTPLMIAAMFGSSKVVKYLIETGKVDVNRACGSDLTTALHCATAGGSCSSLETIKLL 135

Query: 121 LSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDH-------TIFEEEELV 173
           L  SADV+CVD YG KPVDLI  A +  L+S ++A+E+LL+GD        +++ EE+  
Sbjct: 136 LDGSADVDCVDAYGRKPVDLIVSACRMVLNSGRKAMEMLLRGDGMAGEADLSLYLEEDQQ 195

Query: 174 NIPVPQLSKDGTEKKEYPIDVSLPDINNGVYGTDDFRMYAFKIKPCSRAYSHDWTECPFV 233
            I   Q SK+G++KKEYP+DVSLPDIN+G+YGTDDFRMY FK+KPCSRAYSHDWTECPFV
Sbjct: 196 KITASQFSKEGSDKKEYPVDVSLPDINSGIYGTDDFRMYTFKVKPCSRAYSHDWTECPFV 255

Query: 234 HPGENARRRDPRKYPYTCVPCPEFRKGACPKGDGCEYAHGVFESWLHPAQYRTRLCKDEI 293
           HPGENARRRDPRKYPY+CVPCPEFRKGACPK D CEYAHGVFESWLHPAQYRTRLCKDE 
Sbjct: 256 HPGENARRRDPRKYPYSCVPCPEFRKGACPKADSCEYAHGVFESWLHPAQYRTRLCKDET 315

Query: 294 GCARKVCFFAHKPEELRPVYASTGSAMPSPSPVSASAVDMTTLSPLSLGSASMPLPATST 353
           GC RKVCFFAHKP+ELRPVYASTGS MPSP  +S++  DM+T+SPL+LGS+S+ LP TST
Sbjct: 316 GCTRKVCFFAHKPDELRPVYASTGSGMPSPRSLSSNTGDMSTMSPLALGSSSLSLPTTST 375

Query: 354 PPMSPLAAASSPKSGNLWQNKVNLTPPALQLPGSRLKTAFSARDLDL---LLGLENRTSN 410
           PPMSPLA+ SSPK+GNLWQNK+NLTPPALQLPGSRLK   SARDLDL   LLGLE   S 
Sbjct: 376 PPMSPLASVSSPKNGNLWQNKINLTPPALQLPGSRLKATLSARDLDLEMELLGLEKNVSQ 435

Query: 411 LQ-QQQLLDEISSLSSPSSWSKEYSRIGDVN-RNLDKVFESLDPSMLSQLQGMSQKQSTP 468
           LQ QQQL+DEIS LSSP  W+ + SR  ++   NLD +F SLD S+LSQLQG S K    
Sbjct: 436 LQHQQQLIDEISRLSSP-YWNADVSRTAELKPSNLDDMFGSLDSSLLSQLQGASLKTPIS 494

Query: 469 TQLQSPTGLQMRQNMNQLRASYPAANLSSSPVRKPSSFGYDSSAAVAAAVMNSRSSAFAK 528
            Q+QSPTGLQMRQNM+QLRASYPA NLSSSPV+KPSSFG+DSS+AVAAAVMNSRS+AFAK
Sbjct: 495 AQVQSPTGLQMRQNMSQLRASYPANNLSSSPVKKPSSFGFDSSSAVAAAVMNSRSAAFAK 554

Query: 529 RSQSFIDRGAVTSRAGLSMVSNPPTIRSSNLSDWSSPDGKLDWGVQGDELNKLKKSASFG 588
           RSQSFIDR AV+   G +  +N     SS+LSDW+SPDGKLDWG+ G +LNKLKKSASFG
Sbjct: 555 RSQSFIDRAAVSRLPGFTGAANSAATMSSHLSDWNSPDGKLDWGMNGTDLNKLKKSASFG 614

Query: 589 FRSNNITTPTTKGFTPSSSNVDEPDVSWVNSLVKDVTPEGQGLFGAEKQQYN-------- 640
            R+    TPT   F P    V+EPDVSWVNSLVKDV  E  GLFGAEK+ YN        
Sbjct: 615 IRNG---TPT---FAPP---VEEPDVSWVNSLVKDVPSESFGLFGAEKRPYNLKREINEM 665

Query: 641 --PWME-QMYIEQEQMVA 655
              WME Q+Y EQEQ+VA
Sbjct: 666 LPSWMEQQLYAEQEQIVA 683

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460904|ref|XP_004148184.1| PREDICTED: zinc finger CCCH domain-containing protein 29-like [Cucumis sativus]

 Score =  870 bits (2249), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 472/678 (69%), Positives = 542/678 (79%), Gaps = 33/678 (4%)

Query: 1   MEGGLPKLKDGALYNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMG 60
           ME    KL DG L++++SILLELSASDD+  FKRE+EEK  DVDEPS WYGR IGSKKMG
Sbjct: 16  MEARFLKLSDGGLFSENSILLELSASDDVEGFKREVEEKDLDVDEPSCWYGRGIGSKKMG 75

Query: 61  FEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLL 120
           FEERTP+MIAAMFGS  V+KY+IETGKV+VNRACGSD  TALHCA AGG+ SS E +KLL
Sbjct: 76  FEERTPLMIAAMFGSSKVVKYLIETGKVDVNRACGSDLTTALHCATAGGSCSSLETIKLL 135

Query: 121 LSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDH-------TIFEEEELV 173
           L  SADV+CVD YG KPVDLI  A +  L+S ++A+E+LL+GD        +++ EE+  
Sbjct: 136 LDGSADVDCVDAYGRKPVDLIVSACRMVLNSGRKAMEMLLRGDGMAGEADLSLYLEEDQQ 195

Query: 174 NIPVPQLSKDGTEKKEYPIDVSLPDINNGVYGTDDFRMYAFKIKPCSRAYSHDWTECPFV 233
            I   Q SK+G++KKEYP+DVSLPDIN+G+YGTDDFRMY FK+KPCSRAYSHDWTECPFV
Sbjct: 196 KITASQFSKEGSDKKEYPVDVSLPDINSGIYGTDDFRMYTFKVKPCSRAYSHDWTECPFV 255

Query: 234 HPGENARRRDPRKYPYTCVPCPEFRKGACPKGDGCEYAHGVFESWLHPAQYRTRLCKDEI 293
           HPGENARRRDPRKYPY+CVPCPEFRKGACPK D CEYAHGVFESWLHPAQYRTRLCKDE 
Sbjct: 256 HPGENARRRDPRKYPYSCVPCPEFRKGACPKADSCEYAHGVFESWLHPAQYRTRLCKDET 315

Query: 294 GCARKVCFFAHKPEELRPVYASTGSAMPSPSPVSASAVDMTTLSPLSLGSASMPLPATST 353
           GC RKVCFFAHKP+ELRPVYASTGS MPSP  +S++  DM+T+SPL+LGS+S+ LP TST
Sbjct: 316 GCTRKVCFFAHKPDELRPVYASTGSGMPSPRSLSSNTGDMSTMSPLALGSSSLSLPTTST 375

Query: 354 PPMSPLAAASSPKSGNLWQNKVNLTPPALQLPGSRLKTAFSARDLDL---LLGLENRTSN 410
           PPMSPLA+ SSPK+GNLWQNK+NLTPPALQLPGSRLK   SARDLDL   LLGLE   S 
Sbjct: 376 PPMSPLASVSSPKNGNLWQNKINLTPPALQLPGSRLKATLSARDLDLEMELLGLEKNVSQ 435

Query: 411 LQ-QQQLLDEISSLSSPSSWSKEYSRIGDVN-RNLDKVFESLDPSMLSQLQGMSQKQSTP 468
           LQ QQQL+DEIS LSSP  W+ + SR  ++   NLD +F SLD S+LSQLQG S K    
Sbjct: 436 LQHQQQLIDEISRLSSP-YWNADVSRTAELKPSNLDDMFGSLDSSLLSQLQGASLKTPIS 494

Query: 469 TQLQSPTGLQMRQNMNQLRASYPAANLSSSPVRKPSSFGYDSSAAVAAAVMNSRSSAFAK 528
            Q+QSPTGLQMRQ+M+QLRASYPA NLSSSPV+KPSSFG+DSS+AVAAAVMNSRS+AFAK
Sbjct: 495 AQVQSPTGLQMRQSMSQLRASYPANNLSSSPVKKPSSFGFDSSSAVAAAVMNSRSAAFAK 554

Query: 529 RSQSFIDRGAVTSRAGLSMVSNPPTIRSSNLSDWSSPDGKLDWGVQGDELNKLKKSASFG 588
           RSQSFIDR AV+   G +  +N     SS+LSDW+SPDGKLDWG+ G +LNKLKKSASFG
Sbjct: 555 RSQSFIDRAAVSRLPGFTGAANSAATMSSHLSDWNSPDGKLDWGMNGTDLNKLKKSASFG 614

Query: 589 FRSNNITTPTTKGFTPSSSNVDEPDVSWVNSLVKDVTPEGQGLFGAEKQQYN-------- 640
            R+    TPT   F P    V+EPDVSWVNSLVKDV  E  GLFGAEK+ YN        
Sbjct: 615 IRNG---TPT---FAPP---VEEPDVSWVNSLVKDVPSESFGLFGAEKRPYNLKREINEM 665

Query: 641 --PWME-QMYIEQEQMVA 655
              WME Q+Y EQEQ+VA
Sbjct: 666 LPSWMEQQLYAEQEQIVA 683

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398711|gb|ADL36650.1| C3HL domain class transcription factor [Malus x domestica]

 Score =  840 bits (2171), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/670 (67%), Positives = 521/670 (77%), Gaps = 46/670 (6%)

Query: 8   LKDGALYNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPI 67
           + +     + S+L+ELSASD++ AF+ E+EEKGF +DE  FWYGRRIGSKKMGFEERTP+
Sbjct: 15  IMESEFQKQKSVLVELSASDNLEAFRTEVEEKGFHIDEADFWYGRRIGSKKMGFEERTPL 74

Query: 68  MIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADV 127
           MIAAMFGS  VLKY+I++G  +VNR CGSD  TALHCA AGG+ +S EVVKLLL ASAD 
Sbjct: 75  MIAAMFGSTRVLKYIIQSGMADVNRCCGSDRVTALHCAAAGGSTASLEVVKLLLDASADA 134

Query: 128 NCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFE----EEELVNIPVPQLSKD 183
           NCV+  GNK VDLI  A+KSP  SR++A+E+LL+GD +I E    E +   +  PQ+SK+
Sbjct: 135 NCVNANGNKAVDLIAPALKSPCSSRRKAMEMLLRGDKSIMESDTEEGDQQKVSSPQMSKE 194

Query: 184 GTEKKEYPIDVSLPDINNGVYGTDDFRMYAFKIKPCSRAYSHDWTECPFVHPGENARRRD 243
           G+EKKEYPID+SLPDINNG+YGTD+FRM+ FK+KPCSRAYSHDWTECPFVHPGENARRRD
Sbjct: 195 GSEKKEYPIDISLPDINNGIYGTDEFRMFTFKVKPCSRAYSHDWTECPFVHPGENARRRD 254

Query: 244 PRKYPYTCVPCPEFRKGACPKGDGCEYAHGVFESWLHPAQYRTRLCKDEIGCARKVCFFA 303
           P+KYPY+CVPCPEFRKG+C KGD CEYAHGVFESWLHPAQYRTRLCKDE GC RKVCFFA
Sbjct: 255 PKKYPYSCVPCPEFRKGSCQKGDVCEYAHGVFESWLHPAQYRTRLCKDETGCTRKVCFFA 314

Query: 304 HKPEELRPVYASTGSAMPSPSPVSASAVDMTTLSPLSLGSASMPLPATSTPPMSPLAAAS 363
           H+PEELRPVYASTGSAMPSP  +S SA DM  LSPL+LGS++M +PATSTPPMSPL+AAS
Sbjct: 315 HRPEELRPVYASTGSAMPSPRSMSVSAADMAALSPLALGSSAMSMPATSTPPMSPLSAAS 374

Query: 364 SPKSGNLWQNKVNLTPPALQLPGSRLKTAFSARDLDLLLGLENRTSN-------LQQQQL 416
           SPKSG LWQNKVNLTPPALQLPGSRLK+A SARDL+L + L    S+        QQQ L
Sbjct: 375 SPKSGGLWQNKVNLTPPALQLPGSRLKSACSARDLELEMELLGLDSHSSQQQQQQQQQHL 434

Query: 417 LDEISSLSSPSSWSKEYSRIGDVN-RNLDKVFESLDPSMLSQLQGMSQKQSTPTQLQSPT 475
            DEIS LSS    S  YSR G++   NLD  F S+DPS+LSQLQG+S K STP       
Sbjct: 435 WDEISRLSS----SPSYSRHGELKPTNLDDAFGSVDPSLLSQLQGLSLKPSTPNH----- 485

Query: 476 GLQMRQNMNQLRASYPAANLSSSPVRKPSSFGYDSSAAVAAAVMNSRSSAFA-KRSQSFI 534
               RQNMNQLR+SYP  NLSSSPVRKPSSFG DS +A+AAAVMNSRS+AFA +RSQSFI
Sbjct: 486 ----RQNMNQLRSSYP-TNLSSSPVRKPSSFGLDSPSALAAAVMNSRSAAFAQQRSQSFI 540

Query: 535 DRGAVTSRAGLSMVSNPPTIRSSNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNI 594
           DRGA+      +   N  T+R S  SDW SP GKLDWG+QGDELNKLKKSASFGFRSNN 
Sbjct: 541 DRGAMNHLPLHNAPVNSSTMRQS--SDWGSPGGKLDWGMQGDELNKLKKSASFGFRSNNA 598

Query: 595 TTPTTKGFTPSSSNVDEPDVSWVNSLVKDVTPEGQGLFGAEKQQ-YN-----------PW 642
             P  K  TP+   V+EPDVSWVN+LV+DV+ E   LFGA+K+Q Y+            W
Sbjct: 599 GPPGFK--TPA---VEEPDVSWVNTLVRDVSSERSELFGADKKQRYHHLNNGGHEMLPSW 653

Query: 643 MEQMYIEQEQ 652
            EQMYIEQEQ
Sbjct: 654 AEQMYIEQEQ 663

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357492731|ref|XP_003616654.1| Zinc finger CCCH domain-containing protein [Medicago truncatula] gi|355517989|gb|AES99612.1| Zinc finger CCCH domain-containing protein [Medicago truncatula]

 Score =  835 bits (2156), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/667 (66%), Positives = 522/667 (78%), Gaps = 34/667 (5%)

Query: 15  NKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFG 74
           + SSILLELSASDD  AFKRE++EK  DV+E  FWYGRRIGSKKM  E+RTP+MIA+MFG
Sbjct: 10  HNSSILLELSASDDFDAFKREVDEKDLDVNEEGFWYGRRIGSKKMESEKRTPLMIASMFG 69

Query: 75  SVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYG 134
           S  V++Y++  GKV+VN  CGSD  TALHCAVAGG+    EVVKLLL A AD +C+D  G
Sbjct: 70  STRVVEYIVSAGKVDVNGVCGSDMATALHCAVAGGSEFLLEVVKLLLDAGADADCLDASG 129

Query: 135 NKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLSKDGTEKKEYPIDV 194
           NKPVDLI  A  S   SR++ +E+ L+G+ +    +  ++ P   L K+G +KKE+PID+
Sbjct: 130 NKPVDLIAPAFNSSSKSRRKVLEMFLRGEVSAELIQGEMDAPF-SLKKEGGDKKEFPIDI 188

Query: 195 SLPDINNGVYGTDDFRMYAFKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYTCVPC 254
           SLPDINNGVYG+D+FRMY+FK+KPCSRAYSHDWTECPFVHPGENARRRDPRKYPY+CVPC
Sbjct: 189 SLPDINNGVYGSDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPC 248

Query: 255 PEFRKGACPKGDGCEYAHGVFESWLHPAQYRTRLCKDEIGCARKVCFFAHKPEELRPVYA 314
           PEFRKG+C KGD CEYAHGVFESWLHPAQYRTRLCKDE GC RKVCFFAH+PEELRPVYA
Sbjct: 249 PEFRKGSCQKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCNRKVCFFAHRPEELRPVYA 308

Query: 315 STGSAMPSPSPVSASAVDMTTLSPLSLGSASMPLPATSTPPMSPLAAASSPKSGNLWQNK 374
           STGSAMPSP   SAS +DMT++SPLSL S+S+P+   STPPMSPLA +SSPKSGN+WQNK
Sbjct: 309 STGSAMPSPKSYSASGMDMTSMSPLSLSSSSLPMSTVSTPPMSPLAGSSSPKSGNMWQNK 368

Query: 375 VNLTPPALQLPGSRLKTAFSARDLDL---LLGLEN---RTSNLQQQQLLDEISSLSSPSS 428
           +NLTPP+LQLPGSRLK+A SARDLDL   LLGL++   +    QQQQL++EI+ +SSPS 
Sbjct: 369 LNLTPPSLQLPGSRLKSALSARDLDLEMELLGLDSPRRQQQQQQQQQLIEEIARISSPSF 428

Query: 429 WSKEYSRIGDVN-RNLDKVFESLDPSMLSQLQGMSQKQSTPT-QLQSPTGLQMR------ 480
            + E++RI D+N  NLD +  S DP++LSQL G+S + STPT Q+ SP+ +QMR      
Sbjct: 429 RNSEFNRIADLNPTNLDDLLASADPNLLSQLHGLSMQPSTPTQQMHSPSAMQMRQNMNMG 488

Query: 481 QNMNQLRASYPAANLSSSPVRKPSSFGYDSSAAVAAAVMNSRSSAFAK-RSQSFIDRGAV 539
           QNMN LRASYP+ N+ SSPVRKPS +G+DSSAAVAAAVMNSRS+AFAK RSQSFIDRGA 
Sbjct: 489 QNMNHLRASYPSNNMPSSPVRKPSPYGFDSSAAVAAAVMNSRSAAFAKQRSQSFIDRGAA 548

Query: 540 TSRAGLSMVSNPPTIRSSNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNITTPTT 599
           T   GLS  SNP    SS LSDW SP GKLDWGV GDELNKL+KSASFGFR+N    PT 
Sbjct: 549 THHLGLSPPSNPSCRVSSGLSDWGSPTGKLDWGVNGDELNKLRKSASFGFRNNGPAAPT- 607

Query: 600 KGFTPSSSNVDEPDVSWVNSLVKDVTPEGQGLFGAEK----QQYN-------PWMEQMYI 648
                 +S   EPDVSWVNSLVKDV  +  G++GAE     QQY+       PW+EQMY 
Sbjct: 608 ------ASQHAEPDVSWVNSLVKDVPSDNSGVYGAENMRQLQQYDLSRDVLPPWVEQMYK 661

Query: 649 EQEQMVA 655
           EQEQMVA
Sbjct: 662 EQEQMVA 668

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112487|ref|XP_002316207.1| predicted protein [Populus trichocarpa] gi|222865247|gb|EEF02378.1| predicted protein [Populus trichocarpa]

 Score =  824 bits (2129), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/660 (66%), Positives = 495/660 (75%), Gaps = 83/660 (12%)

Query: 9   KDGALYNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIM 68
           + G+L  K S+LLELSASDD++ FK E+E+KG D+DE S+WYGRRIG KKMGFEERTP+M
Sbjct: 23  QKGSLLYKCSVLLELSASDDLAGFKIEVEQKGLDIDEASYWYGRRIGLKKMGFEERTPLM 82

Query: 69  IAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVN 128
           IAA+FGS  VLKY+IETGKVNVNR CGSD  TALHCAVAGGA+SS  VVKLLL ASAD N
Sbjct: 83  IAALFGSAHVLKYIIETGKVNVNRVCGSDRVTALHCAVAGGADSSVGVVKLLLDASADPN 142

Query: 129 CVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLSKDGTEKK 188
            VD  GNKP DL   + K   +SRK+ IELLLKG+ ++ E+EE   I  PQL+++G EKK
Sbjct: 143 SVDGNGNKPGDLFAPSSKWLCNSRKKMIELLLKGE-SLSEDEEEKLIITPQLAREGIEKK 201

Query: 189 EYPIDVSLPDINNGVYGTDDFRMYAFKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYP 248
           EYP+DV+LPDINNG+YGTD+FRMY+FK+KPCSRAYSHDWTECPFVHPGENARRRDP+KYP
Sbjct: 202 EYPLDVTLPDINNGIYGTDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPKKYP 261

Query: 249 YTCVPCPEFRKGACPKGDGCEYAHGVFESWLHPAQYRTRLCKDEIGCARKVCFFAHKPEE 308
           Y+CVPCPEFRKG C KGD CEYAHGVFESWLHPAQYRTRLCKDE GCARKVCFFAHKPEE
Sbjct: 262 YSCVPCPEFRKGTCQKGDYCEYAHGVFESWLHPAQYRTRLCKDETGCARKVCFFAHKPEE 321

Query: 309 LRPVYASTGSAMPSPSPVSASAVDMTTLSPLSLGSASMPLPATSTPPMSPLAA-ASSPKS 367
           LRPVYA+TGSAMPS    S SAVDM TLSPL+LGS+S+ LP TSTPPMSPLAA +SSPKS
Sbjct: 322 LRPVYAATGSAMPSQRSTS-SAVDMATLSPLALGSSSLSLPGTSTPPMSPLAAVSSSPKS 380

Query: 368 GNLWQNKVNLTPPALQLPGSRLKTAFSARDLDL---LLGLENRTSNLQQQQLLDEISSLS 424
           G LWQNKV+LTPPALQLPGSRLKTAF ARDLDL   LLGLEN                  
Sbjct: 381 GGLWQNKVSLTPPALQLPGSRLKTAFCARDLDLEMELLGLENLKPT-------------- 426

Query: 425 SPSSWSKEYSRIGDVNRNLDKVFESLDPSMLSQLQGMSQKQSTPTQLQSPTGLQMRQNMN 484
                             LD VF SLDPS++S +QG+S K ST T               
Sbjct: 427 -----------------TLDDVFGSLDPSLMSPMQGVSLKASTQTH-------------- 455

Query: 485 QLRASYPAANLSSSPVRKPSSFGYDSSAAVAAAVMNSRSSAFAKRSQSFIDRGAVTSRAG 544
                YPAANLSSSP R P+S+G+D+SAAVAAAVMNSRSSAFAKRSQ+            
Sbjct: 456 -----YPAANLSSSPARNPTSYGFDTSAAVAAAVMNSRSSAFAKRSQT------------ 498

Query: 545 LSMVSNPPTIRSSNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNITTPTTKGFTP 604
               +N  ++ SSNLSDW+SP+GKLDWG+QGDELNKLKKSASFGFRSNN   P T   + 
Sbjct: 499 ----ANSASMMSSNLSDWNSPNGKLDWGIQGDELNKLKKSASFGFRSNN--NPATTAASL 552

Query: 605 SSSNVDEPDVSWVNSLVKDVTPEGQGLFGAEKQQYN---------PWMEQMYIEQEQMVA 655
           ++S+VDEPDVSWVNSLVKDV P G   FGAEKQ            PWMEQMY EQEQMVA
Sbjct: 553 TASHVDEPDVSWVNSLVKDVPPAGSTFFGAEKQYSRREGVPESLPPWMEQMYREQEQMVA 612

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224098638|ref|XP_002311228.1| predicted protein [Populus trichocarpa] gi|222851048|gb|EEE88595.1| predicted protein [Populus trichocarpa]

 Score =  814 bits (2103), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/659 (64%), Positives = 481/659 (72%), Gaps = 96/659 (14%)

Query: 9   KDGALYNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIM 68
           KD  L+ + S+LLELSASDD++ FK E+E+KG D+D  ++WY +RIGSKKMGFEERTP+M
Sbjct: 24  KDNFLH-ECSVLLELSASDDLAGFKIEVEQKGLDIDGANYWYAKRIGSKKMGFEERTPLM 82

Query: 69  IAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVN 128
           IAAMFGS  VLKY+IETGKVNVNR CGSD  TALHCAVAG A SS  +VKLLL ASAD N
Sbjct: 83  IAAMFGSTHVLKYIIETGKVNVNRVCGSDKVTALHCAVAGCAASSVGIVKLLLDASADPN 142

Query: 129 CVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLSKDGTEKK 188
             D  GNKP DL   + K   +SRK+ IELLLKG +   +EEE + I +PQL+K+GTEKK
Sbjct: 143 SADANGNKPGDLFSTSSKCMCNSRKKLIELLLKGQNLSEDEEEKL-IIMPQLAKEGTEKK 201

Query: 189 EYPIDVSLPDINNGVYGTDDFRMYAFKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYP 248
           EYP+DV+LPDINNG+YGTD+FRMY+FK+KPCSRAYSHDWTECPFVHPGENARRRDP KYP
Sbjct: 202 EYPLDVTLPDINNGIYGTDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPMKYP 261

Query: 249 YTCVPCPEFRKGACPKGDGCEYAHGVFESWLHPAQYRTRLCKDEIGCARKVCFFAHKPEE 308
           Y+CVPCPEFRKG C KGD CEYAHGVFESWLHPAQYRTRLCKDE GCARKVCFFAHKPE+
Sbjct: 262 YSCVPCPEFRKGTCQKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCARKVCFFAHKPED 321

Query: 309 LRPVYASTGSAMPSPSPVSASAVDMTTLSPLSLGSASMPLPATSTPPMSPLA-AASSPKS 367
           LRPVYASTGSA             MTTLSPL+LGS+S PLPAT TPPMSPLA A+SSPKS
Sbjct: 322 LRPVYASTGSA-------------MTTLSPLALGSSSFPLPATPTPPMSPLAVASSSPKS 368

Query: 368 GNLWQNKVNLTPPALQLPGSRLKTAFSARDLDL---LLGLENRTSNLQQQQLLDEISSLS 424
           G+LWQNKV+ TPPALQLPGSRLKTAF ARDL+L   LLGLE                   
Sbjct: 369 GSLWQNKVSQTPPALQLPGSRLKTAFCARDLNLEMELLGLE------------------- 409

Query: 425 SPSSWSKEYSRIGDVNRNLDKVFESLDPSMLSQLQGMSQKQSTPTQLQSPTGLQMRQNMN 484
                                   SL+ S  SQL             QSP G+Q+RQNMN
Sbjct: 410 -----------------------ISLNASAQSQL-------------QSPNGMQIRQNMN 433

Query: 485 QLRASYPAANLSSSPVRKPSSFGYDSSAAVAAAVMNSRSSAFAKRSQSFIDRGAVTSRAG 544
           QLR+SYPAA+LSSSP R P S+G+D+SAAVAAAVMNSRSSAFAKRSQSFID         
Sbjct: 434 QLRSSYPAASLSSSPARNPISYGFDTSAAVAAAVMNSRSSAFAKRSQSFID--------- 484

Query: 545 LSMVSNPPTIRSSNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNITTPTTKGFTP 604
               +N  ++  SNL DW SP+GKLDWG+QGDELNKLKKSASFGFRSNN     T     
Sbjct: 485 ---PANTISMMPSNLPDWGSPNGKLDWGIQGDELNKLKKSASFGFRSNN-NPAATTAANV 540

Query: 605 SSSNVDEPDVSWVNSLVKDVTPEGQGLFGAEKQ---------QYNPWMEQMYIEQEQMV 654
           ++S+V EPDVSWVNSLVKD  P G   FGAEKQ            PWMEQ+YIEQEQMV
Sbjct: 541 TASHVGEPDVSWVNSLVKDAPPAGSTFFGAEKQYSLGKGVRESLPPWMEQIYIEQEQMV 599

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	655
TAIR|locus:2065058	597	CZF1 [Arabidopsis thaliana (ta	0.580	0.636	0.595	6.9e-153
TAIR|locus:2082068	580	SZF1 "salt-inducible zinc fing	0.578	0.653	0.576	1.6e-145
TAIR|locus:2178843	607	AT5G58620 [Arabidopsis thalian	0.590	0.637	0.566	7.8e-144
TAIR|locus:2182250	706	AT5G12850 [Arabidopsis thalian	0.632	0.586	0.398	5.2e-102
TAIR|locus:2064647	716	OXS2 "OXIDATIVE STRESS 2" [Ara	0.514	0.470	0.437	1.5e-77
TAIR|locus:2118209	356	OZF2 "oxidation-related zinc f	0.198	0.365	0.595	2.9e-46
TAIR|locus:2024112	393	SOM "SOMNUS" [Arabidopsis thal	0.184	0.307	0.595	9.5e-46
TAIR|locus:2052005	359	OZF1 "Oxidation-related Zinc F	0.180	0.328	0.618	2e-45
TAIR|locus:2183339	245	PEI1 [Arabidopsis thaliana (ta	0.198	0.530	0.633	2.7e-45
UNIPROTKB|Q9FU27	386	LOC_Os01g09620 "Zinc finger CC	0.163	0.277	0.682	5.7e-43

TAIR|locus:2065058 CZF1 [Arabidopsis thaliana (taxid:3702)]

 Score = 1220 (434.5 bits), Expect = 6.9e-153, Sum P(3) = 6.9e-153
 Identities = 244/410 (59%), Positives = 293/410 (71%)

Query:     7 KLKDGALYNKSSILLELSASDDISAFKREIEEK-GFDVDEPSFWYGRRIGSKKMGFEERT 65
             K +DGA    ++ LLE +A DD+S+FKREIEE    ++DE  FWY RR+GSKKMGFEERT
Sbjct:    23 KSEDGA---SATCLLEFAACDDLSSFKREIEENPSVEIDESGFWYCRRVGSKKMGFEERT 79

Query:    66 PIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASA 125
             P+M+AAM+GS+ VL Y+I TG+ +VNR C  +  TALHCAV+G + S  E++K+LL ASA
Sbjct:    80 PLMVAAMYGSMEVLNYIIATGRSDVNRVCSDEKVTALHCAVSGCSVSIVEIIKILLDASA 139

Query:   126 DVNCVDVYGNKPVDLIPVAMKS-PLHSRKRAIELLLKGDH-TIFEEEELVNIPVPQLSKD 183
               NCVD  GNKPVDL+    +  P  SRK A+E+LL G H ++ EEEE       +L   
Sbjct:   140 SPNCVDANGNKPVDLLAKDSRFVPNQSRK-AVEVLLTGIHGSVMEEEE------EELKSV 192

Query:   184 GTEKKEYPIDVSLPDINNGVYGTDDFRMYAFKIKPCSRAYSHDWTECPFVHPGENARRRD 243
              T+   YP D SLPDIN GVYGTDDFRM++FK+KPCSRAYSHDWTECPFVHPGENARRRD
Sbjct:   193 VTK---YPADASLPDINEGVYGTDDFRMFSFKVKPCSRAYSHDWTECPFVHPGENARRRD 249

Query:   244 PRKYPYTCVPCPEFRKGACPKGDGCEYAHGVFESWLHPAQYRTRLCKDEIGCARKVCFFA 303
             PRKYPYTCVPCPEFRKG+CPKGD CEYAHGVFESWLHPAQYRTRLCKDE GCAR+VCFFA
Sbjct:   250 PRKYPYTCVPCPEFRKGSCPKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCARRVCFFA 309

Query:   304 HKPEELRPVYASTGXXXXXXXXXXXXXXDMTTLSPLSLGXXXXXXXXXXXXXXXXXXXXX 363
             H+ +ELRPV ASTG              +M+ +SPL+LG                     
Sbjct:   310 HRRDELRPVNASTGSAMVSPRSSNQSP-EMSVMSPLTLGSSPMNSPMANGVPLSP----- 363

Query:   364 XXKSGNLWQNKVN-LTPPALQLPGSRLKTAFSARDLDLLL-----GLENR 407
               ++G LWQN+VN LTPP LQL GSRLK+  SARD+D+ +     GL+NR
Sbjct:   364 --RNGGLWQNRVNSLTPPPLQLNGSRLKSTLSARDMDMEMELRFRGLDNR 411

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009409 "response to cold" evidence=IEP

GO:0050832 "defense response to fungus" evidence=RCA;IMP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

TAIR|locus:2082068 SZF1 "salt-inducible zinc finger 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1169 (416.6 bits), Expect = 1.6e-145, Sum P(2) = 1.6e-145
 Identities = 227/394 (57%), Positives = 276/394 (70%)

Query:    16 KSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGS 75
             ++ +LLE +A DD+ +FKRE+EEKG D+DE   WY RR+GSKKMG EERTP+M+AAM+GS
Sbjct:    26 ETMLLLEFAACDDLDSFKREVEEKGLDLDESGLWYCRRVGSKKMGLEERTPLMVAAMYGS 85

Query:    76 VAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGN 135
             + VL +++ TGK +VNRACG +  T LHCAVAG + +  EV+ +LL ASA VN VD  GN
Sbjct:    86 IKVLTFIVSTGKSDVNRACGEERVTPLHCAVAGCSVNMIEVINVLLDASALVNSVDANGN 145

Query:   136 KPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLSKDGTEKKEYPIDVS 195
             +P+D+     +     R++A+ELLL+G       +E V   +  +SK       YP D S
Sbjct:   146 QPLDVFVRVSRFVASPRRKAVELLLRGGGVGGLIDEAVEEEIKIVSK-------YPADAS 198

Query:   196 LPDINNGVYGTDDFRMYAFKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYTCVPCP 255
             LPDIN GVYG+D+FRMY+FK+KPCSRAYSHDWTEC FVHPGENARRRDPRKYPYTCVPCP
Sbjct:   199 LPDINEGVYGSDEFRMYSFKVKPCSRAYSHDWTECAFVHPGENARRRDPRKYPYTCVPCP 258

Query:   256 EFRKGACPKGDGCEYAHGVFESWLHPAQYRTRLCKDEIGCARKVCFFAHKPEELRPVYAS 315
             EFRKG+CPKGD CEYAHGVFESWLHPAQY+TRLCKDE GCARKVCFFAHK EE+RPV AS
Sbjct:   259 EFRKGSCPKGDSCEYAHGVFESWLHPAQYKTRLCKDETGCARKVCFFAHKREEMRPVNAS 318

Query:   316 TGXXXXXXXXXXXXXXDMTTLSPLSLGXXXXXXXXXXXXXXXXXXXXXXXKSGNLWQNKV 375
             TG               M  LSPL+                         ++G  WQN+V
Sbjct:   319 TGSAVAQSPFSSLEM--MPGLSPLAYSSGVSTPPVSPMANGVPSSP----RNGGSWQNRV 372

Query:   376 N-LTPPALQLPG-SRLKTAFSARDLDLLLGLENR 407
             N LTPPALQL G SRLK+  SARD+D+ + +E R
Sbjct:   373 NTLTPPALQLNGGSRLKSTLSARDIDMEMEMELR 406

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0009646 "response to absence of light" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

TAIR|locus:2178843 AT5G58620 [Arabidopsis thaliana (taxid:3702)]

 Score = 1186 (422.6 bits), Expect = 7.8e-144, Sum P(2) = 7.8e-144
 Identities = 230/406 (56%), Positives = 281/406 (69%)

Query:    16 KSSILLELSASDDISAFKREIEEKGFD-VDEPSFWYGRRIGSKKMGFEERTPIMIAAMFG 74
             K S+LLE SA +D+S FK  +EE+G + +D    WYGRR+GSKKMGFEERTP+MIAA+FG
Sbjct:    10 KFSLLLESSACNDLSGFKSLVEEEGLESIDGSGLWYGRRLGSKKMGFEERTPLMIAALFG 69

Query:    75 SVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYG 134
             S  V+ Y+I TG V+VNR+CGSDG TALHCAV+G + +S E+V LLL  SA+ +  D YG
Sbjct:    70 SKEVVDYIISTGLVDVNRSCGSDGATALHCAVSGLSANSLEIVTLLLKGSANPDSCDAYG 129

Query:   135 NKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFE---EEEL---VNIPVPQLSKDGTEKK 188
             NKP D+I   +     +R + +E LLKG+  + E   +EE    V + V      G+E+K
Sbjct:   130 NKPGDVIFPCLSPVFSARMKVLERLLKGNDDLNEVNGQEESEPEVEVEVEVSPPRGSERK 189

Query:   189 EYPIDVSLPDINNGVYGTDDFRMYAFKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYP 248
             EYP+D +LPDI NGVYGTD+FRMYAFKIKPCSRAYSHDWTECPFVHPGENARRRDPRKY 
Sbjct:   190 EYPVDPTLPDIKNGVYGTDEFRMYAFKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYH 249

Query:   249 YTCVPCPEFRKGACPKGDGCEYAHGVFESWLHPAQYRTRLCKDEIGCARKVCFFAHKPEE 308
             Y+CVPCPEFRKG+C +GD CEYAHG+FE WLHPAQYRTRLCKDE  C+R+VCFFAHKPEE
Sbjct:   250 YSCVPCPEFRKGSCSRGDTCEYAHGIFECWLHPAQYRTRLCKDETNCSRRVCFFAHKPEE 309

Query:   309 LRPVYASTGXX-----XXXXXXXXXXXXDMTTLSPLSLGXXXXXXXXXXXXXXXXXXXXX 363
             LRP+Y STG                   DM  +SPL +G                     
Sbjct:   310 LRPLYPSTGSGVPSPRSSFSSCNSSTAFDMGPISPLPIGATTTPPLSPNGVSSPIG---- 365

Query:   364 XXKSGNLWQNKVNLTPPALQLPGSRLKTAFSARDLDLLLGLENRTS 409
                 G  W N  N+TPPALQLPGSRLK+A +AR++D    +++ TS
Sbjct:   366 ---GGKTWMNWPNITPPALQLPGSRLKSALNAREIDFSEEMQSLTS 408

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

TAIR|locus:2182250 AT5G12850 [Arabidopsis thaliana (taxid:3702)]

 Score = 725 (260.3 bits), Expect = 5.2e-102, Sum P(2) = 5.2e-102
 Identities = 184/462 (39%), Positives = 234/462 (50%)

Query:   185 TEKKEYPIDVSLPDINNGVYGTDDFRMYAFKIKPCSRAYSHDWTECPFVHPGENARRRDP 244
             +EKKEYPID SLPDI +G+Y TD+FRM++FKI+PCSRAYSHDWTECPF HPGENARRRDP
Sbjct:   234 SEKKEYPIDPSLPDIKSGIYSTDEFRMFSFKIRPCSRAYSHDWTECPFAHPGENARRRDP 293

Query:   245 RKYPYTCVPCPEFRKGACPKGDGCEYAHGVFESWLHPAQYRTRLCKDEIGCARKVCFFAH 304
             RK+ YTCVPCP+F+KG+C +GD CEYAHGVFE WLHPAQYRTRLCKD +GC R+VCFFAH
Sbjct:   294 RKFHYTCVPCPDFKKGSCKQGDMCEYAHGVFECWLHPAQYRTRLCKDGMGCNRRVCFFAH 353

Query:   305 KPEELRPVYASTGXXX---XXXXXXXXXXXDMTTLSPLSLGXXXXXXXXXXXXXXXXXXX 361
               EELRP+Y STG                 DM ++  +  G                   
Sbjct:   354 ANEELRPLYPSTGSGLPSPRASSAVSASTMDMASVLNMLPGSPSAAQHSFTPPISPSGNG 413

Query:   362 XXXXKSGNLWQNKVNLTPPALQLPGS-----RLKTAFSARDLDLLLGLENRTSNLQQQQL 416
                  S   W  + N+  PAL LPGS     RL+++ +ARD+        + S L + ++
Sbjct:   414 SMPHSSMG-WPQQ-NI--PALNLPGSNIQLSRLRSSLNARDIP-----SEQLSMLHEFEM 464

Query:   417 LDEIXXXXXXXXXXXXXXRIGDVN-RNLDKVF--ESLDPSMLSQLQGMSQKQSTPTQLQS 473
               ++              R   +N  NL+++F  E   P    QL  +S   S P+   +
Sbjct:   465 QRQLAGDMHSPRFMNHSARPKTLNPSNLEELFSAEVASPRFSDQL-AVSSVLS-PSHKSA 522

Query:   474 PTGLQMRQNMNQLRASYPAANLSSSPVRKPSSFGYDXXXXXXXXXXXXXXXXFAKRSQSF 533
                L   QN  Q   S    NL SSP                           A+  Q  
Sbjct:   523 L--LNQLQNNKQSMLSPIKTNLMSSPKNVEQHSLLQQASSPRGGEPISPMN--ARMKQQL 578

Query:   534 IDRGAVTSRAGLSMVSN-PPTIRSSNLSDWSSPD----GKLDWGVQGDELNKLKKSASFG 588
               R   +   G S+  +  PT   S LS WSS D     K+DW VQ DEL +L+KS S  
Sbjct:   579 HSRSLSSRDFGSSLPRDLMPTDSGSPLSPWSSWDQTHGSKVDWSVQSDELGRLRKSHSL- 637

Query:   589 FRSNNITTPTTKGFTPSSSNVDEPDVSWVNSLVKDVTPEGQG 630
               +NN          P+     E DVSW   ++KD +    G
Sbjct:   638 --ANN----------PNR----EADVSWAQQMLKDSSSPRNG 663

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0005737 "cytoplasm" evidence=IDA

TAIR|locus:2064647 OXS2 "OXIDATIVE STRESS 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 680 (244.4 bits), Expect = 1.5e-77, Sum P(3) = 1.5e-77
 Identities = 164/375 (43%), Positives = 208/375 (55%)

Query:    56 SKKMGFEERTPIMIAAMFGSV---AVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANS 112
             ++  G ++ T +  AA  G+V    V+K ++  G  ++N    ++G  A    V      
Sbjct:   119 NRACGNDQTTALHCAASGGAVNAIQVVKLLLAAG-ADLN-LLDAEGQRAGDVIVVP---P 173

Query:   113 SFEVVKLLLSA--SADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEE 170
               E VKL+L    SAD +       + V  +P    SP HS          G++      
Sbjct:   174 KLEGVKLMLQELLSADGSSTAERNLRVVTNVPNRSSSPCHSPT--------GENGGSGSG 225

Query:   171 ELVNIPVPQLSKDGTE-KKEYPIDVSLPDINNGVYGTDDFRMYAFKIKPCSRAYSHDWTE 229
               +  P    S   TE KKEYP+D SLPDI N +Y TD+FRMY+FK++PCSRAYSHDWTE
Sbjct:   226 SPLGSPFKLKS---TEFKKEYPVDPSLPDIKNSIYATDEFRMYSFKVRPCSRAYSHDWTE 282

Query:   230 CPFVHPGENARRRDPRKYPYTCVPCPEFRKGACPKGDGCEYAHGVFESWLHPAQYRTRLC 289
             CPFVHPGENARRRDPRK+ Y+CVPCP+FRKGAC +GD CEYAHGVFE WLHPAQYRTRLC
Sbjct:   283 CPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLC 342

Query:   290 KDEIGCARKVCFFAHKPEELRPVYASTGXXXXXXXXXXXXXXDMTTLSPLSLGXXXXXXX 349
             KD  GCAR+VCFFAH PEELRP+YASTG               ++ L     G       
Sbjct:   343 KDGTGCARRVCFFAHTPEELRPLYASTGSAVPSPRSNADYAAALSLLPGSPSGVSVMSPL 402

Query:   350 XXXXXXXXXXXXXXXXKSGNLWQNKVNLTPPALQLPGS-----RLKTAFSARDLDLLLGL 404
                              S   W    N+  PAL LPGS     RL+++ +ARD+      
Sbjct:   403 SPSAAGNGMSH------SNMAWPQP-NV--PALHLPGSNLQSSRLRSSLNARDIPT--DE 451

Query:   405 ENRTSNLQQQQLLDE 419
              N  ++ +QQQLL+E
Sbjct:   452 FNMLADYEQQQLLNE 466

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0006486 "protein glycosylation" evidence=RCA

TAIR|locus:2118209 OZF2 "oxidation-related zinc finger 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 460 (167.0 bits), Expect = 2.9e-46, Sum P(2) = 2.9e-46
 Identities = 78/131 (59%), Positives = 94/131 (71%)

Query:   180 LSKDGTEKKEYPIDVSLPDINNGVYGTDDFRMYAFKIKPCSRAYSHDWTECPFVHPGENA 239
             L  +  + + YP D+  PD     Y  D FRMY FK++ C+R  SHDWTECP+ HPGE A
Sbjct:    52 LPSNEPDPESYP-DLLGPDSPIDAYSCDHFRMYDFKVRRCARGRSHDWTECPYAHPGEKA 110

Query:   240 RRRDPRKYPYTCVPCPEFRKGACPKGDGCEYAHGVFESWLHPAQYRTRLCKDEIGCARKV 299
             RRRDPRKY Y+   CP+FRKG C KGD CE+AHGVFE WLHPA+YRT+ CKD   C RK+
Sbjct:   111 RRRDPRKYHYSGTACPDFRKGGCKKGDSCEFAHGVFECWLHPARYRTQPCKDGGNCLRKI 170

Query:   300 CFFAHKPEELR 310
             CFFAH P++LR
Sbjct:   171 CFFAHSPDQLR 181

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;IDA;TAS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2024112 SOM "SOMNUS" [Arabidopsis thaliana (taxid:3702)]

 Score = 427 (155.4 bits), Expect = 9.5e-46, Sum P(3) = 9.5e-46
 Identities = 75/126 (59%), Positives = 89/126 (70%)

Query:   186 EKKEYPIDVSLPDINNGVYGTDDFRMYAFKIKPCSRAYSHDWTECPFVHPGENARRRDPR 245
             E KEY  D    D     Y +D FRM+ FKI+ C+R+ SHDWT+CPF HPGE ARRRDPR
Sbjct:    64 ENKEYCYDSDSDD----PYASDHFRMFEFKIRRCTRSRSHDWTDCPFAHPGEKARRRDPR 119

Query:   246 KYPYTCVPCPEFRKGA-CPKGDGCEYAHGVFESWLHPAQYRTRLCKDEIGCARKVCFFAH 304
             ++ Y+   CPEFR+G  C +GD CE+AHGVFE WLHP +YRT  CKD   C RKVCFFAH
Sbjct:   120 RFQYSGEVCPEFRRGGDCSRGDDCEFAHGVFECWLHPIRYRTEACKDGKHCKRKVCFFAH 179

Query:   305 KPEELR 310
              P +LR
Sbjct:   180 SPRQLR 185

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0010187 "negative regulation of seed germination" evidence=IMP

TAIR|locus:2052005 OZF1 "Oxidation-related Zinc Finger 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 446 (162.1 bits), Expect = 2.0e-45, Sum P(2) = 2.0e-45
 Identities = 73/118 (61%), Positives = 89/118 (75%)

Query:   193 DVSLPDINNGVYGTDDFRMYAFKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYTCV 252
             D+S PD     Y  D FRMY FK++ C+R  SHDWTECP+ HPGE ARRRDPRK+ Y+  
Sbjct:    63 DLSGPDSPIDAYTCDHFRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGT 122

Query:   253 PCPEFRKGACPKGDGCEYAHGVFESWLHPAQYRTRLCKDEIGCARKVCFFAHKPEELR 310
              CPEFRKG C +GD CE++HGVFE WLHPA+YRT+ CKD   C R+VCFFAH P+++R
Sbjct:   123 ACPEFRKGCCKRGDACEFSHGVFECWLHPARYRTQPCKDGGNCRRRVCFFAHSPDQIR 180

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

TAIR|locus:2183339 PEI1 [Arabidopsis thaliana (taxid:3702)]

 Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
 Identities = 83/131 (63%), Positives = 97/131 (74%)

Query:   180 LSKDGTEKKEYPIDVSLPDINNGVYGTDDFRMYAFKIKPCSRAYSHDWTECPFVHPGENA 239
             LSK G     Y ID S+P+I++ +YG+D+FRMYA+KIK C R  SHDWTECP+ H GE A
Sbjct:    25 LSKPGNAGA-YEIDPSIPNIDDAIYGSDEFRMYAYKIKRCPRTRSHDWTECPYAHRGEKA 83

Query:   240 RRRDPRKYPYTCVPCPEFRKGACPKGDGCEYAHGVFESWLHPAQYRTRLCKDEIGCARKV 299
              RRDPR+Y Y  V CP FR GAC +GD CE+AHGVFE WLHPA+YRTR C     C RKV
Sbjct:    84 TRRDPRRYTYCAVACPAFRNGACHRGDSCEFAHGVFEYWLHPARYRTRACNAGNLCQRKV 143

Query:   300 CFFAHKPEELR 310
             CFFAH PE+LR
Sbjct:   144 CFFAHAPEQLR 154

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

UNIPROTKB|Q9FU27 LOC_Os01g09620 "Zinc finger CCCH domain-containing protein 2" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
 Identities = 73/107 (68%), Positives = 85/107 (79%)

Query:   204 YGTDDFRMYAFKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYTCVPCPEFRKGACP 263
             Y  D+FRMY FK++ C+R  SHDWTECPF HPGE ARRRDPRKY Y+   CP+FRKG C 
Sbjct:    72 YACDEFRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRDPRKYHYSGTACPDFRKGGCK 131

Query:   264 KGDGCEYAHGVFESWLHPAQYRTRLCKDEIGCARKVCFFAHKPEELR 310
             +GD CEYAHGVFE WLHPA+YRT+ CKD   C R+VCFFAH P++LR
Sbjct:   132 RGDACEYAHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTPDQLR 178

GO:0005634 "nucleus" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IC

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=IMP

GO:0010150 "leaf senescence" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q688R3	C3H33_ORYSJ	No assigned EC number	0.4458	0.8366	0.9118	yes	no
Q9XEE6	C3H29_ARATH	No assigned EC number	0.5225	0.8503	0.9329	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	655
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-15
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-14
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-14
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-13
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-10
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-08
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-07
pfam00023	33	pfam00023, Ank, Ankyrin repeat	2e-07
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	3e-07
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	8e-07
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-05
smart00356	27	smart00356, ZnF_C3H1, zinc finger	2e-05
smart00248	30	smart00248, ANK, ankyrin repeats	3e-05
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	1e-04
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	4e-04
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	8e-04
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	8e-04
PHA02859	209	PHA02859, PHA02859, ankyrin repeat protein; Provis	0.001
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	0.002
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	0.004
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	0.004

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 73.2 bits (180), Expect = 2e-15
 Identities = 38/97 (39%), Positives = 52/97 (53%), Gaps = 11/97 (11%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
           RTP+ +AA  G + ++K ++E G  +VN A   DG T LH A   G   + +VVKLLL  
Sbjct: 41  RTPLHLAAKNGHLEIVKLLLEKG-ADVN-ARDKDGNTPLHLAARNG---NLDVVKLLLKH 95

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLL 160
            ADVN  D  G  P+ L   A K   +     ++LLL
Sbjct: 96  GADVNARDKDGRTPLHL---AAK---NGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 70.5 bits (173), Expect = 1e-14
 Identities = 40/103 (38%), Positives = 52/103 (50%), Gaps = 21/103 (20%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
           RTP+ +AA  G + V+K ++E G  +VN A  +DG T LH A   G     E+VKLLL  
Sbjct: 8   RTPLHLAASNGHLEVVKLLLENG-ADVN-AKDNDGRTPLHLAAKNG---HLEIVKLLLEK 62

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLH-----SRKRAIELLLK 161
            ADVN  D  GN           +PLH          ++LLLK
Sbjct: 63  GADVNARDKDGN-----------TPLHLAARNGNLDVVKLLLK 94

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 68.4 bits (168), Expect = 2e-14
 Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 5/77 (6%)

Query: 55  GSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSF 114
           G+     +  T + +AA  G++ ++K ++E G  +VN A   DG TALH A   G   + 
Sbjct: 20  GADVNLGDTDTALHLAARNGNLEIVKLLLEHG-ADVN-AKDKDGNTALHLAARNG---NL 74

Query: 115 EVVKLLLSASADVNCVD 131
           E+VKLLL   AD+N  D
Sbjct: 75  EIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 65.7 bits (161), Expect = 2e-13
 Identities = 33/100 (33%), Positives = 48/100 (48%), Gaps = 23/100 (23%)

Query: 67  IMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASAD 126
           + +AA  G++ ++K ++E G  +VN     D  TALH A   G   + E+VKLLL   AD
Sbjct: 1   LHLAAKNGNLELVKLLLEKG-ADVN---LGDTDTALHLAARNG---NLEIVKLLLEHGAD 53

Query: 127 VNCVDVYGNKPVDLIPVAMKSPLH-----SRKRAIELLLK 161
           VN  D  GN           + LH          ++LLL+
Sbjct: 54  VNAKDKDGN-----------TALHLAARNGNLEIVKLLLE 82

Length = 91

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 56.1 bits (136), Expect = 2e-10
 Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 5/59 (8%)

Query: 63  ERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLL 121
            RT +  AA+ G + ++KY++E G V++NR    DG TALH A   G   + EV+KLLL
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKG-VDINR-TDEDGNTALHIAAENG---NLEVLKLLL 54

Length = 54

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 52.8 bits (127), Expect = 2e-08
 Identities = 26/71 (36%), Positives = 31/71 (43%), Gaps = 19/71 (26%)

Query: 96  SDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLH----- 150
            DG T LH A + G     EVVKLLL   ADVN  D  G            +PLH     
Sbjct: 5   EDGRTPLHLAASNG---HLEVVKLLLENGADVNAKDNDGR-----------TPLHLAAKN 50

Query: 151 SRKRAIELLLK 161
                ++LLL+
Sbjct: 51  GHLEIVKLLLE 61

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 52.5 bits (125), Expect = 2e-07
 Identities = 37/128 (28%), Positives = 54/128 (42%), Gaps = 11/128 (8%)

Query: 65  TPIMIAAMFGS-----VAVLKYVIETGKVN-VNRACGSDGFTALHCAVAGGANSSFEVVK 118
           TP+ +AA+ G+     + V K ++E G    VN     DG T LH A     N   ++V+
Sbjct: 108 TPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAAL---NGDADIVE 164

Query: 119 LLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVP 178
           LLL A AD N  + YG     L P A    +   K  ++  L      F  E + N  V 
Sbjct: 165 LLLEAGADPNSRNSYGVTA--LDPAAKNGRIELVKLLLDKGLHLSLLKFNLEGVANANVS 222

Query: 179 QLSKDGTE 186
           + +     
Sbjct: 223 KRNILNLT 230

Length = 235

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 47.2 bits (113), Expect = 2e-07
 Identities = 20/35 (57%), Positives = 20/35 (57%), Gaps = 3/35 (8%)

Query: 97  DGFTALHCAVAGGANSSFEVVKLLLSASADVNCVD 131
           DG T LH A   G     EVVKLLL A ADVN  D
Sbjct: 1   DGNTPLHLAARNG---HLEVVKLLLEAGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 52.7 bits (127), Expect = 3e-07
 Identities = 37/111 (33%), Positives = 54/111 (48%), Gaps = 20/111 (18%)

Query: 38  EKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVA-VLKYVIETGKVNVNRACGS 96
           E G DV+ P           + GF   TP+ +     +   V+K +I+ G  +VN A   
Sbjct: 71  EAGADVNAPE----------RCGF---TPLHLYLYNATTLDVIKLLIKAG-ADVN-AKDK 115

Query: 97  DGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKS 147
            G T LH     G N + +V++LLL   ADVN +D+YG  P+    V +KS
Sbjct: 116 VGRTPLH-VYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLA---VLLKS 162

Length = 471

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 46.2 bits (110), Expect = 8e-07
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 4/58 (6%)

Query: 83  IETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDL 140
           +E G +++N   G+ G T LH A   GA    E+V+ LL    D+N  D  G   +DL
Sbjct: 2   LEHGPIDLNATDGN-GNTPLHLAAKYGA---LELVQWLLKPGVDLNLRDSDGLTALDL 55

Length = 56

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 42.2 bits (100), Expect = 2e-05
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 9/63 (14%)

Query: 98  GFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIE 157
           G TALH A   G     E+VK LL    D+N  D  GN  + +   A     +     ++
Sbjct: 1   GRTALHKAAISG---RLELVKYLLEKGVDINRTDEDGNTALHI--AAE----NGNLEVLK 51

Query: 158 LLL 160
           LLL
Sbjct: 52  LLL 54

Length = 54

>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 10/22 (45%), Positives = 15/22 (68%)

Query: 252 VPCPEFRKGACPKGDGCEYAHG 273
             C  F++G CP+GD C++AH 
Sbjct: 5   ELCKFFKRGYCPRGDRCKFAHP 26

Length = 27

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 41.0 bits (97), Expect = 3e-05
 Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 3/33 (9%)

Query: 97  DGFTALHCAVAGGANSSFEVVKLLLSASADVNC 129
           DG T LH A   G   + EVVKLLL   AD+N 
Sbjct: 1   DGRTPLHLAAENG---NLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 13/89 (14%)

Query: 79  LKYVIETG-KVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKP 137
           + Y++  G  +N+    G   FT LH AV    N++ E VK LL   A+ N V+ YG+ P
Sbjct: 175 VNYLLSYGVPINIKDVYG---FTPLHYAVY---NNNPEFVKYLLDLGANPNLVNKYGDTP 228

Query: 138 VDLIPVAMKSPLHSRKRAIELLLKGDHTI 166
           + +   A+ +   + K   +LLL    +I
Sbjct: 229 LHI---AILN---NNKEIFKLLLNNGPSI 251

Length = 422

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 43.1 bits (102), Expect = 4e-04
 Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 32/105 (30%)

Query: 65  TPIMIAAM--FGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLS 122
           TP++ A      S ++++Y+++ G  NVN    SDG   LH  +        +++KLL+ 
Sbjct: 108 TPLLYAISKKSNSYSIVEYLLDNGA-NVN-IKNSDGENLLHLYLESNKID-LKILKLLID 164

Query: 123 ASADVNC----------------VDVYGNKPVDLIPVAMKSPLHS 151
              D+N                  DVYG            +PLH 
Sbjct: 165 KGVDINAKNRVNYLLSYGVPINIKDVYGF-----------TPLHY 198

Length = 422

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 41.9 bits (99), Expect = 8e-04
 Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 10/82 (12%)

Query: 67  IMIAAMFG--------SVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVK 118
           IM AA++         +V  ++ ++  G  +VN   G  G T LH  +   +    ++V+
Sbjct: 10  IMEAALYDYLLNASNVTVEEVRRLLAAGA-DVNFR-GEYGKTPLHLYLHYSSEKVKDIVR 67

Query: 119 LLLSASADVNCVDVYGNKPVDL 140
           LLL A ADVN  +  G  P+ L
Sbjct: 68  LLLEAGADVNAPERCGFTPLHL 89

Length = 471

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 36.8 bits (86), Expect = 8e-04
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 3/33 (9%)

Query: 97  DGFTALHCAVAGGANSSFEVVKLLLSASADVNC 129
           DG T LH A     N + E+VKLLL   AD+N 
Sbjct: 1   DGNTPLHLAAR---NGNLELVKLLLEHGADINA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 75  SVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYG 134
           +V +LK++IE G  +VN     +  +ALH  ++   N   E++K+L+ + + +   D  G
Sbjct: 65  NVEILKFLIENG-ADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDG 123

Query: 135 NKP 137
              
Sbjct: 124 KNL 126

Length = 209

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 40.6 bits (95), Expect = 0.002
 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 7/75 (9%)

Query: 65  TPIMIAAMF-GSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
           TP+ I+  +     +LK ++E G V+VN      G TALH ++      S   +KLLL  
Sbjct: 236 TPLHISVGYCKDYDILKLLLEHG-VDVNAKSYILGLTALHSSI-----KSERKLKLLLEY 289

Query: 124 SADVNCVDVYGNKPV 138
            AD+N ++ Y   P+
Sbjct: 290 GADINSLNSYKLTPL 304

Length = 477

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 35.8 bits (83), Expect = 0.004
 Identities = 15/42 (35%), Positives = 29/42 (69%), Gaps = 2/42 (4%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCA 105
            TP+ +AA +G++ +++++++ G V++N    SDG TAL  A
Sbjct: 17  NTPLHLAAKYGALELVQWLLKPG-VDLN-LRDSDGLTALDLA 56

Length = 56

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 40.0 bits (94), Expect = 0.004
 Identities = 29/124 (23%), Positives = 47/124 (37%), Gaps = 23/124 (18%)

Query: 14  YNKSSIL-LELSASDDISAFKREIE---EKGFDVDEPSFWYGRRIGSKKMGFEERTPIMI 69
                IL L +    DI+A K  +      G  ++               GF   TP+  
Sbjct: 153 KIDLKILKLLIDKGVDINA-KNRVNYLLSYGVPINIKD----------VYGF---TPLHY 198

Query: 70  AAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNC 129
           A    +   +KY+++ G  N N      G T LH A+    N++ E+ KLLL+    +  
Sbjct: 199 AVYNNNPEFVKYLLDLG-ANPN-LVNKYGDTPLHIAI---LNNNKEIFKLLLNNGPSIKT 253

Query: 130 VDVY 133
           +   
Sbjct: 254 IIET 257

Length = 422

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	655
KOG1595	528	consensus CCCH-type Zn-finger protein [General fun	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.87
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.86
PHA02859	209	ankyrin repeat protein; Provisional	99.82
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.81
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.81
PHA02743	166	Viral ankyrin protein; Provisional	99.8
PHA02859	209	ankyrin repeat protein; Provisional	99.79
PHA02791	284	ankyrin-like protein; Provisional	99.79
PHA02791	284	ankyrin-like protein; Provisional	99.78
PHA02878	477	ankyrin repeat protein; Provisional	99.78
PHA02878	477	ankyrin repeat protein; Provisional	99.78
PHA02875	413	ankyrin repeat protein; Provisional	99.77
PHA02874	434	ankyrin repeat protein; Provisional	99.76
PHA02875	413	ankyrin repeat protein; Provisional	99.76
PHA02946	446	ankyin-like protein; Provisional	99.75
PHA02741	169	hypothetical protein; Provisional	99.75
PHA02874	434	ankyrin repeat protein; Provisional	99.75
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.74
KOG0510	929	consensus Ankyrin repeat protein [General function	99.74
PHA02876	682	ankyrin repeat protein; Provisional	99.74
KOG0508	615	consensus Ankyrin repeat protein [General function	99.74
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.73
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.73
PHA02736	154	Viral ankyrin protein; Provisional	99.73
PHA03100	480	ankyrin repeat protein; Provisional	99.72
PHA03095	471	ankyrin-like protein; Provisional	99.72
PHA02798	489	ankyrin-like protein; Provisional	99.72
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.71
PHA02989	494	ankyrin repeat protein; Provisional	99.71
PHA03100	480	ankyrin repeat protein; Provisional	99.7
PHA02884	300	ankyrin repeat protein; Provisional	99.7
PHA02946	446	ankyin-like protein; Provisional	99.7
PHA02989	494	ankyrin repeat protein; Provisional	99.7
PHA03095	471	ankyrin-like protein; Provisional	99.7
PHA02876	682	ankyrin repeat protein; Provisional	99.7
PHA02795	437	ankyrin-like protein; Provisional	99.69
PHA02798	489	ankyrin-like protein; Provisional	99.69
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.68
KOG0508	615	consensus Ankyrin repeat protein [General function	99.67
KOG0514	452	consensus Ankyrin repeat protein [General function	99.67
PHA02917	661	ankyrin-like protein; Provisional	99.66
KOG0510	929	consensus Ankyrin repeat protein [General function	99.64
PHA02795	437	ankyrin-like protein; Provisional	99.64
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.63
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.63
PHA02741	169	hypothetical protein; Provisional	99.63
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.61
PHA02743	166	Viral ankyrin protein; Provisional	99.59
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.58
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.58
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.57
PHA02730	672	ankyrin-like protein; Provisional	99.57
PHA02917	661	ankyrin-like protein; Provisional	99.57
PHA02884	300	ankyrin repeat protein; Provisional	99.55
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.54
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.53
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.53
PHA02730	672	ankyrin-like protein; Provisional	99.52
PHA02736	154	Viral ankyrin protein; Provisional	99.51
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.48
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.48
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.47
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.46
KOG0514	452	consensus Ankyrin repeat protein [General function	99.45
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.43
PHA02792	631	ankyrin-like protein; Provisional	99.41
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.41
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.41
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.41
PHA02792	631	ankyrin-like protein; Provisional	99.4
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.38
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.36
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.35
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.33
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.31
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.31
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.27
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.27
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.25
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.18
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.18
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.16
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.15
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.09
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.07
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.03
KOG1595	528	consensus CCCH-type Zn-finger protein [General fun	98.94
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	98.76
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	98.7
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.67
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.55
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.51
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.48
KOG1677	332	consensus CCCH-type Zn-finger protein [General fun	98.48
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.47
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.34
PF13606	30	Ank_3: Ankyrin repeat	98.27
PF13606	30	Ank_3: Ankyrin repeat	98.26
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.23
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.23
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.23
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.14
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.12
KOG0522	560	consensus Ankyrin repeat protein [General function	98.03
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.02
KOG0522	560	consensus Ankyrin repeat protein [General function	97.97
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	97.73
COG5063	351	CTH1 CCCH-type Zn-finger protein [General function	97.73
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.71
KOG0511	516	consensus Ankyrin repeat protein [General function	97.67
KOG2384	223	consensus Major histocompatibility complex protein	97.62
KOG2384	223	consensus Major histocompatibility complex protein	97.37
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.26
KOG0511	516	consensus Ankyrin repeat protein [General function	97.14
KOG0520	975	consensus Uncharacterized conserved protein, conta	96.98
KOG2494	331	consensus C3H1-type Zn-finger protein [Transcripti	96.95
KOG0521	785	consensus Putative GTPase activating proteins (GAP	96.8
PF00642	27	zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si	96.53
KOG2505	591	consensus Ankyrin repeat protein [General function	95.8
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	95.79
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	95.59
KOG1677	332	consensus CCCH-type Zn-finger protein [General fun	95.51
KOG2505	591	consensus Ankyrin repeat protein [General function	95.47
PF00642	27	zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si	95.26
COG5063	351	CTH1 CCCH-type Zn-finger protein [General function	95.08
smart00356	27	ZnF_C3H1 zinc finger.	95.07
smart00356	27	ZnF_C3H1 zinc finger.	94.57
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	94.48
PF14608	19	zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type	92.79
KOG2333	614	consensus Uncharacterized conserved protein [Gener	90.44
KOG1040	325	consensus Polyadenylation factor I complex, subuni	89.52
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	88.65
KOG1492	377	consensus C3H1-type Zn-finger protein [General fun	88.52
KOG3702	681	consensus Nuclear polyadenylated RNA binding prote	88.5

>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=100.00  E-value=2.5e-82  Score=683.31  Aligned_cols=501  Identities=41%  Similarity=0.606  Sum_probs=391.2

Q ss_pred             CCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccc
Q 006236           15 NKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRAC   94 (655)
Q Consensus        15 ~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~   94 (655)
                      ...|.|.+.++.+++..|++++++....++...+||+++++.+.|..+.+|+|++|+.+|.++++++|+..+..++|..|
T Consensus        10 ~~ls~~~e~~~~~~~~~~k~~~~e~~~~~~~~~~~~r~~~~~k~~~~~qR~~~~v~~~~Gs~~~~~~i~~~~~~e~~~~C   89 (528)
T KOG1595|consen   10 RALSCLSEFEAPNDYAYLKEFRVEQPLFLQHKCLQHRPFVCFKWHFLNQRRRRPVARRDGSFNYSPDIYCTKYDEVTGIC   89 (528)
T ss_pred             hhhhcchhhccccHHHHHHHHHHhchhhhhhhhcccccchhhhhhhhccccccchhhhcCccccccceeecchhhccccC
Confidence            34577779999999999999999889999999999999999999999999999999999999999999999889999986


Q ss_pred             CCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccCC
Q 006236           95 GSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVN  174 (655)
Q Consensus        95 d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~  174 (655)
                      ..++.   |+++.+...+..+.+..|+.+++..+.+|..|+-+...+.........+...+++.|++.+.--.+.+++..
T Consensus        90 ~~~~~---~C~~~g~s~~~~e~~~hL~~~k~~~~~tda~g~~~~~v~~~~~~~~~~~~r~~~~~l~e~~~~~~~~~~e~~  166 (528)
T KOG1595|consen   90 PDGDE---HCAVLGRSVGDTERTYHLRYYKTLPCVTDARGNCVKNVLHCAFAHGPNDLRPPVEDLLELQGGSGLPDDEPE  166 (528)
T ss_pred             CCCcc---cchhcccccCCcceeEeccccccccCccccCCCcccCcccccccCCccccccHHHHHHhcccccCccCCCcc
Confidence            55444   999888777779999999999999999999998775443211123446667888888887631111112222


Q ss_pred             CCcccccccCcccccccccCCcccccCCccccccccccccccccccccccCCCCCccccCCCCCCCCCCCCCCCCCcCCC
Q 006236          175 IPVPQLSKDGTEKKEYPIDVSLPDINNGVYGTDDFRMYAFKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYTCVPC  254 (655)
Q Consensus       175 tpl~~l~~~~~~~keypvdlsl~di~~~~y~sde~rm~sfKvrpCsrayshDwteCp~~Hp~EnarRRdPr~y~Ys~~~C  254 (655)
                      ....      ....+|++|..++||+ ++|++|+|+||.||+++|.|+++|||++|||+|++||+||||||+|+|+++.|
T Consensus       167 ~~~~------~~~~~y~~Dp~~pdi~-~~ys~DeFrMy~fKir~C~R~~shDwteCPf~HpgEkARRRDPRkyhYs~tpC  239 (528)
T KOG1595|consen  167 VESK------LDVTEYPEDPSWPDIN-GIYSSDEFRMYSFKIRRCSRPRSHDWTECPFAHPGEKARRRDPRKYHYSSTPC  239 (528)
T ss_pred             cccc------cccccccCCCCccccc-ccccccceEEEeeeecccCCccCCCcccCCccCCCcccccCCcccccccCccC
Confidence            1110      1122999999999999 89999999999999999999999999999999999999999999999999999


Q ss_pred             CCccCCCCCCCCcccccCCccccccCCcccccccccCCCCCCCCCCCCCCCCCCcccCcCCCCCCCCC-CCCCCCCcccc
Q 006236          255 PEFRKGACPKGDGCEYAHGVFESWLHPAQYRTRLCKDEIGCARKVCFFAHKPEELRPVYASTGSAMPS-PSPVSASAVDM  333 (655)
Q Consensus       255 P~~rkg~C~~Gd~C~yaH~~~E~~~HP~~ykt~~C~~~~~C~~~~C~faH~~~elr~~~~~~~~~~~~-~~~~~~~~~~~  333 (655)
                      |+||+|.|++||.|+||||+||||+||.+|||++|+++++|+|.+|||||.++|||++++++|+++++ |+++.++ -.+
T Consensus       240 PefrkG~C~rGD~CEyaHgvfEcwLHPa~YRT~~CkDg~~C~RrvCfFAH~~eqLR~l~~s~~s~~~~sp~~s~~s-p~~  318 (528)
T KOG1595|consen  240 PEFRKGSCERGDSCEYAHGVFECWLHPARYRTRKCKDGGYCPRRVCFFAHSPEQLRPLPPSTGSDRPSSPSSSSAS-PMM  318 (528)
T ss_pred             cccccCCCCCCCccccccceehhhcCHHHhccccccCCCCCccceEeeecChHHhcccCCCCCCCCCCCcccccCC-CCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999998 5554321 112


Q ss_pred             cccCCCCCCCCCCCCCCCCCCCCCCccc-CCCCCCC-CCCCCCCC-CCCCCccCCc-cccccccCcchhhhhhccccchh
Q 006236          334 TTLSPLSLGSASMPLPATSTPPMSPLAA-ASSPKSG-NLWQNKVN-LTPPALQLPG-SRLKTAFSARDLDLLLGLENRTS  409 (655)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~p~sp~~~-~~~~~~~-~~w~~~~~-~~~p~l~l~~-srl~~~~~ar~~~~~~~~~~~~~  409 (655)
                      +...++      .-+|++.+||+||++. .++|+.. +.|++.++ ++.|+++|++ |||+++++||||+..-+++.   
T Consensus       319 ~~~~~~------~~s~~~~~~p~sp~~~~~~~~~~~~~s~~~~~~~~~~p~~~~~~~Srl~s~~~a~~i~~~~~~~~---  389 (528)
T KOG1595|consen  319 ASLRSL------PFSPSPGSPPLSPSANGVSSPIASGGSRSLNSNSPSSPAAPLRSFSRLSSSLSAADISMSSPMNL---  389 (528)
T ss_pred             cccccC------CCCCCCCCCCCCccccccccccccccccccCCCCCCCcccccccccccccccccccccccccccc---
Confidence            222222      2234448999999883 3344444 45655554 4899999999 99999999999865434331   


Q ss_pred             hHHHHHHHhhhcccCCCCCCCcccccccccccchHHHhhhcCCCchhhhccccccCCCCccccCCchhhhhhhhhhhhhc
Q 006236          410 NLQQQQLLDEISSLSSPSSWSKEYSRIGDVNRNLDKVFESLDPSMLSQLQGMSQKQSTPTQLQSPTGLQMRQNMNQLRAS  489 (655)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  489 (655)
                                                     -||+++|++++.+.                  ..+++|+.  +     +
T Consensus       390 -------------------------------~~l~~~f~s~~sss------------------l~~~~~~~--~-----~  413 (528)
T KOG1595|consen  390 -------------------------------GNLSELFSSPDSSS------------------LNPQLQVL--S-----S  413 (528)
T ss_pred             -------------------------------ccchhhhcCccccc------------------cchhhhhc--c-----c
Confidence                                           17999999987631                  11233311  1     1


Q ss_pred             CCCCCCCCCCCCCC---CCCCCCchhHHHh--hhhhhhh-HHHHhhh--hhhhccccccccccCCCCCCCCCCCCCCCCC
Q 006236          490 YPAANLSSSPVRKP---SSFGYDSSAAVAA--AVMNSRS-SAFAKRS--QSFIDRGAVTSRAGLSMVSNPPTIRSSNLSD  561 (655)
Q Consensus       490 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~--~~~~~r~-~a~a~r~--~~~~~r~~~~~~~~~~~~~~~~~~~~~~~s~  561 (655)
                      +     +.+|+..+   ..++++.+.+...  .+|++|. .++++|+  .++        +.+.+    ..+.-....+|
T Consensus       414 ~-----~tsP~~~~~~~~~~~~e~s~~~~~~~~~~~~r~l~~~l~~~~~~s~--------~~~~~----~~~~~~~~~~d  476 (528)
T KOG1595|consen  414 A-----PTSPVFTDTASFGSSVESSPAMEGRSQVMSSRELRASLKRSSTLSD--------KPAMN----SSGQFSFNNSD  476 (528)
T ss_pred             C-----CcCCcCCcccccccccccchhhhcccccccchhhhhhhcccccccc--------ccccc----CccccccccCC
Confidence            1     23455553   2245665555555  6899998 7887776  222        11111    11111235589


Q ss_pred             CCCCCC-CCCcccchhhhcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCchhhhhhccCCC
Q 006236          562 WSSPDG-KLDWGVQGDELNKLKKSASFGFRSNNITTPTTKGFTPSSSNVDEPDVSWVNSLVKDVT  625 (655)
Q Consensus       562 w~s~~g-k~dw~~~~~e~~~~r~s~sf~~~~~~~~~~~~~~~~~~~~~~~epd~swv~~~~~~~~  625 (655)
                      ||+.+| |+||+||+|||+|+|++.||+.+.++                 ||||||||+||||.+
T Consensus       477 ~g~~~g~~~d~~~~~~~l~~~r~~~s~~~~~~~-----------------~pd~swv~~ll~~~~  524 (528)
T KOG1595|consen  477 WGPRAGELLDWGVQSDLLNKLRESTSFELGSAG-----------------EPDVSWVQSLLKEPA  524 (528)
T ss_pred             cCcccCcccchhhhHHHHhhcccCcccccCCCC-----------------CcCcchhhhhccccc
Confidence            999999 99999999999999999999988664                 999999999999986

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=2.1e-22  Score=192.69  Aligned_cols=143  Identities=21%  Similarity=0.273  Sum_probs=131.9

Q ss_pred             CCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccc
Q 006236           15 NKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRAC   94 (655)
Q Consensus        15 ~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~   94 (655)
                      +|.++||.|+..|..+.+..||.+.+..+|.+             |..|+||||+||..|+.++|+.|+....+|+|.. 
T Consensus        37 D~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddk-------------DdaGWtPlhia~s~g~~evVk~Ll~r~~advna~-  102 (226)
T KOG4412|consen   37 DGRTPLHWACSFGHVEIVYFLLSQPNVKPDDK-------------DDAGWTPLHIAASNGNDEVVKELLNRSGADVNAT-  102 (226)
T ss_pred             cCCceeeeeeecCchhHHHHHHhcCCCCCCCc-------------cccCCchhhhhhhcCcHHHHHHHhcCCCCCccee-
Confidence            78899999999999988888887788888887             4899999999999999999999999933999999 


Q ss_pred             CCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccCC
Q 006236           95 GSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVN  174 (655)
Q Consensus        95 d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~  174 (655)
                      +..|.|+||||+..|.   .+|+.+|+++|+.++++|..|.||||-|+.      .|.++++++|+..|+.+|..|..|.
T Consensus       103 tn~G~T~LHyAagK~r---~eIaqlLle~ga~i~~kD~~~qtplHRAAa------vGklkvie~Li~~~a~~n~qDk~G~  173 (226)
T KOG4412|consen  103 TNGGQTCLHYAAGKGR---LEIAQLLLEKGALIRIKDKQGQTPLHRAAA------VGKLKVIEYLISQGAPLNTQDKYGF  173 (226)
T ss_pred             cCCCcceehhhhcCCh---hhHHHHHHhcCCCCcccccccCchhHHHHh------ccchhhHHHHHhcCCCCCcccccCc
Confidence            9999999999999999   999999999999999999999999999987      8999999999999999999999999


Q ss_pred             CCcccc
Q 006236          175 IPVPQL  180 (655)
Q Consensus       175 tpl~~l  180 (655)
                      ||+...
T Consensus       174 TpL~~a  179 (226)
T KOG4412|consen  174 TPLHHA  179 (226)
T ss_pred             cHHHHH
Confidence            998443

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=9.2e-22  Score=188.33  Aligned_cols=140  Identities=21%  Similarity=0.251  Sum_probs=131.6

Q ss_pred             ccCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccc
Q 006236           13 LYNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNR   92 (655)
Q Consensus        13 ~~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~   92 (655)
                      +..|.+|||.||..|+.+.|+.||-+-|+|+|...             ..|+|||||||..|..+|+.+||++| +.|+.
T Consensus        69 DdaGWtPlhia~s~g~~evVk~Ll~r~~advna~t-------------n~G~T~LHyAagK~r~eIaqlLle~g-a~i~~  134 (226)
T KOG4412|consen   69 DDAGWTPLHIAASNGNDEVVKELLNRSGADVNATT-------------NGGQTCLHYAAGKGRLEIAQLLLEKG-ALIRI  134 (226)
T ss_pred             cccCCchhhhhhhcCcHHHHHHHhcCCCCCcceec-------------CCCcceehhhhcCChhhHHHHHHhcC-CCCcc
Confidence            46799999999999999999999886699999985             89999999999999999999999999 99999


Q ss_pred             ccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCccccc
Q 006236           93 ACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEEL  172 (655)
Q Consensus        93 ~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~  172 (655)
                      + |..|.||||-|+..|+   ++++++|+..|+.+|.+|..|+||||.|..      .++.++..+|+++||+++.+|.+
T Consensus       135 k-D~~~qtplHRAAavGk---lkvie~Li~~~a~~n~qDk~G~TpL~~al~------e~~~d~a~lLV~~gAd~~~edke  204 (226)
T KOG4412|consen  135 K-DKQGQTPLHRAAAVGK---LKVIEYLISQGAPLNTQDKYGFTPLHHALA------EGHPDVAVLLVRAGADTDREDKE  204 (226)
T ss_pred             c-ccccCchhHHHHhccc---hhhHHHHHhcCCCCCcccccCccHHHHHHh------ccCchHHHHHHHhccceeecccc
Confidence            9 9999999999999999   999999999999999999999999999964      78999999999999999999987


Q ss_pred             CCCCc
Q 006236          173 VNIPV  177 (655)
Q Consensus       173 g~tpl  177 (655)
                      | |++
T Consensus       205 ~-t~~  208 (226)
T KOG4412|consen  205 G-TAL  208 (226)
T ss_pred             C-chH
Confidence            7 664

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.82  E-value=1.1e-19  Score=182.66  Aligned_cols=146  Identities=23%  Similarity=0.286  Sum_probs=100.9

Q ss_pred             ccccCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcC--CHHHHHHHHHcCCC
Q 006236           11 GALYNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFG--SVAVLKYVIETGKV   88 (655)
Q Consensus        11 ~l~~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G--~~evvk~LL~~G~a   88 (655)
                      .++....+||+.|+..|+.+.++.++..    +|..             |..|.||||+|+..+  +.+++++||+.| +
T Consensus        16 ~~~~~~~~pL~~A~~~~~~~~vk~Li~~----~n~~-------------~~~g~TpLh~a~~~~~~~~eiv~~Ll~~g-a   77 (209)
T PHA02859         16 YLFYRYCNPLFYYVEKDDIEGVKKWIKF----VNDC-------------NDLYETPIFSCLEKDKVNVEILKFLIENG-A   77 (209)
T ss_pred             HHhhccCcHHHHHHHhCcHHHHHHHHHh----hhcc-------------CccCCCHHHHHHHcCCCCHHHHHHHHHCC-C
Confidence            3345567777777777888777777652    4444             366778888777643  677788888777 7


Q ss_pred             ccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCc
Q 006236           89 NVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFE  168 (655)
Q Consensus        89 DvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~  168 (655)
                      |+|.+.+..|.||||+|+..+.....+++++|+++|+|+|.+|..|.||||+|+.    ...++.+++++|+++|++++.
T Consensus        78 dvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~----~~~~~~~iv~~Li~~gadin~  153 (209)
T PHA02859         78 DVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMC----NFNVRINVIKLLIDSGVSFLN  153 (209)
T ss_pred             CCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH----hccCCHHHHHHHHHcCCCccc
Confidence            7777622467778887765431112777777777788887777778888877653    123567777877777777777


Q ss_pred             ccccCCCCcc
Q 006236          169 EEELVNIPVP  178 (655)
Q Consensus       169 ~d~~g~tpl~  178 (655)
                      +|.+|.+++.
T Consensus       154 ~d~~g~t~Lh  163 (209)
T PHA02859        154 KDFDNNNILY  163 (209)
T ss_pred             ccCCCCcHHH
Confidence            7777777775

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.81  E-value=5.5e-20  Score=203.56  Aligned_cols=144  Identities=26%  Similarity=0.318  Sum_probs=135.0

Q ss_pred             chHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccCC
Q 006236           17 SSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGS   96 (655)
Q Consensus        17 ~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~   96 (655)
                      ..-+..|+..|+++.++.+++.+|.+++..|             .+|.|+||+||.+++++++++||++| +|||..++.
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D-------------~~g~tlLHWAAiNNrl~v~r~li~~g-advn~~gG~  110 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESEGESVNNPD-------------REGVTLLHWAAINNRLDVARYLISHG-ADVNAIGGV  110 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhcCcCCCCCC-------------cCCccceeHHHHcCcHHHHHHHHHcC-CCccccCCC
Confidence            5678899999999999999997799999985             79999999999999999999999999 999999778


Q ss_pred             CCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccCCCC
Q 006236           97 DGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIP  176 (655)
Q Consensus        97 ~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~tp  176 (655)
                      -+.||||||+++|+   +.+|++|+++|||++.+|.+|.+|||+|+.      .++.-++-+||.+|+|++.+|.+|+||
T Consensus       111 l~stPLHWAar~G~---~~vv~lLlqhGAdpt~~D~~G~~~lHla~~------~~~~~~vayll~~~~d~d~~D~~grTp  181 (600)
T KOG0509|consen  111 LGSTPLHWAARNGH---ISVVDLLLQHGADPTLKDKQGLTPLHLAAQ------FGHTALVAYLLSKGADIDLRDNNGRTP  181 (600)
T ss_pred             CCCCcchHHHHcCc---HHHHHHHHHcCCCCceecCCCCcHHHHHHH------hCchHHHHHHHHhcccCCCcCCCCCCH
Confidence            99999999999999   999999999999999999999999999997      899999999999999999999999999


Q ss_pred             ccccccc
Q 006236          177 VPQLSKD  183 (655)
Q Consensus       177 l~~l~~~  183 (655)
                      +..++.+
T Consensus       182 LmwAayk  188 (600)
T KOG0509|consen  182 LMWAAYK  188 (600)
T ss_pred             HHHHHHh
Confidence            8655444

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.81  E-value=7.4e-20  Score=202.56  Aligned_cols=148  Identities=23%  Similarity=0.291  Sum_probs=131.7

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA   93 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~   93 (655)
                      .+|.+.||.||.++.++.++.+|+ +|++||..+            +.-+.|||||||++|++.+|++|+++| ||++.+
T Consensus        76 ~~g~tlLHWAAiNNrl~v~r~li~-~gadvn~~g------------G~l~stPLHWAar~G~~~vv~lLlqhG-Adpt~~  141 (600)
T KOG0509|consen   76 REGVTLLHWAAINNRLDVARYLIS-HGADVNAIG------------GVLGSTPLHWAARNGHISVVDLLLQHG-ADPTLK  141 (600)
T ss_pred             cCCccceeHHHHcCcHHHHHHHHH-cCCCccccC------------CCCCCCcchHHHHcCcHHHHHHHHHcC-CCCcee
Confidence            467777777777777777666665 999999987            577899999999999999999999999 999999


Q ss_pred             cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCccc-cc
Q 006236           94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEE-EL  172 (655)
Q Consensus        94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d-~~  172 (655)
                       |..|.|+||.|+.+|+   ..+|-+||.+|+|+|.+|.+|+||||+|+.      .+....+..||..|+.+...| ++
T Consensus       142 -D~~G~~~lHla~~~~~---~~~vayll~~~~d~d~~D~~grTpLmwAay------kg~~~~v~~LL~f~a~~~~~d~~~  211 (600)
T KOG0509|consen  142 -DKQGLTPLHLAAQFGH---TALVAYLLSKGADIDLRDNNGRTPLMWAAY------KGFALFVRRLLKFGASLLLTDDNH  211 (600)
T ss_pred             -cCCCCcHHHHHHHhCc---hHHHHHHHHhcccCCCcCCCCCCHHHHHHH------hcccHHHHHHHHhccccccccccc
Confidence             9999999999999999   999999999999999999999999999986      677666999999999999987 99


Q ss_pred             CCCCcccccccCc
Q 006236          173 VNIPVPQLSKDGT  185 (655)
Q Consensus       173 g~tpl~~l~~~~~  185 (655)
                      |.||++.+...++
T Consensus       212 g~TpLHwa~~~gN  224 (600)
T KOG0509|consen  212 GNTPLHWAVVGGN  224 (600)
T ss_pred             CCchHHHHHhcCC
Confidence            9999966554444

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.80  E-value=5.3e-19  Score=171.32  Aligned_cols=137  Identities=13%  Similarity=0.215  Sum_probs=120.0

Q ss_pred             cCCchHHHHHHHhCCHHHHHH---HHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHH---HHHHHHcCC
Q 006236           14 YNKSSILLELSASDDISAFKR---EIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAV---LKYVIETGK   87 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~---LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~ev---vk~LL~~G~   87 (655)
                      ..+.++||+|++.|++..+++   +|.+.|.+++..+             ..|+||||+|+.+|+.++   +++|++.| 
T Consensus        18 ~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d-------------~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~G-   83 (166)
T PHA02743         18 EDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYD-------------HHGRQCTHMVAWYDRANAVMKIELLVNMG-   83 (166)
T ss_pred             cCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccC-------------CCCCcHHHHHHHhCccCHHHHHHHHHHcC-
Confidence            346689999999999976655   4556888888874             889999999999988654   89999999 


Q ss_pred             CccccccC-CCCChHHHHHHHcCCCChHHHHHHHHh-CCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCC
Q 006236           88 VNVNRACG-SDGFTALHCAVAGGANSSFEVVKLLLS-ASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHT  165 (655)
Q Consensus        88 aDvN~~~d-~~G~TpLH~Aa~~G~~~~~eiVklLL~-~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAd  165 (655)
                      +++|.+ + ..|.||||+|+..|+   .+++++|+. .|++++.+|..|.||||+|+.      .++.+++++|+.+|++
T Consensus        84 adin~~-d~~~g~TpLh~A~~~g~---~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~------~~~~~iv~~Ll~~ga~  153 (166)
T PHA02743         84 ADINAR-ELGTGNTLLHIAASTKN---YELAEWLCRQLGVNLGAINYQHETAYHIAYK------MRDRRMMEILRANGAV  153 (166)
T ss_pred             CCCCCC-CCCCCCcHHHHHHHhCC---HHHHHHHHhccCCCccCcCCCCCCHHHHHHH------cCCHHHHHHHHHcCCC
Confidence            999998 6 589999999999999   999999995 799999999999999999987      7899999999999999


Q ss_pred             CCcccccCC
Q 006236          166 IFEEEELVN  174 (655)
Q Consensus       166 in~~d~~g~  174 (655)
                      ++..+..|.
T Consensus       154 ~~~~~~~~~  162 (166)
T PHA02743        154 CDDPLSIGL  162 (166)
T ss_pred             CCCcccCCc
Confidence            997665543

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.79  E-value=6.7e-19  Score=176.86  Aligned_cols=146  Identities=18%  Similarity=0.175  Sum_probs=124.3

Q ss_pred             ccCCchHHHHHHHhC--CHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHc---CCHHHHHHHHHcCC
Q 006236           13 LYNKSSILLELSASD--DISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMF---GSVAVLKYVIETGK   87 (655)
Q Consensus        13 ~~~g~s~LL~AAa~g--d~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~---G~~evvk~LL~~G~   87 (655)
                      ...|.|+||.|+..+  +.+.++.+ .++|+++|.++            +..|.||||+|+..   ++.+++++|+++| 
T Consensus        48 ~~~g~TpLh~a~~~~~~~~eiv~~L-l~~gadvn~~~------------~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~g-  113 (209)
T PHA02859         48 NDLYETPIFSCLEKDKVNVEILKFL-IENGADVNFKT------------RDNNLSALHHYLSFNKNVEPEILKILIDSG-  113 (209)
T ss_pred             CccCCCHHHHHHHcCCCCHHHHHHH-HHCCCCCCccC------------CCCCCCHHHHHHHhCccccHHHHHHHHHCC-
Confidence            356889999988754  55555544 55999999874            35799999998864   4799999999999 


Q ss_pred             CccccccCCCCChHHHHHHHc--CCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCC
Q 006236           88 VNVNRACGSDGFTALHCAVAG--GANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHT  165 (655)
Q Consensus        88 aDvN~~~d~~G~TpLH~Aa~~--G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAd  165 (655)
                      +|+|.+ +..|.||||+|+..  ++   .+++++|++.|++++.+|.+|.||||.++.     ..++.+++++|+++|++
T Consensus       114 adin~~-d~~G~TpLh~a~~~~~~~---~~iv~~Li~~gadin~~d~~g~t~Lh~~a~-----~~~~~~iv~~Ll~~Gad  184 (209)
T PHA02859        114 SSITEE-DEDGKNLLHMYMCNFNVR---INVIKLLIDSGVSFLNKDFDNNNILYSYIL-----FHSDKKIFDFLTSLGID  184 (209)
T ss_pred             CCCCCc-CCCCCCHHHHHHHhccCC---HHHHHHHHHcCCCcccccCCCCcHHHHHHH-----hcCCHHHHHHHHHcCCC
Confidence            999998 99999999998763  56   999999999999999999999999996543     26789999999999999


Q ss_pred             CCcccccCCCCccccc
Q 006236          166 IFEEEELVNIPVPQLS  181 (655)
Q Consensus       166 in~~d~~g~tpl~~l~  181 (655)
                      ++.+|..|.+|+..+.
T Consensus       185 i~~~d~~g~tpl~la~  200 (209)
T PHA02859        185 INETNKSGYNCYDLIK  200 (209)
T ss_pred             CCCCCCCCCCHHHHHh
Confidence            9999999999986553

>PHA02791 ankyrin-like protein; Provisional

Probab=99.79  E-value=9.3e-19  Score=183.86  Aligned_cols=149  Identities=15%  Similarity=0.117  Sum_probs=95.2

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCC----cc--------------cccccCCccCCCCCChHHHHHHHcCC
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPS----FW--------------YGRRIGSKKMGFEERTPIMIAAMFGS   75 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~d----lw--------------~g~~~~~~~~d~~G~TPLh~AA~~G~   75 (655)
                      .+|.|+||+|+..|+.+.++.++. .|+++|..+    +.              .....+....|.+|+||||+|+..|+
T Consensus        28 ~~G~TpLh~Aa~~g~~eiv~~Ll~-~ga~~n~~d~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~  106 (284)
T PHA02791         28 VHGHSALYYAIADNNVRLVCTLLN-AGALKNLLENEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGN  106 (284)
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHH-CcCCCcCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC
Confidence            346666666666666555554443 566655433    00              00111222235677777777777777


Q ss_pred             HHHHHHHHHcCCCccccccCCCC-ChHHHHHHHcCCCChHHHHHHHHhCCCCCcccC-CCCCCccchhhhccCCCCcChH
Q 006236           76 VAVLKYVIETGKVNVNRACGSDG-FTALHCAVAGGANSSFEVVKLLLSASADVNCVD-VYGNKPVDLIPVAMKSPLHSRK  153 (655)
Q Consensus        76 ~evvk~LL~~G~aDvN~~~d~~G-~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D-~~G~TPLhlAa~~~~~~~~g~~  153 (655)
                      .+++++|+++| +++|.. +..| .||||+|+..|+   .++|++||+.+.+.  .| ..|.||||+|+.      .|+.
T Consensus       107 ~eivk~Ll~~g-adin~~-~~~g~~TpL~~Aa~~g~---~eivk~LL~~~~~~--~d~~~g~TpLh~Aa~------~g~~  173 (284)
T PHA02791        107 MQTVKLFVKKN-WRLMFY-GKTGWKTSFYHAVMLND---VSIVSYFLSEIPST--FDLAILLSCIHITIK------NGHV  173 (284)
T ss_pred             HHHHHHHHHCC-CCcCcc-CCCCCcHHHHHHHHcCC---HHHHHHHHhcCCcc--cccccCccHHHHHHH------cCCH
Confidence            77777777777 777766 5555 367777777777   77777777765433  22 246777777776      7778


Q ss_pred             HHHHHHHhCCCCCCcccccCCCC
Q 006236          154 RAIELLLKGDHTIFEEEELVNIP  176 (655)
Q Consensus       154 eivelLL~~GAdin~~d~~g~tp  176 (655)
                      +++++||++|++++.+|..|.+|
T Consensus       174 eiv~lLL~~gAd~n~~d~~g~t~  196 (284)
T PHA02791        174 DMMILLLDYMTSTNTNNSLLFIP  196 (284)
T ss_pred             HHHHHHHHCCCCCCcccCCCCCh
Confidence            88888888888888877777765

>PHA02791 ankyrin-like protein; Provisional

Probab=99.78  E-value=1.6e-18  Score=182.16  Aligned_cols=105  Identities=17%  Similarity=0.212  Sum_probs=92.3

Q ss_pred             CCCC-ChHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCc-
Q 006236           60 GFEE-RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKP-  137 (655)
Q Consensus        60 d~~G-~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TP-  137 (655)
                      +..| .||||+|+..|+.+++++||+++ .+...  ...|.||||+|+..|+   .+++++||++|+++|.+|..|.|| 
T Consensus       124 ~~~g~~TpL~~Aa~~g~~eivk~LL~~~-~~~~d--~~~g~TpLh~Aa~~g~---~eiv~lLL~~gAd~n~~d~~g~t~~  197 (284)
T PHA02791        124 GKTGWKTSFYHAVMLNDVSIVSYFLSEI-PSTFD--LAILLSCIHITIKNGH---VDMMILLLDYMTSTNTNNSLLFIPD  197 (284)
T ss_pred             CCCCCcHHHHHHHHcCCHHHHHHHHhcC-Ccccc--cccCccHHHHHHHcCC---HHHHHHHHHCCCCCCcccCCCCChH
Confidence            4666 59999999999999999999987 44321  2358999999999999   999999999999999999999987 


Q ss_pred             cchhhhccCCCCcChHHHHHHHHhCCCCCCcccccCCCCc
Q 006236          138 VDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPV  177 (655)
Q Consensus       138 LhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~tpl  177 (655)
                      ||+|+.      .++.+++++||++|++++.+|.++ +++
T Consensus       198 L~~Aa~------~~~~e~v~lLl~~Ga~in~~~~~~-~~l  230 (284)
T PHA02791        198 IKLAID------NKDLEMLQALFKYDINIYSVNLEN-VLL  230 (284)
T ss_pred             HHHHHH------cCCHHHHHHHHHCCCCCccCcccC-ccC
Confidence            999997      999999999999999999988744 444

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.78  E-value=1.1e-18  Score=195.25  Aligned_cols=140  Identities=21%  Similarity=0.270  Sum_probs=127.6

Q ss_pred             CchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccC
Q 006236           16 KSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACG   95 (655)
Q Consensus        16 g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d   95 (655)
                      |.|+||.||..|+.+.++.+|. .|+++|..+             ..|.||||+|+..|+.+++++|++.| +++|.+ +
T Consensus       168 g~tpLh~A~~~~~~~iv~~Ll~-~gad~n~~d-------------~~g~tpLh~A~~~~~~~iv~~Ll~~g-a~in~~-d  231 (477)
T PHA02878        168 GNTALHYATENKDQRLTELLLS-YGANVNIPD-------------KTNNSPLHHAVKHYNKPIVHILLENG-ASTDAR-D  231 (477)
T ss_pred             CCCHHHHHHhCCCHHHHHHHHH-CCCCCCCcC-------------CCCCCHHHHHHHhCCHHHHHHHHHcC-CCCCCC-C
Confidence            8899999999999888877776 899999884             88999999999999999999999999 999998 9


Q ss_pred             CCCChHHHHHHHc-CCCChHHHHHHHHhCCCCCcccCC-CCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccC
Q 006236           96 SDGFTALHCAVAG-GANSSFEVVKLLLSASADVNCVDV-YGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELV  173 (655)
Q Consensus        96 ~~G~TpLH~Aa~~-G~~~~~eiVklLL~~GADvn~~D~-~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g  173 (655)
                      ..|.||||+|+.. ++   .+++++|+++|+++|.++. .|.||||+|+        ++.+++++|+++|+|++..|..|
T Consensus       232 ~~g~TpLh~A~~~~~~---~~iv~~Ll~~gadvn~~~~~~g~TpLh~A~--------~~~~~v~~Ll~~gadin~~d~~g  300 (477)
T PHA02878        232 KCGNTPLHISVGYCKD---YDILKLLLEHGVDVNAKSYILGLTALHSSI--------KSERKLKLLLEYGADINSLNSYK  300 (477)
T ss_pred             CCCCCHHHHHHHhcCC---HHHHHHHHHcCCCCCccCCCCCCCHHHHHc--------cCHHHHHHHHHCCCCCCCcCCCC
Confidence            9999999999975 67   9999999999999999986 7999999994        46789999999999999999999


Q ss_pred             CCCcccccc
Q 006236          174 NIPVPQLSK  182 (655)
Q Consensus       174 ~tpl~~l~~  182 (655)
                      .||+..+..
T Consensus       301 ~TpL~~A~~  309 (477)
T PHA02878        301 LTPLSSAVK  309 (477)
T ss_pred             CCHHHHHHH
Confidence            999866543

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.78  E-value=1.1e-18  Score=195.17  Aligned_cols=142  Identities=23%  Similarity=0.307  Sum_probs=123.7

Q ss_pred             CCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHH-----------------
Q 006236           15 NKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVA-----------------   77 (655)
Q Consensus        15 ~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~e-----------------   77 (655)
                      .+++|||.||..|+.+.++.||. .|+++|..+             ..|+||||+||..|+.+                 
T Consensus        36 ~~~tPLh~A~~~g~~e~vk~Ll~-~gadvn~~d-------------~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~  101 (477)
T PHA02878         36 IPFIPLHQAVEARNLDVVKSLLT-RGHNVNQPD-------------HRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYT  101 (477)
T ss_pred             cCcchHHHHHHcCCHHHHHHHHH-CCCCCCCCC-------------CCCCCHHHHHHHCccHhHHHHHHHHHhccccccc
Confidence            47899999999999999988886 899999884             88999999998765432                 


Q ss_pred             -----------------------------------------------HHHHHHHcCCCccccccCCC-CChHHHHHHHcC
Q 006236           78 -----------------------------------------------VLKYVIETGKVNVNRACGSD-GFTALHCAVAGG  109 (655)
Q Consensus        78 -----------------------------------------------vvk~LL~~G~aDvN~~~d~~-G~TpLH~Aa~~G  109 (655)
                                                                     ++++|+++| +|+|.. +.. |.||||+|+..|
T Consensus       102 ~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~g-adin~~-~~~~g~tpLh~A~~~~  179 (477)
T PHA02878        102 LVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYG-ADINMK-DRHKGNTALHYATENK  179 (477)
T ss_pred             hhhHHHHHHcCCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcC-CCCCcc-CCCCCCCHHHHHHhCC
Confidence                                                           666777777 888888 666 999999999999


Q ss_pred             CCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccCCCCccccc
Q 006236          110 ANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLS  181 (655)
Q Consensus       110 ~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~tpl~~l~  181 (655)
                      +   .+++++|+++|++++..|..|.||||+|+.      .++.+++++|+++|++++.+|..|.+|+..+.
T Consensus       180 ~---~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~------~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~  242 (477)
T PHA02878        180 D---QRLTELLLSYGANVNIPDKTNNSPLHHAVK------HYNKPIVHILLENGASTDARDKCGNTPLHISV  242 (477)
T ss_pred             C---HHHHHHHHHCCCCCCCcCCCCCCHHHHHHH------hCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence            9   999999999999999999999999999987      88899999999999999999999999886543

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.77  E-value=2.9e-18  Score=187.94  Aligned_cols=149  Identities=19%  Similarity=0.209  Sum_probs=93.3

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCC------ccccccc---------------CCccCCCCCChHHHHHHH
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPS------FWYGRRI---------------GSKKMGFEERTPIMIAAM   72 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~d------lw~g~~~---------------~~~~~d~~G~TPLh~AA~   72 (655)
                      ..|.|+||.|+..++.+.++.++. .|++++..+      +.+....               .....+.+|.||||+|+.
T Consensus        33 ~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~  111 (413)
T PHA02875         33 YDGISPIKLAMKFRDSEAIKLLMK-HGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATI  111 (413)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHh-CCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHH
Confidence            368899998988888887766665 888877653      0000000               001123456666666666


Q ss_pred             cCCHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcCh
Q 006236           73 FGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSR  152 (655)
Q Consensus        73 ~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~  152 (655)
                      .|+.+++++|++.| +|++.. +..|.||||+|+..|+   .+++++|+++|++++.+|..|.||||+|+.      .++
T Consensus       112 ~~~~~iv~~Ll~~g-ad~~~~-~~~g~tpLh~A~~~~~---~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~------~g~  180 (413)
T PHA02875        112 LKKLDIMKLLIARG-ADPDIP-NTDKFSPLHLAVMMGD---IKGIELLIDHKACLDIEDCCGCTPLIIAMA------KGD  180 (413)
T ss_pred             hCCHHHHHHHHhCC-CCCCCC-CCCCCCHHHHHHHcCC---HHHHHHHHhcCCCCCCCCCCCCCHHHHHHH------cCC
Confidence            66666666666666 666665 6666666666666666   666666666666666666666666666665      566


Q ss_pred             HHHHHHHHhCCCCCCcccccCC
Q 006236          153 KRAIELLLKGDHTIFEEEELVN  174 (655)
Q Consensus       153 ~eivelLL~~GAdin~~d~~g~  174 (655)
                      .+++++|+++|++++..+..|.
T Consensus       181 ~eiv~~Ll~~ga~~n~~~~~~~  202 (413)
T PHA02875        181 IAICKMLLDSGANIDYFGKNGC  202 (413)
T ss_pred             HHHHHHHHhCCCCCCcCCCCCC
Confidence            6666666666666666555554

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.76  E-value=3.5e-18  Score=188.98  Aligned_cols=145  Identities=21%  Similarity=0.233  Sum_probs=113.3

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA   93 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~   93 (655)
                      ..|.|+||.|+..|+.+.++.++. .|+++|..+             ..|.||||+|+..|+.+++++|++.| ++++..
T Consensus       122 ~~g~T~Lh~A~~~~~~~~v~~Ll~-~gad~n~~d-------------~~g~tpLh~A~~~~~~~iv~~Ll~~g-~~~n~~  186 (434)
T PHA02874        122 AELKTFLHYAIKKGDLESIKMLFE-YGADVNIED-------------DNGCYPIHIAIKHNFFDIIKLLLEKG-AYANVK  186 (434)
T ss_pred             CCCccHHHHHHHCCCHHHHHHHHh-CCCCCCCcC-------------CCCCCHHHHHHHCCcHHHHHHHHHCC-CCCCCC
Confidence            467899999999999988776665 899999874             77888888888888888888888888 888887


Q ss_pred             cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCC-------------------------------CCCCccchhh
Q 006236           94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDV-------------------------------YGNKPVDLIP  142 (655)
Q Consensus        94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~-------------------------------~G~TPLhlAa  142 (655)
                       +..|.||||+|+..|+   .+++++|++.|++++.++.                               +|+||||+|+
T Consensus       187 -~~~g~tpL~~A~~~g~---~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~~~i~~Ll~~~~in~~d~~G~TpLh~A~  262 (434)
T PHA02874        187 -DNNGESPLHNAAEYGD---YACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRSAIELLINNASINDQDIDGSTPLHHAI  262 (434)
T ss_pred             -CCCCCCHHHHHHHcCC---HHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCChHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence             8888888888888888   8888888888766555544                               4555555554


Q ss_pred             hccCCCCcChHHHHHHHHhCCCCCCcccccCCCCcccccc
Q 006236          143 VAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLSK  182 (655)
Q Consensus       143 ~~~~~~~~g~~eivelLL~~GAdin~~d~~g~tpl~~l~~  182 (655)
                      .     ..++.+++++|+++|++++.+|..|.+|+..+.+
T Consensus       263 ~-----~~~~~~iv~~Ll~~gad~n~~d~~g~TpL~~A~~  297 (434)
T PHA02874        263 N-----PPCDIDIIDILLYHKADISIKDNKGENPIDTAFK  297 (434)
T ss_pred             h-----cCCcHHHHHHHHHCcCCCCCCCCCCCCHHHHHHH
Confidence            3     1236788888888888888888888888755543

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.76  E-value=4.6e-18  Score=186.32  Aligned_cols=139  Identities=17%  Similarity=0.192  Sum_probs=94.9

Q ss_pred             chHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccCC
Q 006236           17 SSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGS   96 (655)
Q Consensus        17 ~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~   96 (655)
                      .+.|+.|+..|+.+.++.+|. .|+++|..+             .+|.||||+|+..|+.+++++|+++| ++++.. +.
T Consensus         3 ~~~L~~A~~~g~~~iv~~Ll~-~g~~~n~~~-------------~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~-~~   66 (413)
T PHA02875          3 QVALCDAILFGELDIARRLLD-IGINPNFEI-------------YDGISPIKLAMKFRDSEAIKLLMKHG-AIPDVK-YP   66 (413)
T ss_pred             chHHHHHHHhCCHHHHHHHHH-CCCCCCccC-------------CCCCCHHHHHHHcCCHHHHHHHHhCC-CCcccc-CC
Confidence            578999999999999888876 899999874             67788888888888888888888877 777665 55


Q ss_pred             CCChHHHHHHHcCCCChHHHHHHHHhCCCCCc-ccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccCCC
Q 006236           97 DGFTALHCAVAGGANSSFEVVKLLLSASADVN-CVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNI  175 (655)
Q Consensus        97 ~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn-~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~t  175 (655)
                      ++.||||+|+..|+   .++|++|++.|++++ ..+.+|.||||+|+.      .++.+++++|+++|++++..+..|.+
T Consensus        67 ~~~t~L~~A~~~g~---~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~------~~~~~iv~~Ll~~gad~~~~~~~g~t  137 (413)
T PHA02875         67 DIESELHDAVEEGD---VKAVEELLDLGKFADDVFYKDGMTPLHLATI------LKKLDIMKLLIARGADPDIPNTDKFS  137 (413)
T ss_pred             CcccHHHHHHHCCC---HHHHHHHHHcCCcccccccCCCCCHHHHHHH------hCCHHHHHHHHhCCCCCCCCCCCCCC
Confidence            56666666666665   666666666555442 334455666666654      55566666666666666665555555


Q ss_pred             Ccccc
Q 006236          176 PVPQL  180 (655)
Q Consensus       176 pl~~l  180 (655)
                      |+..+
T Consensus       138 pLh~A  142 (413)
T PHA02875        138 PLHLA  142 (413)
T ss_pred             HHHHH
Confidence            55433

>PHA02946 ankyin-like protein; Provisional

Probab=99.75  E-value=6.5e-18  Score=188.09  Aligned_cols=140  Identities=16%  Similarity=0.210  Sum_probs=105.5

Q ss_pred             chHHHHHHH-hCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccC
Q 006236           17 SSILLELSA-SDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACG   95 (655)
Q Consensus        17 ~s~LL~AAa-~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d   95 (655)
                      .+.||.++. .+....++++|++.|+++|.++             .+|+||||+||..|+.+++++||++| +|+|.+ |
T Consensus        38 ~~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~d-------------~~G~TpLh~Aa~~g~~eiv~lLL~~G-Adin~~-d  102 (446)
T PHA02946         38 YHILHAYCGIKGLDERFVEELLHRGYSPNETD-------------DDGNYPLHIASKINNNRIVAMLLTHG-ADPNAC-D  102 (446)
T ss_pred             ChHHHHHHHhcCCCHHHHHHHHHCcCCCCccC-------------CCCCCHHHHHHHcCCHHHHHHHHHCc-CCCCCC-C
Confidence            455554443 3334455555556888888874             78888888888888888888888888 888887 8


Q ss_pred             CCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcc-cCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccCC
Q 006236           96 SDGFTALHCAVAGGANSSFEVVKLLLSASADVNC-VDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVN  174 (655)
Q Consensus        96 ~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~-~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~  174 (655)
                      ..|.||||+|+..+. ...+++++|+++|+++|. .|.+|.||||.|.       .++.+++++|++.|++++.+|..|.
T Consensus       103 ~~g~TpLh~A~~~~~-~~~e~v~lLl~~Gadin~~~d~~g~tpL~aa~-------~~~~~vv~~Ll~~gad~~~~d~~G~  174 (446)
T PHA02946        103 KQHKTPLYYLSGTDD-EVIERINLLVQYGAKINNSVDEEGCGPLLACT-------DPSERVFKKIMSIGFEARIVDKFGK  174 (446)
T ss_pred             CCCCCHHHHHHHcCC-chHHHHHHHHHcCCCcccccCCCCCcHHHHHH-------CCChHHHHHHHhccccccccCCCCC
Confidence            888888888876542 236788888888888884 5788888887443       5777888888888888888888888


Q ss_pred             CCccc
Q 006236          175 IPVPQ  179 (655)
Q Consensus       175 tpl~~  179 (655)
                      +++..
T Consensus       175 t~Lh~  179 (446)
T PHA02946        175 NHIHR  179 (446)
T ss_pred             CHHHH
Confidence            88743

>PHA02741 hypothetical protein; Provisional

Probab=99.75  E-value=8.2e-18  Score=163.15  Aligned_cols=130  Identities=17%  Similarity=0.158  Sum_probs=115.8

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHH-----hcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCC----HHHHHHHHH
Q 006236           14 YNKSSILLELSASDDISAFKREIE-----EKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGS----VAVLKYVIE   84 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~-----~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~----~evvk~LL~   84 (655)
                      ..|.++||.||..|+.+.++.++.     ..|++++.+             |..|.||||+|+..|+    .+++++|++
T Consensus        19 ~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~-------------d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~   85 (169)
T PHA02741         19 SEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNAT-------------DDAGQMCIHIAAEKHEAQLAAEIIDHLIE   85 (169)
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhcc-------------CCCCCcHHHHHHHcCChHHHHHHHHHHHH
Confidence            568999999999999999988764     236778777             4889999999999998    589999999


Q ss_pred             cCCCccccccC-CCCChHHHHHHHcCCCChHHHHHHHHh-CCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhC
Q 006236           85 TGKVNVNRACG-SDGFTALHCAVAGGANSSFEVVKLLLS-ASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKG  162 (655)
Q Consensus        85 ~G~aDvN~~~d-~~G~TpLH~Aa~~G~~~~~eiVklLL~-~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~  162 (655)
                      .| +++|.+ + ..|.||||+|+..++   .+++++|++ .|++++..|.+|.||||+|+.      .++.+++++|+++
T Consensus        86 ~g-adin~~-~~~~g~TpLh~A~~~~~---~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~------~~~~~iv~~L~~~  154 (169)
T PHA02741         86 LG-ADINAQ-EMLEGDTALHLAAHRRD---HDLAEWLCCQPGIDLHFCNADNKSPFELAID------NEDVAMMQILREI  154 (169)
T ss_pred             cC-CCCCCC-CcCCCCCHHHHHHHcCC---HHHHHHHHhCCCCCCCcCCCCCCCHHHHHHH------CCCHHHHHHHHHH
Confidence            99 999998 6 489999999999999   999999998 599999999999999999987      8899999999998


Q ss_pred             CCCCC
Q 006236          163 DHTIF  167 (655)
Q Consensus       163 GAdin  167 (655)
                      ++...
T Consensus       155 ~~~~~  159 (169)
T PHA02741        155 VATSR  159 (169)
T ss_pred             HHHhc
Confidence            76543

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.75  E-value=9.8e-18  Score=185.40  Aligned_cols=145  Identities=24%  Similarity=0.335  Sum_probs=114.7

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcC-------
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETG-------   86 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G-------   86 (655)
                      .++.|+||.|+..|+.+.++.+|. .|+++|..+             ..|.||||+|+..|+.+++++|+++|       
T Consensus        33 ~~~~tpL~~A~~~g~~~iv~~Ll~-~Ga~~n~~~-------------~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~   98 (434)
T PHA02874         33 DETTTPLIDAIRSGDAKIVELFIK-HGADINHIN-------------TKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILP   98 (434)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCCC-------------CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcch
Confidence            357899999999999998887775 999999874             67788888888888888888877765       


Q ss_pred             ---------------CCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcC
Q 006236           87 ---------------KVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHS  151 (655)
Q Consensus        87 ---------------~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g  151 (655)
                                     .+|++.. +..|.||||+|+..|+   .++|++|++.|++++.+|..|.||||+|+.      .+
T Consensus        99 ~~~~~~~~i~~ll~~g~d~n~~-~~~g~T~Lh~A~~~~~---~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~------~~  168 (434)
T PHA02874         99 IPCIEKDMIKTILDCGIDVNIK-DAELKTFLHYAIKKGD---LESIKMLFEYGADVNIEDDNGCYPIHIAIK------HN  168 (434)
T ss_pred             hccCCHHHHHHHHHCcCCCCCC-CCCCccHHHHHHHCCC---HHHHHHHHhCCCCCCCcCCCCCCHHHHHHH------CC
Confidence                           0344555 6778888888888888   888888888888888888888888888876      77


Q ss_pred             hHHHHHHHHhCCCCCCcccccCCCCcccccc
Q 006236          152 RKRAIELLLKGDHTIFEEEELVNIPVPQLSK  182 (655)
Q Consensus       152 ~~eivelLL~~GAdin~~d~~g~tpl~~l~~  182 (655)
                      +.+++++|+++|++++..+..|.+|+..+..
T Consensus       169 ~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~  199 (434)
T PHA02874        169 FFDIIKLLLEKGAYANVKDNNGESPLHNAAE  199 (434)
T ss_pred             cHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence            7888888888888888888888887755443

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.74  E-value=1e-17  Score=194.76  Aligned_cols=147  Identities=22%  Similarity=0.223  Sum_probs=119.8

Q ss_pred             cCCchHHHHHHHhCCH-HHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHH----------------------
Q 006236           14 YNKSSILLELSASDDI-SAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIA----------------------   70 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~-~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~A----------------------   70 (655)
                      ..|.||||.|+..|+. ..++++|+++|+++|.+             |..|.||||+|                      
T Consensus       210 ~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~k-------------D~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n  276 (764)
T PHA02716        210 NHLITPLHTYLITGNVCASVIKKIIELGGDMDMK-------------CVNGMSPIMTYIINIDNINPEITNIYIESLDGN  276 (764)
T ss_pred             CCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCC-------------CCCCCCHHHHHHHhhhccCHHHHHHHHHhcccc
Confidence            3567777777777753 34455555578887776             48899999975                      


Q ss_pred             ---------------HHcCCHHHHHHHHHcCCCccccccCCCCChHHHHHHH--cCCCChHHHHHHHHhCCCCCcccCCC
Q 006236           71 ---------------AMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVA--GGANSSFEVVKLLLSASADVNCVDVY  133 (655)
Q Consensus        71 ---------------A~~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~--~G~~~~~eiVklLL~~GADvn~~D~~  133 (655)
                                     +..|+.+++++||+.| +++|.+ |..|+||||+|+.  .++   .+++++|++.|+++|.+|..
T Consensus       277 ~~~~~~~~L~~~i~AA~~g~leiVklLLe~G-AdIN~k-D~~G~TPLH~Aaa~~~~~---~eIVklLLe~GADIN~kD~~  351 (764)
T PHA02716        277 KVKNIPMILHSYITLARNIDISVVYSFLQPG-VKLHYK-DSAGRTCLHQYILRHNIS---TDIIKLLHEYGNDLNEPDNI  351 (764)
T ss_pred             ccccchhhhHHHHHHHHcCCHHHHHHHHhCC-Cceecc-CCCCCCHHHHHHHHhCCC---chHHHHHHHcCCCCccCCCC
Confidence                           4558889999999999 999998 9999999999865  456   89999999999999999999


Q ss_pred             CCCccchhhhcc--------CCCCcChHHHHHHHHhCCCCCCcccccCCCCcc
Q 006236          134 GNKPVDLIPVAM--------KSPLHSRKRAIELLLKGDHTIFEEEELVNIPVP  178 (655)
Q Consensus       134 G~TPLhlAa~~~--------~~~~~g~~eivelLL~~GAdin~~d~~g~tpl~  178 (655)
                      |+||||+|+...        .....++.+++++|+++|++++.+|..|.+|+.
T Consensus       352 G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh  404 (764)
T PHA02716        352 GNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLT  404 (764)
T ss_pred             CCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCChHH
Confidence            999999986410        001246899999999999999999999999986

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.74  E-value=6.2e-18  Score=190.51  Aligned_cols=145  Identities=19%  Similarity=0.235  Sum_probs=132.4

Q ss_pred             ccccCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHH-cCCCc
Q 006236           11 GALYNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIE-TGKVN   89 (655)
Q Consensus        11 ~l~~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~-~G~aD   89 (655)
                      ..+++|+|+||+||..|+.+.+..+|. .|++|+.++             .++.||||.||.+|++++|+.||+ .+...
T Consensus       268 ~~d~dg~tpLH~a~r~G~~~svd~Ll~-~Ga~I~~kn-------------~d~~spLH~AA~yg~~ntv~rLL~~~~~rl  333 (929)
T KOG0510|consen  268 DEDNDGCTPLHYAARQGGPESVDNLLG-FGASINSKN-------------KDEESPLHFAAIYGRINTVERLLQESDTRL  333 (929)
T ss_pred             cccccCCchHHHHHHcCChhHHHHHHH-cCCcccccC-------------CCCCCchHHHHHcccHHHHHHHHhCcCccc
Confidence            345789999999999999999887776 999999985             899999999999999999999999 66567


Q ss_pred             cccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCc---ccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCC
Q 006236           90 VNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVN---CVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTI  166 (655)
Q Consensus        90 vN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn---~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdi  166 (655)
                      +|.. |..|.||||.|+..|+   ..++++||..||+.+   ..|.+|+||||+|+.      .|+..+|++|+.+||+|
T Consensus       334 lne~-D~~g~tpLHlaa~~gH---~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~------~g~~~av~~Li~~Ga~I  403 (929)
T KOG0510|consen  334 LNES-DLHGMTPLHLAAKSGH---DRVVQLLLNKGALFLNMSEADSDGNTALHLAAK------YGNTSAVQKLISHGADI  403 (929)
T ss_pred             cccc-cccCCCchhhhhhcCH---HHHHHHHHhcChhhhcccccccCCchhhhHHHH------hccHHHHHHHHHcCCce
Confidence            7877 9999999999999999   999999999999987   569999999999997      99999999999999999


Q ss_pred             CcccccCCCCccc
Q 006236          167 FEEEELVNIPVPQ  179 (655)
Q Consensus       167 n~~d~~g~tpl~~  179 (655)
                      ..+++.|.+.+..
T Consensus       404 ~~~n~~g~SA~~~  416 (929)
T KOG0510|consen  404 GVKNKKGKSAFDT  416 (929)
T ss_pred             eeccccccccccc
Confidence            9999888887653

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.74  E-value=1.1e-17  Score=195.20  Aligned_cols=159  Identities=19%  Similarity=0.219  Sum_probs=109.8

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCC------cccc---------------cccCCccCCCCCChHHHHHHH
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPS------FWYG---------------RRIGSKKMGFEERTPIMIAAM   72 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~d------lw~g---------------~~~~~~~~d~~G~TPLh~AA~   72 (655)
                      ..|.|+||.|+..|....+.++|...|+++|..+      +++.               ...+.+..|..|+||||+|+.
T Consensus       305 ~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~  384 (682)
T PHA02876        305 IKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAV  384 (682)
T ss_pred             CCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHH
Confidence            3466666666666633333344444666666554      1110               111223335778888888888


Q ss_pred             cCCHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcCh
Q 006236           73 FGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSR  152 (655)
Q Consensus        73 ~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~  152 (655)
                      .|+.+++++|+++| ++++.. +..|.||||+|+..++  ...++++|++.|+++|.+|.+|+||||+|+.     ...+
T Consensus       385 ~~~~~iv~~Ll~~g-ad~~~~-~~~g~T~Lh~A~~~~~--~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~-----~~~~  455 (682)
T PHA02876        385 RNNVVIINTLLDYG-ADIEAL-SQKIGTALHFALCGTN--PYMSVKTLIDRGANVNSKNKDLSTPLHYACK-----KNCK  455 (682)
T ss_pred             cCCHHHHHHHHHCC-CCcccc-CCCCCchHHHHHHcCC--HHHHHHHHHhCCCCCCcCCCCCChHHHHHHH-----hCCc
Confidence            88888888888888 888877 7788888888877655  2567888888888888888888888888875     1235


Q ss_pred             HHHHHHHHhCCCCCCcccccCCCCccccc
Q 006236          153 KRAIELLLKGDHTIFEEEELVNIPVPQLS  181 (655)
Q Consensus       153 ~eivelLL~~GAdin~~d~~g~tpl~~l~  181 (655)
                      .+++++|+++|++++..|..|.+|+..+.
T Consensus       456 ~~iv~lLl~~Gad~n~~d~~g~tpl~~a~  484 (682)
T PHA02876        456 LDVIEMLLDNGADVNAINIQNQYPLLIAL  484 (682)
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence            78888888888888888888888875443

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.74  E-value=3.1e-18  Score=183.22  Aligned_cols=154  Identities=24%  Similarity=0.320  Sum_probs=129.9

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA   93 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~   93 (655)
                      +.|..+|--|++.|.++.|+.+| ++|++||...             ....|||--||..|++++||||+++| +|++..
T Consensus        82 IegappLWaAsaAGHl~vVk~L~-~~ga~VN~tT-------------~TNStPLraACfDG~leivKyLvE~g-ad~~Ia  146 (615)
T KOG0508|consen   82 IEGAPPLWAASAAGHLEVVKLLL-RRGASVNDTT-------------RTNSTPLRAACFDGHLEIVKYLVEHG-ADPEIA  146 (615)
T ss_pred             cCCCchhhHHhccCcHHHHHHHH-HhcCcccccc-------------ccCCccHHHHHhcchhHHHHHHHHcC-CCCccc
Confidence            56666766666666666655555 5899999874             55669999999999999999999999 999999


Q ss_pred             cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccC
Q 006236           94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELV  173 (655)
Q Consensus        94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g  173 (655)
                       |..|.|.||+|++.|+   .+|+++|++.|||+|.++..|+|+||.++.      .|+.+|+++||.+|+.+++ |..|
T Consensus       147 -nrhGhTcLmIa~ykGh---~~I~qyLle~gADvn~ks~kGNTALH~caE------sG~vdivq~Ll~~ga~i~~-d~~G  215 (615)
T KOG0508|consen  147 -NRHGHTCLMIACYKGH---VDIAQYLLEQGADVNAKSYKGNTALHDCAE------SGSVDIVQLLLKHGAKIDV-DGHG  215 (615)
T ss_pred             -ccCCCeeEEeeeccCc---hHHHHHHHHhCCCcchhcccCchHHHhhhh------cccHHHHHHHHhCCceeee-cCCC
Confidence             9999999999999999   999999999999999999999999999986      8999999999999999986 5669


Q ss_pred             CCCcccccccC-ccccccccc
Q 006236          174 NIPVPQLSKDG-TEKKEYPID  193 (655)
Q Consensus       174 ~tpl~~l~~~~-~~~keypvd  193 (655)
                      .+|+-.++..+ ....++.++
T Consensus       216 mtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  216 MTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             CchHHHHhhhcchHHHHHHhc
Confidence            99985544332 344455553

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.73  E-value=2e-17  Score=196.92  Aligned_cols=140  Identities=20%  Similarity=0.260  Sum_probs=116.2

Q ss_pred             CchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccC
Q 006236           16 KSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACG   95 (655)
Q Consensus        16 g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d   95 (655)
                      ..++|++||..|+.+.++.+|. .|+|+|..|             .+|+||||+||..|+.+++++|+++| +|+|.+ |
T Consensus       525 ~~~~L~~Aa~~g~~~~l~~Ll~-~G~d~n~~d-------------~~G~TpLh~Aa~~g~~~~v~~Ll~~g-adin~~-d  588 (823)
T PLN03192        525 MASNLLTVASTGNAALLEELLK-AKLDPDIGD-------------SKGRTPLHIAASKGYEDCVLVLLKHA-CNVHIR-D  588 (823)
T ss_pred             chhHHHHHHHcCCHHHHHHHHH-CCCCCCCCC-------------CCCCCHHHHHHHcChHHHHHHHHhcC-CCCCCc-C
Confidence            3688999999999888877775 899999884             89999999999999999999999999 999998 9


Q ss_pred             CCCChHHHHHHHcCCC----------------------------ChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCC
Q 006236           96 SDGFTALHCAVAGGAN----------------------------SSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKS  147 (655)
Q Consensus        96 ~~G~TpLH~Aa~~G~~----------------------------~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~  147 (655)
                      .+|+||||+|+..|+.                            +..+++++|+++|+|+|.+|.+|+||||+|+.    
T Consensus       589 ~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~----  664 (823)
T PLN03192        589 ANGNTALWNAISAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMA----  664 (823)
T ss_pred             CCCCCHHHHHHHhCCHHHHHHHHhcCcccCcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH----
Confidence            9999999977766661                            01556677778888888888888888888876    


Q ss_pred             CCcChHHHHHHHHhCCCCCCcccccC-CCCc
Q 006236          148 PLHSRKRAIELLLKGDHTIFEEEELV-NIPV  177 (655)
Q Consensus       148 ~~~g~~eivelLL~~GAdin~~d~~g-~tpl  177 (655)
                        .++.+++++|+++|++++..|.++ .++.
T Consensus       665 --~g~~~iv~~Ll~~GAdv~~~~~~g~~t~~  693 (823)
T PLN03192        665 --EDHVDMVRLLIMNGADVDKANTDDDFSPT  693 (823)
T ss_pred             --CCcHHHHHHHHHcCCCCCCCCCCCCCCHH
Confidence              788888888888888888777666 4443

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.73  E-value=1.6e-17  Score=193.00  Aligned_cols=143  Identities=17%  Similarity=0.205  Sum_probs=120.8

Q ss_pred             cCCchHHHHHHHh--CCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCC--HHHHHHHHHcCCCc
Q 006236           14 YNKSSILLELSAS--DDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGS--VAVLKYVIETGKVN   89 (655)
Q Consensus        14 ~~g~s~LL~AAa~--gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~--~evvk~LL~~G~aD   89 (655)
                      ..|.|+||.|+..  ++.+.+ ++|.++|+++|..+             .+|.||||+|+..|+  .++|++||++| +|
T Consensus       175 ~~G~TpLH~A~~n~~~~~eIV-klLLe~GADVN~kD-------------~~G~TPLH~Aa~~g~~~~eIVklLLe~G-AD  239 (764)
T PHA02716        175 KTGYGILHAYLGNMYVDIDIL-EWLCNNGVNVNLQN-------------NHLITPLHTYLITGNVCASVIKKIIELG-GD  239 (764)
T ss_pred             CCCCcHHHHHHHhccCCHHHH-HHHHHcCCCCCCCC-------------CCCCCHHHHHHHcCCCCHHHHHHHHHcC-CC
Confidence            4578899876543  345554 55556999999985             899999999999995  58999999999 99


Q ss_pred             cccccCCCCChHHHHHH-------------------------------------HcCCCChHHHHHHHHhCCCCCcccCC
Q 006236           90 VNRACGSDGFTALHCAV-------------------------------------AGGANSSFEVVKLLLSASADVNCVDV  132 (655)
Q Consensus        90 vN~~~d~~G~TpLH~Aa-------------------------------------~~G~~~~~eiVklLL~~GADvn~~D~  132 (655)
                      +|.+ +..|.||||+|+                                     ..|+   .+++++|++.|+++|.+|.
T Consensus       240 VN~k-D~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~---leiVklLLe~GAdIN~kD~  315 (764)
T PHA02716        240 MDMK-CVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNID---ISVVYSFLQPGVKLHYKDS  315 (764)
T ss_pred             CCCC-CCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCC---HHHHHHHHhCCCceeccCC
Confidence            9999 899999999864                                     3345   8899999999999999999


Q ss_pred             CCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccCCCCccc
Q 006236          133 YGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQ  179 (655)
Q Consensus       133 ~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~tpl~~  179 (655)
                      +|+||||+|+.    ...++.+++++|+++|++++.+|..|.+|+..
T Consensus       316 ~G~TPLH~Aaa----~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~  358 (764)
T PHA02716        316 AGRTCLHQYIL----RHNISTDIIKLLHEYGNDLNEPDNIGNTVLHT  358 (764)
T ss_pred             CCCCHHHHHHH----HhCCCchHHHHHHHcCCCCccCCCCCCCHHHH
Confidence            99999999764    12467899999999999999999999999864

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.73  E-value=9.3e-18  Score=159.71  Aligned_cols=135  Identities=16%  Similarity=0.130  Sum_probs=108.8

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCH---HHHHHHHHcCCCcc
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSV---AVLKYVIETGKVNV   90 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~---evvk~LL~~G~aDv   90 (655)
                      .+|.|+||+|+..|+...+..   ..+..++...      ......|.+|.||||+|+..|+.   +++++|++.| +|+
T Consensus        15 ~~g~tpLh~A~~~g~~~~l~~---~~~~~~~~~~------~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~g-adi   84 (154)
T PHA02736         15 IEGENILHYLCRNGGVTDLLA---FKNAISDENR------YLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWG-ADI   84 (154)
T ss_pred             CCCCCHHHHHHHhCCHHHHHH---HHHHhcchhH------HHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcC-CCc
Confidence            568999999999998543322   2222222100      00011258899999999999987   4689999999 999


Q ss_pred             ccccC-CCCChHHHHHHHcCCCChHHHHHHHHh-CCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCc
Q 006236           91 NRACG-SDGFTALHCAVAGGANSSFEVVKLLLS-ASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFE  168 (655)
Q Consensus        91 N~~~d-~~G~TpLH~Aa~~G~~~~~eiVklLL~-~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~  168 (655)
                      |.+ + ..|.||||+|+..|+   .+++++|+. .|++++.+|..|.||||+|+.      .++.+++++|+.+|+++++
T Consensus        85 n~~-~~~~g~T~Lh~A~~~~~---~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~------~~~~~i~~~Ll~~ga~~~~  154 (154)
T PHA02736         85 NGK-ERVFGNTPLHIAVYTQN---YELATWLCNQPGVNMEILNYAFKTPYYVACE------RHDAKMMNILRAKGAQCKV  154 (154)
T ss_pred             ccc-CCCCCCcHHHHHHHhCC---HHHHHHHHhCCCCCCccccCCCCCHHHHHHH------cCCHHHHHHHHHcCCCCCC
Confidence            998 6 599999999999999   999999998 499999999999999999987      8899999999999998763

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.72  E-value=2.4e-17  Score=183.70  Aligned_cols=133  Identities=26%  Similarity=0.389  Sum_probs=67.8

Q ss_pred             CchHHHH-----HHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHH--HcCCHHHHHHHHHcCCC
Q 006236           16 KSSILLE-----LSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAA--MFGSVAVLKYVIETGKV   88 (655)
Q Consensus        16 g~s~LL~-----AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA--~~G~~evvk~LL~~G~a   88 (655)
                      +.++|+.     |+..++.+.++.++ +.|++++..+             ..|.||||+|+  ..|+.+++++|++.| +
T Consensus        68 ~~t~L~~~~~~~a~~~~~~~iv~~Ll-~~ga~i~~~d-------------~~g~tpL~~A~~~~~~~~~iv~~Ll~~g-~  132 (480)
T PHA03100         68 NSTPLHYLSNIKYNLTDVKEIVKLLL-EYGANVNAPD-------------NNGITPLLYAISKKSNSYSIVEYLLDNG-A  132 (480)
T ss_pred             CcCHHHHHHHHHHHhhchHHHHHHHH-HCCCCCCCCC-------------CCCCchhhHHHhcccChHHHHHHHHHcC-C
Confidence            4455555     44444444443333 3566655542             44555555555  555555555555555 5


Q ss_pred             ccccccCCCCChHHHHHHHcC--CCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCC
Q 006236           89 NVNRACGSDGFTALHCAVAGG--ANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTI  166 (655)
Q Consensus        89 DvN~~~d~~G~TpLH~Aa~~G--~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdi  166 (655)
                      +++.. +..|.||||+|+..|  +   .+++++|+++|++++.+|..|.||||+|+.      .++.+++++|+++|+++
T Consensus       133 ~~~~~-~~~g~t~L~~A~~~~~~~---~~iv~~Ll~~g~din~~d~~g~tpL~~A~~------~~~~~iv~~Ll~~ga~~  202 (480)
T PHA03100        133 NVNIK-NSDGENLLHLYLESNKID---LKILKLLIDKGVDINAKNRYGYTPLHIAVE------KGNIDVIKFLLDNGADI  202 (480)
T ss_pred             CCCcc-CCCCCcHHHHHHHcCCCh---HHHHHHHHHCCCCcccccCCCCCHHHHHHH------hCCHHHHHHHHHcCCCc
Confidence            55554 455555555555555  4   555555555555555555555555555554      44445555555555554


Q ss_pred             CcccccC
Q 006236          167 FEEEELV  173 (655)
Q Consensus       167 n~~d~~g  173 (655)
                      +..+..+
T Consensus       203 ~~~~~~~  209 (480)
T PHA03100        203 NAGDIET  209 (480)
T ss_pred             cCCCCCC
Confidence            4444444

>PHA03095 ankyrin-like protein; Provisional

Probab=99.72  E-value=4.2e-17  Score=181.10  Aligned_cols=108  Identities=26%  Similarity=0.424  Sum_probs=53.8

Q ss_pred             CCCChHHHHHHHcC---CHHHHHHHHHcCCCccccccCCCCChHHHHHHHcC-CCChHHHHHHHHhCCCCCcccCCCCCC
Q 006236           61 FEERTPIMIAAMFG---SVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGG-ANSSFEVVKLLLSASADVNCVDVYGNK  136 (655)
Q Consensus        61 ~~G~TPLh~AA~~G---~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G-~~~~~eiVklLL~~GADvn~~D~~G~T  136 (655)
                      ..|.||||+|+..+   +.+++++|++.| +|+|.. +..|.||||+|+..| .   .+++++|+++|+++|.+|..|.|
T Consensus        45 ~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~G-adin~~-~~~g~TpLh~A~~~~~~---~~iv~lLl~~ga~in~~~~~g~t  119 (471)
T PHA03095         45 EYGKTPLHLYLHYSSEKVKDIVRLLLEAG-ADVNAP-ERCGFTPLHLYLYNATT---LDVIKLLIKAGADVNAKDKVGRT  119 (471)
T ss_pred             CCCCCHHHHHHHhcCCChHHHHHHHHHCC-CCCCCC-CCCCCCHHHHHHHcCCc---HHHHHHHHHcCCCCCCCCCCCCC
Confidence            44555555555544   455555555555 555544 445555555555554 3   45555555555555555555555


Q ss_pred             ccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccCCCCc
Q 006236          137 PVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPV  177 (655)
Q Consensus       137 PLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~tpl  177 (655)
                      |||+|+.    ...++.+++++|+++|++++..|..|.+|+
T Consensus       120 pLh~a~~----~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL  156 (471)
T PHA03095        120 PLHVYLS----GFNINPKVIRLLLRKGADVNALDLYGMTPL  156 (471)
T ss_pred             HHHHHhh----CCcCCHHHHHHHHHcCCCCCccCCCCCCHH
Confidence            5555442    113344555555555555555555555554

>PHA02798 ankyrin-like protein; Provisional

Probab=99.72  E-value=2.9e-17  Score=184.55  Aligned_cols=116  Identities=22%  Similarity=0.298  Sum_probs=86.3

Q ss_pred             CCCCChHHHHHHHcCC---HHHHHHHHHcCCCccccccCCCCChHHHHHHHcCC-CChHHHHHHHHhCCC----------
Q 006236           60 GFEERTPIMIAAMFGS---VAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGA-NSSFEVVKLLLSASA----------  125 (655)
Q Consensus        60 d~~G~TPLh~AA~~G~---~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~-~~~~eiVklLL~~GA----------  125 (655)
                      |.+|.||||+|+..++   .+++++|++.| +|+|...+..|.||||+++..+. ....+++++|+++|+          
T Consensus       142 d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~g-adin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~  220 (489)
T PHA02798        142 DKDGFTMLQVYLQSNHHIDIEIIKLLLEKG-VDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHK  220 (489)
T ss_pred             CCCCCcHHHHHHHcCCcchHHHHHHHHHhC-CCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCcccc
Confidence            4777777777777776   77777777777 77776644567777777765431 112667777776665          


Q ss_pred             -----------------------------CCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccCCCC
Q 006236          126 -----------------------------DVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIP  176 (655)
Q Consensus       126 -----------------------------Dvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~tp  176 (655)
                                                   |+|.+|..|.||||+|+.      .++.+++++||++|||++..+..|.||
T Consensus       221 ~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~------~~~~~~v~~LL~~GAdin~~d~~G~Tp  294 (489)
T PHA02798        221 KKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVS------HNNRKIFEYLLQLGGDINIITELGNTC  294 (489)
T ss_pred             chHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHH------cCcHHHHHHHHHcCCcccccCCCCCcH
Confidence                                         444567789999999986      789999999999999999999999999


Q ss_pred             cccccc
Q 006236          177 VPQLSK  182 (655)
Q Consensus       177 l~~l~~  182 (655)
                      +..+..
T Consensus       295 L~~A~~  300 (489)
T PHA02798        295 LFTAFE  300 (489)
T ss_pred             HHHHHH
Confidence            865544

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.71  E-value=2.7e-17  Score=156.81  Aligned_cols=144  Identities=24%  Similarity=0.279  Sum_probs=124.5

Q ss_pred             CCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccc
Q 006236           15 NKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRAC   94 (655)
Q Consensus        15 ~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~   94 (655)
                      +-.-.++.||..+.+..|+++|.+..-.||.+             |.+|.||||-|+++|+.+||+.||..| |+++.+ 
T Consensus        62 dp~rl~lwaae~nrl~eV~~lL~e~an~vNtr-------------D~D~YTpLHRAaYn~h~div~~ll~~g-An~~a~-  126 (228)
T KOG0512|consen   62 DPIRLLLWAAEKNRLTEVQRLLSEKANHVNTR-------------DEDEYTPLHRAAYNGHLDIVHELLLSG-ANKEAK-  126 (228)
T ss_pred             CHHHHHHHHHhhccHHHHHHHHHhcccccccc-------------ccccccHHHHHHhcCchHHHHHHHHcc-CCcccc-
Confidence            34456788888999999999999777778988             499999999999999999999999999 999999 


Q ss_pred             CCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHh-CCCCCCcccccC
Q 006236           95 GSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLK-GDHTIFEEEELV  173 (655)
Q Consensus        95 d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~-~GAdin~~d~~g  173 (655)
                      ...||||||-||.-.+   .+++-+||.+|+|||+......||||+|+.     ..+....+++||. .+++...++..+
T Consensus       127 T~~GWTPLhSAckWnN---~~va~~LLqhgaDVnA~t~g~ltpLhlaa~-----~rn~r~t~~~Ll~dryi~pg~~nn~e  198 (228)
T KOG0512|consen  127 TNEGWTPLHSACKWNN---FEVAGRLLQHGADVNAQTKGLLTPLHLAAG-----NRNSRDTLELLLHDRYIHPGLKNNLE  198 (228)
T ss_pred             cccCccchhhhhcccc---hhHHHHHHhccCcccccccccchhhHHhhc-----ccchHHHHHHHhhccccChhhhcCcc
Confidence            8999999999999999   999999999999999999999999999986     3455667776654 678888877777


Q ss_pred             CCCccccc
Q 006236          174 NIPVPQLS  181 (655)
Q Consensus       174 ~tpl~~l~  181 (655)
                      ++++.++.
T Consensus       199 eta~~iAR  206 (228)
T KOG0512|consen  199 ETAFDIAR  206 (228)
T ss_pred             chHHHHHH
Confidence            77765443

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.71  E-value=6.3e-17  Score=182.11  Aligned_cols=147  Identities=19%  Similarity=0.285  Sum_probs=120.4

Q ss_pred             cCCchHHHHHHHhCC-HHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcC------CHHHHHHHHHcC
Q 006236           14 YNKSSILLELSASDD-ISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFG------SVAVLKYVIETG   86 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd-~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G------~~evvk~LL~~G   86 (655)
                      ..|.++|+++++.++ ...++++|.++|+|||..+              .+.||||.|+..+      +.+++++||++|
T Consensus        33 ~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~--------------~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~G   98 (494)
T PHA02989         33 YRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKG--------------YIETPLCAVLRNREITSNKIKKIVKLLLKFG   98 (494)
T ss_pred             cCCCCHHHHHHhcCCCChHHHHHHHHcCCCccCCC--------------CCCCcHHHHHhccCcchhhHHHHHHHHHHCC
Confidence            457888887776654 4556666677999999863              4689999998754      468999999999


Q ss_pred             CCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCC-cccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCC
Q 006236           87 KVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADV-NCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHT  165 (655)
Q Consensus        87 ~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADv-n~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAd  165 (655)
                       +|+|.+ +..|.||||+|+..+..+..+++++|+++|||+ +.+|..|.||||+|+.    ...++.+++++|+++|++
T Consensus        99 -adin~~-d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~----~~~~~~~iv~~Ll~~Gad  172 (494)
T PHA02989         99 -ADINLK-TFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLE----SFSVKKDVIKILLSFGVN  172 (494)
T ss_pred             -CCCCCC-CCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHH----hccCCHHHHHHHHHcCCC
Confidence             999998 899999999988764333489999999999999 8999999999999875    234688999999999999


Q ss_pred             CCc-ccccCCCCcccc
Q 006236          166 IFE-EEELVNIPVPQL  180 (655)
Q Consensus       166 in~-~d~~g~tpl~~l  180 (655)
                      ++. .+..|.+|+...
T Consensus       173 i~~~~~~~g~tpL~~a  188 (494)
T PHA02989        173 LFEKTSLYGLTPMNIY  188 (494)
T ss_pred             ccccccccCCChHHHH
Confidence            998 577888887543

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.70  E-value=4.8e-17  Score=181.24  Aligned_cols=145  Identities=20%  Similarity=0.306  Sum_probs=132.8

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHH-----HHHcCCHHHHHHHHHcCCC
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMI-----AAMFGSVAVLKYVIETGKV   88 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~-----AA~~G~~evvk~LL~~G~a   88 (655)
                      ..+.++||.|+..++.+.++.+|. .|+++|..+             ..|.||||+     |+..++.+++++|++.| +
T Consensus        33 ~~~~t~L~~A~~~~~~~ivk~Ll~-~g~~~~~~~-------------~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~g-a   97 (480)
T PHA03100         33 KKPVLPLYLAKEARNIDVVKILLD-NGADINSST-------------KNNSTPLHYLSNIKYNLTDVKEIVKLLLEYG-A   97 (480)
T ss_pred             cccchhhhhhhccCCHHHHHHHHH-cCCCCCCcc-------------ccCcCHHHHHHHHHHHhhchHHHHHHHHHCC-C
Confidence            457899999999999888887776 899999874             789999999     99999999999999999 9


Q ss_pred             ccccccCCCCChHHHHHH--HcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcC--hHHHHHHHHhCCC
Q 006236           89 NVNRACGSDGFTALHCAV--AGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHS--RKRAIELLLKGDH  164 (655)
Q Consensus        89 DvN~~~d~~G~TpLH~Aa--~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g--~~eivelLL~~GA  164 (655)
                      +++.. +..|.||||+|+  ..|+   .+++++|+++|++++..|..|.||||+|+.      .+  +.+++++|+++|+
T Consensus        98 ~i~~~-d~~g~tpL~~A~~~~~~~---~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~------~~~~~~~iv~~Ll~~g~  167 (480)
T PHA03100         98 NVNAP-DNNGITPLLYAISKKSNS---YSIVEYLLDNGANVNIKNSDGENLLHLYLE------SNKIDLKILKLLIDKGV  167 (480)
T ss_pred             CCCCC-CCCCCchhhHHHhcccCh---HHHHHHHHHcCCCCCccCCCCCcHHHHHHH------cCCChHHHHHHHHHCCC
Confidence            99988 999999999999  9898   999999999999999999999999999987      77  8999999999999


Q ss_pred             CCCcccccCCCCccccccc
Q 006236          165 TIFEEEELVNIPVPQLSKD  183 (655)
Q Consensus       165 din~~d~~g~tpl~~l~~~  183 (655)
                      +++..+..|.+|+..+...
T Consensus       168 din~~d~~g~tpL~~A~~~  186 (480)
T PHA03100        168 DINAKNRYGYTPLHIAVEK  186 (480)
T ss_pred             CcccccCCCCCHHHHHHHh
Confidence            9999999999998665443

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.70  E-value=9.5e-17  Score=169.48  Aligned_cols=128  Identities=20%  Similarity=0.181  Sum_probs=105.8

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA   93 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~   93 (655)
                      ..+.+++|++|+..+...+.++|.++|+++|..+         ...+..|.||||+|+..++.+++++|+++| +|+|..
T Consensus        30 ~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~---------~~sd~~g~TpLh~Aa~~~~~eivklLL~~G-ADVN~~   99 (300)
T PHA02884         30 KICIANILYSSIKFHYTDIIDAILKLGADPEAPF---------PLSENSKTNPLIYAIDCDNDDAAKLLIRYG-ADVNRY   99 (300)
T ss_pred             cCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccC---------cccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCcCcc
Confidence            4577888888887655555556666999999863         001368999999999999999999999999 999986


Q ss_pred             cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHH
Q 006236           94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLL  160 (655)
Q Consensus        94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL  160 (655)
                      .+..|.||||+|+..|+   .+++++|++.|++++.+|.+|.||||+|+.      .++.+++.++.
T Consensus       100 ~~~~g~TpLh~Aa~~~~---~eivklLL~~GAdin~kd~~G~TpL~~A~~------~~~~~~~~~~~  157 (300)
T PHA02884        100 AEEAKITPLYISVLHGC---LKCLEILLSYGADINIQTNDMVTPIELALM------ICNNFLAFMIC  157 (300)
T ss_pred             cCCCCCCHHHHHHHcCC---HHHHHHHHHCCCCCCCCCCCCCCHHHHHHH------hCChhHHHHhc
Confidence            35689999999999999   999999999999999999999999999986      45555554443

>PHA02946 ankyin-like protein; Provisional

Probab=99.70  E-value=9.5e-17  Score=178.78  Aligned_cols=143  Identities=15%  Similarity=0.191  Sum_probs=123.4

Q ss_pred             chHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcC--CHHHHHHHHHcCCCcccccc
Q 006236           17 SSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFG--SVAVLKYVIETGKVNVNRAC   94 (655)
Q Consensus        17 ~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G--~~evvk~LL~~G~aDvN~~~   94 (655)
                      .|+||.||..|+.+.++.||. +|+++|.++             .+|+||||+|+..+  ..+++++|+++| +++|...
T Consensus        73 ~TpLh~Aa~~g~~eiv~lLL~-~GAdin~~d-------------~~g~TpLh~A~~~~~~~~e~v~lLl~~G-adin~~~  137 (446)
T PHA02946         73 NYPLHIASKINNNRIVAMLLT-HGADPNACD-------------KQHKTPLYYLSGTDDEVIERINLLVQYG-AKINNSV  137 (446)
T ss_pred             CCHHHHHHHcCCHHHHHHHHH-CcCCCCCCC-------------CCCCCHHHHHHHcCCchHHHHHHHHHcC-CCccccc
Confidence            588999998888877766665 899999884             89999999999876  489999999999 9999644


Q ss_pred             CCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccCC
Q 006236           95 GSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVN  174 (655)
Q Consensus        95 d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~  174 (655)
                      +..|.|||| |+..|+   .+++++|++.|++++.+|..|+||||+|+.    ...+..+++++|+++|++++.+|.+|.
T Consensus       138 d~~g~tpL~-aa~~~~---~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~----~~~~~~~~v~~Ll~~Gadin~~d~~G~  209 (446)
T PHA02946        138 DEEGCGPLL-ACTDPS---ERVFKKIMSIGFEARIVDKFGKNHIHRHLM----SDNPKASTISWMMKLGISPSKPDHDGN  209 (446)
T ss_pred             CCCCCcHHH-HHHCCC---hHHHHHHHhccccccccCCCCCCHHHHHHH----hcCCCHHHHHHHHHcCCCCcccCCCCC
Confidence            889999998 556677   899999999999999999999999999875    234567899999999999999999999


Q ss_pred             CCcccccc
Q 006236          175 IPVPQLSK  182 (655)
Q Consensus       175 tpl~~l~~  182 (655)
                      ||+..+..
T Consensus       210 TpLH~Aa~  217 (446)
T PHA02946        210 TPLHIVCS  217 (446)
T ss_pred             CHHHHHHH
Confidence            99976654

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.70  E-value=8.1e-17  Score=181.23  Aligned_cols=148  Identities=18%  Similarity=0.190  Sum_probs=106.5

Q ss_pred             CCchHHHHHHHh---CCHHHHHHHHHhcCCCC-CCCCcccccccCCccCCCCCChHHHHHHHc--CCHHHHHHHHHcCCC
Q 006236           15 NKSSILLELSAS---DDISAFKREIEEKGFDV-DEPSFWYGRRIGSKKMGFEERTPIMIAAMF--GSVAVLKYVIETGKV   88 (655)
Q Consensus        15 ~g~s~LL~AAa~---gd~~~vk~LL~~~GadI-n~~dlw~g~~~~~~~~d~~G~TPLh~AA~~--G~~evvk~LL~~G~a   88 (655)
                      .|.|||+.|+..   ++.+ +.++|.++|+|+ +..             |..|+||||+|+..  ++.+++++|+++| +
T Consensus       107 ~g~tpL~~a~~~~~~~~~e-iv~~Ll~~Gadin~~~-------------d~~g~tpLh~a~~~~~~~~~iv~~Ll~~G-a  171 (494)
T PHA02989        107 NGVSPIVCFIYNSNINNCD-MLRFLLSKGINVNDVK-------------NSRGYNLLHMYLESFSVKKDVIKILLSFG-V  171 (494)
T ss_pred             CCCcHHHHHHHhcccCcHH-HHHHHHHCCCCccccc-------------CCCCCCHHHHHHHhccCCHHHHHHHHHcC-C
Confidence            456666655433   2333 333333466666 444             47888888888754  5788888888888 8


Q ss_pred             ccccccCCCCChHHHHHHHcCC-CChHHHHHHHHhCCCCCcc--------------------------------------
Q 006236           89 NVNRACGSDGFTALHCAVAGGA-NSSFEVVKLLLSASADVNC--------------------------------------  129 (655)
Q Consensus        89 DvN~~~d~~G~TpLH~Aa~~G~-~~~~eiVklLL~~GADvn~--------------------------------------  129 (655)
                      |++...+..|.||||+|+..+. ....+++++|+++|+++|.                                      
T Consensus       172 di~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~  251 (494)
T PHA02989        172 NLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINK  251 (494)
T ss_pred             CccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCC
Confidence            8887337788888888876541 1127888888888876654                                      


Q ss_pred             cCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccCCCCccccccc
Q 006236          130 VDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLSKD  183 (655)
Q Consensus       130 ~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~tpl~~l~~~  183 (655)
                      +|..|.||||+|+.      .++.+++++||++|+|++.+|..|.||+..+...
T Consensus       252 ~d~~G~TpL~~Aa~------~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~  299 (494)
T PHA02989        252 KDKKGFNPLLISAK------VDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKH  299 (494)
T ss_pred             CCCCCCCHHHHHHH------hcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHc
Confidence            45568899999886      7889999999999999999999999998655443

>PHA03095 ankyrin-like protein; Provisional

Probab=99.70  E-value=9.6e-17  Score=178.24  Aligned_cols=146  Identities=23%  Similarity=0.325  Sum_probs=126.4

Q ss_pred             cCCchHHHHHHHhC--CHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcC-CHHHHHHHHHcCCCcc
Q 006236           14 YNKSSILLELSASD--DISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFG-SVAVLKYVIETGKVNV   90 (655)
Q Consensus        14 ~~g~s~LL~AAa~g--d~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G-~~evvk~LL~~G~aDv   90 (655)
                      ..|.|+||.|+..+  +...+.++|.+.|+++|..+             ..|.||||+|+..| ..+++++|++.| +++
T Consensus        45 ~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~-------------~~g~TpLh~A~~~~~~~~iv~lLl~~g-a~i  110 (471)
T PHA03095         45 EYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPE-------------RCGFTPLHLYLYNATTLDVIKLLIKAG-ADV  110 (471)
T ss_pred             CCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCC-------------CCCCCHHHHHHHcCCcHHHHHHHHHcC-CCC
Confidence            45789999999987  45555555666999999985             79999999999999 599999999999 999


Q ss_pred             ccccCCCCChHHHHHHH--cCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCc
Q 006236           91 NRACGSDGFTALHCAVA--GGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFE  168 (655)
Q Consensus        91 N~~~d~~G~TpLH~Aa~--~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~  168 (655)
                      |.. +..|.||||+|+.  .++   .+++++|++.|++++..|..|.||||+|+.    ......+++++|+++|++++.
T Consensus       111 n~~-~~~g~tpLh~a~~~~~~~---~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~----~~~~~~~iv~~Ll~~g~~~~~  182 (471)
T PHA03095        111 NAK-DKVGRTPLHVYLSGFNIN---PKVIRLLLRKGADVNALDLYGMTPLAVLLK----SRNANVELLRLLIDAGADVYA  182 (471)
T ss_pred             CCC-CCCCCCHHHHHhhCCcCC---HHHHHHHHHcCCCCCccCCCCCCHHHHHHH----cCCCCHHHHHHHHHcCCCCcc
Confidence            998 8999999999994  456   899999999999999999999999999876    124578999999999999999


Q ss_pred             ccccCCCCccccc
Q 006236          169 EEELVNIPVPQLS  181 (655)
Q Consensus       169 ~d~~g~tpl~~l~  181 (655)
                      .|..|.++++.+.
T Consensus       183 ~d~~g~t~Lh~~~  195 (471)
T PHA03095        183 VDDRFRSLLHHHL  195 (471)
T ss_pred             cCCCCCCHHHHHH
Confidence            8889999885443

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.70  E-value=1e-16  Score=187.02  Aligned_cols=145  Identities=23%  Similarity=0.258  Sum_probs=125.3

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcC-CHHHHHHHHHcCCCcccc
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFG-SVAVLKYVIETGKVNVNR   92 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G-~~evvk~LL~~G~aDvN~   92 (655)
                      ..|.|+||+|+..++...++.+|.+.|+++|..+             ..|.||||+|+..| ..+++++|+..| +++|.
T Consensus       271 ~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d-------------~~g~TpLh~Aa~~g~~~~~v~~Ll~~g-adin~  336 (682)
T PHA02876        271 DCKNTPLHHASQAPSLSRLVPKLLERGADVNAKN-------------IKGETPLYLMAKNGYDTENIRTLIMLG-ADVNA  336 (682)
T ss_pred             CCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcC-------------CCCCCHHHHHHHhCCCHHHHHHHHHcC-CCCCC
Confidence            4588999999999998888888888999999874             78999999999998 588999999998 99998


Q ss_pred             ccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCccccc
Q 006236           93 ACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEEL  172 (655)
Q Consensus        93 ~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~  172 (655)
                      . +..|.||||+|+..+.  ..+++++|++.|+++|.+|..|.||||+|+.      .++.+++++|+++|++++..+..
T Consensus       337 ~-d~~g~TpLh~A~~~~~--~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~------~~~~~iv~~Ll~~gad~~~~~~~  407 (682)
T PHA02876        337 A-DRLYITPLHQASTLDR--NKDIVITLLELGANVNARDYCDKTPIHYAAV------RNNVVIINTLLDYGADIEALSQK  407 (682)
T ss_pred             c-ccCCCcHHHHHHHhCC--cHHHHHHHHHcCCCCccCCCCCCCHHHHHHH------cCCHHHHHHHHHCCCCccccCCC
Confidence            8 8899999999988543  2788999999999999999999999999986      88899999999999999988888


Q ss_pred             CCCCccccc
Q 006236          173 VNIPVPQLS  181 (655)
Q Consensus       173 g~tpl~~l~  181 (655)
                      |.+++..+.
T Consensus       408 g~T~Lh~A~  416 (682)
T PHA02876        408 IGTALHFAL  416 (682)
T ss_pred             CCchHHHHH
Confidence            888875543

>PHA02795 ankyrin-like protein; Provisional

Probab=99.69  E-value=8.5e-17  Score=176.59  Aligned_cols=145  Identities=12%  Similarity=0.073  Sum_probs=123.7

Q ss_pred             cCCchHHHHHHH--hCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccc
Q 006236           14 YNKSSILLELSA--SDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVN   91 (655)
Q Consensus        14 ~~g~s~LL~AAa--~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN   91 (655)
                      ..+.++||.++.  .|+.+.++.|| .+|+|||..               ++.||||+|+..++.+++++|+++| ++.+
T Consensus       114 ~~~~~~L~~~~~n~~n~~eiV~~LI-~~GADIn~~---------------~~~t~lh~A~~~~~~eIVk~Lls~G-a~~~  176 (437)
T PHA02795        114 NSVQDLLLYYLSNAYVEIDIVDFMV-DHGAVIYKI---------------ECLNAYFRGICKKESSVVEFILNCG-IPDE  176 (437)
T ss_pred             ccccHHHHHHHHhcCCCHHHHHHHH-HCCCCCCCC---------------CCCCHHHHHHHcCcHHHHHHHHhcC-Cccc
Confidence            346788888888  66666665555 599999975               3589999999999999999999999 7543


Q ss_pred             cccC-----CCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCC
Q 006236           92 RACG-----SDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTI  166 (655)
Q Consensus        92 ~~~d-----~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdi  166 (655)
                      ...+     ..+.|++|.|+..++   .+++++|+++|||+|.+|..|.||||+|+.      .++.+++++|+++|+++
T Consensus       177 n~~~~~l~~~~~~t~l~~a~~~~~---~eIve~LIs~GADIN~kD~~G~TpLh~Aa~------~g~~eiVelLL~~GAdI  247 (437)
T PHA02795        177 NDVKLDLYKIIQYTRGFLVDEPTV---LEIYKLCIPYIEDINQLDAGGRTLLYRAIY------AGYIDLVSWLLENGANV  247 (437)
T ss_pred             ccccchhhhhhccchhHHHHhcCH---HHHHHHHHhCcCCcCcCCCCCCCHHHHHHH------cCCHHHHHHHHHCCCCC
Confidence            2211     347899999999998   999999999999999999999999999997      89999999999999999


Q ss_pred             CcccccCCCCcccccccC
Q 006236          167 FEEEELVNIPVPQLSKDG  184 (655)
Q Consensus       167 n~~d~~g~tpl~~l~~~~  184 (655)
                      +.+|..|.||+..+...+
T Consensus       248 N~~d~~G~TpLh~Aa~~g  265 (437)
T PHA02795        248 NAVMSNGYTCLDVAVDRG  265 (437)
T ss_pred             CCcCCCCCCHHHHHHHcC
Confidence            999999999997665544

>PHA02798 ankyrin-like protein; Provisional

Probab=99.69  E-value=1.2e-16  Score=179.49  Aligned_cols=145  Identities=21%  Similarity=0.260  Sum_probs=119.7

Q ss_pred             cCCchHHHHHHHh-CCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHc-----CCHHHHHHHHHcCC
Q 006236           14 YNKSSILLELSAS-DDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMF-----GSVAVLKYVIETGK   87 (655)
Q Consensus        14 ~~g~s~LL~AAa~-gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~-----G~~evvk~LL~~G~   87 (655)
                      ..+.++++.+... +....++++|.++|+++|..+             .+|.||||+|+..     +..+++++|+++| 
T Consensus        34 ~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gadvn~~d-------------~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~G-   99 (489)
T PHA02798         34 VNEYSIFQKYLQRDSPSTDIVKLFINLGANVNGLD-------------NEYSTPLCTILSNIKDYKHMLDIVKILIENG-   99 (489)
T ss_pred             cccchHHHHHHhCCCCCHHHHHHHHHCCCCCCCCC-------------CCCCChHHHHHHhHHhHHhHHHHHHHHHHCC-
Confidence            3456766544443 334456666667999999984             8999999999864     6789999999999 


Q ss_pred             CccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcCh---HHHHHHHHhCCC
Q 006236           88 VNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSR---KRAIELLLKGDH  164 (655)
Q Consensus        88 aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~---~eivelLL~~GA  164 (655)
                      +|+|.. +..|.||||+|+..+..+..+++++|+++|||++.+|.+|.||||+|+.      .++   .+++++|+++|+
T Consensus       100 adiN~~-d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~------~~~~~~~~vv~~Ll~~ga  172 (489)
T PHA02798        100 ADINKK-NSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQ------SNHHIDIEIIKLLLEKGV  172 (489)
T ss_pred             CCCCCC-CCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHH------cCCcchHHHHHHHHHhCC
Confidence            999999 9999999999999875445999999999999999999999999999986      454   899999999999


Q ss_pred             CCCccc-ccCCCCccc
Q 006236          165 TIFEEE-ELVNIPVPQ  179 (655)
Q Consensus       165 din~~d-~~g~tpl~~  179 (655)
                      +++..+ ..+.+++..
T Consensus       173 din~~~~~~~~t~Lh~  188 (489)
T PHA02798        173 DINTHNNKEKYDTLHC  188 (489)
T ss_pred             CcccccCcCCCcHHHH
Confidence            999875 456666643

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.68  E-value=5.9e-17  Score=159.45  Aligned_cols=155  Identities=21%  Similarity=0.255  Sum_probs=125.6

Q ss_pred             CCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcc------------------cccccCCccCCCCCChHHHHHHHcCCH
Q 006236           15 NKSSILLELSASDDISAFKREIEEKGFDVDEPSFW------------------YGRRIGSKKMGFEERTPIMIAAMFGSV   76 (655)
Q Consensus        15 ~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw------------------~g~~~~~~~~d~~G~TPLh~AA~~G~~   76 (655)
                      +|.+.+|.++-++....+...| .+|...|+.+++                  .-.+.-.+.-|..|.|||+||+.+|++
T Consensus        95 ~g~~~~~v~ap~~s~~k~sttl-tN~~rgnevs~~p~s~~slsVhql~L~~~~~~~~n~VN~~De~GfTpLiWAaa~G~i  173 (296)
T KOG0502|consen   95 EGWSALLVAAPCGSVDKVSTTL-TNGARGNEVSLMPWSPLSLSVHQLHLDVVDLLVNNKVNACDEFGFTPLIWAAAKGHI  173 (296)
T ss_pred             hhhhhhhhcCCCCCcceeeeee-cccccCCccccccCChhhHHHHHHHHHHHHHHhhccccCccccCchHhHHHHhcCch
Confidence            4556666666666444433333 355655555411                  001122344479999999999999999


Q ss_pred             HHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHH
Q 006236           77 AVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAI  156 (655)
Q Consensus        77 evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eiv  156 (655)
                      .+|++||+.| +|++.. ++...++|.+|+.+|.   .+||++||..+.|+|.-|.+|-|||-+|++      .++.+|+
T Consensus       174 ~vV~fLL~~G-Adp~~l-gk~resALsLAt~ggy---tdiV~lLL~r~vdVNvyDwNGgTpLlyAvr------gnhvkcv  242 (296)
T KOG0502|consen  174 PVVQFLLNSG-ADPDAL-GKYRESALSLATRGGY---TDIVELLLTREVDVNVYDWNGGTPLLYAVR------GNHVKCV  242 (296)
T ss_pred             HHHHHHHHcC-CChhhh-hhhhhhhHhHHhcCCh---HHHHHHHHhcCCCcceeccCCCceeeeeec------CChHHHH
Confidence            9999999999 999998 8999999999999999   999999999999999999999999999987      8999999


Q ss_pred             HHHHhCCCCCCcccccCCCCccccc
Q 006236          157 ELLLKGDHTIFEEEELVNIPVPQLS  181 (655)
Q Consensus       157 elLL~~GAdin~~d~~g~tpl~~l~  181 (655)
                      +.||..||+++..+..|..+...+.
T Consensus       243 e~Ll~sGAd~t~e~dsGy~~mdlAV  267 (296)
T KOG0502|consen  243 ESLLNSGADVTQEDDSGYWIMDLAV  267 (296)
T ss_pred             HHHHhcCCCcccccccCCcHHHHHH
Confidence            9999999999999999988775443

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.67  E-value=1.2e-16  Score=171.23  Aligned_cols=152  Identities=18%  Similarity=0.211  Sum_probs=135.9

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA   93 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~   93 (655)
                      .+|.+||+.||.+|..+.+..+|+..++++...+   ..+.+  -...+|-+||-.|+..|++++||.|+.+| ++||..
T Consensus        40 ~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~G---sV~FD--ge~IegappLWaAsaAGHl~vVk~L~~~g-a~VN~t  113 (615)
T KOG0508|consen   40 QNGGTPLLIAARNGHADVVEYLLEHCRASPEQGG---SVRFD--GETIEGAPPLWAASAAGHLEVVKLLLRRG-ASVNDT  113 (615)
T ss_pred             cCCCCceeeehhcCcHHHHHHHHHHhcCCccCCc---eEEeC--CcccCCCchhhHHhccCcHHHHHHHHHhc-Cccccc
Confidence            4678999999999999999999998999988765   11111  12367899999999999999999999999 999988


Q ss_pred             cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccC
Q 006236           94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELV  173 (655)
Q Consensus        94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g  173 (655)
                       .....|||--||.-|+   .++||+|+++|+|+++.|..|.|.||+|+.      .|+.+|+++|++.|+|+|.++..|
T Consensus       114 -T~TNStPLraACfDG~---leivKyLvE~gad~~IanrhGhTcLmIa~y------kGh~~I~qyLle~gADvn~ks~kG  183 (615)
T KOG0508|consen  114 -TRTNSTPLRAACFDGH---LEIVKYLVEHGADPEIANRHGHTCLMIACY------KGHVDIAQYLLEQGADVNAKSYKG  183 (615)
T ss_pred             -cccCCccHHHHHhcch---hHHHHHHHHcCCCCcccccCCCeeEEeeec------cCchHHHHHHHHhCCCcchhcccC
Confidence             7788899999999999   999999999999999999999999999975      999999999999999999999999


Q ss_pred             CCCccccc
Q 006236          174 NIPVPQLS  181 (655)
Q Consensus       174 ~tpl~~l~  181 (655)
                      .|.++..+
T Consensus       184 NTALH~ca  191 (615)
T KOG0508|consen  184 NTALHDCA  191 (615)
T ss_pred             chHHHhhh
Confidence            99985444

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.67  E-value=8.2e-17  Score=168.08  Aligned_cols=145  Identities=26%  Similarity=0.293  Sum_probs=130.6

Q ss_pred             cccCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHc-----CCHHHHHHHHHcC
Q 006236           12 ALYNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMF-----GSVAVLKYVIETG   86 (655)
Q Consensus        12 l~~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~-----G~~evvk~LL~~G   86 (655)
                      .+.+|+|.||+++...|++.|..||...-.+||..+             .-|.||+|+|+..     .++.+|..|...|
T Consensus       264 aDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qN-------------rAGYtpiMLaALA~lk~~~d~~vV~~LF~mg  330 (452)
T KOG0514|consen  264 ADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQN-------------RAGYTPVMLAALAKLKQPADRTVVERLFKMG  330 (452)
T ss_pred             hcCCCCeeeeeeecccchHHHHHHhccCcccccccc-------------cccccHHHHHHHHhhcchhhHHHHHHHHhcc
Confidence            456799999999999999999999986667888885             8899999999964     4678999999998


Q ss_pred             CCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHh-CCCC
Q 006236           87 KVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLK-GDHT  165 (655)
Q Consensus        87 ~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~-~GAd  165 (655)
                        |||.+-...|.|+|++|+..|+   .++|+.||..|||||.+|.+|.|+|++|+.      .|+++|+++||. -++|
T Consensus       331 --nVNaKAsQ~gQTALMLAVSHGr---~d~vk~LLacgAdVNiQDdDGSTALMCA~E------HGhkEivklLLA~p~cd  399 (452)
T KOG0514|consen  331 --DVNAKASQHGQTALMLAVSHGR---VDMVKALLACGADVNIQDDDGSTALMCAAE------HGHKEIVKLLLAVPSCD  399 (452)
T ss_pred             --CcchhhhhhcchhhhhhhhcCc---HHHHHHHHHccCCCccccCCccHHHhhhhh------hChHHHHHHHhccCccc
Confidence              8887756899999999999999   999999999999999999999999999986      999999999997 5799


Q ss_pred             CCcccccCCCCcccc
Q 006236          166 IFEEEELVNIPVPQL  180 (655)
Q Consensus       166 in~~d~~g~tpl~~l  180 (655)
                      +.+.|.+|.|.+.++
T Consensus       400 ~sLtD~DgSTAl~IA  414 (452)
T KOG0514|consen  400 ISLTDVDGSTALSIA  414 (452)
T ss_pred             ceeecCCCchhhhhH
Confidence            999999999987544

>PHA02917 ankyrin-like protein; Provisional

Probab=99.66  E-value=3.8e-16  Score=181.33  Aligned_cols=154  Identities=14%  Similarity=0.166  Sum_probs=118.7

Q ss_pred             ccCCchHHHHHHHh---CCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChH-----------------------
Q 006236           13 LYNKSSILLELSAS---DDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTP-----------------------   66 (655)
Q Consensus        13 ~~~g~s~LL~AAa~---gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TP-----------------------   66 (655)
                      +.+|.|+||+|+..   |+.+.++.||. .|++++..+             .+|+||                       
T Consensus        29 d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~-~ga~v~~~~-------------~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~   94 (661)
T PHA02917         29 NQFKNNALHAYLFNEHCNNVEVVKLLLD-SGTNPLHKN-------------WRQLTPLEEYTNSRHVKVNKDIAMALLEA   94 (661)
T ss_pred             CCCCCcHHHHHHHhhhcCcHHHHHHHHH-CCCCccccC-------------CCCCCHHHHHHHcCChhHHHHHHHHHHhc
Confidence            35688999987444   66666666664 999999875             334444                       


Q ss_pred             ------------HHHHHHcCCHHHHHHHHHcCCCccccccCCCCChHHHHHH--HcCCCChHHHHHHHHhCCCCCcccCC
Q 006236           67 ------------IMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAV--AGGANSSFEVVKLLLSASADVNCVDV  132 (655)
Q Consensus        67 ------------Lh~AA~~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa--~~G~~~~~eiVklLL~~GADvn~~D~  132 (655)
                                  +|+|+..|+.++|++||++| +|+|.+ |..|+||||+|+  ..|+   .++|++||++||++|..|.
T Consensus        95 ~~~~n~~~~~~~~~~a~~~~~~e~vk~Ll~~G-adin~~-d~~g~T~L~~~~a~~~~~---~eivklLi~~Ga~vn~~d~  169 (661)
T PHA02917         95 TGYSNINDFNIFSYMKSKNVDVDLIKVLVEHG-FDLSVK-CENHRSVIENYVMTDDPV---PEIIDLFIENGCSVLYEDE  169 (661)
T ss_pred             cCCCCCCCcchHHHHHhhcCCHHHHHHHHHcC-CCCCcc-CCCCccHHHHHHHccCCC---HHHHHHHHHcCCCcccccc
Confidence                        44555556788999999999 999998 999999999654  4678   9999999999999987654


Q ss_pred             ---CC-----------CCccchhhhccC---C--CCcChHHHHHHHHhCCCCCCcccccCCCCcccccccCc
Q 006236          133 ---YG-----------NKPVDLIPVAMK---S--PLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLSKDGT  185 (655)
Q Consensus       133 ---~G-----------~TPLhlAa~~~~---~--~~~g~~eivelLL~~GAdin~~d~~g~tpl~~l~~~~~  185 (655)
                         .|           .||||+|+..+.   .  ...++.+++++|+++|++++.+|.+|.+|+..+...+.
T Consensus       170 ~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~  241 (661)
T PHA02917        170 DDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSH  241 (661)
T ss_pred             ccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCC
Confidence               34           599999973000   0  12458899999999999999999999999977665543

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.64  E-value=3.7e-16  Score=176.39  Aligned_cols=158  Identities=22%  Similarity=0.258  Sum_probs=133.7

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccc----cccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCc
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYG----RRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVN   89 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g----~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aD   89 (655)
                      ..+.+|||.|+..||.+.++..|. .|..+...  |.+    .+-=.+..|.+|.||||+||..|+++.+..|+..| ++
T Consensus       223 n~~~~pLhlAve~g~~e~lk~~L~-n~~~~a~~--~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~G-a~  298 (929)
T KOG0510|consen  223 NEKATPLHLAVEGGDIEMLKMCLQ-NGKKIADV--QLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFG-AS  298 (929)
T ss_pred             CCCCcchhhhhhcCCHHHHHHHHh-Cccccchh--hhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcC-Cc
Confidence            567899999999999999998886 55544332  111    11112335899999999999999999999999999 99


Q ss_pred             cccccCCCCChHHHHHHHcCCCChHHHHHHHHh-CC-CCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCC
Q 006236           90 VNRACGSDGFTALHCAVAGGANSSFEVVKLLLS-AS-ADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIF  167 (655)
Q Consensus        90 vN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~-~G-ADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin  167 (655)
                      +|.+ +.++.||||.||.+|+   .++|+.||+ .| ...|..|..|.||||+|++      .|+.+++++||+.||...
T Consensus       299 I~~k-n~d~~spLH~AA~yg~---~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~------~gH~~v~qlLl~~GA~~~  368 (929)
T KOG0510|consen  299 INSK-NKDEESPLHFAAIYGR---INTVERLLQESDTRLLNESDLHGMTPLHLAAK------SGHDRVVQLLLNKGALFL  368 (929)
T ss_pred             cccc-CCCCCCchHHHHHccc---HHHHHHHHhCcCccccccccccCCCchhhhhh------cCHHHHHHHHHhcChhhh
Confidence            9999 8999999999999999   999999998 55 6789999999999999987      999999999999999988


Q ss_pred             ---cccccCCCCcccccccCc
Q 006236          168 ---EEEELVNIPVPQLSKDGT  185 (655)
Q Consensus       168 ---~~d~~g~tpl~~l~~~~~  185 (655)
                         ..|.+|.|+++.+++.++
T Consensus       369 ~~~e~D~dg~TaLH~Aa~~g~  389 (929)
T KOG0510|consen  369 NMSEADSDGNTALHLAAKYGN  389 (929)
T ss_pred             cccccccCCchhhhHHHHhcc
Confidence               459999999987776653

>PHA02795 ankyrin-like protein; Provisional

Probab=99.64  E-value=1.1e-15  Score=167.85  Aligned_cols=143  Identities=17%  Similarity=0.123  Sum_probs=114.9

Q ss_pred             CCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccc
Q 006236           15 NKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRAC   94 (655)
Q Consensus        15 ~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~   94 (655)
                      ++.++||.|+..++.+.++.++ .+|++++...       .....+..+.|++|.|+..++.+++++|+++| +|+|.+ 
T Consensus       148 ~~~t~lh~A~~~~~~eIVk~Ll-s~Ga~~~n~~-------~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~G-ADIN~k-  217 (437)
T PHA02795        148 ECLNAYFRGICKKESSVVEFIL-NCGIPDENDV-------KLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYI-EDINQL-  217 (437)
T ss_pred             CCCCHHHHHHHcCcHHHHHHHH-hcCCcccccc-------cchhhhhhccchhHHHHhcCHHHHHHHHHhCc-CCcCcC-
Confidence            3468888887777777666655 4888543321       00001245789999999999999999999999 999999 


Q ss_pred             CCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccC--CCCcChHHHHHHHHhCCCCCCccc
Q 006236           95 GSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMK--SPLHSRKRAIELLLKGDHTIFEEE  170 (655)
Q Consensus        95 d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~--~~~~g~~eivelLL~~GAdin~~d  170 (655)
                      +..|.||||+|+..|+   .+++++|+++||++|.+|..|.||||+|+....  ....++.+++++|+++|++++..+
T Consensus       218 D~~G~TpLh~Aa~~g~---~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~~~  292 (437)
T PHA02795        218 DAGGRTLLYRAIYAGY---IDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSIDCIK  292 (437)
T ss_pred             CCCCCCHHHHHHHcCC---HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCchh
Confidence            9999999999999999   999999999999999999999999999987100  011236799999999999998644

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.63  E-value=1.2e-15  Score=131.49  Aligned_cols=89  Identities=35%  Similarity=0.546  Sum_probs=82.1

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccC
Q 006236           67 IMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMK  146 (655)
Q Consensus        67 Lh~AA~~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~  146 (655)
                      ||+||..|+++++++|++.+ .+++.     |.||||+|+..|+   .+++++|++.|++++.+|.+|+||||+|+.   
T Consensus         1 L~~A~~~~~~~~~~~ll~~~-~~~~~-----~~~~l~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~---   68 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKG-ADINL-----GNTALHYAAENGN---LEIVKLLLENGADINSQDKNGNTALHYAAE---   68 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTT-STTTS-----SSBHHHHHHHTTT---HHHHHHHHHTTTCTT-BSTTSSBHHHHHHH---
T ss_pred             CHHHHHcCCHHHHHHHHHCc-CCCCC-----CCCHHHHHHHcCC---HHHHHHHHHhcccccccCCCCCCHHHHHHH---
Confidence            79999999999999999988 88874     8899999999999   999999999999999999999999999997   


Q ss_pred             CCCcChHHHHHHHHhCCCCCCccc
Q 006236          147 SPLHSRKRAIELLLKGDHTIFEEE  170 (655)
Q Consensus       147 ~~~~g~~eivelLL~~GAdin~~d  170 (655)
                         .++.+++++|+++|++++.+|
T Consensus        69 ---~~~~~~~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   69 ---NGNLEIVKLLLEHGADVNIRN   89 (89)
T ss_dssp             ---TTHHHHHHHHHHTTT-TTSS-
T ss_pred             ---cCCHHHHHHHHHcCCCCCCcC
Confidence               999999999999999999754

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.63  E-value=2.7e-16  Score=154.89  Aligned_cols=140  Identities=20%  Similarity=0.188  Sum_probs=125.5

Q ss_pred             ccccCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcc
Q 006236           11 GALYNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNV   90 (655)
Q Consensus        11 ~l~~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDv   90 (655)
                      ..+..|+|+|+.||+.|.+..+..+|. .|+|++..+             ++..++|++|+..|.++||++||+.+ +||
T Consensus       155 ~~De~GfTpLiWAaa~G~i~vV~fLL~-~GAdp~~lg-------------k~resALsLAt~ggytdiV~lLL~r~-vdV  219 (296)
T KOG0502|consen  155 ACDEFGFTPLIWAAAKGHIPVVQFLLN-SGADPDALG-------------KYRESALSLATRGGYTDIVELLLTRE-VDV  219 (296)
T ss_pred             CccccCchHhHHHHhcCchHHHHHHHH-cCCChhhhh-------------hhhhhhHhHHhcCChHHHHHHHHhcC-CCc
Confidence            344569999999999999998776665 999999985             88899999999999999999999999 999


Q ss_pred             ccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCccc
Q 006236           91 NRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEE  170 (655)
Q Consensus        91 N~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d  170 (655)
                      |.- |.+|-|||-||+..++   .+||+.||..|||++..|..|.+++++|+.      .|+. +|++.|++.+.+...|
T Consensus       220 Nvy-DwNGgTpLlyAvrgnh---vkcve~Ll~sGAd~t~e~dsGy~~mdlAVa------lGyr-~Vqqvie~h~lkl~Q~  288 (296)
T KOG0502|consen  220 NVY-DWNGGTPLLYAVRGNH---VKCVESLLNSGADVTQEDDSGYWIMDLAVA------LGYR-IVQQVIEKHALKLCQD  288 (296)
T ss_pred             cee-ccCCCceeeeeecCCh---HHHHHHHHhcCCCcccccccCCcHHHHHHH------hhhH-HHHHHHHHHHHHHhhc
Confidence            999 9999999999999999   999999999999999999999999999997      5665 8999998888888766


Q ss_pred             ccCCCC
Q 006236          171 ELVNIP  176 (655)
Q Consensus       171 ~~g~tp  176 (655)
                      ....++
T Consensus       289 ~~~~~~  294 (296)
T KOG0502|consen  289 SEKRTP  294 (296)
T ss_pred             ccCCCC
Confidence            555554

>PHA02741 hypothetical protein; Provisional

Probab=99.63  E-value=8.2e-16  Score=149.17  Aligned_cols=115  Identities=16%  Similarity=0.159  Sum_probs=101.3

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHH------cCCCccccccCCCCChHHHHHHHcCCCC-hHHHHHHHHhCCCCCcccCC
Q 006236           60 GFEERTPIMIAAMFGSVAVLKYVIE------TGKVNVNRACGSDGFTALHCAVAGGANS-SFEVVKLLLSASADVNCVDV  132 (655)
Q Consensus        60 d~~G~TPLh~AA~~G~~evvk~LL~------~G~aDvN~~~d~~G~TpLH~Aa~~G~~~-~~eiVklLL~~GADvn~~D~  132 (655)
                      |.+|.||||+|+..|+.+++++|+.      .| ++++.+ |..|.||||+|+..|+.. ..+++++|++.|+++|.+|.
T Consensus        18 ~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~g-a~in~~-d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~   95 (169)
T PHA02741         18 NSEGENFFHEAARCGCFDIIARFTPFIRGDCHA-AALNAT-DDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEM   95 (169)
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHHHhccchhh-hhhhcc-CCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCc
Confidence            4789999999999999999999864      35 889988 899999999999998711 13889999999999999985


Q ss_pred             -CCCCccchhhhccCCCCcChHHHHHHHHh-CCCCCCcccccCCCCcccccc
Q 006236          133 -YGNKPVDLIPVAMKSPLHSRKRAIELLLK-GDHTIFEEEELVNIPVPQLSK  182 (655)
Q Consensus       133 -~G~TPLhlAa~~~~~~~~g~~eivelLL~-~GAdin~~d~~g~tpl~~l~~  182 (655)
                       +|+||||+|+.      .++.+++++||. .|++++.+|.+|.+|+..+..
T Consensus        96 ~~g~TpLh~A~~------~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~  141 (169)
T PHA02741         96 LEGDTALHLAAH------RRDHDLAEWLCCQPGIDLHFCNADNKSPFELAID  141 (169)
T ss_pred             CCCCCHHHHHHH------cCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHH
Confidence             99999999997      899999999997 699999999999999866543

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.61  E-value=5.7e-16  Score=157.47  Aligned_cols=137  Identities=23%  Similarity=0.272  Sum_probs=122.0

Q ss_pred             HHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCC
Q 006236           20 LLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGF   99 (655)
Q Consensus        20 LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~~G~   99 (655)
                      +++.+..|+...++..|.+...|+|.-             |..|.+|||+||+.|+..+++.||..| +.+|.. +....
T Consensus         4 if~wcregna~qvrlwld~tehdln~g-------------ddhgfsplhwaakegh~aivemll~rg-arvn~t-nmgdd   68 (448)
T KOG0195|consen    4 IFGWCREGNAFQVRLWLDDTEHDLNVG-------------DDHGFSPLHWAAKEGHVAIVEMLLSRG-ARVNST-NMGDD   68 (448)
T ss_pred             hhhhhhcCCeEEEEEEecCcccccccc-------------cccCcchhhhhhhcccHHHHHHHHhcc-cccccc-cCCCC
Confidence            345666677767777777666677765             589999999999999999999999999 999998 88889


Q ss_pred             hHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccCCCCccc
Q 006236          100 TALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQ  179 (655)
Q Consensus       100 TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~tpl~~  179 (655)
                      ||||+|+..|+   .+||..||+..+|+|+.+..|+||||||+-      -|.-.|++-|+..||.+++-+..|.+|++.
T Consensus        69 tplhlaaahgh---rdivqkll~~kadvnavnehgntplhyacf------wgydqiaedli~~ga~v~icnk~g~tpldk  139 (448)
T KOG0195|consen   69 TPLHLAAAHGH---RDIVQKLLSRKADVNAVNEHGNTPLHYACF------WGYDQIAEDLISCGAAVNICNKKGMTPLDK  139 (448)
T ss_pred             cchhhhhhccc---HHHHHHHHHHhcccchhhccCCCchhhhhh------hcHHHHHHHHHhccceeeecccCCCCchhh
Confidence            99999999999   999999999999999999999999999974      899999999999999999999999999854


Q ss_pred             c
Q 006236          180 L  180 (655)
Q Consensus       180 l  180 (655)
                      .
T Consensus       140 a  140 (448)
T KOG0195|consen  140 A  140 (448)
T ss_pred             h
Confidence            3

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.59  E-value=2.6e-15  Score=145.48  Aligned_cols=116  Identities=15%  Similarity=0.126  Sum_probs=102.1

Q ss_pred             CCCCChHHHHHHHcCCH----HHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccC-CCC
Q 006236           60 GFEERTPIMIAAMFGSV----AVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVD-VYG  134 (655)
Q Consensus        60 d~~G~TPLh~AA~~G~~----evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D-~~G  134 (655)
                      +.++.++||.||..|++    +++++|++.+ ++++.. +..|+||||+|+..|+.+..+++++|++.|+++|.+| ..|
T Consensus        17 ~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g-~~~~~~-d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g   94 (166)
T PHA02743         17 DEDEQNTFLRICRTGNIYELMEVAPFISGDG-HLLHRY-DHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTG   94 (166)
T ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHHHhhcc-hhhhcc-CCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCC
Confidence            57889999999999998    6667788888 999988 8999999999999998444556899999999999998 589


Q ss_pred             CCccchhhhccCCCCcChHHHHHHHHh-CCCCCCcccccCCCCccccccc
Q 006236          135 NKPVDLIPVAMKSPLHSRKRAIELLLK-GDHTIFEEEELVNIPVPQLSKD  183 (655)
Q Consensus       135 ~TPLhlAa~~~~~~~~g~~eivelLL~-~GAdin~~d~~g~tpl~~l~~~  183 (655)
                      .||||+|+.      .++.+++++|+. .|++++..+..|.+|+..+...
T Consensus        95 ~TpLh~A~~------~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~  138 (166)
T PHA02743         95 NTLLHIAAS------TKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKM  138 (166)
T ss_pred             CcHHHHHHH------hCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHc
Confidence            999999997      899999999995 8999999999999998665443

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.58  E-value=4.2e-15  Score=162.17  Aligned_cols=145  Identities=28%  Similarity=0.362  Sum_probs=127.8

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA   93 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~   93 (655)
                      -+|.|+||.++...+.+.|+.+++ +|++||..+             .+|+||||.|+..|++.++++||.+| +++-..
T Consensus        71 ~DglTalhq~~id~~~e~v~~l~e-~ga~Vn~~d-------------~e~wtPlhaaascg~~~i~~~li~~g-A~~~av  135 (527)
T KOG0505|consen   71 VDGLTALHQACIDDNLEMVKFLVE-NGANVNAQD-------------NEGWTPLHAAASCGYLNIVEYLIQHG-ANLLAV  135 (527)
T ss_pred             CccchhHHHHHhcccHHHHHHHHH-hcCCccccc-------------cccCCcchhhcccccHHHHHHHHHhh-hhhhhc
Confidence            467899999988888888877776 999999985             99999999999999999999999998 653321


Q ss_pred             ----------------------------------------------------------cCCCCChHHHHHHHcCCCChHH
Q 006236           94 ----------------------------------------------------------CGSDGFTALHCAVAGGANSSFE  115 (655)
Q Consensus        94 ----------------------------------------------------------~d~~G~TpLH~Aa~~G~~~~~e  115 (655)
                                                                                ....|.|+||.|+..|.   .+
T Consensus       136 Nsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy---~e  212 (527)
T KOG0505|consen  136 NSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGY---TE  212 (527)
T ss_pred             cCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhH---HH
Confidence                                                                      02348999999999999   99


Q ss_pred             HHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccCCCCcccccc
Q 006236          116 VVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLSK  182 (655)
Q Consensus       116 iVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~tpl~~l~~  182 (655)
                      +.++||.+|.+++.+|.+|+||||.|+.      -+..+++++|+.+|++++.+...|.+|+++...
T Consensus       213 ~~~lLl~ag~~~~~~D~dgWtPlHAAA~------Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  213 VAALLLQAGYSVNIKDYDGWTPLHAAAH------WGQEDACELLVEHGADMDAKTKMGETPLDVADE  273 (527)
T ss_pred             HHHHHHHhccCcccccccCCCcccHHHH------hhhHhHHHHHHHhhcccchhhhcCCCCccchhh
Confidence            9999999999999999999999999986      899999999999999999999889988876543

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.58  E-value=3.4e-15  Score=177.27  Aligned_cols=140  Identities=22%  Similarity=0.285  Sum_probs=79.9

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCC--------------------cccccccCCccCCCCCChHHHHHHHc
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPS--------------------FWYGRRIGSKKMGFEERTPIMIAAMF   73 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~d--------------------lw~g~~~~~~~~d~~G~TPLh~AA~~   73 (655)
                      ..|+|+|+.++..|+.+.+.-+++ .++.++...                    ..+...++....+..|.||||+|+.+
T Consensus       472 ~~G~T~Lhlaaq~Gh~~~~~llle-~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~  550 (1143)
T KOG4177|consen  472 KQGFTPLHLAAQEGHTEVVQLLLE-GGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHY  550 (1143)
T ss_pred             cccCcchhhhhccCCchHHHHhhh-cCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhc
Confidence            456677777777776666555554 443333321                    00000111111235556666666666


Q ss_pred             CCHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChH
Q 006236           74 GSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRK  153 (655)
Q Consensus        74 G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~  153 (655)
                      |++++|++||++| +|++.+ ++.|+||||.|+..|+   .+|+.+|+++||++|..|.+|.|||++|+.      .++.
T Consensus       551 g~v~~VkfLLe~g-Adv~ak-~~~G~TPLH~Aa~~G~---~~i~~LLlk~GA~vna~d~~g~TpL~iA~~------lg~~  619 (1143)
T KOG4177|consen  551 GNVDLVKFLLEHG-ADVNAK-DKLGYTPLHQAAQQGH---NDIAELLLKHGASVNAADLDGFTPLHIAVR------LGYL  619 (1143)
T ss_pred             CCchHHHHhhhCC-cccccc-CCCCCChhhHHHHcCh---HHHHHHHHHcCCCCCcccccCcchhHHHHH------hccc
Confidence            6666666666666 666666 5666666666666665   666666666666666666666666666655      5666


Q ss_pred             HHHHHHHhCCCC
Q 006236          154 RAIELLLKGDHT  165 (655)
Q Consensus       154 eivelLL~~GAd  165 (655)
                      +++++|+..+++
T Consensus       620 ~~~k~l~~~~~~  631 (1143)
T KOG4177|consen  620 SVVKLLKVVTAT  631 (1143)
T ss_pred             chhhHHHhccCc
Confidence            666666666655

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.57  E-value=4e-15  Score=176.69  Aligned_cols=155  Identities=26%  Similarity=0.282  Sum_probs=123.3

Q ss_pred             CCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCC----------------------cccccccCCccCCCCCChHHHHHHH
Q 006236           15 NKSSILLELSASDDISAFKREIEEKGFDVDEPS----------------------FWYGRRIGSKKMGFEERTPIMIAAM   72 (655)
Q Consensus        15 ~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~d----------------------lw~g~~~~~~~~d~~G~TPLh~AA~   72 (655)
                      .|+|++|.+|..|.+..+..++.+.|.++|..-                      +|.++  ..+-....|.|+||.|+.
T Consensus       439 lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~--~~~~~~~~~l~~lhla~~  516 (1143)
T KOG4177|consen  439 LGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGA--NDNLDAKKGLTPLHLAAD  516 (1143)
T ss_pred             cCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCC--ccCccchhccchhhhhhh
Confidence            479999999999988888888888999999874                      00000  001111334555555555


Q ss_pred             cCCHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcCh
Q 006236           73 FGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSR  152 (655)
Q Consensus        73 ~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~  152 (655)
                      .+...+++.+++.| ++++.+ +..|.||||.|+.+|+   +++|++||++|||++.+|..|+||||.|+.      .|+
T Consensus       517 ~~~v~~~~~l~~~g-a~v~~~-~~r~~TpLh~A~~~g~---v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~------~G~  585 (1143)
T KOG4177|consen  517 EDTVKVAKILLEHG-ANVDLR-TGRGYTPLHVAVHYGN---VDLVKFLLEHGADVNAKDKLGYTPLHQAAQ------QGH  585 (1143)
T ss_pred             hhhHHHHHHHhhcC-Cceehh-cccccchHHHHHhcCC---chHHHHhhhCCccccccCCCCCChhhHHHH------cCh
Confidence            55555555555566 777777 8899999999999999   999999999999999999999999999997      889


Q ss_pred             HHHHHHHHhCCCCCCcccccCCCCcccccc
Q 006236          153 KRAIELLLKGDHTIFEEEELVNIPVPQLSK  182 (655)
Q Consensus       153 ~eivelLL~~GAdin~~d~~g~tpl~~l~~  182 (655)
                      .+|+++|+++||++|..|.++.+|+.....
T Consensus       586 ~~i~~LLlk~GA~vna~d~~g~TpL~iA~~  615 (1143)
T KOG4177|consen  586 NDIAELLLKHGASVNAADLDGFTPLHIAVR  615 (1143)
T ss_pred             HHHHHHHHHcCCCCCcccccCcchhHHHHH
Confidence            999999999999999999999999854443

>PHA02730 ankyrin-like protein; Provisional

Probab=99.57  E-value=1.3e-14  Score=166.33  Aligned_cols=140  Identities=13%  Similarity=0.189  Sum_probs=115.4

Q ss_pred             HHHHHHHhCC--HHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCC----HHHHHHHHHcCCC--cc
Q 006236           19 ILLELSASDD--ISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGS----VAVLKYVIETGKV--NV   90 (655)
Q Consensus        19 ~LL~AAa~gd--~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~----~evvk~LL~~G~a--Dv   90 (655)
                      .|+.....++  ...+.++|.++|++||..              ..|.||||+|+..++    .+++++||++| +  |+
T Consensus       346 ~l~~Y~~~~~~v~ieIvelLIs~GAdIN~k--------------~~G~TpLH~Aa~~nnn~i~~eIvelLIs~G-a~~dI  410 (672)
T PHA02730        346 MLINYLHYGDMVSIPILRCMLDNGATMDKT--------------TDNNYPLHDYFVNNNNIVDVNVVRFIVENN-GHMAI  410 (672)
T ss_pred             HHHHHHhcCCcCcHHHHHHHHHCCCCCCcC--------------CCCCcHHHHHHHHcCCcchHHHHHHHHHcC-CCccc
Confidence            5666777664  446677777799999974              579999999998885    89999999998 6  69


Q ss_pred             ccccCCCCChHHHH---HHHcCC-----C-ChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHh
Q 006236           91 NRACGSDGFTALHC---AVAGGA-----N-SSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLK  161 (655)
Q Consensus        91 N~~~d~~G~TpLH~---Aa~~G~-----~-~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~  161 (655)
                      |.+ |..|.||||.   |...+.     + ...+++++|+.+|||+|.+|..|.||||+|+.      .++.+++++|++
T Consensus       411 N~k-d~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~------~~~~eive~LI~  483 (672)
T PHA02730        411 NHV-SNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDNENKTLLYYAVD------VNNIQFARRLLE  483 (672)
T ss_pred             ccc-ccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcccchhccCCCCCCHHHHHHH------hCCHHHHHHHHH
Confidence            988 8899999994   332221     0 12467999999999999999999999999987      789999999999


Q ss_pred             CCCCCCcccc-cCCCCcccc
Q 006236          162 GDHTIFEEEE-LVNIPVPQL  180 (655)
Q Consensus       162 ~GAdin~~d~-~g~tpl~~l  180 (655)
                      +||+++..+. .|.+++...
T Consensus       484 ~GAdIN~~d~~~g~TaL~~A  503 (672)
T PHA02730        484 YGASVNTTSRSIINTAIQKS  503 (672)
T ss_pred             CCCCCCCCCCcCCcCHHHHH
Confidence            9999999996 588888544

>PHA02917 ankyrin-like protein; Provisional

Probab=99.57  E-value=1.2e-14  Score=168.99  Aligned_cols=108  Identities=22%  Similarity=0.156  Sum_probs=88.6

Q ss_pred             HHhcCCCCCCCCcccccccCCccCCCCCChHHHHHH--HcCCHHHHHHHHHcCCCcccccc--CCCC-----------Ch
Q 006236           36 IEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAA--MFGSVAVLKYVIETGKVNVNRAC--GSDG-----------FT  100 (655)
Q Consensus        36 L~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA--~~G~~evvk~LL~~G~aDvN~~~--d~~G-----------~T  100 (655)
                      |.++|+|+|.+             |..|+||||+|+  ..|+.+++++||++| +|+|...  +..|           .|
T Consensus       122 Ll~~Gadin~~-------------d~~g~T~L~~~~a~~~~~~eivklLi~~G-a~vn~~d~~~~~g~~~~~~~~~~~~t  187 (661)
T PHA02917        122 LVEHGFDLSVK-------------CENHRSVIENYVMTDDPVPEIIDLFIENG-CSVLYEDEDDEYGYAYDDYQPRNCGT  187 (661)
T ss_pred             HHHcCCCCCcc-------------CCCCccHHHHHHHccCCCHHHHHHHHHcC-CCcccccccccccccccccccccccc
Confidence            33466666665             589999999654  578999999999999 9998651  2234           59


Q ss_pred             HHHHHHH-----------cCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcCh--HHHHHHHHhCCCCCC
Q 006236          101 ALHCAVA-----------GGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSR--KRAIELLLKGDHTIF  167 (655)
Q Consensus       101 pLH~Aa~-----------~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~--~eivelLL~~GAdin  167 (655)
                      |||+|+.           +++   .++|++|+++|||+|.+|.+|.||||+|+.      .++  .+++++|++ |++++
T Consensus       188 ~L~~a~~~~~~~~~~~~~~~~---~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~------~g~~~~eivk~Li~-g~d~~  257 (661)
T PHA02917        188 VLHLYIISHLYSESDTRAYVR---PEVVKCLINHGIKPSSIDKNYCTALQYYIK------SSHIDIDIVKLLMK-GIDNT  257 (661)
T ss_pred             HHHHHHhhcccccccccccCc---HHHHHHHHHCCCCcccCCCCCCcHHHHHHH------cCCCcHHHHHHHHh-CCccc
Confidence            9999986           346   899999999999999999999999999987      565  489999985 88776

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.55  E-value=1.5e-14  Score=152.87  Aligned_cols=114  Identities=16%  Similarity=0.151  Sum_probs=100.3

Q ss_pred             CCCCCChH-HHHHHHcCCHHHHHHHHHcCCCcccccc---CCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCccc-CCC
Q 006236           59 MGFEERTP-IMIAAMFGSVAVLKYVIETGKVNVNRAC---GSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCV-DVY  133 (655)
Q Consensus        59 ~d~~G~TP-Lh~AA~~G~~evvk~LL~~G~aDvN~~~---d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~-D~~  133 (655)
                      .|..|+|+ ||.|+.+|+.+++++|+++| +|+|...   +..|.||||+|+..|+   .+++++|+++|||+|.. +..
T Consensus        28 ~d~~~~~~lL~~A~~~~~~eivk~LL~~G-AdiN~~~~~sd~~g~TpLh~Aa~~~~---~eivklLL~~GADVN~~~~~~  103 (300)
T PHA02884         28 KNKICIANILYSSIKFHYTDIIDAILKLG-ADPEAPFPLSENSKTNPLIYAIDCDN---DDAAKLLIRYGADVNRYAEEA  103 (300)
T ss_pred             cCcCCCCHHHHHHHHcCCHHHHHHHHHCC-CCccccCcccCCCCCCHHHHHHHcCC---HHHHHHHHHcCCCcCcccCCC
Confidence            35667665 56667779999999999999 9999862   3589999999999999   99999999999999986 468


Q ss_pred             CCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccCCCCcccccc
Q 006236          134 GNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLSK  182 (655)
Q Consensus       134 G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~tpl~~l~~  182 (655)
                      |.||||+|+.      .++.+++++|+.+|++++.+|..|.+|+..+..
T Consensus       104 g~TpLh~Aa~------~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~  146 (300)
T PHA02884        104 KITPLYISVL------HGCLKCLEILLSYGADINIQTNDMVTPIELALM  146 (300)
T ss_pred             CCCHHHHHHH------cCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence            9999999987      899999999999999999999999999865543

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.54  E-value=4.2e-14  Score=121.77  Aligned_cols=89  Identities=35%  Similarity=0.522  Sum_probs=79.4

Q ss_pred             HHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCC
Q 006236           20 LLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGF   99 (655)
Q Consensus        20 LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~~G~   99 (655)
                      ||.|+..|+.+.++.++. .+.+++.                 |+||||+|+..|+.+++++|++.| ++++.. +..|+
T Consensus         1 L~~A~~~~~~~~~~~ll~-~~~~~~~-----------------~~~~l~~A~~~~~~~~~~~Ll~~g-~~~~~~-~~~g~   60 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLE-KGADINL-----------------GNTALHYAAENGNLEIVKLLLENG-ADINSQ-DKNGN   60 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHH-TTSTTTS-----------------SSBHHHHHHHTTTHHHHHHHHHTT-TCTT-B-STTSS
T ss_pred             CHHHHHcCCHHHHHHHHH-CcCCCCC-----------------CCCHHHHHHHcCCHHHHHHHHHhc-cccccc-CCCCC
Confidence            688999999999999988 7766553                 679999999999999999999999 999998 89999


Q ss_pred             hHHHHHHHcCCCChHHHHHHHHhCCCCCcccC
Q 006236          100 TALHCAVAGGANSSFEVVKLLLSASADVNCVD  131 (655)
Q Consensus       100 TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D  131 (655)
                      ||||+|+..|+   .+++++|+++|++++.+|
T Consensus        61 t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   61 TALHYAAENGN---LEIVKLLLEHGADVNIRN   89 (89)
T ss_dssp             BHHHHHHHTTH---HHHHHHHHHTTT-TTSS-
T ss_pred             CHHHHHHHcCC---HHHHHHHHHcCCCCCCcC
Confidence            99999999999   999999999999999875

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.53  E-value=2.2e-14  Score=146.07  Aligned_cols=129  Identities=21%  Similarity=0.254  Sum_probs=107.8

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA   93 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~   93 (655)
                      .+|+++||.+|..|... +++.|+..|+.||..+             ....||||+||.+|+-++|..||+.. +|+|..
T Consensus        32 dhgfsplhwaakegh~a-ivemll~rgarvn~tn-------------mgddtplhlaaahghrdivqkll~~k-advnav   96 (448)
T KOG0195|consen   32 DHGFSPLHWAAKEGHVA-IVEMLLSRGARVNSTN-------------MGDDTPLHLAAAHGHRDIVQKLLSRK-ADVNAV   96 (448)
T ss_pred             ccCcchhhhhhhcccHH-HHHHHHhccccccccc-------------CCCCcchhhhhhcccHHHHHHHHHHh-cccchh
Confidence            57899888777766655 4555556999999985             56689999999999999999999999 999999


Q ss_pred             cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCC
Q 006236           94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIF  167 (655)
Q Consensus        94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin  167 (655)
                       +..|+|||||||.-|.   ..|.+-|+..||-+++.+++|.|||+.|..      .-...+.++--++|-+++
T Consensus        97 -nehgntplhyacfwgy---dqiaedli~~ga~v~icnk~g~tpldkakp------~l~~~l~e~aek~gq~~n  160 (448)
T KOG0195|consen   97 -NEHGNTPLHYACFWGY---DQIAEDLISCGAAVNICNKKGMTPLDKAKP------MLKNTLLEIAEKHGQSPN  160 (448)
T ss_pred             -hccCCCchhhhhhhcH---HHHHHHHHhccceeeecccCCCCchhhhch------HHHHHHHHHHHHhCCCCC
Confidence             9999999999999998   889999999999999999999999999853      222334444445777776

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.53  E-value=1.9e-14  Score=169.81  Aligned_cols=159  Identities=16%  Similarity=0.106  Sum_probs=109.3

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCC--CCCCCcccccc---------------cC------------CccCCCCCC
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFD--VDEPSFWYGRR---------------IG------------SKKMGFEER   64 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~Gad--In~~dlw~g~~---------------~~------------~~~~d~~G~   64 (655)
                      ..|.|+||++|+.++...++++|++.|..  ....-+.+.+.               .+            .......|.
T Consensus        50 ~~G~t~Lh~~A~~~~~~eiv~lLl~~g~~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~  129 (743)
T TIGR00870        50 RLGRSALFVAAIENENLELTELLLNLSCRGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGI  129 (743)
T ss_pred             ccchhHHHHHHHhcChHHHHHHHHhCCCCCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCC
Confidence            45788888888888888888888878751  11111111111               00            001124588


Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCccccccC-------------CCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccC
Q 006236           65 TPIMIAAMFGSVAVLKYVIETGKVNVNRACG-------------SDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVD  131 (655)
Q Consensus        65 TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d-------------~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D  131 (655)
                      ||||+||..|+.++|++||++| +|+|..++             ..|.||||+|+..|+   .+++++|++.|+|+|.+|
T Consensus       130 TpLhlAa~~~~~eiVklLL~~G-Adv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~---~~iv~lLl~~gadin~~d  205 (743)
T TIGR00870       130 TALHLAAHRQNYEIVKLLLERG-ASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGS---PSIVALLSEDPADILTAD  205 (743)
T ss_pred             cHHHHHHHhCCHHHHHHHHhCC-CCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCC---HHHHHHHhcCCcchhhHh
Confidence            8888888888888888888888 88886532             357888888888888   888888888888888888


Q ss_pred             CCCCCccchhhhccCCCCcC---------hHHHHHHHHhCCCCC-------CcccccCCCCcccccc
Q 006236          132 VYGNKPVDLIPVAMKSPLHS---------RKRAIELLLKGDHTI-------FEEEELVNIPVPQLSK  182 (655)
Q Consensus       132 ~~G~TPLhlAa~~~~~~~~g---------~~eivelLL~~GAdi-------n~~d~~g~tpl~~l~~  182 (655)
                      ..|+||||+|+.      .+         ...+.++++..++..       ++.|.+|.+|+..+..
T Consensus       206 ~~g~T~Lh~A~~------~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~  266 (743)
T TIGR00870       206 SLGNTLLHLLVM------ENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAK  266 (743)
T ss_pred             hhhhHHHHHHHh------hhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhh
Confidence            888888888875      22         234555666555544       5567777777755543

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02730 ankyrin-like protein; Provisional

Probab=99.52  E-value=4.5e-14  Score=162.00  Aligned_cols=133  Identities=16%  Similarity=0.105  Sum_probs=110.2

Q ss_pred             cCCchHHHHHHHhCCH---HHHHHHHHhcCC--CCCCCCcccccccCCccCCCCCChHHHH--HHH-cC---------CH
Q 006236           14 YNKSSILLELSASDDI---SAFKREIEEKGF--DVDEPSFWYGRRIGSKKMGFEERTPIMI--AAM-FG---------SV   76 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~---~~vk~LL~~~Ga--dIn~~dlw~g~~~~~~~~d~~G~TPLh~--AA~-~G---------~~   76 (655)
                      ..|.||||.||..++.   ..+.++|..+|+  ++|.++             ..|.||||.  ++. .+         ..
T Consensus       376 ~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd-------------~~G~T~Lh~~i~a~~~n~~~~~~e~~~~  442 (672)
T PHA02730        376 TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVS-------------NNGRLCMYGLILSRFNNCGYHCYETILI  442 (672)
T ss_pred             CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccc-------------cCCCchHhHHHHHHhccccccccchhHH
Confidence            4688999999998852   455555556887  588774             889999984  332 32         23


Q ss_pred             HHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCC-CCCCccchhhhccCCCCcChHHH
Q 006236           77 AVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDV-YGNKPVDLIPVAMKSPLHSRKRA  155 (655)
Q Consensus        77 evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~-~G~TPLhlAa~~~~~~~~g~~ei  155 (655)
                      +++++|+.+| +|+|.+ |..|.||||+|+..++   .+++++|+++||++|..|. .|.||||+|+.    ...++.++
T Consensus       443 ~ivk~LIs~G-ADINak-D~~G~TPLh~Aa~~~~---~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~----~~~~~~eI  513 (672)
T PHA02730        443 DVFDILSKYM-DDIDMI-DNENKTLLYYAVDVNN---IQFARRLLEYGASVNTTSRSIINTAIQKSSY----RRENKTKL  513 (672)
T ss_pred             HHHHHHHhcc-cchhcc-CCCCCCHHHHHHHhCC---HHHHHHHHHCCCCCCCCCCcCCcCHHHHHHH----hhcCcHHH
Confidence            5799999999 999999 9999999999999999   9999999999999999997 59999999974    12368999


Q ss_pred             HHHHHhCCCCCCc
Q 006236          156 IELLLKGDHTIFE  168 (655)
Q Consensus       156 velLL~~GAdin~  168 (655)
                      +++||++|++++.
T Consensus       514 v~~LLs~ga~i~~  526 (672)
T PHA02730        514 VDLLLSYHPTLET  526 (672)
T ss_pred             HHHHHHcCCCHHH
Confidence            9999999998874

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.51  E-value=1.4e-14  Score=137.79  Aligned_cols=115  Identities=17%  Similarity=0.147  Sum_probs=93.3

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHHcC-CCc-----cccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccC-
Q 006236           59 MGFEERTPIMIAAMFGSVAVLKYVIETG-KVN-----VNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVD-  131 (655)
Q Consensus        59 ~d~~G~TPLh~AA~~G~~evvk~LL~~G-~aD-----vN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D-  131 (655)
                      .|.+|.||||+|+..|++  +++++..+ ..+     ++.. |..|.||||+|+..|+.+..+++++|++.|+++|.+| 
T Consensus        13 ~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~-d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~   89 (154)
T PHA02736         13 PDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEY-NRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKER   89 (154)
T ss_pred             cCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHh-cCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCC
Confidence            368899999999999984  33333222 012     3344 7899999999999998434467999999999999998 


Q ss_pred             CCCCCccchhhhccCCCCcChHHHHHHHHh-CCCCCCcccccCCCCcccccc
Q 006236          132 VYGNKPVDLIPVAMKSPLHSRKRAIELLLK-GDHTIFEEEELVNIPVPQLSK  182 (655)
Q Consensus       132 ~~G~TPLhlAa~~~~~~~~g~~eivelLL~-~GAdin~~d~~g~tpl~~l~~  182 (655)
                      .+|+||||+|+.      .++.+++++|+. .|++++.++..|.+|+..+..
T Consensus        90 ~~g~T~Lh~A~~------~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~  135 (154)
T PHA02736         90 VFGNTPLHIAVY------TQNYELATWLCNQPGVNMEILNYAFKTPYYVACE  135 (154)
T ss_pred             CCCCcHHHHHHH------hCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHH
Confidence            499999999997      899999999997 599999999999999865543

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.48  E-value=5.1e-13  Score=118.55  Aligned_cols=122  Identities=34%  Similarity=0.499  Sum_probs=108.6

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA   93 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~   93 (655)
                      .+|.|+|+.|+..++.+.+..++. .+.+++..             +..|.||||+|+..++.+++++|++.+ ++++..
T Consensus         5 ~~g~t~l~~a~~~~~~~~i~~li~-~~~~~~~~-------------~~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~   69 (126)
T cd00204           5 EDGRTPLHLAASNGHLEVVKLLLE-NGADVNAK-------------DNDGRTPLHLAAKNGHLEIVKLLLEKG-ADVNAR   69 (126)
T ss_pred             cCCCCHHHHHHHcCcHHHHHHHHH-cCCCCCcc-------------CCCCCcHHHHHHHcCCHHHHHHHHHcC-CCcccc
Confidence            458899999999999877776665 88887666             488999999999999999999999999 889888


Q ss_pred             cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHH
Q 006236           94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLL  160 (655)
Q Consensus        94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL  160 (655)
                       +..|.||+|+|+..++   .+++++|+..+.+++..|..|.||+++|..      .++.+++++|+
T Consensus        70 -~~~~~~~l~~a~~~~~---~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~~~Ll  126 (126)
T cd00204          70 -DKDGNTPLHLAARNGN---LDVVKLLLKHGADVNARDKDGRTPLHLAAK------NGHLEVVKLLL  126 (126)
T ss_pred             -CCCCCCHHHHHHHcCc---HHHHHHHHHcCCCCcccCCCCCCHHHHHHh------cCCHHHHHHhC
Confidence             7899999999999999   999999999999999999999999999986      68888888874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.48  E-value=1.1e-13  Score=119.89  Aligned_cols=103  Identities=28%  Similarity=0.440  Sum_probs=93.3

Q ss_pred             HHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccCCCC
Q 006236           19 ILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDG   98 (655)
Q Consensus        19 ~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~~G   98 (655)
                      .+.....+|.++.+++.+. .|.+||..              ..|+||||+||-+|..+++++|+..| ++|+.+ |+.|
T Consensus         5 ~~~W~vkNG~~DeVk~~v~-~g~nVn~~--------------~ggR~plhyAAD~GQl~ilefli~iG-A~i~~k-DKyg   67 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVN-EGLNVNEI--------------YGGRTPLHYAADYGQLSILEFLISIG-ANIQDK-DKYG   67 (117)
T ss_pred             hHhhhhccCcHHHHHHHHH-ccccHHHH--------------hCCcccchHhhhcchHHHHHHHHHhc-cccCCc-cccC
Confidence            4567788999999999987 77899986              67999999999999999999999999 999999 9999


Q ss_pred             ChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchh
Q 006236           99 FTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLI  141 (655)
Q Consensus        99 ~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlA  141 (655)
                      .|||.-|+..|+   .++|++||+.|||-.....+|.+.+..+
T Consensus        68 ITPLLsAvwEGH---~~cVklLL~~GAdrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   68 ITPLLSAVWEGH---RDCVKLLLQNGADRTIHAPDGTALIEAT  107 (117)
T ss_pred             CcHHHHHHHHhh---HHHHHHHHHcCcccceeCCCchhHHhhc
Confidence            999999999999   9999999999999988888888776653

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.47  E-value=8.7e-14  Score=164.20  Aligned_cols=147  Identities=22%  Similarity=0.320  Sum_probs=119.2

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHh-cCCCCCCCCcccccccCCccCCCCCChHHH-HHHHcCCHHHHHHHHHcCCCc--
Q 006236           14 YNKSSILLELSASDDISAFKREIEE-KGFDVDEPSFWYGRRIGSKKMGFEERTPIM-IAAMFGSVAVLKYVIETGKVN--   89 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~-~GadIn~~dlw~g~~~~~~~~d~~G~TPLh-~AA~~G~~evvk~LL~~G~aD--   89 (655)
                      .++...|+.||..||.+.++++|++ .+.++|..|             ..|+|||| .|+..++.+++++|++.+ +.  
T Consensus        15 ~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d-------------~~G~t~Lh~~A~~~~~~eiv~lLl~~g-~~~~   80 (743)
T TIGR00870        15 SDEEKAFLPAAERGDLASVYRDLEEPKKLNINCPD-------------RLGRSALFVAAIENENLELTELLLNLS-CRGA   80 (743)
T ss_pred             CHHHHHHHHHHHcCCHHHHHHHhccccccCCCCcC-------------ccchhHHHHHHHhcChHHHHHHHHhCC-CCCC
Confidence            4567889999999999999999873 278888764             67788888 677777777777777776 20  


Q ss_pred             ------------------------------------cccc---cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCccc
Q 006236           90 ------------------------------------VNRA---CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCV  130 (655)
Q Consensus        90 ------------------------------------vN~~---~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~  130 (655)
                                                          ++..   ....|.||||+|+..|+   .++|++|+++|||++.+
T Consensus        81 ~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~---~eiVklLL~~GAdv~~~  157 (743)
T TIGR00870        81 VGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQN---YEIVKLLLERGASVPAR  157 (743)
T ss_pred             cChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCC---HHHHHHHHhCCCCCCcC
Confidence                                                0000   02359999999999999   99999999999999965


Q ss_pred             C--------------CCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccCCCCccccccc
Q 006236          131 D--------------VYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLSKD  183 (655)
Q Consensus       131 D--------------~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~tpl~~l~~~  183 (655)
                      +              ..|.||||+|+.      .++.+++++|+++|+|++..|..|.++++.+...
T Consensus       158 ~~~~~~~~~~~~~~~~~g~tpL~~Aa~------~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~  218 (743)
T TIGR00870       158 ACGDFFVKSQGVDSFYHGESPLNAAAC------LGSPSIVALLSEDPADILTADSLGNTLLHLLVME  218 (743)
T ss_pred             cCCchhhcCCCCCcccccccHHHHHHH------hCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhh
Confidence            3              368999999987      8999999999999999999999999998765544

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.46  E-value=6.7e-14  Score=157.34  Aligned_cols=144  Identities=19%  Similarity=0.144  Sum_probs=115.5

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA   93 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~   93 (655)
                      ++|+|.||||+.+|....++.+|+ +.+-++..+             ..|.+|||+||..|+.+++|.||..+ ..+|..
T Consensus        47 ~~gfTalhha~Lng~~~is~llle-~ea~ldl~d-------------~kg~~plhlaaw~g~~e~vkmll~q~-d~~na~  111 (854)
T KOG0507|consen   47 YSGFTLLHHAVLNGQNQISKLLLD-YEALLDLCD-------------TKGILPLHLAAWNGNLEIVKMLLLQT-DILNAV  111 (854)
T ss_pred             ccchhHHHHHHhcCchHHHHHHhc-chhhhhhhh-------------ccCcceEEehhhcCcchHHHHHHhcc-cCCCcc
Confidence            578999999999998888777665 666677663             77888888888888888888888888 777877


Q ss_pred             cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhh------------------------------
Q 006236           94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPV------------------------------  143 (655)
Q Consensus        94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~------------------------------  143 (655)
                       ...|.||||.|+..|+   .+++.+||.+|+|+-..|..+.|+|++|++                              
T Consensus       112 -~~e~~tplhlaaqhgh---~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~  187 (854)
T KOG0507|consen  112 -NIENETPLHLAAQHGH---LEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPF  187 (854)
T ss_pred             -cccCcCccchhhhhcc---hHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCC
Confidence             7888888888888888   888888888888887777777777777766                              


Q ss_pred             -----ccCCCCcChHHHHHHHHhCCCCCCcccccCCCC
Q 006236          144 -----AMKSPLHSRKRAIELLLKGDHTIFEEEELVNIP  176 (655)
Q Consensus       144 -----~~~~~~~g~~eivelLL~~GAdin~~d~~g~tp  176 (655)
                           .|.+..+|+.+|++.|++.|.+||...+.|..-
T Consensus       188 ~~~~plHlaakngh~~~~~~ll~ag~din~~t~~gtal  225 (854)
T KOG0507|consen  188 PAIYPLHLAAKNGHVECMQALLEAGFDINYTTEDGTAL  225 (854)
T ss_pred             CCcCCcchhhhcchHHHHHHHHhcCCCcccccccchhh
Confidence                 134556899999999999999999866665443

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.45  E-value=2.1e-13  Score=142.91  Aligned_cols=124  Identities=27%  Similarity=0.375  Sum_probs=107.7

Q ss_pred             cCCchHHHHHHHh-----CCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCC
Q 006236           14 YNKSSILLELSAS-----DDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKV   88 (655)
Q Consensus        14 ~~g~s~LL~AAa~-----gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~a   88 (655)
                      ..|+|+++.+|..     .+...|.+|+. . .|||.+.            ...|.|+||+|+.+|++++||.||..| +
T Consensus       300 rAGYtpiMLaALA~lk~~~d~~vV~~LF~-m-gnVNaKA------------sQ~gQTALMLAVSHGr~d~vk~LLacg-A  364 (452)
T KOG0514|consen  300 RAGYTPVMLAALAKLKQPADRTVVERLFK-M-GDVNAKA------------SQHGQTALMLAVSHGRVDMVKALLACG-A  364 (452)
T ss_pred             cccccHHHHHHHHhhcchhhHHHHHHHHh-c-cCcchhh------------hhhcchhhhhhhhcCcHHHHHHHHHcc-C
Confidence            4689998877653     35555666654 3 4678764            478999999999999999999999999 9


Q ss_pred             ccccccCCCCChHHHHHHHcCCCChHHHHHHHHhC-CCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhC
Q 006236           89 NVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA-SADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKG  162 (655)
Q Consensus        89 DvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~-GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~  162 (655)
                      |||.. |.+|.|+|+||+..|+   .|||++||.. ++|+...|.+|.|+|.+|..      .|+.+|.-+|..+
T Consensus       365 dVNiQ-DdDGSTALMCA~EHGh---kEivklLLA~p~cd~sLtD~DgSTAl~IAle------agh~eIa~mlYa~  429 (452)
T KOG0514|consen  365 DVNIQ-DDDGSTALMCAAEHGH---KEIVKLLLAVPSCDISLTDVDGSTALSIALE------AGHREIAVMLYAH  429 (452)
T ss_pred             CCccc-cCCccHHHhhhhhhCh---HHHHHHHhccCcccceeecCCCchhhhhHHh------cCchHHHHHHHHH
Confidence            99999 9999999999999999   9999999976 79999999999999999986      8999999988754

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.43  E-value=1.6e-12  Score=126.52  Aligned_cols=123  Identities=31%  Similarity=0.417  Sum_probs=111.1

Q ss_pred             CchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCC-----HHHHHHHHHcCCC--
Q 006236           16 KSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGS-----VAVLKYVIETGKV--   88 (655)
Q Consensus        16 g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~-----~evvk~LL~~G~a--   88 (655)
                      +.++++.++..++...+..++. .|++++..+             .+|.||||+|+..++     .+++++||+.| +  
T Consensus        73 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~-------------~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g-~~~  137 (235)
T COG0666          73 GRLPLHSAASKGDDKIVKLLLA-SGADVNAKD-------------ADGDTPLHLAALNGNPPEGNIEVAKLLLEAG-ADL  137 (235)
T ss_pred             ccCHHHHHHHcCcHHHHHHHHH-cCCCccccc-------------CCCCcHHHHHHhcCCcccchHHHHHHHHHcC-CCC
Confidence            5688888888888888755554 999998874             999999999999999     99999999999 7  


Q ss_pred             -ccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCC
Q 006236           89 -NVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGD  163 (655)
Q Consensus        89 -DvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~G  163 (655)
                       +.+.. +..|.||||+|+..|+   .+++++|++.|++++..+..|.|++++|+.      .++.++++.|++.+
T Consensus       138 ~~~~~~-~~~g~tpl~~A~~~~~---~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~------~~~~~~~~~l~~~~  203 (235)
T COG0666         138 DVNNLR-DEDGNTPLHWAALNGD---ADIVELLLEAGADPNSRNSYGVTALDPAAK------NGRIELVKLLLDKG  203 (235)
T ss_pred             CCcccc-CCCCCchhHHHHHcCc---hHHHHHHHhcCCCCcccccCCCcchhhhcc------cchHHHHHHHHhcC
Confidence             55555 9999999999999999   899999999999999999999999999986      89999999999977

>PHA02792 ankyrin-like protein; Provisional

Probab=99.41  E-value=1.3e-12  Score=148.90  Aligned_cols=137  Identities=14%  Similarity=0.125  Sum_probs=112.4

Q ss_pred             HHHHHHhC--CHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccCCC
Q 006236           20 LLELSASD--DISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSD   97 (655)
Q Consensus        20 LL~AAa~g--d~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~~   97 (655)
                      |+.....+  +.+ +.++|.++|++++.               ..+...++.||..|+.+++++|+++| ||+|.+ |.+
T Consensus       310 l~~Yl~~~~v~ie-iIK~LId~Ga~~~r---------------~~~~n~~~~Aa~~gn~eIVelLIs~G-ADIN~k-D~~  371 (631)
T PHA02792        310 LSEYVSYHTVYIN-VIKCMIDEGATLYR---------------FKHINKYFQKFDNRDPKVVEYILKNG-NVVVED-DDN  371 (631)
T ss_pred             HHHHHhcCCccHH-HHHHHHHCCCcccc---------------CCcchHHHHHHHcCCHHHHHHHHHcC-Cchhhh-cCC
Confidence            44455555  333 44555558998752               23567899999999999999999999 999988 666


Q ss_pred             --CChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccCCC
Q 006236           98 --GFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNI  175 (655)
Q Consensus        98 --G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~t  175 (655)
                        +.||||+|+........+++++|+++|||+|.+|..|.||||+|+.      .++.+++++|+++|++++.+|..|.+
T Consensus       372 g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~------~~n~eivelLLs~GADIN~kD~~G~T  445 (631)
T PHA02792        372 IINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIE------SHSVSLVEWLIDNGADINITTKYGST  445 (631)
T ss_pred             CCChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcchHHHHHH------cCCHHHHHHHHHCCCCCCCcCCCCCC
Confidence              4699999887766333457899999999999999999999999987      88999999999999999999999999


Q ss_pred             Ccccc
Q 006236          176 PVPQL  180 (655)
Q Consensus       176 pl~~l  180 (655)
                      ++..+
T Consensus       446 pL~~A  450 (631)
T PHA02792        446 CIGIC  450 (631)
T ss_pred             HHHHH
Confidence            98654

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.41  E-value=5e-13  Score=146.08  Aligned_cols=141  Identities=20%  Similarity=0.359  Sum_probs=122.1

Q ss_pred             CchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccC
Q 006236           16 KSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACG   95 (655)
Q Consensus        16 g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d   95 (655)
                      ..-.++.|...++.+.+..+|- .|+++|..+             .+|.|+||-+|...+.+||++|+++| ++||.. |
T Consensus        40 ~sa~~l~A~~~~d~~ev~~ll~-~ga~~~~~n-------------~DglTalhq~~id~~~e~v~~l~e~g-a~Vn~~-d  103 (527)
T KOG0505|consen   40 DSAVFLEACSRGDLEEVRKLLN-RGASPNLCN-------------VDGLTALHQACIDDNLEMVKFLVENG-ANVNAQ-D  103 (527)
T ss_pred             chHHHHhccccccHHHHHHHhc-cCCCccccC-------------CccchhHHHHHhcccHHHHHHHHHhc-CCcccc-c
Confidence            3456778888899999998886 788888875             89999999999999999999999999 999998 9


Q ss_pred             CCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCC-----------------------------------------
Q 006236           96 SDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYG-----------------------------------------  134 (655)
Q Consensus        96 ~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G-----------------------------------------  134 (655)
                      ..||||||.|+..|+   +.++++|+.+||++-..+.+|                                         
T Consensus       104 ~e~wtPlhaaascg~---~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D  180 (527)
T KOG0505|consen  104 NEGWTPLHAAASCGY---LNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDD  180 (527)
T ss_pred             cccCCcchhhccccc---HHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHH
Confidence            999999999999999   999999999988655544444                                         


Q ss_pred             ------------------CCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccCCCCccccc
Q 006236          135 ------------------NKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLS  181 (655)
Q Consensus       135 ------------------~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~tpl~~l~  181 (655)
                                        .|.||+|+.      .|..++.++||++|.+++++|.+|.+|++.++
T Consensus       181 ~~q~l~~G~~~d~~~~rG~T~lHvAaa------~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA  239 (527)
T KOG0505|consen  181 ARQWLNAGAELDARHARGATALHVAAA------NGYTEVAALLLQAGYSVNIKDYDGWTPLHAAA  239 (527)
T ss_pred             HHHHHhccccccccccccchHHHHHHh------hhHHHHHHHHHHhccCcccccccCCCcccHHH
Confidence                              456666554      88999999999999999999999999996544

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.41  E-value=9.2e-13  Score=157.26  Aligned_cols=119  Identities=20%  Similarity=0.214  Sum_probs=105.2

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccc
Q 006236           60 GFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVD  139 (655)
Q Consensus        60 d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLh  139 (655)
                      +.++.++||.||..|+.++++.|++.| +|+|.. |..|+||||+|+..|+   .+++++|+++|+|+|.+|.+|+||||
T Consensus       522 ~~~~~~~L~~Aa~~g~~~~l~~Ll~~G-~d~n~~-d~~G~TpLh~Aa~~g~---~~~v~~Ll~~gadin~~d~~G~TpL~  596 (823)
T PLN03192        522 DPNMASNLLTVASTGNAALLEELLKAK-LDPDIG-DSKGRTPLHIAASKGY---EDCVLVLLKHACNVHIRDANGNTALW  596 (823)
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHCC-CCCCCC-CCCCCCHHHHHHHcCh---HHHHHHHHhcCCCCCCcCCCCCCHHH
Confidence            345679999999999999999999999 999998 9999999999999999   99999999999999999999999999


Q ss_pred             hhhhc-------------------------cCCCCcChHHHHHHHHhCCCCCCcccccCCCCccccccc
Q 006236          140 LIPVA-------------------------MKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLSKD  183 (655)
Q Consensus       140 lAa~~-------------------------~~~~~~g~~eivelLL~~GAdin~~d~~g~tpl~~l~~~  183 (655)
                      +|+..                         +.++..++.+++++|+++|++++..|.+|.||+..+...
T Consensus       597 ~A~~~g~~~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~  665 (823)
T PLN03192        597 NAISAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAE  665 (823)
T ss_pred             HHHHhCCHHHHHHHHhcCcccCcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
Confidence            87651                         122346778889999999999999999999999765544

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.41  E-value=3.5e-13  Score=151.62  Aligned_cols=155  Identities=19%  Similarity=0.230  Sum_probs=135.5

Q ss_pred             chHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccCC
Q 006236           17 SSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGS   96 (655)
Q Consensus        17 ~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~   96 (655)
                      .+-|+.|...+|++.+..+|...+.. ...-+...+....+..|..|.|+||.|+++|+.+++++|+++. +-++.. +.
T Consensus         4 ~qel~~a~ka~d~~tva~ll~~~~~r-~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~e-a~ldl~-d~   80 (854)
T KOG0507|consen    4 KQELIDACKAGDYDTVALLLSSKKGR-SGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYE-ALLDLC-DT   80 (854)
T ss_pred             hhhHHHhhhcccHHHHHHhccCCCCC-CCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcch-hhhhhh-hc
Confidence            35688999999999999999865552 1111333455666777899999999999999999999999998 888887 89


Q ss_pred             CCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccCCCC
Q 006236           97 DGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIP  176 (655)
Q Consensus        97 ~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~tp  176 (655)
                      .|.+|||+|++.|+   .++||+||.++..+|+.+..|.||||.|+.      .++.+++.+||++|+|.-+.++.+.++
T Consensus        81 kg~~plhlaaw~g~---~e~vkmll~q~d~~na~~~e~~tplhlaaq------hgh~dvv~~Ll~~~adp~i~nns~~t~  151 (854)
T KOG0507|consen   81 KGILPLHLAAWNGN---LEIVKMLLLQTDILNAVNIENETPLHLAAQ------HGHLEVVFYLLKKNADPFIRNNSKETV  151 (854)
T ss_pred             cCcceEEehhhcCc---chHHHHHHhcccCCCcccccCcCccchhhh------hcchHHHHHHHhcCCCccccCcccccH
Confidence            99999999999999   999999999999999999999999999997      999999999999999999999999998


Q ss_pred             ccccccc
Q 006236          177 VPQLSKD  183 (655)
Q Consensus       177 l~~l~~~  183 (655)
                      +++....
T Consensus       152 ldlA~qf  158 (854)
T KOG0507|consen  152 LDLASRF  158 (854)
T ss_pred             HHHHHHh
Confidence            8766554

>PHA02792 ankyrin-like protein; Provisional

Probab=99.40  E-value=1.4e-12  Score=148.44  Aligned_cols=134  Identities=16%  Similarity=0.177  Sum_probs=109.6

Q ss_pred             CchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCC--CChHHHHHHHcCCH---HHHHHHHHcCCCcc
Q 006236           16 KSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFE--ERTPIMIAAMFGSV---AVLKYVIETGKVNV   90 (655)
Q Consensus        16 g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~--G~TPLh~AA~~G~~---evvk~LL~~G~aDv   90 (655)
                      ....++.||..++.+.++.|+. +|+++|..+             ..  +.||||+|+.....   +++++|+++| +|+
T Consensus       339 ~~n~~~~Aa~~gn~eIVelLIs-~GADIN~kD-------------~~g~~~TpLh~A~~n~~~~v~~IlklLIs~G-ADI  403 (631)
T PHA02792        339 HINKYFQKFDNRDPKVVEYILK-NGNVVVEDD-------------DNIINIMPLFPTLSIHESDVLSILKLCKPYI-DDI  403 (631)
T ss_pred             cchHHHHHHHcCCHHHHHHHHH-cCCchhhhc-------------CCCCChhHHHHHHHhccHhHHHHHHHHHhcC-Ccc
Confidence            4567888888888887766665 899999875             44  57999998877664   4588999999 999


Q ss_pred             ccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCC----CcChHHHHHHHHhCCCCC
Q 006236           91 NRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSP----LHSRKRAIELLLKGDHTI  166 (655)
Q Consensus        91 N~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~----~~g~~eivelLL~~GAdi  166 (655)
                      |.+ |..|.||||+|+..++   .+++++|+++|+++|.+|..|.||||+|+.....+    .....+++++||++|.++
T Consensus       404 N~k-D~~G~TPLh~Aa~~~n---~eivelLLs~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~i  479 (631)
T PHA02792        404 NKI-DKHGRSILYYCIESHS---VSLVEWLIDNGADINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLPTI  479 (631)
T ss_pred             ccc-cccCcchHHHHHHcCC---HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCCh
Confidence            998 9999999999999999   99999999999999999999999999986411110    123357899999999887


Q ss_pred             Cc
Q 006236          167 FE  168 (655)
Q Consensus       167 n~  168 (655)
                      ..
T Consensus       480 ~~  481 (631)
T PHA02792        480 EC  481 (631)
T ss_pred             hH
Confidence            63

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.38  E-value=2.7e-12  Score=113.90  Aligned_cols=108  Identities=36%  Similarity=0.528  Sum_probs=99.5

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccc
Q 006236           60 GFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVD  139 (655)
Q Consensus        60 d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLh  139 (655)
                      +.+|.||||+|+..++.+++++|++.+ .+++.. +..|.||||+|+..+.   .+++++|++.|++++..+..|.||+|
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~~-~~~~~~-~~~g~~~l~~a~~~~~---~~~~~~ll~~~~~~~~~~~~~~~~l~   78 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLENG-ADVNAK-DNDGRTPLHLAAKNGH---LEIVKLLLEKGADVNARDKDGNTPLH   78 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHcC-CCCCcc-CCCCCcHHHHHHHcCC---HHHHHHHHHcCCCccccCCCCCCHHH
Confidence            477999999999999999999999999 887777 8999999999999999   99999999999999999999999999


Q ss_pred             hhhhccCCCCcChHHHHHHHHhCCCCCCcccccCCCCcc
Q 006236          140 LIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVP  178 (655)
Q Consensus       140 lAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~tpl~  178 (655)
                      +|+.      .++.+++++|+++|.+++..+..+.+++.
T Consensus        79 ~a~~------~~~~~~~~~L~~~~~~~~~~~~~~~~~l~  111 (126)
T cd00204          79 LAAR------NGNLDVVKLLLKHGADVNARDKDGRTPLH  111 (126)
T ss_pred             HHHH------cCcHHHHHHHHHcCCCCcccCCCCCCHHH
Confidence            9987      78899999999999988888877777663

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.36  E-value=1.6e-12  Score=124.37  Aligned_cols=109  Identities=17%  Similarity=0.180  Sum_probs=97.5

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhh
Q 006236           64 RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPV  143 (655)
Q Consensus        64 ~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~  143 (655)
                      .--+.+|+..+.+..|+.||+...--+|.+ |.+|.||||-|+++|+   .+||+.||..||+++++...|+||||-|++
T Consensus        64 ~rl~lwaae~nrl~eV~~lL~e~an~vNtr-D~D~YTpLHRAaYn~h---~div~~ll~~gAn~~a~T~~GWTPLhSAck  139 (228)
T KOG0512|consen   64 IRLLLWAAEKNRLTEVQRLLSEKANHVNTR-DEDEYTPLHRAAYNGH---LDIVHELLLSGANKEAKTNEGWTPLHSACK  139 (228)
T ss_pred             HHHHHHHHhhccHHHHHHHHHhcccccccc-ccccccHHHHHHhcCc---hHHHHHHHHccCCcccccccCccchhhhhc
Confidence            345789999999999999999883357888 9999999999999999   999999999999999999999999999976


Q ss_pred             ccCCCCcChHHHHHHHHhCCCCCCcccccCCCCcccccc
Q 006236          144 AMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLSK  182 (655)
Q Consensus       144 ~~~~~~~g~~eivelLL~~GAdin~~d~~g~tpl~~l~~  182 (655)
                            -++.+++-+||++|+|||.......+|++....
T Consensus       140 ------WnN~~va~~LLqhgaDVnA~t~g~ltpLhlaa~  172 (228)
T KOG0512|consen  140 ------WNNFEVAGRLLQHGADVNAQTKGLLTPLHLAAG  172 (228)
T ss_pred             ------ccchhHHHHHHhccCcccccccccchhhHHhhc
Confidence                  899999999999999999887777777765543

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.35  E-value=1.2e-12  Score=148.87  Aligned_cols=151  Identities=19%  Similarity=0.184  Sum_probs=121.9

Q ss_pred             CCchHHHHHHH--hCCH-HHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccc
Q 006236           15 NKSSILLELSA--SDDI-SAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVN   91 (655)
Q Consensus        15 ~g~s~LL~AAa--~gd~-~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN   91 (655)
                      -|.|.||.+.-  .++. +.+..+|+-...-||..-         .....+|.||||+|+.+.+.++|++||+.| |||+
T Consensus       142 ~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~---------~~eeY~GqSaLHiAIv~~~~~~V~lLl~~g-ADV~  211 (782)
T KOG3676|consen  142 TGETLLHKALLNLSDGHNELARVLLEIFPKLINDIY---------TSEEYYGQSALHIAIVNRDAELVRLLLAAG-ADVH  211 (782)
T ss_pred             hhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhh---------hhHhhcCcchHHHHHHhccHHHHHHHHHcC-Cchh
Confidence            36788888777  4455 344455543333355431         112478999999999999999999999999 9999


Q ss_pred             ccc----------------------CCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCC
Q 006236           92 RAC----------------------GSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPL  149 (655)
Q Consensus        92 ~~~----------------------d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~  149 (655)
                      .++                      -+.|..||-+||..++   .||+++|+++|||++++|.+|+|.||..+.      
T Consensus       212 aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq---~eivrlLl~~gAd~~aqDS~GNTVLH~lVi------  282 (782)
T KOG3676|consen  212 ARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQ---PEIVRLLLAHGADPNAQDSNGNTVLHMLVI------  282 (782)
T ss_pred             hHhhccccCcccccccccccCCcceeeeccCchHHHHHcCC---HHHHHHHHhcCCCCCccccCCChHHHHHHH------
Confidence            653                      1347889999999999   999999999999999999999999999986      


Q ss_pred             cChHHHHHHHHhCCCC--CCcccccCCCCcccccccC
Q 006236          150 HSRKRAIELLLKGDHT--IFEEEELVNIPVPQLSKDG  184 (655)
Q Consensus       150 ~g~~eivelLL~~GAd--in~~d~~g~tpl~~l~~~~  184 (655)
                      ....++..++|++|++  ..+.|.+|-||+-.+++.+
T Consensus       283 ~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklG  319 (782)
T KOG3676|consen  283 HFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLG  319 (782)
T ss_pred             HHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhh
Confidence            6788999999999999  8889999999997666543

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.33  E-value=1.9e-12  Score=112.33  Aligned_cols=101  Identities=22%  Similarity=0.298  Sum_probs=92.6

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhc
Q 006236           65 TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVA  144 (655)
Q Consensus        65 TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~  144 (655)
                      --++|++++|.++-|+..+..| .|||..  ..|+||||||+-+|+   .+++++|+..||+++.+|+.|-|||.-|+. 
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g-~nVn~~--~ggR~plhyAAD~GQ---l~ilefli~iGA~i~~kDKygITPLLsAvw-   76 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEG-LNVNEI--YGGRTPLHYAADYGQ---LSILEFLISIGANIQDKDKYGITPLLSAVW-   76 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHcc-ccHHHH--hCCcccchHhhhcch---HHHHHHHHHhccccCCccccCCcHHHHHHH-
Confidence            3478999999999999999999 999976  699999999999999   999999999999999999999999999987 


Q ss_pred             cCCCCcChHHHHHHHHhCCCCCCcccccCCCCc
Q 006236          145 MKSPLHSRKRAIELLLKGDHTIFEEEELVNIPV  177 (655)
Q Consensus       145 ~~~~~~g~~eivelLL~~GAdin~~d~~g~tpl  177 (655)
                           .|+.+||++||++||+-.+...+|.+.+
T Consensus        77 -----EGH~~cVklLL~~GAdrt~~~PdG~~~~  104 (117)
T KOG4214|consen   77 -----EGHRDCVKLLLQNGADRTIHAPDGTALI  104 (117)
T ss_pred             -----HhhHHHHHHHHHcCcccceeCCCchhHH
Confidence                 9999999999999999998766665544

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.31  E-value=6.1e-12  Score=143.35  Aligned_cols=138  Identities=22%  Similarity=0.266  Sum_probs=118.8

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCC---ccccccc-CCccC------CCCCChHHHHHHHcCCHHHHHHHH
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPS---FWYGRRI-GSKKM------GFEERTPIMIAAMFGSVAVLKYVI   83 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~d---lw~g~~~-~~~~~------d~~G~TPLh~AA~~G~~evvk~LL   83 (655)
                      +.|.|+||.|+.+.|.+.|..||+ .|+||+++.   |+...+. .+++.      -+.|..||-+||..++.+++++|+
T Consensus       182 Y~GqSaLHiAIv~~~~~~V~lLl~-~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl  260 (782)
T KOG3676|consen  182 YYGQSALHIAIVNRDAELVRLLLA-AGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLL  260 (782)
T ss_pred             hcCcchHHHHHHhccHHHHHHHHH-cCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHH
Confidence            679999999999999998887776 999999975   2211111 12111      245899999999999999999999


Q ss_pred             HcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCC--CcccCCCCCCccchhhhccCCCCcChHHHHHHHHh
Q 006236           84 ETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASAD--VNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLK  161 (655)
Q Consensus        84 ~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAD--vn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~  161 (655)
                      ++| ||+|.+ |..|+|.||..+..-.   .++-+++|++|++  ...+|..|.|||-+|++      .|+++|.+.+++
T Consensus       261 ~~g-Ad~~aq-DS~GNTVLH~lVi~~~---~~My~~~L~~ga~~l~~v~N~qgLTPLtLAak------lGk~emf~~ile  329 (782)
T KOG3676|consen  261 AHG-ADPNAQ-DSNGNTVLHMLVIHFV---TEMYDLALELGANALEHVRNNQGLTPLTLAAK------LGKKEMFQHILE  329 (782)
T ss_pred             hcC-CCCCcc-ccCCChHHHHHHHHHH---HHHHHHHHhcCCCccccccccCCCChHHHHHH------hhhHHHHHHHHH
Confidence            999 999999 9999999999999866   8999999999999  88999999999999997      999999999998


Q ss_pred             CC
Q 006236          162 GD  163 (655)
Q Consensus       162 ~G  163 (655)
                      ..
T Consensus       330 ~~  331 (782)
T KOG3676|consen  330 RR  331 (782)
T ss_pred             hh
Confidence            73

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.31  E-value=5.2e-12  Score=137.08  Aligned_cols=122  Identities=25%  Similarity=0.326  Sum_probs=102.6

Q ss_pred             chHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccCC
Q 006236           17 SSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGS   96 (655)
Q Consensus        17 ~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~   96 (655)
                      .-.||.||..|.++.|.+.+. .=-|+...             +.+|.|+||-|+..||.+||++||+.| +|||.. |.
T Consensus       551 LaLLLDaaLeGEldlVq~~i~-ev~DpSqp-------------NdEGITaLHNAiCaghyeIVkFLi~~g-anVNa~-DS  614 (752)
T KOG0515|consen  551 LALLLDAALEGELDLVQRIIY-EVTDPSQP-------------NDEGITALHNAICAGHYEIVKFLIEFG-ANVNAA-DS  614 (752)
T ss_pred             HHHHHhhhhcchHHHHHHHHH-hhcCCCCC-------------CccchhHHhhhhhcchhHHHHHHHhcC-CcccCc-cC
Confidence            345678888999999988886 33455555             489999999999999999999999999 999999 99


Q ss_pred             CCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccC-CCCCCccchhhhccCCCCcChHHHHHHHHh
Q 006236           97 DGFTALHCAVAGGANSSFEVVKLLLSASADVNCVD-VYGNKPVDLIPVAMKSPLHSRKRAIELLLK  161 (655)
Q Consensus        97 ~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D-~~G~TPLhlAa~~~~~~~~g~~eivelLL~  161 (655)
                      +||||||||+.+++   +.+++.|++.|+-|-+.. .++.||..-+-    ....|...|.++|..
T Consensus       615 dGWTPLHCAASCNn---v~~ckqLVe~GaavfAsTlSDmeTa~eKCe----e~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  615 DGWTPLHCAASCNN---VPMCKQLVESGAAVFASTLSDMETAAEKCE----EMEEGYDQCSQYLYG  673 (752)
T ss_pred             CCCchhhhhhhcCc---hHHHHHHHhccceEEeeecccccchhhhcc----hhhhhHHHHHHHHHH
Confidence            99999999999999   999999999998876544 47788877653    356788899999975

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.27  E-value=1.5e-11  Score=143.67  Aligned_cols=102  Identities=25%  Similarity=0.317  Sum_probs=95.2

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhc
Q 006236           65 TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVA  144 (655)
Q Consensus        65 TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~  144 (655)
                      +.||.|+..|+.+++++|++.| +|+|.. |..|.||||+|+..|+   .+++++|+++|+|+|.+|.+|.||||+|+. 
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~G-adin~~-d~~G~TpLh~Aa~~g~---~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~-  157 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGG-ADPNCR-DYDGRTPLHIACANGH---VQVVRVLLEFGADPTLLDKDGKTPLELAEE-  157 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCC-CCCCCc-CCCCCcHHHHHHHCCC---HHHHHHHHHCCCCCCCCCCCCCCHHHHHHH-
Confidence            4588999999999999999999 999998 9999999999999999   999999999999999999999999999997 


Q ss_pred             cCCCCcChHHHHHHHHhC-------CCCCCcccccCCCCc
Q 006236          145 MKSPLHSRKRAIELLLKG-------DHTIFEEEELVNIPV  177 (655)
Q Consensus       145 ~~~~~~g~~eivelLL~~-------GAdin~~d~~g~tpl  177 (655)
                           .++.+++++|+.+       |++++..+..|.+++
T Consensus       158 -----~g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~  192 (664)
T PTZ00322        158 -----NGFREVVQLLSRHSQCHFELGANAKPDSFTGKPPS  192 (664)
T ss_pred             -----CCcHHHHHHHHhCCCcccccCCCCCccccCCCCcc
Confidence                 8999999999999       888888777777665

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.27  E-value=1.6e-11  Score=125.51  Aligned_cols=124  Identities=21%  Similarity=0.256  Sum_probs=110.7

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA   93 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~   93 (655)
                      .+-.++|+++...||.+.+..||.. --.+|..             |..|+++|+.|+..|+.++|++||+.| +|||..
T Consensus        10 d~~~~~Lle~i~Kndt~~a~~LLs~-vr~vn~~-------------D~sGMs~LahAaykGnl~~v~lll~~g-aDvN~~   74 (396)
T KOG1710|consen   10 DAPKSPLLEAIDKNDTEAALALLST-VRQVNQR-------------DPSGMSVLAHAAYKGNLTLVELLLELG-ADVNDK   74 (396)
T ss_pred             cchhhHHHHHHccCcHHHHHHHHHH-hhhhhcc-------------CCCcccHHHHHHhcCcHHHHHHHHHhC-CCcCcc
Confidence            3446899999999999999999963 2337776             589999999999999999999999999 999987


Q ss_pred             cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHh
Q 006236           94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLK  161 (655)
Q Consensus        94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~  161 (655)
                      .+..+.||||+|+..|+   .++.++||+.|+.+...+.-|+|+-.+|+-      -|+.++|..+-.
T Consensus        75 qhg~~YTpLmFAALSGn---~dvcrllldaGa~~~~vNsvgrTAaqmAAF------VG~H~CV~iINN  133 (396)
T KOG1710|consen   75 QHGTLYTPLMFAALSGN---QDVCRLLLDAGARMYLVNSVGRTAAQMAAF------VGHHECVAIINN  133 (396)
T ss_pred             cccccccHHHHHHHcCC---chHHHHHHhccCccccccchhhhHHHHHHH------hcchHHHHHHhc
Confidence            67889999999999999   999999999999999999999999999885      788888877643

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.25  E-value=2.9e-11  Score=141.22  Aligned_cols=107  Identities=29%  Similarity=0.320  Sum_probs=96.9

Q ss_pred             hHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccCCC
Q 006236           18 SILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSD   97 (655)
Q Consensus        18 s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~~   97 (655)
                      ..|+++|..|+.+.++.||. .|+++|..+             ..|+||||+||..|+.+++++||+.| +|+|.. |..
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~-~Gadin~~d-------------~~G~TpLh~Aa~~g~~eiv~~LL~~G-advn~~-d~~  147 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLT-GGADPNCRD-------------YDGRTPLHIACANGHVQVVRVLLEFG-ADPTLL-DKD  147 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHH-CCCCCCCcC-------------CCCCcHHHHHHHCCCHHHHHHHHHCC-CCCCCC-CCC
Confidence            35888999999998777765 899999884             89999999999999999999999999 999998 999


Q ss_pred             CChHHHHHHHcCCCChHHHHHHHHhC-------CCCCcccCCCCCCccchhhh
Q 006236           98 GFTALHCAVAGGANSSFEVVKLLLSA-------SADVNCVDVYGNKPVDLIPV  143 (655)
Q Consensus        98 G~TpLH~Aa~~G~~~~~eiVklLL~~-------GADvn~~D~~G~TPLhlAa~  143 (655)
                      |.||||+|+..|+   .+++++|+++       |++++..+..|.+|+..+..
T Consensus       148 G~TpLh~A~~~g~---~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~~  197 (664)
T PTZ00322        148 GKTPLELAEENGF---REVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDSP  197 (664)
T ss_pred             CCCHHHHHHHCCc---HHHHHHHHhCCCcccccCCCCCccccCCCCccchhhh
Confidence            9999999999999   9999999998       89999999988888776553

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.18  E-value=4.7e-11  Score=94.13  Aligned_cols=54  Identities=39%  Similarity=0.662  Sum_probs=46.5

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHH
Q 006236           63 ERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLL  121 (655)
Q Consensus        63 G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL  121 (655)
                      |+||||+||..|+.+++++|++.| +|+|.. |.+|.||||+|+..|+   .+++++||
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~-~din~~-d~~g~t~lh~A~~~g~---~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHG-ADINAQ-DEDGRTPLHYAAKNGN---IDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTT-SGTT-B--TTS--HHHHHHHTT----HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCC-CCCCCC-CCCCCCHHHHHHHccC---HHHHHHHC
Confidence            789999999999999999999999 999999 9999999999999999   99999996

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.18  E-value=1.4e-11  Score=98.23  Aligned_cols=56  Identities=39%  Similarity=0.513  Sum_probs=31.2

Q ss_pred             HHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchh
Q 006236           82 VIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLI  141 (655)
Q Consensus        82 LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlA  141 (655)
                      ||+++.+++|.. |..|.||||+|+..|+   .++|++||+.|+|++.+|..|+||||+|
T Consensus         1 LL~~~~~~~n~~-d~~G~T~LH~A~~~g~---~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQ-DKYGNTPLHWAARYGH---SEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT----TTS--HHHHHHHHT----HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCc-CCCCCcHHHHHHHcCc---HHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            566666788888 8889999999999888   8999999988999999999999998886

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.16  E-value=1.7e-10  Score=112.36  Aligned_cols=115  Identities=30%  Similarity=0.395  Sum_probs=102.9

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCC--CChHHHHHHHHhCCC---CCcccCCCC
Q 006236           60 GFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGA--NSSFEVVKLLLSASA---DVNCVDVYG  134 (655)
Q Consensus        60 d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~--~~~~eiVklLL~~GA---Dvn~~D~~G  134 (655)
                      +..+.+++|.++..+..+++++|+..+ ++++.. +..|.||||+|+..++  ....+++++||+.|+   +.+..|..|
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~-~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g  147 (235)
T COG0666          70 DLDGRLPLHSAASKGDDKIVKLLLASG-ADVNAK-DADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDG  147 (235)
T ss_pred             CccccCHHHHHHHcCcHHHHHHHHHcC-CCcccc-cCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCC
Confidence            566899999999999999999999999 999888 9999999999999986  223799999999999   667779999


Q ss_pred             CCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccCCCCcccccc
Q 006236          135 NKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLSK  182 (655)
Q Consensus       135 ~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~tpl~~l~~  182 (655)
                      +||||+|+.      .+..+++++|++.|++++.++..|.+++.....
T Consensus       148 ~tpl~~A~~------~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~  189 (235)
T COG0666         148 NTPLHWAAL------NGDADIVELLLEAGADPNSRNSYGVTALDPAAK  189 (235)
T ss_pred             CchhHHHHH------cCchHHHHHHHhcCCCCcccccCCCcchhhhcc
Confidence            999999987      888899999999999999998889888755443

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.15  E-value=6.5e-11  Score=128.72  Aligned_cols=91  Identities=25%  Similarity=0.437  Sum_probs=85.1

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccC
Q 006236           67 IMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMK  146 (655)
Q Consensus        67 Lh~AA~~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~  146 (655)
                      |.-|+..|-+++|..++..- -|+... +..|.|+||.|+..||   .+||++||++|+++|..|.+||||||+|+.   
T Consensus       554 LLDaaLeGEldlVq~~i~ev-~DpSqp-NdEGITaLHNAiCagh---yeIVkFLi~~ganVNa~DSdGWTPLHCAAS---  625 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEV-TDPSQP-NDEGITALHNAICAGH---YEIVKFLIEFGANVNAADSDGWTPLHCAAS---  625 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhh-cCCCCC-CccchhHHhhhhhcch---hHHHHHHHhcCCcccCccCCCCchhhhhhh---
Confidence            45688999999999999887 789888 8999999999999999   999999999999999999999999999997   


Q ss_pred             CCCcChHHHHHHHHhCCCCCCc
Q 006236          147 SPLHSRKRAIELLLKGDHTIFE  168 (655)
Q Consensus       147 ~~~~g~~eivelLL~~GAdin~  168 (655)
                         .++..+++.|++.|+-|..
T Consensus       626 ---CNnv~~ckqLVe~GaavfA  644 (752)
T KOG0515|consen  626 ---CNNVPMCKQLVESGAAVFA  644 (752)
T ss_pred             ---cCchHHHHHHHhccceEEe
Confidence               8999999999999998864

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.09  E-value=9.7e-11  Score=93.42  Aligned_cols=53  Identities=34%  Similarity=0.528  Sum_probs=32.9

Q ss_pred             hcC-CCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCChHHHHH
Q 006236           38 EKG-FDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCA  105 (655)
Q Consensus        38 ~~G-adIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~A  105 (655)
                      ++| .++|..             |..|.||||+||.+|+.+++++||+.| +|++.+ |..|+||||+|
T Consensus         3 ~~~~~~~n~~-------------d~~G~T~LH~A~~~g~~~~v~~Ll~~g-~d~~~~-d~~G~Tpl~~A   56 (56)
T PF13857_consen    3 EHGPADVNAQ-------------DKYGNTPLHWAARYGHSEVVRLLLQNG-ADPNAK-DKDGQTPLHYA   56 (56)
T ss_dssp             ---T--TT----------------TTS--HHHHHHHHT-HHHHHHHHHCT---TT----TTS--HHHH-
T ss_pred             ccCcCCCcCc-------------CCCCCcHHHHHHHcCcHHHHHHHHHCc-CCCCCC-cCCCCCHHHhC
Confidence            355 777777             599999999999999999999999888 999999 99999999997

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.07  E-value=1.8e-10  Score=90.77  Aligned_cols=54  Identities=37%  Similarity=0.565  Sum_probs=46.2

Q ss_pred             CChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHH
Q 006236           98 GFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLL  160 (655)
Q Consensus        98 G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL  160 (655)
                      |+|+||+|+..|+   .+++++|++.|+|+|.+|.+|.||||+|+.      .++.+++++||
T Consensus         1 g~t~lh~A~~~g~---~~~~~~Ll~~~~din~~d~~g~t~lh~A~~------~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGN---LEIVKLLLEHGADINAQDEDGRTPLHYAAK------NGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT----HHHHHHHHHTTSGTT-B-TTS--HHHHHHH------TT-HHHHHHHH
T ss_pred             CChHHHHHHHhCC---HHHHHHHHHCCCCCCCCCCCCCCHHHHHHH------ccCHHHHHHHC
Confidence            6899999999999   999999999999999999999999999997      89999999996

...

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.03  E-value=1.6e-10  Score=133.57  Aligned_cols=130  Identities=21%  Similarity=0.263  Sum_probs=118.2

Q ss_pred             chHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccCC
Q 006236           17 SSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGS   96 (655)
Q Consensus        17 ~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~   96 (655)
                      ..+-|-.|+.|++..++++|+..|++|..++             ..|.+||.+|+..|++.+|..||++. ++|....|.
T Consensus       757 ~~t~LT~acaggh~e~vellv~rganiehrd-------------kkgf~plImaatagh~tvV~~llk~h-a~veaQsdr  822 (2131)
T KOG4369|consen  757 IKTNLTSACAGGHREEVELLVVRGANIEHRD-------------KKGFVPLIMAATAGHITVVQDLLKAH-ADVEAQSDR  822 (2131)
T ss_pred             ccccccccccCccHHHHHHHHHhcccccccc-------------cccchhhhhhcccCchHHHHHHHhhh-hhhhhhccc
Confidence            3455667888888888888888999999884             99999999999999999999999999 999998899


Q ss_pred             CCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcc
Q 006236           97 DGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEE  169 (655)
Q Consensus        97 ~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~  169 (655)
                      .+.|+|.+||.+|.   .++|++||.+|++-..++....|||.+|..      .+..+||++||.+|+.||.+
T Consensus       823 tkdt~lSlacsggr---~~vvelLl~~gankehrnvsDytPlsla~S------ggy~~iI~~llS~GseInSr  886 (2131)
T KOG4369|consen  823 TKDTMLSLACSGGR---TRVVELLLNAGANKEHRNVSDYTPLSLARS------GGYTKIIHALLSSGSEINSR  886 (2131)
T ss_pred             ccCceEEEecCCCc---chHHHHHHHhhccccccchhhcCchhhhcC------cchHHHHHHHhhcccccccc
Confidence            99999999999999   999999999999999999999999999976      88999999999999888854

>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=98.94  E-value=2.5e-09  Score=117.74  Aligned_cols=190  Identities=15%  Similarity=0.115  Sum_probs=117.6

Q ss_pred             CCCChHHHHHHHcCCCChHHHHHHHHhCC-CCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccCC
Q 006236           96 SDGFTALHCAVAGGANSSFEVVKLLLSAS-ADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVN  174 (655)
Q Consensus        96 ~~G~TpLH~Aa~~G~~~~~eiVklLL~~G-ADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~  174 (655)
                      .+-+|+|++|+..|.   .+++.+++..+ .++|-.--+|..  |+++.   ....+..+.+..|+.+++..++.|..|.
T Consensus        56 ~~qR~~~~v~~~~Gs---~~~~~~i~~~~~~e~~~~C~~~~~--~C~~~---g~s~~~~e~~~hL~~~k~~~~~tda~g~  127 (528)
T KOG1595|consen   56 LNQRRRRPVARRDGS---FNYSPDIYCTKYDEVTGICPDGDE--HCAVL---GRSVGDTERTYHLRYYKTLPCVTDARGN  127 (528)
T ss_pred             hccccccchhhhcCc---cccccceeecchhhccccCCCCcc--cchhc---ccccCCcceeEeccccccccCccccCCC
Confidence            456899999999999   99999998765 777776666666  55542   2335778888999999999999998888


Q ss_pred             CCccccccc---CcccccccccCCcccccCC---cccc---ccccccccccccccccccCCCCCccccCCCCCCCCCCCC
Q 006236          175 IPVPQLSKD---GTEKKEYPIDVSLPDINNG---VYGT---DDFRMYAFKIKPCSRAYSHDWTECPFVHPGENARRRDPR  245 (655)
Q Consensus       175 tpl~~l~~~---~~~~keypvdlsl~di~~~---~y~s---de~rm~sfKvrpCsrayshDwteCp~~Hp~EnarRRdPr  245 (655)
                      .+.+.+...   +.....-+++    ++...   -+..   .+-....+++.-+...-.++..  .+|...+      -|
T Consensus       128 ~~~~v~~~~~~~~~~~~r~~~~----~l~e~~~~~~~~~~e~~~~~~~~~~~y~~Dp~~pdi~--~~ys~De------Fr  195 (528)
T KOG1595|consen  128 CVKNVLHCAFAHGPNDLRPPVE----DLLELQGGSGLPDDEPEVESKLDVTEYPEDPSWPDIN--GIYSSDE------FR  195 (528)
T ss_pred             cccCcccccccCCccccccHHH----HHHhcccccCccCCCcccccccccccccCCCCccccc--ccccccc------eE
Confidence            876554311   1111111111    11111   0100   0000111111111111112211  1222222      27


Q ss_pred             CCCCCcCCCCCccCCCCCCCCcccccC-CccccccCCcc--cccccccCC--CCCCCCC-CCCCCCCCC
Q 006236          246 KYPYTCVPCPEFRKGACPKGDGCEYAH-GVFESWLHPAQ--YRTRLCKDE--IGCARKV-CFFAHKPEE  308 (655)
Q Consensus       246 ~y~Ys~~~CP~~rkg~C~~Gd~C~yaH-~~~E~~~HP~~--ykt~~C~~~--~~C~~~~-C~faH~~~e  308 (655)
                      .|.|+...|+.-   .|.++..|.|+| |.-...-.|.+  |.+.+|.+|  |.|.+|. |.|||+++|
T Consensus       196 My~fKir~C~R~---~shDwteCPf~HpgEkARRRDPRkyhYs~tpCPefrkG~C~rGD~CEyaHgvfE  261 (528)
T KOG1595|consen  196 MYSFKIRRCSRP---RSHDWTECPFAHPGEKARRRDPRKYHYSSTPCPEFRKGSCERGDSCEYAHGVFE  261 (528)
T ss_pred             EEeeeecccCCc---cCCCcccCCccCCCcccccCCcccccccCccCcccccCCCCCCCccccccceeh
Confidence            899999998754   467777777777 54445556665  688999999  9999995 999999999

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=98.76  E-value=9.1e-09  Score=119.44  Aligned_cols=130  Identities=24%  Similarity=0.262  Sum_probs=101.9

Q ss_pred             chHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccCC
Q 006236           17 SSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGS   96 (655)
Q Consensus        17 ~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~   96 (655)
                      +++|- .|+.|++..++.+|+..|.+||.+.       +    .+-|..|||+|+++|+...++.||+.| .|||.....
T Consensus       858 ytPls-la~Sggy~~iI~~llS~GseInSrt-------g----SklgisPLmlatmngh~~at~~ll~~g-sdiNaqIeT  924 (2131)
T KOG4369|consen  858 YTPLS-LARSGGYTKIIHALLSSGSEINSRT-------G----SKLGISPLMLATMNGHQAATLSLLQPG-SDINAQIET  924 (2131)
T ss_pred             cCchh-hhcCcchHHHHHHHhhccccccccc-------c----cccCcchhhhhhhccccHHHHHHhccc-chhcccccc
Confidence            44443 4455555566666666888887753       2    366889999999999999999999999 999987667


Q ss_pred             CCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCc
Q 006236           97 DGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFE  168 (655)
Q Consensus        97 ~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~  168 (655)
                      +.+|+|-+|+..|.   .++|.+||.+.+++..+-..|.|||+-++.      .|..++-++||..|+|+|.
T Consensus       925 NrnTaltla~fqgr---~evv~lLLa~~anvehRaktgltplme~As------gGyvdvg~~li~~gad~na  987 (2131)
T KOG4369|consen  925 NRNTALTLALFQGR---PEVVFLLLAAQANVEHRAKTGLTPLMEMAS------GGYVDVGNLLIAAGADTNA  987 (2131)
T ss_pred             ccccceeeccccCc---chHHHHHHHHhhhhhhhcccCCcccchhhc------CCccccchhhhhccccccc
Confidence            78888888888888   888888888888888888888888888876      6777777777777777775

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=98.70  E-value=5.1e-08  Score=100.15  Aligned_cols=90  Identities=24%  Similarity=0.288  Sum_probs=80.2

Q ss_pred             ccCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccc
Q 006236           13 LYNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNR   92 (655)
Q Consensus        13 ~~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~   92 (655)
                      +-.|.++|.|||-.|+.+.++.+|+ .|+|||..-            +..+.||||+||..|+.++.++||+.| +....
T Consensus        42 D~sGMs~LahAaykGnl~~v~lll~-~gaDvN~~q------------hg~~YTpLmFAALSGn~dvcrllldaG-a~~~~  107 (396)
T KOG1710|consen   42 DPSGMSVLAHAAYKGNLTLVELLLE-LGADVNDKQ------------HGTLYTPLMFAALSGNQDVCRLLLDAG-ARMYL  107 (396)
T ss_pred             CCCcccHHHHHHhcCcHHHHHHHHH-hCCCcCccc------------ccccccHHHHHHHcCCchHHHHHHhcc-Ccccc
Confidence            3458999999999999999888876 999999864            678899999999999999999999999 99998


Q ss_pred             ccCCCCChHHHHHHHcCCCChHHHHHHH
Q 006236           93 ACGSDGFTALHCAVAGGANSSFEVVKLL  120 (655)
Q Consensus        93 ~~d~~G~TpLH~Aa~~G~~~~~eiVklL  120 (655)
                      . +.-|+|+-..|+.-|+   .++|..+
T Consensus       108 v-NsvgrTAaqmAAFVG~---H~CV~iI  131 (396)
T KOG1710|consen  108 V-NSVGRTAAQMAAFVGH---HECVAII  131 (396)
T ss_pred             c-cchhhhHHHHHHHhcc---hHHHHHH
Confidence            8 8999999999999999   5555543

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.67  E-value=1.9e-08  Score=108.74  Aligned_cols=93  Identities=29%  Similarity=0.366  Sum_probs=81.5

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA   93 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~   93 (655)
                      +++...+++||..||+..+++++. .|.|++.+|             .+.+|+||+||..|+++++|+||+...+|++.+
T Consensus       504 ~~~~i~~~~aa~~GD~~alrRf~l-~g~D~~~~D-------------yD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~k  569 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGDLSALRRFAL-QGMDLETKD-------------YDDRTALHVAAAEGHVEVVKFLLNACKVDPDPK  569 (622)
T ss_pred             ccchhhhhhhhhcCCHHHHHHHHH-hcccccccc-------------cccchhheeecccCceeHHHHHHHHHcCCCChh
Confidence            455678899999999999999988 789998884             888999999999999999999999876899887


Q ss_pred             cCCCCChHHHHHHHcCCCChHHHHHHHHhCC
Q 006236           94 CGSDGFTALHCAVAGGANSSFEVVKLLLSAS  124 (655)
Q Consensus        94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~G  124 (655)
                       |..|+|||.-|..+++   .+++++|-++-
T Consensus       570 -DRw~rtPlDdA~~F~h---~~v~k~L~~~~  596 (622)
T KOG0506|consen  570 -DRWGRTPLDDAKHFKH---KEVVKLLEEAQ  596 (622)
T ss_pred             -hccCCCcchHhHhcCc---HHHHHHHHHHh
Confidence             9999999999999999   99999988763

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.55  E-value=3.2e-08  Score=112.60  Aligned_cols=80  Identities=26%  Similarity=0.382  Sum_probs=76.4

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccc
Q 006236           60 GFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVD  139 (655)
Q Consensus        60 d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLh  139 (655)
                      |..|+|+||+|+..+..+++++||.+| +|++.++-..|+||||-|.++|+   +|++-+||.+|+.+.++|.+|..||.
T Consensus        49 D~~GR~alH~~~S~~k~~~l~wLlqhG-idv~vqD~ESG~taLHRaiyyG~---idca~lLL~~g~SL~i~Dkeglsplq  124 (1267)
T KOG0783|consen   49 DRYGRTALHIAVSENKNSFLRWLLQHG-IDVFVQDEESGYTALHRAIYYGN---IDCASLLLSKGRSLRIKDKEGLSPLQ  124 (1267)
T ss_pred             HhhccceeeeeeccchhHHHHHHHhcC-ceeeeccccccchHhhHhhhhch---HHHHHHHHhcCCceEEecccCCCHHH
Confidence            689999999999999999999999999 99999955679999999999999   99999999999999999999999999


Q ss_pred             hhhh
Q 006236          140 LIPV  143 (655)
Q Consensus       140 lAa~  143 (655)
                      +..+
T Consensus       125 ~~~r  128 (1267)
T KOG0783|consen  125 FLSR  128 (1267)
T ss_pred             HHhh
Confidence            8877

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.51  E-value=9.2e-08  Score=103.62  Aligned_cols=97  Identities=30%  Similarity=0.380  Sum_probs=88.1

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhC-CCCCcccCCCCCCcc
Q 006236           60 GFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA-SADVNCVDVYGNKPV  138 (655)
Q Consensus        60 d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~-GADvn~~D~~G~TPL  138 (655)
                      +.++...+++||+.|.+..++.+.-.| .|++.+ |.+.+|+||.|+..|+   ++++|+||+. +.|++.+|..|+|||
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~g-~D~~~~-DyD~RTaLHvAAaEG~---v~v~kfl~~~~kv~~~~kDRw~rtPl  577 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQG-MDLETK-DYDDRTALHVAAAEGH---VEVVKFLLNACKVDPDPKDRWGRTPL  577 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHhc-cccccc-ccccchhheeecccCc---eeHHHHHHHHHcCCCChhhccCCCcc
Confidence            466788999999999999999999899 999999 9999999999999999   9999999986 799999999999999


Q ss_pred             chhhhccCCCCcChHHHHHHHHhCCCCCC
Q 006236          139 DLIPVAMKSPLHSRKRAIELLLKGDHTIF  167 (655)
Q Consensus       139 hlAa~~~~~~~~g~~eivelLL~~GAdin  167 (655)
                      +-|..      .++.+++++|-+.-...+
T Consensus       578 DdA~~------F~h~~v~k~L~~~~~~y~  600 (622)
T KOG0506|consen  578 DDAKH------FKHKEVVKLLEEAQYPYT  600 (622)
T ss_pred             hHhHh------cCcHHHHHHHHHHhcccc
Confidence            99976      899999999987654333

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.48  E-value=2.8e-07  Score=100.27  Aligned_cols=97  Identities=22%  Similarity=0.215  Sum_probs=86.1

Q ss_pred             CCCCChH------HHHHHHcCCHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCC
Q 006236           60 GFEERTP------IMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVY  133 (655)
Q Consensus        60 d~~G~TP------Lh~AA~~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~  133 (655)
                      |.+|.|.      ||-.++.|+.++.-.||..| |++|...-..|.||||.|+..|+   ..-+++|+-+|||++..|.+
T Consensus       124 DdD~~~~~~LsrQLhasvRt~nlet~LRll~lG-A~~N~~hpekg~TpLHvAAk~Gq---~~Q~ElL~vYGAD~~a~d~~  199 (669)
T KOG0818|consen  124 DDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLG-AQANFFHPEKGNTPLHVAAKAGQ---ILQAELLAVYGADPGAQDSS  199 (669)
T ss_pred             CcchhhHHHHHHHHHHHhhcccHHHHHHHHHcc-cccCCCCcccCCchhHHHHhccc---hhhhhHHhhccCCCCCCCCC
Confidence            5666666      89999999999999999999 99999866789999999999999   88999999999999999999


Q ss_pred             CCCccchhhhccCCCCcChHHHHHHHHhCCCCC
Q 006236          134 GNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTI  166 (655)
Q Consensus       134 G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdi  166 (655)
                      |.||+.+|-.      .|+.++.+.|++.-.++
T Consensus       200 GmtP~~~AR~------~gH~~laeRl~e~~y~v  226 (669)
T KOG0818|consen  200 GMTPVDYARQ------GGHHELAERLVEIQYEL  226 (669)
T ss_pred             CCcHHHHHHh------cCchHHHHHHHHHHHHH
Confidence            9999999986      88888888887644333

>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=98.48  E-value=8.8e-08  Score=102.94  Aligned_cols=68  Identities=35%  Similarity=0.639  Sum_probs=59.4

Q ss_pred             CCCCcCCCCCccC-CCCCC-CCcccccCCccccc--------cCCcccccccccCC---CCCCCC-CCCCCCCCCCcccC
Q 006236          247 YPYTCVPCPEFRK-GACPK-GDGCEYAHGVFESW--------LHPAQYRTRLCKDE---IGCARK-VCFFAHKPEELRPV  312 (655)
Q Consensus       247 y~Ys~~~CP~~rk-g~C~~-Gd~C~yaH~~~E~~--------~HP~~ykt~~C~~~---~~C~~~-~C~faH~~~elr~~  312 (655)
                      -.|++..|..+++ |.|++ |++|.|+|+..|+.        ..|.+|||++|.+|   |.|+|| .|.|+|+..|+++.
T Consensus       128 ~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r~~~~~~~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~~~~~~~  207 (332)
T KOG1677|consen  128 ERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELRLPSSENQVGNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGEPEDRAS  207 (332)
T ss_pred             ccccCCcceeeecCccccccCchhhhcCCcccccccccchhhcCCCCCCCcCCCccccCCCCCCCCcCeecCCCcccccc
Confidence            3688899998865 89999 99999999988876        13669999999999   999999 59999999999987


Q ss_pred             cC
Q 006236          313 YA  314 (655)
Q Consensus       313 ~~  314 (655)
                      +.
T Consensus       208 ~~  209 (332)
T KOG1677|consen  208 NR  209 (332)
T ss_pred             cc
Confidence            64

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.47  E-value=4e-07  Score=100.16  Aligned_cols=121  Identities=22%  Similarity=0.257  Sum_probs=104.2

Q ss_pred             hHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcc-ccccCC
Q 006236           18 SILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNV-NRACGS   96 (655)
Q Consensus        18 s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDv-N~~~d~   96 (655)
                      ..|+.++..+|+-.+++.-. .|-++-.+             +.+.+|.||+|+..|+-++|+|||++|+..+ +.. +.
T Consensus       868 eeil~av~~~D~~klqE~h~-~gg~ll~~-------------~~~~~sllh~a~~tg~~eivkyildh~p~elld~~-de  932 (1004)
T KOG0782|consen  868 EEILRAVLSSDLMKLQETHL-NGGSLLIQ-------------GPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMA-DE  932 (1004)
T ss_pred             HHHHHHHHhccHHHHHHHHh-cCCceEee-------------CcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHH-hh
Confidence            45899999999988888776 56665555             3788999999999999999999999996554 445 88


Q ss_pred             CCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhC
Q 006236           97 DGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKG  162 (655)
Q Consensus        97 ~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~  162 (655)
                      .|.|+||-|+..++   ..+..+|++.||.+...|..|.||-.-|-+      .+..+++.+|-..
T Consensus       933 ~get~lhkaa~~~~---r~vc~~lvdagasl~ktd~kg~tp~eraqq------a~d~dlaayle~r  989 (1004)
T KOG0782|consen  933 TGETALHKAACQRN---RAVCQLLVDAGASLRKTDSKGKTPQERAQQ------AGDPDLAAYLESR  989 (1004)
T ss_pred             hhhHHHHHHHHhcc---hHHHHHHHhcchhheecccCCCChHHHHHh------cCCchHHHHHhhh
Confidence            99999999999999   999999999999999999999999998875      7888888887653

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.34  E-value=1.5e-06  Score=94.87  Aligned_cols=88  Identities=19%  Similarity=0.242  Sum_probs=77.7

Q ss_pred             hHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccCCC
Q 006236           18 SILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSD   97 (655)
Q Consensus        18 s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~~   97 (655)
                      --||-.+..++.+.+.++|. .|+++|...            -..|.||||+||+.|+.--+++|+-+| ||++.. |.+
T Consensus       135 rQLhasvRt~nlet~LRll~-lGA~~N~~h------------pekg~TpLHvAAk~Gq~~Q~ElL~vYG-AD~~a~-d~~  199 (669)
T KOG0818|consen  135 KQLHSSVRTGNLETCLRLLS-LGAQANFFH------------PEKGNTPLHVAAKAGQILQAELLAVYG-ADPGAQ-DSS  199 (669)
T ss_pred             HHHHHHhhcccHHHHHHHHH-cccccCCCC------------cccCCchhHHHHhccchhhhhHHhhcc-CCCCCC-CCC
Confidence            34666778899999999998 899999876            578999999999999999999999999 999999 999


Q ss_pred             CChHHHHHHHcCCCChHHHHHHHHhC
Q 006236           98 GFTALHCAVAGGANSSFEVVKLLLSA  123 (655)
Q Consensus        98 G~TpLH~Aa~~G~~~~~eiVklLL~~  123 (655)
                      |.||+.+|-..|+   -++.+.|++.
T Consensus       200 GmtP~~~AR~~gH---~~laeRl~e~  222 (669)
T KOG0818|consen  200 GMTPVDYARQGGH---HELAERLVEI  222 (669)
T ss_pred             CCcHHHHHHhcCc---hHHHHHHHHH
Confidence            9999999999999   6666666553

>PF13606 Ank_3: Ankyrin repeat

Probab=98.27  E-value=8.8e-07  Score=61.86  Aligned_cols=28  Identities=39%  Similarity=0.770  Sum_probs=16.6

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCccc
Q 006236           63 ERTPIMIAAMFGSVAVLKYVIETGKVNVN   91 (655)
Q Consensus        63 G~TPLh~AA~~G~~evvk~LL~~G~aDvN   91 (655)
                      |+||||+||..|+++++++||++| +|+|
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~g-advn   29 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHG-ADVN   29 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcC-CCCC
Confidence            556666666666666666666655 5554

>PF13606 Ank_3: Ankyrin repeat

Probab=98.26  E-value=1.1e-06  Score=61.42  Aligned_cols=30  Identities=50%  Similarity=0.713  Sum_probs=28.3

Q ss_pred             CCChHHHHHHHcCCCChHHHHHHHHhCCCCCcc
Q 006236           97 DGFTALHCAVAGGANSSFEVVKLLLSASADVNC  129 (655)
Q Consensus        97 ~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~  129 (655)
                      +|+||||+|+..|+   .++|++||++|+|+|.
T Consensus         1 ~G~T~Lh~A~~~g~---~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGN---IEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCC---HHHHHHHHHcCCCCCC
Confidence            58999999999999   9999999999999984

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.23  E-value=2.9e-06  Score=94.03  Aligned_cols=93  Identities=28%  Similarity=0.310  Sum_probs=77.0

Q ss_pred             hHHHHHHHhCCHHHHHHHHHhcCCC--CCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccC
Q 006236           18 SILLELSASDDISAFKREIEEKGFD--VDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACG   95 (655)
Q Consensus        18 s~LL~AAa~gd~~~vk~LL~~~Gad--In~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d   95 (655)
                      .-|+.|.+..|+..+..||. +|..  +|+..           -+.+|+|+||+||..|++.+..+|+=+| +|+-.. |
T Consensus       626 qqLl~A~~~~Dl~t~~lLLA-hg~~~e~~~t~-----------~~~~grt~LHLa~~~gnVvl~QLLiWyg-~dv~~r-d  691 (749)
T KOG0705|consen  626 QQLLRAVAAEDLQTAILLLA-HGSREEVNETC-----------GEGDGRTALHLAARKGNVVLAQLLIWYG-VDVMAR-D  691 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-ccCchhhhccc-----------cCCCCcchhhhhhhhcchhHHHHHHHhC-ccceec-c
Confidence            45788888888888887776 6655  44331           2567899999999999999999999888 999988 9


Q ss_pred             CCCChHHHHHHHcCCCChHHHHHHHHhCCCCC
Q 006236           96 SDGFTALHCAVAGGANSSFEVVKLLLSASADV  127 (655)
Q Consensus        96 ~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADv  127 (655)
                      ..|+|+|.||-..|.   .+++.+||.+|+..
T Consensus       692 a~g~t~l~yar~a~s---qec~d~llq~gcp~  720 (749)
T KOG0705|consen  692 AHGRTALFYARQAGS---QECIDVLLQYGCPD  720 (749)
T ss_pred             cCCchhhhhHhhccc---HHHHHHHHHcCCCc
Confidence            999999999999998   99999999998754

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.23  E-value=1.6e-06  Score=61.50  Aligned_cols=31  Identities=48%  Similarity=0.650  Sum_probs=17.3

Q ss_pred             CChHHHHHHHcCCCChHHHHHHHHhCCCCCcccC
Q 006236           98 GFTALHCAVAGGANSSFEVVKLLLSASADVNCVD  131 (655)
Q Consensus        98 G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D  131 (655)
                      |.||||+|+..|+   .+++++||++|++++.+|
T Consensus         2 G~TpLh~A~~~~~---~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    2 GNTPLHYAAQRGH---PDIVKLLLKHGADINARD   32 (33)
T ss_dssp             SBBHHHHHHHTTC---HHHHHHHHHTTSCTTCBC
T ss_pred             cccHHHHHHHHHH---HHHHHHHHHCcCCCCCCC
Confidence            5555555555555   555555555555555544

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.23  E-value=4.6e-07  Score=103.50  Aligned_cols=83  Identities=24%  Similarity=0.206  Sum_probs=76.9

Q ss_pred             cccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCC-CCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCc
Q 006236           90 VNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDV-YGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFE  168 (655)
Q Consensus        90 vN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~-~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~  168 (655)
                      +|.+ |..|+|+||+|+..+.   ..++++||.+|+|++.+|. .|+||||-|+.      .|+++++-+||++|+...+
T Consensus        45 anik-D~~GR~alH~~~S~~k---~~~l~wLlqhGidv~vqD~ESG~taLHRaiy------yG~idca~lLL~~g~SL~i  114 (1267)
T KOG0783|consen   45 ANIK-DRYGRTALHIAVSENK---NSFLRWLLQHGIDVFVQDEESGYTALHRAIY------YGNIDCASLLLSKGRSLRI  114 (1267)
T ss_pred             hhHH-Hhhccceeeeeeccch---hHHHHHHHhcCceeeeccccccchHhhHhhh------hchHHHHHHHHhcCCceEE
Confidence            5666 8999999999999998   9999999999999999997 69999999875      9999999999999999999


Q ss_pred             ccccCCCCcccccc
Q 006236          169 EEELVNIPVPQLSK  182 (655)
Q Consensus       169 ~d~~g~tpl~~l~~  182 (655)
                      +|++|..|+..+.+
T Consensus       115 ~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  115 KDKEGLSPLQFLSR  128 (1267)
T ss_pred             ecccCCCHHHHHhh
Confidence            99999999877665

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.14  E-value=2.9e-06  Score=60.17  Aligned_cols=31  Identities=26%  Similarity=0.498  Sum_probs=29.6

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236           62 EERTPIMIAAMFGSVAVLKYVIETGKVNVNRA   93 (655)
Q Consensus        62 ~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~   93 (655)
                      +|+||||+|+..|+.+++++||++| +|++.+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~g-a~~~~~   31 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHG-ADINAR   31 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTT-SCTTCB
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCc-CCCCCC
Confidence            4899999999999999999999999 999987

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.12  E-value=4.7e-06  Score=92.47  Aligned_cols=92  Identities=24%  Similarity=0.296  Sum_probs=79.2

Q ss_pred             HHHHHHcCCHHHHHHHHHcCC-Ccccccc-CCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhc
Q 006236           67 IMIAAMFGSVAVLKYVIETGK-VNVNRAC-GSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVA  144 (655)
Q Consensus        67 Lh~AA~~G~~evvk~LL~~G~-aDvN~~~-d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~  144 (655)
                      |.-|+...++..+-+||.+|. ..+|..| +.+|+|+||+|+..|+   +.+.++|+=+|+|+-+.|.+|+|+|.||-. 
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gn---Vvl~QLLiWyg~dv~~rda~g~t~l~yar~-  703 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGN---VVLAQLLIWYGVDVMARDAHGRTALFYARQ-  703 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcc---hhHHHHHHHhCccceecccCCchhhhhHhh-
Confidence            566777788888999999972 2455444 4577999999999999   999999999999999999999999999986 


Q ss_pred             cCCCCcChHHHHHHHHhCCCCCC
Q 006236          145 MKSPLHSRKRAIELLLKGDHTIF  167 (655)
Q Consensus       145 ~~~~~~g~~eivelLL~~GAdin  167 (655)
                           .+..+|+.+||++|.--+
T Consensus       704 -----a~sqec~d~llq~gcp~e  721 (749)
T KOG0705|consen  704 -----AGSQECIDVLLQYGCPDE  721 (749)
T ss_pred             -----cccHHHHHHHHHcCCCcc
Confidence                 899999999999998654

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.03  E-value=6.7e-06  Score=90.85  Aligned_cols=88  Identities=26%  Similarity=0.308  Sum_probs=72.3

Q ss_pred             hHHHHHHHcCCHHHHHHHHHc-CCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhh
Q 006236           65 TPIMIAAMFGSVAVLKYVIET-GKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPV  143 (655)
Q Consensus        65 TPLh~AA~~G~~evvk~LL~~-G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~  143 (655)
                      -|||+++.....+-+..++.. -...|+.. |..|+||||+|+..|+   .+.+++|+.+|||+..+|.+|++|||-|+.
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~-D~~g~TpLhlAV~Lg~---~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~   97 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRR-DPPGRTPLHLAVRLGH---VEAARILLSAGADVSIKNNEGWSPLHEAVS   97 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccc-cCCCCccHHHHHHhcC---HHHHHHHHhcCCCccccccccccHHHHHHH
Confidence            469999988877666554332 22567777 8999999999999999   999999999999999999999999999987


Q ss_pred             ccCCCCcChHHHHHHHHhC
Q 006236          144 AMKSPLHSRKRAIELLLKG  162 (655)
Q Consensus       144 ~~~~~~~g~~eivelLL~~  162 (655)
                            .|+.+++..+|.+
T Consensus        98 ------~g~~q~i~~vlr~  110 (560)
T KOG0522|consen   98 ------TGNEQIITEVLRH  110 (560)
T ss_pred             ------cCCHHHHHHHHHH
Confidence                  7888777666653

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.02  E-value=1.1e-05  Score=93.45  Aligned_cols=127  Identities=19%  Similarity=0.145  Sum_probs=101.7

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA   93 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~   93 (655)
                      ..+.--.|.++..||...+++.|++....          +.+++.+|.-|+++|++|+.+.+.+++++|++++ ..+   
T Consensus        23 ~~~e~~fL~a~E~gd~~~V~k~l~~~~~~----------~lninc~d~lGr~al~iai~nenle~~eLLl~~~-~~~---   88 (822)
T KOG3609|consen   23 NEGEKGFLLAHENGDVPLVAKALEYKAVS----------KLNINCRDPLGRLALHIAIDNENLELQELLLDTS-SEE---   88 (822)
T ss_pred             chhhHHHHHHHHcCChHHHHHHHHhcccc----------ccchhccChHhhhceecccccccHHHHHHHhcCc-ccc---
Confidence            34556688999999999999999876541          1223344689999999999999999999999998 444   


Q ss_pred             cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCC----------cccCCCCCCccchhhhccCCCCcChHHHHHHHHhCC
Q 006236           94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADV----------NCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGD  163 (655)
Q Consensus        94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADv----------n~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~G  163 (655)
                           .-+|.+|+..|.   ..+|++++.+-.+.          ...-..+.|||.+||.      .++.||+++||++|
T Consensus        89 -----gdALL~aI~~~~---v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh------~NnyEil~~Ll~kg  154 (822)
T KOG3609|consen   89 -----GDALLLAIAVGS---VPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAH------LNNFEILQCLLTRG  154 (822)
T ss_pred             -----chHHHHHHHHHH---HHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHH------hcchHHHHHHHHcC
Confidence                 248999999998   99999999874332          1223356799999997      89999999999999


Q ss_pred             CCCCc
Q 006236          164 HTIFE  168 (655)
Q Consensus       164 Adin~  168 (655)
                      +.+..
T Consensus       155 ~~i~~  159 (822)
T KOG3609|consen  155 HCIPI  159 (822)
T ss_pred             CCCCC
Confidence            98864

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.97  E-value=1.6e-05  Score=87.92  Aligned_cols=87  Identities=23%  Similarity=0.392  Sum_probs=73.0

Q ss_pred             HHHHHHHhCCHHHHHHHHHhc-CCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccCCC
Q 006236           19 ILLELSASDDISAFKREIEEK-GFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSD   97 (655)
Q Consensus        19 ~LL~AAa~gd~~~vk~LL~~~-GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~~   97 (655)
                      +||.++...+.+.+.++|... +..|+..             |..|+||||+|+..|+.+.++.|+..| +|+..+ +..
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~-------------D~~g~TpLhlAV~Lg~~~~a~~Ll~a~-Adv~~k-N~~   87 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVIDRR-------------DPPGRTPLHLAVRLGHVEAARILLSAG-ADVSIK-NNE   87 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhceeccc-------------cCCCCccHHHHHHhcCHHHHHHHHhcC-CCcccc-ccc
Confidence            377778888888888766533 4446666             588999999999999999999999999 999999 999


Q ss_pred             CChHHHHHHHcCCCChHHHHHHHHhC
Q 006236           98 GFTALHCAVAGGANSSFEVVKLLLSA  123 (655)
Q Consensus        98 G~TpLH~Aa~~G~~~~~eiVklLL~~  123 (655)
                      |+++||-|+..|+   .+++..+|.+
T Consensus        88 gWs~L~EAv~~g~---~q~i~~vlr~  110 (560)
T KOG0522|consen   88 GWSPLHEAVSTGN---EQIITEVLRH  110 (560)
T ss_pred             cccHHHHHHHcCC---HHHHHHHHHH
Confidence            9999999999999   7776666654

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=97.73  E-value=3.7e-05  Score=85.06  Aligned_cols=102  Identities=19%  Similarity=0.267  Sum_probs=83.5

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCC--CcccCCCCCCccchhhhc
Q 006236           67 IMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASAD--VNCVDVYGNKPVDLIPVA  144 (655)
Q Consensus        67 Lh~AA~~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAD--vn~~D~~G~TPLhlAa~~  144 (655)
                      |..|+..+.+--+..+-..| .++-.. +.+..|.||+|+..|+   -+||+|||++|..  ++..|..|.|+||-|+. 
T Consensus       870 il~av~~~D~~klqE~h~~g-g~ll~~-~~~~~sllh~a~~tg~---~eivkyildh~p~elld~~de~get~lhkaa~-  943 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNG-GSLLIQ-GPDHCSLLHYAAKTGN---GEIVKYILDHGPSELLDMADETGETALHKAAC-  943 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcC-CceEee-CcchhhHHHHHHhcCC---hHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHH-
Confidence            45566666543333344455 677777 8899999999999999   9999999999853  57788999999999986 


Q ss_pred             cCCCCcChHHHHHHHHhCCCCCCcccccCCCCccc
Q 006236          145 MKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQ  179 (655)
Q Consensus       145 ~~~~~~g~~eivelLL~~GAdin~~d~~g~tpl~~  179 (655)
                           .++..+.++|++.|+.+...|..|++|-..
T Consensus       944 -----~~~r~vc~~lvdagasl~ktd~kg~tp~er  973 (1004)
T KOG0782|consen  944 -----QRNRAVCQLLVDAGASLRKTDSKGKTPQER  973 (1004)
T ss_pred             -----hcchHHHHHHHhcchhheecccCCCChHHH
Confidence                 888999999999999999999999998533

>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]

Probab=97.73  E-value=1.8e-05  Score=82.03  Aligned_cols=68  Identities=32%  Similarity=0.615  Sum_probs=55.2

Q ss_pred             CCCc--CCCCCc-cCCCCCC---CCccccc---CCccccccC--CcccccccccCC---CCCCCC-CCCCCCCCCCcccC
Q 006236          248 PYTC--VPCPEF-RKGACPK---GDGCEYA---HGVFESWLH--PAQYRTRLCKDE---IGCARK-VCFFAHKPEELRPV  312 (655)
Q Consensus       248 ~Ys~--~~CP~~-rkg~C~~---Gd~C~ya---H~~~E~~~H--P~~ykt~~C~~~---~~C~~~-~C~faH~~~elr~~  312 (655)
                      -|.+  ..|..| ++|.|++   |+.|+|+   ||--|+-..  -..|||.+|.+|   |.|+|| .|-|+|+.+++...
T Consensus       225 L~kt~~~lc~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l~~k~k~~~frTePcinwe~sGyc~yg~Rc~F~hgd~~~ie~  304 (351)
T COG5063         225 LYKTNPELCESFTRKGTCPYWISGVKCQFACRGHGLNELKSKKKKQNFRTEPCINWEKSGYCPYGLRCCFKHGDDSDIEM  304 (351)
T ss_pred             hhcCCHHHhhccCcCCCCccccccccccccccccccccccccccccccccCCccchhhcccCccccccccccCChhhccc
Confidence            3555  789988 5699999   9999999   996555332  335999999999   999998 59999999999877


Q ss_pred             cCC
Q 006236          313 YAS  315 (655)
Q Consensus       313 ~~~  315 (655)
                      |.-
T Consensus       305 ~~~  307 (351)
T COG5063         305 YEE  307 (351)
T ss_pred             ccc
Confidence            753

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.71  E-value=2.5e-05  Score=92.44  Aligned_cols=78  Identities=29%  Similarity=0.389  Sum_probs=74.6

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccch
Q 006236           61 FEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDL  140 (655)
Q Consensus        61 ~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhl  140 (655)
                      ..|.|+||.|+..|...++++||++| +++|.. +..|+||||.+...|+   ...+.+|++.||+.++.|.+|.+||++
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~g-a~vn~~-d~~g~~plh~~~~~g~---~~~~~~ll~~~a~~~a~~~~~~~~l~~  728 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNG-ADVNAL-DSKGRTPLHHATASGH---TSIACLLLKRGADPNAFDPDGKLPLDI  728 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcC-Ccchhh-hccCCCcchhhhhhcc---cchhhhhccccccccccCccCcchhhH
Confidence            56899999999999999999999999 999999 9999999999999999   999999999999999999999999999


Q ss_pred             hhh
Q 006236          141 IPV  143 (655)
Q Consensus       141 Aa~  143 (655)
                      |..
T Consensus       729 a~~  731 (785)
T KOG0521|consen  729 AME  731 (785)
T ss_pred             Hhh
Confidence            975

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.67  E-value=0.00011  Score=78.48  Aligned_cols=86  Identities=30%  Similarity=0.262  Sum_probs=71.8

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhh
Q 006236           64 RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPV  143 (655)
Q Consensus        64 ~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~  143 (655)
                      .--|..||+.|.++.|++|++.| ++||.+ |.....||.+|+..||   .++||+||++||-...-..+|...+.-|. 
T Consensus        37 f~elceacR~GD~d~v~~LVetg-vnVN~v-D~fD~spL~lAsLcGH---e~vvklLLenGAiC~rdtf~G~RC~YgaL-  110 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETG-VNVNAV-DRFDSSPLYLASLCGH---EDVVKLLLENGAICSRDTFDGDRCHYGAL-  110 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhC-CCcchh-hcccccHHHHHHHcCc---HHHHHHHHHcCCcccccccCcchhhhhhh-
Confidence            45689999999999999999999 999999 9999999999999999   99999999999987766667877644332 


Q ss_pred             ccCCCCcChHHHHHHHHhCC
Q 006236          144 AMKSPLHSRKRAIELLLKGD  163 (655)
Q Consensus       144 ~~~~~~~g~~eivelLL~~G  163 (655)
                              +..|-++||++.
T Consensus       111 --------nd~IR~mllsyd  122 (516)
T KOG0511|consen  111 --------NDRIRRMLLSYD  122 (516)
T ss_pred             --------hHHHHHHHHHHH
Confidence                    345566677653

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.62  E-value=0.0002  Score=70.40  Aligned_cols=69  Identities=25%  Similarity=0.244  Sum_probs=60.9

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCC
Q 006236           60 GFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDV  132 (655)
Q Consensus        60 d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~  132 (655)
                      |..|+|+||.||..|+.+++.||+..|-++|... |..+.+++.+|-..|.   .++|+.|.+.-.+-...+.
T Consensus         9 D~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~-d~ssldaaqlaek~g~---~~fvh~lfe~~~ets~p~n   77 (223)
T KOG2384|consen    9 DAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVT-DESSLDAAQLAEKGGA---QAFVHSLFENDRETSHPMN   77 (223)
T ss_pred             hhhcchHHHHHhhhcchhHHHHHhccCccccccc-ccccchHHHHHHhcCh---HHHHHHHHHHhccCCCccc
Confidence            5999999999999999999999999997788876 9999999999999999   9999999988655544443

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.37  E-value=0.00029  Score=69.28  Aligned_cols=70  Identities=27%  Similarity=0.305  Sum_probs=63.3

Q ss_pred             CccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCC-CCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCC
Q 006236           88 VNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS-ADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTI  166 (655)
Q Consensus        88 aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~G-ADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdi  166 (655)
                      .+||.. |..|||||++|+..|+   .+.|.||+.+| +++...|..|.+++.+|-+      .|..+++++|.+.-.+-
T Consensus         3 ~~in~r-D~fgWTalmcaa~eg~---~eavsyllgrg~a~vgv~d~ssldaaqlaek------~g~~~fvh~lfe~~~et   72 (223)
T KOG2384|consen    3 GNINAR-DAFGWTALMCAAMEGS---NEAVSYLLGRGVAFVGVTDESSLDAAQLAEK------GGAQAFVHSLFENDRET   72 (223)
T ss_pred             CCccch-hhhcchHHHHHhhhcc---hhHHHHHhccCcccccccccccchHHHHHHh------cChHHHHHHHHHHhccC
Confidence            688988 9999999999999999   99999999999 9999999999999999976      89999999999874443


Q ss_pred             C
Q 006236          167 F  167 (655)
Q Consensus       167 n  167 (655)
                      .
T Consensus        73 s   73 (223)
T KOG2384|consen   73 S   73 (223)
T ss_pred             C
Confidence            3

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.26  E-value=0.00023  Score=84.35  Aligned_cols=92  Identities=22%  Similarity=0.221  Sum_probs=63.7

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCc------ccCCC
Q 006236           60 GFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVN------CVDVY  133 (655)
Q Consensus        60 d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn------~~D~~  133 (655)
                      |.+|.-.+|++|..| .+..-+|+......++++ |..|+||||||+..|+   ..++..|++.|++.+      ..+-.
T Consensus       605 d~d~qgV~hfca~lg-~ewA~ll~~~~~~ai~i~-D~~G~tpL~wAa~~G~---e~l~a~l~~lga~~~~~tdps~~~p~  679 (975)
T KOG0520|consen  605 DRDGQGVIHFCAALG-YEWAFLPISADGVAIDIR-DRNGWTPLHWAAFRGR---EKLVASLIELGADPGAVTDPSPETPG  679 (975)
T ss_pred             cccCCChhhHhhhcC-CceeEEEEeecccccccc-cCCCCcccchHhhcCH---HHHHHHHHHhccccccccCCCCCCCC
Confidence            466677777755544 444444444333888888 8999999999999998   888888888776543      23345


Q ss_pred             CCCccchhhhccCCCCcChHHHHHHHHhC
Q 006236          134 GNKPVDLIPVAMKSPLHSRKRAIELLLKG  162 (655)
Q Consensus       134 G~TPLhlAa~~~~~~~~g~~eivelLL~~  162 (655)
                      |.|+..+|..      +++..+.-+|-+.
T Consensus       680 g~ta~~la~s------~g~~gia~~lse~  702 (975)
T KOG0520|consen  680 GKTAADLARA------NGHKGIAGYLSEK  702 (975)
T ss_pred             CCchhhhhhc------ccccchHHHHhhh
Confidence            7788777765      6666666666544

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.14  E-value=0.0018  Score=69.51  Aligned_cols=86  Identities=23%  Similarity=0.363  Sum_probs=68.1

Q ss_pred             CchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccC
Q 006236           16 KSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACG   95 (655)
Q Consensus        16 g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d   95 (655)
                      .+--|.+|+..||.+.++.+++ .|.+||.+|             .....||.+|+..||.++||+||++| |-...- .
T Consensus        36 ~f~elceacR~GD~d~v~~LVe-tgvnVN~vD-------------~fD~spL~lAsLcGHe~vvklLLenG-AiC~rd-t   99 (516)
T KOG0511|consen   36 PFGELCEACRAGDVDRVRYLVE-TGVNVNAVD-------------RFDSSPLYLASLCGHEDVVKLLLENG-AICSRD-T   99 (516)
T ss_pred             chHHHHHHhhcccHHHHHHHHH-hCCCcchhh-------------cccccHHHHHHHcCcHHHHHHHHHcC-Cccccc-c
Confidence            3677899999999999999998 999999996             66789999999999999999999999 766543 4


Q ss_pred             CCCChHHHHHHHcCCCChHHHHHHHHhC
Q 006236           96 SDGFTALHCAVAGGANSSFEVVKLLLSA  123 (655)
Q Consensus        96 ~~G~TpLH~Aa~~G~~~~~eiVklLL~~  123 (655)
                      .+|.. -||++.+.     .|-++||.+
T Consensus       100 f~G~R-C~YgaLnd-----~IR~mllsy  121 (516)
T KOG0511|consen  100 FDGDR-CHYGALND-----RIRRMLLSY  121 (516)
T ss_pred             cCcch-hhhhhhhH-----HHHHHHHHH
Confidence            45554 45666543     355566654

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=96.98  E-value=0.00052  Score=81.53  Aligned_cols=97  Identities=20%  Similarity=0.213  Sum_probs=80.1

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHc-CCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHh-CCCCCcccCCCCCCc
Q 006236           60 GFEERTPIMIAAMFGSVAVLKYVIET-GKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLS-ASADVNCVDVYGNKP  137 (655)
Q Consensus        60 d~~G~TPLh~AA~~G~~evvk~LL~~-G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~-~GADvn~~D~~G~TP  137 (655)
                      ...|+|-||+++..+...+++.+++. + .....- +.+|...+|+++..|    .++.-+|+. .|..++.+|.+|+||
T Consensus       571 ~~r~~lllhL~a~~lyawLie~~~e~~~-~~~~el-d~d~qgV~hfca~lg----~ewA~ll~~~~~~ai~i~D~~G~tp  644 (975)
T KOG0520|consen  571 NFRDMLLLHLLAELLYAWLIEKVIEWAG-SGDLEL-DRDGQGVIHFCAALG----YEWAFLPISADGVAIDIRDRNGWTP  644 (975)
T ss_pred             CCcchHHHHHHHHHhHHHHHHHHhcccc-cCchhh-cccCCChhhHhhhcC----CceeEEEEeecccccccccCCCCcc
Confidence            57799999999999999999999996 5 333333 677778888876666    466666654 589999999999999


Q ss_pred             cchhhhccCCCCcChHHHHHHHHhCCCCCCc
Q 006236          138 VDLIPVAMKSPLHSRKRAIELLLKGDHTIFE  168 (655)
Q Consensus       138 LhlAa~~~~~~~~g~~eivelLL~~GAdin~  168 (655)
                      ||+|+.      .|+.+++..|++.|++...
T Consensus       645 L~wAa~------~G~e~l~a~l~~lga~~~~  669 (975)
T KOG0520|consen  645 LHWAAF------RGREKLVASLIELGADPGA  669 (975)
T ss_pred             cchHhh------cCHHHHHHHHHHhcccccc
Confidence            999986      9999999999999988773

>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]

Probab=96.95  E-value=0.00027  Score=74.48  Aligned_cols=64  Identities=30%  Similarity=0.622  Sum_probs=52.6

Q ss_pred             CCCCCccCCCCCCCCc-ccccCCccccccCCcccccccccCC--CCCCCCCCCCCCCCCCcccCcCCCC
Q 006236          252 VPCPEFRKGACPKGDG-CEYAHGVFESWLHPAQYRTRLCKDE--IGCARKVCFFAHKPEELRPVYASTG  317 (655)
Q Consensus       252 ~~CP~~rkg~C~~Gd~-C~yaH~~~E~~~HP~~ykt~~C~~~--~~C~~~~C~faH~~~elr~~~~~~~  317 (655)
                      +.|++|.++.|.+||. |.|+|...-+-  -..-+-..|-|+  |.|.|..|.|+|.+.+|+..+--+|
T Consensus        38 eVCReF~rn~C~R~d~~CkfaHP~~~~~--V~~g~v~aC~Ds~kgrCsR~nCkylHpp~hlkdql~ing  104 (331)
T KOG2494|consen   38 EVCREFLRNTCSRGDRECKFAHPPKNCQ--VSNGRVIACFDSQKGRCSRENCKYLHPPQHLKDQLKING  104 (331)
T ss_pred             HHHHHHHhccccCCCccccccCCCCCCC--ccCCeEEEEeccccCccCcccceecCCChhhhhhhhhcc
Confidence            4899999999999998 99999966332  233466789999  9999999999999999887665554

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=96.80  E-value=0.0014  Score=77.96  Aligned_cols=88  Identities=23%  Similarity=0.271  Sum_probs=70.8

Q ss_pred             CCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccc
Q 006236           15 NKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRAC   94 (655)
Q Consensus        15 ~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~   94 (655)
                      .|.+.||.+...++.. ..++|++.|++||..+             ..|+||||.+...|+...+..|++.| ++.+.. 
T Consensus       655 ~~~s~lh~a~~~~~~~-~~e~ll~~ga~vn~~d-------------~~g~~plh~~~~~g~~~~~~~ll~~~-a~~~a~-  718 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSG-AVELLLQNGADVNALD-------------SKGRTPLHHATASGHTSIACLLLKRG-ADPNAF-  718 (785)
T ss_pred             cccchhhhhhccchHH-HHHHHHhcCCcchhhh-------------ccCCCcchhhhhhcccchhhhhcccc-cccccc-
Confidence            3456666655555555 4555566999999985             99999999999999999999999999 999999 


Q ss_pred             CCCCChHHHHHHHcCCCChHHHHHHHH
Q 006236           95 GSDGFTALHCAVAGGANSSFEVVKLLL  121 (655)
Q Consensus        95 d~~G~TpLH~Aa~~G~~~~~eiVklLL  121 (655)
                      +.+|.++|++|....+   .+++-+|.
T Consensus       719 ~~~~~~~l~~a~~~~~---~d~~~l~~  742 (785)
T KOG0521|consen  719 DPDGKLPLDIAMEAAN---ADIVLLLR  742 (785)
T ss_pred             CccCcchhhHHhhhcc---ccHHHHHh
Confidence            9999999999988755   55554443

>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.53  E-value=0.00057  Score=46.58  Aligned_cols=22  Identities=41%  Similarity=0.714  Sum_probs=11.8

Q ss_pred             cccccccCC---CCCCCCC-CCCCCC
Q 006236          284 YRTRLCKDE---IGCARKV-CFFAHK  305 (655)
Q Consensus       284 ykt~~C~~~---~~C~~~~-C~faH~  305 (655)
                      ||+.+|+.|   |.|++|. |.|+|+
T Consensus         1 ~k~~~C~~f~~~g~C~~G~~C~f~H~   26 (27)
T PF00642_consen    1 YKTKLCRFFMRTGTCPFGDKCRFAHG   26 (27)
T ss_dssp             TTSSB-HHHHHTS--TTGGGSSSBSS
T ss_pred             CccccChhhccCCccCCCCCcCccCC
Confidence            466666665   6666663 666665

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=95.80  E-value=0.019  Score=63.79  Aligned_cols=63  Identities=27%  Similarity=0.202  Sum_probs=54.2

Q ss_pred             HHHHHHHHHcCCCccccc-----cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhh
Q 006236           76 VAVLKYVIETGKVNVNRA-----CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIP  142 (655)
Q Consensus        76 ~evvk~LL~~G~aDvN~~-----~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa  142 (655)
                      ...|++|.+++ ++.|..     .+..-.|+||+|+..|.   .++|.+||+.|+|+..+|..|.||..++.
T Consensus       404 p~~ie~lken~-lsgnf~~~pe~~~~ltsT~LH~aa~qg~---~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENL-LSGNFDVTPEANDYLTSTFLHYAAAQGA---RKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcC-CcccccccccccccccchHHHHHHhcch---HHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            56788888888 777643     14456899999999999   99999999999999999999999999863

>smart00248 ANK ankyrin repeats

Probab=95.79  E-value=0.015  Score=37.10  Aligned_cols=27  Identities=33%  Similarity=0.680  Sum_probs=16.2

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCcc
Q 006236           63 ERTPIMIAAMFGSVAVLKYVIETGKVNV   90 (655)
Q Consensus        63 G~TPLh~AA~~G~~evvk~LL~~G~aDv   90 (655)
                      |.||||+|+..++.+++++|++.+ .++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~-~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKG-ADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcC-CCC
Confidence            456666666666666666666655 443

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=95.59  E-value=0.021  Score=36.35  Aligned_cols=29  Identities=59%  Similarity=0.812  Sum_probs=26.1

Q ss_pred             CCChHHHHHHHcCCCChHHHHHHHHhCCCCCc
Q 006236           97 DGFTALHCAVAGGANSSFEVVKLLLSASADVN  128 (655)
Q Consensus        97 ~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn  128 (655)
                      .|.|+||+|+..++   .+++++|++.+.+++
T Consensus         1 ~~~~~l~~~~~~~~---~~~~~~ll~~~~~~~   29 (30)
T smart00248        1 DGRTPLHLAAENGN---LEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCCHHHHHHHcCC---HHHHHHHHHcCCCCC
Confidence            47899999999999   999999999988765

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=95.51  E-value=0.009  Score=64.35  Aligned_cols=61  Identities=36%  Similarity=0.677  Sum_probs=47.4

Q ss_pred             CCCCCc-cCCCCCCCCcccccCCcccc----------ccCCcccccccccCC---CCCCC-CC-CCCCCCCCCcccC
Q 006236          252 VPCPEF-RKGACPKGDGCEYAHGVFES----------WLHPAQYRTRLCKDE---IGCAR-KV-CFFAHKPEELRPV  312 (655)
Q Consensus       252 ~~CP~~-rkg~C~~Gd~C~yaH~~~E~----------~~HP~~ykt~~C~~~---~~C~~-~~-C~faH~~~elr~~  312 (655)
                      ..|-.+ +.+.|.++..|.+.|...+.          -.-|..|||.+|+.|   |.|.| +. |.|||+.+|+|..
T Consensus        87 ~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~~~~~~~~~~p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r~~  163 (332)
T KOG1677|consen   87 GDCSAYLRTGVCGYGSSCRYNHPDLRLRPRPVRRSRGERKPERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELRLP  163 (332)
T ss_pred             cccccccccCCCCCCCCCCccCcccccccCCccccccccCcccccCCcceeeecCccccccCchhhhcCCccccccc
Confidence            356554 34789888888888885222          223778999999999   99999 85 9999999999954

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=95.47  E-value=0.035  Score=61.71  Aligned_cols=85  Identities=14%  Similarity=0.141  Sum_probs=66.7

Q ss_pred             HHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCChH
Q 006236           22 ELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTA  101 (655)
Q Consensus        22 ~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~~G~Tp  101 (655)
                      .....+....++..|.++++++|..-       -....+.---|+||+|+..|..++|.+||+.| +|+..+ |..|+||
T Consensus       396 s~lkk~~~p~~ie~lken~lsgnf~~-------~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg-~Dp~~k-d~~Grtp  466 (591)
T KOG2505|consen  396 SRLKKKPEPDSIEALKENLLSGNFDV-------TPEANDYLTSTFLHYAAAQGARKCVKYFLEEG-CDPSTK-DGAGRTP  466 (591)
T ss_pred             HHHhccCchhHHHHHHhcCCcccccc-------cccccccccchHHHHHHhcchHHHHHHHHHhc-CCchhc-ccCCCCc
Confidence            33445677788888888999988752       22233566789999999999999999999999 999999 9999999


Q ss_pred             HHHHHHcCCCChHHHHHHHH
Q 006236          102 LHCAVAGGANSSFEVVKLLL  121 (655)
Q Consensus       102 LH~Aa~~G~~~~~eiVklLL  121 (655)
                      ..++.   +   .||-..++
T Consensus       467 y~ls~---n---kdVk~~F~  480 (591)
T KOG2505|consen  467 YSLSA---N---KDVKSIFI  480 (591)
T ss_pred             ccccc---c---HHHHHHHH
Confidence            99987   2   45544444

>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.26  E-value=0.0037  Score=42.56  Aligned_cols=25  Identities=48%  Similarity=1.109  Sum_probs=19.1

Q ss_pred             CCcCCCCCccC-CCCCCCCcccccCC
Q 006236          249 YTCVPCPEFRK-GACPKGDGCEYAHG  273 (655)
Q Consensus       249 Ys~~~CP~~rk-g~C~~Gd~C~yaH~  273 (655)
                      |+..+|+.|.+ |.|++|+.|.|+|+
T Consensus         1 ~k~~~C~~f~~~g~C~~G~~C~f~H~   26 (27)
T PF00642_consen    1 YKTKLCRFFMRTGTCPFGDKCRFAHG   26 (27)
T ss_dssp             TTSSB-HHHHHTS--TTGGGSSSBSS
T ss_pred             CccccChhhccCCccCCCCCcCccCC
Confidence            56778998866 99999999999997

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....

>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]

Probab=95.08  E-value=0.026  Score=59.21  Aligned_cols=65  Identities=22%  Similarity=0.444  Sum_probs=52.0

Q ss_pred             CCCCCCcCCCCCccC-CCCCCCCcccccCCcccc---ccCC-cccccccccCC---CCCCCC-CCCCCCCCCCc
Q 006236          245 RKYPYTCVPCPEFRK-GACPKGDGCEYAHGVFES---WLHP-AQYRTRLCKDE---IGCARK-VCFFAHKPEEL  309 (655)
Q Consensus       245 r~y~Ys~~~CP~~rk-g~C~~Gd~C~yaH~~~E~---~~HP-~~ykt~~C~~~---~~C~~~-~C~faH~~~el  309 (655)
                      .+-.|++++|-++.+ |.|++|-.|.|.||..+.   ..|+ ..|+...|+.+   |.|+++ .|-|.|...-+
T Consensus       268 k~~~frTePcinwe~sGyc~yg~Rc~F~hgd~~~ie~~~~~~~~y~~~~crt~~~~g~~p~g~~~c~~~dkkn~  341 (351)
T COG5063         268 KKQNFRTEPCINWEKSGYCPYGLRCCFKHGDDSDIEMYEEASLGYLDGPCRTRAKGGAFPSGGAVCKSFDKKNL  341 (351)
T ss_pred             cccccccCCccchhhcccCccccccccccCChhhccccccccccccccccccccccCccCCCCchhhccccchh
Confidence            345799999999977 899999999999998665   3455 36899999988   899965 67788876544

>smart00356 ZnF_C3H1 zinc finger

Probab=95.07  E-value=0.015  Score=38.87  Aligned_cols=24  Identities=42%  Similarity=0.987  Sum_probs=12.2

Q ss_pred             CcCCCCCccCCCCCCCCcccccCC
Q 006236          250 TCVPCPEFRKGACPKGDGCEYAHG  273 (655)
Q Consensus       250 s~~~CP~~rkg~C~~Gd~C~yaH~  273 (655)
                      +...|+.|..|.|.+|+.|.|.|.
T Consensus         3 k~~~C~~~~~g~C~~g~~C~~~H~   26 (27)
T smart00356        3 KTELCKFFKRGYCPYGDRCKFAHP   26 (27)
T ss_pred             CCCcCcCccCCCCCCCCCcCCCCc
Confidence            334455554455555555555553

>smart00356 ZnF_C3H1 zinc finger

Probab=94.57  E-value=0.029  Score=37.48  Aligned_cols=23  Identities=43%  Similarity=0.607  Sum_probs=20.0

Q ss_pred             cccccccCC--CCCCCCC-CCCCCCC
Q 006236          284 YRTRLCKDE--IGCARKV-CFFAHKP  306 (655)
Q Consensus       284 ykt~~C~~~--~~C~~~~-C~faH~~  306 (655)
                      +|+.+|++|  |.|+++. |.|+|..
T Consensus         2 ~k~~~C~~~~~g~C~~g~~C~~~H~~   27 (27)
T smart00356        2 YKTELCKFFKRGYCPYGDRCKFAHPL   27 (27)
T ss_pred             CCCCcCcCccCCCCCCCCCcCCCCcC
Confidence            688899998  8999884 9999973

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=94.48  E-value=0.07  Score=62.88  Aligned_cols=89  Identities=16%  Similarity=0.192  Sum_probs=65.1

Q ss_pred             CchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcc-----
Q 006236           16 KSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNV-----   90 (655)
Q Consensus        16 g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDv-----   90 (655)
                      |.+.|+.|..+.+.+. +++|.+++.++  .                  .+|.+|+..|..++|++|+.+. .+.     
T Consensus        62 Gr~al~iai~nenle~-~eLLl~~~~~~--g------------------dALL~aI~~~~v~~VE~ll~~~-~~~~~~~~  119 (822)
T KOG3609|consen   62 GRLALHIAIDNENLEL-QELLLDTSSEE--G------------------DALLLAIAVGSVPLVELLLVHF-VDAPYLER  119 (822)
T ss_pred             hhhceecccccccHHH-HHHHhcCcccc--c------------------hHHHHHHHHHHHHHHHHHHhcc-cccchhcc
Confidence            5666666666666555 44554454443  2                  4899999999999999999885 322     


Q ss_pred             ----ccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcc
Q 006236           91 ----NRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNC  129 (655)
Q Consensus        91 ----N~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~  129 (655)
                          +...-.-+.|||.+||..++   .||+++||.+|+.+..
T Consensus       120 ~~d~~~~~ft~ditPliLAAh~Nn---yEil~~Ll~kg~~i~~  159 (822)
T KOG3609|consen  120 SGDANSPHFTPDITPLMLAAHLNN---FEILQCLLTRGHCIPI  159 (822)
T ss_pred             ccccCcccCCCCccHHHHHHHhcc---hHHHHHHHHcCCCCCC
Confidence                22223457899999999999   9999999999988753

>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type

Probab=92.79  E-value=0.073  Score=33.34  Aligned_cols=18  Identities=33%  Similarity=0.652  Sum_probs=15.7

Q ss_pred             cccCCCCCCCC-CCCCCCC
Q 006236          288 LCKDEIGCARK-VCFFAHK  305 (655)
Q Consensus       288 ~C~~~~~C~~~-~C~faH~  305 (655)
                      +|++|.+|+++ .|.|+|.
T Consensus         1 ~Ck~~~~C~~~~~C~f~HP   19 (19)
T PF14608_consen    1 PCKFGPNCTNGDNCPFSHP   19 (19)
T ss_pred             CCcCcCCCCCCCcCccCCc
Confidence            59999999988 7999994

>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]

Probab=90.44  E-value=0.12  Score=57.68  Aligned_cols=57  Identities=26%  Similarity=0.461  Sum_probs=39.8

Q ss_pred             CcCCCCCccCC---CCCCCCcccccCCcccccc--CCcccccccccCC---CCCCCCC-CCCC--CCCCC
Q 006236          250 TCVPCPEFRKG---ACPKGDGCEYAHGVFESWL--HPAQYRTRLCKDE---IGCARKV-CFFA--HKPEE  308 (655)
Q Consensus       250 s~~~CP~~rkg---~C~~Gd~C~yaH~~~E~~~--HP~~ykt~~C~~~---~~C~~~~-C~fa--H~~~e  308 (655)
                      .-..||..-.|   .|.+||+|.|-|+..-+..  -|.+-  --|.-|   |.|++|+ |.|+  |-..|
T Consensus        75 ~n~LCPsli~g~~~~C~f~d~Crf~HDi~ayLatK~~Dig--~~Cp~f~s~G~Cp~G~~CRFl~aHld~~  142 (614)
T KOG2333|consen   75 QNRLCPSLIQGDISKCSFGDNCRFVHDIEAYLATKAPDIG--PSCPVFESLGFCPYGFKCRFLGAHLDIE  142 (614)
T ss_pred             hhccChHhhcCCCccCcccccccccccHHHHHhccCcccC--CccceeeccccCCccceeehhhcccCcc
Confidence            45689988665   8999999999999543322  13332  236655   9999997 9996  54444

>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]

Probab=89.52  E-value=0.2  Score=54.02  Aligned_cols=26  Identities=38%  Similarity=0.842  Sum_probs=22.0

Q ss_pred             CCCcCCCCCccCCCCCCCCcccccCC
Q 006236          248 PYTCVPCPEFRKGACPKGDGCEYAHG  273 (655)
Q Consensus       248 ~Ys~~~CP~~rkg~C~~Gd~C~yaH~  273 (655)
                      .+..+.|..+..|.|..||.|.|.|.
T Consensus        74 ~~~~~vcK~~l~glC~kgD~C~Flhe   99 (325)
T KOG1040|consen   74 SRGKVVCKHWLRGLCKKGDQCEFLHE   99 (325)
T ss_pred             cCCceeehhhhhhhhhccCcCcchhh
Confidence            45567899999999999999999994

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=88.65  E-value=1.5  Score=44.97  Aligned_cols=95  Identities=15%  Similarity=0.166  Sum_probs=68.4

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCC---CccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCC-CCCccc---CCCCC
Q 006236           63 ERTPIMIAAMFGSVAVLKYVIETGK---VNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS-ADVNCV---DVYGN  135 (655)
Q Consensus        63 G~TPLh~AA~~G~~evvk~LL~~G~---aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~G-ADvn~~---D~~G~  135 (655)
                      -.++|-+|...+..+++-+||.+-.   .|+-..  ..+.--+-|+..... ....|+++.|.+| +++|..   -..|.
T Consensus       179 A~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~--~~~~ydieY~LS~h~-a~~kvL~~Fi~~Glv~vN~~F~~~NSGd  255 (284)
T PF06128_consen  179 AHQAMWLSIGNAKEDVALYLLSKFNFTKQDVASM--EKELYDIEYLLSEHS-ASYKVLEYFINRGLVDVNKKFQKVNSGD  255 (284)
T ss_pred             HHHHHHHHhcccHHHHHHHHHhhcceecchhhhc--CcchhhHHHHHhhcC-CcHHHHHHHHhccccccchhhhccCCcc
Confidence            4578888888888999999998631   233221  223334555544322 2478999999998 888844   55799


Q ss_pred             CccchhhhccCCCCcChHHHHHHHHhCCCCC
Q 006236          136 KPVDLIPVAMKSPLHSRKRAIELLLKGDHTI  166 (655)
Q Consensus       136 TPLhlAa~~~~~~~~g~~eivelLL~~GAdi  166 (655)
                      |-|+-|++      .++.+++.+||++||-.
T Consensus       256 tMLDNA~K------y~~~emi~~Llk~GA~~  280 (284)
T PF06128_consen  256 TMLDNAMK------YKNSEMIAFLLKYGAIS  280 (284)
T ss_pred             hHHHhHHh------cCcHHHHHHHHHcCccc
Confidence            99999987      89999999999999844

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]

Probab=88.52  E-value=0.23  Score=50.07  Aligned_cols=47  Identities=30%  Similarity=0.740  Sum_probs=37.6

Q ss_pred             CCCCCccCCCCCCCCcccccCCccccccCCcccccccccCC--CCCCCCCCCCCCC
Q 006236          252 VPCPEFRKGACPKGDGCEYAHGVFESWLHPAQYRTRLCKDE--IGCARKVCFFAHK  305 (655)
Q Consensus       252 ~~CP~~rkg~C~~Gd~C~yaH~~~E~~~HP~~ykt~~C~~~--~~C~~~~C~faH~  305 (655)
                      .+||.|..|.|.....|...|--     .|.  +.--|++|  |.|+.+.|.|.|-
T Consensus       234 ticpkflngrcnkaedcnlshel-----dpr--ripacryfllgkcnnpncryvhi  282 (377)
T KOG1492|consen  234 TICPKFLNGRCNKAEDCNLSHEL-----DPR--RIPACRYFLLGKCNNPNCRYVHI  282 (377)
T ss_pred             ccChHHhcCccCchhcCCccccc-----Ccc--ccchhhhhhhccCCCCCceEEEE
Confidence            58999999999999999999862     231  22259999  9999989999884

>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]

Probab=88.50  E-value=0.64  Score=53.65  Aligned_cols=41  Identities=24%  Similarity=0.514  Sum_probs=28.7

Q ss_pred             cccccCCccc----cccCCccc----ccccccCCCCCCCCCCCCCCCCC
Q 006236          267 GCEYAHGVFE----SWLHPAQY----RTRLCKDEIGCARKVCFFAHKPE  307 (655)
Q Consensus       267 ~C~yaH~~~E----~~~HP~~y----kt~~C~~~~~C~~~~C~faH~~~  307 (655)
                      .|.|.|+.--    +-.-|..+    -+.+|+++++|..-.|.|.|-..
T Consensus       598 DC~~sH~~~~~pvq~t~ip~~~~~~ti~~~CrY~pnCrnm~C~F~HPk~  646 (681)
T KOG3702|consen  598 DCNYSHAGRRIPVQPTRIPPPFPGGTIRGLCRYRPNCRNMQCKFYHPKT  646 (681)
T ss_pred             cCcccccCCCCCCccccCCCCCCCCCccccceeccCcCCccccccCCcc
Confidence            6889997322    12223333    46789999999999999999644

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	655
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		9e-07
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		9e-07
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		3e-06
2xee_A	157	Structural Determinants For Improved Thermal Stabil		3e-06
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-06
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		8e-06
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		1e-05
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		4e-05
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		5e-05
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		6e-05
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		7e-05
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		8e-05
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		1e-04
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		1e-04
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-04
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-04
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		3e-04
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		3e-04
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		5e-04
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-04
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		8e-04
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		8e-04

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 44/77 (57%), Gaps = 5/77 (6%)
Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
           RTP+ +AA  G + V+K ++E G  +VN A   +G T LH A     N   EVVKLLL A
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAG-ADVN-AKDKNGRTPLHLA---ARNGHLEVVKLLLEA 57
Query: 124 SADVNCVDVYGNKPVDL 140
            ADVN  D  G  P+ L
Sbjct: 58  GADVNAKDKNGRTPLHL 74

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 44/77 (57%), Gaps = 5/77 (6%)
Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
           RTP+ +AA  G + V+K ++E G  +VN A   +G T LH A     N   EVVKLLL A
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAG-ADVN-AKDKNGRTPLHLA---ARNGHLEVVKLLLEA 57
Query: 124 SADVNCVDVYGNKPVDL 140
            ADVN  D  G  P+ L
Sbjct: 58  GADVNAKDKNGRTPLHL 74

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 65  TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
           TP+ +AA  G + +++ +++ G  +VN A   DG+T LH A   G     E+V++LL A 
Sbjct: 70  TPLHLAAREGHLEIVEVLLKAG-ADVN-AKDKDGYTPLHLAAREG---HLEIVEVLLKAG 124
Query: 125 ADVNCVDVYGNKPVDL 140
           ADVN  D +G  P DL
Sbjct: 125 ADVNAQDKFGKTPFDL 140

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 65  TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
           TP+ +AA  G + +++ +++ G  +VN A   DG+T LH A   G     E+V++LL A 
Sbjct: 70  TPLHLAAREGHLEIVEVLLKAG-ADVN-AKDKDGYTPLHLAAREG---HLEIVEVLLKAG 124
Query: 125 ADVNCVDVYGNKPVDL 140
           ADVN  D +G  P DL
Sbjct: 125 ADVNAQDKFGKTPFDL 140

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 41/98 (41%), Positives = 51/98 (52%), Gaps = 11/98 (11%)
Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
           RTP+  AA  G   V+K +I  G  +VN A  SDG T LH A   G     EVVKLL+S 
Sbjct: 71  RTPLHHAAENGHKEVVKLLISKG-ADVN-AKDSDGRTPLHHAAENGHK---EVVKLLISK 125
Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLK 161
            ADVN  D  G  P+DL      +  H  +  ++LL K
Sbjct: 126 GADVNTSDSDGRTPLDL------AREHGNEEVVKLLEK 157

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 35/77 (45%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
           RTP+  AA  G   ++K +I  G  +VN A  SDG T LH A   G     E+VKLL+S 
Sbjct: 71  RTPLHYAAKEGHKEIVKLLISKG-ADVN-AKDSDGRTPLHYAAKEGHK---EIVKLLISK 125
Query: 124 SADVNCVDVYGNKPVDL 140
            ADVN  D  G  P+DL
Sbjct: 126 GADVNTSDSDGRTPLDL 142

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 8/86 (9%)
Query: 55  GSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSF 114
            + KMG    TP+ +AA++G + +++ +++ G  +VN A  + GFT LH A   G     
Sbjct: 75  AADKMG---DTPLHLAALYGHLEIVEVLLKNG-ADVN-ATDTYGFTPLHLAADAG---HL 126
Query: 115 EVVKLLLSASADVNCVDVYGNKPVDL 140
           E+V++LL   ADVN  D +G    D+
Sbjct: 127 EIVEVLLKYGADVNAQDKFGKTAFDI 152

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 65  TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
           TP+ +AA  G   +++ +++ G  +VN A  +DG+T LH A     N   E+V++LL   
Sbjct: 49  TPLHLAAWIGHPEIVEVLLKHG-ADVN-ARDTDGWTPLHLA---ADNGHLEIVEVLLKYG 103
Query: 125 ADVNCVDVYGNKPVDL 140
           ADVN  D YG  P+ L
Sbjct: 104 ADVNAQDAYGLTPLHL 119

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 65  TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
           TP+ +AA +G + +++ +++ G  +VN A  SDG T LH A   G     E+V++LL   
Sbjct: 82  TPLHLAAYWGHLEIVEVLLKNG-ADVN-AMDSDGMTPLHLAAKWG---YLEIVEVLLKHG 136
Query: 125 ADVNCVDVYGNKPVDL 140
           ADVN  D +G    D+
Sbjct: 137 ADVNAQDKFGKTAFDI 152

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/97 (32%), Positives = 53/97 (54%), Gaps = 11/97 (11%)
Query: 65  TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
           TP+ +AA +G + +++ +++ G  +VN A    G T LH A   G     E+V++LL   
Sbjct: 49  TPLHLAATYGHLEIVEVLLKHG-ADVN-AIDIXGSTPLHLAALIG---HLEIVEVLLKHG 103
Query: 125 ADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLK 161
           ADVN VD +G+ P+ L      + +      +E+LLK
Sbjct: 104 ADVNAVDTWGDTPLHL------AAIMGHLEIVEVLLK 134

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 65  TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
           TP+ +AA  G + +++ +++ G  +VN A   DG+T LH A   G     E+V++LL A 
Sbjct: 82  TPLHLAAREGHLEIVEVLLKAG-ADVN-AKDKDGYTPLHLAAREG---HLEIVEVLLKAG 136
Query: 125 ADVNCVDVYGNKPVDL 140
           ADVN  D +G    D+
Sbjct: 137 ADVNAQDKFGKTAFDI 152

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 18/107 (16%)
Query: 34  REIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA 93
           R +   G DV+   +W               TP+ +AAM G + +++ +++ G  +VN A
Sbjct: 31  RILTANGADVNANDYW-------------GHTPLHLAAMLGHLEIVEVLLKNG-ADVN-A 75
Query: 94  CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDL 140
            G+ G T LH A         E+V++LL   ADVN  D +G    D+
Sbjct: 76  TGNTGRTPLHLAAWA---DHLEIVEVLLKHGADVNAQDKFGKTAFDI 119

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/97 (32%), Positives = 53/97 (54%), Gaps = 11/97 (11%)
Query: 65  TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
           TP+ +AA +G + +++ +++ G  +VN A    G T LH A   G     E+V++LL   
Sbjct: 49  TPLHLAATYGHLEIVEVLLKHG-ADVN-AIDIMGSTPLHLAALIG---HLEIVEVLLKHG 103
Query: 125 ADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLK 161
           ADVN VD +G+ P+ L      + +      +E+LLK
Sbjct: 104 ADVNAVDTWGDTPLHL------AAIMGHLEIVEVLLK 134

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 7/77 (9%)
Query: 65  TPIMIAAMFGSVAVLKYVIETG-KVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
           TP+ +AA+FG + +++ +++ G  VN N     +G T LH A   G     E+V++LL  
Sbjct: 82  TPLRLAALFGHLEIVEVLLKNGADVNANDM---EGHTPLHLAAMFG---HLEIVEVLLKN 135
Query: 124 SADVNCVDVYGNKPVDL 140
            ADVN  D +G    D+
Sbjct: 136 GADVNAQDKFGKTAFDI 152

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 65  TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
           TP+ +AA  G + +++ +++ G  +VN A  S GFT LH A   G     E+V++LL   
Sbjct: 82  TPLHLAARRGHLEIVEVLLKNG-ADVN-ASDSHGFTPLHLAAKRG---HLEIVEVLLKNG 136
Query: 125 ADVNCVDVYGNKPVDL 140
           ADVN  D +G    D+
Sbjct: 137 ADVNAQDKFGKTAFDI 152

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/77 (44%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
           +TP+ +AA  G   V+K ++  G  + N A  SDG T LH A   G     EVVKLLLS 
Sbjct: 71  KTPLHLAAENGHKEVVKLLLSQG-ADPN-AKDSDGKTPLHLAAENGHK---EVVKLLLSQ 125
Query: 124 SADVNCVDVYGNKPVDL 140
            AD N  D  G  P+DL
Sbjct: 126 GADPNTSDSDGRTPLDL 142

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 65  TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
           TP+ +AA FG + +++ +++ G  +VN A   +G T LH A   G     E+V++LL   
Sbjct: 82  TPLHLAAHFGHLEIVEVLLKNG-ADVN-AKDDNGITPLHLAANRG---HLEIVEVLLKYG 136
Query: 125 ADVNCVDVYGNKPVDL 140
           ADVN  D +G    D+
Sbjct: 137 ADVNAQDKFGKTAFDI 152

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/97 (34%), Positives = 51/97 (52%), Gaps = 11/97 (11%)
Query: 65  TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
           TP+ +AA  G + +++ +++ G  +VN A  S G T LH A   G     E+V++LL   
Sbjct: 41  TPLHLAAANGQLEIVEVLLKNG-ADVN-ASDSAGITPLHLAAYDG---HLEIVEVLLKHG 95
Query: 125 ADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLK 161
           ADVN  D  G  P+ L      + L  +   +E+LLK
Sbjct: 96  ADVNAYDRAGWTPLHL------AALSGQLEIVEVLLK 126

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 65  TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
           TP+ +AA+ G + +++ +++ G  +V+ A    GFT LH A   G     E+V++LL   
Sbjct: 49  TPLHLAAVSGHLEIVEVLLKHG-ADVD-AADVYGFTPLHLAAMTG---HLEIVEVLLKYG 103
Query: 125 ADVNCVDVYGNKPVDL 140
           ADVN  D+ G+ P+ L
Sbjct: 104 ADVNAFDMTGSTPLHL 119

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/77 (42%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
           RTP+  AA  G   ++K ++  G  + N A  SDG T LH A   G     E+VKLLLS 
Sbjct: 71  RTPLHYAAENGHKEIVKLLLSKG-ADPN-AKDSDGRTPLHYAAENGHK---EIVKLLLSK 125
Query: 124 SADVNCVDVYGNKPVDL 140
            AD N  D  G  P+DL
Sbjct: 126 GADPNTSDSDGRTPLDL 142

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 65  TPIMIAAMFGSVAVLKYVIETG-KVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
           TP+ +AA  G + V++ +++ G  VN N     +GFT LH A   G     E+V++LL  
Sbjct: 82  TPLHLAADRGHLEVVEVLLKNGADVNAN---DHNGFTPLHLAANIG---HLEIVEVLLKH 135
Query: 124 SADVNCVDVYGNKPVDL 140
            ADVN  D +G    D+
Sbjct: 136 GADVNAQDKFGKTAFDI 152

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 65  TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
           TP+ +AA  G + +++ +++ G  +VN A  +DG T LH A   G     E+V++LL   
Sbjct: 82  TPLHLAAATGHLEIVEVLLKHG-ADVN-AYDNDGHTPLHLAAKYG---HLEIVEVLLKHG 136
Query: 125 ADVNCVDVYGNKPVDL 140
           ADVN  D +G    D+
Sbjct: 137 ADVNAQDKFGKTAFDI 152

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	655
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	9e-20
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	2e-19
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-17
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	5e-14
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	8e-12
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	7e-05
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-04
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-17
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-15
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-13
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-12
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	9e-06
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-17
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-16
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-15
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-17
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-14
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-13
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-10
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-08
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-17
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-16
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-15
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-13
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-13
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-11
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-10
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-07
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-17
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-15
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-15
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-14
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-13
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-08
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-08
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	8e-17
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-16
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-14
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-13
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-09
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-09
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	9e-17
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-16
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-15
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-15
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-10
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	9e-10
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-16
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-16
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-15
3v30_A	172	DNA-binding protein rfxank; structural genomics co	6e-15
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-04
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-16
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	6e-16
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-15
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-12
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-07
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-16
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-16
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-16
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-13
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-06
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-16
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-16
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-16
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-16
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	9e-15
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-12
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-16
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	6e-16
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	8e-12
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-07
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-16
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-14
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-14
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	9e-13
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-11
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	9e-11
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-16
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	8e-15
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-08
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-16
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-11
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	9e-09
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-16
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	5e-15
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-13
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-06
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	6e-16
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	9e-16
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	9e-09
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	8e-07
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	7e-16
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-15
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-14
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	6e-09
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-06
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	9e-16
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-14
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-08
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	9e-16
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-15
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-14
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-10
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-15
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-15
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-15
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-15
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-15
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-15
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-14
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-10
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-09
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-15
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-14
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-14
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	9e-07
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-15
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-15
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-14
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	6e-14
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	6e-09
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-06
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-15
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	8e-15
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-09
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-05
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-15
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-13
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-12
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-08
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-15
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	4e-13
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-11
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-09
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-15
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-13
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-12
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	8e-11
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	5e-07
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-15
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-12
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-15
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-15
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	5e-15
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-14
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-11
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	8e-09
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-15
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-13
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	5e-13
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	8e-09
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-15
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	7e-15
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-14
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-09
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-08
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-15
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-13
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-10
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-15
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-15
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	8e-09
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-15
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	8e-14
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	5e-11
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-07
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-15
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	5e-15
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	9e-15
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	5e-09
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	6e-15
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	6e-15
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-09
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-09
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	9e-15
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-14
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	7e-13
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-11
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-10
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-10
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-14
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-12
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-12
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-04
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-14
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-14
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-11
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	8e-11
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-09
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-08
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-14
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-14
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-14
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-12
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-11
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-10
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	9e-14
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-11
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-08
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-06
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-06
2etb_A	256	Transient receptor potential cation channel subfam	2e-13
2etb_A	256	Transient receptor potential cation channel subfam	2e-09
2etb_A	256	Transient receptor potential cation channel subfam	4e-09
2etb_A	256	Transient receptor potential cation channel subfam	2e-08
2pnn_A	273	Transient receptor potential cation channel subfa	7e-13
2pnn_A	273	Transient receptor potential cation channel subfa	9e-10
2pnn_A	273	Transient receptor potential cation channel subfa	4e-09
2pnn_A	273	Transient receptor potential cation channel subfa	4e-04
2pnn_A	273	Transient receptor potential cation channel subfa	7e-04
2rfa_A	232	Transient receptor potential cation channel subfa	9e-13
2rfa_A	232	Transient receptor potential cation channel subfa	4e-12
2rfa_A	232	Transient receptor potential cation channel subfa	1e-11
2rfa_A	232	Transient receptor potential cation channel subfa	2e-10
2rfa_A	232	Transient receptor potential cation channel subfa	3e-10
2rfa_A	232	Transient receptor potential cation channel subfa	3e-06
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	9e-12
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-11
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-10
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	5e-10
2rpp_A	89	Muscleblind-like protein 2; zinc finger domain, C3	2e-11
3jxi_A	260	Vanilloid receptor-related osmotically activated p	5e-11
3jxi_A	260	Vanilloid receptor-related osmotically activated p	6e-10
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-08
3jxi_A	260	Vanilloid receptor-related osmotically activated p	5e-04
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	6e-11
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-09
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-07
2rhk_C	72	Cleavage and polyadenylation specificity factor su	1e-10
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-10
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	8e-09
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	6e-08
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-05
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-04
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	4e-04
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	3e-10
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	3e-10
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	1e-08
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	1e-06
2lhn_A	80	Nuclear polyadenylated RNA-binding protein NAB2; n	2e-05
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	4e-05
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	5e-04
2d9m_A	69	Zinc finger CCCH-type domain containing protein 7A	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	3e-04
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	3e-04
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	5e-04

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A Length = 70

 Score = 82.8 bits (204), Expect = 9e-20
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 254 CPEFRKGACPKGDG-CEYAHGVFESWLHPAQYRTRLCKD--EIGCARKVCFFAHKPEELR 310
           C E+++G C +G+  C +AH    + +        +C D  +  C+R+ C + H P  L+
Sbjct: 9   CREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSREKCKYFHPPAHLQ 68

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 98

 Score = 83.0 bits (204), Expect = 2e-19
 Identities = 20/93 (21%), Positives = 37/93 (39%), Gaps = 5/93 (5%)

Query: 236 GENARRRDPRKYPYTCVPCPEFRKGACPKGDG-CEYAHGVFESWLHPAQYRTRLCKD--E 292
           G  A ++  R        C EF++G C +G+  C +AH    + +  +     +C D  +
Sbjct: 7   GSTATQKLLRTDKLEV--CREFQRGNCARGETDCRFAHPADSTMIDTSDNTVTVCMDYIK 64

Query: 293 IGCARKVCFFAHKPEELRPVYASTGSAMPSPSP 325
             C R+ C + H P  L+    +        + 
Sbjct: 65  GRCMREKCKYFHPPAHLQAKIKAAQHQANQAAV 97

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 81.1 bits (201), Expect = 2e-17
 Identities = 28/139 (20%), Positives = 47/139 (33%), Gaps = 37/139 (26%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
           RT ++  A  GS   ++ + E G  +++      G TALH A         EVV+ L+  
Sbjct: 78  RTALLFVAGLGSDKCVRLLAEAG-ADLDHRDMRGGLTALHMAAGYV---RPEVVEALVEL 133

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLH-----SRKRAIELLLK-------------GDHT 165
            AD+   D  G            + L       +       ++              +  
Sbjct: 134 GADIEVEDERG-----------LTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQ 182

Query: 166 IFEEEELVNIPVPQLSKDG 184
           +FE  E+  I    + K G
Sbjct: 183 VFEYAEVDEI----VEKRG 197

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 71.1 bits (175), Expect = 5e-14
 Identities = 27/103 (26%), Positives = 40/103 (38%), Gaps = 21/103 (20%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
            TP   AA       L  ++E   V+   A   +G TAL      G   S + V+LL  A
Sbjct: 46  ETPWWTAARKADEQALSQLLEDRDVD---AVDENGRTALLFVAGLG---SDKCVRLLAEA 99

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLLK 161
            AD++  D+ G            + LH      R   +E L++
Sbjct: 100 GADLDHRDMRGG----------LTALHMAAGYVRPEVVEALVE 132

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 64.5 bits (158), Expect = 8e-12
 Identities = 21/113 (18%), Positives = 33/113 (29%), Gaps = 26/113 (23%)

Query: 54  IGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSS 113
           IGS+  G E     +I    G              +V     S+  T    A        
Sbjct: 7   IGSRTAG-EGAMEYLIEWKDGHSPSWVPSSYIA-ADVV----SEYETPWWTAARKA---D 57

Query: 114 FEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLLK 161
            + +  LL    DV+ VD  G           ++ L         + + LL +
Sbjct: 58  EQALSQLLE-DRDVDAVDENG-----------RTALLFVAGLGSDKCVRLLAE 98

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 43.7 bits (104), Expect = 7e-05
 Identities = 12/84 (14%), Positives = 23/84 (27%), Gaps = 23/84 (27%)

Query: 84  ETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPV 143
           E  K+  +R    +G          G              +ADV                
Sbjct: 2   EVNKIIGSRT-AGEGAMEYLIEWKDG---HSPSWVPSSYIAADVVSEY------------ 45

Query: 144 AMKSPLHS-----RKRAIELLLKG 162
             ++P  +      ++A+  LL+ 
Sbjct: 46  --ETPWWTAARKADEQALSQLLED 67

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 7/89 (7%), Positives = 16/89 (17%), Gaps = 25/89 (28%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETG---------------------KVNVNRACGSDGFTAL 102
            T + +A            ++ G                        +    G  G    
Sbjct: 145 LTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRG-KGKDVE 203

Query: 103 HCAVAGGANSSFEVVKLLLSASADVNCVD 131
           +           +   +     A+    D
Sbjct: 204 YLVRWKD---GGDCEWVKGVHVAEDVAKD 229

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 79.5 bits (197), Expect = 2e-17
 Identities = 22/103 (21%), Positives = 37/103 (35%), Gaps = 20/103 (19%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
           RT ++  A  GS   ++ + E G  +++      G TALH A         EVV+ L+  
Sbjct: 77  RTALLFVAGLGSDKCVRLLAEAG-ADLDHRDMRGGLTALHMAAGYV---RPEVVEALVEL 132

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLH-----SRKRAIELLLK 161
            AD+   D  G            + L       +       ++
Sbjct: 133 GADIEVEDERG-----------LTALELAREILKTTPKGNPMQ 164

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 72.9 bits (180), Expect = 4e-15
 Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 21/103 (20%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
            TP   AA       L  ++E    +V+ A   +G TAL      G   S + V+LL  A
Sbjct: 45  ETPWWTAARKADEQALSQLLE--DRDVD-AVDENGRTALLFVAGLG---SDKCVRLLAEA 98

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLLK 161
            AD++  D+ G            + LH      R   +E L++
Sbjct: 99  GADLDHRDMRGG----------LTALHMAAGYVRPEVVEALVE 131

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 67.1 bits (165), Expect = 4e-13
 Identities = 21/116 (18%), Positives = 34/116 (29%), Gaps = 26/116 (22%)

Query: 51  GRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGA 110
            + IGS+  G E     +I    G              +V     S+  T    A     
Sbjct: 3   NKIIGSRTAG-EGAMEYLIEWKDGHSPSWVPSSYIA-ADVV----SEYETPWWTAARKA- 55

Query: 111 NSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLLK 161
               + +  LL    DV+ VD  G           ++ L         + + LL +
Sbjct: 56  --DEQALSQLLE-DRDVDAVDENG-----------RTALLFVAGLGSDKCVRLLAE 97

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 64.8 bits (159), Expect = 3e-12
 Identities = 17/95 (17%), Positives = 29/95 (30%), Gaps = 17/95 (17%)

Query: 38  EKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSD 97
           E G D+D      G             T + +AA +    V++ ++E G  ++       
Sbjct: 97  EAGADLDHRDMRGGL------------TALHMAAGYVRPEVVEALVELG-ADIE-VEDER 142

Query: 98  GFTALHCAVAGGANSSFEVVKLLLSASADVNCVDV 132
           G TAL  A               +     +    V
Sbjct: 143 GLTALELAREIL---KTTPKGNPMQFGRRIGLEKV 174

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 45.6 bits (109), Expect = 9e-06
 Identities = 12/84 (14%), Positives = 23/84 (27%), Gaps = 23/84 (27%)

Query: 84  ETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPV 143
           E  K+  +R    +G          G              +ADV                
Sbjct: 1   EVNKIIGSRT-AGEGAMEYLIEWKDG---HSPSWVPSSYIAADVVSEY------------ 44

Query: 144 AMKSPLHS-----RKRAIELLLKG 162
             ++P  +      ++A+  LL+ 
Sbjct: 45  --ETPWWTAARKADEQALSQLLED 66

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 79.8 bits (198), Expect = 3e-17
 Identities = 21/105 (20%), Positives = 42/105 (40%), Gaps = 19/105 (18%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGA--NSSFEVVKLLL 121
              ++ AA  G +  +K ++E G+ +++      G+TAL  AV          ++VKLL+
Sbjct: 107 GNALIPAAEKGHIDNVKLLLEDGREDID-FQNDFGYTALIEAVGLREGNQLYQDIVKLLM 165

Query: 122 SASADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLLK 161
              AD +  D  G           ++ +            ++L +
Sbjct: 166 ENGADQSIKDNSG-----------RTAMDYANQKGYTEISKILAQ 199

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 75.9 bits (188), Expect = 6e-16
 Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 8/100 (8%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
            +P + A   G   +L Y+++    ++N      G  AL  A   G     + VKLLL  
Sbjct: 73  DSPYLYAGAQGRTEILAYMLKHATPDLN-KHNRYGGNALIPAAEKG---HIDNVKLLLED 128

Query: 124 -SADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAI-ELLLK 161
              D++  + +G     LI        +   + I +LL++
Sbjct: 129 GREDIDFQNDFGYTA--LIEAVGLREGNQLYQDIVKLLME 166

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 74.4 bits (184), Expect = 2e-15
 Identities = 21/105 (20%), Positives = 36/105 (34%), Gaps = 21/105 (20%)

Query: 62  EERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLL 121
           E    +  A    +  V + + +T    V+    ++G T L+ AV        E+ K L+
Sbjct: 5   EVGALLEAANQRDTKKVKEILQDTT-YQVD-EVDTEGNTPLNIAVHNN---DIEIAKALI 59

Query: 122 SASADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLLK 161
              AD+N  +               SP        R   +  +LK
Sbjct: 60  DRGADINLQNSIS-----------DSPYLYAGAQGRTEILAYMLK 93

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 80.2 bits (199), Expect = 5e-17
 Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 20/103 (19%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
           RTP+  A    +  V + +I     +++ A   DG T L  A          +++ L+++
Sbjct: 91  RTPLHAAVSADAQGVFQILIRNRATDLD-ARMHDGTTPLILAARLA---VEGMLEDLINS 146

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLLK 161
            ADVN VD  G           KS LH         A  +LLK
Sbjct: 147 HADVNAVDDLG-----------KSALHWAAAVNNVDAAVVLLK 178

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 72.5 bits (179), Expect = 2e-14
 Identities = 19/102 (18%), Positives = 34/102 (33%), Gaps = 21/102 (20%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
           ++ +  AA   +V     +++ G  N +    +   T L  A   G   S+E  K+LL  
Sbjct: 158 KSALHWAAAVNNVDAAVVLLKNG-ANKD-MQNNREETPLFLAAREG---SYETAKVLLDH 212

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLL 160
            A+ +  D              + P            + LL 
Sbjct: 213 FANRDITDHMD-----------RLPRDIAQERMHHDIVRLLD 243

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 68.6 bits (169), Expect = 5e-13
 Identities = 31/115 (26%), Positives = 46/115 (40%), Gaps = 33/115 (28%)

Query: 64  RTPIMIAAMFG-------------SVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGA 110
            TP+MIA+  G             + AV+   I  G  +++      G TALH A     
Sbjct: 11  FTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQG-ASLHNQTDRTGETALHLAAR--- 66

Query: 111 NSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLL 160
            S  +  K LL ASAD N  D  G           ++PLH+      +   ++L+
Sbjct: 67  YSRSDAAKRLLEASADANIQDNMG-----------RTPLHAAVSADAQGVFQILI 110

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 59.8 bits (146), Expect = 4e-10
 Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 5/66 (7%)

Query: 63  ERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLS 122
           E TP+ +AA  GS    K +++    N +             A         ++V+LL  
Sbjct: 190 EETPLFLAAREGSYETAKVLLDHF-ANRD-ITDHMDRLPRDIAQ---ERMHHDIVRLLDL 244

Query: 123 ASADVN 128
                +
Sbjct: 245 EHHHHH 250

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 54.8 bits (133), Expect = 2e-08
 Identities = 22/89 (24%), Positives = 31/89 (34%), Gaps = 28/89 (31%)

Query: 88  VNVNRACGSDGFTALHCAVAGGA----------NSSFEVVKLLLSASADV-NCVDVYGNK 136
           ++VN   G DGFT L  A   G             +  V+   +   A + N  D  G  
Sbjct: 1   MDVN-VRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTG-- 57

Query: 137 PVDLIPVAMKSPLH-----SRKRAIELLL 160
                    ++ LH     SR  A + LL
Sbjct: 58  ---------ETALHLAARYSRSDAAKRLL 77

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 81.8 bits (203), Expect = 6e-17
 Identities = 27/105 (25%), Positives = 39/105 (37%), Gaps = 21/105 (20%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
             P+  A  +G   V + +++ G   VN A     FT LH A +       EV  LLLS 
Sbjct: 92  LVPLHNACSYGHYEVTELLLKHG-ACVN-AMDLWQFTPLHEAASKN---RVEVCSLLLSH 146

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLLKGD 163
            AD   V+ +G           KS +        +  +    KG 
Sbjct: 147 GADPTLVNCHG-----------KSAVDMAPTPELRERLTYEFKGH 180

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 79.5 bits (197), Expect = 4e-16
 Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 16/97 (16%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
            TP+ +AA      V++ + + G   +N A  S G TALH A   G     +  +LLLS 
Sbjct: 248 MTPLHVAAERAHNDVMEVLHKHG-AKMN-ALDSLGQTALHRAALAG---HLQTCRLLLSY 302

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLL 160
            +D + + + G            +       A++ +L
Sbjct: 303 GSDPSIISLQG-----------FTAAQMGNEAVQQIL 328

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 77.9 bits (193), Expect = 1e-15
 Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 21/102 (20%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
            TP+ +AA +  V +++ +++ G  +V+ A    G   LH A + G    +EV +LLL  
Sbjct: 59  STPLHLAAGYNRVRIVQLLLQHG-ADVH-AKDKGGLVPLHNACSYG---HYEVTELLLKH 113

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLL 160
            A VN +D++             +PLH      R     LLL
Sbjct: 114 GACVNAMDLWQ-----------FTPLHEAASKNRVEVCSLLL 144

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 70.2 bits (173), Expect = 3e-13
 Identities = 23/106 (21%), Positives = 36/106 (33%), Gaps = 24/106 (22%)

Query: 64  RTPIMIAAMFG---SVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLL 120
            T +  A          V + ++  G  NVN     D  T LH A         +V+++L
Sbjct: 212 ETALHCAVASLHPKRKQVAELLLRKG-ANVN-EKNKDFMTPLHVAAERA---HNDVMEVL 266

Query: 121 LSASADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLLK 161
               A +N +D  G           ++ LH        +   LLL 
Sbjct: 267 HKHGAKMNALDSLG-----------QTALHRAALAGHLQTCRLLLS 301

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 69.1 bits (170), Expect = 8e-13
 Identities = 27/106 (25%), Positives = 43/106 (40%), Gaps = 19/106 (17%)

Query: 61  FEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLL 120
           F+  + +  AA    +A +K  +    +N  +       TALHCAVA       +V +LL
Sbjct: 177 FKGHSLLQ-AAREADLAKVKKTLALEIINFKQ--PQSHETALHCAVASLHPKRKQVAELL 233

Query: 121 LSASADVNCVDVYGNKPVDLIPVAMKSPLH-----SRKRAIELLLK 161
           L   A+VN  +               +PLH     +    +E+L K
Sbjct: 234 LRKGANVNEKNKDF-----------MTPLHVAAERAHNDVMEVLHK 268

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 63.7 bits (156), Expect = 5e-11
 Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 10/71 (14%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
           +T +  AA+ G +   + ++  G  + +      GFTA             E V+ +LS 
Sbjct: 281 QTALHRAALAGHLQTCRLLLSYG-SDPS-IISLQGFTAAQMGN--------EAVQQILSE 330

Query: 124 SADVNCVDVYG 134
           S  +   DV  
Sbjct: 331 STPMRTSDVDY 341

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 61.7 bits (151), Expect = 2e-10
 Identities = 22/118 (18%), Positives = 34/118 (28%), Gaps = 23/118 (19%)

Query: 62  EERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGG------------ 109
            + TP+  AA    V V   ++  G  +        G +A+  A                
Sbjct: 123 WQFTPLHEAASKNRVEVCSLLLSHG-ADPT-LVNCHGKSAVDMAPTPELRERLTYEFKGH 180

Query: 110 ------ANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLK 161
                   +    VK  L+                 L   A+ S    RK+  ELLL+
Sbjct: 181 SLLQAAREADLAKVKKTLALEIINFKQPQSHETA--LH-CAVASLHPKRKQVAELLLR 235

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 52.1 bits (126), Expect = 3e-07
 Identities = 17/94 (18%), Positives = 32/94 (34%), Gaps = 22/94 (23%)

Query: 73  FGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDV 132
           FG  A+   + +          G      L  A    + +  +++ LL   + + +  D 
Sbjct: 3   FGKSALD--LADPS-AKAV-LTGEYKKDELLEAAR--SGNEEKLMALLTPLNVNCHASDG 56

Query: 133 YGNKPVDLIPVAMKSPLHS-----RKRAIELLLK 161
                         +PLH      R R ++LLL+
Sbjct: 57  RK-----------STPLHLAAGYNRVRIVQLLLQ 79

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 80.2 bits (199), Expect = 8e-17
 Identities = 28/103 (27%), Positives = 40/103 (38%), Gaps = 21/103 (20%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
            +P+  AA+ G    L+ +I  G   VN    +D  + LH A  GG       VK+LL  
Sbjct: 60  WSPMHEAAIHGHQLSLRNLISQG-WAVN-IITADHVSPLHEACLGG---HLSCVKILLKH 114

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLLK 161
            A VN V                +PL +         + LLL+
Sbjct: 115 GAQVNGVTADW-----------HTPLFNACVSGSWDCVNLLLQ 146

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 78.7 bits (195), Expect = 3e-16
 Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 13/98 (13%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
            TP+ +A      A +K ++E+G  +VN+       + LH  V      S E+  LL+  
Sbjct: 191 GTPLYLACENQQRACVKKLLESG-ADVNQGK--GQDSPLHAVVRTA---SEELACLLMDF 244

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLK 161
            AD    +  G +PV+L  V  +SPL     A   L +
Sbjct: 245 GADTQAKNAEGKRPVEL--VPPESPL-----AQLFLER 275

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 72.9 bits (180), Expect = 2e-14
 Identities = 19/102 (18%), Positives = 40/102 (39%), Gaps = 22/102 (21%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
            TP+  A + GS   +  +++ G  +V     SD  + +H A   G     E V  L++ 
Sbjct: 126 HTPLFNACVSGSWDCVNLLLQHG-ASVQPE--SDLASPIHEAARRG---HVECVNSLIAY 179

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLL 160
             +++    +             +PL+      ++  ++ LL
Sbjct: 180 GGNIDHKISHL-----------GTPLYLACENQQRACVKKLL 210

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 69.8 bits (172), Expect = 2e-13
 Identities = 27/105 (25%), Positives = 38/105 (36%), Gaps = 22/105 (20%)

Query: 62  EERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLL 121
           +  +PI  AA  G V  +  +I  G  N++    S   T L+ A           VK LL
Sbjct: 156 DLASPIHEAARRGHVECVNSLIAYG-GNID-HKISHLGTPLYLACENQ---QRACVKKLL 210

Query: 122 SASADVNCVDVYGNKPVDLIPVAMKSPLH-----SRKRAIELLLK 161
            + ADVN                  SPLH     + +    LL+ 
Sbjct: 211 ESGADVNQGK-GQ-----------DSPLHAVVRTASEELACLLMD 243

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 59.0 bits (144), Expect = 1e-09
 Identities = 15/104 (14%), Positives = 33/104 (31%), Gaps = 22/104 (21%)

Query: 63  ERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLS 122
           ++  +  +   G        + +  +  +       ++ +H A   G       ++ L+S
Sbjct: 27  KQGGMDGSKPAGPRDFPGIRLLSNPLMGDAV---SDWSPMHEAAIHG---HQLSLRNLIS 80

Query: 123 ASADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLLK 161
               VN +                SPLH          +++LLK
Sbjct: 81  QGWAVNIITADH-----------VSPLHEACLGGHLSCVKILLK 113

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 58.3 bits (142), Expect = 2e-09
 Identities = 8/65 (12%), Positives = 19/65 (29%), Gaps = 6/65 (9%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
            +P+       S  +   +++ G  +   A  ++G   +          S      L   
Sbjct: 223 DSPLHAVVRTASEELACLLMDFG-ADTQ-AKNAEGKRPVELV----PPESPLAQLFLERE 276

Query: 124 SADVN 128
            A + 
Sbjct: 277 GASLP 281

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 79.0 bits (196), Expect = 9e-17
 Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 20/102 (19%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
            T + +AA  G   V++Y++  G+++VN      G+T +  A         ++VKLLLS 
Sbjct: 78  STCLHLAAKKGHYEVVQYLLSNGQMDVN-CQDDGGWTPMIWATEYK---HVDLVKLLLSK 133

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLL 160
            +D+N  D                 LH           E+LL
Sbjct: 134 GSDINIRDNEE-----------NICLHWAAFSGCVDIAEILL 164

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 77.5 bits (192), Expect = 4e-16
 Identities = 26/102 (25%), Positives = 39/102 (38%), Gaps = 21/102 (20%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
           R+P+  AA  G V +   +++ G  N++  C  D  T L  A         E VK L+ A
Sbjct: 12  RSPLHAAAEAGHVDICHMLVQAG-ANID-TCSEDQRTPLMEAAENN---HLEAVKYLIKA 66

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLL 160
            A V+  D  G            + LH          ++ LL
Sbjct: 67  GALVDPKDAEG-----------STCLHLAAKKGHYEVVQYLL 97

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 74.8 bits (185), Expect = 3e-15
 Identities = 22/105 (20%), Positives = 40/105 (38%), Gaps = 21/105 (20%)

Query: 62  EERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLL 121
           EE   +  AA  G V + + ++     +++ A    G + LH A        ++ V L L
Sbjct: 143 EENICLHWAAFSGCVDIAEILLAAK-CDLH-AVNIHGDSPLHIAAREN---RYDCVVLFL 197

Query: 122 SASADVNCVDVYGNKPVDLIPVAMKSPLH-----SRKRAIELLLK 161
           S  +DV   +  G           ++PL      S+  +   + K
Sbjct: 198 SRDSDVTLKNKEG-----------ETPLQCASLNSQVWSALQMSK 231

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 74.4 bits (184), Expect = 4e-15
 Identities = 24/102 (23%), Positives = 46/102 (45%), Gaps = 21/102 (20%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
            TP++ A  +  V ++K ++  G  ++N    ++    LH A   G     ++ ++LL+A
Sbjct: 112 WTPMIWATEYKHVDLVKLLLSKG-SDIN-IRDNEENICLHWAAFSG---CVDIAEILLAA 166

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLL 160
             D++ V+++G            SPLH      R   + L L
Sbjct: 167 KCDLHAVNIHG-----------DSPLHIAARENRYDCVVLFL 197

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 60.1 bits (147), Expect = 2e-10
 Identities = 14/63 (22%), Positives = 21/63 (33%), Gaps = 5/63 (7%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
            +P+ IAA       +   +     +V      +G T L CA     NS       +  A
Sbjct: 178 DSPLHIAARENRYDCVVLFLSRD-SDVT-LKNKEGETPLQCASL---NSQVWSALQMSKA 232

Query: 124 SAD 126
             D
Sbjct: 233 LQD 235

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 58.6 bits (143), Expect = 9e-10
 Identities = 13/79 (16%), Positives = 28/79 (35%), Gaps = 20/79 (25%)

Query: 88  VNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKS 147
           +N       +  + LH A   G     ++  +L+ A A+++                 ++
Sbjct: 2   MNFK-MEHQNKRSPLHAAAEAG---HVDICHMLVQAGANIDTCSEDQ-----------RT 46

Query: 148 PLHS-----RKRAIELLLK 161
           PL          A++ L+K
Sbjct: 47  PLMEAAENNHLEAVKYLIK 65

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 77.5 bits (192), Expect = 1e-16
 Identities = 23/87 (26%), Positives = 28/87 (32%), Gaps = 15/87 (17%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
              I   A  G +  LK  +  G   VN      GFT L  A A G     E V+ LL  
Sbjct: 3   SLSIHQLAAQGELDQLKEHLRKGDNLVN-KPDERGFTPLIWASAFG---EIETVRFLLEW 58

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLH 150
            AD + +                S L 
Sbjct: 59  GADPHILAKERE-----------SALS 74

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 75.1 bits (186), Expect = 5e-16
 Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 5/74 (6%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
            + + +A+  G   ++  ++E   V++N     +G T L  AV G      + V+ LL+ 
Sbjct: 70  ESALSLASTGGYTDIVGLLLERD-VDIN-IYDWNGGTPLLYAVRGN---HVKCVEALLAR 124

Query: 124 SADVNCVDVYGNKP 137
            AD+      G  P
Sbjct: 125 GADLTTEADSGYTP 138

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 74.4 bits (184), Expect = 1e-15
 Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 16/87 (18%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
            TP++ A+ FG +  +++++E G  + +     +  +AL  A  GG     ++V LLL  
Sbjct: 37  FTPLIWASAFGEIETVRFLLEWG-ADPH-ILAKERESALSLASTGG---YTDIVGLLLER 91

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLH 150
             D+N  D  G            +PL 
Sbjct: 92  DVDINIYDWNGG-----------TPLL 107

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 72.1 bits (178), Expect = 6e-15
 Identities = 17/100 (17%), Positives = 38/100 (38%), Gaps = 18/100 (18%)

Query: 38  EKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSD 97
           E+  D++    W G             TP++ A     V  ++ ++  G  ++       
Sbjct: 90  ERDVDINIYD-WNGG------------TPLLYAVRGNHVKCVEALLARG-ADLT-TEADS 134

Query: 98  GFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKP 137
           G+T +  AVA G     +V +++ +    +   ++    P
Sbjct: 135 GYTPMDLAVALG---YRKVQQVIENHILKLFQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 41.6 bits (99), Expect = 2e-04
 Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 4/41 (9%)

Query: 98  GFTALHCAVAGGANSSFEVVKLLLSASAD-VNCVDVYGNKP 137
              ++H   A G     + +K  L    + VN  D  G  P
Sbjct: 2   DSLSIHQLAAQG---ELDQLKEHLRKGDNLVNKPDERGFTP 39

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 77.1 bits (191), Expect = 1e-16
 Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 21/103 (20%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
            +P+  A   G  AV++ +I  G   +N        T LH A + G     ++V+ LL  
Sbjct: 40  FSPLHWACREGRSAVVEMLIMRG-ARIN-VMNRGDDTPLHLAASHG---HRDIVQKLLQY 94

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLLK 161
            AD+N V+ +GN            PLH      + +  E L+ 
Sbjct: 95  KADINAVNEHGN-----------VPLHYACFWGQDQVAEDLVA 126

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 75.2 bits (186), Expect = 6e-16
 Identities = 19/103 (18%), Positives = 39/103 (37%), Gaps = 20/103 (19%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
              I      G+   ++  ++  + ++N      GF+ LH A   G      VV++L+  
Sbjct: 6   MDDIFTQCREGNAVAVRLWLDNTENDLN-QGDDHGFSPLHWACREG---RSAVVEMLIMR 61

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLLK 161
            A +N ++               +PLH       +  ++ LL+
Sbjct: 62  GARINVMNRGD-----------DTPLHLAASHGHRDIVQKLLQ 93

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 72.9 bits (180), Expect = 4e-15
 Identities = 22/103 (21%), Positives = 41/103 (39%), Gaps = 21/103 (20%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
            TP+ +AA  G   +++ +++    ++N A    G   LH A   G     +V + L++ 
Sbjct: 73  DTPLHLAASHGHRDIVQKLLQYK-ADIN-AVNEHGNVPLHYACFWG---QDQVAEDLVAN 127

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLLK 161
            A V+  + YG           + P+       R+   E   K
Sbjct: 128 GALVSICNKYG-----------EMPVDKAKAPLRELLRERAEK 159

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 64.4 bits (158), Expect = 4e-12
 Identities = 11/72 (15%), Positives = 23/72 (31%), Gaps = 5/72 (6%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
             P+  A  +G   V + ++  G   V+  C   G   +  A A        + +     
Sbjct: 106 NVPLHYACFWGQDQVAEDLVANG-ALVS-ICNKYGEMPVDKAKAPL---RELLRERAEKM 160

Query: 124 SADVNCVDVYGN 135
             ++N +     
Sbjct: 161 GQNLNRIPYKDT 172

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 50.1 bits (121), Expect = 3e-07
 Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 20/71 (28%)

Query: 97  DGFTALHCAVAGGANSSFEVVKLLLSASA-DVNCVDVYGNKPVDLIPVAMKSPLHS---- 151
           +    +      G   +   V+L L  +  D+N  D +G            SPLH     
Sbjct: 4   EFMDDIFTQCREG---NAVAVRLWLDNTENDLNQGDDHG-----------FSPLHWACRE 49

Query: 152 -RKRAIELLLK 161
            R   +E+L+ 
Sbjct: 50  GRSAVVEMLIM 60

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 76.7 bits (190), Expect = 1e-16
 Identities = 23/103 (22%), Positives = 32/103 (31%), Gaps = 21/103 (20%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
              +   A  G +  L   IE     +N     +GFT L  A A G      VV+ LL  
Sbjct: 4   SLSVHQLAAQGEMLYLATRIEQE-NVIN-HTDEEGFTPLMWAAAHG---QIAVVEFLLQN 58

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLLK 161
            AD   +                S L           +++LL 
Sbjct: 59  GADPQLLGKGRE-----------SALSLACSKGYTDIVKMLLD 90

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 75.5 bits (187), Expect = 4e-16
 Identities = 20/103 (19%), Positives = 39/103 (37%), Gaps = 21/103 (20%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
            + + +A   G   ++K +++ G V+VN     +G T L  AV G      + VK+LL +
Sbjct: 70  ESALSLACSKGYTDIVKMLLDCG-VDVN-EYDWNGGTPLLYAVHGN---HVKCVKMLLES 124

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLLK 161
            AD       G            + +        +   +++  
Sbjct: 125 GADPTIETDSG-----------YNSMDLAVALGYRSVQQVIES 156

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 75.1 bits (186), Expect = 5e-16
 Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 16/87 (18%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
            TP+M AA  G +AV++++++ G  +     G    +AL  A + G     ++VK+LL  
Sbjct: 37  FTPLMWAAAHGQIAVVEFLLQNG-ADPQ-LLGKGRESALSLACSKG---YTDIVKMLLDC 91

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLH 150
             DVN  D  G            +PL 
Sbjct: 92  GVDVNEYDWNG-----------GTPLL 107

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 67.4 bits (166), Expect = 2e-13
 Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
            TP++ A     V  +K ++E+G  +        G+ ++  AVA G      V +++ S 
Sbjct: 103 GTPLLYAVHGNHVKCVKMLLESG-ADPT-IETDSGYNSMDLAVALG---YRSVQQVIESH 157

Query: 124 SADVN 128
              + 
Sbjct: 158 LLKLL 162

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 47.8 bits (115), Expect = 2e-06
 Identities = 11/70 (15%), Positives = 20/70 (28%), Gaps = 19/70 (27%)

Query: 97  DGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHS----- 151
               ++H   A G       +   +     +N  D  G            +PL       
Sbjct: 2   ANSLSVHQLAAQG---EMLYLATRIEQENVINHTDEEG-----------FTPLMWAAAHG 47

Query: 152 RKRAIELLLK 161
           +   +E LL+
Sbjct: 48  QIAVVEFLLQ 57

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 79.1 bits (196), Expect = 2e-16
 Identities = 34/129 (26%), Positives = 52/129 (40%), Gaps = 21/129 (16%)

Query: 38  EKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSD 97
           ++G +V+        +   +K G    T +M AA  G V VLK +++    +VN AC + 
Sbjct: 126 KRGANVNLRRKTKEDQERLRKGG---ATALMDAAEKGHVEVLKILLDEMGADVN-ACDNM 181

Query: 98  GFTALHCAVAGG-ANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHS----- 151
           G  AL  A+     +    +  LLL   ADVN     G           K+PL       
Sbjct: 182 GRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERG-----------KTPLILAVEKK 230

Query: 152 RKRAIELLL 160
               ++ LL
Sbjct: 231 HLGLVQRLL 239

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 79.1 bits (196), Expect = 2e-16
 Identities = 24/104 (23%), Positives = 40/104 (38%), Gaps = 20/104 (19%)

Query: 62  EERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLL 121
           E+   ++ A     V +++ ++E G  NVN      G+T LH AV        ++V+LLL
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGG-ANVNFQEEEGGWTPLHNAVQMS---REDIVELLL 59

Query: 122 SASADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLL 160
              AD       G            +P          + ++L L
Sbjct: 60  RHGADPVLRKKNG-----------ATPFLLAAIAGSVKLLKLFL 92

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 78.3 bits (194), Expect = 4e-16
 Identities = 23/103 (22%), Positives = 39/103 (37%), Gaps = 21/103 (20%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
            TP+  A       +++ ++  G  +       +G T    A   G   S +++KL LS 
Sbjct: 40  WTPLHNAVQMSREDIVELLLRHG-ADPV-LRKKNGATPFLLAAIAG---SVKLLKLFLSK 94

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLLK 161
            ADVN  D YG            +         + +A++ L K
Sbjct: 95  GADVNECDFYG-----------FTAFMEAAVYGKVKALKFLYK 126

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 78.3 bits (194), Expect = 4e-16
 Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 11/102 (10%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
            TP ++AA+ GSV +LK  +  G  +VN  C   GFTA   A   G     + +K L   
Sbjct: 73  ATPFLLAAIAGSVKLLKLFLSKG-ADVN-ECDFYGFTAFMEAAVYG---KVKALKFLYKR 127

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLL 160
            A+VN          + +     + L           +++LL
Sbjct: 128 GANVNLRRKTKED-QERLRKGGATALMDAAEKGHVEVLKILL 168

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 74.0 bits (183), Expect = 9e-15
 Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 4/69 (5%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
           +TP+++A     + +++ ++E   + +N    SDG TAL  AV        ++ +LL   
Sbjct: 220 KTPLILAVEKKHLGLVQRLLEQEHIEIN-DTDSDGKTALLLAVELK---LKKIAELLCKR 275

Query: 124 SADVNCVDV 132
            A  +C D+
Sbjct: 276 GASTDCGDL 284

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 66.7 bits (164), Expect = 3e-12
 Identities = 31/136 (22%), Positives = 48/136 (35%), Gaps = 39/136 (28%)

Query: 36  IEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSV----AVLKYVIETGKVNVN 91
           ++E G DV+              MG   R  ++ A +        A+   +++ G  +VN
Sbjct: 168 LDEMGADVNACD----------NMG---RNALIHALLSSDDSDVEAITHLLLDHG-ADVN 213

Query: 92  RACGSDGFTALHCAVAGGANSSFEVVKLLLSAS-ADVNCVDVYGNKPVDLIPVAMKSPLH 150
              G  G T L  AV         +V+ LL     ++N  D  G           K+ L 
Sbjct: 214 -VRGERGKTPLILAVEKK---HLGLVQRLLEQEHIEINDTDSDG-----------KTALL 258

Query: 151 S-----RKRAIELLLK 161
                  K+  ELL K
Sbjct: 259 LAVELKLKKIAELLCK 274

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 74.7 bits (185), Expect = 2e-16
 Identities = 39/103 (37%), Positives = 52/103 (50%), Gaps = 21/103 (20%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
           RTP+ +AA  G + V+K ++E G  +VN A   +G T LH A   G     EVVKLLL A
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAG-ADVN-AKDKNGRTPLHLAARNG---HLEVVKLLLEA 57

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLLK 161
            ADVN  D  G           ++PLH          ++LLL+
Sbjct: 58  GADVNAKDKNG-----------RTPLHLAARNGHLEVVKLLLE 89

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 73.5 bits (182), Expect = 6e-16
 Identities = 39/103 (37%), Positives = 52/103 (50%), Gaps = 21/103 (20%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
           RTP+ +AA  G + V+K ++E G  +VN A   +G T LH A   G     EVVKLLL A
Sbjct: 36  RTPLHLAARNGHLEVVKLLLEAG-ADVN-AKDKNGRTPLHLAARNG---HLEVVKLLLEA 90

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLLK 161
            ADVN  D  G           ++PLH          ++LLL+
Sbjct: 91  GADVNAKDKNG-----------RTPLHLAARNGHLEVVKLLLE 122

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 61.6 bits (151), Expect = 8e-12
 Identities = 28/62 (45%), Positives = 36/62 (58%), Gaps = 5/62 (8%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
           RTP+ +AA  G + V+K ++E G  +VN A   +G T LH A   G     EVVKLLL A
Sbjct: 69  RTPLHLAARNGHLEVVKLLLEAG-ADVN-AKDKNGRTPLHLAARNG---HLEVVKLLLEA 123

Query: 124 SA 125
            A
Sbjct: 124 GA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 49.3 bits (119), Expect = 2e-07
 Identities = 23/54 (42%), Positives = 26/54 (48%), Gaps = 14/54 (25%)

Query: 97  DGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLH 150
           +G T LH A   G     EVVKLLL A ADVN  D  G           ++PLH
Sbjct: 1   NGRTPLHLAARNG---HLEVVKLLLEAGADVNAKDKNG-----------RTPLH 40

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 77.5 bits (192), Expect = 2e-16
 Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 20/103 (19%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
           RTP+  A    +  V + +I     +++ A   DG T L  A          +++ L+++
Sbjct: 59  RTPLHAAVSADAQGVFQILIRNRATDLD-ARMHDGTTPLILAARLA---VEGMLEDLINS 114

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLLK 161
            ADVN VD  G           KS LH         A  +LLK
Sbjct: 115 HADVNAVDDLG-----------KSALHWAAAVNNVDAAVVLLK 146

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 72.1 bits (178), Expect = 2e-14
 Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 21/104 (20%)

Query: 62  EERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLL 121
           +  TP+++AA      +L+ +I +   +VN A    G +ALH A A     + +   +LL
Sbjct: 91  DGTTPLILAARLAVEGMLEDLINSH-ADVN-AVDDLGKSALHWAAAVN---NVDAAVVLL 145

Query: 122 SASADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLL 160
              A+ +  +              ++PL            ++LL
Sbjct: 146 KNGANKDMQNNRE-----------ETPLFLAAREGSYETAKVLL 178

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 71.7 bits (177), Expect = 2e-14
 Identities = 18/102 (17%), Positives = 33/102 (32%), Gaps = 21/102 (20%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
           ++ +  AA   +V     +++ G  N +    +   T L  A       S+E  K+LL  
Sbjct: 126 KSALHWAAAVNNVDAAVVLLKNG-ANKD-MQNNREETPLFLAAR---EGSYETAKVLLDH 180

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLL 160
            A+ +  D              + P            + LL 
Sbjct: 181 FANRDITDHMD-----------RLPRDIAQERMHHDIVRLLD 211

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 67.0 bits (165), Expect = 9e-13
 Identities = 21/103 (20%), Positives = 39/103 (37%), Gaps = 22/103 (21%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
            T + +AA +      K ++E    + N    + G T LH AV+     +  V ++L+  
Sbjct: 26  ETALHLAARYSRSDAAKRLLEAS-ADAN-IQDNMGRTPLHAAVSAD---AQGVFQILIRN 80

Query: 124 SA-DVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLL 160
            A D++     G            +PL        +  +E L+
Sbjct: 81  RATDLDARMHDG-----------TTPLILAARLAVEGMLEDLI 112

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 63.6 bits (156), Expect = 1e-11
 Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 20/93 (21%)

Query: 74  GSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVY 133
            + AV+   I  G  +++      G TALH A      S  +  K LL ASAD N  D  
Sbjct: 2   DAPAVISDFIYQG-ASLHNQTDRTGETALHLAAR---YSRSDAAKRLLEASADANIQDNM 57

Query: 134 GNKPVDLIPVAMKSPLHS-----RKRAIELLLK 161
           G           ++PLH+      +   ++L++
Sbjct: 58  G-----------RTPLHAAVSADAQGVFQILIR 79

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 61.3 bits (150), Expect = 9e-11
 Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 5/67 (7%)

Query: 62  EERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLL 121
            E TP+ +AA  GS    K +++    N +             A         ++V+LL 
Sbjct: 157 REETPLFLAAREGSYETAKVLLDHF-ANRD-ITDHMDRLPRDIAQ---ERMHHDIVRLLD 211

Query: 122 SASADVN 128
             +   +
Sbjct: 212 EYNLVRS 218

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 75.2 bits (186), Expect = 2e-16
 Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 21/105 (20%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
            TP+  A   G + V++ +++     VN   G    + LH A   G     ++VKLLLS 
Sbjct: 44  WTPLHEACNHGHLKVVELLLQHK-ALVN-TTGYQNDSPLHDAAKNG---HVDIVKLLLSY 98

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLLKGD 163
            A  N V+++G             P+        K  + L  K +
Sbjct: 99  GASRNAVNIFG-----------LRPVDYTDDESMKSLLLLPEKNE 132

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 70.5 bits (174), Expect = 8e-15
 Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 21/103 (20%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
            T + IA++ G +  ++Y+++ G  + N      G+T LH A   G     +VV+LLL  
Sbjct: 11  ETLLHIASIKGDIPSVEYLLQNG-SDPN-VKDHAGWTPLHEACNHG---HLKVVELLLQH 65

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLLK 161
            A VN      +           SPLH          ++LLL 
Sbjct: 66  KALVNTTGYQND-----------SPLHDAAKNGHVDIVKLLLS 97

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 52.4 bits (127), Expect = 2e-08
 Identities = 20/79 (25%), Positives = 28/79 (35%), Gaps = 21/79 (26%)

Query: 88  VNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKS 147
           ++        G T LH A   G       V+ LL   +D N  D  G            +
Sbjct: 2   IDPFTN--HRGETLLHIASIKG---DIPSVEYLLQNGSDPNVKDHAG-----------WT 45

Query: 148 PLHS-----RKRAIELLLK 161
           PLH        + +ELLL+
Sbjct: 46  PLHEACNHGHLKVVELLLQ 64

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 73.5 bits (182), Expect = 3e-16
 Identities = 34/74 (45%), Positives = 42/74 (56%), Gaps = 5/74 (6%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
           RTP+ +AA  G + V+K ++E G  +VN A   +G T LH A   G     EVVKLLL A
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAG-ADVN-AKDKNGRTPLHLAARNG---HLEVVKLLLEA 57

Query: 124 SADVNCVDVYGNKP 137
            ADVN  D  G  P
Sbjct: 58  GADVNAKDKNGRTP 71

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 60.4 bits (148), Expect = 1e-11
 Identities = 28/62 (45%), Positives = 36/62 (58%), Gaps = 5/62 (8%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
           RTP+ +AA  G + V+K ++E G  +VN A   +G T LH A   G     EVVKLLL A
Sbjct: 36  RTPLHLAARNGHLEVVKLLLEAG-ADVN-AKDKNGRTPLHLAARNG---HLEVVKLLLEA 90

Query: 124 SA 125
            A
Sbjct: 91  GA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 52.0 bits (126), Expect = 9e-09
 Identities = 26/70 (37%), Positives = 31/70 (44%), Gaps = 19/70 (27%)

Query: 97  DGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHS----- 151
           +G T LH A   G     EVVKLLL A ADVN  D  G            +PLH      
Sbjct: 1   NGRTPLHLAARNG---HLEVVKLLLEAGADVNAKDKNGR-----------TPLHLAARNG 46

Query: 152 RKRAIELLLK 161
               ++LLL+
Sbjct: 47  HLEVVKLLLE 56

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 77.1 bits (191), Expect = 4e-16
 Identities = 22/101 (21%), Positives = 38/101 (37%), Gaps = 18/101 (17%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
           + P+  AA  GS+ +++ +   GK  VN      G+T L  A+A G     +   LL+  
Sbjct: 141 QIPLHRAASVGSLKLIELLCGLGKSAVN-WQDKQGWTPLFHALAEG---HGDAAVLLVEK 196

Query: 124 S-ADVNCVDVYGNKPVDLIPVAMKSPLH--SRKRAIELLLK 161
             A+ + VD  G                    ++  +  L 
Sbjct: 197 YGAEYDLVDNKG-----------AKAEDVALNEQVKKFFLN 226

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 74.0 bits (183), Expect = 5e-15
 Identities = 29/103 (28%), Positives = 42/103 (40%), Gaps = 21/103 (20%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETG-KVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLS 122
            TP  IA   G++ V+K + +   K ++N    + G T LH AV       FEV + L+ 
Sbjct: 73  WTPFHIACSVGNLEVVKSLYDRPLKPDLN-KITNQGVTCLHLAVGKK---WFEVSQFLIE 128

Query: 123 ASADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLL 160
             A V   D +            + PLH        + IELL 
Sbjct: 129 NGASVRIKDKFN-----------QIPLHRAASVGSLKLIELLC 160

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 69.8 bits (172), Expect = 1e-13
 Identities = 20/108 (18%), Positives = 33/108 (30%), Gaps = 22/108 (20%)

Query: 59  MGFEERTPIMIAAMFGSVA-VLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVV 117
           M      P+  A M      V + +       +      DG   LH +V+     + E+ 
Sbjct: 1   MS---NYPLHQACMENEFFKVQELLHSKP-SLLL-QKDQDGRIPLHWSVSFQ---AHEIT 52

Query: 118 KLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLL 160
             LLS   +VN  D   +           +P H          ++ L 
Sbjct: 53  SFLLSKMENVNLDDYPDDS--------GWTPFHIACSVGNLEVVKSLY 92

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 49.4 bits (119), Expect = 1e-06
 Identities = 16/69 (23%), Positives = 21/69 (30%), Gaps = 18/69 (26%)

Query: 98  GFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHS-----R 152
               LH A     N  F+V +LL S  + +   D  G           + PLH       
Sbjct: 2   SNYPLHQAC--MENEFFKVQELLHSKPSLLLQKDQDG-----------RIPLHWSVSFQA 48

Query: 153 KRAIELLLK 161
                 LL 
Sbjct: 49  HEITSFLLS 57

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 73.6 bits (182), Expect = 6e-16
 Identities = 23/87 (26%), Positives = 33/87 (37%), Gaps = 16/87 (18%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
           R P+  AA  G + +L++++  G  ++N A      T L  AV  G       VKLLLS 
Sbjct: 41  RKPLHYAADCGQLEILEFLLLKG-ADIN-APDKHHITPLLSAVYEG---HVSCVKLLLSK 95

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLH 150
            AD       G            +   
Sbjct: 96  GADKTVKGPDG-----------LTAFE 111

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 72.8 bits (180), Expect = 9e-16
 Identities = 25/103 (24%), Positives = 37/103 (35%), Gaps = 21/103 (20%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
               M A   G +  +K  +  G  +VN      G   LH A   G     E+++ LL  
Sbjct: 8   DKEFMWALKNGDLDEVKDYVAKG-EDVN-RTLEGGRKPLHYAADCG---QLEILEFLLLK 62

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLLK 161
            AD+N  D +             +PL S         ++LLL 
Sbjct: 63  GADINAPDKHH-----------ITPLLSAVYEGHVSCVKLLLS 94

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 53.2 bits (129), Expect = 9e-09
 Identities = 12/45 (26%), Positives = 16/45 (35%), Gaps = 3/45 (6%)

Query: 93  ACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKP 137
             GS        A+  G     + VK  ++   DVN     G KP
Sbjct: 2   PLGSMCDKEFMWALKNG---DLDEVKDYVAKGEDVNRTLEGGRKP 43

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 47.4 bits (114), Expect = 8e-07
 Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 5/55 (9%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVK 118
            TP++ A   G V+ +K ++  G  +     G DG TA              +++
Sbjct: 74  ITPLLSAVYEGHVSCVKLLLSKG-ADKT-VKGPDGLTAFEATDNQA---IKALLQ 123

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 74.7 bits (185), Expect = 7e-16
 Identities = 27/103 (26%), Positives = 35/103 (33%), Gaps = 20/103 (19%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
              ++ AA  G V  +K +     VN          T LH A          VV+ LL  
Sbjct: 9   DRQLLEAAKAGDVETVKKLCTVQSVNCR-DIEGRQSTPLHFAAGYN---RVSVVEYLLQH 64

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLLK 161
            ADV+  D  G             PLH+          ELL+K
Sbjct: 65  GADVHAKDKGG-----------LVPLHNACSYGHYEVAELLVK 96

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 72.8 bits (180), Expect = 3e-15
 Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 21/105 (20%)

Query: 62  EERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLL 121
            + TP+  AA +  V+V++Y+++ G  +V+ A    G   LH A + G    +EV +LL+
Sbjct: 41  RQSTPLHFAAGYNRVSVVEYLLQHG-ADVH-AKDKGGLVPLHNACSYG---HYEVAELLV 95

Query: 122 SASADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLLK 161
              A VN  D++             +PLH      +    +LLL+
Sbjct: 96  KHGAVVNVADLWK-----------FTPLHEAAAKGKYEICKLLLQ 129

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 71.3 bits (176), Expect = 1e-14
 Identities = 25/102 (24%), Positives = 36/102 (35%), Gaps = 20/102 (19%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
             P+  A  +G   V + +++ G   VN       FT LH A A      +E+ KLLL  
Sbjct: 76  LVPLHNACSYGHYEVAELLVKHG-AVVN-VADLWKFTPLHEAAA---KGKYEICKLLLQH 130

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLH----SRKRAIELLLK 161
            AD    +  G            +PL           +LL  
Sbjct: 131 GADPTKKNRDG-----------NTPLDLVKDGDTDIQDLLRG 161

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 54.7 bits (133), Expect = 6e-09
 Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 6/62 (9%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
            TP+  AA  G   + K +++ G  +       DG T L        +   ++  LL   
Sbjct: 109 FTPLHEAAAKGKYEICKLLLQHG-ADPT-KKNRDGNTPLDLV----KDGDTDIQDLLRGD 162

Query: 124 SA 125
           +A
Sbjct: 163 AA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 47.4 bits (114), Expect = 2e-06
 Identities = 17/79 (21%), Positives = 25/79 (31%), Gaps = 24/79 (30%)

Query: 89  NVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA-SADVNCVDVYGNKPVDLIPVAMKS 147
             N    S+    L  A   G     E VK L +  S +   ++               +
Sbjct: 3   MGN----SEADRQLLEAAKAG---DVETVKKLCTVQSVNCRDIEGRQ-----------ST 44

Query: 148 PLHS-----RKRAIELLLK 161
           PLH      R   +E LL+
Sbjct: 45  PLHFAAGYNRVSVVEYLLQ 63

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 72.8 bits (180), Expect = 9e-16
 Identities = 32/103 (31%), Positives = 42/103 (40%), Gaps = 21/103 (20%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
            TP+  AA  G    +K ++  G  +VN A   DG T LH A   G     E+VKLLL+ 
Sbjct: 10  NTPLHNAAKNGHAEEVKKLLSKG-ADVN-ARSKDGNTPLHLAAKNG---HAEIVKLLLAK 64

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLLK 161
            ADVN     G            +P H          ++LL  
Sbjct: 65  GADVNARSKDG-----------NTPEHLAKKNGHHEIVKLLDA 96

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 69.7 bits (172), Expect = 1e-14
 Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 16/87 (18%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
            TP+ +AA  G   ++K ++  G  +VN A   DG T  H A   G     E+VKLL + 
Sbjct: 43  NTPLHLAAKNGHAEIVKLLLAKG-ADVN-ARSKDGNTPEHLAKKNG---HHEIVKLLDAK 97

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLH 150
            ADVN                     H
Sbjct: 98  GADVNARSWGS-----------SHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 51.2 bits (124), Expect = 3e-08
 Identities = 24/70 (34%), Positives = 27/70 (38%), Gaps = 19/70 (27%)

Query: 97  DGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHS----- 151
           DG T LH A   G     E VK LLS  ADVN     G            +PLH      
Sbjct: 8   DGNTPLHNAAKNG---HAEEVKKLLSKGADVNARSKDG-----------NTPLHLAAKNG 53

Query: 152 RKRAIELLLK 161
               ++LLL 
Sbjct: 54  HAEIVKLLLA 63

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 77.2 bits (191), Expect = 9e-16
 Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 20/104 (19%)

Query: 62  EERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLL 121
           +  TP+ +A +     +++ + + G  ++N+   + G T LH AV      +  V++LLL
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRDAG-ADLNKPEPTCGRTPLHLAVEAQ---AASVLELLL 212

Query: 122 SASADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLL 160
            A AD       G           ++PL S           LL 
Sbjct: 213 KAGADPTARMYGG-----------RTPLGSALLRPNPILARLLR 245

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 74.9 bits (185), Expect = 5e-15
 Identities = 20/105 (19%), Positives = 34/105 (32%), Gaps = 22/105 (20%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETG--KVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLL 121
            T + +A +      L +++        ++      G TALH A   G       V+ L 
Sbjct: 10  DTALHLAVIHQHEPFLDFLLGFSAGHEYLD-LQNDLGQTALHLAAILG---EASTVEKLY 65

Query: 122 SASADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLLK 161
           +A A V   +  G            + LH            +LL+
Sbjct: 66  AAGAGVLVAERGG-----------HTALHLACRVRAHTCACVLLQ 99

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 74.1 bits (183), Expect = 1e-14
 Identities = 23/131 (17%), Positives = 43/131 (32%), Gaps = 33/131 (25%)

Query: 38  EKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSD 97
           + G D+++P    GR            TP+ +A    + +VL+ +++ G  +   A    
Sbjct: 179 DAGADLNKPEPTCGR------------TPLHLAVEAQAASVLELLLKAG-ADPT-ARMYG 224

Query: 98  GFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLH-----SR 152
           G T L  A+      +  + +LL +  A                     SP       S 
Sbjct: 225 GRTPLGSALL---RPNPILARLLRAHGAPEPEDGGDK-----------LSPCSSSGSDSD 270

Query: 153 KRAIELLLKGD 163
               +   + D
Sbjct: 271 SDNRDEGDEYD 281

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 59.5 bits (145), Expect = 6e-10
 Identities = 11/116 (9%), Positives = 22/116 (18%), Gaps = 31/116 (26%)

Query: 62  EERTPIMIAAMFGSVAVLKYVIETGKVNVNR------------ACGSDGFTALHCAVAGG 109
              T + +A    +      +++    +  R                             
Sbjct: 77  GGHTALHLACRVRAHTCACVLLQPR-PSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQ-- 133

Query: 110 ANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLL 160
            N   E           +   +  G            +PLH          + LL 
Sbjct: 134 PNPENEEEPRDEDWRLQLEAENYDG-----------HTPLHVAVIHKDAEMVRLLR 178

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 49.5 bits (119), Expect = 1e-06
 Identities = 17/73 (23%), Positives = 24/73 (32%), Gaps = 22/73 (30%)

Query: 97  DGFTALHCAVAGGANSSFEVVKLLLSASAD---VNCVDVYGNKPVDLIPVAMKSPLHS-- 151
           DG TALH AV          +  LL  SA    ++  +  G           ++ LH   
Sbjct: 8   DGDTALHLAVIHQ---HEPFLDFLLGFSAGHEYLDLQNDLG-----------QTALHLAA 53

Query: 152 ---RKRAIELLLK 161
                  +E L  
Sbjct: 54  ILGEASTVEKLYA 66

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 79.1 bits (196), Expect = 1e-15
 Identities = 26/102 (25%), Positives = 40/102 (39%), Gaps = 21/102 (20%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
            TP+ +A+  G + ++K +++ G  + N        T LH A   G     EV K LL  
Sbjct: 15  LTPLHVASFMGHLPIVKNLLQRG-ASPN-VSNVKVETPLHMAARAG---HTEVAKYLLQN 69

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLL 160
            A VN                 ++PLH          ++LLL
Sbjct: 70  KAKVNAKAKDD-----------QTPLHCAARIGHTNMVKLLL 100

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 79.1 bits (196), Expect = 1e-15
 Identities = 30/104 (28%), Positives = 42/104 (40%), Gaps = 21/104 (20%)

Query: 62  EERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLL 121
           +++TP+  AA  G   ++K ++E    N N    + G T LH A   G     E V  LL
Sbjct: 79  DDQTPLHCAARIGHTNMVKLLLENN-ANPN-LATTAGHTPLHIAAREG---HVETVLALL 133

Query: 122 SASADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLL 160
              A   C+   G            +PLH      + R  ELLL
Sbjct: 134 EKEASQACMTKKG-----------FTPLHVAAKYGKVRVAELLL 166

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 78.3 bits (194), Expect = 1e-15
 Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 21/105 (20%)

Query: 62  EERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLL 121
           +  TP+ +AA +G V V + ++E    + N A G +G T LH AV      + ++VKLLL
Sbjct: 145 KGFTPLHVAAKYGKVRVAELLLERD-AHPN-AAGKNGLTPLHVAVHHN---NLDIVKLLL 199

Query: 122 SASADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLLK 161
                 +     G            +PLH      +      LL+
Sbjct: 200 PRGGSPHSPAWNGY-----------TPLHIAAKQNQVEVARSLLQ 233

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 77.9 bits (193), Expect = 2e-15
 Identities = 28/103 (27%), Positives = 37/103 (35%), Gaps = 21/103 (20%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
            TP+ IAA  G V  +  ++E    +        GFT LH A   G      V +LLL  
Sbjct: 114 HTPLHIAAREGHVETVLALLEKE-ASQA-CMTKKGFTPLHVAAKYG---KVRVAELLLER 168

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLLK 161
            A  N     G            +PLH          ++LLL 
Sbjct: 169 DAHPNAAGKNG-----------LTPLHVAVHHNNLDIVKLLLP 200

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 77.9 bits (193), Expect = 2e-15
 Identities = 21/103 (20%), Positives = 35/103 (33%), Gaps = 21/103 (20%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
            TP+ +AA  G   ++  ++     N N      G T LH     G      V  +L+  
Sbjct: 246 VTPLHLAAQEGHAEMVALLLSKQ-ANGN-LGNKSGLTPLHLVAQEG---HVPVADVLIKH 300

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLLK 161
              V+     G            +PLH        + ++ LL+
Sbjct: 301 GVMVDATTRMGY-----------TPLHVASHYGNIKLVKFLLQ 332

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 77.9 bits (193), Expect = 2e-15
 Identities = 23/102 (22%), Positives = 39/102 (38%), Gaps = 21/102 (20%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
            TP+ +A    ++ ++K ++  G  + + +   +G+T LH A         EV + LL  
Sbjct: 180 LTPLHVAVHHNNLDIVKLLLPRG-GSPH-SPAWNGYTPLHIAAKQN---QVEVARSLLQY 234

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLL 160
               N   V G            +PLH          + LLL
Sbjct: 235 GGSANAESVQG-----------VTPLHLAAQEGHAEMVALLL 265

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 74.5 bits (184), Expect = 3e-14
 Identities = 33/134 (24%), Positives = 55/134 (41%), Gaps = 35/134 (26%)

Query: 38  EKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSD 97
           + G  VD  +          +MG    TP+ +A+ +G++ ++K++++    +VN A    
Sbjct: 299 KHGVMVDATT----------RMG---YTPLHVASHYGNIKLVKFLLQHQ-ADVN-AKTKL 343

Query: 98  GFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLH--SRKRA 155
           G++ LH A   G     ++V LLL   A  N V   G            +PL    R   
Sbjct: 344 GYSPLHQAAQQG---HTDIVTLLLKNGASPNEVSSDG-----------TTPLAIAKRLGY 389

Query: 156 IE----LLLKGDHT 165
           I     L +  D T
Sbjct: 390 ISVTDVLKVVTDET 403

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 61.4 bits (150), Expect = 4e-10
 Identities = 24/115 (20%), Positives = 43/115 (37%), Gaps = 25/115 (21%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLL--- 120
            +P+  AA  G   ++  +++ G  + N    SDG T L  A   G      V  +L   
Sbjct: 345 YSPLHQAAQQGHTDIVTLLLKNG-ASPN-EVSSDGTTPLAIAKRLG---YISVTDVLKVV 399

Query: 121 LSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNI 175
              ++ V   D +             S   +    ++ +L  D +  E EEL++ 
Sbjct: 400 TDETSFVLVSDKHR-----------MSFPET----VDEIL--DVSEDEGEELISF 437

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 59.4 bits (145), Expect = 2e-09
 Identities = 19/79 (24%), Positives = 26/79 (32%), Gaps = 20/79 (25%)

Query: 88  VNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKS 147
           ++     G  G T LH A   G      +VK LL   A  N  +V              +
Sbjct: 5   ISGG-GGGESGLTPLHVASFMG---HLPIVKNLLQRGASPNVSNVKVE-----------T 49

Query: 148 PLHS-----RKRAIELLLK 161
           PLH           + LL+
Sbjct: 50  PLHMAARAGHTEVAKYLLQ 68

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 74.0 bits (183), Expect = 1e-15
 Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 21/103 (20%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
            +P+ +AA +G  +  + ++  G V+ + A      T LH A + G      +V++LL  
Sbjct: 35  TSPLHLAAQYGHFSTTEVLLRAG-VSRD-ARTKVDRTPLHMAASEG---HANIVEVLLKH 89

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLLK 161
            ADVN  D+              + LH       +  +ELL+K
Sbjct: 90  GADVNAKDMLK-----------MTALHWATEHNHQEVVELLIK 121

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 69.7 bits (172), Expect = 3e-14
 Identities = 20/102 (19%), Positives = 34/102 (33%), Gaps = 22/102 (21%)

Query: 65  TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
             ++ AA  G    ++ ++  G           G + LH A   G    F   ++LL A 
Sbjct: 4   KKLLEAARAGQDDEVRILMANG-APFTT--DWLGTSPLHLAAQYG---HFSTTEVLLRAG 57

Query: 125 ADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLLK 161
              +                 ++PLH          +E+LLK
Sbjct: 58  VSRDARTKVD-----------RTPLHMAASEGHANIVEVLLK 88

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 68.6 bits (169), Expect = 6e-14
 Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 21/101 (20%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
           RTP+ +AA  G   +++ +++ G  +VN A      TALH A     ++  EVV+LL+  
Sbjct: 68  RTPLHMAASEGHANIVEVLLKHG-ADVN-AKDMLKMTALHWATE---HNHQEVVELLIKY 122

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELL 159
            ADV+    +            K+          +   E+L
Sbjct: 123 GADVHTQSKFC-----------KTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 48.2 bits (116), Expect = 9e-07
 Identities = 16/70 (22%), Positives = 23/70 (32%), Gaps = 20/70 (28%)

Query: 97  DGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHS----- 151
           D    L  A   G     + V++L++  A     D  G            SPLH      
Sbjct: 1   DLGKKLLEAARAG---QDDEVRILMANGAPFT-TDWLG-----------TSPLHLAAQYG 45

Query: 152 RKRAIELLLK 161
                E+LL+
Sbjct: 46  HFSTTEVLLR 55

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 76.0 bits (188), Expect = 1e-15
 Identities = 23/103 (22%), Positives = 40/103 (38%), Gaps = 20/103 (19%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
            T + +A        ++ ++E G  +++      G + L  AV    N+S  +V+LLL  
Sbjct: 117 LTALHVAVNTECQETVQLLLERG-ADIDAVDIKSGRSPLIHAVE---NNSLSMVQLLLQH 172

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLLK 161
            A+VN     G            S LHS         +  L++
Sbjct: 173 GANVNAQMYSG-----------SSALHSASGRGLLPLVRTLVR 204

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 75.6 bits (187), Expect = 1e-15
 Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 23/105 (21%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGK---VNVNRACGSDGFTALHCAVAGGANSSFEVVKLL 120
            TP+ IA + G++  +  ++   +     ++    +   T LH AV         VV+LL
Sbjct: 10  DTPLHIAVVQGNLPAVHRLVNLFQQGGRELD-IYNNLRQTPLHLAVITT---LPSVVRLL 65

Query: 121 LSASADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLL 160
           ++A A    +D +G           ++  H          +  LL
Sbjct: 66  VTAGASPMALDRHG-----------QTAAHLACEHRSPTCLRALL 99

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 72.1 bits (178), Expect = 2e-14
 Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 33/128 (25%)

Query: 38  EKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSD 97
           E+G D+D      GR            +P++ A    S+++++ +++ G  NVN A    
Sbjct: 137 ERGADIDAVDIKSGR------------SPLIHAVENNSLSMVQLLLQHG-ANVN-AQMYS 182

Query: 98  GFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHS-----R 152
           G +ALH A   G      +V+ L+ + AD +  + +             +PL        
Sbjct: 183 GSSALHSASGRG---LLPLVRTLVRSGADSSLKNCHN-----------DTPLMVARSRRV 228

Query: 153 KRAIELLL 160
              +    
Sbjct: 229 IDILRGKA 236

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 70.9 bits (175), Expect = 6e-14
 Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 24/107 (22%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETG---KVNVNRACGSDGFTALHCAVAGGANSSFEVVKLL 120
           +T   +A    S   L+ ++++     +++  A   DG TALH AV        E V+LL
Sbjct: 80  QTAAHLACEHRSPTCLRALLDSAAPGTLDLE-ARNYDGLTALHVAVNTE---CQETVQLL 135

Query: 121 LSASADVNCVDV-YGNKPVDLIPVAMKSPLHS-----RKRAIELLLK 161
           L   AD++ VD+  G           +SPL           ++LLL+
Sbjct: 136 LERGADIDAVDIKSG-----------RSPLIHAVENNSLSMVQLLLQ 171

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 55.9 bits (136), Expect = 6e-09
 Identities = 7/62 (11%), Positives = 25/62 (40%), Gaps = 5/62 (8%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
            + +  A+  G + +++ ++ +G  + +        T L  A +       ++++   + 
Sbjct: 184 SSALHSASGRGLLPLVRTLVRSG-ADSS-LKNCHNDTPLMVARSRR---VIDILRGKATR 238

Query: 124 SA 125
            A
Sbjct: 239 PA 240

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 47.8 bits (115), Expect = 3e-06
 Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 23/74 (31%)

Query: 97  DGFTALHCAVAGGANSSFEVVKLLLSAS----ADVNCVDVYGNKPVDLIPVAMKSPLHS- 151
           DG T LH AV  G   +   V  L++       +++  +              ++PLH  
Sbjct: 8   DGDTPLHIAVVQG---NLPAVHRLVNLFQQGGRELDIYNNLR-----------QTPLHLA 53

Query: 152 ----RKRAIELLLK 161
                   + LL+ 
Sbjct: 54  VITTLPSVVRLLVT 67

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 73.6 bits (182), Expect = 1e-15
 Identities = 22/104 (21%), Positives = 39/104 (37%), Gaps = 22/104 (21%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
           +T + +   FGS A+   +++ G  + N    + G + +H A   G     + +K+L+  
Sbjct: 37  KTALQVMM-FGSTAIALELLKQG-ASPN-VQDTSGTSPVHDAARTG---FLDTLKVLVEH 90

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLLKG 162
            ADVN  D  G             P+H          +  L   
Sbjct: 91  GADVNVPDGTG-----------ALPIHLAVQEGHTAVVSFLAAE 123

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 71.3 bits (176), Expect = 8e-15
 Identities = 21/102 (20%), Positives = 35/102 (34%), Gaps = 21/102 (20%)

Query: 65  TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
             +  AA  G V  ++ ++    V+ + A    G TAL          S  +   LL   
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPD-ALNRFGKTALQVM----MFGSTAIALELLKQG 58

Query: 125 ADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLLK 161
           A  N  D  G            SP+H          +++L++
Sbjct: 59  ASPNVQDTSG-----------TSPVHDAARTGFLDTLKVLVE 89

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 55.9 bits (136), Expect = 2e-09
 Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 6/59 (10%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLS 122
             PI +A   G  AV+ ++    + +++    + G T L  A+  G   + ++V +L  
Sbjct: 102 ALPIHLAVQEGHTAVVSFLAA--ESDLH-RRDARGLTPLELALQRG---AQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 44.3 bits (106), Expect = 2e-05
 Identities = 14/68 (20%), Positives = 21/68 (30%), Gaps = 17/68 (25%)

Query: 98  GFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHS----RK 153
               L  A A G +   EV +LL       + ++ +G           K+ L        
Sbjct: 2   AGDRLSGAAARG-DVQ-EVRRLLHRELVHPDALNRFG-----------KTALQVMMFGST 48

Query: 154 RAIELLLK 161
                LLK
Sbjct: 49  AIALELLK 56

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 73.7 bits (182), Expect = 1e-15
 Identities = 24/103 (23%), Positives = 37/103 (35%), Gaps = 21/103 (20%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
              +  AA  G V  ++ ++E G  N N A  S G   +   + G    S  V +LLL  
Sbjct: 13  ADWLATAAARGRVEEVRALLEAG-ANPN-APNSYGRRPIQVMMMG----SARVAELLLLH 66

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLLK 161
            A+ NC D                P+H          + +L +
Sbjct: 67  GAEPNCADPATL----------TRPVHDAAREGFLDTLVVLHR 99

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 67.5 bits (166), Expect = 2e-13
 Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 7/78 (8%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFT-ALHCAVAGGANSSFEVVKLLLS 122
           R PI +  M GS  V + ++  G    N        T  +H A   G     + + +L  
Sbjct: 46  RRPIQVMMM-GSARVAELLLLHG-AEPN-CADPATLTRPVHDAAREG---FLDTLVVLHR 99

Query: 123 ASADVNCVDVYGNKPVDL 140
           A A ++  D +G  PVDL
Sbjct: 100 AGARLDVRDAWGRLPVDL 117

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 65.2 bits (160), Expect = 1e-12
 Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 5/67 (7%)

Query: 65  TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
            P+  AA  G +  L  +   G   ++    + G   +  A   G     +V + L +A+
Sbjct: 80  RPVHDAAREGFLDTLVVLHRAG-ARLD-VRDAWGRLPVDLAEELG---HRDVARYLRAAA 134

Query: 125 ADVNCVD 131
                 +
Sbjct: 135 GGTRGSN 141

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 52.1 bits (126), Expect = 4e-08
 Identities = 19/69 (27%), Positives = 24/69 (34%), Gaps = 18/69 (26%)

Query: 97  DGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHS----R 152
                L  A A G     E V+ LL A A+ N  + YG           + P+       
Sbjct: 11  PSADWLATAAARG---RVEEVRALLEAGANPNAPNSYG-----------RRPIQVMMMGS 56

Query: 153 KRAIELLLK 161
            R  ELLL 
Sbjct: 57  ARVAELLLL 65

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 72.9 bits (180), Expect = 2e-15
 Identities = 22/103 (21%), Positives = 38/103 (36%), Gaps = 21/103 (20%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
              +  AA  G V  ++ ++E G  + N A    G   +   + G    S +V +LLL  
Sbjct: 13  DAGLATAAARGQVETVRQLLEAG-ADPN-ALNRFGRRPIQVMMMG----SAQVAELLLLH 66

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLLK 161
            A+ NC D             +  P+H          + +L +
Sbjct: 67  GAEPNCADPAT----------LTRPVHDAAREGFLDTLVVLHR 99

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 65.9 bits (162), Expect = 4e-13
 Identities = 20/104 (19%), Positives = 33/104 (31%), Gaps = 23/104 (22%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFT-ALHCAVAGGANSSFEVVKLLLS 122
           R PI +  M GS  V + ++  G    N        T  +H A   G     + + +L  
Sbjct: 46  RRPIQVMMM-GSAQVAELLLLHG-AEPN-CADPATLTRPVHDAAREG---FLDTLVVLHR 99

Query: 123 ASADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLLK 161
           A A ++  D +G             P+        +     L  
Sbjct: 100 AGARLDVCDAWGR-----------LPVDLAEEQGHRDIARYLHA 132

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 60.9 bits (149), Expect = 2e-11
 Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 5/62 (8%)

Query: 65  TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
            P+  AA  G +  L  +   G   ++  C + G   +  A   G     ++ + L +A+
Sbjct: 80  RPVHDAAREGFLDTLVVLHRAG-ARLD-VCDAWGRLPVDLAEEQG---HRDIARYLHAAT 134

Query: 125 AD 126
            D
Sbjct: 135 GD 136

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 55.5 bits (135), Expect = 1e-09
 Identities = 20/80 (25%), Positives = 29/80 (36%), Gaps = 19/80 (23%)

Query: 86  GKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAM 145
           G   ++   G      L  A A G     E V+ LL A AD N ++ +G           
Sbjct: 1   GSPGIH-MLGGSSDAGLATAAARG---QVETVRQLLEAGADPNALNRFG----------- 45

Query: 146 KSPLHS----RKRAIELLLK 161
           + P+        +  ELLL 
Sbjct: 46  RRPIQVMMMGSAQVAELLLL 65

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 75.3 bits (186), Expect = 2e-15
 Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 20/103 (19%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
            T + +A++ G + +++ ++  G  +VN     +G TALH AV      + ++V LLL  
Sbjct: 118 HTCLHLASIHGYLGIVELLVSLG-ADVNAQEPCNGRTALHLAVDLQ---NPDLVSLLLKC 173

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLLK 161
            ADVN V   G            SP          R  + L +
Sbjct: 174 GADVNRVTYQG-----------YSPYQLTWGRPSTRIQQQLGQ 205

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 68.3 bits (168), Expect = 4e-13
 Identities = 22/106 (20%), Positives = 36/106 (33%), Gaps = 23/106 (21%)

Query: 64  RTPIMIAAMFGSVAVLKYVIET---GKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLL 120
            + + +A +    A+   VI         +N    +   T LH AV        E+ + L
Sbjct: 9   DSFLHLAIIHEEKALTMEVIRQVKGDLAFLN-FQNNLQQTPLHLAVITN---QPEIAEAL 64

Query: 121 LSASADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLLK 161
           L A  D    D  GN           +PLH         ++ +L +
Sbjct: 65  LGAGCDPELRDFRGN-----------TPLHLACEQGCLASVGVLTQ 99

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 66.8 bits (164), Expect = 1e-12
 Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 26/109 (23%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETG-----KVNVNRACGSDGFTALHCAVAGGANSSFEVVK 118
            TP+ +A   G +A +  + ++         +  A   +G T LH A   G      +V+
Sbjct: 79  NTPLHLACEQGCLASVGVLTQSCTTPHLHSILK-ATNYNGHTCLHLASIHG---YLGIVE 134

Query: 119 LLLSASADVNCVD-VYGNKPVDLIPVAMKSPLHS-----RKRAIELLLK 161
           LL+S  ADVN  +   G           ++ LH          + LLLK
Sbjct: 135 LLVSLGADVNAQEPCNG-----------RTALHLAVDLQNPDLVSLLLK 172

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 61.8 bits (151), Expect = 8e-11
 Identities = 9/71 (12%), Positives = 25/71 (35%), Gaps = 5/71 (7%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
           RT + +A    +  ++  +++ G  +VN      G++            S  + + L   
Sbjct: 152 RTALHLAVDLQNPDLVSLLLKCG-ADVN-RVTYQGYSPYQLTWG---RPSTRIQQQLGQL 206

Query: 124 SADVNCVDVYG 134
           + +   +    
Sbjct: 207 TLENLQMLPES 217

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 50.2 bits (121), Expect = 5e-07
 Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 17/71 (23%)

Query: 97  DGFTALHCAVAGGA-NSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHS---- 151
           DG + LH A+       + EV++ +    A +N  +              ++PLH     
Sbjct: 7   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQ-----------QTPLHLAVIT 55

Query: 152 -RKRAIELLLK 161
            +    E LL 
Sbjct: 56  NQPEIAEALLG 66

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 71.8 bits (177), Expect = 2e-15
 Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 5/77 (6%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
              ++ AA  G    ++ ++  G  +V  A   +G T LH A   G     EVVKLLL A
Sbjct: 25  GKKLLEAARAGQDDEVRILMANG-ADVA-AKDKNGSTPLHLAARNG---HLEVVKLLLEA 79

Query: 124 SADVNCVDVYGNKPVDL 140
            ADV   D +G    D+
Sbjct: 80  GADVXAQDKFGKTAFDI 96

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 62.6 bits (153), Expect = 3e-12
 Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 24/97 (24%)

Query: 70  AAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNC 129
            +          ++  G  ++     SD    L  A   G     + V++L++  ADV  
Sbjct: 1   GSSHHHHHHSSGLVPRG-SHMG----SDLGKKLLEAARAG---QDDEVRILMANGADVAA 52

Query: 130 VDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLLK 161
            D  G            +PLH          ++LLL+
Sbjct: 53  KDKNG-----------STPLHLAARNGHLEVVKLLLE 78

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 75.5 bits (187), Expect = 2e-15
 Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 20/104 (19%)

Query: 62  EERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLL 121
           E  T +  AA+   + ++KY I  G   V++  G    T LH A   G      +V  L+
Sbjct: 41  ENVTLLHWAAINNRIDLVKYYISKG-AIVDQLGGDLNSTPLHWATRQG---HLSMVVQLM 96

Query: 122 SASADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLL 160
              AD + +D  G            S +H          +  L+
Sbjct: 97  KYGADPSLIDGEG-----------CSCIHLAAQFGHTSIVAYLI 129

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 74.4 bits (184), Expect = 4e-15
 Identities = 29/104 (27%), Positives = 42/104 (40%), Gaps = 21/104 (20%)

Query: 64  RTPIMIAAMFG-SVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLS 122
            TP+M AA    SV   + ++    V+VN        TALH AV  G   +  V+ LLL 
Sbjct: 143 MTPLMWAAYRTHSVDPTRLLLTFN-VSVNLGDKYHKNTALHWAVLAG---NTTVISLLLE 198

Query: 123 ASADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLLK 161
           A A+V+  ++ G           +S L           I  L +
Sbjct: 199 AGANVDAQNIKG-----------ESALDLAKQRKNVWMINHLQE 231

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 74.0 bits (183), Expect = 5e-15
 Identities = 24/130 (18%), Positives = 44/130 (33%), Gaps = 34/130 (26%)

Query: 38  EKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSD 97
            KG  VD+                   TP+  A   G ++++  +++ G  + +     +
Sbjct: 63  SKGAIVDQLGGDLNS------------TPLHWATRQGHLSMVVQLMKYG-ADPS-LIDGE 108

Query: 98  GFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHS------ 151
           G + +H A   G      +V  L++   DV+ +D  G            +PL        
Sbjct: 109 GCSCIHLAAQFG---HTSIVAYLIAKGQDVDMMDQNG-----------MTPLMWAAYRTH 154

Query: 152 RKRAIELLLK 161
                 LLL 
Sbjct: 155 SVDPTRLLLT 164

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 71.7 bits (177), Expect = 3e-14
 Identities = 21/103 (20%), Positives = 36/103 (34%), Gaps = 20/103 (19%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
              I+ A  +G     + ++E G  +V      +  T LH A         ++VK  +S 
Sbjct: 10  TWDIVKATQYGIYERCRELVEAG-YDVR-QPDKENVTLLHWAAINN---RIDLVKYYISK 64

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLLK 161
            A V+ +    N           +PLH          +  L+K
Sbjct: 65  GAIVDQLGGDLN----------STPLHWATRQGHLSMVVQLMK 97

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 63.6 bits (156), Expect = 2e-11
 Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
            T +  A + G+  V+  ++E G  NV+ A    G +AL  A       +  ++  L  A
Sbjct: 178 NTALHWAVLAGNTTVISLLLEAG-ANVD-AQNIKGESALDLAKQRK---NVWMINHLQEA 232

Query: 124 SADVN 128
                
Sbjct: 233 RQAKG 237

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 55.5 bits (135), Expect = 8e-09
 Identities = 11/77 (14%), Positives = 21/77 (27%), Gaps = 20/77 (25%)

Query: 89  NVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSP 148
           ++           +  A   G    +E  + L+ A  DV   D               + 
Sbjct: 1   HMT-HIDDYSTWDIVKATQYG---IYERCRELVEAGYDVRQPDKEN-----------VTL 45

Query: 149 LHS-----RKRAIELLL 160
           LH      R   ++  +
Sbjct: 46  LHWAAINNRIDLVKYYI 62

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 75.4 bits (186), Expect = 2e-15
 Identities = 23/110 (20%), Positives = 47/110 (42%), Gaps = 21/110 (19%)

Query: 57  KKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEV 116
           ++        ++ AA+ G + V++  ++    + +     +G TALH A+ G    ++ +
Sbjct: 15  RRARLNPLVLLLDAALTGELEVVQQAVKEM-NDPS-QPNEEGITALHNAICGA---NYSI 69

Query: 117 VKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLLK 161
           V  L++A A+VN  D +G            +PLH             L++
Sbjct: 70  VDFLITAGANVNSPDSHG-----------WTPLHCAASCNDTVICMALVQ 108

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 69.2 bits (170), Expect = 2e-13
 Identities = 15/100 (15%), Positives = 27/100 (27%), Gaps = 15/100 (15%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
            TP+  AA      +   +++ G   +     SDG TA             +    L   
Sbjct: 88  WTPLHCAASCNDTVICMALVQHG-AAIFATTLSDGATAFEKC-DPYREGYADCATYLADV 145

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLH--SRKRAIELLLK 161
              +  ++                 L   S +   EL  +
Sbjct: 146 EQSMGLMNSGA-----------VYALWDYSAEFGDELSFR 174

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 68.1 bits (167), Expect = 5e-13
 Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 6/78 (7%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
            T +  A    + +++ ++I  G  NVN +  S G+T LHCA +        +   L+  
Sbjct: 55  ITALHNAICGANYSIVDFLITAG-ANVN-SPDSHGWTPLHCAASCN---DTVICMALVQH 109

Query: 124 SADVNCVDV-YGNKPVDL 140
            A +    +  G    + 
Sbjct: 110 GAAIFATTLSDGATAFEK 127

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 55.3 bits (134), Expect = 8e-09
 Identities = 12/72 (16%), Positives = 20/72 (27%), Gaps = 15/72 (20%)

Query: 80  KYVIETG-KVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPV 138
           + V+         R    +    L  A   G     EVV+  +    D +  +  G    
Sbjct: 2   RSVLRKAGSPRKARRARLNPLVLLLDAALTG---ELEVVQQAVKEMNDPSQPNEEG---- 54

Query: 139 DLIPVAMKSPLH 150
                   + LH
Sbjct: 55  -------ITALH 59

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 76.0 bits (188), Expect = 2e-15
 Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 20/102 (19%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
             P+  AA      ++K ++ +G ++ +      G TAL+ AV  G   + + VKL +  
Sbjct: 63  EFPLHQAATLEDTKIVKILLFSG-LDDS-QFDDKGNTALYYAVDSG---NMQTVKLFVKK 117

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLL 160
           +  +      G           K+  +          +   L
Sbjct: 118 NWRLMFYGKTG----------WKTSFYHAVMLNDVSIVSYFL 149

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 74.5 bits (184), Expect = 7e-15
 Identities = 17/103 (16%), Positives = 35/103 (33%), Gaps = 23/103 (22%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
            +    A    +V ++  ++  G    N     +    LH A         ++VK+LL +
Sbjct: 32  HSASYYAIADNNVRLVCTLLNAG-ALKNLL---ENEFPLHQAATLE---DTKIVKILLFS 84

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLLK 161
             D +  D  G            + L+        + ++L +K
Sbjct: 85  GLDDSQFDDKG-----------NTALYYAVDSGNMQTVKLFVK 116

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 74.1 bits (183), Expect = 1e-14
 Identities = 15/103 (14%), Positives = 31/103 (30%), Gaps = 21/103 (20%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
           +T    A M   V+++ Y +       + A      + +H  +  G     +++ LLL  
Sbjct: 130 KTSFYHAVMLNDVSIVSYFLSEIPSTFDLA---ILLSCIHITIKNG---HVDMMILLLDY 183

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLLK 161
               N  +     P           +           ++ L K
Sbjct: 184 MTSTNTNNSLLFIP----------DIKLAIDNKDIEMLQALFK 216

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 58.3 bits (142), Expect = 2e-09
 Identities = 11/101 (10%), Positives = 29/101 (28%), Gaps = 24/101 (23%)

Query: 64  RTP-IMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLS 122
             P I +A     + +L+ + +   +N+         +A    V        E+ K+++ 
Sbjct: 195 FIPDIKLAIDNKDIEMLQALFKYD-INIY--------SANLENVLLD---DAEIAKMIIE 242

Query: 123 ASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGD 163
              +                      +    +  E++ K  
Sbjct: 243 KHVEYKSDSYTK-----------DLDIVKNNKLDEIISKNK 272

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 55.2 bits (134), Expect = 2e-08
 Identities = 18/97 (18%), Positives = 33/97 (34%), Gaps = 24/97 (24%)

Query: 70  AAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNC 129
                    LK  +     +        G +A + A+A     +  +V  LL+A A  N 
Sbjct: 6   RINTWKSKQLKSFLS--SKDTF-KADVHGHSASYYAIADN---NVRLVCTLLNAGALKNL 59

Query: 130 VDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLLK 161
           ++   N          + PLH        + +++LL 
Sbjct: 60  LE---N----------EFPLHQAATLEDTKIVKILLF 83

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 74.6 bits (184), Expect = 3e-15
 Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 4/77 (5%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
            T +  A   G   +++ +     + +N      G TALH A   G     ++V+LLL+ 
Sbjct: 107 STALYWACHGGHKDIVEMLFTQPNIELN-QQNKLGDTALHAAAWKG---YADIVQLLLAK 162

Query: 124 SADVNCVDVYGNKPVDL 140
            A  +  ++      D+
Sbjct: 163 GARTDLRNIEKKLAFDM 179

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 70.0 bits (172), Expect = 1e-13
 Identities = 11/87 (12%), Positives = 25/87 (28%), Gaps = 7/87 (8%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
            T +  AA  G   +++ ++  G    +     +   A   A          ++K     
Sbjct: 141 DTALHAAAWKGYADIVQLLLAKG-ARTD-LRNIEKKLAFDMATNAA---CASLLKKKQGT 195

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLH 150
            A     +      +D     ++   H
Sbjct: 196 DAVRTLSNAEDY--LDDEDSDLEHHHH 220

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 59.6 bits (145), Expect = 3e-10
 Identities = 15/103 (14%), Positives = 26/103 (25%), Gaps = 26/103 (25%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
            T        G   ++       +              LH A   G   +   ++  L  
Sbjct: 46  DTNWWKGTSKGRTGLIPSNYVAEQAE-------SIDNPLHEAAKRG---NLSWLRECLDN 95

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLLK 161
              VN +D  G            + L+       K  +E+L  
Sbjct: 96  RVGVNGLDKAG-----------STALYWACHGGHKDIVEMLFT 127

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 71.6 bits (177), Expect = 4e-15
 Identities = 31/102 (30%), Positives = 44/102 (43%), Gaps = 21/102 (20%)

Query: 65  TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
             ++ AA  G    ++ ++  G  +VN A    G T L+ A A G     E+V++LL   
Sbjct: 16  KKLLEAARAGQDDEVRILMANG-ADVN-AKDEYGLTPLYLATAHG---HLEIVEVLLKNG 70

Query: 125 ADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLLK 161
           ADVN VD  G            +PLH           E+LLK
Sbjct: 71  ADVNAVDAIG-----------FTPLHLAAFIGHLEIAEVLLK 101

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 71.6 bits (177), Expect = 4e-15
 Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 21/103 (20%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
            TP+ +A   G + +++ +++ G  +VN A  + GFT LH A   G     E+ ++LL  
Sbjct: 48  LTPLYLATAHGHLEIVEVLLKNG-ADVN-AVDAIGFTPLHLAAFIG---HLEIAEVLLKH 102

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLLK 161
            ADVN  D +G           K+          +   E+L K
Sbjct: 103 GADVNAQDKFG-----------KTAFDISIGNGNEDLAEILQK 134

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 53.5 bits (130), Expect = 8e-09
 Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 19/78 (24%)

Query: 89  NVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSP 148
           + +   GSD    L  A   G     + V++L++  ADVN  D YG            +P
Sbjct: 5   HHHHHHGSDLGKKLLEAARAG---QDDEVRILMANGADVNAKDEYG-----------LTP 50

Query: 149 LHS-----RKRAIELLLK 161
           L+          +E+LLK
Sbjct: 51  LYLATAHGHLEIVEVLLK 68

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 72.4 bits (179), Expect = 4e-15
 Identities = 22/103 (21%), Positives = 37/103 (35%), Gaps = 22/103 (21%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
              +  AA  G +  L  +++   VNVN A    G TAL          + E+ + LL  
Sbjct: 6   GNELASAAARGDLEQLTSLLQNN-VNVN-AQNGFGRTALQVM----KLGNPEIARRLLLR 59

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLLK 161
            A+ +  D  G            + +H          ++ LL+
Sbjct: 60  GANPDLKDRTG-----------FAVIHDAARAGFLDTLQTLLE 91

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 68.6 bits (169), Expect = 8e-14
 Identities = 25/103 (24%), Positives = 39/103 (37%), Gaps = 22/103 (21%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
           RT + +    G+  + + ++  G  N +      GF  +H A   G     + ++ LL  
Sbjct: 39  RTALQVMK-LGNPEIARRLLLRG-ANPD-LKDRTGFAVIHDAARAG---FLDTLQTLLEF 92

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLLK 161
            ADVN  D  G             PLH        R +E L+K
Sbjct: 93  QADVNIEDNEG-----------NLPLHLAAKEGHLRVVEFLVK 124

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 60.5 bits (148), Expect = 5e-11
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
             P+ +AA  G + V++++++    NV       G TA   A   G     EVV L+ + 
Sbjct: 104 NLPLHLAAKEGHLRVVEFLVKHTASNVG-HRNHKGDTACDLARLYG---RNEVVSLMQAN 159

Query: 124 SA 125
            A
Sbjct: 160 GA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 50.5 bits (122), Expect = 2e-07
 Identities = 13/69 (18%), Positives = 20/69 (28%), Gaps = 18/69 (26%)

Query: 97  DGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHS----R 152
                L  A A G     E +  LL  + +VN  + +G           ++ L       
Sbjct: 4   PWGNELASAAARG---DLEQLTSLLQNNVNVNAQNGFG-----------RTALQVMKLGN 49

Query: 153 KRAIELLLK 161
                 LL 
Sbjct: 50  PEIARRLLL 58

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 72.4 bits (179), Expect = 4e-15
 Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 21/103 (20%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
            TP+ +AA  G + +++ +++ G  +VN A    G T L  A   G     E+V++LL  
Sbjct: 48  WTPLHLAAFNGHLEIVEVLLKNG-ADVN-AVDHAGMTPLRLAALFG---HLEIVEVLLKN 102

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLLK 161
            ADVN  D+ G            +PLH          +E+LLK
Sbjct: 103 GADVNANDMEG-----------HTPLHLAAMFGHLEIVEVLLK 134

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 72.4 bits (179), Expect = 5e-15
 Identities = 30/102 (29%), Positives = 45/102 (44%), Gaps = 21/102 (20%)

Query: 65  TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
             ++ AA  G    ++ ++  G  +VN A  + G+T LH A   G     E+V++LL   
Sbjct: 16  KKLLEAARAGRDDEVRILMANG-ADVN-AEDASGWTPLHLAAFNG---HLEIVEVLLKNG 70

Query: 125 ADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLLK 161
           ADVN VD  G            +PL           +E+LLK
Sbjct: 71  ADVNAVDHAG-----------MTPLRLAALFGHLEIVEVLLK 101

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 71.6 bits (177), Expect = 9e-15
 Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 21/103 (20%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
            TP+ +AA+FG + +++ +++ G  +VN A   +G T LH A   G     E+V++LL  
Sbjct: 81  MTPLRLAALFGHLEIVEVLLKNG-ADVN-ANDMEGHTPLHLAAMFG---HLEIVEVLLKN 135

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLLK 161
            ADVN  D +G           K+          +   E+L K
Sbjct: 136 GADVNAQDKFG-----------KTAFDISIDNGNEDLAEILQK 167

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 55.1 bits (134), Expect = 5e-09
 Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 19/78 (24%)

Query: 89  NVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSP 148
           + +   GSD    L  A   G     + V++L++  ADVN  D  G            +P
Sbjct: 5   HHHHHHGSDLGKKLLEAARAG---RDDEVRILMANGADVNAEDASG-----------WTP 50

Query: 149 LHS-----RKRAIELLLK 161
           LH          +E+LLK
Sbjct: 51  LHLAAFNGHLEIVEVLLK 68

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 72.8 bits (180), Expect = 6e-15
 Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 21/102 (20%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
           +TP+M + +FG   +  +++E G  NVN     +G T L  A   G     E+VK LL  
Sbjct: 102 KTPLMWSIIFGYSEMSYFLLEHG-ANVN-DRNLEGETPLIVASKYG---RSEIVKKLLEL 156

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLL 160
            AD++  D+ G            +   S     R+  I++  
Sbjct: 157 GADISARDLTG-----------LTAEASARIFGRQEVIKIFT 187

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 72.8 bits (180), Expect = 6e-15
 Identities = 26/102 (25%), Positives = 38/102 (37%), Gaps = 21/102 (20%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
           RTP+M+A M G    +  ++E     +      +G TAL  AV         + + LLS 
Sbjct: 36  RTPLMVACMLGMENAIDKLVENF-DKLE-DKDIEGSTALIWAVKNN---RLGIAEKLLSK 90

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLL 160
            ++VN  D  G           K+PL              LL
Sbjct: 91  GSNVNTKDFSG-----------KTPLMWSIIFGYSEMSYFLL 121

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 57.4 bits (140), Expect = 1e-09
 Identities = 15/103 (14%), Positives = 22/103 (21%), Gaps = 27/103 (26%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
                I         L ++             S   T L  A   G       +  L+  
Sbjct: 9   EIVEKIKDEKSINQNLDFLRN--------YRDSYNRTPLMVACMLG---MENAIDKLVEN 57

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLLK 161
              +   D+ G            + L       R    E LL 
Sbjct: 58  FDKLEDKDIEG-----------STALIWAVKNNRLGIAEKLLS 89

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 57.4 bits (140), Expect = 1e-09
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 5/60 (8%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
            TP+++A+ +G   ++K ++E G  +++ A    G TA   A   G     EV+K+    
Sbjct: 135 ETPLIVASKYGRSEIVKKLLELG-ADIS-ARDLTGLTAEASARIFG---RQEVIKIFTEV 189

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 75.4 bits (186), Expect = 9e-15
 Identities = 20/103 (19%), Positives = 35/103 (33%), Gaps = 20/103 (19%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
           RT +  AA   ++ ++KY++     N +     DG T +  A   G     EVV  L+  
Sbjct: 280 RTALHYAAQVSNMPIVKYLVGEKGSNKD-KQDEDGKTPIMLAAQEG---RIEVVMYLIQQ 335

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLLK 161
            A V  VD               +             +++  +
Sbjct: 336 GASVEAVDATD-----------HTARQLAQANNHHNIVDIFDR 367

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 73.1 bits (180), Expect = 5e-14
 Identities = 24/110 (21%), Positives = 32/110 (29%), Gaps = 29/110 (26%)

Query: 64  RTPIMIAAMFGSVAV--------LKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFE 115
           RT +   A   S            K  I  G  +VN A   D  T L  AV         
Sbjct: 126 RTVLHWIASNSSAEKSEDLIVHEAKECIAAG-ADVN-AMDCDENTPLMLAVLAR---RRR 180

Query: 116 VVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLL 160
           +V  L+ A AD    +              +S LH          +  +L
Sbjct: 181 LVAYLMKAGADPTIYNKSE-----------RSALHQAAANRDFGMMVYML 219

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 69.6 bits (171), Expect = 7e-13
 Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 19/91 (20%)

Query: 63  ERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLS 122
           E TP+M+A +     ++ Y+++ G  +          +ALH A A      F ++  +L+
Sbjct: 166 ENTPLMLAVLARRRRLVAYLMKAG-ADPT-IYNKSERSALHQAAANR---DFGMMVYMLN 220

Query: 123 AS---ADVNCVDVYGNKPVDLIPVAMKSPLH 150
           ++    D+  +D  G            + L 
Sbjct: 221 STKLKGDIEELDRNG-----------MTALM 240

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 65.7 bits (161), Expect = 1e-11
 Identities = 18/106 (16%), Positives = 36/106 (33%), Gaps = 11/106 (10%)

Query: 62  EERTPIMIAAMFGSVAVLKYVIETGKV--NVNRACGSDGFTALHCAVAGGANSSFEVVKL 119
            ER+ +  AA      ++ Y++ + K+  ++      +G TAL               KL
Sbjct: 198 SERSALHQAAANRDFGMMVYMLNSTKLKGDIE-ELDRNGMTALMIVAHNEGRDQVASAKL 256

Query: 120 LLSASADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLL 160
           L+   A V+                 ++ LH          ++ L+
Sbjct: 257 LVEKGAKVDYDGAARKDSEKYKG---RTALHYAAQVSNMPIVKYLV 299

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 61.9 bits (151), Expect = 2e-10
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 5/66 (7%)

Query: 62  EERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLL 121
           + +TPIM+AA  G + V+ Y+I+ G  +V  A  +   TA   A A        +V +  
Sbjct: 312 DGKTPIMLAAQEGRIEVVMYLIQQG-ASVE-AVDATDHTARQLAQANN---HHNIVDIFD 366

Query: 122 SASADV 127
               + 
Sbjct: 367 RCRPER 372

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 60.7 bits (148), Expect = 6e-10
 Identities = 12/104 (11%), Positives = 27/104 (25%), Gaps = 23/104 (22%)

Query: 62  EERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLL 121
               P       G+  +  +     +         +    LH   AG    S+ + + + 
Sbjct: 60  YSLYPNPQGYGNGNDFLGDFNHTNLQ-IPT-EPEPESPIKLHTEAAG----SYAITEPIT 113

Query: 122 SASADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLL 160
             S ++     +            ++ LH           E L+
Sbjct: 114 RESVNII-DPRHN-----------RTVLHWIASNSSAEKSEDLI 145

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 73.0 bits (180), Expect = 1e-14
 Identities = 24/117 (20%), Positives = 47/117 (40%), Gaps = 24/117 (20%)

Query: 50  YGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGG 109
           +G R+    +       ++ +++ G   +++ +I     + +     +G TALH AV  G
Sbjct: 27  HGMRVKFNPLPL---ALLLDSSLEGEFDLVQRIIYEV-DDPS-LPNDEGITALHNAVCAG 81

Query: 110 ANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLLK 161
                E+VK L+    +VN  D  G            +PLH        +  + L++
Sbjct: 82  ---HTEIVKFLVQFGVNVNAADSDG-----------WTPLHCAASCNNVQVCKFLVE 124

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 66.1 bits (162), Expect = 2e-12
 Identities = 13/104 (12%), Positives = 30/104 (28%), Gaps = 24/104 (23%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETG-KVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLS 122
           +  +               I  G +V  N          L  +   G    F++V+ ++ 
Sbjct: 6   QVSLPPGKRTNLRKTGSERIAHGMRVKFN----PLPLALLLDSSLEG---EFDLVQRIIY 58

Query: 123 ASADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLLK 161
              D +  +  G            + LH+         ++ L++
Sbjct: 59  EVDDPSLPNDEG-----------ITALHNAVCAGHTEIVKFLVQ 91

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 65.7 bits (161), Expect = 4e-12
 Identities = 20/107 (18%), Positives = 35/107 (32%), Gaps = 19/107 (17%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTA--LHCAVAGGANSSFEVVKLLL 121
            TP+  AA   +V V K+++E+G   V     SD  TA      +  G     +  + L 
Sbjct: 104 WTPLHCAASCNNVQVCKFLVESG-AAVFAMTYSDMQTAADKCEEMEEG---YTQCSQFLY 159

Query: 122 SASADVNCVDVYGNKPVDLIPVAMKSPLH--SRKRAIELLLKGDHTI 166
                +  ++                 L     +   EL +K    +
Sbjct: 160 GVQEKMGIMNKGV-----------IYALWDYEPQNDDELPMKEGDCM 195

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 3/35 (8%), Positives = 7/35 (20%), Gaps = 3/35 (8%)

Query: 97  DGFTALHCAVAGGANSSFEVVKLLLSASADVNCVD 131
            G  +L            +     ++    V    
Sbjct: 4   TGQVSLPPGKRTN---LRKTGSERIAHGMRVKFNP 35

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 73.7 bits (182), Expect = 2e-14
 Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 5/77 (6%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
            T +  A +  +V ++K+++E G  N+N    ++G+  LH A + G     ++ + L+S 
Sbjct: 74  LTALHQACIDDNVDMVKFLVENG-ANIN-QPDNEGWIPLHAAASCG---YLDIAEYLISQ 128

Query: 124 SADVNCVDVYGNKPVDL 140
            A V  V+  G+ P+D+
Sbjct: 129 GAHVGAVNSEGDTPLDI 145

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 72.9 bits (180), Expect = 3e-14
 Identities = 25/105 (23%), Positives = 39/105 (37%), Gaps = 21/105 (20%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
            T + +AA  G   VLK +I+    +VN     DG+T LH A   G     E  ++L+  
Sbjct: 200 GTALHVAAAKGYTEVLKLLIQAR-YDVN-IKDYDGWTPLHAAAHWG---KEEACRILVEN 254

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLH-----SRKRAIELLLKGD 163
             D+  V+  G           ++              EL  K +
Sbjct: 255 LCDMEAVNKVG-----------QTAFDVADEDILGYLEELQKKQN 288

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 65.2 bits (160), Expect = 1e-11
 Identities = 25/102 (24%), Positives = 38/102 (37%), Gaps = 21/102 (20%)

Query: 65  TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
                          +++     +N        G TALH A A G     EV+KLL+ A 
Sbjct: 168 AARKEEERIMLRDARQWLNSGH-INDV-RHAKSGGTALHVAAAKG---YTEVLKLLIQAR 222

Query: 125 ADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLLK 161
            DVN  D  G            +PLH+     ++ A  +L++
Sbjct: 223 YDVNIKDYDG-----------WTPLHAAAHWGKEEACRILVE 253

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 62.5 bits (153), Expect = 8e-11
 Identities = 19/104 (18%), Positives = 32/104 (30%), Gaps = 22/104 (21%)

Query: 62  EERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLL 121
           +++    +    GS   L+  +   K         D       A + G     E V  LL
Sbjct: 7   KQKRNEQLKRWIGSETDLEPPVVKRK-KTK--VKFDDGAVFLAACSSG---DTEEVLRLL 60

Query: 122 SASADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLL 160
              AD+N  +V G            + LH          ++ L+
Sbjct: 61  ERGADINYANVDG-----------LTALHQACIDDNVDMVKFLV 93

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 57.9 bits (141), Expect = 3e-09
 Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 6/77 (7%)

Query: 62  EERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLL 121
           E   P+  AA  G + + +Y+I  G  +V  A  S+G T L  A         E+++  +
Sbjct: 105 EGWIPLHAAASCGYLDIAEYLISQG-AHVG-AVNSEGDTPLDIAEEEA---MEELLQNEV 159

Query: 122 S-ASADVNCVDVYGNKP 137
           +    D+        + 
Sbjct: 160 NRQGVDIEAARKEEERI 176

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 55.6 bits (135), Expect = 1e-08
 Identities = 14/103 (13%), Positives = 28/103 (27%), Gaps = 27/103 (26%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
            TP+ IA       +L+  +    V++          A             +  + L S 
Sbjct: 140 DTPLDIAEEEAMEELLQNEVNRQGVDIE--------AARKEEERIM---LRDARQWLNSG 188

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLLK 161
             +       G            + LH          ++LL++
Sbjct: 189 HINDVRHAKSG-----------GTALHVAAAKGYTEVLKLLIQ 220

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 74.1 bits (183), Expect = 2e-14
 Identities = 23/121 (19%), Positives = 39/121 (32%), Gaps = 25/121 (20%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGK----VNVNRACGSDGFTALHCAVAGGANSSFEVVKL 119
            TP+M A  F +   L  +++T      + ++      G + LH A+        +V   
Sbjct: 174 ETPLMRAMEFRNREALDLMMDTVPSKSSLRLD-YANKQGNSHLHWAILIN---WEDVAMR 229

Query: 120 LLSASADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLL-KGDHTIFEEEELV 173
            +    DVN  D                PL+           + LL K D  + +     
Sbjct: 230 FVEMGIDVNMEDNEH-----------TVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYH 278

Query: 174 N 174
           N
Sbjct: 279 N 279

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 74.1 bits (183), Expect = 2e-14
 Identities = 21/122 (17%), Positives = 41/122 (33%), Gaps = 38/122 (31%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETG--------------------KVNVNRACGSDGFTALH 103
           + PI +A M     ++  ++E                      ++  +      G TALH
Sbjct: 85  QKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSH-VKHCKGQTALH 143

Query: 104 CAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIEL 158
             V  G     E++K+L+   A     D              ++PL        + A++L
Sbjct: 144 WCVGLG-PEYLEMIKILVQLGASPTAKDKAD-----------ETPLMRAMEFRNREALDL 191

Query: 159 LL 160
           ++
Sbjct: 192 MM 193

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 73.7 bits (182), Expect = 3e-14
 Identities = 24/108 (22%), Positives = 36/108 (33%), Gaps = 24/108 (22%)

Query: 62  EERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLL 121
           E    I +AA  G    ++ +IETG V+        G TALH A   G     +  K L 
Sbjct: 19  ENMEKIHVAARKGQTDEVRRLIETG-VSPT-IQNRFGCTALHLACKFG---CVDTAKYLA 73

Query: 122 SASADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLL-KGD 163
           S     +     G           + P+H      +   +  L+    
Sbjct: 74  SVGEVHSLWH--G-----------QKPIHLAVMANKTDLVVALVEGAK 108

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 68.7 bits (169), Expect = 1e-12
 Identities = 12/76 (15%), Positives = 21/76 (27%), Gaps = 5/76 (6%)

Query: 62  EERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLL 121
                +  AA      VL+ + E     V     + G              +  V ++ L
Sbjct: 289 VWLDFVPAAADPSKQEVLQLLQEKL-DEVV-RSLNTGAGGAVKRKKKA---APAVKRMKL 343

Query: 122 SASADVNCVDVYGNKP 137
           + SA V        + 
Sbjct: 344 APSAPVRTRSRSRARS 359

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 65.3 bits (160), Expect = 2e-11
 Identities = 14/114 (12%), Positives = 28/114 (24%), Gaps = 30/114 (26%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACG-----------SDGFTALHCAVAGGANS 112
             P+ ++     V + K +++   V + +AC                  +  A       
Sbjct: 245 TVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPS--- 301

Query: 113 SFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLLK 161
             EV++LL     +V      G                            + L 
Sbjct: 302 KQEVLQLLQEKLDEVVRSLNTG-----------AGGAVKRKKKAAPAVKRMKLA 344

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 61.4 bits (150), Expect = 3e-10
 Identities = 11/84 (13%), Positives = 22/84 (26%), Gaps = 20/84 (23%)

Query: 83  IETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIP 142
            +  K+N       +    +H A   G     + V+ L+         + +G        
Sbjct: 6   TDFPKLNRI-KSDDENMEKIHVAARKG---QTDEVRRLIETGVSPTIQNRFGC------- 54

Query: 143 VAMKSPLHS-----RKRAIELLLK 161
               + LH           + L  
Sbjct: 55  ----TALHLACKFGCVDTAKYLAS 74

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 70.3 bits (172), Expect = 9e-14
 Identities = 23/128 (17%), Positives = 38/128 (29%), Gaps = 21/128 (16%)

Query: 65  TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
               +A       + + ++             D  TALH A + G     E+V+ LL   
Sbjct: 9   MICNLAYSGKLDELKERILADK-SLAT-RTDQDSRTALHWACSAG---HTEIVEFLLQLG 63

Query: 125 ADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLLKGDHTIFEEEELVNIPVPQ 179
             VN  D  G            SPLH          ++ LL     +    +    P+  
Sbjct: 64  VPVNDKDDAG-----------WSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHY 112

Query: 180 LSKDGTEK 187
            +     +
Sbjct: 113 AASKNRHE 120

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 63.3 bits (154), Expect = 2e-11
 Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 11/124 (8%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
           RT +  A   G   +++++++ G V VN      G++ LH A + G +   E+VK LL  
Sbjct: 41  RTALHWACSAGHTEIVEFLLQLG-VPVN-DKDDAGWSPLHIAASAGXD---EIVKALLVK 95

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLSKD 183
            A VN V+  G  P+        +   +R     +LL+G      ++      + + +  
Sbjct: 96  GAHVNAVNQNGCTPLHY------AASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAK 149

Query: 184 GTEK 187
           G  K
Sbjct: 150 GNLK 153

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 54.9 bits (132), Expect = 1e-08
 Identities = 25/124 (20%), Positives = 49/124 (39%), Gaps = 11/124 (8%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
            +P+ IAA  G   ++K ++  G  +VN A   +G T LH A +       E+  +LL  
Sbjct: 74  WSPLHIAASAGXDEIVKALLVKG-AHVN-AVNQNGCTPLHYAASKN---RHEIAVMLLEG 128

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLSKD 183
            A+ +  D Y    +        +      + + +LL    +   ++   N P+     +
Sbjct: 129 GANPDAKDHYDATAMHR------AAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDE 182

Query: 184 GTEK 187
              +
Sbjct: 183 ERVE 186

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 48.3 bits (115), Expect = 2e-06
 Identities = 10/69 (14%), Positives = 20/69 (28%), Gaps = 19/69 (27%)

Query: 97  DGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHS----- 151
                 + A +G      E+ + +L+  +     D              ++ LH      
Sbjct: 6   SNIMICNLAYSGK---LDELKERILADKSLATRTDQDS-----------RTALHWACSAG 51

Query: 152 RKRAIELLL 160
               +E LL
Sbjct: 52  HTEIVEFLL 60

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 47.9 bits (114), Expect = 3e-06
 Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 7/67 (10%)

Query: 62  EERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLL 121
           E  TP+ +A     V   K+++  G  ++      +  T L  A          ++   L
Sbjct: 171 EGNTPLHLACDEERVEEAKFLVTQG-ASIY-IENKEEKTPLQVA-----KGGLGLILKRL 223

Query: 122 SASADVN 128
           +   + +
Sbjct: 224 AEGEEAS 230

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 69.4 bits (170), Expect = 2e-13
 Identities = 24/143 (16%), Positives = 40/143 (27%), Gaps = 30/143 (20%)

Query: 38  EKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVN-RACGS 96
           E G DV   +     +       +    P+ +AA      V+ Y++E      +  A  S
Sbjct: 111 ENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDS 170

Query: 97  DGFTALHCAVAGGANSS-------------FEVVKLLLSASADVNCVDVYGNKPVDLIPV 143
            G T LH  V    NS               ++   L          +  G         
Sbjct: 171 LGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGL-------- 222

Query: 144 AMKSPLHS-----RKRAIELLLK 161
              +PL       +      +L+
Sbjct: 223 ---TPLKLAAKEGKIEIFRHILQ 242

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 57.9 bits (140), Expect = 2e-09
 Identities = 22/101 (21%), Positives = 36/101 (35%), Gaps = 17/101 (16%)

Query: 64  RTPIMIAAMF---GSVAVLKYVIETGKVNVN---------RACGSDGFTALHCAVAGGAN 111
           +T +M A +    G  A +  +++  K + N               G +ALH A+     
Sbjct: 44  KTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKR-- 101

Query: 112 SSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAM--KSPLH 150
            S + VKLL+   ADV+                   + PL 
Sbjct: 102 -SLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLS 141

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 56.7 bits (137), Expect = 4e-09
 Identities = 21/111 (18%), Positives = 34/111 (30%), Gaps = 13/111 (11%)

Query: 63  ERTPIMIAAMFGSVA----VLKYVIETGK---VNVNRACGSDGFTALHCAVAGGANSSFE 115
           +R  +      G       +L+Y+    K    +     GS G T L  AV    +    
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTE-GSTGKTCLMKAVLNLQDGVNA 60

Query: 116 VVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLLK 161
            +  LL    D        N           S LH        + ++LL++
Sbjct: 61  CIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVE 111

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 54.8 bits (132), Expect = 2e-08
 Identities = 11/74 (14%), Positives = 23/74 (31%), Gaps = 5/74 (6%)

Query: 62  EERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLL 121
            E + ++I    G + +   +  T +          G T L  A   G     E+ + +L
Sbjct: 187 PENSALVIHMYDGLLQMGARLCPTVQ-LEE-ISNHQGLTPLKLAAKEG---KIEIFRHIL 241

Query: 122 SASADVNCVDVYGN 135
                      + +
Sbjct: 242 QREFSGAAAHHHHH 255

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 68.7 bits (168), Expect = 7e-13
 Identities = 18/110 (16%), Positives = 37/110 (33%), Gaps = 11/110 (10%)

Query: 63  ERTPIMIAAMFGSVA----VLKYVIETGK--VNVNRACGSDGFTALHCAVAGGANSSFEV 116
           +R  I  A    +      +L ++  + K   +        G T L  A+    N   + 
Sbjct: 13  DRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDT 72

Query: 117 VKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLLK 161
           + LLL  +   + +  + N          ++ LH          + LL++
Sbjct: 73  IALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVE 122

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 59.0 bits (143), Expect = 9e-10
 Identities = 24/144 (16%), Positives = 45/144 (31%), Gaps = 31/144 (21%)

Query: 38  EKGFDVDEPSFWYGRRIGSKKMGFEE-RTPIMIAAMFGSVAVLKYVIETGKVNVN-RACG 95
           E G DV   +     +    + GF     P+ +AA    +A++K++++      +  A  
Sbjct: 122 ENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARD 181

Query: 96  SDGFTALHCAVAGGANSSF-------------EVVKLLLSASADVNCVDVYGNKPVDLIP 142
           S G T LH  V    N+                +   L          +  G        
Sbjct: 182 SVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKG-------- 233

Query: 143 VAMKSPLHS-----RKRAIELLLK 161
               +PL       +   +  +L+
Sbjct: 234 ---LTPLALAASSGKIGVLAYILQ 254

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 57.1 bits (138), Expect = 4e-09
 Identities = 19/102 (18%), Positives = 34/102 (33%), Gaps = 18/102 (17%)

Query: 64  RTPIMIAAMF---GSVAVLKYVIETGK--------VNVN-RACGSDGFTALHCAVAGGAN 111
           +T ++ A +    G    +  +++  +        VN +       G TALH A+     
Sbjct: 55  KTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERR-- 112

Query: 112 SSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAM---KSPLH 150
            +  +V LL+   ADV                     + PL 
Sbjct: 113 -NMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLS 153

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 41.7 bits (98), Expect = 4e-04
 Identities = 9/79 (11%), Positives = 19/79 (24%), Gaps = 17/79 (21%)

Query: 64  RTPIMIAAMFG---------SVAVLKYVIETGK-VNVNRACGS----DGFTALHCAVAGG 109
            T +                  ++   ++  G  ++            G T L  A + G
Sbjct: 185 NTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSG 244

Query: 110 ANSSFEVVKLLLSASADVN 128
                 V+  +L       
Sbjct: 245 ---KIGVLAYILQREIHEP 260

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 40.9 bits (96), Expect = 7e-04
 Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 9/46 (19%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGG 109
            TP+ +AA  G + VL Y+++                  H A    
Sbjct: 234 LTPLALAASSGKIGVLAYILQREI---------HEPECRHAAAHHH 270

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 67.2 bits (165), Expect = 9e-13
 Identities = 22/109 (20%), Positives = 42/109 (38%), Gaps = 15/109 (13%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACG----SDGFTALHCAVAGGANSSFEVVKL 119
            T + IAA++ ++     ++E     +          +G TALH AV    N +  +V+ 
Sbjct: 38  ETALHIAALYDNLEAAMVLMEAA-PELVFEPMTSELYEGQTALHIAV---INQNVNLVRA 93

Query: 120 LLSASADVNCVDVYGNKPVDLIPVAM--KSPLHS-----RKRAIELLLK 161
           LL+  A V+              +    + PL        +  + LL++
Sbjct: 94  LLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIE 142

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 65.3 bits (160), Expect = 4e-12
 Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 27/99 (27%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVN------------RACGSDGFTALHCAVAGGAN 111
           +T + IA +  +V +++ ++  G  +V+                  G   L  A   G  
Sbjct: 76  QTALHIAVINQNVNLVRALLARG-ASVSARATGSVFHYRPHNLIYYGEHPLSFAACVG-- 132

Query: 112 SSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLH 150
            S E+V+LL+   AD+   D  GN           + LH
Sbjct: 133 -SEEIVRLLIEHGADIRAQDSLGN-----------TVLH 159

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 63.8 bits (156), Expect = 1e-11
 Identities = 23/108 (21%), Positives = 40/108 (37%), Gaps = 27/108 (25%)

Query: 65  TPIMIAAMFGSV-AVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
           +P+++AA    V A+ K +   G   V+   G+ G TALH A       + E   +L+ A
Sbjct: 5   SPLLLAAKENDVQALSKLLKFEG-CEVH-QRGAMGETALHIAAL---YDNLEAAMVLMEA 59

Query: 124 SADV-----NCVDVYGNKPVDLIPVAMKSPLHS-----RKRAIELLLK 161
           + ++           G           ++ LH          +  LL 
Sbjct: 60  APELVFEPMTSELYEG-----------QTALHIAVINQNVNLVRALLA 96

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 60.7 bits (148), Expect = 2e-10
 Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 25/135 (18%)

Query: 38  EKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSD 97
            +G  V   +           + +    P+  AA  GS  +++ +IE G  ++  A  S 
Sbjct: 96  ARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHG-ADIR-AQDSL 153

Query: 98  GFTALHCAVAGG-ANSSFEVVKLLLSASADVN------CVDVYGNKPVDLIPVAMKSPLH 150
           G T LH  +       + ++  LLLS     +        +  G            +P  
Sbjct: 154 GNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQG-----------LTPFK 202

Query: 151 -----SRKRAIELLL 160
                      + L+
Sbjct: 203 LAGVEGNIVMFQHLM 217

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 48.0 bits (115), Expect = 3e-06
 Identities = 12/69 (17%), Positives = 21/69 (30%), Gaps = 18/69 (26%)

Query: 98  GFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHS-----R 152
             + L  A     N    + KLL     +V+     G           ++ LH       
Sbjct: 3   WESPLLLAAK--ENDVQALSKLLKFEGCEVHQRGAMG-----------ETALHIAALYDN 49

Query: 153 KRAIELLLK 161
             A  +L++
Sbjct: 50  LEAAMVLME 58

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 63.5 bits (155), Expect = 9e-12
 Identities = 16/114 (14%), Positives = 32/114 (28%), Gaps = 22/114 (19%)

Query: 65  TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANS---SFEVVKLLL 121
             +          +  ++I  G  ++  +   +G T       GG N    + E+ K+ L
Sbjct: 44  DVLRNNNDEARYKISMFLINKG-ADIK-SRTKEGTTLFFPLFQGGGNDITGTTELCKIFL 101

Query: 122 SASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNI 175
              AD+  +               K  +    + I           E   L  +
Sbjct: 102 EKGADITALYKPY-----------KIVVF---KNIF---NYFVDENEMIPLYKL 138

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 62.8 bits (153), Expect = 1e-11
 Identities = 17/115 (14%), Positives = 33/115 (28%), Gaps = 21/115 (18%)

Query: 62  EERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGA-NSSFEVVKLL 120
            E   +  AAM G+      + E G      +        L+  +      + +++   L
Sbjct: 5   SEYRTVSAAAMLGTYEDFLELFEKG-YEDKES--VLKSNILYDVLRNNNDEARYKISMFL 61

Query: 121 LSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNI 175
           ++  AD+      G            +         +    G + I    EL  I
Sbjct: 62  INKGADIKSRTKEGT-----------TLFF---PLFQ---GGGNDITGTTELCKI 99

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 59.3 bits (144), Expect = 2e-10
 Identities = 13/113 (11%), Positives = 31/113 (27%), Gaps = 28/113 (24%)

Query: 64  RTPIMIAAMFG------SVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFE-- 115
            T        G      +  + K  +E G  ++  A        +   +        E  
Sbjct: 76  TTLFFPLFQGGGNDITGTTELCKIFLEKG-ADIT-ALYKPYKIVVFKNIFNYFVDENEMI 133

Query: 116 -VVKLLL-SASADVNCVDVYGNKPVDLIPVAMKSPLH-----SRKRAIELLLK 161
            + KL+   +   +   D +G            + L       +  A++++  
Sbjct: 134 PLYKLIFSQSGLQLLIKDKWG-----------LTALEFVKRCQKPIALKMMED 175

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 58.1 bits (141), Expect = 5e-10
 Identities = 8/74 (10%), Positives = 18/74 (24%), Gaps = 10/74 (13%)

Query: 64  RTPIMIAAMFGSV------AVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVV 117
           +  +        V       + K +     + +       G TAL              +
Sbjct: 115 KIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLL-IKDKWGLTALEFVKRCQ---KPIAL 170

Query: 118 KLLLSASADVNCVD 131
           K++       N  +
Sbjct: 171 KMMEDYIKKYNLKE 184

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens} Length = 89

 Score = 59.8 bits (144), Expect = 2e-11
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 5/60 (8%)

Query: 254 CPEFRKGACPKGDG-CEYAHGVFESWLHPAQYRTRLCKDEI--GCARKVCFFAHKPEELR 310
           C +F++G C + D  C++AH      +     R   C D +   C+R+ C + H P  L+
Sbjct: 20  CRQFQRGTCSRSDEECKFAHPPKSCQVENG--RVIACFDSLKGRCSRENCKYLHPPTHLK 77

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 62.9 bits (153), Expect = 5e-11
 Identities = 31/147 (21%), Positives = 48/147 (32%), Gaps = 37/147 (25%)

Query: 38  EKGFDVDE----PSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVN-R 92
           EKG DV        F      G    G     P+ +AA      ++ Y+ E G    + R
Sbjct: 114 EKGADVHAQARGRFFQPKDEGGYFYFG---ELPLSLAACTNQPHIVHYLTENGHKQADLR 170

Query: 93  ACGSDGFTALHCAVAGGANS------SFEVVKLLLSASADVNC-------VDVYGNKPVD 139
              S G T LH  VA   N+        ++  LLL   A +         ++  G     
Sbjct: 171 RQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDG----- 225

Query: 140 LIPVAMKSPLHS-----RKRAIELLLK 161
                  SPL       +    + +++
Sbjct: 226 ------LSPLMMAAKTGKIGIFQHIIR 246

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 59.4 bits (144), Expect = 6e-10
 Identities = 20/110 (18%), Positives = 40/110 (36%), Gaps = 13/110 (11%)

Query: 64  RTPIMIAAMFGSVA----VLKYVIETGKVNVN---RACGSDGFTALHCAVAGGANSSFEV 116
           R  +      GS      +L +++   K  +        S G T L  A+   +    + 
Sbjct: 6   RPILFDIVSRGSPDGLEGLLSFLLTHKK-RLTDEEFREPSTGKTCLPKALLNLSAGRNDT 64

Query: 117 VKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLH-----SRKRAIELLLK 161
           + +LL  +     +  + N P   +    ++ LH       K  +ELL++
Sbjct: 65  IPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVE 114

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 55.9 bits (135), Expect = 1e-08
 Identities = 20/118 (16%), Positives = 38/118 (32%), Gaps = 23/118 (19%)

Query: 64  RTPIMIAAM---FGSVAVLKYVIETGK--------VNVN-RACGSDGFTALHCAVAGGAN 111
           +T +  A +    G    +  +++  +        +N   R     G TALH A+     
Sbjct: 47  KTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIE---R 103

Query: 112 SSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAM---KSPLH-----SRKRAIELLLK 161
                V+LL+   ADV+                    + PL      ++   +  L +
Sbjct: 104 RCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE 161

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 41.3 bits (97), Expect = 5e-04
 Identities = 14/87 (16%), Positives = 24/87 (27%), Gaps = 16/87 (18%)

Query: 100 TALHCAVAGGANSSF-EVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHS------- 151
             L   V+ G+      ++  LL+    +   +              K+ L         
Sbjct: 7   PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPS-------TGKTCLPKALLNLSA 59

Query: 152 -RKRAIELLLKGDHTIFEEEELVNIPV 177
            R   I +LL          E +N P 
Sbjct: 60  GRNDTIPILLDIAEKTGNMREFINSPF 86

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 63.1 bits (153), Expect = 6e-11
 Identities = 17/113 (15%), Positives = 36/113 (31%), Gaps = 26/113 (23%)

Query: 39  KGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDG 98
              +++ P   +G             TP+       ++ ++K++++ G  N      + G
Sbjct: 119 TQLNLNIPVDEHGN------------TPLHWLTSIANLELVKHLVKHG-SNRL-YGDNMG 164

Query: 99  FTALHCAVAGGANSSFEVVKLLLSA-SADVNCVDVYGNKPVDLIPVAMKSPLH 150
            + L  AV    N      + LL      +   D              ++ LH
Sbjct: 165 ESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMN-----------RTILH 206

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 57.3 bits (138), Expect = 4e-09
 Identities = 17/91 (18%), Positives = 28/91 (30%), Gaps = 6/91 (6%)

Query: 78  VLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKP 137
           V      T  +N+N      G T LH   +     + E+VK L+   ++    D  G   
Sbjct: 112 VNDAFPNTQ-LNLNIPVDEHGNTPLHWLTSIA---NLELVKHLVKHGSNRLYGDNMGESC 167

Query: 138 VDLIPVAMKSPLHSRKRAIELLLKGDHTIFE 168
             L+        +       LL      +  
Sbjct: 168 --LVKAVKSVNNYDSGTFEALLDYLYPCLIL 196

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 52.0 bits (124), Expect = 3e-07
 Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 7/82 (8%)

Query: 63  ERTPIMIAAMFGSVAVLKYVIETG---KVNVNRACGSDGFTALHCAVAGGANSSFEVVKL 119
           E+              +   ++        +N A  S+G T L+ A       +  +V  
Sbjct: 246 EKESKPNDKNGERKDSILENLDLKWIIANMLN-AQDSNGDTCLNIAAR---LGNISIVDA 301

Query: 120 LLSASADVNCVDVYGNKPVDLI 141
           LL   AD    +  G +PVD  
Sbjct: 302 LLDYGADPFIANKSGLRPVDFG 323

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Length = 72

 Score = 57.2 bits (138), Expect = 1e-10
 Identities = 17/76 (22%), Positives = 24/76 (31%), Gaps = 10/76 (13%)

Query: 238 NARRRDPRKYPYTCVPCPEFRKGACPKGDGCEYAHGVFESWLHPAQYRTRLCKDEI---G 294
           +             V C  + +G C KGD CE+ H            +   C        
Sbjct: 3   HHHHHHSHMSGEKTVVCKHWLRGLCKKGDQCEFLH-------EYDMTKMSECYFYSKFGE 55

Query: 295 CARKVCFFAHKPEELR 310
           C+ K C F H   E +
Sbjct: 56  CSNKECPFLHIDPESK 71

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 61.9 bits (150), Expect = 2e-10
 Identities = 11/72 (15%), Positives = 21/72 (29%), Gaps = 3/72 (4%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
                +AA  G + VL  + E     +     ++ + A   A   G      V+  L   
Sbjct: 129 YQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENG---HLHVLNRLCEL 185

Query: 124 SADVNCVDVYGN 135
           +       +   
Sbjct: 186 APTEATAMIQAE 197

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 57.3 bits (138), Expect = 8e-09
 Identities = 15/106 (14%), Positives = 30/106 (28%), Gaps = 6/106 (5%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
                +AA  G + VL  + E           ++ + A   A  G       V+  LL  
Sbjct: 164 YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVG--RGHHNVINFLLDC 221

Query: 124 SADVNCVDVYGNKPVDLIPVA----MKSPLHSRKRAIELLLKGDHT 165
              +   +++  +  +           + L     A +L       
Sbjct: 222 PVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVF 267

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 54.2 bits (130), Expect = 6e-08
 Identities = 12/81 (14%), Positives = 25/81 (30%), Gaps = 8/81 (9%)

Query: 58  KMGFEERTPIMIAAMFGS---VAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSF 114
           K G +      +AA+ G    +  L  ++ +    V     ++ + A   A   G     
Sbjct: 87  KKGIKSEVICFVAAITGCSSALDTLCLLLTSD-EIVK-VIQAENYQAFRLAAENG---HL 141

Query: 115 EVVKLLLSASADVNCVDVYGN 135
            V+  L   +       +   
Sbjct: 142 HVLNRLCELAPTEIMAMIQAE 162

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 46.5 bits (110), Expect = 2e-05
 Identities = 8/74 (10%), Positives = 20/74 (27%), Gaps = 11/74 (14%)

Query: 65  TPIMIAAMFGS---VAVLKYVIETGKV----NVNRACGSDGFTALHCAVAGGANSSFEVV 117
             +           +  +++++    +            D    L  A+  G   +    
Sbjct: 280 YMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTA-TIPGDANELLRLALRLG---NQGAC 335

Query: 118 KLLLSASADVNCVD 131
            LLLS  + +    
Sbjct: 336 ALLLSIPSVLALTK 349

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 17/107 (15%), Positives = 28/107 (26%), Gaps = 26/107 (24%)

Query: 69  IAAMFGSVAVLKYVIETGKVN-----VNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
           IA     +  +    +    +     V ++    GF  L   +        + ++ LLS 
Sbjct: 244 IARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSI 303

Query: 124 S-----ADVNCVDVYGNKPVDLIPVAMKSPLH--SRKR---AIELLL 160
                 A    +    N             L    R     A  LLL
Sbjct: 304 PGIKALAPTATIPGDAN-----------ELLRLALRLGNQGACALLL 339

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 41.9 bits (98), Expect = 4e-04
 Identities = 10/82 (12%), Positives = 22/82 (26%), Gaps = 5/82 (6%)

Query: 56  SKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFE 115
                 E+   ++           K +            G         A   G +S+ +
Sbjct: 55  PGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKK-----GIKSEVICFVAAITGCSSALD 109

Query: 116 VVKLLLSASADVNCVDVYGNKP 137
            + LLL++   V  +     + 
Sbjct: 110 TLCLLLTSDEIVKVIQAENYQA 131

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens} Length = 83

 Score = 55.9 bits (134), Expect = 3e-10
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 254 CPEFRKGACPKGDG-CEYAHGVFESWLHPAQYRTRLCKD--EIGCARKVCFFAHKPEELR 310
           C EF++G C + D  C++AH      +     R   C D  +  C+R+ C + H P  L+
Sbjct: 12  CREFQRGTCSRPDTECKFAHPSKSCQVENG--RVIACFDSLKGRCSRENCKYLHPPPHLK 69

Query: 311 PVYASTGS 318
                 G 
Sbjct: 70  TQLEINGR 77

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 55.7 bits (134), Expect = 3e-10
 Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 7/67 (10%)

Query: 249 YTCVPCPEFRK-GACPKGDGCEYAHGVFE--SWLHPAQYRTRLCKD---EIGCAR-KVCF 301
           Y    C  + + G C  G  C++AHG+ E        +Y+T LC     +  C     C 
Sbjct: 10  YKTELCRTYSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFKLQGRCPYGSRCH 69

Query: 302 FAHKPEE 308
           F H P E
Sbjct: 70  FIHNPTE 76

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 77

 Score = 51.1 bits (122), Expect = 1e-08
 Identities = 18/73 (24%), Positives = 25/73 (34%), Gaps = 14/73 (19%)

Query: 252 VPCPEFRKGACPKGDGCEYAHGVFESWLHPAQYRTRLCKDEI---GCARKVCFFAHKPEE 308
           V C  + +G C KGD CE+ H            +   C        C+ K C F H   E
Sbjct: 11  VVCKHWLRGLCKKGDQCEFLH-------EYDMTKMPECYFYSKFGECSNKECPFLHIDPE 63

Query: 309 LR----PVYASTG 317
            +    P    + 
Sbjct: 64  SKIKDCPWSGPSS 76

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Length = 98

 Score = 46.2 bits (109), Expect = 1e-06
 Identities = 20/93 (21%), Positives = 27/93 (29%), Gaps = 18/93 (19%)

Query: 239 ARRRDPRKYPYTCVPCPEFRKGACPKGDGCEYAHGVFESWLHPAQYRTRLCKD--EIG-C 295
                  + P     C  +  G C + + C Y HG F             CK     G C
Sbjct: 1   GSSGSSGELPKKRELCKFYITGFCARAENCPYMHGDFP------------CKLYHTTGNC 48

Query: 296 AR-KVCFFAHKP--EELRPVYASTGSAMPSPSP 325
                C F+H P  EE R +     +       
Sbjct: 49  INGDDCMFSHDPLTEETRELLDKMLADDAEAGA 81

>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C} Length = 80

 Score = 42.6 bits (100), Expect = 2e-05
 Identities = 16/83 (19%), Positives = 24/83 (28%), Gaps = 27/83 (32%)

Query: 229 ECPFVHPGENARRRDPRKYPYTCVPCPEFRKGACPKGDGCEYAHGVFESWLHPAQYRTRL 288
            C + H   +             + C E     C + D C + H        P       
Sbjct: 22  RCKYRHARSH-------------IMCREG--ANCTRID-CLFGH--------PIN---ED 54

Query: 289 CKDEIGCARKVCFFAHKPEELRP 311
           C+  + C    C F H P  + P
Sbjct: 55  CRFGVNCKNIYCLFRHPPGRVLP 77

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 45.0 bits (106), Expect = 4e-05
 Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 6/79 (7%)

Query: 84  ETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPV 143
           + G+        +     LH AV     +S  +V  ++     ++     GN  +     
Sbjct: 176 DFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHY--- 232

Query: 144 AMKSPLHSRKRAIELLLKG 162
              + L+++   ++LLLKG
Sbjct: 233 ---AALYNQPDCLKLLLKG 248

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 41.5 bits (97), Expect = 5e-04
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 3/45 (6%)

Query: 96  SDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDL 140
           +DG TALH A         + +KLLL   A V  V+  G   +D+
Sbjct: 224 ADGNTALHYAALYN---QPDCLKLLLKGRALVGTVNEAGETALDI 265

>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 39.1 bits (91), Expect = 2e-04
 Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 2/34 (5%)

Query: 254 CPEFRKGACPKGDGCEYAHGVFE--SWLHPAQYR 285
           C  +  G CP+G+ C++AHG  E   W       
Sbjct: 23  CDRYMNGTCPEGNSCKFAHGNAELHEWEERRDAL 56

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 2e-04
 Identities = 57/374 (15%), Positives = 106/374 (28%), Gaps = 142/374 (37%)

Query: 389 LKTAFSARDLDLLLGLENRTSN-------LQQQQ------------------LLDEISSL 423
            K+  S  ++D ++  ++  S        L  +Q                  L+  I + 
Sbjct: 42  PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE 101

Query: 424 S-SPSSWSKEYSRIGD-------------VNR-----NLDKVFESLDPSMLSQLQGM--S 462
              PS  ++ Y    D             V+R      L +    L P+    + G+  S
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS 161

Query: 463 QKQ--------STPTQLQSPTG---------------LQMRQNM-NQLRASYPAANLSSS 498
            K         S   Q +                   L+M Q +  Q+  ++ + +  SS
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221

Query: 499 PVRKPSSFG------------YDSSAAVAAAVMNSRS-SAF---AK-----RSQSFIDRG 537
            ++                  Y++   V   V N+++ +AF    K     R +   D  
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL 281

Query: 538 AVTSRAGLSMVSNPPTIRSSN----LSDW--------------SSP-----------DGK 568
           +  +   +S+  +  T+        L  +              ++P           DG 
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341

Query: 569 LDWG----VQGDELNKLKKSA--------------SFG-FRSN-NITTPTTKGFTPSSSN 608
             W     V  D+L  + +S+                  F  + +I T            
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK 401

Query: 609 VDEPDVSWVNSLVK 622
            D   V  VN L K
Sbjct: 402 SDVMVV--VNKLHK 413

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 6/79 (7%)

Query: 64  RTPIMIAAMFGSVAVLKYV--IETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLL 121
            T + +A        L  V  +     N+++     G TALH         + E +KLLL
Sbjct: 170 ETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQT-GKGSTALHYCCLTD---NAECLKLLL 225

Query: 122 SASADVNCVDVYGNKPVDL 140
              A +   +  G  P+D+
Sbjct: 226 RGKASIEIANESGETPLDI 244

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 43.0 bits (101), Expect = 3e-04
 Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 16/74 (21%)

Query: 94  CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLH--- 150
             +     LH AV     +S  +V  ++     ++     GN           + LH   
Sbjct: 167 AQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGN-----------TALHYAA 215

Query: 151 --SRKRAIELLLKG 162
             ++   ++LLLKG
Sbjct: 216 LYNQPDCLKLLLKG 229

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 41.7 bits (97), Expect = 5e-04
 Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 5/90 (5%)

Query: 51  GRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGA 110
           G  +     G +  TP++ A    S+   +++++ G  NVN    S G   LH A   G 
Sbjct: 223 GADVNWVNGGQDNATPLIQATAANSLLACEFLLQNG-ANVN-QADSAGRGPLHHATILG- 279

Query: 111 NSSFEVVKLLLSASADVNCVDVYGNKPVDL 140
                +  L L   AD+   D  G  P+ +
Sbjct: 280 --HTGLACLFLKRGADLGARDSEGRDPLTI 307

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	655
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.92
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.91
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.9
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.89
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.89
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.89
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.88
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.88
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.88
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.88
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.88
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.88
2rfa_A	232	Transient receptor potential cation channel subfa	99.87
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.87
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.87
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.87
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.87
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.87
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.86
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.86
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.86
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.86
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.86
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.86
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.86
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.86
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.86
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.85
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.85
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.85
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.85
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.85
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.85
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.85
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.85
2rfa_A	232	Transient receptor potential cation channel subfa	99.85
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.85
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.85
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.84
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.84
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.84
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.84
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.84
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.84
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.84
2etb_A	256	Transient receptor potential cation channel subfam	99.83
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.83
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.83
2etb_A	256	Transient receptor potential cation channel subfam	99.83
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.83
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.83
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.83
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.83
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.83
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.83
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.83
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.83
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.83
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.83
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.83
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.83
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.82
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.82
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.82
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.82
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.82
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.82
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.82
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.82
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.82
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.81
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.81
2pnn_A	273	Transient receptor potential cation channel subfa	99.81
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.81
2pnn_A	273	Transient receptor potential cation channel subfa	99.81
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.81
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.81
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.8
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.8
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.8
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.8
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.8
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.8
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.79
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.79
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.79
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.79
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.79
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.78
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.78
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.78
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.77
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.77
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.76
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.76
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.76
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.76
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.75
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.75
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.73
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.72
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.72
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.71
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.7
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.69
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.69
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.66
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.59
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.58
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.56
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.55
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.54
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.52
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.48
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	98.97
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	98.61
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	98.07
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	97.99
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	97.86
2d9m_A	69	Zinc finger CCCH-type domain containing protein 7A	97.77
2rhk_C	72	Cleavage and polyadenylation specificity factor su	97.6
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	97.37
2rpp_A	89	Muscleblind-like protein 2; zinc finger domain, C3	97.06
2d9m_A	69	Zinc finger CCCH-type domain containing protein 7A	97.05
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	96.91
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	90.67
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	89.56
2rhk_C	72	Cleavage and polyadenylation specificity factor su	88.65
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	88.36
2lhn_A	80	Nuclear polyadenylated RNA-binding protein NAB2; n	85.3
2fc6_A	50	Nuclear, target of EGR1, member 1; structure genom	83.63
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	83.27
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	82.45
2lhn_A	80	Nuclear polyadenylated RNA-binding protein NAB2; n	83.06

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.92  E-value=8.2e-25  Score=210.33  Aligned_cols=141  Identities=33%  Similarity=0.433  Sum_probs=132.3

Q ss_pred             hHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccCCC
Q 006236           18 SILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSD   97 (655)
Q Consensus        18 s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~~   97 (655)
                      ..|+.||..|+.+.|+.||+ .|+|||.++             .+|+||||+|+..++.+++++|++.| +|++.+ +.+
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~-~Gadvn~~d-------------~~g~t~l~~a~~~~~~~~~~~ll~~g-ad~~~~-d~~   69 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIE-NGADVNASD-------------SDGRTPLHHAAENGHKEVVKLLISKG-ADVNAK-DSD   69 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHH-TTCCTTCCC-------------TTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCC-CTT
T ss_pred             HHHHHHHHcCCHHHHHHHHH-CCCCCCCcC-------------CCCCCHHHHHHHcCCHHHHHHHHhcc-cchhhh-ccC
Confidence            57999999999999998886 899999985             89999999999999999999999999 999998 999


Q ss_pred             CChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccCCCCc
Q 006236           98 GFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPV  177 (655)
Q Consensus        98 G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~tpl  177 (655)
                      |+||||+|+..|+   .++|++||++|+|+|.+|.+|+||||+|+.      .++.+++++||++|++++.+|.+|.||+
T Consensus        70 g~TpLh~A~~~g~---~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~------~g~~~~v~~Ll~~gad~~~~d~~G~TpL  140 (169)
T 4gpm_A           70 GRTPLHHAAENGH---KEVVKLLISKGADVNAKDSDGRTPLHHAAE------NGHKEVVKLLISKGADVNTSDSDGRTPL  140 (169)
T ss_dssp             SCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHH------TTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             CCCHHHHHHHcCC---HHHHHHHHHCcCCCCCCCCCCCCHHHHHHH------cCCHHHHHHHHHcCCCccccCCCCCCHH
Confidence            9999999999999   999999999999999999999999999997      8999999999999999999999999998


Q ss_pred             cccccc
Q 006236          178 PQLSKD  183 (655)
Q Consensus       178 ~~l~~~  183 (655)
                      ..+...
T Consensus       141 ~~A~~~  146 (169)
T 4gpm_A          141 DLAREH  146 (169)
T ss_dssp             HHHHHT
T ss_pred             HHHHHc
Confidence            665443

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.91  E-value=6.3e-24  Score=204.15  Aligned_cols=130  Identities=36%  Similarity=0.440  Sum_probs=118.1

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA   93 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~   93 (655)
                      ..|.|+|+.|+..+..+.++.+|. .|++++.++             .+|+||||+|+..|+.+++++||+.| +|+|.+
T Consensus        35 ~~g~t~l~~a~~~~~~~~~~~ll~-~gad~~~~d-------------~~g~TpLh~A~~~g~~~~v~~Ll~~g-advn~~   99 (169)
T 4gpm_A           35 SDGRTPLHHAAENGHKEVVKLLIS-KGADVNAKD-------------SDGRTPLHHAAENGHKEVVKLLISKG-ADVNAK   99 (169)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCC-------------TTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHh-cccchhhhc-------------cCCCCHHHHHHHcCCHHHHHHHHHCc-CCCCCC
Confidence            568999999999999998887776 899999985             89999999999999999999999999 999999


Q ss_pred             cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCc
Q 006236           94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFE  168 (655)
Q Consensus        94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~  168 (655)
                       |.+|+||||+|+..|+   .++|++|+++|+|++.+|.+|+||||+|+.      .++.+++++|+++||+++.
T Consensus       100 -d~~G~TpLh~A~~~g~---~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~------~g~~~iv~~Ll~~GA~ie~  164 (169)
T 4gpm_A          100 -DSDGRTPLHHAAENGH---KEVVKLLISKGADVNTSDSDGRTPLDLARE------HGNEEVVKLLEKQGGWLEH  164 (169)
T ss_dssp             -CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHH------TTCHHHHHHHHTC------
T ss_pred             -CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCccccCCCCCCHHHHHHH------cCCHHHHHHHHHCCCCcCC
Confidence             9999999999999999   999999999999999999999999999997      8999999999999999973

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.90  E-value=1.5e-23  Score=196.75  Aligned_cols=144  Identities=23%  Similarity=0.369  Sum_probs=134.4

Q ss_pred             CCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccc
Q 006236           15 NKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRAC   94 (655)
Q Consensus        15 ~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~   94 (655)
                      ++.++|+.|+..|+.+.++.+|...+.+++..             +..|.||||+|+..|+.+++++|++.| ++++.. 
T Consensus         7 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~-   71 (165)
T 3twr_A            7 EADRQLLEAAKAGDVETVKKLCTVQSVNCRDI-------------EGRQSTPLHFAAGYNRVSVVEYLLQHG-ADVHAK-   71 (165)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCT-------------TTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCC-
T ss_pred             hhhHHHHHHHHhCCHHHHHHHHHcCCCCcccc-------------ccCCCCHHHHHHHcChHHHHHHHHhcC-CCCCcc-
Confidence            45799999999999999999998777777766             478999999999999999999999999 999998 


Q ss_pred             CCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccCC
Q 006236           95 GSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVN  174 (655)
Q Consensus        95 d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~  174 (655)
                      +..|.||||+|+..|+   .+++++|+++|++++.+|..|.||||+|+.      .++.+++++|+++|++++.+|.+|.
T Consensus        72 ~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~------~~~~~~v~~Ll~~ga~~~~~~~~g~  142 (165)
T 3twr_A           72 DKGGLVPLHNACSYGH---YEVAELLVKHGAVVNVADLWKFTPLHEAAA------KGKYEICKLLLQHGADPTKKNRDGN  142 (165)
T ss_dssp             CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTCCCHHHHHHH------TTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             CCCCCCHHHHHHHcCc---HHHHHHHHhCCCCCCCcCCCCCCHHHHHHH------cCCHHHHHHHHHcCCCCcccCCCCC
Confidence            9999999999999999   999999999999999999999999999997      8999999999999999999999999


Q ss_pred             CCcccccc
Q 006236          175 IPVPQLSK  182 (655)
Q Consensus       175 tpl~~l~~  182 (655)
                      +|+..+..
T Consensus       143 t~l~~a~~  150 (165)
T 3twr_A          143 TPLDLVKD  150 (165)
T ss_dssp             CTGGGSCT
T ss_pred             ChhHhHhc
Confidence            99877543

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.89  E-value=7.4e-23  Score=195.11  Aligned_cols=144  Identities=20%  Similarity=0.242  Sum_probs=133.6

Q ss_pred             CCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccc
Q 006236           15 NKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRAC   94 (655)
Q Consensus        15 ~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~   94 (655)
                      .+.++|+.|+..|+.+.++.+|...+.+++..+             ..|+||||+|+..|+.+++++|++.| ++++.. 
T Consensus         4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~-------------~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~-   68 (179)
T 3f6q_A            4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGD-------------DHGFSPLHWACREGRSAVVEMLIMRG-ARINVM-   68 (179)
T ss_dssp             ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCC-------------TTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCC-
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhcCcccccccC-------------CCCCCHHHHHHHcCcHHHHHHHHHcC-CCCCCc-
Confidence            356889999999999999999997788898874             88999999999999999999999999 999998 


Q ss_pred             CCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccCC
Q 006236           95 GSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVN  174 (655)
Q Consensus        95 d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~  174 (655)
                      +..|.||||+|+..|+   .+++++|+++|++++.+|..|.||||+|+.      .++.+++++|+++|++++.+|..|.
T Consensus        69 ~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~------~~~~~~v~~Ll~~ga~~~~~~~~g~  139 (179)
T 3f6q_A           69 NRGDDTPLHLAASHGH---RDIVQKLLQYKADINAVNEHGNVPLHYACF------WGQDQVAEDLVANGALVSICNKYGE  139 (179)
T ss_dssp             CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHH------TTCHHHHHHHHHTTCCSSBCCTTSC
T ss_pred             CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCccCCCCCCHHHHHHH------cCCHHHHHHHHHCCCCcchhccCCC
Confidence            9999999999999999   999999999999999999999999999997      8999999999999999999999999


Q ss_pred             CCcccccc
Q 006236          175 IPVPQLSK  182 (655)
Q Consensus       175 tpl~~l~~  182 (655)
                      +|+..+..
T Consensus       140 tpl~~A~~  147 (179)
T 3f6q_A          140 MPVDKAKA  147 (179)
T ss_dssp             CGGGGSCH
T ss_pred             CcHHHHHH
Confidence            99866543

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.89  E-value=3.9e-23  Score=212.31  Aligned_cols=145  Identities=21%  Similarity=0.268  Sum_probs=130.5

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA   93 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~   93 (655)
                      .+|.|+||.||..|+.+.++.||. .|++++..+             .+|.||||+|+..++.+++++|++.| +++|..
T Consensus        84 ~~G~TpLh~A~~~g~~~~v~~Ll~-~~a~~~~~~-------------~~g~t~l~~a~~~~~~~~~~~Ll~~g-~~~n~~  148 (269)
T 4b93_B           84 QDGSSPLHVAALHGRADLIPLLLK-HGANAGARN-------------ADQAVPLHLACQQGHFQVVKCLLDSN-AKPNKK  148 (269)
T ss_dssp             TTSCCHHHHHHHTTCTTHHHHHHH-TTCCTTCCC-------------TTCCCHHHHHHHHTCHHHHHHHHHTT-CCSCCC
T ss_pred             CCCCCHHHHHHHcCcHHHHHHHHh-cCCCcCccC-------------CCCCCccccccccChHHHHHHHHHCC-CCCCCC
Confidence            457788888888888777666654 788887764             88999999999999999999999999 999998


Q ss_pred             cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccC
Q 006236           94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELV  173 (655)
Q Consensus        94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g  173 (655)
                       |..|.||||+|+..|+   .++|++||++|+|+|.+|..|.||||+|+.      .++.++|++||++|+|++.+|.+|
T Consensus       149 -d~~g~TpL~~A~~~g~---~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~------~g~~~~v~~Ll~~Gad~~~~d~~G  218 (269)
T 4b93_B          149 -DLSGNTPLIYACSGGH---HELVALLLQHGASINASNNKGNTALHEAVI------EKHVFVVELLLLHGASVQVLNKRQ  218 (269)
T ss_dssp             -CTTCCCHHHHHHHTTC---GGGHHHHHHTTCCTTCBCTTSCBHHHHHHH------TTCHHHHHHHHHTTCCSCCCCTTS
T ss_pred             -CCCCCCHHHHHHHCCC---HHHHHHHHHCCCCCCccccCCCcHHHHHHH------cCCHHHHHHHHHCCCCCCCcCCCC
Confidence             9999999999999999   999999999999999999999999999997      899999999999999999999999


Q ss_pred             CCCccccccc
Q 006236          174 NIPVPQLSKD  183 (655)
Q Consensus       174 ~tpl~~l~~~  183 (655)
                      .||+..+...
T Consensus       219 ~TpL~~A~~~  228 (269)
T 4b93_B          219 RTAVDCAEQN  228 (269)
T ss_dssp             CCSGGGSCTT
T ss_pred             CCHHHHHHhC
Confidence            9999776543

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.89  E-value=5.2e-23  Score=193.39  Aligned_cols=143  Identities=23%  Similarity=0.298  Sum_probs=134.0

Q ss_pred             CCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccc
Q 006236           15 NKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRAC   94 (655)
Q Consensus        15 ~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~   94 (655)
                      .|.|+||.||..|+.+.++.+|+ .|.++|..+             ..|.||||+|+..|+.+++++|++.| ++++.. 
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~-~~~~~~~~~-------------~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~-   65 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIE-QENVINHTD-------------EEGFTPLMWAAAHGQIAVVEFLLQNG-ADPQLL-   65 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHH-HSSCTTCCC-------------TTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCC-
T ss_pred             CCcchHHHHHHCCCHHHHHHHHH-cCCCcCCCC-------------CCCCCHHHHHHHCCCHHHHHHHHHcC-CCCCCc-
Confidence            46799999999999999998887 688999884             89999999999999999999999999 999998 


Q ss_pred             CCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccCC
Q 006236           95 GSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVN  174 (655)
Q Consensus        95 d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~  174 (655)
                      +..|.||||+|+..|+   .+++++|+++|++++..|..|.||||+|+.      .++.+++++|+++|++++..+..|.
T Consensus        66 ~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~------~~~~~~v~~Ll~~g~~~~~~~~~g~  136 (167)
T 3v31_A           66 GKGRESALSLACSKGY---TDIVKMLLDCGVDVNEYDWNGGTPLLYAVH------GNHVKCVKMLLESGADPTIETDSGY  136 (167)
T ss_dssp             CTTCCCHHHHHHHHTC---HHHHHHHHHHTCCTTCCCTTSCCHHHHHHH------TTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             CCCCCcHHHHHHHcCC---HHHHHHHHHCCCCCCcCCCCCCCHHHHHHH------cCCHHHHHHHHHcCCCCCCcCCCCC
Confidence            9999999999999999   999999999999999999999999999997      8999999999999999999999999


Q ss_pred             CCcccccc
Q 006236          175 IPVPQLSK  182 (655)
Q Consensus       175 tpl~~l~~  182 (655)
                      +|+..+..
T Consensus       137 t~l~~A~~  144 (167)
T 3v31_A          137 NSMDLAVA  144 (167)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHHHH
Confidence            99865543

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.88  E-value=6.4e-23  Score=197.45  Aligned_cols=147  Identities=18%  Similarity=0.141  Sum_probs=136.4

Q ss_pred             ccccCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcc
Q 006236           11 GALYNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNV   90 (655)
Q Consensus        11 ~l~~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDv   90 (655)
                      ..+..|.|+||.|+..|+.+.++.+++ .|++++..+             ..|.||||+|+..|+.+++++|++.| +++
T Consensus        30 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~~~-------------~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~   94 (192)
T 2rfm_A           30 YRDSYNRTPLMVACMLGMENAIDKLVE-NFDKLEDKD-------------IEGSTALIWAVKNNRLGIAEKLLSKG-SNV   94 (192)
T ss_dssp             CCCTTCCCHHHHHHHHTCGGGHHHHHH-HHCCTTCCC-------------TTSCCHHHHHHHTTCHHHHHHHHHHT-CCT
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHH-hcccccccc-------------ccCccHHHHHHHcCCHHHHHHHHHCC-CCC
Confidence            344678999999999999999988887 789998874             88999999999999999999999999 999


Q ss_pred             ccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCccc
Q 006236           91 NRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEE  170 (655)
Q Consensus        91 N~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d  170 (655)
                      +.. +..|.||||+|+..|+   .+++++|+++|++++.+|..|.||||+|+.      .++.+++++|+++|++++.+|
T Consensus        95 ~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~------~~~~~~v~~Ll~~ga~~~~~~  164 (192)
T 2rfm_A           95 NTK-DFSGKTPLMWSIIFGY---SEMSYFLLEHGANVNDRNLEGETPLIVASK------YGRSEIVKKLLELGADISARD  164 (192)
T ss_dssp             TCC-CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCSSCCCTTCCCHHHHHHH------HTCHHHHHHHHHTTCCTTCBC
T ss_pred             CCC-CCCCCcHHHHHHHcCC---HHHHHHHHHCCCCCCCCCCCCCCHHHHHHH------cCCHHHHHHHHHCCCCCCCcC
Confidence            998 9999999999999999   999999999999999999999999999997      899999999999999999999


Q ss_pred             ccCCCCcccccc
Q 006236          171 ELVNIPVPQLSK  182 (655)
Q Consensus       171 ~~g~tpl~~l~~  182 (655)
                      ..|.+|+..+..
T Consensus       165 ~~g~t~l~~A~~  176 (192)
T 2rfm_A          165 LTGLTAEASARI  176 (192)
T ss_dssp             TTSCBHHHHHHH
T ss_pred             CCCCCHHHHHHH
Confidence            999999865543

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.88  E-value=1.6e-22  Score=191.20  Aligned_cols=143  Identities=24%  Similarity=0.387  Sum_probs=133.2

Q ss_pred             CCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccc
Q 006236           15 NKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRAC   94 (655)
Q Consensus        15 ~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~   94 (655)
                      .+.++|++||..|+.+.++.+|+ .|+++|..+             ..|.||||+|+..|+.+++++|++.| ++++.. 
T Consensus        13 ~~~~~l~~A~~~g~~~~v~~Ll~-~g~~~~~~~-------------~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~-   76 (169)
T 2y1l_E           13 DLGKKLLEAARAGRDDEVRILMA-NGADVNAED-------------ASGWTPLHLAAFNGHLEIVEVLLKNG-ADVNAV-   76 (169)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCCC-------------TTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCC-
T ss_pred             cccchHHHHHHcCCHHHHHHHHH-CCCCCCCCC-------------CCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCcc-
Confidence            34688999999999999988887 899999874             88999999999999999999999999 999998 


Q ss_pred             CCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccCC
Q 006236           95 GSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVN  174 (655)
Q Consensus        95 d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~  174 (655)
                      +..|.||||+|+..|+   .+++++|+++|++++..|.+|.||||+|+.      .++.+++++|+++|++++.+|..|.
T Consensus        77 ~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~------~~~~~~v~~Ll~~g~~~~~~~~~g~  147 (169)
T 2y1l_E           77 DHAGMTPLRLAALFGH---LEIVEVLLKNGADVNANDMEGHTPLHLAAM------FGHLEIVEVLLKNGADVNAQDKFGK  147 (169)
T ss_dssp             CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHH------TTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCCCCCCCCHHHHHHH------cCCHHHHHHHHHcCCCCCCcCCCCC
Confidence            9999999999999999   999999999999999999999999999997      8999999999999999999999999


Q ss_pred             CCcccccc
Q 006236          175 IPVPQLSK  182 (655)
Q Consensus       175 tpl~~l~~  182 (655)
                      +++..+..
T Consensus       148 t~l~~A~~  155 (169)
T 2y1l_E          148 TAFDISID  155 (169)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHHHH
Confidence            99865543

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.88  E-value=2.6e-22  Score=202.45  Aligned_cols=158  Identities=19%  Similarity=0.197  Sum_probs=126.8

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCC------cccccc----------------------------------
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPS------FWYGRR----------------------------------   53 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~d------lw~g~~----------------------------------   53 (655)
                      ..|.|+||.|+..|+.+.++.||+ +|++++..+      +.+...                                  
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~  121 (282)
T 1oy3_D           43 DLGQTALHLAAILGEASTVEKLYA-AGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP  121 (282)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHH-TTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-------------
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCc
Confidence            568899999999999988887776 899998776      111110                                  


Q ss_pred             ---------------------------cCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCChHHHHHH
Q 006236           54 ---------------------------IGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAV  106 (655)
Q Consensus        54 ---------------------------~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa  106 (655)
                                                 ...+..+..|.||||+|+..|+.+++++|+++| ++++...+..|.||||+|+
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~~g~tpL~~A~  200 (282)
T 1oy3_D          122 DTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAG-ADLNKPEPTCGRTPLHLAV  200 (282)
T ss_dssp             ----------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHT-CCTTCCCTTTCCCHHHHHH
T ss_pred             chhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCcCHHHHHH
Confidence                                       123455788999999999999999999999999 9999883355999999999


Q ss_pred             HcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccCCCCcccccc
Q 006236          107 AGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLSK  182 (655)
Q Consensus       107 ~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~tpl~~l~~  182 (655)
                      ..|+   .++|++||++|++++.+|..|.||||+|+.      .++.+++++|+++|++++.++.+|.+|+.....
T Consensus       201 ~~~~---~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~------~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~  267 (282)
T 1oy3_D          201 EAQA---ASVLELLLKAGADPTARMYGGRTPLGSALL------RPNPILARLLRAHGAPEPEDGGDKLSPCSSSGS  267 (282)
T ss_dssp             HTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHT------SSCHHHHHHHHHTTCCCCCCC------------
T ss_pred             HcCC---HHHHHHHHHcCCCCcccccCCCCHHHHHHH------cCCcHHHHHHHHcCCCcCcCCCcccccccccCC
Confidence            9999   999999999999999999999999999987      899999999999999999999999999865543

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.88  E-value=1.4e-22  Score=188.37  Aligned_cols=140  Identities=20%  Similarity=0.310  Sum_probs=130.0

Q ss_pred             chHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccCC
Q 006236           17 SSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGS   96 (655)
Q Consensus        17 ~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~   96 (655)
                      .++|+.|+..|+.+.++.+++ .|.+++.              +..|.||||+|+..|+.+++++|++.| ++++.. +.
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~-~g~~~~~--------------~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~-~~   65 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMA-NGAPFTT--------------DWLGTSPLHLAAQYGHFSTTEVLLRAG-VSRDAR-TK   65 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHH-HTCCCCC--------------CTTCCCHHHHHHHHTCHHHHHHHHTTT-CCTTCC-CT
T ss_pred             cHHHHHHHHcCCHHHHHHHHH-cCCCCCc--------------CCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCC-CC
Confidence            578999999999999998887 7887763              478999999999999999999999999 999998 99


Q ss_pred             CCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccCCCC
Q 006236           97 DGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIP  176 (655)
Q Consensus        97 ~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~tp  176 (655)
                      .|.||||+|+..|+   .+++++|+++|++++.+|..|.||||+|+.      .++.+++++|+++|++++..|..|.+|
T Consensus        66 ~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~------~~~~~~v~~Ll~~ga~~~~~~~~g~t~  136 (153)
T 1awc_B           66 VDRTPLHMAASEGH---ANIVEVLLKHGADVNAKDMLKMTALHWATE------HNHQEVVELLIKYGADVHTQSKFCKTA  136 (153)
T ss_dssp             TCCCHHHHHHHHTC---HHHHHHHHTTTCCTTCCCTTSCCHHHHHHH------TTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             CCCCHHHHHHHcCh---HHHHHHHHHcCCCCCCCCCCCCCHHHHHHH------cCCHHHHHHHHHcCCCccccCCCCCCH
Confidence            99999999999999   999999999999999999999999999997      899999999999999999999999999


Q ss_pred             cccccc
Q 006236          177 VPQLSK  182 (655)
Q Consensus       177 l~~l~~  182 (655)
                      +..+..
T Consensus       137 l~~A~~  142 (153)
T 1awc_B          137 FDISID  142 (153)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            865543

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.88  E-value=1e-22  Score=192.24  Aligned_cols=143  Identities=22%  Similarity=0.344  Sum_probs=130.5

Q ss_pred             CchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccC
Q 006236           16 KSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACG   95 (655)
Q Consensus        16 g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d   95 (655)
                      +.++|+.||..|+.+.++.+|...+..++..             |..|+||||+|+..|+.+++++|++.| ++++.. +
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~-~   66 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKP-------------DERGFTPLIWASAFGEIETVRFLLEWG-ADPHIL-A   66 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHHT-CCTTCC-C
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCC-------------CCCCCCHHHHHHHcCCHHHHHHHHHcC-CCchhh-c
Confidence            3578999999999999999998544447776             488999999999999999999999999 999998 9


Q ss_pred             CCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccCCC
Q 006236           96 SDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNI  175 (655)
Q Consensus        96 ~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~t  175 (655)
                      ..|.||||+|+..|+   .+++++|+++|++++.+|..|.||||+|+.      .++.+++++|+++|++++.+|..|.+
T Consensus        67 ~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~------~~~~~~v~~Ll~~ga~~~~~~~~g~t  137 (172)
T 3v30_A           67 KERESALSLASTGGY---TDIVGLLLERDVDINIYDWNGGTPLLYAVR------GNHVKCVEALLARGADLTTEADSGYT  137 (172)
T ss_dssp             TTCCCHHHHHHHTTC---HHHHHHHHTTTCCTTCCCTTSCCHHHHHHH------TTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             ccCCCHHHHHHHCCC---HHHHHHHHHcCCCCCCCCCCCCCHHHHHHH------cCCHHHHHHHHHcCCCccccCCCCCC
Confidence            999999999999999   999999999999999999999999999997      89999999999999999999999999


Q ss_pred             Ccccccc
Q 006236          176 PVPQLSK  182 (655)
Q Consensus       176 pl~~l~~  182 (655)
                      |+..+..
T Consensus       138 ~l~~A~~  144 (172)
T 3v30_A          138 PMDLAVA  144 (172)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9865543

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.88  E-value=4.2e-23  Score=193.03  Aligned_cols=138  Identities=20%  Similarity=0.261  Sum_probs=117.3

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA   93 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~   93 (655)
                      ..+.|+||.|+..|+.+.++.+|. .|+++|..+             ..|+||||+|+ .|+.+++++|++.| +++|..
T Consensus        10 ~~~~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~-------------~~g~t~L~~A~-~~~~~~v~~Ll~~g-~~~~~~   73 (156)
T 1bi7_B           10 EPSADWLATAAARGRVEEVRALLE-AGANPNAPN-------------SYGRRPIQVMM-MGSARVAELLLLHG-AEPNCA   73 (156)
T ss_dssp             CCSTTHHHHHHHHTCHHHHHHHHT-TTCCTTCCC-------------SSSCCTTTSSC-TTCHHHHHHHHTTT-CCCCCC
T ss_pred             ccchHHHHHHHHcCCHHHHHHHHH-cCCCCCCCC-------------CCCCCHHHHHH-cCCHHHHHHHHHcC-CCCCCc
Confidence            567899999999999999988886 799999885             89999999986 99999999999999 999998


Q ss_pred             cCCCCCh-HHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCccccc
Q 006236           94 CGSDGFT-ALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEEL  172 (655)
Q Consensus        94 ~d~~G~T-pLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~  172 (655)
                       +..|.| |||+|+..|+   .+++++|+++|++++.+|..|.||||+|+.      .++.+++++|+++|++++..+..
T Consensus        74 -d~~g~ttpL~~A~~~~~---~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~------~~~~~~v~~Ll~~ga~~~~~~~~  143 (156)
T 1bi7_B           74 -DPATLTRPVHDAAREGF---LDTLVVLHRAGARLDVRDAWGRLPVDLAEE------LGHRDVARYLRAAAGGTRGSNHA  143 (156)
T ss_dssp             -CTTTCCCHHHHHHHHTC---HHHHHHHHHHTCCSSCCCTTCCCHHHHHHH------HTCHHHHHHHSSCC---------
T ss_pred             -CCCCCcHHHHHHHHCCC---HHHHHHHHHcCCCCcccCCCCCCHHHHHHH------hCHHHHHHHHHHcCCCCCccCcC
Confidence             999999 9999999999   999999999999999999999999999997      89999999999999999999988


Q ss_pred             CCCCc
Q 006236          173 VNIPV  177 (655)
Q Consensus       173 g~tpl  177 (655)
                      |.++.
T Consensus       144 g~t~~  148 (156)
T 1bi7_B          144 RIDAA  148 (156)
T ss_dssp             -----
T ss_pred             cCccc
Confidence            88774

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.87  E-value=3.3e-22  Score=197.17  Aligned_cols=146  Identities=23%  Similarity=0.319  Sum_probs=133.8

Q ss_pred             CCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcc----
Q 006236           15 NKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNV----   90 (655)
Q Consensus        15 ~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDv----   90 (655)
                      .|.|+||.|+..|+.+.++.+|...|+++|..+             ..|+||||+|+..|+.+++++|++.| +++    
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~-------------~~g~t~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~   67 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRG-------------AMGETALHIAALYDNLEAAMVLMEAA-PELVFEP   67 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCC-------------TTSCCHHHHHHHTTCHHHHHHHHHHC-GGGGGCC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCC-------------CCCCCHHHHHHHcCCHHHHHHHHHcC-chhcccc
Confidence            478999999999999999999986699999985             89999999999999999999999999 887    


Q ss_pred             -ccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCC-------------CCCCccchhhhccCCCCcChHHHH
Q 006236           91 -NRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDV-------------YGNKPVDLIPVAMKSPLHSRKRAI  156 (655)
Q Consensus        91 -N~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~-------------~G~TPLhlAa~~~~~~~~g~~eiv  156 (655)
                       +.. +..|.||||+|+..|+   .+++++|+++|++++..+.             .|.||||+|+.      .++.+++
T Consensus        68 ~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~------~~~~~~v  137 (232)
T 2rfa_A           68 MTSE-LYEGQTALHIAVINQN---VNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAAC------VGSEEIV  137 (232)
T ss_dssp             CCST-TTTTCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHH------HTCHHHH
T ss_pred             cccc-CCCCcCHHHHHHHcCC---HHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHH------cCCHHHH
Confidence             445 7799999999999999   9999999999999998876             79999999997      8999999


Q ss_pred             HHHHhCCCCCCcccccCCCCcccccccC
Q 006236          157 ELLLKGDHTIFEEEELVNIPVPQLSKDG  184 (655)
Q Consensus       157 elLL~~GAdin~~d~~g~tpl~~l~~~~  184 (655)
                      ++|+++|++++..|.+|.+|+..+...+
T Consensus       138 ~~Ll~~ga~~~~~d~~g~t~L~~A~~~~  165 (232)
T 2rfa_A          138 RLLIEHGADIRAQDSLGNTVLHILILQP  165 (232)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHHHTCS
T ss_pred             HHHHHCCCCCCCCCCCCCCHHHHHHHcC
Confidence            9999999999999999999997665443

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.87  E-value=1.3e-22  Score=185.30  Aligned_cols=126  Identities=22%  Similarity=0.296  Sum_probs=119.0

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA   93 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~   93 (655)
                      ..+.|+||.|+..|+.+.++.+|+ .|+++|..+             ..|+||||+|+. |+.+++++|+++| +++|..
T Consensus        10 ~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~-------------~~g~t~L~~A~~-~~~~~v~~Ll~~g-~~~~~~   73 (136)
T 1d9s_A           10 GSSDAGLATAAARGQVETVRQLLE-AGADPNALN-------------RFGRRPIQVMMM-GSAQVAELLLLHG-AEPNCA   73 (136)
T ss_dssp             CCCSCHHHHHHHTTCHHHHHHHHH-TTCCTTCCC-------------TTCCTTTTTSTT-SCHHHHHHHHHHT-CCSSCC
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHH-cCCCcCCcC-------------CCCCCHHHHHHc-CCHHHHHHHHHCC-CCCCCc
Confidence            468899999999999999888886 799999884             899999999999 9999999999999 999998


Q ss_pred             cCCC-CChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCC
Q 006236           94 CGSD-GFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHT  165 (655)
Q Consensus        94 ~d~~-G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAd  165 (655)
                       +.. |.||||+|+..|+   .+++++|+++|++++.+|..|.||||+|+.      .++.+++++|+++|+|
T Consensus        74 -~~~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~------~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           74 -DPATLTRPVHDAAREGF---LDTLVVLHRAGARLDVCDAWGRLPVDLAEE------QGHRDIARYLHAATGD  136 (136)
T ss_dssp             -BTTTTBCHHHHHHHHTC---HHHHHHHHHTCCCCCCCSSSSSCHHHHHHH------HTCHHHHHHHHHHHCC
T ss_pred             -CCCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCccCCCCCCHHHHHHH------cCCHHHHHHHHHcCCC
Confidence             888 9999999999999   999999999999999999999999999997      8999999999999986

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.87  E-value=9.9e-22  Score=179.52  Aligned_cols=125  Identities=26%  Similarity=0.396  Sum_probs=117.0

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA   93 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~   93 (655)
                      ..+.++|++||..|+.+.++.+|. .|+++|..+             ..|.||||+|+..|+.+++++|++.| +++|..
T Consensus        12 ~~~~t~l~~A~~~g~~~~v~~Ll~-~g~~~~~~~-------------~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~   76 (136)
T 2jab_A           12 SDLGKKLLEAARAGQDDEVRILMA-NGADVNAKD-------------EYGLTPLYLATAHGHLEIVEVLLKNG-ADVNAV   76 (136)
T ss_dssp             CHHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCCC-------------TTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCC
T ss_pred             ccccHHHHHHHHhCCHHHHHHHHH-cCCCCCCcC-------------CCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCcC
Confidence            346799999999999999988887 799999884             88999999999999999999999999 999998


Q ss_pred             cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCC
Q 006236           94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGD  163 (655)
Q Consensus        94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~G  163 (655)
                       +..|.||||+|+..|+   .+++++|+++|++++.+|.+|.||||+|+.      .++.+++++|+++|
T Consensus        77 -d~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~------~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           77 -DAIGFTPLHLAAFIGH---LEIAEVLLKHGADVNAQDKFGKTAFDISIG------NGNEDLAEILQKLN  136 (136)
T ss_dssp             -CTTCCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHH------TTCHHHHHHHHHC-
T ss_pred             -CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCcCcCCCCCCHHHHHHH------CCCHHHHHHHHHcC
Confidence             8999999999999999   999999999999999999999999999997      89999999999886

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.87  E-value=4.9e-22  Score=184.33  Aligned_cols=141  Identities=21%  Similarity=0.294  Sum_probs=131.3

Q ss_pred             CchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccC
Q 006236           16 KSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACG   95 (655)
Q Consensus        16 g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d   95 (655)
                      +.++|+.|+..|+.+.++.+|...+.++|..+             ..|.||||+ |..|+.+++++|++.| ++++.. +
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~-------------~~g~t~L~~-~~~~~~~~v~~Ll~~g-~~~~~~-~   65 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALN-------------RFGKTALQV-MMFGSTAIALELLKQG-ASPNVQ-D   65 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCC-------------TTSCCHHHH-SCTTCHHHHHHHHHTT-CCTTCC-C
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccC-------------CCCCcHHHH-HHcCCHHHHHHHHHCC-CCCCCc-C
Confidence            45899999999999999999987566888874             889999999 9999999999999999 999998 9


Q ss_pred             CCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccCCC
Q 006236           96 SDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNI  175 (655)
Q Consensus        96 ~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~t  175 (655)
                      ..|.||||+|+..|+   .+++++|+++|++++.+|..|.||||+|+.      .++.+++++|+++ ++++..|.+|.+
T Consensus        66 ~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~------~~~~~~v~~Ll~~-~~~~~~~~~g~t  135 (156)
T 1bd8_A           66 TSGTSPVHDAARTGF---LDTLKVLVEHGADVNVPDGTGALPIHLAVQ------EGHTAVVSFLAAE-SDLHRRDARGLT  135 (156)
T ss_dssp             TTSCCHHHHHHHTTC---HHHHHHHHHTTCCSCCCCTTSCCHHHHHHH------HTCHHHHHHHHTT-SCTTCCCTTSCC
T ss_pred             CCCCCHHHHHHHcCc---HHHHHHHHHcCCCCCCcCCCCCcHHHHHHH------hChHHHHHHHHhc-cCCCCcCCCCCC
Confidence            999999999999999   999999999999999999999999999997      8999999999999 999999999999


Q ss_pred             Ccccccc
Q 006236          176 PVPQLSK  182 (655)
Q Consensus       176 pl~~l~~  182 (655)
                      |+..+..
T Consensus       136 ~l~~A~~  142 (156)
T 1bd8_A          136 PLELALQ  142 (156)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9865543

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.87  E-value=1.5e-21  Score=173.06  Aligned_cols=126  Identities=35%  Similarity=0.489  Sum_probs=119.3

Q ss_pred             CCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccc
Q 006236           15 NKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRAC   94 (655)
Q Consensus        15 ~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~   94 (655)
                      +|.|+|+.|+..|+.+.++.++. .|++++..+             ..|.||||+|+..|+.+++++|++.| ++++.. 
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~-~~~~~~~~~-------------~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~-   64 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLE-AGADVNAKD-------------KNGRTPLHLAARNGHLEVVKLLLEAG-ADVNAK-   64 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHH-HTCCTTCCC-------------TTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCC-
T ss_pred             CCccHHHHHHHcCcHHHHHHHHH-cCCCCCCcC-------------CCCCcHHHHHHHcCcHHHHHHHHHcC-CCCccc-
Confidence            47899999999999999988886 799998874             88999999999999999999999999 999998 


Q ss_pred             CCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCC
Q 006236           95 GSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHT  165 (655)
Q Consensus        95 d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAd  165 (655)
                      +..|.||||+|+..|+   .+++++|+++|++++.+|..|.||||+|+.      .++.+++++|+++|+|
T Consensus        65 ~~~g~t~l~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~------~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           65 DKNGRTPLHLAARNGH---LEVVKLLLEAGADVNAKDKNGRTPLHLAAR------NGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHH------TTCHHHHHHHHHHTCC
T ss_pred             CCCCCcHHHHHHHcCh---HHHHHHHHHcCCCCcccCCCCCCHHHHHHH------cCcHHHHHHHHHcCCC
Confidence            8999999999999999   999999999999999999999999999997      8999999999999986

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.87  E-value=3.4e-22  Score=186.22  Aligned_cols=141  Identities=21%  Similarity=0.299  Sum_probs=130.8

Q ss_pred             CchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccC
Q 006236           16 KSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACG   95 (655)
Q Consensus        16 g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d   95 (655)
                      ..++|+.|+..|+.+.++.+|+ .|+++|..+             ..|+||||+|+. |+.+++++|++.| ++++.. +
T Consensus         5 ~~~~L~~A~~~g~~~~v~~Ll~-~~~~~~~~~-------------~~g~t~L~~A~~-~~~~~v~~Ll~~g-~~~~~~-~   67 (162)
T 1ihb_A            5 WGNELASAAARGDLEQLTSLLQ-NNVNVNAQN-------------GFGRTALQVMKL-GNPEIARRLLLRG-ANPDLK-D   67 (162)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHTT-SCCCTTCCC-------------TTSCCHHHHCCS-SCHHHHHHHHHTT-CCTTCC-C
T ss_pred             HhhHHHHHHHcCCHHHHHHHHh-CCCCccccC-------------ccCccHHHHHHc-CcHHHHHHHHHcC-CCCCCC-C
Confidence            4689999999999999998886 899999874             889999999999 9999999999999 999998 9


Q ss_pred             CCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCC-CCcccccCC
Q 006236           96 SDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHT-IFEEEELVN  174 (655)
Q Consensus        96 ~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAd-in~~d~~g~  174 (655)
                      ..|.||||+|+..|+   .+++++|+++|++++.+|.+|.||||+|+.      .++.+++++|+++|++ ++..+..|.
T Consensus        68 ~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~------~~~~~~v~~Ll~~g~~~~~~~~~~g~  138 (162)
T 1ihb_A           68 RTGFAVIHDAARAGF---LDTLQTLLEFQADVNIEDNEGNLPLHLAAK------EGHLRVVEFLVKHTASNVGHRNHKGD  138 (162)
T ss_dssp             TTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHH------TTCHHHHHHHHHHSCCCTTCCCTTSC
T ss_pred             CCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCCHHHHHHH------cCCHHHHHHHHHccCCCCCCcCCCCC
Confidence            999999999999999   999999999999999999999999999997      8999999999999998 688999999


Q ss_pred             CCcccccc
Q 006236          175 IPVPQLSK  182 (655)
Q Consensus       175 tpl~~l~~  182 (655)
                      +|+..+..
T Consensus       139 t~l~~A~~  146 (162)
T 1ihb_A          139 TACDLARL  146 (162)
T ss_dssp             CHHHHHHH
T ss_pred             cHHHHHHH
Confidence            99865543

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.86  E-value=2.1e-21  Score=190.30  Aligned_cols=155  Identities=17%  Similarity=0.076  Sum_probs=108.3

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcC--CCCCC-CC--------------------cc--cccccCCccCCCCCChHHH
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKG--FDVDE-PS--------------------FW--YGRRIGSKKMGFEERTPIM   68 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~G--adIn~-~d--------------------lw--~g~~~~~~~~d~~G~TPLh   68 (655)
                      ..|.|+||.|+..|+.+.++.++. .|  .+++. .+                    ++  .+...+.+..+..|.||||
T Consensus        34 ~~g~t~L~~A~~~~~~~~v~~Ll~-~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~  112 (228)
T 2dzn_A           34 QDGRIPLHWSVSFQAHEITSFLLS-KMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLH  112 (228)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHH-TCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHh-ccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHH
Confidence            456677777777777666665554 55  44333 21                    00  1111333344577778888


Q ss_pred             HHHHcCCHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCC-CCCcccCCCCCCccchhhhccCC
Q 006236           69 IAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS-ADVNCVDVYGNKPVDLIPVAMKS  147 (655)
Q Consensus        69 ~AA~~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~G-ADvn~~D~~G~TPLhlAa~~~~~  147 (655)
                      +|+..|+.+++++|++.| ++++.. +..|.||||+|+..|+   .+++++|++.| ++++.+|..|+||||+|+.    
T Consensus       113 ~A~~~~~~~~~~~Ll~~g-~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~----  183 (228)
T 2dzn_A          113 LAVGKKWFEVSQFLIENG-ASVRIK-DKFNQIPLHRAASVGS---LKLIELLCGLGKSAVNWQDKQGWTPLFHALA----  183 (228)
T ss_dssp             HHHHTTCHHHHHHHHHTT-CCSCCC-CTTSCCHHHHHHHTTC---HHHHHHHHTTTCCCSCCCCTTSCCHHHHHHH----
T ss_pred             HHHHcCCHhHHHHHHHcC-CCcccc-CCCCCCHHHHHHHcCC---HHHHHHHHhcCcccccCcCCCCCCHHHHHHH----
Confidence            888888888888888777 777777 7778888888888777   78888888777 7777778888888888776    


Q ss_pred             CCcChHHHHHHHH-hCCCCCCcccccCCCCcccc
Q 006236          148 PLHSRKRAIELLL-KGDHTIFEEEELVNIPVPQL  180 (655)
Q Consensus       148 ~~~g~~eivelLL-~~GAdin~~d~~g~tpl~~l  180 (655)
                        .++.+++++|+ ++|++++.+|.+|.+|+..+
T Consensus       184 --~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A  215 (228)
T 2dzn_A          184 --EGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVA  215 (228)
T ss_dssp             --TTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGC
T ss_pred             --cCCHHHHHHHHHhcCCCCCccCCCCCcHHHHH
Confidence              67778888877 77888887777777777554

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.86  E-value=2.8e-21  Score=197.43  Aligned_cols=75  Identities=29%  Similarity=0.312  Sum_probs=46.9

Q ss_pred             CCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccCCCC
Q 006236           97 DGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIP  176 (655)
Q Consensus        97 ~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~tp  176 (655)
                      .|.||||+|+..|+   .++|++|+++|+++|.+|..|.||||+|+.      .++.+++++|+++|++++.+|..|.+|
T Consensus       198 ~g~t~L~~A~~~g~---~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~------~~~~~~v~~Ll~~gad~~~~d~~g~t~  268 (299)
T 1s70_B          198 SGGTALHVAAAKGY---TEVLKLLIQARYDVNIKDYDGWTPLHAAAH------WGKEEACRILVENLCDMEAVNKVGQTA  268 (299)
T ss_dssp             TCCCHHHHHHHHTC---HHHHHHHHTTTCCTTCCCTTCCCHHHHHHH------TTCHHHHHHHHHTTCCTTCCCTTSCCT
T ss_pred             CCCCHHHHHHHCCc---HHHHHHHHHcCCCCCCcCCCCCcHHHHHHh------cCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence            34555666666666   666666666666666666666666666665      566666666666666666666666666


Q ss_pred             cccc
Q 006236          177 VPQL  180 (655)
Q Consensus       177 l~~l  180 (655)
                      +..+
T Consensus       269 l~~A  272 (299)
T 1s70_B          269 FDVA  272 (299)
T ss_dssp             TTSC
T ss_pred             HHHH
Confidence            5444

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.86  E-value=7.9e-22  Score=186.20  Aligned_cols=138  Identities=22%  Similarity=0.241  Sum_probs=123.8

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA   93 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~   93 (655)
                      ..|.|+||.|+..|+.+.++.+|+ .|+++|..+             ..|.||||+|+..|+.+++++|++.| ++++..
T Consensus        34 ~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~-------------~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~   98 (172)
T 3v30_A           34 ERGFTPLIWASAFGEIETVRFLLE-WGADPHILA-------------KERESALSLASTGGYTDIVGLLLERD-VDINIY   98 (172)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHH-HTCCTTCCC-------------TTCCCHHHHHHHTTCHHHHHHHHTTT-CCTTCC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHH-cCCCchhhc-------------ccCCCHHHHHHHCCCHHHHHHHHHcC-CCCCCC
Confidence            568899999999999998888775 899999885             88999999999999999999999999 999998


Q ss_pred             cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccC
Q 006236           94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELV  173 (655)
Q Consensus        94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g  173 (655)
                       +..|.||||+|+..|+   .+++++|+++|++++.+|..|.||||+|+.      .++.+++++|+++|+++...+..+
T Consensus        99 -~~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~------~~~~~~~~~L~~~~~~~~~~~~~~  168 (172)
T 3v30_A           99 -DWNGGTPLLYAVRGNH---VKCVEALLARGADLTTEADSGYTPMDLAVA------LGYRKVQQVIENHILKLFQSNLVP  168 (172)
T ss_dssp             -CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHH------HTCHHHHHHHHHHHHHHSCC----
T ss_pred             -CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCccccCCCCCCHHHHHHH------hCcHHHHHHHHHHHHHHhcccCCC
Confidence             9999999999999999   999999999999999999999999999997      899999999999999988776665


Q ss_pred             CCC
Q 006236          174 NIP  176 (655)
Q Consensus       174 ~tp  176 (655)
                      .+|
T Consensus       169 ~~p  171 (172)
T 3v30_A          169 ADP  171 (172)
T ss_dssp             ---
T ss_pred             CCC
Confidence            554

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.86  E-value=4e-21  Score=183.09  Aligned_cols=132  Identities=20%  Similarity=0.194  Sum_probs=123.5

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA   93 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~   93 (655)
                      ..|.|+||.|+..|+.+.++.+|. .|+++|..+             ..|.||||+|+..|+.+++++|+++| +++|..
T Consensus        37 ~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~-------------~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~  101 (179)
T 3f6q_A           37 DHGFSPLHWACREGRSAVVEMLIM-RGARINVMN-------------RGDDTPLHLAASHGHRDIVQKLLQYK-ADINAV  101 (179)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCC-------------TTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCC
T ss_pred             CCCCCHHHHHHHcCcHHHHHHHHH-cCCCCCCcC-------------CCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCcc
Confidence            468899999999999988877776 899999884             88999999999999999999999999 999998


Q ss_pred             cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCccc
Q 006236           94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEE  170 (655)
Q Consensus        94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d  170 (655)
                       +..|.||||+|+..|+   .+++++|+++|++++.+|..|.||||+|+.      .++.+++++|+++|++++..+
T Consensus       102 -d~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~------~~~~~~~~~L~~~g~~~~~~~  168 (179)
T 3f6q_A          102 -NEHGNVPLHYACFWGQ---DQVAEDLVANGALVSICNKYGEMPVDKAKA------PLRELLRERAEKMGQNLNRIP  168 (179)
T ss_dssp             -CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCSSBCCTTSCCGGGGSCH------HHHHHHHHHHHHTTCCCSCBC
T ss_pred             -CCCCCCHHHHHHHcCC---HHHHHHHHHCCCCcchhccCCCCcHHHHHH------HHHHHHHHHHHHhhcCcccCC
Confidence             9999999999999999   999999999999999999999999999987      899999999999999999644

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.86  E-value=2.4e-21  Score=190.53  Aligned_cols=145  Identities=19%  Similarity=0.250  Sum_probs=105.3

Q ss_pred             ccCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccc
Q 006236           13 LYNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNR   92 (655)
Q Consensus        13 ~~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~   92 (655)
                      +..|.|+|+.|+..|+.+.++.+++ .|++++..+             ..|.||||+|+..|+.+++++|+++| ++++.
T Consensus        37 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~-------------~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~  101 (231)
T 3aji_A           37 DQDSRTALHWACSAGHTEIVEFLLQ-LGVPVNDKD-------------DAGWSPLHIAASAGXDEIVKALLVKG-AHVNA  101 (231)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHH-TTCCSCCCC-------------TTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTC
T ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHH-hCCCCCCcC-------------CCCCCHHHHHHHcCHHHHHHHHHHcC-CCCCC
Confidence            3568899999999999888877776 788888874             66777777777777777777777776 77776


Q ss_pred             ccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCccccc
Q 006236           93 ACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEEL  172 (655)
Q Consensus        93 ~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~  172 (655)
                      . +..|.||||+|+..|+   .+++++|++.|++++..|..|.||||+|+.      .++.+++++|+++|++++..|..
T Consensus       102 ~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~------~~~~~~v~~Ll~~g~~~~~~~~~  171 (231)
T 3aji_A          102 V-NQNGCTPLHYAASKNR---HEIAVMLLEGGANPDAKDHYDATAMHRAAA------KGNLKMVHILLFYKASTNIQDTE  171 (231)
T ss_dssp             C-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHH------HTCHHHHHHHHHTTCCSCCCCTT
T ss_pred             C-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCcHHHHHHH------cCCHHHHHHHHhcCCCccccCCC
Confidence            6 6677777777777776   777777777777777777777777777765      66677777777777777776667


Q ss_pred             CCCCcccccc
Q 006236          173 VNIPVPQLSK  182 (655)
Q Consensus       173 g~tpl~~l~~  182 (655)
                      |.+|+..+..
T Consensus       172 g~t~L~~A~~  181 (231)
T 3aji_A          172 GNTPLHLACD  181 (231)
T ss_dssp             SCCHHHHHHH
T ss_pred             CCCHHHHHHH
Confidence            7776644433

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.86  E-value=1.8e-21  Score=187.37  Aligned_cols=143  Identities=22%  Similarity=0.293  Sum_probs=84.5

Q ss_pred             CCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccc
Q 006236           15 NKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRAC   94 (655)
Q Consensus        15 ~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~   94 (655)
                      .+.++|++||..|+.+.++.+|.+.+.++|..+             .+|.||||+|+..|+.+++++|++.| ++++.. 
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~-------------~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~-   68 (201)
T 3hra_A            4 YEVGALLEAANQRDTKKVKEILQDTTYQVDEVD-------------TEGNTPLNIAVHNNDIEIAKALIDRG-ADINLQ-   68 (201)
T ss_dssp             CCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCC-------------TTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCC-
T ss_pred             ccccHHHHHHHhccHHHHHHHHHcCCCCCCCCC-------------CCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCC-
Confidence            345666666666666666666665555666553             55566666666666666666666665 666655 


Q ss_pred             CCCCChHHHHHHHcCCCChHHHHHHHH-hCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCC-CCCCccccc
Q 006236           95 GSDGFTALHCAVAGGANSSFEVVKLLL-SASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGD-HTIFEEEEL  172 (655)
Q Consensus        95 d~~G~TpLH~Aa~~G~~~~~eiVklLL-~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~G-Adin~~d~~  172 (655)
                      +..|.||||+|+..|+   .+++++|+ ..+++++..|..|.||||+|+.      .++.+++++|+++| ++++..|..
T Consensus        69 ~~~g~t~l~~A~~~~~---~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~------~~~~~~v~~Ll~~g~~~~~~~~~~  139 (201)
T 3hra_A           69 NSISDSPYLYAGAQGR---TEILAYMLKHATPDLNKHNRYGGNALIPAAE------KGHIDNVKLLLEDGREDIDFQNDF  139 (201)
T ss_dssp             CTTSCCHHHHHHHTTC---HHHHHHHHHHSCCCTTCCCTTSCCSHHHHHH------TTCHHHHHHHHHHCCCCTTCCCTT
T ss_pred             CCCCCCHHHHHHHcCC---HHHHHHHHhccCcccccccCCCCcHHHHHHH------cCCHHHHHHHHHcCCCCcCCCCCC
Confidence            5556666666666665   66666666 3445566666666666666554      55566666666555 556655556


Q ss_pred             CCCCccccc
Q 006236          173 VNIPVPQLS  181 (655)
Q Consensus       173 g~tpl~~l~  181 (655)
                      |.+|+..+.
T Consensus       140 g~t~L~~A~  148 (201)
T 3hra_A          140 GYTALIEAV  148 (201)
T ss_dssp             SCCHHHHHH
T ss_pred             CCCHHHHHH
Confidence            666554333

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.86  E-value=1.9e-21  Score=192.88  Aligned_cols=145  Identities=21%  Similarity=0.222  Sum_probs=130.9

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCc----
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVN----   89 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aD----   89 (655)
                      ..|.|+||.|+..|+.+.++.||. .|++++..+             ..|.||||+|+..|+.+++++|++.+ ++    
T Consensus        43 ~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~-------------~~g~t~L~~A~~~~~~~~v~~Ll~~~-~~~~~~  107 (236)
T 1ikn_D           43 NLQQTPLHLAVITNQPEIAEALLG-AGCDPELRD-------------FRGNTPLHLACEQGCLASVGVLTQSC-TTPHLH  107 (236)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHCCCS-CCCCSCCCC-------------TTCCCHHHHHHHHTCHHHHHHHHHST-TTTSSS
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcC-------------CCCCCHHHHHHHcCCHHHHHHHHhcc-cchhHH
Confidence            458899999999999888777765 899999884             88999999999999999999999998 65    


Q ss_pred             --cccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCC-CCCCccchhhhccCCCCcChHHHHHHHHhCCCCC
Q 006236           90 --VNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDV-YGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTI  166 (655)
Q Consensus        90 --vN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~-~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdi  166 (655)
                        ++.. +..|.||||+|+..|+   .+++++|+++|++++.+|. .|.||||+|+.      .++.+++++|+++|+++
T Consensus       108 ~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~------~~~~~~v~~Ll~~ga~~  177 (236)
T 1ikn_D          108 SILKAT-NYNGHTCLHLASIHGY---LGIVELLVSLGADVNAQEPCNGRTALHLAVD------LQNPDLVSLLLKCGADV  177 (236)
T ss_dssp             CGGGCC-CTTCCCHHHHHHHTTC---HHHHHHHHHHTCCTTCCCTTTCCCHHHHHHH------TTCHHHHHHHHTTTCCS
T ss_pred             HHhhcc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCCCCCCCCCHHHHHHH------cCCHHHHHHHHHcCCCC
Confidence              5665 8899999999999999   9999999999999999998 99999999997      89999999999999999


Q ss_pred             CcccccCCCCccccccc
Q 006236          167 FEEEELVNIPVPQLSKD  183 (655)
Q Consensus       167 n~~d~~g~tpl~~l~~~  183 (655)
                      +..|..|.+|+..+...
T Consensus       178 ~~~~~~g~tpl~~A~~~  194 (236)
T 1ikn_D          178 NRVTYQGYSPYQLTWGR  194 (236)
T ss_dssp             CCCCTTCCCGGGGCTTS
T ss_pred             CcccCCCCCHHHHHHcc
Confidence            99999999998666443

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.86  E-value=1.2e-21  Score=196.37  Aligned_cols=144  Identities=17%  Similarity=0.212  Sum_probs=130.7

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA   93 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~   93 (655)
                      ..+.++|+.|+..|+.+.++.+|. .|+++|..+             ..|+||||+|+..|+.+++++||+.| +|+|..
T Consensus        19 ~~~~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~d-------------~~g~tpLh~A~~~g~~~~v~~Ll~~g-a~~n~~   83 (229)
T 2vge_A           19 LNPLVLLLDAALTGELEVVQQAVK-EMNDPSQPN-------------EEGITALHNAICGANYSIVDFLITAG-ANVNSP   83 (229)
T ss_dssp             SCHHHHHHHHHHHTCHHHHHHHHH-HSSCTTCCC-------------TTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCC
T ss_pred             cchhHHHHHHHHcCCHHHHHHHHh-cCCCCCCCC-------------CCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCC
Confidence            456789999999999999998886 899999884             89999999999999999999999999 999998


Q ss_pred             cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccC-CCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCccccc
Q 006236           94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVD-VYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEEL  172 (655)
Q Consensus        94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D-~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~  172 (655)
                       |..|.||||+|+..|+   .+++++|+++|++++..| .+|.||||+|+.    +..++.+++++|+++|++++..|..
T Consensus        84 -d~~g~tpLh~A~~~g~---~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a----~~~~~~~~v~~Ll~~ga~~~~~~~~  155 (229)
T 2vge_A           84 -DSHGWTPLHCAASCND---TVICMALVQHGAAIFATTLSDGATAFEKCDP----YREGYADCATYLADVEQSMGLMNSG  155 (229)
T ss_dssp             -CTTCCCHHHHHHHTTC---HHHHHHHHTTTCCTTCCCSSTTCCTGGGCCT----TSTTHHHHHHHHHHHHHHTTTSGGG
T ss_pred             -CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCcccccCCCCCCHHHHHHH----HhcChHHHHHHHHHcCCCcccccCC
Confidence             9999999999999999   999999999999999997 699999999921    2489999999999999999999888


Q ss_pred             CCCCcccc
Q 006236          173 VNIPVPQL  180 (655)
Q Consensus       173 g~tpl~~l  180 (655)
                      +.+++...
T Consensus       156 ~~~~l~~~  163 (229)
T 2vge_A          156 AVYALWDY  163 (229)
T ss_dssp             EEEESSCB
T ss_pred             chHHHHHH
Confidence            87776433

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.86  E-value=1.6e-21  Score=196.36  Aligned_cols=142  Identities=21%  Similarity=0.180  Sum_probs=85.4

Q ss_pred             ccCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccc
Q 006236           13 LYNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNR   92 (655)
Q Consensus        13 ~~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~   92 (655)
                      +..|.|+||.|+..|+.+.++.||+ .|++++..+             ..|+||||+|+..|+.+++++|++.+..+++.
T Consensus        54 d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~-------------~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~  119 (253)
T 1yyh_A           54 DRTGETALHLAARYSRSDAAKRLLE-ASADANIQD-------------NMGRTPLHAAVSADAQGVFQILIRNRATDLDA  119 (253)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCC-------------TTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTC
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCCC-------------CCCCCHHHHHHHcCCHHHHHHHHHcCCCCccc
Confidence            3568899999999999988887776 899999875             44555555555555555555555554224554


Q ss_pred             ccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCccccc
Q 006236           93 ACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEEL  172 (655)
Q Consensus        93 ~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~  172 (655)
                      . +..|.||||+|+..|+   .+++++|++.|++++.+|..|.||||+|+.      .++.+++++|+++|++++..|..
T Consensus       120 ~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~------~~~~~~v~~Ll~~ga~~~~~~~~  189 (253)
T 1yyh_A          120 R-MHDGTTPLILAARLAV---EGMLEDLINSHADVNAVDDLGKSALHWAAA------VNNVDAAVVLLKNGANKDMQNNR  189 (253)
T ss_dssp             C-CTTCCCHHHHHHHHTC---SSHHHHHHHTTCCTTCBCTTSCBHHHHHHH------HTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             c-CCCCCcHHHHHHHcCh---HHHHHHHHHcCCCCCCcCCCCCCHHHHHHH------cCCHHHHHHHHHcCCCCCCcCCC
Confidence            4 4555555555555555   555555555555555555555555555544      45555555555555555555555


Q ss_pred             CCCCcc
Q 006236          173 VNIPVP  178 (655)
Q Consensus       173 g~tpl~  178 (655)
                      |.+|+.
T Consensus       190 g~tpL~  195 (253)
T 1yyh_A          190 EETPLF  195 (253)
T ss_dssp             SCCHHH
T ss_pred             CCCHHH
Confidence            555543

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.85  E-value=3.4e-21  Score=185.48  Aligned_cols=147  Identities=18%  Similarity=0.231  Sum_probs=133.3

Q ss_pred             ccCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccc
Q 006236           13 LYNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNR   92 (655)
Q Consensus        13 ~~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~   92 (655)
                      +..|.|+||.|+..|+.+.++.+|+ .|++++..+             ..|.||||+|+..|+.+++++|++.+.++++.
T Consensus        36 ~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~-------------~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~  101 (201)
T 3hra_A           36 DTEGNTPLNIAVHNNDIEIAKALID-RGADINLQN-------------SISDSPYLYAGAQGRTEILAYMLKHATPDLNK  101 (201)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCC-------------TTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCCC-------------CCCCCHHHHHHHcCCHHHHHHHHhccCccccc
Confidence            3678999999999999988887776 899999884             88999999999999999999999665489999


Q ss_pred             ccCCCCChHHHHHHHcCCCChHHHHHHHHhCC-CCCcccCCCCCCccchhhhccCCCCcCh-----HHHHHHHHhCCCCC
Q 006236           93 ACGSDGFTALHCAVAGGANSSFEVVKLLLSAS-ADVNCVDVYGNKPVDLIPVAMKSPLHSR-----KRAIELLLKGDHTI  166 (655)
Q Consensus        93 ~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~G-ADvn~~D~~G~TPLhlAa~~~~~~~~g~-----~eivelLL~~GAdi  166 (655)
                      . +..|.||||+|+..|+   .+++++|++.| ++++.+|..|.||||+|+.      .+.     .+++++|+++|+++
T Consensus       102 ~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~------~~~~~~~~~~~v~~Ll~~ga~~  171 (201)
T 3hra_A          102 H-NRYGGNALIPAAEKGH---IDNVKLLLEDGREDIDFQNDFGYTALIEAVG------LREGNQLYQDIVKLLMENGADQ  171 (201)
T ss_dssp             C-CTTSCCSHHHHHHTTC---HHHHHHHHHHCCCCTTCCCTTSCCHHHHHHH------SSCCSHHHHHHHHHHHHTTCCT
T ss_pred             c-cCCCCcHHHHHHHcCC---HHHHHHHHHcCCCCcCCCCCCCCCHHHHHHH------hccchhhHHHHHHHHHHCCCCC
Confidence            8 9999999999999999   99999999999 9999999999999999997      444     99999999999999


Q ss_pred             CcccccCCCCccccccc
Q 006236          167 FEEEELVNIPVPQLSKD  183 (655)
Q Consensus       167 n~~d~~g~tpl~~l~~~  183 (655)
                      +.+|..|.+|+..+...
T Consensus       172 ~~~~~~g~t~l~~A~~~  188 (201)
T 3hra_A          172 SIKDNSGRTAMDYANQK  188 (201)
T ss_dssp             TCCCTTSCCHHHHHHHH
T ss_pred             CccCCCCCCHHHHHHHc
Confidence            99999999998665443

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.85  E-value=4.4e-21  Score=188.66  Aligned_cols=144  Identities=22%  Similarity=0.339  Sum_probs=122.3

Q ss_pred             CCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccc
Q 006236           15 NKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRAC   94 (655)
Q Consensus        15 ~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~   94 (655)
                      .+.++|+.||..|+.+.++.+|...+..++..             |..|.||||+|+..|+.+++++|++.| ++++.. 
T Consensus         5 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-------------~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~-   69 (231)
T 3aji_A            5 VSNIMICNLAYSGKLDELKERILADKSLATRT-------------DQDSRTALHWACSAGHTEIVEFLLQLG-VPVNDK-   69 (231)
T ss_dssp             CSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCC-------------CTTSCCHHHHHHHHTCHHHHHHHHHTT-CCSCCC-
T ss_pred             cccchHHHHHHhCCHHHHHHHHHhchhhhhcC-------------CCCCCCHHHHHHHcCcHHHHHHHHHhC-CCCCCc-
Confidence            46788888999999999888888666656665             478889999999999999999999988 888887 


Q ss_pred             CCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccCC
Q 006236           95 GSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVN  174 (655)
Q Consensus        95 d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~  174 (655)
                      +..|.||||+|+..|+   .+++++|+++|++++..|..|.||||+|+.      .++.+++++|+++|++++..+..|.
T Consensus        70 ~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~------~~~~~~~~~Ll~~g~~~~~~~~~g~  140 (231)
T 3aji_A           70 DDAGWSPLHIAASAGX---DEIVKALLVKGAHVNAVNQNGCTPLHYAAS------KNRHEIAVMLLEGGANPDAKDHYDA  140 (231)
T ss_dssp             CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHH------TTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             CCCCCCHHHHHHHcCH---HHHHHHHHHcCCCCCCCCCCCCCHHHHHHH------cCCHHHHHHHHHcCCCCCCcCCCCC
Confidence            8888999999999888   899999999999999888899999999887      7888899999999999988888888


Q ss_pred             CCcccccc
Q 006236          175 IPVPQLSK  182 (655)
Q Consensus       175 tpl~~l~~  182 (655)
                      +++..+..
T Consensus       141 t~L~~A~~  148 (231)
T 3aji_A          141 TAMHRAAA  148 (231)
T ss_dssp             CHHHHHHH
T ss_pred             cHHHHHHH
Confidence            88854443

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.85  E-value=4.9e-21  Score=187.34  Aligned_cols=143  Identities=21%  Similarity=0.182  Sum_probs=98.9

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA   93 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~   93 (655)
                      ..|.|+||.|+..|+.+.++.+|+ .|++++..+             ..|+||||+|+..|+.+++++|++.+..+++..
T Consensus        23 ~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~-------------~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~   88 (223)
T 2f8y_A           23 RTGETALHLAARYSRSDAAKRLLE-ASADANIQD-------------NMGRTPLHAAVSADAQGVFQILIRNRATDLDAR   88 (223)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCC-------------TTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCC
T ss_pred             CCCCchHHHHHHcCCHHHHHHHHH-cCCCCCCcC-------------CCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccC
Confidence            568899999999999998888876 799998875             566666666666666666666666662356655


Q ss_pred             cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccC
Q 006236           94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELV  173 (655)
Q Consensus        94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g  173 (655)
                       +..|.||||+|+..|+   .+++++|++.|++++..|..|.||||+|+.      .++.+++++|+++|++++..|..|
T Consensus        89 -~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~------~~~~~~v~~Ll~~g~~~~~~~~~g  158 (223)
T 2f8y_A           89 -MHDGTTPLILAARLAV---EGMLEDLINSHADVNAVDDLGKSALHWAAA------VNNVDAAVVLLKNGANKDMQNNRE  158 (223)
T ss_dssp             -CTTCCCHHHHHHHHTC---HHHHHHHHHTTCCTTCBCTTSCBHHHHHHH------TTCHHHHHHHHHTTCCTTCCCTTC
T ss_pred             -CCCCCcHHHHHHHhCc---HHHHHHHHHcCCCCcCcCCCCCcHHHHHHH------cCCHHHHHHHHHcCCCCCCcCCCC
Confidence             6666666666666666   666666666666666666666666666665      566666666666666666666666


Q ss_pred             CCCcccc
Q 006236          174 NIPVPQL  180 (655)
Q Consensus       174 ~tpl~~l  180 (655)
                      .+|+..+
T Consensus       159 ~t~L~~A  165 (223)
T 2f8y_A          159 ETPLFLA  165 (223)
T ss_dssp             CCHHHHH
T ss_pred             cCHHHHH
Confidence            6666433

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.85  E-value=5.6e-21  Score=186.95  Aligned_cols=146  Identities=19%  Similarity=0.223  Sum_probs=134.3

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA   93 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~   93 (655)
                      ..|.|+|+.|+..++.+.++.++.....+++..+             ..|.||||+|+..|+.+++++|++.| ++++..
T Consensus        56 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~-------------~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~  121 (223)
T 2f8y_A           56 NMGRTPLHAAVSADAQGVFQILIRNRATDLDARM-------------HDGTTPLILAARLAVEGMLEDLINSH-ADVNAV  121 (223)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCC-------------TTCCCHHHHHHHHTCHHHHHHHHHTT-CCTTCB
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCC-------------CCCCcHHHHHHHhCcHHHHHHHHHcC-CCCcCc
Confidence            6788999999999999998888874444788774             88999999999999999999999999 999998


Q ss_pred             cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccC
Q 006236           94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELV  173 (655)
Q Consensus        94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g  173 (655)
                       +..|.||||+|+..|+   .+++++|+++|++++.+|..|.||||+|+.      .++.+++++|+++|++++.+|..|
T Consensus       122 -~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~------~~~~~~v~~Ll~~ga~~~~~~~~g  191 (223)
T 2f8y_A          122 -DDLGKSALHWAAAVNN---VDAAVVLLKNGANKDMQNNREETPLFLAAR------EGSYETAKVLLDHFANRDITDHMD  191 (223)
T ss_dssp             -CTTSCBHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTCCCHHHHHHH------HTCHHHHHHHHHTTCCTTCCCTTC
T ss_pred             -CCCCCcHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCcCHHHHHHH------cCCHHHHHHHHHcCCCCccccccC
Confidence             9999999999999999   999999999999999999999999999997      899999999999999999999999


Q ss_pred             CCCccccccc
Q 006236          174 NIPVPQLSKD  183 (655)
Q Consensus       174 ~tpl~~l~~~  183 (655)
                      .+|+..+...
T Consensus       192 ~t~l~~A~~~  201 (223)
T 2f8y_A          192 RLPRDIAQER  201 (223)
T ss_dssp             CCHHHHHHHT
T ss_pred             CCHHHHHHHh
Confidence            9998655443

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.85  E-value=2.7e-21  Score=194.60  Aligned_cols=147  Identities=19%  Similarity=0.214  Sum_probs=134.8

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA   93 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~   93 (655)
                      ..|.|+||.|+..++.+.++.+|.....+++..+             ..|.||||+|+..|+.+++++|++.| +++|..
T Consensus        88 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~-------------~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~  153 (253)
T 1yyh_A           88 NMGRTPLHAAVSADAQGVFQILIRNRATDLDARM-------------HDGTTPLILAARLAVEGMLEDLINSH-ADVNAV  153 (253)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCC-------------TTCCCHHHHHHHHTCSSHHHHHHHTT-CCTTCB
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccC-------------CCCCcHHHHHHHcChHHHHHHHHHcC-CCCCCc
Confidence            6788999999999999988888874444888874             88999999999999999999999999 999998


Q ss_pred             cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccC
Q 006236           94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELV  173 (655)
Q Consensus        94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g  173 (655)
                       +..|.||||+|+..|+   .+++++|+++|++++.+|..|.||||+|+.      .++.+++++|+++|++++.+|..|
T Consensus       154 -d~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~------~~~~~~v~~Ll~~ga~~~~~d~~g  223 (253)
T 1yyh_A          154 -DDLGKSALHWAAAVNN---VDAAVVLLKNGANKDMQNNREETPLFLAAR------EGSYETAKVLLDHFANRDITDHMD  223 (253)
T ss_dssp             -CTTSCBHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHH------HTCHHHHHHHHHTTCCTTCCCTTC
T ss_pred             -CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCCHHHHHHH------CCCHHHHHHHHHcCCCccccccCC
Confidence             9999999999999999   999999999999999999999999999997      899999999999999999999999


Q ss_pred             CCCcccccccC
Q 006236          174 NIPVPQLSKDG  184 (655)
Q Consensus       174 ~tpl~~l~~~~  184 (655)
                      .+|+..+...+
T Consensus       224 ~tpl~~A~~~g  234 (253)
T 1yyh_A          224 RLPRDIAQERM  234 (253)
T ss_dssp             CCHHHHHHHTT
T ss_pred             CCHHHHHHHcC
Confidence            99986665443

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.85  E-value=8.7e-21  Score=187.11  Aligned_cols=157  Identities=13%  Similarity=0.114  Sum_probs=123.2

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCc------c--------------c--cc--ccCCccCCCCCChHHHH
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSF------W--------------Y--GR--RIGSKKMGFEERTPIMI   69 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dl------w--------------~--g~--~~~~~~~d~~G~TPLh~   69 (655)
                      ..|.|+|+.|+..|+.+.++.+++ .|++++..+.      .              .  +.  ..+....|..|.||||+
T Consensus        44 ~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~  122 (241)
T 1k1a_A           44 NLRQTPLHLAVITTLPSVVRLLVT-AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHV  122 (241)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHH
T ss_pred             ccCCCHHHHHHHcCCHHHHHHHHH-cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHH
Confidence            458899999999998888777775 8899887651      0              0  11  11444557788888888


Q ss_pred             HHHcCCHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCC
Q 006236           70 AAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPL  149 (655)
Q Consensus        70 AA~~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~  149 (655)
                      |+..|+.+++++|++.| ++++...+..|.||||+|+..|+   .+++++|+++|++++.+|..|.||||+|+.      
T Consensus       123 A~~~~~~~~~~~Ll~~g-~~~~~~~~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~------  192 (241)
T 1k1a_A          123 AVNTECQETVQLLLERG-ADIDAVDIKSGRSPLIHAVENNS---LSMVQLLLQHGANVNAQMYSGSSALHSASG------  192 (241)
T ss_dssp             HHHHTCHHHHHHHHHTT-CCTTCCCTTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCBCTTSCBHHHHHHH------
T ss_pred             HHHcCCHHHHHHHHHcC-CCcccccccCCCcHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCCHHHHHHH------
Confidence            88888888888888888 88887722778888888888888   888888888888888888888888888876      


Q ss_pred             cChHHHHHHHHhCCCCCCcccccCCCCccccc
Q 006236          150 HSRKRAIELLLKGDHTIFEEEELVNIPVPQLS  181 (655)
Q Consensus       150 ~g~~eivelLL~~GAdin~~d~~g~tpl~~l~  181 (655)
                      .++.+++++|+++|++++.+|..|.+|+..+.
T Consensus       193 ~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~  224 (241)
T 1k1a_A          193 RGLLPLVRTLVRSGADSSLKNCHNDTPLMVAR  224 (241)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCS
T ss_pred             cCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHH
Confidence            78888888888888888888888888876554

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.85  E-value=6.8e-21  Score=188.07  Aligned_cols=156  Identities=21%  Similarity=0.337  Sum_probs=102.6

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCc--------------------ccccc-cCCccCCCCCChHHHHHHH
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSF--------------------WYGRR-IGSKKMGFEERTPIMIAAM   72 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dl--------------------w~g~~-~~~~~~d~~G~TPLh~AA~   72 (655)
                      ..|.|+|+.|+..|+.+.++.++. .|++++..+.                    +.... ...+..+..|.||||+|+.
T Consensus        42 ~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~  120 (237)
T 3b7b_A           42 EDQRTPLMEAAENNHLEAVKYLIK-AGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATE  120 (237)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHT-TTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHH
T ss_pred             CCCCCHHHHHHHhCCHHHHHHHHh-CCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHH
Confidence            457788888888888877766664 7888777640                    00010 2223335566677777777


Q ss_pred             cCCHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcCh
Q 006236           73 FGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSR  152 (655)
Q Consensus        73 ~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~  152 (655)
                      .|+.+++++|++.| ++++.. +..|.||||+|+..|+   .+++++|++.|++++.+|..|.||||+|+.      .++
T Consensus       121 ~~~~~~~~~Ll~~g-~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~------~~~  189 (237)
T 3b7b_A          121 YKHVDLVKLLLSKG-SDINIR-DNEENICLHWAAFSGC---VDIAEILLAAKCDLHAVNIHGDSPLHIAAR------ENR  189 (237)
T ss_dssp             TTCHHHHHHHHHTT-CCTTCC-CTTSCCHHHHHHHHCC---HHHHHHHHTTTCCTTCCCTTCCCHHHHHHH------TTC
T ss_pred             cCCHHHHHHHHHCC-CCCCcc-CCCCCCHHHHHHHCCC---HHHHHHHHHcCCCCCCcCCCCCCHHHHHHH------hCC
Confidence            77777777777666 666666 6666777777776666   667777777777777666667777777665      666


Q ss_pred             HHHHHHHHhCCCCCCcccccCCCCccccc
Q 006236          153 KRAIELLLKGDHTIFEEEELVNIPVPQLS  181 (655)
Q Consensus       153 ~eivelLL~~GAdin~~d~~g~tpl~~l~  181 (655)
                      .+++++|+++|++++.+|.+|.+|+..+.
T Consensus       190 ~~~v~~Ll~~gad~~~~d~~g~t~l~~A~  218 (237)
T 3b7b_A          190 YDCVVLFLSRDSDVTLKNKEGETPLQCAS  218 (237)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTSCCHHHHSC
T ss_pred             HhHHHHHHHcCCCCCccCCCCCCHHHHHH
Confidence            67777777777777766666666664443

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.85  E-value=1.2e-20  Score=176.84  Aligned_cols=125  Identities=28%  Similarity=0.345  Sum_probs=114.7

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA   93 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~   93 (655)
                      ..|.|+||.|+..|+.+.++.+|+ .|+++|..+             ..|+||||+|+..|+.+++++|+++| +++|..
T Consensus        40 ~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~-------------~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~  104 (165)
T 3twr_A           40 GRQSTPLHFAAGYNRVSVVEYLLQ-HGADVHAKD-------------KGGLVPLHNACSYGHYEVAELLVKHG-AVVNVA  104 (165)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCC-------------TTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCC
T ss_pred             cCCCCHHHHHHHcChHHHHHHHHh-cCCCCCccC-------------CCCCCHHHHHHHcCcHHHHHHHHhCC-CCCCCc
Confidence            456799999999999988877776 899999885             88999999999999999999999999 999998


Q ss_pred             cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCC
Q 006236           94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDH  164 (655)
Q Consensus        94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GA  164 (655)
                       +..|.||||+|+..|+   .+++++|+++|++++.+|.+|.||||+|+       .++.+++++|+++|+
T Consensus       105 -~~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~-------~~~~~i~~~L~~~gA  164 (165)
T 3twr_A          105 -DLWKFTPLHEAAAKGK---YEICKLLLQHGADPTKKNRDGNTPLDLVK-------DGDTDIQDLLRGDAA  164 (165)
T ss_dssp             -CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCTGGGSC-------TTCHHHHHHHHTC--
T ss_pred             -CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCcccCCCCCChhHhHh-------cCChHHHHHHhhccc
Confidence             9999999999999999   99999999999999999999999999975       488899999999886

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.85  E-value=4.7e-21  Score=188.93  Aligned_cols=149  Identities=20%  Similarity=0.215  Sum_probs=128.9

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA   93 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~   93 (655)
                      ..|.|+||.|+..|+.+.++.+|. .|+++....        ....|..|.||||+|+..|+.+++++|+++| ++++..
T Consensus        35 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~~~--------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~  104 (232)
T 2rfa_A           35 AMGETALHIAALYDNLEAAMVLME-AAPELVFEP--------MTSELYEGQTALHIAVINQNVNLVRALLARG-ASVSAR  104 (232)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHH-HCGGGGGCC--------CCSTTTTTCCHHHHHHHTTCHHHHHHHHHTT-CCTTCC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHH-cCchhcccc--------ccccCCCCcCHHHHHHHcCCHHHHHHHHhCC-CCCCcc
Confidence            568999999999999998888776 787763221        1223578999999999999999999999999 999987


Q ss_pred             cCC-------------CCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHH----
Q 006236           94 CGS-------------DGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAI----  156 (655)
Q Consensus        94 ~d~-------------~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eiv----  156 (655)
                       +.             .|.||||+|+..|+   .+++++|+++|+|++.+|.+|+||||+|+.      .++.+++    
T Consensus       105 -~~~~~~~~~~~~~~~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~------~~~~~~~~~i~  174 (232)
T 2rfa_A          105 -ATGSVFHYRPHNLIYYGEHPLSFAACVGS---EEIVRLLIEHGADIRAQDSLGNTVLHILIL------QPNKTFACQMY  174 (232)
T ss_dssp             -CCSGGGSCCTTCSCCCCSSHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHT------CSCHHHHHHHH
T ss_pred             -cCCcceeecccccccCCCCHHHHHHHcCC---HHHHHHHHHCCCCCCCCCCCCCCHHHHHHH------cCChHHHHHHH
Confidence             44             79999999999999   999999999999999999999999999987      7888877    


Q ss_pred             HHHHhCCCCC------CcccccCCCCcccccc
Q 006236          157 ELLLKGDHTI------FEEEELVNIPVPQLSK  182 (655)
Q Consensus       157 elLL~~GAdi------n~~d~~g~tpl~~l~~  182 (655)
                      ++|+++|+++      +.+|..|.+|+..+..
T Consensus       175 ~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~  206 (232)
T 2rfa_A          175 NLLLSYDGGDHLKSLELVPNNQGLTPFKLAGV  206 (232)
T ss_dssp             HHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHH
T ss_pred             HHHHhcCCchhhhhhhccCCCCCCCHHHHHHH
Confidence            9999999998      4788889998865543

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.85  E-value=1.2e-21  Score=201.23  Aligned_cols=146  Identities=22%  Similarity=0.300  Sum_probs=115.0

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA   93 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~   93 (655)
                      ..+.++|++++..++...+..+|.+.|++||..+             .+|+||||+||..|+.++|++||+.+ ++++..
T Consensus        50 ~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d-------------~~G~TpLh~A~~~g~~~~v~~Ll~~~-a~~~~~  115 (269)
T 4b93_B           50 PEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTS-------------QDGSSPLHVAALHGRADLIPLLLKHG-ANAGAR  115 (269)
T ss_dssp             -------------------------CCCCTTCCC-------------TTSCCHHHHHHHTTCTTHHHHHHHTT-CCTTCC
T ss_pred             ccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcC-------------CCCCCHHHHHHHcCcHHHHHHHHhcC-CCcCcc
Confidence            3567899999999988877777778999999985             89999999999999999999999999 999998


Q ss_pred             cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccC
Q 006236           94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELV  173 (655)
Q Consensus        94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g  173 (655)
                       +..|.||||+|+..++   .+++++|++.|+++|.+|..|.||||+|+.      .++.+++++||++|++++..+..|
T Consensus       116 -~~~g~t~l~~a~~~~~---~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~------~g~~~~v~~Ll~~gadvn~~~~~g  185 (269)
T 4b93_B          116 -NADQAVPLHLACQQGH---FQVVKCLLDSNAKPNKKDLSGNTPLIYACS------GGHHELVALLLQHGASINASNNKG  185 (269)
T ss_dssp             -CTTCCCHHHHHHHHTC---HHHHHHHHHTTCCSCCCCTTCCCHHHHHHH------TTCGGGHHHHHHTTCCTTCBCTTS
T ss_pred             -CCCCCCccccccccCh---HHHHHHHHHCCCCCCCCCCCCCCHHHHHHH------CCCHHHHHHHHHCCCCCCccccCC
Confidence             9999999999999999   999999999999999999999999999997      899999999999999999999999


Q ss_pred             CCCccccccc
Q 006236          174 NIPVPQLSKD  183 (655)
Q Consensus       174 ~tpl~~l~~~  183 (655)
                      .+|+..+...
T Consensus       186 ~t~Lh~A~~~  195 (269)
T 4b93_B          186 NTALHEAVIE  195 (269)
T ss_dssp             CBHHHHHHHT
T ss_pred             CcHHHHHHHc
Confidence            9999655544

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.84  E-value=7.3e-21  Score=177.20  Aligned_cols=126  Identities=21%  Similarity=0.236  Sum_probs=114.6

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA   93 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~   93 (655)
                      ..|.|+|+.|+. |+.+.++.++. .|++++..+             ..|.||||+|+..|+.+++++|+++| +++|..
T Consensus        36 ~~g~t~L~~A~~-~~~~~v~~Ll~-~g~~~~~~~-------------~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~   99 (162)
T 1ihb_A           36 GFGRTALQVMKL-GNPEIARRLLL-RGANPDLKD-------------RTGFAVIHDAARAGFLDTLQTLLEFQ-ADVNIE   99 (162)
T ss_dssp             TTSCCHHHHCCS-SCHHHHHHHHH-TTCCTTCCC-------------TTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCC
T ss_pred             ccCccHHHHHHc-CcHHHHHHHHH-cCCCCCCCC-------------CCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCc
Confidence            457888888777 88887777765 899999884             88999999999999999999999999 999998


Q ss_pred             cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCC-CcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCC
Q 006236           94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASAD-VNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHT  165 (655)
Q Consensus        94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAD-vn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAd  165 (655)
                       +..|.||||+|+..|+   .+++++|+++|++ ++..|..|.||||+|+.      .++.+++++|+++|||
T Consensus       100 -~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~------~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          100 -DNEGNLPLHLAAKEGH---LRVVEFLVKHTASNVGHRNHKGDTACDLARL------YGRNEVVSLMQANGAG  162 (162)
T ss_dssp             -CTTSCCHHHHHHHTTC---HHHHHHHHHHSCCCTTCCCTTSCCHHHHHHH------TTCHHHHHHHHHTC--
T ss_pred             -CCCCCCHHHHHHHcCC---HHHHHHHHHccCCCCCCcCCCCCcHHHHHHH------cCCHHHHHHHHHhCCC
Confidence             9999999999999999   9999999999998 69999999999999997      8999999999999986

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.84  E-value=6.5e-21  Score=173.76  Aligned_cols=126  Identities=28%  Similarity=0.369  Sum_probs=109.0

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA   93 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~   93 (655)
                      ..|.|+||.|+..|+.+.++.+|. .|++++..+             ..|+||||+|+..|+.+++++|++.| ++++..
T Consensus         8 ~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~-------------~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~   72 (137)
T 3c5r_A            8 HRGETLLHIASIKGDIPSVEYLLQ-NGSDPNVKD-------------HAGWTPLHEACNHGHLKVVELLLQHK-ALVNTT   72 (137)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHH-TTCCSCCCC-------------TTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcCC-------------CCCCCHHHHHHHcCCHHHHHHHHHcC-CcccCc
Confidence            568899999999999998887776 899998874             88999999999999999999999999 999988


Q ss_pred             cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCC
Q 006236           94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDH  164 (655)
Q Consensus        94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GA  164 (655)
                       +..|.||||+|+..|+   .+++++|+++|++++.+|.+|.||||+|+.      .+..+++++|.+.+.
T Consensus        73 -~~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~------~~~~~~l~~l~~~~~  133 (137)
T 3c5r_A           73 -GYQNDSPLHDAAKNGH---VDIVKLLLSYGASRNAVNIFGLRPVDYTDD------ESMKSLLLLPEKNES  133 (137)
T ss_dssp             -CGGGCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCGGGGCCC------HHHHHHHSCC-----
T ss_pred             -CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCCCCCCCCHHHHHhh------ccHHHHHhhcccccc
Confidence             8899999999999999   999999999999999999999999999875      777888887776554

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.84  E-value=6.9e-21  Score=194.58  Aligned_cols=151  Identities=21%  Similarity=0.386  Sum_probs=130.4

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA   93 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~   93 (655)
                      ..+.++|+.|+..|+.+.++.+|. .|+++|..+             ..|.||||+||..|+.+++++|+++| +++|..
T Consensus        38 ~~~~t~l~~A~~~g~~~~v~~Ll~-~g~~~~~~~-------------~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~  102 (299)
T 1s70_B           38 FDDGAVFLAACSSGDTEEVLRLLE-RGADINYAN-------------VDGLTALHQACIDDNVDMVKFLVENG-ANINQP  102 (299)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHHH-HCCCTTCBC-------------TTCCBHHHHHHHTTCHHHHHHHHHTT-CCTTCC
T ss_pred             cCCccHHHHHHHcCCHHHHHHHHH-cCCCCcccC-------------CCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCC
Confidence            466789999999999999998886 899999884             88999999999999999999999999 999998


Q ss_pred             cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhh------------------------------
Q 006236           94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPV------------------------------  143 (655)
Q Consensus        94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~------------------------------  143 (655)
                       +..|.||||+|+..|+   .++|++|+++|++++..|..|.||||+|+.                              
T Consensus       103 -~~~g~tpL~~A~~~g~---~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~  178 (299)
T 1s70_B          103 -DNEGWIPLHAAASCGY---LDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIML  178 (299)
T ss_dssp             -CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred             -CCCCCcHHHHHHHcCC---HHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHH
Confidence             9999999999999999   999999999999999888777666665532                              


Q ss_pred             ------------------------ccCCCCcChHHHHHHHHhCCCCCCcccccCCCCccccccc
Q 006236          144 ------------------------AMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLSKD  183 (655)
Q Consensus       144 ------------------------~~~~~~~g~~eivelLL~~GAdin~~d~~g~tpl~~l~~~  183 (655)
                                              ++.++..++.+++++|+++|++++..|..|.+|+..+...
T Consensus       179 ~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~  242 (299)
T 1s70_B          179 RDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHW  242 (299)
T ss_dssp             HHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             HHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhc
Confidence                                    0011236788999999999999999999999998655443

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.84  E-value=2.1e-20  Score=176.63  Aligned_cols=125  Identities=26%  Similarity=0.412  Sum_probs=117.1

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA   93 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~   93 (655)
                      ..|.|+||.|+..|+.+.++.+|. .|++++..+             ..|.||||+|+..|+.+++++|+++| ++++..
T Consensus        45 ~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~-------------~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~  109 (169)
T 2y1l_E           45 ASGWTPLHLAAFNGHLEIVEVLLK-NGADVNAVD-------------HAGMTPLRLAALFGHLEIVEVLLKNG-ADVNAN  109 (169)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCC-------------TTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCccC-------------CCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCC
Confidence            468899999999999998887776 899999884             88999999999999999999999999 999998


Q ss_pred             cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCC
Q 006236           94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGD  163 (655)
Q Consensus        94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~G  163 (655)
                       +..|.||||+|+..|+   .+++++|+++|++++.+|..|.||||+|+.      .++.+++++|++.|
T Consensus       110 -~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~------~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          110 -DMEGHTPLHLAAMFGH---LEIVEVLLKNGADVNAQDKFGKTAFDISID------NGNEDLAEILQKLN  169 (169)
T ss_dssp             -CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHH------TTCHHHHHHHHTC-
T ss_pred             -CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCCHHHHHHH------hCCHHHHHHHHHcC
Confidence             9999999999999999   999999999999999999999999999997      89999999999876

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.84  E-value=5.1e-21  Score=196.50  Aligned_cols=147  Identities=24%  Similarity=0.246  Sum_probs=133.3

Q ss_pred             cccCCchHHHHHHHhCCHHHHHHHHHhcCC-CCCCCCcccccccCCccCCCCCChHHHHHH-----HcCCHHHHHHHHHc
Q 006236           12 ALYNKSSILLELSASDDISAFKREIEEKGF-DVDEPSFWYGRRIGSKKMGFEERTPIMIAA-----MFGSVAVLKYVIET   85 (655)
Q Consensus        12 l~~~g~s~LL~AAa~gd~~~vk~LL~~~Ga-dIn~~dlw~g~~~~~~~~d~~G~TPLh~AA-----~~G~~evvk~LL~~   85 (655)
                      .+.+|.|+||+|+..|+.+.++.+|. .|+ ++|..+             ..|.||||+|+     ..++.+++++|++.
T Consensus       107 ~d~~g~T~Lh~A~~~g~~~~v~~Ll~-~g~~~~~~~~-------------~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~  172 (276)
T 4hbd_A          107 ADSNGNTALHYSVSHANFPVVQQLLD-SGVCKVDKQN-------------RAGYSPIMLTALATLKTQDDIETVLQLFRL  172 (276)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHH-TSCCCTTCCC-------------TTSCCHHHHGGGCCCCSHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHCCCHHHHHHHHH-CCCCcCCCCC-------------CCCCCHHHHHHHHHhhhhhhHHHHHHHHHc
Confidence            34678999999999999998888887 676 888874             89999999999     66889999999999


Q ss_pred             CCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHh-CCC
Q 006236           86 GKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLK-GDH  164 (655)
Q Consensus        86 G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~-~GA  164 (655)
                      | ++++.. +..|.||||+|+..|+   .++|++|+++|+|+|.+|.+|+||||+|+.      .++.+++++||+ .|+
T Consensus       173 g-~~~~~~-~~~g~tpLh~A~~~g~---~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~------~g~~~iv~~Ll~~~ga  241 (276)
T 4hbd_A          173 G-NINAKA-SQAGQTALMLAVSHGR---VDVVKALLACEADVNVQDDDGSTALMCACE------HGHKEIAGLLLAVPSC  241 (276)
T ss_dssp             S-CTTCCC-TTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHH------HTCHHHHHHHHTSTTC
T ss_pred             C-CCcccc-CCCCCCHHHHHHHcCC---HHHHHHHHhCCCCCCCCCCCCCCHHHHHHH------CCCHHHHHHHHhcCCC
Confidence            9 888877 8899999999999999   999999999999999999999999999997      899999999999 899


Q ss_pred             CCCcccccCCCCccccccc
Q 006236          165 TIFEEEELVNIPVPQLSKD  183 (655)
Q Consensus       165 din~~d~~g~tpl~~l~~~  183 (655)
                      +++.+|.+|.+|+..+...
T Consensus       242 d~~~~d~~g~TpL~~A~~~  260 (276)
T 4hbd_A          242 DISLTDRDGSTALMVALDA  260 (276)
T ss_dssp             CTTCCCTTSCCHHHHHHHH
T ss_pred             CCcCcCCCCCCHHHHHHHc
Confidence            9999999999998655443

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.84  E-value=2.1e-21  Score=189.15  Aligned_cols=150  Identities=12%  Similarity=0.127  Sum_probs=126.2

Q ss_pred             CchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCH----HHHHHHHHcCCCccc
Q 006236           16 KSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSV----AVLKYVIETGKVNVN   91 (655)
Q Consensus        16 g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~----evvk~LL~~G~aDvN   91 (655)
                      ++++|+.||..|+.+.++.++. .+  ++..+            +..|+||||+|+..|+.    +++++||+.| +|+|
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~-~~--~~~~~------------~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~G-advn   69 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFE-KG--YEDKE------------SVLKSNILYDVLRNNNDEARYKISMFLINKG-ADIK   69 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHH-HS--SSCHH------------HHHTTTHHHHHTTCSCHHHHHHHHHHHHHTT-CCSS
T ss_pred             cccHHHHHHHcCCHHHHHHHHh-cC--ccccc------------ccCCCCHHHHHHHcCCcchHHHHHHHHHHCC-CCCC
Confidence            4678999999999999998886 33  44432            36799999999999975    5999999999 9999


Q ss_pred             cccCCCCChHHHHHHHcCCCC---hHHHHHHHHhCCCCCcccCCCCC-CccchhhhccCCCCcChHHHHHHHHh-CCCCC
Q 006236           92 RACGSDGFTALHCAVAGGANS---SFEVVKLLLSASADVNCVDVYGN-KPVDLIPVAMKSPLHSRKRAIELLLK-GDHTI  166 (655)
Q Consensus        92 ~~~d~~G~TpLH~Aa~~G~~~---~~eiVklLL~~GADvn~~D~~G~-TPLhlAa~~~~~~~~g~~eivelLL~-~GAdi  166 (655)
                      .+ +..|+||||+|+..|+.+   ..+++++||++|+|+|.+|..|. ||||+|+. ......+..+++++||+ +|+++
T Consensus        70 ~~-d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~-~~~~~~~~~~iv~~Ll~~~gad~  147 (186)
T 3t8k_A           70 SR-TKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFN-YFVDENEMIPLYKLIFSQSGLQL  147 (186)
T ss_dssp             CC-CTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGG-CCSCHHHHHHHHHHHHTSTTCCT
T ss_pred             CC-CCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHH-cCCChhhHHHHHHHHHHhcCCCC
Confidence            99 899999999999998633   26899999999999999999999 99999985 01111345689999999 99999


Q ss_pred             CcccccCCCCccccccc
Q 006236          167 FEEEELVNIPVPQLSKD  183 (655)
Q Consensus       167 n~~d~~g~tpl~~l~~~  183 (655)
                      +.+|..|.+|+..+...
T Consensus       148 ~~~d~~G~TpL~~A~~~  164 (186)
T 3t8k_A          148 LIKDKWGLTALEFVKRC  164 (186)
T ss_dssp             TCCCTTSCCHHHHHHTT
T ss_pred             cccCCCCCCHHHHHHHc
Confidence            99999999999766543

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.83  E-value=2.2e-21  Score=194.80  Aligned_cols=159  Identities=16%  Similarity=0.163  Sum_probs=133.1

Q ss_pred             ccCCchHHHHHHHh---CCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCc
Q 006236           13 LYNKSSILLELSAS---DDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVN   89 (655)
Q Consensus        13 ~~~g~s~LL~AAa~---gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aD   89 (655)
                      +..|.|+||.|+..   |+.+.++.||+ .|++++..+...  .......|..|.||||+|+..|+.+++++||++| ++
T Consensus        40 d~~g~t~L~~A~~~~~~g~~~~v~~Ll~-~g~~~~~~~~~~--~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~  115 (256)
T 2etb_A           40 GSTGKTCLMKAVLNLQDGVNACIMPLLQ-IDKDSGNPKPLV--NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENG-AD  115 (256)
T ss_dssp             TTTTBCHHHHHHHTCBTTBCTTHHHHHH-HHHHTTCSSCGG--GCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTT-CC
T ss_pred             CCCCCCHHHHHHHccccchHHHHHHHHh-cCCcccchhhhc--ccccccccccCCCHHHHHHHcCCHHHHHHHHHcC-CC
Confidence            35689999999999   88888877775 788776543111  1122234578999999999999999999999999 99


Q ss_pred             cccccCCC-------------CChHHHHHHHcCCCChHHHHHHHHh---CCCCCcccCCCCCCccchhhhccCCCCcChH
Q 006236           90 VNRACGSD-------------GFTALHCAVAGGANSSFEVVKLLLS---ASADVNCVDVYGNKPVDLIPVAMKSPLHSRK  153 (655)
Q Consensus        90 vN~~~d~~-------------G~TpLH~Aa~~G~~~~~eiVklLL~---~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~  153 (655)
                      +|.. +..             |.||||+|+..|+   .++|++|++   +|+++|.+|.+|+||||+|+.    ...++.
T Consensus       116 ~~~~-~~~~~~~~~~~~~~~~g~tpL~~A~~~~~---~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~----~~~~~~  187 (256)
T 2etb_A          116 VHLR-ACGRFFQKHQGTCFYFGELPLSLAACTKQ---WDVVTYLLENPHQPASLEATDSLGNTVLHALVM----IADNSP  187 (256)
T ss_dssp             TTCC-CCSGGGSCCSSSCCCSCSSHHHHHHHTTC---HHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHH----HCCSCH
T ss_pred             CCcc-cccccccccccccccCCCCHHHHHHHcCC---HHHHHHHHhccccCCCcCccCCCCCCHHHHHHH----cccCCc
Confidence            9988 655             9999999999999   999999999   999999999999999999985    124666


Q ss_pred             H-------HHHHHHhCCCCC-------CcccccCCCCccccccc
Q 006236          154 R-------AIELLLKGDHTI-------FEEEELVNIPVPQLSKD  183 (655)
Q Consensus       154 e-------ivelLL~~GAdi-------n~~d~~g~tpl~~l~~~  183 (655)
                      +       ++++|+++|+++       +..|..|.+|+..+...
T Consensus       188 ~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~  231 (256)
T 2etb_A          188 ENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKE  231 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHT
T ss_pred             hhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHh
Confidence            7       999999999999       88999999998665543

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.83  E-value=4.4e-21  Score=201.67  Aligned_cols=145  Identities=14%  Similarity=0.041  Sum_probs=130.3

Q ss_pred             ccCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCC---HHHHHHHHHcCCCc
Q 006236           13 LYNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGS---VAVLKYVIETGKVN   89 (655)
Q Consensus        13 ~~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~---~evvk~LL~~G~aD   89 (655)
                      +..|.|+||+||..|+.+.++.||+ +|+++|.++             .+|+||||+|+..|+   .++++.|++.+.++
T Consensus       128 d~~g~TpLh~Aa~~g~~~~v~~Ll~-~Gad~n~~d-------------~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~  193 (327)
T 1sw6_A          128 DEHGNTPLHWLTSIANLELVKHLVK-HGSNRLYGD-------------NMGESCLVKAVKSVNNYDSGTFEALLDYLYPC  193 (327)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTBCC-------------TTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGG
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCcC-------------CCCCCHHHHHHHhcccccHHHHHHHHHhhhcc
Confidence            4578999999999999988877776 899999884             899999999999998   78888999886578


Q ss_pred             cccccCCCCChHHHHHHH----cCCCChHHHHHHHHhCCC----------------------------------------
Q 006236           90 VNRACGSDGFTALHCAVA----GGANSSFEVVKLLLSASA----------------------------------------  125 (655)
Q Consensus        90 vN~~~d~~G~TpLH~Aa~----~G~~~~~eiVklLL~~GA----------------------------------------  125 (655)
                      ++.. +..|+||||+|+.    .|+   .+++++|++.++                                        
T Consensus       194 ~~~~-d~~g~tpLh~A~~~~~~~g~---~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~  269 (327)
T 1sw6_A          194 LILE-DSMNRTILHHIIITSGMTGC---SAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLK  269 (327)
T ss_dssp             GGEE-CTTCCCHHHHHHHHHTSTTC---HHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHH
T ss_pred             ccCC-CCCCCCHHHHHHHHcccccc---HHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHH
Confidence            9998 9999999999999    888   999999998743                                        


Q ss_pred             -----CCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccCCCCccccc
Q 006236          126 -----DVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLS  181 (655)
Q Consensus       126 -----Dvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~tpl~~l~  181 (655)
                           ++|.+|.+|+||||+|+.      .++.+++++||++|++++.+|.+|.+|+..+.
T Consensus       270 ~Ll~~~~n~~d~~G~TpLh~A~~------~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~  324 (327)
T 1sw6_A          270 WIIANMLNAQDSNGDTCLNIAAR------LGNISIVDALLDYGADPFIANKSGLRPVDFGA  324 (327)
T ss_dssp             HHHHHTTTCCCTTSCCHHHHHHH------HCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             HHHHhCCCCCCCCCCCHHHHHHH------cCCHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence                 688889999999999997      89999999999999999999999999987654

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.83  E-value=7.3e-21  Score=191.75  Aligned_cols=146  Identities=17%  Similarity=0.189  Sum_probs=127.9

Q ss_pred             ccCCchHHHHHHHhCCHHHHHHHHHhcCCC---CCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCc
Q 006236           13 LYNKSSILLELSASDDISAFKREIEEKGFD---VDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVN   89 (655)
Q Consensus        13 ~~~g~s~LL~AAa~gd~~~vk~LL~~~Gad---In~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aD   89 (655)
                      +..|.|+||.|+..|+.+.++.+|. .|++   +|..             |..|+||||+|+..|+.+++++|+++| ++
T Consensus         6 d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~-------------~~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~   70 (282)
T 1oy3_D            6 TEDGDTALHLAVIHQHEPFLDFLLG-FSAGHEYLDLQ-------------NDLGQTALHLAAILGEASTVEKLYAAG-AG   70 (282)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHH-HHTTSGGGGCC-------------CTTSCCHHHHHHHHTCHHHHHHHHHTT-CC
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHh-cCCCccccccc-------------CCCCCCHHHHHHHcCCHHHHHHHHHcC-CC
Confidence            4568999999999999998888876 6777   6665             488999999999999999999999999 99


Q ss_pred             cccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCC-------------------------------------------
Q 006236           90 VNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASAD-------------------------------------------  126 (655)
Q Consensus        90 vN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAD-------------------------------------------  126 (655)
                      ++.. +..|.||||+|+..|+   .+++++|+++|++                                           
T Consensus        71 ~~~~-~~~g~tpL~~A~~~~~---~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (282)
T 1oy3_D           71 VLVA-ERGGHTALHLACRVRA---HTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDED  146 (282)
T ss_dssp             SSCC-CTTSCCHHHHHTTTTC---HHHHHHHSSSCCSSCCCC-----------------------------------CCC
T ss_pred             CCCC-CCCCCCHHHHHHHcCC---cchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhh
Confidence            9998 9999999999999999   9999999988765                                           


Q ss_pred             ----CcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCccccc-CCCCccccccc
Q 006236          127 ----VNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEEL-VNIPVPQLSKD  183 (655)
Q Consensus       127 ----vn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~-g~tpl~~l~~~  183 (655)
                          ++..|..|.||||+|+.      .++.+++++|+++|++++..+.. |.+|+..+...
T Consensus       147 ~~~~~~~~~~~g~t~L~~A~~------~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~  202 (282)
T 1oy3_D          147 WRLQLEAENYDGHTPLHVAVI------HKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEA  202 (282)
T ss_dssp             GGGGTTCCCTTSCCHHHHHHH------TTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHT
T ss_pred             hhhcCCCcCCCCcCHHHHHHH------cCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHc
Confidence                67788899999999987      88899999999999999988754 88888655443

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.83  E-value=4.1e-21  Score=192.81  Aligned_cols=148  Identities=18%  Similarity=0.209  Sum_probs=128.9

Q ss_pred             CchHHHHHHHhCCHHHHH---HHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHc---CCHHHHHHHHHcCCCc
Q 006236           16 KSSILLELSASDDISAFK---REIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMF---GSVAVLKYVIETGKVN   89 (655)
Q Consensus        16 g~s~LL~AAa~gd~~~vk---~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~---G~~evvk~LL~~G~aD   89 (655)
                      |.|+||.||..|+.+.++   ++|.+.|+++|...         ...|..|+||||+|+..   |+.+++++||+.| ++
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~---------~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g-~~   71 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSA---------YTEGSTGKTCLMKAVLNLQDGVNACIMPLLQID-KD   71 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGG---------GSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHH-HH
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHcCCCccccc---------ccCCCCCCCHHHHHHHccccchHHHHHHHHhcC-Cc
Confidence            789999999999998544   44456899999811         00158999999999999   9999999999998 88


Q ss_pred             ccccc----------CCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCC-------------CCCccchhhhccC
Q 006236           90 VNRAC----------GSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVY-------------GNKPVDLIPVAMK  146 (655)
Q Consensus        90 vN~~~----------d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~-------------G~TPLhlAa~~~~  146 (655)
                      ++...          +..|.||||+|+..|+   .++|++|+++|++++..|..             |.||||+|+.   
T Consensus        72 ~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~---~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~---  145 (256)
T 2etb_A           72 SGNPKPLVNAQCTDEFYQGHSALHIAIEKRS---LQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAAC---  145 (256)
T ss_dssp             TTCSSCGGGCCCCSTTTTTCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHH---
T ss_pred             ccchhhhcccccccccccCCCHHHHHHHcCC---HHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHH---
Confidence            76431          3679999999999999   99999999999999999986             9999999997   


Q ss_pred             CCCcChHHHHHHHHh---CCCCCCcccccCCCCcccccc
Q 006236          147 SPLHSRKRAIELLLK---GDHTIFEEEELVNIPVPQLSK  182 (655)
Q Consensus       147 ~~~~g~~eivelLL~---~GAdin~~d~~g~tpl~~l~~  182 (655)
                         .++.+++++|++   +|++++..|.+|.+|+..+..
T Consensus       146 ---~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~  181 (256)
T 2etb_A          146 ---TKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVM  181 (256)
T ss_dssp             ---TTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHH
T ss_pred             ---cCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHH
Confidence               899999999999   999999999999999976654

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.83  E-value=3.3e-21  Score=193.15  Aligned_cols=139  Identities=18%  Similarity=0.195  Sum_probs=80.9

Q ss_pred             CCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccc
Q 006236           15 NKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRAC   94 (655)
Q Consensus        15 ~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~   94 (655)
                      .|.|+|+.|+..++.+.++.+|. +|++++..              ..|.||||+|+..|+.+++++||+.| +|+|.. 
T Consensus         4 ~g~t~L~~a~~~~~~~~~~~ll~-~g~~~~~~--------------~~~~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~-   66 (239)
T 1ycs_B            4 TGQVSLPPGKRTNLRKTGSERIA-HGMRVKFN--------------PLPLALLLDSSLEGEFDLVQRIIYEV-DDPSLP-   66 (239)
T ss_dssp             ------------------------------------------------CHHHHHHHHHHTCHHHHHHHTSTT-SSCCCC-
T ss_pred             cccccCchhhhhhhHHHHHHHhc-cCCCcccC--------------chhhHHHHHHHHcCCHHHHHHHHHcC-CCCCCc-
Confidence            35677777777766666666554 77777653              45677777777777777777777777 777777 


Q ss_pred             CCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccCC
Q 006236           95 GSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVN  174 (655)
Q Consensus        95 d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~  174 (655)
                      |..|.||||+|+..|+   .++|++|+++|+++|.+|.+|+||||+|+.      .++.+++++|+++|++++..+..+.
T Consensus        67 d~~g~t~L~~A~~~g~---~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~------~~~~~~v~~Ll~~ga~~~~~~~~~~  137 (239)
T 1ycs_B           67 NDEGITALHNAVCAGH---TEIVKFLVQFGVNVNAADSDGWTPLHCAAS------CNNVQVCKFLVESGAAVFAMTYSDM  137 (239)
T ss_dssp             CTTSCCHHHHHHHHTC---HHHHHHHHHHTCCTTCCCTTCCCHHHHHHH------TTCHHHHHHHHHTTCCTTCCCSSSC
T ss_pred             CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCccCCCCCCHHHHHHH------cCCHHHHHHHHHcCCCcceecCCCC
Confidence            7777777777777777   777777777777777777777777777776      6777777777777777777766665


Q ss_pred             -CCccc
Q 006236          175 -IPVPQ  179 (655)
Q Consensus       175 -tpl~~  179 (655)
                       +++..
T Consensus       138 ~t~l~~  143 (239)
T 1ycs_B          138 QTAADK  143 (239)
T ss_dssp             CCHHHH
T ss_pred             cchHHH
Confidence             66643

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.83  E-value=4.4e-20  Score=183.04  Aligned_cols=147  Identities=21%  Similarity=0.185  Sum_probs=126.1

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA   93 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~   93 (655)
                      ..|.|+||.|+..|+.+.++.++. .|.+.+...       .....+..|.||||+|+..|+.+++++|++.| ++++..
T Consensus        76 ~~g~t~L~~A~~~~~~~~v~~Ll~-~~~~~~~~~-------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~  146 (236)
T 1ikn_D           76 FRGNTPLHLACEQGCLASVGVLTQ-SCTTPHLHS-------ILKATNYNGHTCLHLASIHGYLGIVELLVSLG-ADVNAQ  146 (236)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHH-STTTTSSSC-------GGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHT-CCTTCC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHh-cccchhHHH-------HhhccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCC
Confidence            468899999999999998887776 776643221       11223688999999999999999999999999 999998


Q ss_pred             cCC-CCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCC--ccc
Q 006236           94 CGS-DGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIF--EEE  170 (655)
Q Consensus        94 ~d~-~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin--~~d  170 (655)
                       +. .|.||||+|+..|+   .++|++|+++|++++.+|..|.||||+|+.      .++.+++++|+++|++..  ..+
T Consensus       147 -~~~~g~tpL~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~------~~~~~~~~~Ll~~ga~~~~~~~~  216 (236)
T 1ikn_D          147 -EPCNGRTALHLAVDLQN---PDLVSLLLKCGADVNRVTYQGYSPYQLTWG------RPSTRIQQQLGQLTLENLQMLPE  216 (236)
T ss_dssp             -CTTTCCCHHHHHHHTTC---HHHHHHHHTTTCCSCCCCTTCCCGGGGCTT------SSCHHHHHHHHTTSCGGGSSCCC
T ss_pred             -CCCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCcccCCCCCHHHHHHc------cCchHHHHHHHHcchhhhhcCCc
Confidence             66 99999999999999   999999999999999999999999999986      899999999999999877  556


Q ss_pred             ccCCCCccc
Q 006236          171 ELVNIPVPQ  179 (655)
Q Consensus       171 ~~g~tpl~~  179 (655)
                      .++.++...
T Consensus       217 ~~~~~~~~~  225 (236)
T 1ikn_D          217 SEDEESYDT  225 (236)
T ss_dssp             CCTTTCCCC
T ss_pred             cchHHHHhh
Confidence            666665433

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.83  E-value=5.6e-21  Score=188.30  Aligned_cols=134  Identities=16%  Similarity=0.163  Sum_probs=111.7

Q ss_pred             CCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHc-CCCccccc
Q 006236           15 NKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIET-GKVNVNRA   93 (655)
Q Consensus        15 ~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~-G~aDvN~~   93 (655)
                      .|.|+||.||..|+.+.++.+|. .|+++|..+             ..|+||||+||..|+.+++++||+. | +++|..
T Consensus        72 ~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~-------------~~g~t~L~~A~~~~~~~~v~~Ll~~~g-~~~~~~  136 (222)
T 3ehr_A           72 SIDNPLHEAAKRGNLSWLRECLD-NRVGVNGLD-------------KAGSTALYWACHGGHKDIVEMLFTQPN-IELNQQ  136 (222)
T ss_dssp             EESCHHHHHHHHTCHHHHHHHHH-TTCCTTCCC-------------TTSCCHHHHHHHTTCHHHHHHHTTSTT-CCCCCC
T ss_pred             ccccccccccccCcHHHHHHHHh-CCCCccccC-------------CCCCCHHHHHHHcCCHHHHHHHHcCCC-CCcccc
Confidence            46799999999999999888887 899999884             8899999999999999999999999 7 999998


Q ss_pred             cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccC
Q 006236           94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELV  173 (655)
Q Consensus        94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g  173 (655)
                       +..|.||||+|+..|+   .++|++||++|++++.+|.+|.||||+|+.      .+..++++.|+..|+..++.+.++
T Consensus       137 -d~~g~tpL~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~------~~~~~~l~~l~~~~~~~~~~~~~~  206 (222)
T 3ehr_A          137 -NKLGDTALHAAAWKGY---ADIVQLLLAKGARTDLRNIEKKLAFDMATN------AACASLLKKKQGTDAVRTLSNAED  206 (222)
T ss_dssp             -CTTSCCHHHHHHHHTC---HHHHHHHHHHTCCSCCCCTTSCCHHHHCCS------HHHHHHHC----------------
T ss_pred             -CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCccccCCCCCHHHHhcc------hhHHHHHHHHhccchhhhccchhh
Confidence             9999999999999999   999999999999999999999999999986      899999999999999998766544

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.83  E-value=1.6e-20  Score=194.50  Aligned_cols=142  Identities=23%  Similarity=0.292  Sum_probs=133.8

Q ss_pred             CCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccc
Q 006236           15 NKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRAC   94 (655)
Q Consensus        15 ~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~   94 (655)
                      .+.++|++||..|+.+.++.+|.+.+.++|..+             ..|.||||+|+..|+.+++++|++.| +++|.. 
T Consensus        23 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d-------------~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~-   87 (351)
T 3utm_A           23 YKKDELLEAARSGNEEKLMALLTPLNVNCHASD-------------GRKSTPLHLAAGYNRVRIVQLLLQHG-ADVHAK-   87 (351)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSS-------------TTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCC-
T ss_pred             ccchhHHHHHHcCCHHHHHHHHHhcCCCcccCC-------------CCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCcc-
Confidence            367899999999999999999998899999885             88999999999999999999999999 999998 


Q ss_pred             CCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccCC
Q 006236           95 GSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVN  174 (655)
Q Consensus        95 d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~  174 (655)
                      +..|.||||+|+..|+   .+++++|+++|++++..|..|.||||+|+.      .++.+++++|+++|++++..+..+.
T Consensus        88 ~~~g~t~L~~A~~~g~---~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~------~~~~~~v~~Ll~~g~~~~~~~~~g~  158 (351)
T 3utm_A           88 DKGGLVPLHNACSYGH---YEVTELLLKHGACVNAMDLWQFTPLHEAAS------KNRVEVCSLLLSHGADPTLVNCHGK  158 (351)
T ss_dssp             CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTCCCHHHHHHH------TTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             CCCCCcHHHHHHHCCC---HHHHHHHHHCCCCCCCCCCCCCCHHHHHHH------cCCHHHHHHHHHcCCCCccccCCCC
Confidence            9999999999999999   999999999999999999999999999997      8999999999999999999998888


Q ss_pred             CCcccc
Q 006236          175 IPVPQL  180 (655)
Q Consensus       175 tpl~~l  180 (655)
                      +++...
T Consensus       159 ~~l~~a  164 (351)
T 3utm_A          159 SAVDMA  164 (351)
T ss_dssp             CHHHHC
T ss_pred             cchHHH
Confidence            876443

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.83  E-value=3e-20  Score=182.03  Aligned_cols=141  Identities=17%  Similarity=0.250  Sum_probs=97.3

Q ss_pred             CchHHHHHHHhCCHHHHHHHHHhcCCCCCC-CCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccc--c
Q 006236           16 KSSILLELSASDDISAFKREIEEKGFDVDE-PSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVN--R   92 (655)
Q Consensus        16 g~s~LL~AAa~gd~~~vk~LL~~~GadIn~-~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN--~   92 (655)
                      |.|+||.|+..|+.+.++.+|. .+.+++. .             |..|+||||+|+..|+.+++++|++.| ++++  .
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~~-~~~~~~~   66 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLH-SKPSLLLQK-------------DQDGRIPLHWSVSFQAHEITSFLLSKM-ENVNLDD   66 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHH-HCGGGTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHTC-TTCCGGG
T ss_pred             CccHHHHHHHhCCHHHHHHHHh-cCccccccC-------------CCCCCCHHHHHHHcCCHHHHHHHHhcc-ccccccc
Confidence            6799999999999999999987 4555443 4             366677777777777777777777765 3333  3


Q ss_pred             -ccCCCCChHHHHHHHcCCCChHHHHHHHHhCC--CCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcc
Q 006236           93 -ACGSDGFTALHCAVAGGANSSFEVVKLLLSAS--ADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEE  169 (655)
Q Consensus        93 -~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~G--ADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~  169 (655)
                       . +..|.||||+|+..|+   .+++++|+++|  ++++..|..|.||||+|+.      .++.+++++|+++|++++..
T Consensus        67 ~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~------~~~~~~~~~Ll~~g~~~~~~  136 (228)
T 2dzn_A           67 YP-DDSGWTPFHIACSVGN---LEVVKSLYDRPLKPDLNKITNQGVTCLHLAVG------KKWFEVSQFLIENGASVRIK  136 (228)
T ss_dssp             CC-CTTSCCHHHHHHHHCC---HHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHH------TTCHHHHHHHHHTTCCSCCC
T ss_pred             cC-CCCCCCHHHHHHHcCC---HHHHHHHHhCCCCcccccCCcCCCCHHHHHHH------cCCHhHHHHHHHcCCCcccc
Confidence             3 5666777777777776   67777777766  6666666677777777665      66667777777777777766


Q ss_pred             cccCCCCccccc
Q 006236          170 EELVNIPVPQLS  181 (655)
Q Consensus       170 d~~g~tpl~~l~  181 (655)
                      +..|.+|+..+.
T Consensus       137 ~~~g~t~L~~A~  148 (228)
T 2dzn_A          137 DKFNQIPLHRAA  148 (228)
T ss_dssp             CTTSCCHHHHHH
T ss_pred             CCCCCCHHHHHH
Confidence            666666664433

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.83  E-value=4.4e-20  Score=189.91  Aligned_cols=153  Identities=22%  Similarity=0.165  Sum_probs=94.4

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCc------ccc--------------cccCCccCCCCCChHHHHHHHc
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSF------WYG--------------RRIGSKKMGFEERTPIMIAAMF   73 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dl------w~g--------------~~~~~~~~d~~G~TPLh~AA~~   73 (655)
                      ..|.|+||.|+..|+.+.++.||. .|++++..+.      .+.              ...+.. .+.+|.||||+|+..
T Consensus        90 ~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~  167 (285)
T 3d9h_A           90 ADHVSPLHEACLGGHLSCVKILLK-HGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ-PESDLASPIHEAARR  167 (285)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHH-TTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS-CSCTTSCHHHHHHHH
T ss_pred             CCCCCHHHHHHHCCcHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCC-CCCCCCCHHHHHHHc
Confidence            568899999999998888777765 7888887750      000              000111 123456666666666


Q ss_pred             CCHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChH
Q 006236           74 GSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRK  153 (655)
Q Consensus        74 G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~  153 (655)
                      |+.+++++|++.| ++++.. +..|.||||+|+..|+   .+++++|++.|++++. |..|.||||+|+.      .++.
T Consensus       168 g~~~~v~~Ll~~g-~~~~~~-d~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~------~~~~  235 (285)
T 3d9h_A          168 GHVECVNSLIAYG-GNIDHK-ISHLGTPLYLACENQQ---RACVKKLLESGADVNQ-GKGQDSPLHAVVR------TASE  235 (285)
T ss_dssp             TCHHHHHHHHHTT-CCTTCC-BTTTBCHHHHHHHTTC---HHHHHHHHHTTCCTTC-CBTTBCHHHHHHH------TTCH
T ss_pred             CCHHHHHHHHHCC-CCCCCc-CCCCCCHHHHHHHcCc---HHHHHHHHHCCCCCCC-CCCCCCHHHHHHH------cCCH
Confidence            6666666666666 666655 5566666666666666   6666666666666663 5566666666655      5566


Q ss_pred             HHHHHHHhCCCCCCcccccCCCCcccc
Q 006236          154 RAIELLLKGDHTIFEEEELVNIPVPQL  180 (655)
Q Consensus       154 eivelLL~~GAdin~~d~~g~tpl~~l  180 (655)
                      +++++|+++|++++.+|.+|.+|+..+
T Consensus       236 ~~v~~Ll~~gad~~~~d~~g~t~l~~A  262 (285)
T 3d9h_A          236 ELACLLMDFGADTQAKNAEGKRPVELV  262 (285)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCGGGGS
T ss_pred             HHHHHHHHCCCCCCCcCCCCCCHHHHh
Confidence            666666666666666666666665444

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.83  E-value=3.2e-20  Score=183.23  Aligned_cols=143  Identities=30%  Similarity=0.379  Sum_probs=125.8

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA   93 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~   93 (655)
                      ..|.|+|+.|+..|+.+.++.+++ .|++++..+             ..|+||||+|+..|+.+++++|++.| ++++..
T Consensus         9 ~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~-------------~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~   73 (237)
T 3b7b_A            9 QNKRSPLHAAAEAGHVDICHMLVQ-AGANIDTCS-------------EDQRTPLMEAAENNHLEAVKYLIKAG-ALVDPK   73 (237)
T ss_dssp             CCSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCC-------------TTCCCHHHHHHHTTCHHHHHHHHTTT-CCCCCC
T ss_pred             CCCCCHHHHHHHcCcHHHHHHHHH-cCCCcCccC-------------CCCCCHHHHHHHhCCHHHHHHHHhCC-CCCCCC
Confidence            457899999999999998887776 899999874             78899999999999999999999998 899888


Q ss_pred             cCCCCChHHHHHHHcCCCChHHHHHHHHhCC-CCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCccccc
Q 006236           94 CGSDGFTALHCAVAGGANSSFEVVKLLLSAS-ADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEEL  172 (655)
Q Consensus        94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~G-ADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~  172 (655)
                       +..|.||||+|+..|+   .+++++|++.| ++++..|..|.||||+|+.      .++.+++++|+++|++++..+..
T Consensus        74 -~~~g~t~L~~A~~~~~---~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~------~~~~~~~~~Ll~~g~~~~~~~~~  143 (237)
T 3b7b_A           74 -DAEGSTCLHLAAKKGH---YEVVQYLLSNGQMDVNCQDDGGWTPMIWATE------YKHVDLVKLLLSKGSDINIRDNE  143 (237)
T ss_dssp             -CTTSCCHHHHHHHTTC---HHHHHHHHTTTCCCTTCCCTTSCCHHHHHHH------TTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             -CCCCCcHHHHHHHcCC---HHHHHHHHhCCCCCcccCCCCCCCHHHHHHH------cCCHHHHHHHHHCCCCCCccCCC
Confidence             8889999999999998   99999999988 8899899999999999887      78889999999999999988888


Q ss_pred             CCCCccccc
Q 006236          173 VNIPVPQLS  181 (655)
Q Consensus       173 g~tpl~~l~  181 (655)
                      |.+++..+.
T Consensus       144 g~t~L~~A~  152 (237)
T 3b7b_A          144 ENICLHWAA  152 (237)
T ss_dssp             SCCHHHHHH
T ss_pred             CCCHHHHHH
Confidence            888875443

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.83  E-value=9.7e-21  Score=189.69  Aligned_cols=139  Identities=24%  Similarity=0.261  Sum_probs=124.2

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA   93 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~   93 (655)
                      ..+.++||.|+..|+.+.++.+|. .|+++|..+             ..|+||||+||..|+.+++++||++| +|+|..
T Consensus        35 ~~~~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~d-------------~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~   99 (239)
T 1ycs_B           35 PLPLALLLDSSLEGEFDLVQRIIY-EVDDPSLPN-------------DEGITALHNAVCAGHTEIVKFLVQFG-VNVNAA   99 (239)
T ss_dssp             --CHHHHHHHHHHTCHHHHHHHTS-TTSSCCCCC-------------TTSCCHHHHHHHHTCHHHHHHHHHHT-CCTTCC
T ss_pred             chhhHHHHHHHHcCCHHHHHHHHH-cCCCCCCcC-------------CCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCcc
Confidence            346799999999999998888875 899999885             88999999999999999999999999 999999


Q ss_pred             cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCC-CccchhhhccCCCCcChHHHHHHHHhCCCCCCccccc
Q 006236           94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGN-KPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEEL  172 (655)
Q Consensus        94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~-TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~  172 (655)
                       |..|+||||+|+..|+   .++|++|+++|++++.+|..|. ||||+|..    ...++.+++++|+++|++++..+..
T Consensus       100 -d~~g~tpL~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~----~~~g~~~~~~~Ll~~~a~~~~~~~~  171 (239)
T 1ycs_B          100 -DSDGWTPLHCAASCNN---VQVCKFLVESGAAVFAMTYSDMQTAADKCEE----MEEGYTQCSQFLYGVQEKMGIMNKG  171 (239)
T ss_dssp             -CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCSSSCCCHHHHCCS----SSTTCCCHHHHHHHHHHHTTTTGGG
T ss_pred             -CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCcceecCCCCcchHHHHHH----hhhccHHHHHHHHHhhhcccccccc
Confidence             9999999999999999   9999999999999999998887 99999832    3478999999999999999987655


Q ss_pred             CCC
Q 006236          173 VNI  175 (655)
Q Consensus       173 g~t  175 (655)
                      +.+
T Consensus       172 ~~~  174 (239)
T 1ycs_B          172 VIY  174 (239)
T ss_dssp             EEE
T ss_pred             eEE
Confidence            433

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.83  E-value=2.3e-20  Score=192.06  Aligned_cols=144  Identities=19%  Similarity=0.247  Sum_probs=128.8

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA   93 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~   93 (655)
                      ..|.|+||.||..|+.+.++.+|. .|+++|..+             .+|+||||+|+..|+.+++++|++.| ++++..
T Consensus        57 ~~g~t~L~~Aa~~g~~~~v~~Ll~-~g~~~~~~~-------------~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~  121 (285)
T 3d9h_A           57 VSDWSPMHEAAIHGHQLSLRNLIS-QGWAVNIIT-------------ADHVSPLHEACLGGHLSCVKILLKHG-AQVNGV  121 (285)
T ss_dssp             CCSCCHHHHHHHTTCHHHHHHHHH-TTCCSCEEC-------------TTCCCHHHHHHHTTCHHHHHHHHHTT-CCSSCC
T ss_pred             ccCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcC-------------CCCCCHHHHHHHCCcHHHHHHHHHCC-CCCCCC
Confidence            568899999999999999888886 899999874             88999999999999999999999999 999988


Q ss_pred             cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccC
Q 006236           94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELV  173 (655)
Q Consensus        94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g  173 (655)
                       +..|.||||+|+..|+   .+++++|++.|++++..+ +|.||||+|+.      .++.+++++|+++|++++..|..|
T Consensus       122 -~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~------~g~~~~v~~Ll~~g~~~~~~d~~g  190 (285)
T 3d9h_A          122 -TADWHTPLFNACVSGS---WDCVNLLLQHGASVQPES-DLASPIHEAAR------RGHVECVNSLIAYGGNIDHKISHL  190 (285)
T ss_dssp             -CTTCCCHHHHHHHHTC---HHHHHHHHHTTCCSSCSC-TTSCHHHHHHH------HTCHHHHHHHHHTTCCTTCCBTTT
T ss_pred             -CCCCCCHHHHHHHcCH---HHHHHHHHHCCCCCCCCC-CCCCHHHHHHH------cCCHHHHHHHHHCCCCCCCcCCCC
Confidence             8999999999999999   999999999999998644 59999999987      889999999999999999999999


Q ss_pred             CCCccccccc
Q 006236          174 NIPVPQLSKD  183 (655)
Q Consensus       174 ~tpl~~l~~~  183 (655)
                      .+++..+...
T Consensus       191 ~t~L~~A~~~  200 (285)
T 3d9h_A          191 GTPLYLACEN  200 (285)
T ss_dssp             BCHHHHHHHT
T ss_pred             CCHHHHHHHc
Confidence            9988655443

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.83  E-value=3.6e-20  Score=182.73  Aligned_cols=146  Identities=17%  Similarity=0.208  Sum_probs=122.8

Q ss_pred             ccCCchHHHHHHHhCCHHHHHHHHH---hcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCc
Q 006236           13 LYNKSSILLELSASDDISAFKREIE---EKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVN   89 (655)
Q Consensus        13 ~~~g~s~LL~AAa~gd~~~vk~LL~---~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aD   89 (655)
                      +.+|.|+||.|+..|+.+.++.++.   +.|.++|..+             ..|.||||+|+..|+.+++++|++.| ++
T Consensus         6 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~-------------~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~   71 (241)
T 1k1a_A            6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYN-------------NLRQTPLHLAVITTLPSVVRLLVTAG-AS   71 (241)
T ss_dssp             -CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCC-------------TTSCCHHHHHHHTTCHHHHHHHHHTT-CC
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccc-------------ccCCCHHHHHHHcCCHHHHHHHHHcC-CC
Confidence            3568999999999999999988886   5899999885             77888999998888888888888888 88


Q ss_pred             cccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCC----CCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCC
Q 006236           90 VNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASA----DVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHT  165 (655)
Q Consensus        90 vN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GA----Dvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAd  165 (655)
                      ++.. +..|.||||+|+..|+   .+++++|++.++    +++..|..|.||||+|+.      .++.+++++|+++|++
T Consensus        72 ~~~~-~~~g~t~l~~A~~~~~---~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~------~~~~~~~~~Ll~~g~~  141 (241)
T 1k1a_A           72 PMAL-DRHGQTAAHLACEHRS---PTCLRALLDSAAPGTLDLEARNYDGLTALHVAVN------TECQETVQLLLERGAD  141 (241)
T ss_dssp             TTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHH------HTCHHHHHHHHHTTCC
T ss_pred             cccc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCccccccccCcCCCcHHHHHHH------cCCHHHHHHHHHcCCC
Confidence            8887 8888888888888888   888888888876    788888888888888886      7888888888888888


Q ss_pred             CCccc-ccCCCCcccccc
Q 006236          166 IFEEE-ELVNIPVPQLSK  182 (655)
Q Consensus       166 in~~d-~~g~tpl~~l~~  182 (655)
                      ++..+ ..|.+|+..+..
T Consensus       142 ~~~~~~~~g~t~L~~A~~  159 (241)
T 1k1a_A          142 IDAVDIKSGRSPLIHAVE  159 (241)
T ss_dssp             TTCCCTTTCCCHHHHHHH
T ss_pred             cccccccCCCcHHHHHHH
Confidence            88877 677787755443

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.83  E-value=4.5e-20  Score=171.36  Aligned_cols=121  Identities=25%  Similarity=0.304  Sum_probs=114.0

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA   93 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~   93 (655)
                      ..|.|+||.|+..|+.+.++.++. .|++++..+             ..|+||||+|+..|+.+++++|+++| +++|..
T Consensus        32 ~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~-------------~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~   96 (153)
T 1awc_B           32 WLGTSPLHLAAQYGHFSTTEVLLR-AGVSRDART-------------KVDRTPLHMAASEGHANIVEVLLKHG-ADVNAK   96 (153)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHT-TTCCTTCCC-------------TTCCCHHHHHHHHTCHHHHHHHHTTT-CCTTCC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCCC-------------CCCCCHHHHHHHcChHHHHHHHHHcC-CCCCCC
Confidence            468899999999999998887775 899999874             88999999999999999999999999 999998


Q ss_pred             cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHH
Q 006236           94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELL  159 (655)
Q Consensus        94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelL  159 (655)
                       +..|.||||+|+..|+   .+++++|+++|++++.+|..|.||||+|+.      .++.+++++|
T Consensus        97 -~~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~------~~~~~i~~~L  152 (153)
T 1awc_B           97 -DMLKMTALHWATEHNH---QEVVELLIKYGADVHTQSKFCKTAFDISID------NGNEDLAEIL  152 (153)
T ss_dssp             -CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHH------TTCHHHHHHH
T ss_pred             -CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCccccCCCCCCHHHHHHH------cCCHHHHHHh
Confidence             9999999999999999   999999999999999999999999999997      8999999987

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.83  E-value=2.3e-20  Score=201.72  Aligned_cols=156  Identities=23%  Similarity=0.291  Sum_probs=117.0

Q ss_pred             CCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCC--------------------cccccccCCccCCCCCChHHHHHHHcC
Q 006236           15 NKSSILLELSASDDISAFKREIEEKGFDVDEPS--------------------FWYGRRIGSKKMGFEERTPIMIAAMFG   74 (655)
Q Consensus        15 ~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~d--------------------lw~g~~~~~~~~d~~G~TPLh~AA~~G   74 (655)
                      .|.++|+.|+..++.+.++.++. .|+++|..+                    ++.....+.+..+..|.||||+|+..|
T Consensus       211 ~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~  289 (437)
T 1n11_A          211 NGYTPLHIAAKQNQVEVARSLLQ-YGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEG  289 (437)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcC
Confidence            45566666666666665555554 566665543                    011111222333578888888888888


Q ss_pred             CHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHH
Q 006236           75 SVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKR  154 (655)
Q Consensus        75 ~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~e  154 (655)
                      +.+++++|+++| +++|.. +..|.||||+|+..|+   .++|++|+++|+++|.+|..|.||||+|+.      .++.+
T Consensus       290 ~~~~~~~Ll~~g-~~~~~~-~~~g~t~L~~A~~~g~---~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~------~g~~~  358 (437)
T 1n11_A          290 HVPVADVLIKHG-VMVDAT-TRMGYTPLHVASHYGN---IKLVKFLLQHQADVNAKTKLGYSPLHQAAQ------QGHTD  358 (437)
T ss_dssp             CHHHHHHHHHHT-CCTTCC-CSSCCCHHHHHHHSSC---SHHHHHHHHTTCCTTCCCTTSCCHHHHHHH------TTCHH
T ss_pred             CHHHHHHHHhCC-ccCCCC-CCCCCCHHHHHHHcCc---HHHHHHHHhcCCCCCCCCCCCCCHHHHHHH------CChHH
Confidence            888888888888 888887 8888888888888888   888888888888888888888888888887      78888


Q ss_pred             HHHHHHhCCCCCCcccccCCCCcccccc
Q 006236          155 AIELLLKGDHTIFEEEELVNIPVPQLSK  182 (655)
Q Consensus       155 ivelLL~~GAdin~~d~~g~tpl~~l~~  182 (655)
                      ++++|+++|++++.+|.+|.+|+..+..
T Consensus       359 iv~~Ll~~ga~~~~~~~~g~t~l~~A~~  386 (437)
T 1n11_A          359 IVTLLLKNGASPNEVSSDGTTPLAIAKR  386 (437)
T ss_dssp             HHHHHHHTTCCSCCCCSSSCCHHHHHHH
T ss_pred             HHHHHHHCcCCCCCCCCCCCCHHHHHHH
Confidence            8888888888888888888888765543

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.82  E-value=2.5e-20  Score=175.03  Aligned_cols=129  Identities=21%  Similarity=0.242  Sum_probs=120.4

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA   93 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~   93 (655)
                      ..|.|+||.|+..|+.+.++.+|. .|++++..+             ..|.||||+|+..|+.+++++|++.| ++++..
T Consensus        34 ~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~-------------~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~   98 (167)
T 3v31_A           34 EEGFTPLMWAAAHGQIAVVEFLLQ-NGADPQLLG-------------KGRESALSLACSKGYTDIVKMLLDCG-VDVNEY   98 (167)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCC-------------TTCCCHHHHHHHHTCHHHHHHHHHHT-CCTTCC
T ss_pred             CCCCCHHHHHHHCCCHHHHHHHHH-cCCCCCCcC-------------CCCCcHHHHHHHcCCHHHHHHHHHCC-CCCCcC
Confidence            468899999999999988887776 799999874             88999999999999999999999999 999998


Q ss_pred             cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCC
Q 006236           94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIF  167 (655)
Q Consensus        94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin  167 (655)
                       +..|.||||+|+..|+   .+++++|+++|++++.+|..|.||||+|+.      .++.+++++|+++++++.
T Consensus        99 -~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~------~~~~~~~~~L~~~~~~~~  162 (167)
T 3v31_A           99 -DWNGGTPLLYAVHGNH---VKCVKMLLESGADPTIETDSGYNSMDLAVA------LGYRSVQQVIESHLLKLL  162 (167)
T ss_dssp             -CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHH------HTCHHHHHHHHHHHHHHC
T ss_pred             -CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCCHHHHHHH------cCcHHHHHHHHHHHHHHH
Confidence             9999999999999999   999999999999999999999999999997      899999999999877654

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.82  E-value=3.8e-20  Score=165.78  Aligned_cols=110  Identities=25%  Similarity=0.309  Sum_probs=101.3

Q ss_pred             CCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccc
Q 006236           15 NKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRAC   94 (655)
Q Consensus        15 ~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~   94 (655)
                      .+.++|+.|+..|+.+.++.+|. .|+++|..+             ..|+||||+|+..|+.+++++|++.| +++|.. 
T Consensus         6 ~~~~~l~~A~~~~~~~~v~~ll~-~~~~~~~~~-------------~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~-   69 (123)
T 3aaa_C            6 MCDKEFMWALKNGDLDEVKDYVA-KGEDVNRTL-------------EGGRKPLHYAADCGQLEILEFLLLKG-ADINAP-   69 (123)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHH-TTCCTTSCC-------------TTSSCHHHHHHHTTCHHHHHHHHTTT-CCTTCC-
T ss_pred             ccchHHHHHHHcCCHHHHHHHHH-cCCCcCccC-------------CCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCcC-
Confidence            46789999999999999988876 889998874             88999999999999999999999999 999998 


Q ss_pred             CCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhh
Q 006236           95 GSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPV  143 (655)
Q Consensus        95 d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~  143 (655)
                      |..|+||||+|+..|+   .+++++|+++|++++.+|.+|.||||+|..
T Consensus        70 d~~g~tpL~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~  115 (123)
T 3aaa_C           70 DKHHITPLLSAVYEGH---VSCVKLLLSKGADKTVKGPDGLTAFEATDN  115 (123)
T ss_dssp             CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHCCC
T ss_pred             CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCCHHHHhCC
Confidence            9999999999999999   999999999999999999999999999853

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.82  E-value=4.8e-20  Score=177.30  Aligned_cols=125  Identities=26%  Similarity=0.386  Sum_probs=117.3

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA   93 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~   93 (655)
                      ..|.|+||.|+..++.+.++.++. .|++++..+             ..|.||||+|+..|+.+++++|+++| ++++..
T Consensus        66 ~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~-------------~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~  130 (192)
T 2rfm_A           66 IEGSTALIWAVKNNRLGIAEKLLS-KGSNVNTKD-------------FSGKTPLMWSIIFGYSEMSYFLLEHG-ANVNDR  130 (192)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHH-HTCCTTCCC-------------TTSCCHHHHHHHHTCHHHHHHHHHTT-CCSSCC
T ss_pred             ccCccHHHHHHHcCCHHHHHHHHH-CCCCCCCCC-------------CCCCcHHHHHHHcCCHHHHHHHHHCC-CCCCCC
Confidence            468899999999999998887776 799999884             88999999999999999999999999 999998


Q ss_pred             cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCC
Q 006236           94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGD  163 (655)
Q Consensus        94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~G  163 (655)
                       +..|.||||+|+..|+   .+++++|+++|++++.+|..|.||||+|+.      .++.+++++|+++|
T Consensus       131 -~~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~------~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          131 -NLEGETPLIVASKYGR---SEIVKKLLELGADISARDLTGLTAEASARI------FGRQEVIKIFTEVR  190 (192)
T ss_dssp             -CTTCCCHHHHHHHHTC---HHHHHHHHHTTCCTTCBCTTSCBHHHHHHH------TTCHHHHHHHHHHH
T ss_pred             -CCCCCCHHHHHHHcCC---HHHHHHHHHCCCCCCCcCCCCCCHHHHHHH------hCcHHHHHHHHhcc
Confidence             9999999999999999   999999999999999999999999999997      89999999999864

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.82  E-value=6.5e-20  Score=189.98  Aligned_cols=99  Identities=27%  Similarity=0.302  Sum_probs=78.1

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA   93 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~   93 (655)
                      ..|.|+||.||..|+.+.++.||. .|+++|..+             ..|+||||+|+..|+.+++++|+++| ++++..
T Consensus        56 ~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~-------------~~g~t~L~~A~~~g~~~iv~~Ll~~g-~~~~~~  120 (351)
T 3utm_A           56 GRKSTPLHLAAGYNRVRIVQLLLQ-HGADVHAKD-------------KGGLVPLHNACSYGHYEVTELLLKHG-ACVNAM  120 (351)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCC-------------TTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCccC-------------CCCCcHHHHHHHCCCHHHHHHHHHCC-CCCCCC
Confidence            457899999999999988887776 899999885             67788888888888888888888887 888777


Q ss_pred             cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccC
Q 006236           94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVD  131 (655)
Q Consensus        94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D  131 (655)
                       +..|.||||+|+..|+   .+++++|+++|++++..+
T Consensus       121 -~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~  154 (351)
T 3utm_A          121 -DLWQFTPLHEAASKNR---VEVCSLLLSHGADPTLVN  154 (351)
T ss_dssp             -CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCC
T ss_pred             -CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCcccc
Confidence             7777888888887777   777777777666665544

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.82  E-value=5.5e-20  Score=192.23  Aligned_cols=140  Identities=19%  Similarity=0.234  Sum_probs=87.5

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCc------------------------ccccccCCccCCCCCChHHHH
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSF------------------------WYGRRIGSKKMGFEERTPIMI   69 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dl------------------------w~g~~~~~~~~d~~G~TPLh~   69 (655)
                      ..|.|+||.|+..|+.+.++.||.+.|+++|..+.                        +.....+.+..|.+|+||||+
T Consensus       166 ~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~  245 (337)
T 4g8k_A          166 KGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLIL  245 (337)
T ss_dssp             TCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHH
T ss_pred             CCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHH
Confidence            46789999999999999999999888999998750                        001112223345556666666


Q ss_pred             HHHcCCHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCC
Q 006236           70 AAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPL  149 (655)
Q Consensus        70 AA~~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~  149 (655)
                      |+..|+.+++++|++.+.+++|.+ |.+|+||||+|+..|+   .++|++||++|||+|.+     +|||+|+.      
T Consensus       246 a~~~~~~~~v~~Ll~~~~~~vn~~-d~~G~TpL~~A~~~g~---~~iv~~Ll~~GAd~n~~-----~~L~~A~~------  310 (337)
T 4g8k_A          246 AVEKKHLGLVQRLLEQEHIEINDT-DSDGKTALLLAVELKL---KKIAELLCKRGASTDCG-----DLVMTARR------  310 (337)
T ss_dssp             HHHTTCHHHHHHHHTSTTCCTTCB-CTTSCBHHHHHHHTTC---HHHHHHHHTTSCSSTTC-----CHHHHHHH------
T ss_pred             HHHhhhhHHHHHHHHhcCCcccCc-CCCCCCHHHHHHHcCC---HHHHHHHHHCCCCCCCC-----CHHHHHHH------
Confidence            666666666666665433566655 5666666666666665   66666666666655543     35666654      


Q ss_pred             cChHHHHHHHHhCCCCCCc
Q 006236          150 HSRKRAIELLLKGDHTIFE  168 (655)
Q Consensus       150 ~g~~eivelLL~~GAdin~  168 (655)
                      .++.+||++||++||++|+
T Consensus       311 ~~~~~iv~~Ll~~GA~~d~  329 (337)
T 4g8k_A          311 NYDHSLVKVLLSHGAKEDF  329 (337)
T ss_dssp             TTCHHHHHHHHHTTCCC--
T ss_pred             cCCHHHHHHHHHCcCCCCC
Confidence            5556666666666666654

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.82  E-value=8e-21  Score=190.79  Aligned_cols=156  Identities=14%  Similarity=0.090  Sum_probs=126.7

Q ss_pred             cCCchHHHHHH---HhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcc
Q 006236           14 YNKSSILLELS---ASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNV   90 (655)
Q Consensus        14 ~~g~s~LL~AA---a~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDv   90 (655)
                      ..|.|+||.|+   ..|+.+.++.||. .|++++....+  .+......|..|+||||+|+..|+.++|++||++| +++
T Consensus        44 ~~g~t~L~~A~~~~~~g~~~~v~~Ll~-~g~~~~~~~~~--~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~  119 (260)
T 3jxi_A           44 STGKTCLPKALLNLSAGRNDTIPILLD-IAEKTGNMREF--INSPFRDVYYRGQTALHIAIERRCKHYVELLVEKG-ADV  119 (260)
T ss_dssp             TTCCCHHHHHHTSCBTTBCTHHHHHHH-HHHHTTCHHHH--HTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTT-CCT
T ss_pred             CCCCcHHHHHHHHhhcCCHHHHHHHHH-hcccccchHhh--hcccccccccCCCCHHHHHHHcCCHHHHHHHHhCC-CCc
Confidence            44889999998   5677777777765 66553321100  01112223568999999999999999999999999 999


Q ss_pred             ccccC--------------CCCChHHHHHHHcCCCChHHHHHHHHh---CCCCCcccCCCCCCccchhhhccCCCCcCh-
Q 006236           91 NRACG--------------SDGFTALHCAVAGGANSSFEVVKLLLS---ASADVNCVDVYGNKPVDLIPVAMKSPLHSR-  152 (655)
Q Consensus        91 N~~~d--------------~~G~TpLH~Aa~~G~~~~~eiVklLL~---~GADvn~~D~~G~TPLhlAa~~~~~~~~g~-  152 (655)
                      |.. +              ..|.||||+|+..|+   .++|++|++   .|++++.+|..|+||||+|+.      .++ 
T Consensus       120 ~~~-~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~---~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~------~~~~  189 (260)
T 3jxi_A          120 HAQ-ARGRFFQPKDEGGYFYFGELPLSLAACTNQ---PHIVHYLTENGHKQADLRRQDSRGNTVLHALVA------IADN  189 (260)
T ss_dssp             TCC-CEECCCSSSCCCCSCCSCSSHHHHHHHTTC---HHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHH------HCCS
T ss_pred             Ccc-ccccccCcccccccccCCCCHHHHHHHcCC---HHHHHHHHhccccCCCCcccCCCCCcHHHHHHH------hccC
Confidence            988 6              689999999999999   999999999   999999999999999999986      333 


Q ss_pred             --------HHHHHHHHhCCCCC-------CcccccCCCCccccccc
Q 006236          153 --------KRAIELLLKGDHTI-------FEEEELVNIPVPQLSKD  183 (655)
Q Consensus       153 --------~eivelLL~~GAdi-------n~~d~~g~tpl~~l~~~  183 (655)
                              .+++++|+++|+++       +..|..|.+|+..+...
T Consensus       190 ~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~  235 (260)
T 3jxi_A          190 TRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKT  235 (260)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHT
T ss_pred             chhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHc
Confidence                    68999999999999       67899999998665544

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.82  E-value=5.2e-20  Score=167.74  Aligned_cols=111  Identities=24%  Similarity=0.317  Sum_probs=106.4

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccc
Q 006236           60 GFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVD  139 (655)
Q Consensus        60 d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLh  139 (655)
                      |.+|+||||+|+..|+.+++++|++.| ++++.. +..|.||||+|+..|+   .+++++|+++|++++.+|..|.||||
T Consensus         7 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~L~   81 (137)
T 3c5r_A            7 NHRGETLLHIASIKGDIPSVEYLLQNG-SDPNVK-DHAGWTPLHEACNHGH---LKVVELLLQHKALVNTTGYQNDSPLH   81 (137)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHHTT-CCSCCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCGGGCCHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCcC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCcccCcCCCCCCHHH
Confidence            689999999999999999999999999 999998 9999999999999999   99999999999999999999999999


Q ss_pred             hhhhccCCCCcChHHHHHHHHhCCCCCCcccccCCCCccccc
Q 006236          140 LIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLS  181 (655)
Q Consensus       140 lAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~tpl~~l~  181 (655)
                      +|+.      .++.+++++|+++|++++.+|..|.+|+..+.
T Consensus        82 ~A~~------~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~  117 (137)
T 3c5r_A           82 DAAK------NGHVDIVKLLLSYGASRNAVNIFGLRPVDYTD  117 (137)
T ss_dssp             HHHH------TTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCC
T ss_pred             HHHH------cCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHh
Confidence            9997      89999999999999999999999999986654

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.82  E-value=5.8e-20  Score=184.43  Aligned_cols=143  Identities=20%  Similarity=0.280  Sum_probs=130.5

Q ss_pred             CCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccc
Q 006236           15 NKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRAC   94 (655)
Q Consensus        15 ~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~   94 (655)
                      +|.++|+.|+..|+.+.++.+|+ .|.++|...            +..|+||||+|+..|+.+++++|++.| ++++.. 
T Consensus         4 ~g~~~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~------------~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~-   68 (285)
T 1wdy_A            4 EDNHLLIKAVQNEDVDLVQQLLE-GGANVNFQE------------EEGGWTPLHNAVQMSREDIVELLLRHG-ADPVLR-   68 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHH-TTCCTTCCC------------TTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCC-
T ss_pred             ccchHHHHHHHcCCHHHHHHHHH-cCCCccccc------------CCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCccc-
Confidence            46789999999999999888886 899998874            578999999999999999999999999 999998 


Q ss_pred             CCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcc-----
Q 006236           95 GSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEE-----  169 (655)
Q Consensus        95 d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~-----  169 (655)
                      +..|.||||+|+..|+   .+++++|+++|++++..|..|.||||+|+.      .++.+++++|+++|++++..     
T Consensus        69 ~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~------~~~~~~~~~Ll~~g~~~~~~~~~~~  139 (285)
T 1wdy_A           69 KKNGATPFLLAAIAGS---VKLLKLFLSKGADVNECDFYGFTAFMEAAV------YGKVKALKFLYKRGANVNLRRKTKE  139 (285)
T ss_dssp             CTTCCCHHHHHHHHTC---HHHHHHHHHTTCCTTCBCTTCCBHHHHHHH------TTCHHHHHHHHHTTCCTTCCCCCCH
T ss_pred             CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCccCcccCCHHHHHHH------hCCHHHHHHHHHhCCCcccccccHH
Confidence            9999999999999999   999999999999999999999999999997      89999999999999999986     


Q ss_pred             -----cccCCCCccccc
Q 006236          170 -----EELVNIPVPQLS  181 (655)
Q Consensus       170 -----d~~g~tpl~~l~  181 (655)
                           +..|.+++..+.
T Consensus       140 ~~~~~~~~g~t~L~~A~  156 (285)
T 1wdy_A          140 DQERLRKGGATALMDAA  156 (285)
T ss_dssp             HHHHTTCCCCCHHHHHH
T ss_pred             HHHhhccCCCcHHHHHH
Confidence                 566777764443

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.82  E-value=7.4e-20  Score=169.57  Aligned_cols=122  Identities=21%  Similarity=0.264  Sum_probs=113.8

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA   93 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~   93 (655)
                      ..|.|+||. |..|+.+.++.+++ .|+++|..+             ..|.||||+|+..|+.+++++|++.| ++++..
T Consensus        34 ~~g~t~L~~-~~~~~~~~v~~Ll~-~g~~~~~~~-------------~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~   97 (156)
T 1bd8_A           34 RFGKTALQV-MMFGSTAIALELLK-QGASPNVQD-------------TSGTSPVHDAARTGFLDTLKVLVEHG-ADVNVP   97 (156)
T ss_dssp             TTSCCHHHH-SCTTCHHHHHHHHH-TTCCTTCCC-------------TTSCCHHHHHHHTTCHHHHHHHHHTT-CCSCCC
T ss_pred             CCCCcHHHH-HHcCCHHHHHHHHH-CCCCCCCcC-------------CCCCCHHHHHHHcCcHHHHHHHHHcC-CCCCCc
Confidence            468899999 88898888877775 899999884             88999999999999999999999999 999998


Q ss_pred             cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhC
Q 006236           94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKG  162 (655)
Q Consensus        94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~  162 (655)
                       +..|.||||+|+..|+   .+++++|++. ++++.+|.+|.||||+|+.      .++.+++++|+++
T Consensus        98 -~~~g~t~L~~A~~~~~---~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~------~~~~~~v~~Ll~~  155 (156)
T 1bd8_A           98 -DGTGALPIHLAVQEGH---TAVVSFLAAE-SDLHRRDARGLTPLELALQ------RGAQDLVDILQGH  155 (156)
T ss_dssp             -CTTSCCHHHHHHHHTC---HHHHHHHHTT-SCTTCCCTTSCCHHHHHHH------SCCHHHHHHHHTT
T ss_pred             -CCCCCcHHHHHHHhCh---HHHHHHHHhc-cCCCCcCCCCCCHHHHHHH------cCcHHHHHHHHhh
Confidence             9999999999999999   9999999999 9999999999999999997      8999999999974

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.81  E-value=3e-20  Score=196.27  Aligned_cols=138  Identities=16%  Similarity=0.160  Sum_probs=90.4

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA   93 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~   93 (655)
                      ..|.|+||.||..|+.+.++.||+ .|+++|..+             ..|.||||+||..|+.++|++||+.| ++++. 
T Consensus        18 ~~g~t~L~~Aa~~g~~~~v~~Ll~-~g~~~~~~d-------------~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~-   81 (364)
T 3ljn_A           18 DENMEKIHVAARKGQTDEVRRLIE-TGVSPTIQN-------------RFGCTALHLACKFGCVDTAKYLASVG-EVHSL-   81 (364)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCCC-------------TTCCCHHHHHHHHCCHHHHHHHHHHC-CCCCC-
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHH-cCCCccccC-------------CCCCcHHHHHHHcCCHHHHHHHHHCC-CCccc-
Confidence            457899999999999999888886 799998875             67777777777777777777777777 65543 


Q ss_pred             cCCCCChHHHHHHHcCCCChHHHHHHHHhC----CCCCcc-----------------cCCCCCCccchhhhccCCCCcC-
Q 006236           94 CGSDGFTALHCAVAGGANSSFEVVKLLLSA----SADVNC-----------------VDVYGNKPVDLIPVAMKSPLHS-  151 (655)
Q Consensus        94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~----GADvn~-----------------~D~~G~TPLhlAa~~~~~~~~g-  151 (655)
                        .+|.||||+|+..|+   .++|++|++.    |++++.                 .|..|.||||+|+.      .+ 
T Consensus        82 --~~g~t~L~~A~~~g~---~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~------~g~  150 (364)
T 3ljn_A           82 --WHGQKPIHLAVMANK---TDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVG------LGP  150 (364)
T ss_dssp             --BTTBCHHHHHHHTTC---HHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHH------SCG
T ss_pred             --cCCCCHHHHHHHcCC---HHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHH------cCC
Confidence              345555555555555   5555555555    454444                 55555555555554      44 


Q ss_pred             -hHHHHHHHHhCCCCCCcccccCCCCcc
Q 006236          152 -RKRAIELLLKGDHTIFEEEELVNIPVP  178 (655)
Q Consensus       152 -~~eivelLL~~GAdin~~d~~g~tpl~  178 (655)
                       +.+++++|+++|++++..|..|.+++.
T Consensus       151 ~~~~~v~~Ll~~ga~~~~~d~~g~t~L~  178 (364)
T 3ljn_A          151 EYLEMIKILVQLGASPTAKDKADETPLM  178 (364)
T ss_dssp             GGHHHHHHHHHHTCCTTCCCTTSCCHHH
T ss_pred             chHHHHHHHHHcCCCCcccCCCCCCHHH
Confidence             555555555555555555555555553

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.81  E-value=2.7e-20  Score=196.61  Aligned_cols=158  Identities=12%  Similarity=0.066  Sum_probs=132.0

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCC----cccccc-----------------------------------c
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPS----FWYGRR-----------------------------------I   54 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~d----lw~g~~-----------------------------------~   54 (655)
                      ..|.|+||+|+..|+.+.++.||. .|++++..+    +.+...                                   +
T Consensus        51 ~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~  129 (364)
T 3ljn_A           51 RFGCTALHLACKFGCVDTAKYLAS-VGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEI  129 (364)
T ss_dssp             TTCCCHHHHHHHHCCHHHHHHHHH-HCCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEE
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHH-CCCCccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhh
Confidence            457788888888887777766665 677776633    111100                                   1


Q ss_pred             CCccCCCCCChHHHHHHHcC--CHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCC-----C
Q 006236           55 GSKKMGFEERTPIMIAAMFG--SVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASAD-----V  127 (655)
Q Consensus        55 ~~~~~d~~G~TPLh~AA~~G--~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAD-----v  127 (655)
                      .....|..|.||||+|+..|  +.+++++||+.| +|+|.. +..|.||||+|+..|+   .++|++|+++|++     +
T Consensus       130 ~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~g-a~~~~~-d~~g~t~L~~A~~~g~---~~~v~~Ll~~g~~~~~~~~  204 (364)
T 3ljn_A          130 GSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLG-ASPTAK-DKADETPLMRAMEFRN---REALDLMMDTVPSKSSLRL  204 (364)
T ss_dssp             TTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHT-CCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHHCSCSSSCCT
T ss_pred             ccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcC-CCCccc-CCCCCCHHHHHHHcCC---HHHHHHHHhcccccccccc
Confidence            11225678999999999999  999999999999 999998 9999999999999999   9999999999999     9


Q ss_pred             cccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccCCCCccccccc
Q 006236          128 NCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLSKD  183 (655)
Q Consensus       128 n~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~tpl~~l~~~  183 (655)
                      |..|..|+||||+|+.      .++.+++++||++|++++..|..|.+|+..+...
T Consensus       205 ~~~~~~g~t~L~~A~~------~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~  254 (364)
T 3ljn_A          205 DYANKQGNSHLHWAIL------INWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRA  254 (364)
T ss_dssp             TCCCTTCCCTTHHHHT------TTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             cccCCCCCcHHHHHHH------cCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHh
Confidence            9999999999999997      8999999999999999999999999998665543

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.81  E-value=2.6e-20  Score=188.99  Aligned_cols=156  Identities=15%  Similarity=0.169  Sum_probs=127.5

Q ss_pred             cCCchHHHHHHHh---CCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcc
Q 006236           14 YNKSSILLELSAS---DDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNV   90 (655)
Q Consensus        14 ~~g~s~LL~AAa~---gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDv   90 (655)
                      ..|.|+||.|+..   |+.+.++.||+ .|++++....+  ........|..|.||||+|+..|+.+++++||++| +|+
T Consensus        52 ~~g~tpL~~A~~~~~~g~~~~v~~Ll~-~ga~~~~~~~~--i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g-a~~  127 (273)
T 2pnn_A           52 ETGKTCLLKAMLNLHNGQNDTIALLLD-VARKTDSLKQF--VNASYTDSYYKGQTALHIAIERRNMTLVTLLVENG-ADV  127 (273)
T ss_dssp             TTCCCHHHHHHHSCBTTBCHHHHHHHH-HHHHTTCHHHH--HTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTT-CCT
T ss_pred             cCCCCHHHHHHHHHhcCChHHHHHHHH-hhccccchhHH--hhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCC-CCc
Confidence            5789999999986   77777777765 67653321000  00111223578999999999999999999999999 999


Q ss_pred             ccccCC--------------CCChHHHHHHHcCCCChHHHHHHHHh---CCCCCcccCCCCCCccchhhhccCCCCcCh-
Q 006236           91 NRACGS--------------DGFTALHCAVAGGANSSFEVVKLLLS---ASADVNCVDVYGNKPVDLIPVAMKSPLHSR-  152 (655)
Q Consensus        91 N~~~d~--------------~G~TpLH~Aa~~G~~~~~eiVklLL~---~GADvn~~D~~G~TPLhlAa~~~~~~~~g~-  152 (655)
                      |.. +.              .|.||||+|+..|+   .++|++||+   .|++++.+|.+|+||||+|+.      .++ 
T Consensus       128 ~~~-~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~---~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~------~~~~  197 (273)
T 2pnn_A          128 QAA-ANGDFFKKTKGRPGFYFGELPLSLAACTNQ---LAIVKFLLQNSWQPADISARDSVGNTVLHALVE------VADN  197 (273)
T ss_dssp             TCC-BCSGGGSSCSSSCCCCSCBSHHHHHHHTTC---HHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHH------HCCS
T ss_pred             Ccc-ccccccccccccccccCCCCHHHHHHHcCC---HHHHHHHHhcccCCCCceeeCCCCCcHHHHHHH------ccCc
Confidence            988 55              79999999999999   999999999   999999999999999999986      454 


Q ss_pred             --------HHHHHHHHhCCCCCC-------cccccCCCCccccccc
Q 006236          153 --------KRAIELLLKGDHTIF-------EEEELVNIPVPQLSKD  183 (655)
Q Consensus       153 --------~eivelLL~~GAdin-------~~d~~g~tpl~~l~~~  183 (655)
                              .+++++|+++|++++       ..|..|.+|+..+...
T Consensus       198 ~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~  243 (273)
T 2pnn_A          198 TVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASS  243 (273)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHT
T ss_pred             chhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHh
Confidence                    799999999999997       4788999998665443

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.81  E-value=1.6e-19  Score=181.17  Aligned_cols=133  Identities=23%  Similarity=0.274  Sum_probs=125.7

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCC----HHHHHHHHHcCCCc
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGS----VAVLKYVIETGKVN   89 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~----~evvk~LL~~G~aD   89 (655)
                      ..|.++|+.|+..|+.+.++.+|...|++++..+             ..|+||||+|+..++    .+++++|++.| ++
T Consensus       146 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~-------------~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g-~~  211 (285)
T 1wdy_A          146 KGGATALMDAAEKGHVEVLKILLDEMGADVNACD-------------NMGRNALIHALLSSDDSDVEAITHLLLDHG-AD  211 (285)
T ss_dssp             CCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCC-------------TTSCCHHHHHHHCSCTTTHHHHHHHHHHTT-CC
T ss_pred             cCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccC-------------CCCCCHHHHHHHccccchHHHHHHHHHHcC-CC
Confidence            4578999999999999999999986699999884             889999999999999    99999999999 99


Q ss_pred             cccccCCCCChHHHHHHHcCCCChHHHHHHHHh-CCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCc
Q 006236           90 VNRACGSDGFTALHCAVAGGANSSFEVVKLLLS-ASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFE  168 (655)
Q Consensus        90 vN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~-~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~  168 (655)
                      +|.. +..|.||||+|+..|+   .+++++|++ .|++++.+|..|.||||+|+.      .++.+++++|+++|++++.
T Consensus       212 ~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~------~~~~~i~~~Ll~~Ga~~~~  281 (285)
T 1wdy_A          212 VNVR-GERGKTPLILAVEKKH---LGLVQRLLEQEHIEINDTDSDGKTALLLAVE------LKLKKIAELLCKRGASTDC  281 (285)
T ss_dssp             SSCC-CTTSCCHHHHHHHTTC---HHHHHHHHHSSSCCTTCCCTTSCCHHHHHHH------TTCHHHHHHHHHHSSCSCC
T ss_pred             CCCc-CCCCCcHHHHHHHcCC---HHHHHHHHhccCCCccccCCCCCcHHHHHHH------cCcHHHHHHHHHcCCCCCc
Confidence            9998 9999999999999999   999999999 899999999999999999997      8999999999999999997


Q ss_pred             cc
Q 006236          169 EE  170 (655)
Q Consensus       169 ~d  170 (655)
                      +|
T Consensus       282 ~d  283 (285)
T 1wdy_A          282 GD  283 (285)
T ss_dssp             SS
T ss_pred             cc
Confidence            65

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.81  E-value=2.4e-20  Score=189.21  Aligned_cols=151  Identities=18%  Similarity=0.245  Sum_probs=130.7

Q ss_pred             ccCCchHHHHHHHhCCHHHHHHHHH---hcCCCCCCCCcccccccCCccCCCCCChHHHHHHHc---CCHHHHHHHHHcC
Q 006236           13 LYNKSSILLELSASDDISAFKREIE---EKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMF---GSVAVLKYVIETG   86 (655)
Q Consensus        13 ~~~g~s~LL~AAa~gd~~~vk~LL~---~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~---G~~evvk~LL~~G   86 (655)
                      +..|.++||.||..|+.+.++.+|+   +.+.+++..+         ...|..|+||||+|+..   |+.+++++||+.|
T Consensus        10 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~---------~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~g   80 (273)
T 2pnn_A           10 RLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSE---------FKDPETGKTCLLKAMLNLHNGQNDTIALLLDVA   80 (273)
T ss_dssp             -CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGG---------GSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHH
T ss_pred             CcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcc---------cccCcCCCCHHHHHHHHHhcCChHHHHHHHHhh
Confidence            3568999999999999999888886   4677776431         11258899999999997   9999999999998


Q ss_pred             CCc-------ccc----ccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCC--------------CCCCccchh
Q 006236           87 KVN-------VNR----ACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDV--------------YGNKPVDLI  141 (655)
Q Consensus        87 ~aD-------vN~----~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~--------------~G~TPLhlA  141 (655)
                       ++       +|.    . +..|.||||+|+..|+   .++|++||++|++++..|.              .|.||||+|
T Consensus        81 -a~~~~~~~~i~~~~~~~-d~~g~tpL~~A~~~g~---~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A  155 (273)
T 2pnn_A           81 -RKTDSLKQFVNASYTDS-YYKGQTALHIAIERRN---MTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLA  155 (273)
T ss_dssp             -HHTTCHHHHHTCCCCST-TTTTCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHH
T ss_pred             -ccccchhHHhhcccccc-cCCCCCHHHHHHHcCC---HHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHH
Confidence             66       333    3 6689999999999999   9999999999999999997              799999999


Q ss_pred             hhccCCCCcChHHHHHHHHh---CCCCCCcccccCCCCccccccc
Q 006236          142 PVAMKSPLHSRKRAIELLLK---GDHTIFEEEELVNIPVPQLSKD  183 (655)
Q Consensus       142 a~~~~~~~~g~~eivelLL~---~GAdin~~d~~g~tpl~~l~~~  183 (655)
                      +.      .++.+++++||+   +|++++..|.+|.+|+..+...
T Consensus       156 ~~------~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~  194 (273)
T 2pnn_A          156 AC------TNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEV  194 (273)
T ss_dssp             HH------TTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHH
T ss_pred             HH------cCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHc
Confidence            97      899999999999   9999999999999999766543

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.81  E-value=7.1e-20  Score=195.72  Aligned_cols=159  Identities=18%  Similarity=0.169  Sum_probs=126.2

Q ss_pred             ccCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCC------cc--------------cccc---cCCccCCCCCChHHHH
Q 006236           13 LYNKSSILLELSASDDISAFKREIEEKGFDVDEPS------FW--------------YGRR---IGSKKMGFEERTPIMI   69 (655)
Q Consensus        13 ~~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~d------lw--------------~g~~---~~~~~~d~~G~TPLh~   69 (655)
                      +..|.|+||.|+..|+.+.++.||. .|++++..+      +.              ....   .+.+..|..|.||||+
T Consensus       163 d~~g~TpL~~A~~~g~~~iv~~Ll~-~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~  241 (373)
T 2fo1_E          163 DCDENTPLMLAVLARRRRLVAYLMK-AGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMI  241 (373)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHH-TTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHH
T ss_pred             CCCCCCHHHHHHHcChHHHHHHHHH-CCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHH
Confidence            3578999999999999988877776 899999875      11              1111   3445567888888888


Q ss_pred             HHHcC---CHHHHHHHHHcCCCccccc-------cCCCCChHHHHHHHcCCCChHHHHHHHHhCC-CCCcccCCCCCCcc
Q 006236           70 AAMFG---SVAVLKYVIETGKVNVNRA-------CGSDGFTALHCAVAGGANSSFEVVKLLLSAS-ADVNCVDVYGNKPV  138 (655)
Q Consensus        70 AA~~G---~~evvk~LL~~G~aDvN~~-------~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~G-ADvn~~D~~G~TPL  138 (655)
                      |+..+   +.+++++|++.| ++++..       .+..|.||||+|+..|+   .++|++|++.+ +++|.+|.+|.|||
T Consensus       242 A~~~~~~~~~~~v~~Ll~~g-~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~---~~~v~~Ll~~~~~~~n~~d~~g~TpL  317 (373)
T 2fo1_E          242 VAHNEGRDQVASAKLLVEKG-AKVDYDGAARKDSEKYKGRTALHYAAQVSN---MPIVKYLVGEKGSNKDKQDEDGKTPI  317 (373)
T ss_dssp             HHHSCSTTHHHHHHHHHHHT-CCSSCCSGGGTSSSSCCCCCTHHHHHSSCC---HHHHHHHHHHSCCCTTCCCTTCCCHH
T ss_pred             HHHhCCcchHHHHHHHHHCC-CCcccccccccCcccccCCCHHHHHHHhCC---HHHHHHHHHhcCCCccCcCCCCCCHH
Confidence            88887   788888888888 888752       15688888888888888   88888888765 88888888888888


Q ss_pred             chhhhccCCCCcChHHHHHHHHhCCCCCCcccccCCCCcccccc
Q 006236          139 DLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLSK  182 (655)
Q Consensus       139 hlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~tpl~~l~~  182 (655)
                      |+|+.      .++.+++++|+++|++++..|..|.+++..+..
T Consensus       318 ~~A~~------~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~  355 (373)
T 2fo1_E          318 MLAAQ------EGRIEVVMYLIQQGASVEAVDATDHTARQLAQA  355 (373)
T ss_dssp             HHHHH------HTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHH
T ss_pred             HHHHH------cCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHH
Confidence            88887      788888888888888888888888888765543

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.81  E-value=1e-20  Score=184.25  Aligned_cols=135  Identities=15%  Similarity=0.136  Sum_probs=117.7

Q ss_pred             CCchHHHHHHHhCCHH---HHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCC------HHHHHHHHHc
Q 006236           15 NKSSILLELSASDDIS---AFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGS------VAVLKYVIET   85 (655)
Q Consensus        15 ~g~s~LL~AAa~gd~~---~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~------~evvk~LL~~   85 (655)
                      .|.|+||.|+..++.+   .++++|++.|++||.++             .+|+||||+|+..|+      .+++++||++
T Consensus        37 ~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d-------------~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~  103 (186)
T 3t8k_A           37 LKSNILYDVLRNNNDEARYKISMFLINKGADIKSRT-------------KEGTTLFFPLFQGGGNDITGTTELCKIFLEK  103 (186)
T ss_dssp             HTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCC-------------TTCCCTHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCC-------------CCCCcHHHHHHHcCCcchhhHHHHHHHHHHC
Confidence            4889999999999865   36777777999999985             899999999999987      6889999999


Q ss_pred             CCCccccccCCCCC-hHHHHHHHcCCC--ChHHHHHHHHh-CCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHh
Q 006236           86 GKVNVNRACGSDGF-TALHCAVAGGAN--SSFEVVKLLLS-ASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLK  161 (655)
Q Consensus        86 G~aDvN~~~d~~G~-TpLH~Aa~~G~~--~~~eiVklLL~-~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~  161 (655)
                      | +|+|.+ |..|. ||||+|+..+..  ...+++++||+ +|+|++.+|..|.||||+|+.      .++.+++++|++
T Consensus       104 G-adin~~-d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~------~~~~~~v~~L~~  175 (186)
T 3t8k_A          104 G-ADITAL-YKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKR------CQKPIALKMMED  175 (186)
T ss_dssp             T-CCSSSC-BGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHT------TTCHHHHHHHHH
T ss_pred             C-CCCCcc-CCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHH------cCCHHHHHHHHH
Confidence            9 999999 99999 999999995541  12679999999 999999999999999999987      899999999998


Q ss_pred             CCCCCCccc
Q 006236          162 GDHTIFEEE  170 (655)
Q Consensus       162 ~GAdin~~d  170 (655)
                      +..+.++++
T Consensus       176 ~~~~~~~~~  184 (186)
T 3t8k_A          176 YIKKYNLKE  184 (186)
T ss_dssp             HHHHHTCCC
T ss_pred             HHHHHhccc
Confidence            766666544

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.80  E-value=2.1e-20  Score=187.74  Aligned_cols=149  Identities=15%  Similarity=0.194  Sum_probs=129.3

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHH---hcCCCCCCCCcccccccCCccCCCCCChHHHHHH---HcCCHHHHHHHHHcCC
Q 006236           14 YNKSSILLELSASDDISAFKREIE---EKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAA---MFGSVAVLKYVIETGK   87 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~---~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA---~~G~~evvk~LL~~G~   87 (655)
                      ..+.++|+.|+..|+.+.++.+|+   +.|.+++..+         ...|..|+||||+|+   ..|+.+++++|++.| 
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~---------~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g-   72 (260)
T 3jxi_A            3 VFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEE---------FREPSTGKTCLPKALLNLSAGRNDTIPILLDIA-   72 (260)
T ss_dssp             CCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGG---------GSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH-
T ss_pred             cchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhh---------hhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc-
Confidence            457899999999999998666665   6899998764         122577999999999   679999999999987 


Q ss_pred             Cc-----------cccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccC--------------CCCCCccchhh
Q 006236           88 VN-----------VNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVD--------------VYGNKPVDLIP  142 (655)
Q Consensus        88 aD-----------vN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D--------------~~G~TPLhlAa  142 (655)
                      ++           ++.. +..|.||||+|+..|+   .++|++|+++|++++..|              ..|.||||+|+
T Consensus        73 ~~~~~~~~~~~~~~~~~-d~~g~t~L~~A~~~g~---~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~  148 (260)
T 3jxi_A           73 EKTGNMREFINSPFRDV-YYRGQTALHIAIERRC---KHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAA  148 (260)
T ss_dssp             HHTTCHHHHHTCCBCCS-SEESBCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHH
T ss_pred             ccccchHhhhccccccc-ccCCCCHHHHHHHcCC---HHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHH
Confidence            55           2333 4589999999999999   999999999999999999              68999999999


Q ss_pred             hccCCCCcChHHHHHHHHh---CCCCCCcccccCCCCcccccc
Q 006236          143 VAMKSPLHSRKRAIELLLK---GDHTIFEEEELVNIPVPQLSK  182 (655)
Q Consensus       143 ~~~~~~~~g~~eivelLL~---~GAdin~~d~~g~tpl~~l~~  182 (655)
                      .      .++.+++++|++   +|++++..|..|.+|+..+..
T Consensus       149 ~------~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~  185 (260)
T 3jxi_A          149 C------TNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVA  185 (260)
T ss_dssp             H------TTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHH
T ss_pred             H------cCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHH
Confidence            7      899999999999   999999999999999976653

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.80  E-value=2.6e-19  Score=175.48  Aligned_cols=144  Identities=20%  Similarity=0.238  Sum_probs=132.4

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA   93 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~   93 (655)
                      ..+.++|+.|+..|+.+.++.++. .|++++..+             ..|.||||+|+..|+.+++++|++.+ ++++..
T Consensus         7 ~~~~~~l~~A~~~g~~~~~~~Ll~-~g~~~~~~~-------------~~g~t~L~~A~~~~~~~~v~~Ll~~~-~~~~~~   71 (240)
T 3eu9_A            7 DYSTWDIVKATQYGIYERCRELVE-AGYDVRQPD-------------KENVTLLHWAAINNRIDLVKYYISKG-AIVDQL   71 (240)
T ss_dssp             CGGGCCHHHHHHTTCHHHHHHHHH-TTCCTTCCC-------------TTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCC
T ss_pred             cccchHHHHHHHcCChHHHHHHHH-cCCCcCCCC-------------CCCCCHHHHHHHhCCHHHHHHHHHcC-Ccchhh
Confidence            456789999999999999988886 899999874             88999999999999999999999999 888877


Q ss_pred             cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccC
Q 006236           94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELV  173 (655)
Q Consensus        94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g  173 (655)
                      .+..|.||||+|+..|+   .+++++|++.|++++..|..|.||||+|+.      .++.+++++|+++|++++..+..|
T Consensus        72 ~~~~~~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~------~~~~~~~~~Ll~~~~~~~~~~~~g  142 (240)
T 3eu9_A           72 GGDLNSTPLHWATRQGH---LSMVVQLMKYGADPSLIDGEGCSCIHLAAQ------FGHTSIVAYLIAKGQDVDMMDQNG  142 (240)
T ss_dssp             BTTTTBCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHH------TTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             cCCcCCChhHHHHHcCC---HHHHHHHHHcCCCCcccCCCCCCHHHHHHH------cCHHHHHHHHHhcCCCccccCCCC
Confidence            56679999999999999   999999999999999999999999999997      899999999999999999999999


Q ss_pred             CCCccccc
Q 006236          174 NIPVPQLS  181 (655)
Q Consensus       174 ~tpl~~l~  181 (655)
                      .+++..+.
T Consensus       143 ~t~l~~a~  150 (240)
T 3eu9_A          143 MTPLMWAA  150 (240)
T ss_dssp             CCHHHHHH
T ss_pred             CcHHHHHH
Confidence            99986554

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.80  E-value=1.5e-19  Score=195.30  Aligned_cols=145  Identities=23%  Similarity=0.292  Sum_probs=132.1

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA   93 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~   93 (655)
                      ..|.|+||.||..|+.+.++.||+ .|+++|..+             ..|.||||+||..|+.+++++|++.| +++|..
T Consensus        12 ~~g~t~L~~Aa~~g~~~~v~~Ll~-~g~~~~~~~-------------~~~~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~   76 (437)
T 1n11_A           12 ESGLTPLHVASFMGHLPIVKNLLQ-RGASPNVSN-------------VKVETPLHMAARAGHTEVAKYLLQNK-AKVNAK   76 (437)
T ss_dssp             ---CCHHHHHHHHTCHHHHHHHHH-TTCCSCCSS-------------SCCCCHHHHHHHHTCHHHHHHHHHHT-CCSSCC
T ss_pred             CCCCCHHHHHHHCCCHHHHHHHHH-cCCCCCCCC-------------CCCCCHHHHHHHcCCHHHHHHHHhCC-CCCCCC
Confidence            468999999999999999988887 799999874             88999999999999999999999999 999998


Q ss_pred             cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccC
Q 006236           94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELV  173 (655)
Q Consensus        94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g  173 (655)
                       +..|.||||+|+..|+   .++|++|+++|++++..|..|.||||+|+.      .++.++++.|+++|++++..+..|
T Consensus        77 -~~~g~t~L~~A~~~g~---~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~------~g~~~~v~~Ll~~~~~~~~~~~~g  146 (437)
T 1n11_A           77 -AKDDQTPLHCAARIGH---TNMVKLLLENNANPNLATTAGHTPLHIAAR------EGHVETVLALLEKEASQACMTKKG  146 (437)
T ss_dssp             -CTTSCCHHHHHHHHTC---HHHHHHHHHHTCCTTCCCTTCCCHHHHHHH------HTCHHHHHHHHHTTCCSCCCCTTS
T ss_pred             -CCCCCCHHHHHHHCCC---HHHHHHHHhCCCCCCCCCCCCCcHHHHHHH------cCCHHHHHHHHhCCCCCcCCCCCC
Confidence             9999999999999999   999999999999999999999999999997      899999999999999999988889


Q ss_pred             CCCccccccc
Q 006236          174 NIPVPQLSKD  183 (655)
Q Consensus       174 ~tpl~~l~~~  183 (655)
                      .+++..+...
T Consensus       147 ~t~L~~A~~~  156 (437)
T 1n11_A          147 FTPLHVAAKY  156 (437)
T ss_dssp             CCHHHHHHHT
T ss_pred             CCHHHHHHHc
Confidence            9888655443

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.80  E-value=1.5e-19  Score=154.38  Aligned_cols=93  Identities=40%  Similarity=0.590  Sum_probs=88.7

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchh
Q 006236           62 EERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLI  141 (655)
Q Consensus        62 ~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlA  141 (655)
                      +|+||||+|+..|+.+++++|++.| +++|.+ +..|.||||+|+..|+   .+++++|+++|++++.+|.+|.||||+|
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~n~~-d~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~d~~g~t~l~~A   75 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAG-ADVNAK-DKNGRTPLHLAARNGH---LEVVKLLLEAGADVNAKDKNGRTPLHLA   75 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTT-CCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcC-CCCccc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCccCCCCCCHHHHH
Confidence            4899999999999999999999999 999998 9999999999999999   9999999999999999999999999999


Q ss_pred             hhccCCCCcChHHHHHHHHhCCCC
Q 006236          142 PVAMKSPLHSRKRAIELLLKGDHT  165 (655)
Q Consensus       142 a~~~~~~~~g~~eivelLL~~GAd  165 (655)
                      +.      .++.+++++|+++|++
T Consensus        76 ~~------~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           76 AR------NGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             HH------TTCHHHHHHHHHTTCC
T ss_pred             HH------cCCHHHHHHHHHcCCC
Confidence            97      8999999999999985

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.80  E-value=2.3e-19  Score=187.49  Aligned_cols=140  Identities=16%  Similarity=0.219  Sum_probs=123.7

Q ss_pred             CCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccc---
Q 006236           15 NKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVN---   91 (655)
Q Consensus        15 ~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN---   91 (655)
                      ++.|+|+.|+..|+++.|+.||+ +|+|||.++            +..|+||||+||..|+.++|++||++| ++++   
T Consensus        24 ~~~t~L~~Av~~g~~~~V~~LL~-~Gadvn~~~------------~~~g~TpLh~A~~~g~~~iv~~Ll~~g-a~~~~~~   89 (337)
T 4g8k_A           24 EDNHLLIKAVQNEDVDLVQQLLE-GGANVNFQE------------EEGGWTPLHNAVQMSREDIVELLLRHG-ADPVLRK   89 (337)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHH-HTCCTTCCC------------TTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCC
T ss_pred             CCChHHHHHHHcCCHHHHHHHHH-CCCCCCccC------------CCCCcCHHHHHHHcCCHHHHHHHHHcC-Cchhhhc
Confidence            46789999999999999888886 899999885            456999999999999999999999998 7654   


Q ss_pred             ------------------------------cccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCccc----------C
Q 006236           92 ------------------------------RACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCV----------D  131 (655)
Q Consensus        92 ------------------------------~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~----------D  131 (655)
                                                    .. +..|.||||+|+..|+   .+++++|+++|++++..          +
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~g~t~l~~A~~~~~---~~~~~~ll~~ga~~~~~~~~~~~~~~~~  165 (337)
T 4g8k_A           90 KNGATPFILAAIAGSVKLLKLFLSKGADVNEC-DFYGFTAFMEAAVYGK---VKALKFLYKRGANVNLRRKTKEDQERLR  165 (337)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCB-CTTCCBHHHHHHHTTC---HHHHHHHHHTTCCTTCCCCCC-----CT
T ss_pred             cCCCchhHHHHhcccchhhHHhhhccchhhhh-ccCCCCHHHHHHHcCc---HHHHHHHHHcCCCcchhhcccccccccc
Confidence                                          34 6789999999999999   99999999999998754          4


Q ss_pred             CCCCCccchhhhccCCCCcChHHHHHHHHh-CCCCCCcccccCCCCcc
Q 006236          132 VYGNKPVDLIPVAMKSPLHSRKRAIELLLK-GDHTIFEEEELVNIPVP  178 (655)
Q Consensus       132 ~~G~TPLhlAa~~~~~~~~g~~eivelLL~-~GAdin~~d~~g~tpl~  178 (655)
                      ..|.||||+|+.      .++.+++++||+ .|++++..|..|.+++.
T Consensus       166 ~~g~T~L~~A~~------~g~~~~v~~LL~~~gad~n~~d~~g~t~l~  207 (337)
T 4g8k_A          166 KGGATALMDAAE------KGHVEVLKILLDEMGADVNACDNMGRNALI  207 (337)
T ss_dssp             TCSCCHHHHHHH------HTCHHHHHHHHHHSCCCTTCCCTTSCCHHH
T ss_pred             CCCCcHHHHHHH------CCCHHHHHHHHhccCCCcCccCCCCCcHHH
Confidence            568999999997      899999999995 69999999999998874

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.80  E-value=4.6e-20  Score=168.41  Aligned_cols=111  Identities=21%  Similarity=0.268  Sum_probs=105.4

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCC-CCCcc
Q 006236           60 GFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVY-GNKPV  138 (655)
Q Consensus        60 d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~-G~TPL  138 (655)
                      |..|.||||+|+..|+.+++++|++.| +++|.. +..|.||||+|+. |+   .+++++|+++|++++.+|.. |.|||
T Consensus         9 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~-~~~g~t~L~~A~~-~~---~~~v~~Ll~~g~~~~~~~~~~g~t~L   82 (136)
T 1d9s_A            9 GGSSDAGLATAAARGQVETVRQLLEAG-ADPNAL-NRFGRRPIQVMMM-GS---AQVAELLLLHGAEPNCADPATLTRPV   82 (136)
T ss_dssp             CCCCSCHHHHHHHTTCHHHHHHHHHTT-CCTTCC-CTTCCTTTTTSTT-SC---HHHHHHHHHHTCCSSCCBTTTTBCHH
T ss_pred             CCCCccHHHHHHHcCCHHHHHHHHHcC-CCcCCc-CCCCCCHHHHHHc-CC---HHHHHHHHHCCCCCCCcCCCCCCCHH
Confidence            589999999999999999999999999 999998 9999999999999 99   99999999999999999999 99999


Q ss_pred             chhhhccCCCCcChHHHHHHHHhCCCCCCcccccCCCCcccccc
Q 006236          139 DLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLSK  182 (655)
Q Consensus       139 hlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~tpl~~l~~  182 (655)
                      |+|+.      .++.+++++|+++|++++..|..|.+|+..+..
T Consensus        83 ~~A~~------~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~  120 (136)
T 1d9s_A           83 HDAAR------EGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEE  120 (136)
T ss_dssp             HHHHH------HTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHH
T ss_pred             HHHHH------cCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHH
Confidence            99997      899999999999999999999999999865543

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.79  E-value=1.5e-19  Score=189.07  Aligned_cols=142  Identities=22%  Similarity=0.289  Sum_probs=122.2

Q ss_pred             CchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHc---CCHHHHHHHHHcCCCcccc
Q 006236           16 KSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMF---GSVAVLKYVIETGKVNVNR   92 (655)
Q Consensus        16 g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~---G~~evvk~LL~~G~aDvN~   92 (655)
                      ..++|+.|+..|+.+.++.+|. .|++++...       .....+..|+||||+|+..   |+.+++++||++| +|+|.
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~-~g~d~~~~~-------~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~g-advn~  221 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFA-NGQDFGQPL-------PGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNG-GHLDA  221 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHH-TTCCTTSCE-------ECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHS-SCTTC
T ss_pred             hHHHHhhhhhccCHHHHHHHHh-cCCcccccC-------CCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcC-CCCCC
Confidence            3467999999999999999885 899998731       0001258899999999997   8999999999999 99999


Q ss_pred             ccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCccccc
Q 006236           93 ACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEEL  172 (655)
Q Consensus        93 ~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~  172 (655)
                      . |..|+||||+|+..|+   .++|++||++|+|++.+|.+|.||||+|+.      .++.+++++|+++|++      .
T Consensus       222 ~-d~~G~TpLh~A~~~g~---~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~------~~~~~iv~~Ll~~ga~------~  285 (301)
T 2b0o_E          222 K-AADGNTALHYAALYNQ---PDCLKLLLKGRALVGTVNEAGETALDIARK------KHHKECEELLEQAQAG------T  285 (301)
T ss_dssp             C-CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCCSCCCTTSCCHHHHHHH------HTCHHHHHHHHHHHHH------T
T ss_pred             C-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCCHHHHHHH------cCCHHHHHHHHHhcCC------C
Confidence            8 9999999999999999   999999999999999999999999999997      8999999999999876      4


Q ss_pred             CCCCcccccc
Q 006236          173 VNIPVPQLSK  182 (655)
Q Consensus       173 g~tpl~~l~~  182 (655)
                      +.+|+..+..
T Consensus       286 g~tpLh~A~~  295 (301)
T 2b0o_E          286 FAFPLHVDYS  295 (301)
T ss_dssp             TSSCCC----
T ss_pred             CCChhHHHHh
Confidence            5677765543

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.79  E-value=6.6e-20  Score=188.85  Aligned_cols=150  Identities=14%  Similarity=0.083  Sum_probs=82.7

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCC----c--------------ccccccCCccCCCCCChHHHHHHHcCC
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPS----F--------------WYGRRIGSKKMGFEERTPIMIAAMFGS   75 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~d----l--------------w~g~~~~~~~~d~~G~TPLh~AA~~G~   75 (655)
                      .+|.|+||.|+..|+.+.++.+|. .|+++|..+    +              +.....+.+..|..|+||||+|+..|+
T Consensus        29 ~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~  107 (285)
T 3kea_A           29 VHGHSASYYAIADNNVRLVCTLLN-AGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGN  107 (285)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHH-TTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHh-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCC
Confidence            568899999999998888877776 788888753    0              001111122234445555555555555


Q ss_pred             HHHHHHHHHcCCCccccccCCCC-ChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHH
Q 006236           76 VAVLKYVIETGKVNVNRACGSDG-FTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKR  154 (655)
Q Consensus        76 ~evvk~LL~~G~aDvN~~~d~~G-~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~e  154 (655)
                      .+++++|+++| ++++.. +..| .||||+|+..|+   .+++++|+++|+++... ..|.||||+|+.      .++.+
T Consensus       108 ~~~v~~Ll~~g-a~~~~~-~~~g~~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~------~g~~~  175 (285)
T 3kea_A          108 MQTVKLFVKKN-WRLMFY-GKTGWKTSFYHAVMLND---VSIVSYFLSEIPSTFDL-AILLSCIHITIK------NGHVD  175 (285)
T ss_dssp             HHHHHHHHHHC-GGGGGC-SSSGGGSHHHHHHHTTC---HHHHHHHHTTSCTTCCC-STHHHHHHHHHH------TTCHH
T ss_pred             HHHHHHHHhcC-CCCCcc-CCCCCCCHHHHHHHcCC---HHHHHHHHhCCCccccc-cCCccHHHHHHH------cChHH
Confidence            55555555554 555544 4444 455555555554   55555555554444111 144555555544      55566


Q ss_pred             HHHHHHhCCCCCCcccccCCCC
Q 006236          155 AIELLLKGDHTIFEEEELVNIP  176 (655)
Q Consensus       155 ivelLL~~GAdin~~d~~g~tp  176 (655)
                      ++++|+++|++++..|..|.+|
T Consensus       176 ~v~~Ll~~gad~n~~~~~g~t~  197 (285)
T 3kea_A          176 MMILLLDYMTSTNTNNSLLFIP  197 (285)
T ss_dssp             HHHHHHHHHHHTCTTCCCBCCT
T ss_pred             HHHHHHHcCCCCCcccCCCCCh
Confidence            6666666666666666666655

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.79  E-value=1.9e-19  Score=161.25  Aligned_cols=110  Identities=23%  Similarity=0.211  Sum_probs=103.0

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccc
Q 006236           60 GFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVD  139 (655)
Q Consensus        60 d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLh  139 (655)
                      +..|.||||+|+..|+.+++++|++.| +++|.. +..|.||||+|+..|+   .+++++|++.|++++.+|..|+||||
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~-~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~d~~g~tpL~   78 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKG-EDVNRT-LEGGRKPLHYAADCGQ---LEILEFLLLKGADINAPDKHHITPLL   78 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTT-CCTTSC-CTTSSCHHHHHHHTTC---HHHHHHHHTTTCCTTCCCTTSCCHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcC-CCcCcc-CCCCCcHHHHHHHcCC---HHHHHHHHHcCCCCCcCCCCCCCHHH
Confidence            467899999999999999999999999 999998 9999999999999999   99999999999999999999999999


Q ss_pred             hhhhccCCCCcChHHHHHHHHhCCCCCCcccccCCCCcccc
Q 006236          140 LIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQL  180 (655)
Q Consensus       140 lAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~tpl~~l  180 (655)
                      +|+.      .++.+++++|+++|++++.+|.+|.+|+..+
T Consensus        79 ~A~~------~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A  113 (123)
T 3aaa_C           79 SAVY------EGHVSCVKLLLSKGADKTVKGPDGLTAFEAT  113 (123)
T ss_dssp             HHHH------HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHC
T ss_pred             HHHH------cCCHHHHHHHHHcCCCCCCcCCCCCCHHHHh
Confidence            9997      8999999999999999999999999998654

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.79  E-value=1.5e-19  Score=173.52  Aligned_cols=129  Identities=23%  Similarity=0.257  Sum_probs=112.3

Q ss_pred             CCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccc
Q 006236           15 NKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRAC   94 (655)
Q Consensus        15 ~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~   94 (655)
                      .|.|+||.|+..|+.+.++.+|.  |+++|..+             ..|+||||+|+..|+.+++++|+++| +++|...
T Consensus        43 ~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d-------------~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~  106 (183)
T 3deo_A           43 EYETPWWTAARKADEQALSQLLE--DRDVDAVD-------------ENGRTALLFVAGLGSDKCVRLLAEAG-ADLDHRD  106 (183)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHTT--TSCTTCCC-------------TTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHh--cCCCCCcC-------------CCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCcCC
Confidence            56799999999999999988886  89999884             89999999999999999999999999 9999983


Q ss_pred             CCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhcc----------CCCCcChHHHHHHHHhC
Q 006236           95 GSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAM----------KSPLHSRKRAIELLLKG  162 (655)
Q Consensus        95 d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~----------~~~~~g~~eivelLL~~  162 (655)
                      +..|+||||+|+..|+   .+++++|+++|++++.+|.+|.||||+|+...          .+...+..+++++|.++
T Consensus       107 ~~~g~tpL~~A~~~~~---~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          107 MRGGLTALHMAAGYVR---PEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             SSSSCCHHHHHHHTTC---HHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHhcCc---HHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccCcccccHHHHHHHcCHHHHHHHHHHh
Confidence            3899999999999999   99999999999999999999999999998621          11223556777777643

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.78  E-value=5.8e-19  Score=182.33  Aligned_cols=132  Identities=22%  Similarity=0.293  Sum_probs=118.3

Q ss_pred             chHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHc---CCHHHHHHHHHcCCCccccc
Q 006236           17 SSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMF---GSVAVLKYVIETGKVNVNRA   93 (655)
Q Consensus        17 ~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~---G~~evvk~LL~~G~aDvN~~   93 (655)
                      ...|+.|+..+|.+.++.++. .|++++...       .....|..|+||||+|+..   |+.+++++||++| +|+|..
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~-~g~~~~~~~-------~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~g-a~in~~  201 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYA-DGVDLTEKI-------PLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNS-GNLDKQ  201 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHH-TTCCTTSBC-------CCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHC-SCTTCC
T ss_pred             hhhhhhHhhhcccHHHHHHHH-hhcchhhhc-------cccccccCCCCcchHHHHhcccchHHHHHHHHHCC-CCcccc
Confidence            478999999999999988886 799876542       0122257899999999999   8999999999999 999998


Q ss_pred             cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCC
Q 006236           94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIF  167 (655)
Q Consensus        94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin  167 (655)
                       |..|+||||+|+..|+   .++|++||++|+|++.+|.+|.||||+|+.      .++.+++++|+++|++..
T Consensus       202 -d~~g~TpLh~A~~~g~---~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~------~~~~~~v~~Ll~~ga~~~  265 (278)
T 1dcq_A          202 -TGKGSTALHYCCLTDN---AECLKLLLRGKASIEIANESGETPLDIAKR------LKHEHCEELLTQALSGRF  265 (278)
T ss_dssp             -CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHH------TTCHHHHHHHHHHHTTCC
T ss_pred             -CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCccCCCCCHHHHHHH------cCCHHHHHHHHHcCCCCC
Confidence             9999999999999999   999999999999999999999999999997      899999999999988643

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.78  E-value=1.8e-19  Score=159.26  Aligned_cols=107  Identities=30%  Similarity=0.342  Sum_probs=100.3

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccc
Q 006236           60 GFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVD  139 (655)
Q Consensus        60 d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLh  139 (655)
                      |.+|+||||+|+..|+.+++++|++.| ++++.. +..|.||||+|+..|+   .+++++|+++|++++.+|..|.||||
T Consensus         6 d~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~-d~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~d~~g~tpl~   80 (115)
T 2l6b_A            6 SKDGNTPLHNAAKNGHAEEVKKLLSKG-ADVNAR-SKDGNTPLHLAAKNGH---AEIVKLLLAKGADVNARSKDGNTPEH   80 (115)
T ss_dssp             SCSSCCHHHHHHHHTCHHHHHHHTTTT-CCSSCC-CSSSCCTTHHHHTTTC---HHHHHHHTTTTCCTTCCCTTCCCTTH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCc-CCCCCCHHHHHHHcCc---HHHHHHHHHcCCCCcccCCCCCCHHH
Confidence            689999999999999999999999999 999998 9999999999999999   99999999999999999999999999


Q ss_pred             hhhhccCCCCcChHHHHHHHHhCCCCCCcccccCCCCc
Q 006236          140 LIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPV  177 (655)
Q Consensus       140 lAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~tpl  177 (655)
                      +|+.      .++.+++++|+++|++++..+..+.+|.
T Consensus        81 ~A~~------~~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           81 LAKK------NGHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             HHHT------TTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             HHHH------CCCHHHHHHHHHcCCCCCcCCccccccc
Confidence            9987      8999999999999999999888877763

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.78  E-value=4.9e-19  Score=173.46  Aligned_cols=142  Identities=20%  Similarity=0.251  Sum_probs=95.1

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA   93 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~   93 (655)
                      ..|.|+|+.|+..|+.+.++.++. .|.+++...            +..|.||||+|+..|+.+++++|++.| ++++..
T Consensus        40 ~~g~t~L~~A~~~~~~~~v~~Ll~-~~~~~~~~~------------~~~~~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~  105 (240)
T 3eu9_A           40 KENVTLLHWAAINNRIDLVKYYIS-KGAIVDQLG------------GDLNSTPLHWATRQGHLSMVVQLMKYG-ADPSLI  105 (240)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCB------------TTTTBCHHHHHHHHTCHHHHHHHHHTT-CCTTCC
T ss_pred             CCCCCHHHHHHHhCCHHHHHHHHH-cCCcchhhc------------CCcCCChhHHHHHcCCHHHHHHHHHcC-CCCccc
Confidence            456788888888888877776665 777776653            344677777777777777777777776 777766


Q ss_pred             cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccc-c
Q 006236           94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEE-L  172 (655)
Q Consensus        94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~-~  172 (655)
                       +..|.||||+|+..|+   .+++++|++.|++++..|..|.||||+|+.     .....+++++|++.|++++..+. .
T Consensus       106 -~~~g~t~l~~A~~~~~---~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~-----~~~~~~~~~~L~~~~~~~~~~~~~~  176 (240)
T 3eu9_A          106 -DGEGCSCIHLAAQFGH---TSIVAYLIAKGQDVDMMDQNGMTPLMWAAY-----RTHSVDPTRLLLTFNVSVNLGDKYH  176 (240)
T ss_dssp             -CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHH-----HCCSSTTHHHHHHTTCCTTCCCTTT
T ss_pred             -CCCCCCHHHHHHHcCH---HHHHHHHHhcCCCccccCCCCCcHHHHHHH-----hCChHHHHHHHHhcCCCcchhhccC
Confidence             6677777777777776   777777777777777777777777777663     12234555566666666655554 5


Q ss_pred             CCCCcc
Q 006236          173 VNIPVP  178 (655)
Q Consensus       173 g~tpl~  178 (655)
                      |.+|+.
T Consensus       177 g~t~L~  182 (240)
T 3eu9_A          177 KNTALH  182 (240)
T ss_dssp             CCCHHH
T ss_pred             CCcHHH
Confidence            555553

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.77  E-value=2.5e-19  Score=191.48  Aligned_cols=146  Identities=17%  Similarity=0.256  Sum_probs=130.4

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHH-------HhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcC
Q 006236           14 YNKSSILLELSASDDISAFKREI-------EEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETG   86 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL-------~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G   86 (655)
                      ..|.|+||+||..|+.+.++.+|       .+.|+++|..+             .+|.||||+|+..|+.++|++||+.|
T Consensus       123 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d-------------~~g~TpL~~A~~~g~~~iv~~Ll~~g  189 (373)
T 2fo1_E          123 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMD-------------CDENTPLMLAVLARRRRLVAYLMKAG  189 (373)
T ss_dssp             SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCC-------------TTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             cCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCC-------------CCCCCHHHHHHHcChHHHHHHHHHCC
Confidence            46889999999999987766655       36899999984             89999999999999999999999999


Q ss_pred             CCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCC---CCCcccCCCCCCccchhhhccCCCCcC---hHHHHHHHH
Q 006236           87 KVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS---ADVNCVDVYGNKPVDLIPVAMKSPLHS---RKRAIELLL  160 (655)
Q Consensus        87 ~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~G---ADvn~~D~~G~TPLhlAa~~~~~~~~g---~~eivelLL  160 (655)
                       ++++.. +..|.||||+|+..|+   .+++++|++.+   ++++..|..|.||||+|+.      .+   +.+++++|+
T Consensus       190 -a~~~~~-~~~g~t~L~~A~~~g~---~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~------~~~~~~~~~v~~Ll  258 (373)
T 2fo1_E          190 -ADPTIY-NKSERSALHQAAANRD---FGMMVYMLNSTKLKGDIEELDRNGMTALMIVAH------NEGRDQVASAKLLV  258 (373)
T ss_dssp             -CCSCCC-CTTCCCHHHHHHHTTC---HHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHH------SCSTTHHHHHHHHH
T ss_pred             -CCCccc-CCCCCCHHHHHHHCCC---HHHHHHHHhcCccccChhhcCCCCCCHHHHHHH------hCCcchHHHHHHHH
Confidence             999998 9999999999999999   99999999998   8999999999999999987      44   899999999


Q ss_pred             hCCCCCCc--------ccccCCCCccccccc
Q 006236          161 KGDHTIFE--------EEELVNIPVPQLSKD  183 (655)
Q Consensus       161 ~~GAdin~--------~d~~g~tpl~~l~~~  183 (655)
                      ++|++++.        .|..|.+++..+...
T Consensus       259 ~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~  289 (373)
T 2fo1_E          259 EKGAKVDYDGAARKDSEKYKGRTALHYAAQV  289 (373)
T ss_dssp             HHTCCSSCCSGGGTSSSSCCCCCTHHHHHSS
T ss_pred             HCCCCcccccccccCcccccCCCHHHHHHHh
Confidence            99999986        456788888655443

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.77  E-value=7.2e-19  Score=177.21  Aligned_cols=134  Identities=22%  Similarity=0.223  Sum_probs=117.8

Q ss_pred             CCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccc
Q 006236           15 NKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRAC   94 (655)
Q Consensus        15 ~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~   94 (655)
                      .|.|+||.|+..|+.+.++.+|.  |+++|..+             ..|+||||+|+..|+.++|++||++| +++|...
T Consensus        44 ~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d-------------~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~~  107 (244)
T 3ui2_A           44 EYETPWWTAARKADEQALSQLLE--DRDVDAVD-------------ENGRTALLFVAGLGSDKCVRLLAEAG-ADLDHRD  107 (244)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHTTT--TCCTTCBC-------------TTSCBHHHHHHHHTCHHHHHHHHHTT-CCTTCCC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHc--CCCCCCcC-------------CCCCCHHHHHHHCCCHHHHHHHHHcC-CCCCcCC
Confidence            56799999999999998888886  89999884             88999999999999999999999999 9999983


Q ss_pred             CCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhc----------cCCCCcChHHHHHHHHhCCC
Q 006236           95 GSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVA----------MKSPLHSRKRAIELLLKGDH  164 (655)
Q Consensus        95 d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~----------~~~~~~g~~eivelLL~~GA  164 (655)
                      +..|.||||+|+..|+   .++|++|+++|++++.+|..|.||||+|+..          +.++..++.+++++|++++.
T Consensus       108 ~~~g~t~L~~A~~~g~---~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~~l~~a~~~g~~~iv~~L~~~~~  184 (244)
T 3ui2_A          108 MRGGLTALHMAAGYVR---PEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVF  184 (244)
T ss_dssp             SSSCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHE
T ss_pred             CCCCCCHHHHHHHcCC---HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHhccCCCCHHHHHHHcChHHHHHHHHHhcc
Confidence            3889999999999999   9999999999999999999999999999741          11223678899999998765


Q ss_pred             CCC
Q 006236          165 TIF  167 (655)
Q Consensus       165 din  167 (655)
                      +..
T Consensus       185 ~~~  187 (244)
T 3ui2_A          185 EYA  187 (244)
T ss_dssp             EEE
T ss_pred             ccc
Confidence            543

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.76  E-value=6.1e-19  Score=160.91  Aligned_cols=112  Identities=27%  Similarity=0.357  Sum_probs=105.3

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccc
Q 006236           60 GFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVD  139 (655)
Q Consensus        60 d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLh  139 (655)
                      ...+.||||+||..|+.+++++|++.| +++|.. +..|.||||+|+..|+   .+++++|+++|++++.+|.+|.||||
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g-~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~d~~g~t~L~   85 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMANG-ADVNAK-DEYGLTPLYLATAHGH---LEIVEVLLKNGADVNAVDAIGFTPLH   85 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHTT-CCTTCC-CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHcC-CCCCCc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCcCCCCCCCHHH
Confidence            466899999999999999999999999 999998 9999999999999999   99999999999999999999999999


Q ss_pred             hhhhccCCCCcChHHHHHHHHhCCCCCCcccccCCCCcccccc
Q 006236          140 LIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLSK  182 (655)
Q Consensus       140 lAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~tpl~~l~~  182 (655)
                      +|+.      .++.+++++|+++|++++..|.+|.+++..+..
T Consensus        86 ~A~~------~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~  122 (136)
T 2jab_A           86 LAAF------IGHLEIAEVLLKHGADVNAQDKFGKTAFDISIG  122 (136)
T ss_dssp             HHHH------HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             HHHH------cCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHH
Confidence            9997      899999999999999999999999999865543

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.76  E-value=1.1e-18  Score=187.96  Aligned_cols=127  Identities=24%  Similarity=0.352  Sum_probs=114.8

Q ss_pred             CchHHHHHHHh-CCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccc
Q 006236           16 KSSILLELSAS-DDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRAC   94 (655)
Q Consensus        16 g~s~LL~AAa~-gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~   94 (655)
                      +.++||.|+.. ++.+.++.+|. .|+++|..+           .+.+|.||||+|+..|+.++|++||++| +|+|.. 
T Consensus       199 ~~t~L~~Aa~~~g~~~~v~~LL~-~Gadvn~~~-----------~~~~g~TpLh~Aa~~g~~~iv~~LL~~G-advn~~-  264 (368)
T 3jue_A          199 PGALLFRASGHPPSLPTMADALA-HGADVNWVN-----------GGQDNATPLIQATAANSLLACEFLLQNG-ANVNQA-  264 (368)
T ss_dssp             HHHHHHHHTSSSCCHHHHHHHHH-TTCCTTCCC-----------TTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCC-
T ss_pred             CCcHHHHHHHccCCHHHHHHHHH-cCCCCCccc-----------cccCCCCHHHHHHHCCCHHHHHHHHHcC-CCCCCC-
Confidence            45678888888 88888888876 999999873           1278999999999999999999999999 999998 


Q ss_pred             CCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCC
Q 006236           95 GSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHT  165 (655)
Q Consensus        95 d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAd  165 (655)
                      |..|+||||+|+..|+   .++|++||++|++++.+|.+|.||||+|+.      .++.+++++|+..+..
T Consensus       265 d~~G~TpLh~A~~~g~---~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~------~g~~~iv~lLl~~~~~  326 (368)
T 3jue_A          265 DSAGRGPLHHATILGH---TGLACLFLKRGADLGARDSEGRDPLTIAME------TANADIVTLLRLAKMR  326 (368)
T ss_dssp             CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHH------TTCHHHHHHHHHHHC-
T ss_pred             CCCCCCHHHHHHHcCc---HHHHHHHHHCcCCCCCcCCCCCCHHHHHHH------CCCHHHHHHHHHcCCC
Confidence            9999999999999999   999999999999999999999999999997      8999999999987643

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.76  E-value=1.8e-18  Score=173.22  Aligned_cols=124  Identities=19%  Similarity=0.283  Sum_probs=109.1

Q ss_pred             HHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHH
Q 006236           36 IEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFE  115 (655)
Q Consensus        36 L~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~e  115 (655)
                      |++.|++++..+          ..+..|.||||+|+..|+.+++++|++.| +++|.. +..|.||||+|+..|+   .+
T Consensus         4 ll~~~~~~~~~~----------~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~-d~~g~tpLh~A~~~g~---~~   68 (229)
T 2vge_A            4 VLRKAGSPRKAR----------RARLNPLVLLLDAALTGELEVVQQAVKEM-NDPSQP-NEEGITALHNAICGAN---YS   68 (229)
T ss_dssp             ------CCCCCC----------CTTSCHHHHHHHHHHHTCHHHHHHHHHHS-SCTTCC-CTTSCCHHHHHHHTTC---HH
T ss_pred             hhccCCCCcccc----------ccccchhHHHHHHHHcCCHHHHHHHHhcC-CCCCCC-CCCCCCHHHHHHHcCC---HH
Confidence            344788877653          23577899999999999999999999999 999998 9999999999999999   99


Q ss_pred             HHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCccc-ccCCCCcccc
Q 006236          116 VVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEE-ELVNIPVPQL  180 (655)
Q Consensus       116 iVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d-~~g~tpl~~l  180 (655)
                      +|++|++.|+++|.+|..|.||||+|+.      .++.+++++|+++|++++..+ .+|.+|+..+
T Consensus        69 ~v~~Ll~~ga~~n~~d~~g~tpLh~A~~------~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A  128 (229)
T 2vge_A           69 IVDFLITAGANVNSPDSHGWTPLHCAAS------CNDTVICMALVQHGAAIFATTLSDGATAFEKC  128 (229)
T ss_dssp             HHHHHHHTTCCTTCCCTTCCCHHHHHHH------TTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGC
T ss_pred             HHHHHHHCCCCCCCCCCCCCCHHHHHHH------cCCHHHHHHHHHcCCCcccccCCCCCCHHHHH
Confidence            9999999999999999999999999997      899999999999999999986 5999998665

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.76  E-value=1.2e-18  Score=178.74  Aligned_cols=125  Identities=25%  Similarity=0.299  Sum_probs=113.1

Q ss_pred             cCCchHHHHHH-----HhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCC
Q 006236           14 YNKSSILLELS-----ASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKV   88 (655)
Q Consensus        14 ~~g~s~LL~AA-----a~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~a   88 (655)
                      ..|.|+|+.|+     ..++.+.++.++. .|.+++..             +..|+||||+|+..|+.+++++||+.| +
T Consensus       143 ~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~-~g~~~~~~-------------~~~g~tpLh~A~~~g~~~~v~~Ll~~g-a  207 (276)
T 4hbd_A          143 RAGYSPIMLTALATLKTQDDIETVLQLFR-LGNINAKA-------------SQAGQTALMLAVSHGRVDVVKALLACE-A  207 (276)
T ss_dssp             TTSCCHHHHGGGCCCCSHHHHHHHHHHHH-HSCTTCCC-------------TTTCCCHHHHHHHTTCHHHHHHHHHTT-C
T ss_pred             CCCCCHHHHHHHHHhhhhhhHHHHHHHHH-cCCCcccc-------------CCCCCCHHHHHHHcCCHHHHHHHHhCC-C
Confidence            56889999998     5566766666665 78877776             488999999999999999999999999 9


Q ss_pred             ccccccCCCCChHHHHHHHcCCCChHHHHHHHHh-CCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCC
Q 006236           89 NVNRACGSDGFTALHCAVAGGANSSFEVVKLLLS-ASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGD  163 (655)
Q Consensus        89 DvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~-~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~G  163 (655)
                      |+|.. |..|+||||+|+..|+   .++|++||+ .|+|++.+|.+|.||||+|+.      .++.+++++|++++
T Consensus       208 d~n~~-d~~G~TpLh~A~~~g~---~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~------~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          208 DVNVQ-DDDGSTALMCACEHGH---KEIAGLLLAVPSCDISLTDRDGSTALMVALD------AGQSEIASMLYSRM  273 (276)
T ss_dssp             CTTCC-CTTSCCHHHHHHHHTC---HHHHHHHHTSTTCCTTCCCTTSCCHHHHHHH------HTCHHHHHHHHHHC
T ss_pred             CCCCC-CCCCCCHHHHHHHCCC---HHHHHHHHhcCCCCCcCcCCCCCCHHHHHHH------cCCHHHHHHHHhcc
Confidence            99999 9999999999999999   999999999 899999999999999999997      89999999999864

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.75  E-value=9.6e-19  Score=180.13  Aligned_cols=130  Identities=17%  Similarity=0.201  Sum_probs=107.2

Q ss_pred             CchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCC-ChHHHHHHHcCCHHHHHHHHHcCCCcccccc
Q 006236           16 KSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEE-RTPIMIAAMFGSVAVLKYVIETGKVNVNRAC   94 (655)
Q Consensus        16 g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G-~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~   94 (655)
                      |.|+||.|+..|+.+.++.+|. .|++++..             +..| .||||+|+..|+.+++++|+++| +++..  
T Consensus        95 g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~-------------~~~g~~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~--  157 (285)
T 3kea_A           95 GNTALYYAVDSGNMQTVKLFVK-KNWRLMFY-------------GKTGWKTSFYHAVMLNDVSIVSYFLSEI-PSTFD--  157 (285)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHH-HCGGGGGC-------------SSSGGGSHHHHHHHTTCHHHHHHHHTTS-CTTCC--
T ss_pred             CCcHHHHHHHcCCHHHHHHHHh-cCCCCCcc-------------CCCCCCCHHHHHHHcCCHHHHHHHHhCC-Ccccc--
Confidence            4455555555555554444443 35555544             5788 89999999999999999999999 77742  


Q ss_pred             CCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCc-cchhhhccCCCCcChHHHHHHHHhCCCCCCcccc
Q 006236           95 GSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKP-VDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEE  171 (655)
Q Consensus        95 d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TP-LhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~  171 (655)
                      ...|.||||+|+..|+   .+++++|+++|++++.+|..|.|| ||+|+.      .++.+++++|+++|++++..+.
T Consensus       158 ~~~g~t~L~~A~~~g~---~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~------~~~~~~v~~Ll~~gad~~~~~~  226 (285)
T 3kea_A          158 LAILLSCIHITIKNGH---VDMMILLLDYMTSTNTNNSLLFIPDIKLAID------NKDIEMLQALFKYDINIYSANL  226 (285)
T ss_dssp             CSTHHHHHHHHHHTTC---HHHHHHHHHHHHHTCTTCCCBCCTTHHHHHH------HTCHHHHHHHTTSCBCSTTTTG
T ss_pred             ccCCccHHHHHHHcCh---HHHHHHHHHcCCCCCcccCCCCChHHHHHHH------cCCHHHHHHHHHcCCCCCCCCh
Confidence            2389999999999999   999999999999999999999998 999997      8999999999999999998764

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.75  E-value=3e-18  Score=151.67  Aligned_cols=109  Identities=35%  Similarity=0.525  Sum_probs=103.6

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchh
Q 006236           62 EERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLI  141 (655)
Q Consensus        62 ~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlA  141 (655)
                      +|+||||+|+..|+.+++++|++.| ++++.. +..|.||||+|+..|+   .+++++|++.|++++.+|..|.||||+|
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~-~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~l~~A   75 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAG-ADVNAK-DKNGRTPLHLAARNGH---LEVVKLLLEAGADVNAKDKNGRTPLHLA   75 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHT-CCTTCC-CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcC-CCCCCc-CCCCCcHHHHHHHcCc---HHHHHHHHHcCCCCcccCCCCCcHHHHH
Confidence            4899999999999999999999999 999998 9999999999999999   9999999999999999999999999999


Q ss_pred             hhccCCCCcChHHHHHHHHhCCCCCCcccccCCCCccccc
Q 006236          142 PVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLS  181 (655)
Q Consensus       142 a~~~~~~~~g~~eivelLL~~GAdin~~d~~g~tpl~~l~  181 (655)
                      +.      .++.+++++|+++|++++..|..|.+|+..+.
T Consensus        76 ~~------~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~  109 (126)
T 1n0r_A           76 AR------NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA  109 (126)
T ss_dssp             HH------TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             HH------cChHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence            97      89999999999999999999999999886554

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.73  E-value=2.5e-18  Score=169.22  Aligned_cols=112  Identities=20%  Similarity=0.242  Sum_probs=106.0

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhC-CCCCcccCCCCCCcc
Q 006236           60 GFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA-SADVNCVDVYGNKPV  138 (655)
Q Consensus        60 d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~-GADvn~~D~~G~TPL  138 (655)
                      +..|.||||+||..|+.+++++||+.| +++|.. +..|+||||+|+..|+   .++|++|++. |++++.+|..|+|||
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~~g~~~~~~d~~g~tpL  144 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLDNR-VGVNGL-DKAGSTALYWACHGGH---KDIVEMLFTQPNIELNQQNKLGDTAL  144 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHHTT-CCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHTTSTTCCCCCCCTTSCCHH
T ss_pred             ccccccccccccccCcHHHHHHHHhCC-CCcccc-CCCCCCHHHHHHHcCC---HHHHHHHHcCCCCCccccCCCCCCHH
Confidence            567899999999999999999999999 999998 9999999999999999   9999999999 999999999999999


Q ss_pred             chhhhccCCCCcChHHHHHHHHhCCCCCCcccccCCCCcccccc
Q 006236          139 DLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLSK  182 (655)
Q Consensus       139 hlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~tpl~~l~~  182 (655)
                      |+|+.      .++.+++++||++|++++.+|.+|.+++..+..
T Consensus       145 ~~A~~------~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~  182 (222)
T 3ehr_A          145 HAAAW------KGYADIVQLLLAKGARTDLRNIEKKLAFDMATN  182 (222)
T ss_dssp             HHHHH------HTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCS
T ss_pred             HHHHH------cCCHHHHHHHHHcCCCCccccCCCCCHHHHhcc
Confidence            99997      899999999999999999999999999865543

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.72  E-value=2e-18  Score=161.17  Aligned_cols=111  Identities=22%  Similarity=0.229  Sum_probs=103.8

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCC-cc
Q 006236           60 GFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNK-PV  138 (655)
Q Consensus        60 d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~T-PL  138 (655)
                      +..|.||||+|+..|+.+++++|++.| +++|.. +..|.||||+|+ .|+   .+++++|+++|++++.+|..|.| ||
T Consensus         9 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~-~~~g~t~L~~A~-~~~---~~~v~~Ll~~g~~~~~~d~~g~ttpL   82 (156)
T 1bi7_B            9 MEPSADWLATAAARGRVEEVRALLEAG-ANPNAP-NSYGRRPIQVMM-MGS---ARVAELLLLHGAEPNCADPATLTRPV   82 (156)
T ss_dssp             -CCSTTHHHHHHHHTCHHHHHHHHTTT-CCTTCC-CSSSCCTTTSSC-TTC---HHHHHHHHTTTCCCCCCCTTTCCCHH
T ss_pred             CccchHHHHHHHHcCCHHHHHHHHHcC-CCCCCC-CCCCCCHHHHHH-cCC---HHHHHHHHHcCCCCCCcCCCCCcHHH
Confidence            578999999999999999999999999 999998 999999999985 788   99999999999999999999999 99


Q ss_pred             chhhhccCCCCcChHHHHHHHHhCCCCCCcccccCCCCcccccc
Q 006236          139 DLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLSK  182 (655)
Q Consensus       139 hlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~tpl~~l~~  182 (655)
                      |+|+.      .++.+++++|+++|++++..|..|.+|+..+..
T Consensus        83 ~~A~~------~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~  120 (156)
T 1bi7_B           83 HDAAR------EGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEE  120 (156)
T ss_dssp             HHHHH------HTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHH
T ss_pred             HHHHH------CCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence            99997      899999999999999999999999999865543

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.72  E-value=2.1e-18  Score=165.46  Aligned_cols=111  Identities=24%  Similarity=0.196  Sum_probs=104.7

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccC-CCCCCcc
Q 006236           60 GFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVD-VYGNKPV  138 (655)
Q Consensus        60 d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D-~~G~TPL  138 (655)
                      +.+|.||||+|+..|+.+++++||+ + +++|.. +..|+||||+|+..|+   .+++++|+++|+++|.+| .+|+|||
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~-~~~~~~-d~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~~g~tpL  114 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-D-RDVDAV-DENGRTALLFVAGLGS---DKCVRLLAEAGADLDHRDMRGGLTAL  114 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-T-SCTTCC-CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCSSSSCCHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-c-CCCCCc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCcCCCCCCCCHH
Confidence            4678999999999999999999999 7 999998 9999999999999999   999999999999999998 8999999


Q ss_pred             chhhhccCCCCcChHHHHHHHHhCCCCCCcccccCCCCcccccc
Q 006236          139 DLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLSK  182 (655)
Q Consensus       139 hlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~tpl~~l~~  182 (655)
                      |+|+.      .++.+++++|+++|++++.+|.+|.+|+..+..
T Consensus       115 ~~A~~------~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~  152 (183)
T 3deo_A          115 HMAAG------YVRPEVVEALVELGADIEVEDERGLTALELARE  152 (183)
T ss_dssp             HHHHH------TTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHH
T ss_pred             HHHHh------cCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHH
Confidence            99997      899999999999999999999999999866543

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.71  E-value=6.2e-17  Score=138.10  Aligned_cols=93  Identities=37%  Similarity=0.485  Sum_probs=86.0

Q ss_pred             CCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccccc
Q 006236           15 NKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRAC   94 (655)
Q Consensus        15 ~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~   94 (655)
                      +|.|+||.|+..|+.+.++.+|. .|+++|.++             .+|+||||+|+..|+.+++++|++.| ++++.+ 
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~n~~d-------------~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~-   64 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLE-AGADVNAKD-------------KNGRTPLHLAARNGHLEVVKLLLEAG-ADVNAK-   64 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHH-TTCCTTCCC-------------TTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCC-
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHH-cCCCCcccC-------------CCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCcc-
Confidence            47899999999999998887776 899999985             89999999999999999999999999 999998 


Q ss_pred             CCCCChHHHHHHHcCCCChHHHHHHHHhCCCC
Q 006236           95 GSDGFTALHCAVAGGANSSFEVVKLLLSASAD  126 (655)
Q Consensus        95 d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GAD  126 (655)
                      |..|.||||+|+..|+   .+++++|+++||+
T Consensus        65 d~~g~t~l~~A~~~~~---~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           65 DKNGRTPLHLAARNGH---LEVVKLLLEAGAY   93 (93)
T ss_dssp             CTTSCCHHHHHHHTTC---HHHHHHHHHTTCC
T ss_pred             CCCCCCHHHHHHHcCC---HHHHHHHHHcCCC
Confidence            9999999999999999   9999999999986

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.70  E-value=1.8e-17  Score=146.27  Aligned_cols=106  Identities=29%  Similarity=0.375  Sum_probs=97.0

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA   93 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~   93 (655)
                      .+|.|+||.|+..++.+.++.+|. .|+++|..+             ..|.||||+|+..|+.+++++|++.| ++++..
T Consensus         7 ~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~d-------------~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~   71 (115)
T 2l6b_A            7 KDGNTPLHNAAKNGHAEEVKKLLS-KGADVNARS-------------KDGNTPLHLAAKNGHAEIVKLLLAKG-ADVNAR   71 (115)
T ss_dssp             CSSCCHHHHHHHHTCHHHHHHHTT-TTCCSSCCC-------------SSSCCTTHHHHTTTCHHHHHHHTTTT-CCTTCC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcC-------------CCCCCHHHHHHHcCcHHHHHHHHHcC-CCCccc
Confidence            468899999999999998887775 899999884             88999999999999999999999999 999998


Q ss_pred             cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCcc
Q 006236           94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPV  138 (655)
Q Consensus        94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPL  138 (655)
                       +..|.||||+|+..|+   .+++++|+++|+++|.++..|.||-
T Consensus        72 -d~~g~tpl~~A~~~~~---~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           72 -SKDGNTPEHLAKKNGH---HEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             -CTTCCCTTHHHHTTTC---HHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             -CCCCCCHHHHHHHCCC---HHHHHHHHHcCCCCCcCCccccccc
Confidence             9999999999999999   9999999999999999999999874

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.69  E-value=3.5e-18  Score=179.55  Aligned_cols=144  Identities=13%  Similarity=0.068  Sum_probs=109.7

Q ss_pred             HHHHHHhCCHHHHHHHHHhcCCCCCC-CCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccCCCC
Q 006236           20 LLELSASDDISAFKREIEEKGFDVDE-PSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDG   98 (655)
Q Consensus        20 LL~AAa~gd~~~vk~LL~~~GadIn~-~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~~G   98 (655)
                      +++++..+....++++|.+.|+++|. .             |.+|+||||+||..|+.++|++||++| +|+|.. +..|
T Consensus       100 ~~~~a~~~~~~~~~~~l~~~g~dvn~~~-------------d~~g~TpLh~Aa~~g~~~~v~~Ll~~G-ad~n~~-d~~g  164 (327)
T 1sw6_A          100 QQHVSFDSLLQEVNDAFPNTQLNLNIPV-------------DEHGNTPLHWLTSIANLELVKHLVKHG-SNRLYG-DNMG  164 (327)
T ss_dssp             ----CHHHHHHHHHHHCTTSCCCSCSCC-------------STTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTBC-CTTC
T ss_pred             hhHHHHHhhHHHHHHHHHhcCCCccccc-------------CCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCc-CCCC
Confidence            45667777888888999889999999 6             489999999999999999999999999 999998 9999


Q ss_pred             ChHHHHHHHcCCCChHHHHHHHHhCC-CCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhC---------------
Q 006236           99 FTALHCAVAGGANSSFEVVKLLLSAS-ADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKG---------------  162 (655)
Q Consensus        99 ~TpLH~Aa~~G~~~~~eiVklLL~~G-ADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~---------------  162 (655)
                      +||||+|+..|+....++++.|++.+ ++++.+|..|+||||+|+.  .....++.+++++|++.               
T Consensus       165 ~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~--~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~  242 (327)
T 1sw6_A          165 ESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIII--TSGMTGCSAAAKYYLDILMGWIVKKQNRPIQS  242 (327)
T ss_dssp             CCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHH--HHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEE
T ss_pred             CCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHH--HccccccHHHHHHHHHHHHHHHhcccchHHHh
Confidence            99999999988511136777888776 7899999999999999985  22336889999999987               


Q ss_pred             -----CCCCCcccccCCCCcccc
Q 006236          163 -----DHTIFEEEELVNIPVPQL  180 (655)
Q Consensus       163 -----GAdin~~d~~g~tpl~~l  180 (655)
                           |++++..+..|.+|+...
T Consensus       243 ~~~~~g~~~~~~~~~g~t~L~~a  265 (327)
T 1sw6_A          243 GTNEKESKPNDKNGERKDSILEN  265 (327)
T ss_dssp             C----------------CHHHHH
T ss_pred             hhhcccCCcccccccCCChhHHH
Confidence                 888888888888887443

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.69  E-value=1.7e-17  Score=167.22  Aligned_cols=110  Identities=25%  Similarity=0.194  Sum_probs=103.9

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccC-CCCCCcc
Q 006236           60 GFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVD-VYGNKPV  138 (655)
Q Consensus        60 d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D-~~G~TPL  138 (655)
                      +.+|.||||+|+..|+.+++++||+ + +++|.. +..|.||||+|+..|+   .++|++|+++|+++|.+| ..|.|||
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~-~~~~~~-d~~g~t~L~~A~~~g~---~~~v~~Ll~~ga~~~~~~~~~g~t~L  115 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE-D-RDVDAV-DENGRTALLFVAGLGS---DKCVRLLAEAGADLDHRDMRGGLTAL  115 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT-T-CCTTCB-CTTSCBHHHHHHHHTC---HHHHHHHHHTTCCTTCCCSSSCCCHH
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc-C-CCCCCc-CCCCCCHHHHHHHCCC---HHHHHHHHHcCCCCCcCCCCCCCCHH
Confidence            3578999999999999999999999 7 999998 9999999999999999   999999999999999998 8899999


Q ss_pred             chhhhccCCCCcChHHHHHHHHhCCCCCCcccccCCCCccccc
Q 006236          139 DLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLS  181 (655)
Q Consensus       139 hlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~tpl~~l~  181 (655)
                      |+|+.      .++.+++++|+++|++++..|..|.+|+..+.
T Consensus       116 ~~A~~------~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~  152 (244)
T 3ui2_A          116 HMAAG------YVRPEVVEALVELGADIEVEDERGLTALELAR  152 (244)
T ss_dssp             HHHHH------TTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             HHHHH------cCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence            99997      89999999999999999999999999986554

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.66  E-value=1.3e-16  Score=140.90  Aligned_cols=92  Identities=32%  Similarity=0.454  Sum_probs=85.4

Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCC
Q 006236           57 KKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNK  136 (655)
Q Consensus        57 ~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~T  136 (655)
                      ...|.+|.||||+|+..|+.+++++|++.| +++|.. |..|.||||+|+..|+   .+++++|+++|++++.+|..|.|
T Consensus        18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~i~~~-d~~g~tpLh~A~~~~~---~~~v~~Ll~~ga~~~~~d~~g~t   92 (110)
T 2zgd_A           18 SHMGSDLGKKLLEAARAGQDDEVRILMANG-ADVAAK-DKNGSTPLHLAARNGH---LEVVKLLLEAGADVXAQDKFGKT   92 (110)
T ss_dssp             ----CCHHHHHHHHHHHTCHHHHHHHHHTT-CCTTCC-CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             cccCCccchHHHHHHHcCCHHHHHHHHHcC-CCCCcc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCccccccCCCc
Confidence            445789999999999999999999999999 999998 9999999999999999   99999999999999999999999


Q ss_pred             ccchhhhccCCCCcChHHHHHHH
Q 006236          137 PVDLIPVAMKSPLHSRKRAIELL  159 (655)
Q Consensus       137 PLhlAa~~~~~~~~g~~eivelL  159 (655)
                      |||+|+.      .++.+++++|
T Consensus        93 pl~~A~~------~~~~~~~~~L  109 (110)
T 2zgd_A           93 AFDISID------NGNEDLAEIL  109 (110)
T ss_dssp             HHHHHHH------HTCHHHHHHH
T ss_pred             HHHHHHH------cCCHHHHHHh
Confidence            9999997      8999999987

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.59  E-value=1.5e-15  Score=158.69  Aligned_cols=105  Identities=20%  Similarity=0.144  Sum_probs=90.8

Q ss_pred             cCCchHHHHHHHh---CCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcc
Q 006236           14 YNKSSILLELSAS---DDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNV   90 (655)
Q Consensus        14 ~~g~s~LL~AAa~---gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDv   90 (655)
                      ..|.|+||.|+..   ++.+.++.|| +.|++||.++             .+|+||||+|+..|+.+++++||+.| +|+
T Consensus       188 ~~g~t~Lh~A~~~~~~~~~~iv~~Ll-~~gadvn~~d-------------~~G~TpLh~A~~~g~~~~v~~Ll~~g-ad~  252 (301)
T 2b0o_E          188 APEELVLHLAVKVANQASLPLVDFII-QNGGHLDAKA-------------ADGNTALHYAALYNQPDCLKLLLKGR-ALV  252 (301)
T ss_dssp             SCEECHHHHHHHTCCTTTHHHHHHHH-HHSSCTTCCC-------------TTCCCHHHHHHHTTCHHHHHHHHHTT-CCC
T ss_pred             CCCccHHHHHHHhcccCcHHHHHHHH-hcCCCCCCCC-------------CCCCCHHHHHHHcCCHHHHHHHHHcC-CCC
Confidence            4678999999987   6666555555 4899999984             89999999999999999999999999 999


Q ss_pred             ccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhh
Q 006236           91 NRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPV  143 (655)
Q Consensus        91 N~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~  143 (655)
                      +.+ |..|.||||+|+..|+   .+++++|+++|++      .|.||||+|+.
T Consensus       253 ~~~-d~~G~TpL~~A~~~~~---~~iv~~Ll~~ga~------~g~tpLh~A~~  295 (301)
T 2b0o_E          253 GTV-NEAGETALDIARKKHH---KECEELLEQAQAG------TFAFPLHVDYS  295 (301)
T ss_dssp             SCC-CTTSCCHHHHHHHHTC---HHHHHHHHHHHHH------TTSSCCC----
T ss_pred             CCc-CCCCCCHHHHHHHcCC---HHHHHHHHHhcCC------CCCChhHHHHh
Confidence            998 9999999999999999   9999999999886      58999999985

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.58  E-value=1.2e-15  Score=164.41  Aligned_cols=112  Identities=20%  Similarity=0.219  Sum_probs=104.2

Q ss_pred             CCCChHHHHHHHc-CCHHHHHHHHHcCCCccccccC--CCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCc
Q 006236           61 FEERTPIMIAAMF-GSVAVLKYVIETGKVNVNRACG--SDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKP  137 (655)
Q Consensus        61 ~~G~TPLh~AA~~-G~~evvk~LL~~G~aDvN~~~d--~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TP  137 (655)
                      ..+.|+||+|+.. |+++++++||+.| +|+|.. +  ..|.||||+|+..|+   .++|++||++|+++|..|..|+||
T Consensus       197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~G-advn~~-~~~~~g~TpLh~Aa~~g~---~~iv~~LL~~Gadvn~~d~~G~Tp  271 (368)
T 3jue_A          197 LHPGALLFRASGHPPSLPTMADALAHG-ADVNWV-NGGQDNATPLIQATAANS---LLACEFLLQNGANVNQADSAGRGP  271 (368)
T ss_dssp             CCHHHHHHHHTSSSCCHHHHHHHHHTT-CCTTCC-CTTTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             CCCCcHHHHHHHccCCHHHHHHHHHcC-CCCCcc-ccccCCCCHHHHHHHCCC---HHHHHHHHHcCCCCCCCCCCCCCH
Confidence            3456899999999 9999999999999 999988 6  899999999999999   999999999999999999999999


Q ss_pred             cchhhhccCCCCcChHHHHHHHHhCCCCCCcccccCCCCccccccc
Q 006236          138 VDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLSKD  183 (655)
Q Consensus       138 LhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~tpl~~l~~~  183 (655)
                      ||+|+.      .++.+++++||++|++++..|.+|.+|+..+...
T Consensus       272 Lh~A~~------~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~  311 (368)
T 3jue_A          272 LHHATI------LGHTGLACLFLKRGADLGARDSEGRDPLTIAMET  311 (368)
T ss_dssp             HHHHHH------HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             HHHHHH------cCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHC
Confidence            999997      8999999999999999999999999998665443

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.56  E-value=2.8e-16  Score=169.78  Aligned_cols=127  Identities=14%  Similarity=0.089  Sum_probs=103.3

Q ss_pred             CCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCc---cc
Q 006236           15 NKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVN---VN   91 (655)
Q Consensus        15 ~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aD---vN   91 (655)
                      ++.|+||.||..|+.+.++.+|. .|+.....+          ..+..|.||||+||..|+.++|++|+++| +|   ++
T Consensus        91 ~~~T~Lh~Aa~~G~~e~v~~Ll~-~ga~~~~~~----------~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~g-ad~~~~~  158 (376)
T 2aja_A           91 KSEVICFVAAITGCSSALDTLCL-LLTSDEIVK----------VIQAENYQAFRLAAENGHLHVLNRLCELA-PTEIMAM  158 (376)
T ss_dssp             CHHHHHHHHHHHCCHHHHHHHTT-C--CCSSCC------------CHHHHHHHHHHHHTTCHHHHHHHHHSC-TTTHHHH
T ss_pred             CcCCHHHHHHHcCCHHHHHHHHH-cCCcHHHHH----------HhccCCCCHHHHHHHcCCHHHHHHHHhCC-CCccccc
Confidence            45699999999999999988886 666221110          11346789999999999999999999999 76   23


Q ss_pred             cccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcc--cCCCCCCccchhh-hccCCCCcChHHHHHHHHhCCC
Q 006236           92 RACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNC--VDVYGNKPVDLIP-VAMKSPLHSRKRAIELLLKGDH  164 (655)
Q Consensus        92 ~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~--~D~~G~TPLhlAa-~~~~~~~~g~~eivelLL~~GA  164 (655)
                      .. +.+ .||||+|+..|+   .++|++|+++|++++.  .|..|.||||+|+ .      .|+.+++++|+++|+
T Consensus       159 i~-~~~-~TpLh~Aa~~G~---~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~------~G~~eiv~~Ll~~ga  223 (376)
T 2aja_A          159 IQ-AEN-YHAFRLAAENGH---LHVLNRLCELAPTEATAMIQAENYYAFRWAAVG------RGHHNVINFLLDCPV  223 (376)
T ss_dssp             HS-HHH-HHHHHHHHHTTC---HHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHST------TCCHHHHHHHTTSHH
T ss_pred             cC-CCC-CCHHHHHHHCCC---HHHHHHHHHcCCccchhccCCCCCCHHHHHHHH------CCCHHHHHHHHhCCC
Confidence            32 223 999999999999   9999999999999988  8999999999998 7      899999999998774

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.55  E-value=7.6e-15  Score=151.43  Aligned_cols=111  Identities=19%  Similarity=0.222  Sum_probs=100.5

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCcccccc-----CCCCChHHHHHHHc---CCCChHHHHHHHHhCCCCCcccCCCC
Q 006236           63 ERTPIMIAAMFGSVAVLKYVIETGKVNVNRAC-----GSDGFTALHCAVAG---GANSSFEVVKLLLSASADVNCVDVYG  134 (655)
Q Consensus        63 G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~-----d~~G~TpLH~Aa~~---G~~~~~eiVklLL~~GADvn~~D~~G  134 (655)
                      ..++|+.|+..|+++.++.+++.| ++++...     +..|.||||+|+..   |+   .+++++|+++|+++|.+|.+|
T Consensus       130 ~l~~l~~a~~~~d~~~~~~ll~~g-~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~---~~~v~~Ll~~ga~in~~d~~g  205 (278)
T 1dcq_A          130 KLHSLCEAVKTRDIFGLLQAYADG-VDLTEKIPLANGHEPDETALHLAVRSVDRTS---LHIVDFLVQNSGNLDKQTGKG  205 (278)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTT-CCTTSBCCCSSCSSTTCBHHHHHHHHCCTTT---HHHHHHHHHHCSCTTCCCTTC
T ss_pred             hhhhhhhHhhhcccHHHHHHHHhh-cchhhhccccccccCCCCcchHHHHhcccch---HHHHHHHHHCCCCccccCCCC
Confidence            357899999999999999999999 8854321     78899999999999   66   999999999999999999999


Q ss_pred             CCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccCCCCccccccc
Q 006236          135 NKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLSKD  183 (655)
Q Consensus       135 ~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~tpl~~l~~~  183 (655)
                      +||||+|+.      .++.+++++||++|++++.+|.+|.||+..+...
T Consensus       206 ~TpLh~A~~------~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~  248 (278)
T 1dcq_A          206 STALHYCCL------TDNAECLKLLLRGKASIEIANESGETPLDIAKRL  248 (278)
T ss_dssp             CCHHHHHHH------TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCHHHHHHH------cCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHc
Confidence            999999997      8999999999999999999999999999766543

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.54  E-value=8.9e-15  Score=162.70  Aligned_cols=111  Identities=15%  Similarity=0.205  Sum_probs=101.3

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCccccc-----cCCCCChHHHHHHH---cCCCChHHHHHHHHhCCCCCcccCCCC
Q 006236           63 ERTPIMIAAMFGSVAVLKYVIETGKVNVNRA-----CGSDGFTALHCAVA---GGANSSFEVVKLLLSASADVNCVDVYG  134 (655)
Q Consensus        63 G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~-----~d~~G~TpLH~Aa~---~G~~~~~eiVklLL~~GADvn~~D~~G  134 (655)
                      ..+.||.|+..|+.++++.||+.| +|+|..     .+..|.||||+|+.   .|+   .++|++||++|+|+|.+|.+|
T Consensus       132 ~~~~L~~A~~~g~~~~v~~ll~~g-~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~---~~~v~~Ll~~ga~vn~~d~~g  207 (497)
T 3lvq_E          132 EPQRLWTAICNRDLLSVLEAFANG-QDFGQPLPGPDAQAPEELVLHLAVKVANQAS---LPLVDFIIQNGGHLDAKAADG  207 (497)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHHHTT-CCSSSCBCCSSSCCSCBCHHHHHHHTCCTTT---HHHHHHHHHHSCCTTCCCSSS
T ss_pred             cHHHHHHHHhccCHHHHHHHHhhc-ccccCCCCCcccccccchHHHHHHHhccccc---HHHHHHHHHcCCCCCccCCCC
Confidence            347899999999999999999999 999854     26789999999977   777   999999999999999999999


Q ss_pred             CCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccCCCCccccccc
Q 006236          135 NKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLSKD  183 (655)
Q Consensus       135 ~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~tpl~~l~~~  183 (655)
                      +||||+|+.      .++.+++++||++|++++..|.+|.+|+..+...
T Consensus       208 ~TpLh~A~~------~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~  250 (497)
T 3lvq_E          208 NTALHYAAL------YNQPDCLKLLLKGRALVGTVNEAGETALDIARKK  250 (497)
T ss_dssp             CCHHHHHTT------TTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHT
T ss_pred             CcHHHHHHH------cCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            999999986      8999999999999999999999999999665443

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.52  E-value=5.2e-14  Score=124.08  Aligned_cols=92  Identities=23%  Similarity=0.311  Sum_probs=82.3

Q ss_pred             cccccCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCc
Q 006236           10 DGALYNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVN   89 (655)
Q Consensus        10 e~l~~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aD   89 (655)
                      ...+.++.++||.|+..|+.+.++.+|. .|+++|..+             ..|+||||+|+..|+.+++++|+++| ++
T Consensus        18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~i~~~d-------------~~g~tpLh~A~~~~~~~~v~~Ll~~g-a~   82 (110)
T 2zgd_A           18 SHMGSDLGKKLLEAARAGQDDEVRILMA-NGADVAAKD-------------KNGSTPLHLAARNGHLEVVKLLLEAG-AD   82 (110)
T ss_dssp             ----CCHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCCC-------------TTCCCHHHHHHHTTCHHHHHHHHHTT-CC
T ss_pred             cccCCccchHHHHHHHcCCHHHHHHHHH-cCCCCCccC-------------CCCCCHHHHHHHcCCHHHHHHHHHcC-CC
Confidence            3344678899999999999999888886 799999884             89999999999999999999999999 99


Q ss_pred             cccccCCCCChHHHHHHHcCCCChHHHHHHH
Q 006236           90 VNRACGSDGFTALHCAVAGGANSSFEVVKLL  120 (655)
Q Consensus        90 vN~~~d~~G~TpLH~Aa~~G~~~~~eiVklL  120 (655)
                      ++.. +..|.||||+|+..|+   .+++++|
T Consensus        83 ~~~~-d~~g~tpl~~A~~~~~---~~~~~~L  109 (110)
T 2zgd_A           83 VXAQ-DKFGKTAFDISIDNGN---EDLAEIL  109 (110)
T ss_dssp             TTCC-CTTSCCHHHHHHHHTC---HHHHHHH
T ss_pred             cccc-ccCCCcHHHHHHHcCC---HHHHHHh
Confidence            9998 9999999999999999   9999987

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.48  E-value=1.1e-15  Score=165.03  Aligned_cols=127  Identities=13%  Similarity=0.069  Sum_probs=106.5

Q ss_pred             CCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccc--
Q 006236           15 NKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNR--   92 (655)
Q Consensus        15 ~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~--   92 (655)
                      .+.++|+.||..|+.+.++.||. +|++++..+      +  +  +.+ .||||+||..|+.++|++|+++| ++++.  
T Consensus       127 ~~~tpL~~Aa~~G~~eiv~~Ll~-~gad~~~~~------i--~--~~~-~TpLh~Aa~~G~~eiv~~Ll~~g-a~~~~~~  193 (376)
T 2aja_A          127 ENYQAFRLAAENGHLHVLNRLCE-LAPTEIMAM------I--Q--AEN-YHAFRLAAENGHLHVLNRLCELA-PTEATAM  193 (376)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHH-SCTTTHHHH------H--S--HHH-HHHHHHHHHTTCHHHHHHHHHSC-GGGHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHh-CCCCccccc------c--C--CCC-CCHHHHHHHCCCHHHHHHHHHcC-Cccchhc
Confidence            45689999999999888887776 887632211      0  0  122 89999999999999999999999 99887  


Q ss_pred             ccCCCCChHHHHHH-HcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccc
Q 006236           93 ACGSDGFTALHCAV-AGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEE  171 (655)
Q Consensus        93 ~~d~~G~TpLH~Aa-~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~  171 (655)
                      . +..|.||||+|+ ..|+   .++|++|++.|++       |.||||+|+.      .|+.+++++|+++|++++..+.
T Consensus       194 ~-d~~g~TpL~~Aa~~~G~---~eiv~~Ll~~ga~-------~~taL~~Aa~------~g~~evv~lL~~~ga~~~~~~~  256 (376)
T 2aja_A          194 I-QAENYYAFRWAAVGRGH---HNVINFLLDCPVM-------LAYAEIHEFE------YGEKYVNPFIARHVNRLKEMHD  256 (376)
T ss_dssp             H-HHHHHHHHHHHHSTTCC---HHHHHHHTTSHHH-------HHHHHHCTTT------TTTTTHHHHHHHHHHHHHHHHT
T ss_pred             c-CCCCCCHHHHHHHHCCC---HHHHHHHHhCCCc-------cchHHHHHHH------CCCHHHHHHHHhcCcccccccH
Confidence            6 788999999999 9999   9999999998753       8899999986      8999999999999999886653

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A

Probab=98.97  E-value=1.8e-10  Score=96.50  Aligned_cols=61  Identities=36%  Similarity=0.784  Sum_probs=29.2

Q ss_pred             CCCCcCCCCCc-cCCCCCCCCcccccCCcccccc---CCcccccccccCC---CCCCCCC-CCCCCCCCC
Q 006236          247 YPYTCVPCPEF-RKGACPKGDGCEYAHGVFESWL---HPAQYRTRLCKDE---IGCARKV-CFFAHKPEE  308 (655)
Q Consensus       247 y~Ys~~~CP~~-rkg~C~~Gd~C~yaH~~~E~~~---HP~~ykt~~C~~~---~~C~~~~-C~faH~~~e  308 (655)
                      -.|++.+|+.| +.|.|.+|+.|.|+|+..|+..   || .|+|.+|+.|   |.|++|. |.|+|+.+|
T Consensus         8 ~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~~~~-~~k~~~C~~f~~~G~C~~G~~C~f~H~~~e   76 (77)
T 1m9o_A            8 SRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQANRHP-KYKTELCHKFKLQGRCPYGSRCHFIHNPTE   76 (77)
T ss_dssp             SCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC----------------------------------
T ss_pred             CCccchhCHHhhhCCCcCCCCCccCCCCChhhccccccc-cccCCcccchhhCcCCCCcCcCCCCCCCCC
Confidence            35889999999 5899999999999999998874   45 7999999976   8999885 999999876

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A

Probab=98.61  E-value=5.4e-09  Score=86.30  Aligned_cols=61  Identities=26%  Similarity=0.683  Sum_probs=56.3

Q ss_pred             cCCCCCccCCCCCCCC-cccccCCccccccCCcccccccccCC--CCCCCCCCCCCCCCCCccc
Q 006236          251 CVPCPEFRKGACPKGD-GCEYAHGVFESWLHPAQYRTRLCKDE--IGCARKVCFFAHKPEELRP  311 (655)
Q Consensus       251 ~~~CP~~rkg~C~~Gd-~C~yaH~~~E~~~HP~~ykt~~C~~~--~~C~~~~C~faH~~~elr~  311 (655)
                      ...|..|.+|.|.+|+ .|.|+|...+.+.++...++..|.+|  |.|.++.|.|+|.+.+|+.
T Consensus         6 ~~vC~~f~~G~C~rg~~~C~f~H~~~~~~~~~~~~~~~vC~~flkG~C~r~~C~y~H~~~~L~~   69 (70)
T 3d2q_A            6 LEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSREKCKYFHPPAHLQA   69 (70)
T ss_dssp             EEBCHHHHTTCCSSCTTTCSSBCCCTTSCCBTTTTEEEBCHHHHTTCCCCTTCCSBCCCHHHHC
T ss_pred             chhCHHHhcCCCCCCCCCCCCccCcccccccccCCcceeccccCcCCCCCCCcCeeCCHHHHhc
Confidence            3579999999999999 59999999999999888999999999  9999999999999998874

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.07  E-value=2.8e-07  Score=80.94  Aligned_cols=62  Identities=27%  Similarity=0.687  Sum_probs=55.6

Q ss_pred             CcCCCCCccCCCCCCCC-cccccCCccccccCCcccccccccCC--CCCCCCCCCCCCCCCCccc
Q 006236          250 TCVPCPEFRKGACPKGD-GCEYAHGVFESWLHPAQYRTRLCKDE--IGCARKVCFFAHKPEELRP  311 (655)
Q Consensus       250 s~~~CP~~rkg~C~~Gd-~C~yaH~~~E~~~HP~~ykt~~C~~~--~~C~~~~C~faH~~~elr~  311 (655)
                      +...|..|.+|.|.+|+ .|.|+|...+....+...++..|.+|  |.|.++.|.|.|...+|+.
T Consensus        19 k~~VCr~FlrG~C~rgd~~C~FsH~~~~~~~~~~~~~~~vC~~flkG~C~r~~C~y~H~~~~l~~   83 (98)
T 2e5s_A           19 KLEVCREFQRGNCARGETDCRFAHPADSTMIDTSDNTVTVCMDYIKGRCMREKCKYFHPPAHLQA   83 (98)
T ss_dssp             EEEBCSHHHHTCCSSHHHHCSSBCCSSCCSCCTTTCEEEBCHHHHHTCCCCTTCCSBCCCHHHHH
T ss_pred             hhhhhHHHhcCcCCCCCCCCCCcCCchhccccccCCccccchhhccCCCCCCCcCccCChHHHHH
Confidence            34589999999999999 89999999888777777899999999  9999999999999988874

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1

Probab=97.99  E-value=3.6e-06  Score=73.88  Aligned_cols=49  Identities=31%  Similarity=0.680  Sum_probs=42.9

Q ss_pred             CCCcCCCCCccCCCCCCCCcccccCCccccccCCcccccccccCC---CCCCCC-CCCCCCCCCC
Q 006236          248 PYTCVPCPEFRKGACPKGDGCEYAHGVFESWLHPAQYRTRLCKDE---IGCARK-VCFFAHKPEE  308 (655)
Q Consensus       248 ~Ys~~~CP~~rkg~C~~Gd~C~yaH~~~E~~~HP~~ykt~~C~~~---~~C~~~-~C~faH~~~e  308 (655)
                      .++...|..|..|.|.+|+.|.|+|+            +.+|++|   |.|++| .|.|+|....
T Consensus        10 ~~k~~lC~~f~~G~C~~G~~C~f~H~------------~~~C~~f~~~G~C~~G~~C~f~H~~~~   62 (98)
T 2cqe_A           10 PKKRELCKFYITGFCARAENCPYMHG------------DFPCKLYHTTGNCINGDDCMFSHDPLT   62 (98)
T ss_dssp             SCCCSBCTTTTTTCCSCSTTCSSBSS------------SSBCSHHHHTSCCSSCTTCSSBCCCCC
T ss_pred             CCCCccCcccccCcCCCCCCCCCCCC------------CCcCcCcccCCcCCCCCCCcccCCCCc
Confidence            36778999999999999999999999            6789987   999987 5999998643

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.86  E-value=7.8e-06  Score=68.51  Aligned_cols=57  Identities=30%  Similarity=0.497  Sum_probs=47.2

Q ss_pred             CCCCcCCCCCccCCCCCCCCcccccCCccccccCCcccccccccCC---CCCCCCCCCCCCCCCCcc
Q 006236          247 YPYTCVPCPEFRKGACPKGDGCEYAHGVFESWLHPAQYRTRLCKDE---IGCARKVCFFAHKPEELR  310 (655)
Q Consensus       247 y~Ys~~~CP~~rkg~C~~Gd~C~yaH~~~E~~~HP~~ykt~~C~~~---~~C~~~~C~faH~~~elr  310 (655)
                      ..++.+.|..|.+|.|.+|+.|.|+|...+       -++..|++|   |.|.+..|.|+|...+.+
T Consensus         6 ~~~k~~~C~~fl~G~C~~G~~C~fsH~~~~-------~~~~~C~~f~~~G~C~~~~C~f~H~~~~~~   65 (77)
T 2d9n_A            6 SGEKTVVCKHWLRGLCKKGDQCEFLHEYDM-------TKMPECYFYSKFGECSNKECPFLHIDPESK   65 (77)
T ss_dssp             SCCTTSBCHHHHTTCCSCTTSSSSBCSCCT-------TTSCBCHHHHHTCCCCCSSCSSBCCCTTSS
T ss_pred             CCCcceeCHhHccCcCCCCCCCCCcccccc-------CcCCCCcccCCCCccCCCCeeccCCCcccc
Confidence            446778999999999999999999999653       256679998   999966799999976544

>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.77  E-value=2.4e-06  Score=69.58  Aligned_cols=27  Identities=30%  Similarity=0.497  Sum_probs=17.3

Q ss_pred             ccccccCC--CCCCCCC-CCCCCCCCCccc
Q 006236          285 RTRLCKDE--IGCARKV-CFFAHKPEELRP  311 (655)
Q Consensus       285 kt~~C~~~--~~C~~~~-C~faH~~~elr~  311 (655)
                      ++++|+.|  |.|++|. |.|||+.+|||.
T Consensus        19 k~~LC~~~~~G~C~~G~~C~FAHG~~ELr~   48 (69)
T 2d9m_A           19 YFSICDRYMNGTCPEGNSCKFAHGNAELHE   48 (69)
T ss_dssp             CCSBCHHHHHSCCSSCSSCSSBSSHHHHHH
T ss_pred             CcccCcccCcCCCCCCCccCCcCCHHHHhh
Confidence            44666665  6666663 666666666664

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}

Probab=97.60  E-value=1.6e-05  Score=65.82  Aligned_cols=55  Identities=31%  Similarity=0.540  Sum_probs=44.7

Q ss_pred             CCcCCCCCccCCCCCCCCcccccCCccccccCCcccccccccCC---CCCCCCCCCCCCCCCCcc
Q 006236          249 YTCVPCPEFRKGACPKGDGCEYAHGVFESWLHPAQYRTRLCKDE---IGCARKVCFFAHKPEELR  310 (655)
Q Consensus       249 Ys~~~CP~~rkg~C~~Gd~C~yaH~~~E~~~HP~~ykt~~C~~~---~~C~~~~C~faH~~~elr  310 (655)
                      .+.+.|..|.+|.|.+|+.|.|+|....       .++..|++|   |.|.+..|.|.|...+.|
T Consensus        14 ~k~~vCk~fl~G~C~~G~~C~fsH~~~~-------~~~~~C~~f~~~G~C~~~~C~y~H~~p~~k   71 (72)
T 2rhk_C           14 EKTVVCKHWLRGLCKKGDQCEFLHEYDM-------TKMSECYFYSKFGECSNKECPFLHIDPESK   71 (72)
T ss_dssp             CCCSBCHHHHTTCCCCGGGSSSBCSCCT-------TSCCBCHHHHHHSCCSBTTCCSBCCCCC--
T ss_pred             CcCeeCHHHhcCCCCCCCCCCCcccccc-------ccCCcccccCCCCCCCCCCeeccCCCcccc
Confidence            5567899999999999999999998432       367789997   899997799999876543

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}

Probab=97.37  E-value=5e-05  Score=64.53  Aligned_cols=66  Identities=30%  Similarity=0.628  Sum_probs=51.1

Q ss_pred             CcCCCCCccCCCCCCCC-cccccCCccccccCCcccccccccCC--CCCCCCCCCCCCCCCCcccCcCCCC
Q 006236          250 TCVPCPEFRKGACPKGD-GCEYAHGVFESWLHPAQYRTRLCKDE--IGCARKVCFFAHKPEELRPVYASTG  317 (655)
Q Consensus       250 s~~~CP~~rkg~C~~Gd-~C~yaH~~~E~~~HP~~ykt~~C~~~--~~C~~~~C~faH~~~elr~~~~~~~  317 (655)
                      +...|..|.+|.|.+|| .|.|+|........  .-+...|.+|  |.|.++.|.|.|.+.+|...+-.+|
T Consensus         8 ~~~VCr~FlrG~C~r~d~~C~f~H~~~~~~~~--~~~~~vC~dflkG~C~r~~C~y~H~~~~l~~~~~i~g   76 (83)
T 3d2n_A            8 TLEVCREFQRGTCSRPDTECKFAHPSKSCQVE--NGRVIACFDSLKGRCSRENCKYLHPPPHLKTQLEING   76 (83)
T ss_dssp             EEEBCTTGGGTCCCSCTTTCSSBCCCTTCCEE--TTEEECCHHHHTTCCCCSSCSSCCCCHHHHHHHHHHT
T ss_pred             cchhcHHHhcCCCCCCCCCCCCcCCCcccccc--CCceeehhHhhhccccCCCcceeCChHHHHHHHhcCC
Confidence            34589999999999997 99999996543221  2355679999  9999999999999988775444333

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}

Probab=97.06  E-value=0.00011  Score=63.21  Aligned_cols=62  Identities=29%  Similarity=0.629  Sum_probs=49.2

Q ss_pred             CcCCCCCccCCCCCCCC-cccccCCccccccCCcccccccccCC--CCCCCCCCCCCCCCCCcccCc
Q 006236          250 TCVPCPEFRKGACPKGD-GCEYAHGVFESWLHPAQYRTRLCKDE--IGCARKVCFFAHKPEELRPVY  313 (655)
Q Consensus       250 s~~~CP~~rkg~C~~Gd-~C~yaH~~~E~~~HP~~ykt~~C~~~--~~C~~~~C~faH~~~elr~~~  313 (655)
                      +...|++|.+|.|.+|+ .|.|+|........+  -+...|.+|  |.|.+..|.|.|.+..|....
T Consensus        16 ~~~VCrdFlrG~C~r~d~~CrfsH~~~~~~v~~--~~~~vC~dflkG~C~r~~Cky~H~~~hl~~~~   80 (89)
T 2rpp_A           16 TLEVCRQFQRGTCSRSDEECKFAHPPKSCQVEN--GRVIACFDSLKGRCSRENCKYLHPPTHLKTQL   80 (89)
T ss_dssp             EECBCHHHHHTCCCCCTTTSSSBCCCSSSCCBT--TBEEBCHHHHHTCCCCTTCCSBCCCHHHHHHH
T ss_pred             hhhhchHHhcCCCCCCCCCCCCcCCCccccccC--CceeeehhhhhCcCCCCCcceecCHHHHHHHH
Confidence            34589999999999998 999999865432222  256679999  999999999999988776433

>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.05  E-value=5.9e-05  Score=61.43  Aligned_cols=40  Identities=30%  Similarity=0.699  Sum_probs=33.5

Q ss_pred             CCCCCccCCCCCCCCcccccCCcccccc---CCcccccccccC
Q 006236          252 VPCPEFRKGACPKGDGCEYAHGVFESWL---HPAQYRTRLCKD  291 (655)
Q Consensus       252 ~~CP~~rkg~C~~Gd~C~yaH~~~E~~~---HP~~ykt~~C~~  291 (655)
                      .+|..|.+|.|++|+.|.||||..|+..   .+...++++|+-
T Consensus        21 ~LC~~~~~G~C~~G~~C~FAHG~~ELr~~~~R~~~~k~k~~~A   63 (69)
T 2d9m_A           21 SICDRYMNGTCPEGNSCKFAHGNAELHEWEERRDALKMKLNKA   63 (69)
T ss_dssp             SBCHHHHHSCCSSCSSCSSBSSHHHHHHHHHHHHHHTTTCCSC
T ss_pred             ccCcccCcCCCCCCCccCCcCCHHHHhhHHHHHHHHHHHHHHH
Confidence            7999998899999999999999999854   355567777764

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A

Probab=96.91  E-value=0.00043  Score=57.40  Aligned_cols=31  Identities=39%  Similarity=0.714  Sum_probs=27.7

Q ss_pred             cccccccccCC---CCCCCCC-CCCCCCCCCcccC
Q 006236          282 AQYRTRLCKDE---IGCARKV-CFFAHKPEELRPV  312 (655)
Q Consensus       282 ~~ykt~~C~~~---~~C~~~~-C~faH~~~elr~~  312 (655)
                      ..|||++|+.|   |.|++|. |.|+|+.+|+|.+
T Consensus         8 ~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~   42 (77)
T 1m9o_A            8 SRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQA   42 (77)
T ss_dssp             SCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGT
T ss_pred             CCccchhCHHhhhCCCcCCCCCccCCCCChhhccc
Confidence            47999999988   8899885 9999999999975

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=90.67  E-value=0.084  Score=43.75  Aligned_cols=27  Identities=26%  Similarity=0.370  Sum_probs=23.5

Q ss_pred             ccccccccCC--CCCCCCC-CCCCCCCCCc
Q 006236          283 QYRTRLCKDE--IGCARKV-CFFAHKPEEL  309 (655)
Q Consensus       283 ~ykt~~C~~~--~~C~~~~-C~faH~~~el  309 (655)
                      -+|+.+|++|  |.|.++. |.|+|.....
T Consensus         7 ~~k~~~C~~fl~G~C~~G~~C~fsH~~~~~   36 (77)
T 2d9n_A            7 GEKTVVCKHWLRGLCKKGDQCEFLHEYDMT   36 (77)
T ss_dssp             CCTTSBCHHHHTTCCSCTTSSSSBCSCCTT
T ss_pred             CCcceeCHhHccCcCCCCCCCCCccccccC
Confidence            4799999999  9999885 9999998764

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1

Probab=89.56  E-value=0.17  Score=44.01  Aligned_cols=23  Identities=35%  Similarity=0.518  Sum_probs=21.1

Q ss_pred             ccccccccCC--CCCCCCC-CCCCCC
Q 006236          283 QYRTRLCKDE--IGCARKV-CFFAHK  305 (655)
Q Consensus       283 ~ykt~~C~~~--~~C~~~~-C~faH~  305 (655)
                      .+|+.+|++|  |.|.+|. |.|+|.
T Consensus        10 ~~k~~lC~~f~~G~C~~G~~C~f~H~   35 (98)
T 2cqe_A           10 PKKRELCKFYITGFCARAENCPYMHG   35 (98)
T ss_dssp             SCCCSBCTTTTTTCCSCSTTCSSBSS
T ss_pred             CCCCccCcccccCcCCCCCCCCCCCC
Confidence            4899999999  8999985 999999

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}

Probab=88.65  E-value=0.16  Score=41.61  Aligned_cols=29  Identities=28%  Similarity=0.430  Sum_probs=24.2

Q ss_pred             CCcccccccccCC--CCCCCC-CCCCCCCCCC
Q 006236          280 HPAQYRTRLCKDE--IGCARK-VCFFAHKPEE  308 (655)
Q Consensus       280 HP~~ykt~~C~~~--~~C~~~-~C~faH~~~e  308 (655)
                      |...+++..|++|  |.|.+| .|.|+|..+.
T Consensus        10 ~~~~~k~~vCk~fl~G~C~~G~~C~fsH~~~~   41 (72)
T 2rhk_C           10 HMSGEKTVVCKHWLRGLCKKGDQCEFLHEYDM   41 (72)
T ss_dssp             SSSCCCCSBCHHHHTTCCCCGGGSSSBCSCCT
T ss_pred             cCCCCcCeeCHHHhcCCCCCCCCCCCcccccc
Confidence            3456789999999  999998 5999999764

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A

Probab=88.36  E-value=0.14  Score=41.72  Aligned_cols=26  Identities=31%  Similarity=0.653  Sum_probs=22.2

Q ss_pred             ccccccCC--CCCCCC--CCCCCCCCCCcc
Q 006236          285 RTRLCKDE--IGCARK--VCFFAHKPEELR  310 (655)
Q Consensus       285 kt~~C~~~--~~C~~~--~C~faH~~~elr  310 (655)
                      |...|++|  |.|.++  .|.|+|..++++
T Consensus         5 k~~vC~~f~~G~C~rg~~~C~f~H~~~~~~   34 (70)
T 3d2q_A            5 RLEVCREYQRGNCNRGENDCRFAHPADSTM   34 (70)
T ss_dssp             EEEBCHHHHTTCCSSCTTTCSSBCCCTTSC
T ss_pred             cchhCHHHhcCCCCCCCCCCCCccCccccc
Confidence            45679999  999988  599999998865

>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}

Probab=85.30  E-value=0.17  Score=42.36  Aligned_cols=22  Identities=27%  Similarity=0.751  Sum_probs=16.9

Q ss_pred             cccccCCCCCCCCCCCCCCCCC
Q 006236          286 TRLCKDEIGCARKVCFFAHKPE  307 (655)
Q Consensus       286 t~~C~~~~~C~~~~C~faH~~~  307 (655)
                      ...|+++..|.+..|.|.|-..
T Consensus        52 ~~~Crf~~~C~n~~C~F~Hp~g   73 (80)
T 2lhn_A           52 NEDCRFGVNCKNIYCLFRHPPG   73 (80)
Confidence            3578888888887899988543

>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1

Probab=83.63  E-value=0.36  Score=36.55  Aligned_cols=24  Identities=21%  Similarity=0.290  Sum_probs=17.8

Q ss_pred             cccccccCC---CCCCCCC-CCCCCCCC
Q 006236          284 YRTRLCKDE---IGCARKV-CFFAHKPE  307 (655)
Q Consensus       284 ykt~~C~~~---~~C~~~~-C~faH~~~  307 (655)
                      .++..|+.|   |.|++|. |.|.|+.+
T Consensus        18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiD   45 (50)
T 2fc6_A           18 HPTSICDNFSAYGWCPLGPQCPQSHDIS   45 (50)
T ss_dssp             CCSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred             cccchhhhccccccCCCCCCCCccccCC
Confidence            567778877   8888774 88888764

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=83.27  E-value=0.3  Score=42.47  Aligned_cols=28  Identities=29%  Similarity=0.567  Sum_probs=24.2

Q ss_pred             ccccccccCC--CCCCCC--CCCCCCCCCCcc
Q 006236          283 QYRTRLCKDE--IGCARK--VCFFAHKPEELR  310 (655)
Q Consensus       283 ~ykt~~C~~~--~~C~~~--~C~faH~~~elr  310 (655)
                      -.|...|++|  |.|.++  .|.|+|.+++++
T Consensus        17 ~~k~~VCr~FlrG~C~rgd~~C~FsH~~~~~~   48 (98)
T 2e5s_A           17 TDKLEVCREFQRGNCARGETDCRFAHPADSTM   48 (98)
T ss_dssp             SSEEEBCSHHHHTCCSSHHHHCSSBCCSSCCS
T ss_pred             hhhhhhhHHHhcCcCCCCCCCCCCcCCchhcc
Confidence            4577789999  999999  499999998875

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}

Probab=82.45  E-value=0.65  Score=39.09  Aligned_cols=26  Identities=27%  Similarity=0.593  Sum_probs=21.9

Q ss_pred             cccccccCC--CCCCCC--CCCCCCCCCCc
Q 006236          284 YRTRLCKDE--IGCARK--VCFFAHKPEEL  309 (655)
Q Consensus       284 ykt~~C~~~--~~C~~~--~C~faH~~~el  309 (655)
                      .+...|++|  |.|.++  .|.|+|.+..+
T Consensus         7 ~~~~VCr~FlrG~C~r~d~~C~f~H~~~~~   36 (83)
T 3d2n_A            7 LTLEVCREFQRGTCSRPDTECKFAHPSKSC   36 (83)
T ss_dssp             GEEEBCTTGGGTCCCSCTTTCSSBCCCTTC
T ss_pred             ccchhcHHHhcCCCCCCCCCCCCcCCCccc
Confidence            456679999  999998  79999998754

>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}

Probab=83.06  E-value=0.26  Score=41.28  Aligned_cols=37  Identities=30%  Similarity=0.769  Sum_probs=29.0

Q ss_pred             CCCCCcccccCCccccccCCcccccccccCCCCCCCCCCCCCCCCCCc
Q 006236          262 CPKGDGCEYAHGVFESWLHPAQYRTRLCKDEIGCARKVCFFAHKPEEL  309 (655)
Q Consensus       262 C~~Gd~C~yaH~~~E~~~HP~~ykt~~C~~~~~C~~~~C~faH~~~el  309 (655)
                      |.+ ..|.|.|...          ...|+++.+|.+..|.|+|-..+.
T Consensus        18 Ctn-~~C~f~Hp~~----------~~~Cr~g~~C~~~~C~f~HP~~~~   54 (80)
T 2lhn_A           18 CTN-KRCKYRHARS----------HIMCREGANCTRIDCLFGHPINED   54 (80)
Confidence            666 7899998631          348999999999889999974443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	655
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-15
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	7e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	7e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	9e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-08
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-04
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	0.003
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-13
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	7e-09
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-07
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-05
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	7e-04
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-13
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	9e-07
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-06
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-04
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-04
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-09
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-08
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-09
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-05
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-04
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-08
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	6e-07
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-07
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.002
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	6e-07
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	7e-07
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-06
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	0.001
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-06
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	7e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	8e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	7e-06
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	7e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	2e-05
d1rgoa1	36	g.66.1.1 (A:151-186) Butyrate response factor 2 (T	1e-04
d1rgoa1	36	g.66.1.1 (A:151-186) Butyrate response factor 2 (T	0.001
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-04
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	0.001
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	7e-04
d1m9oa_	40	g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475	0.001
d1m9oa_	40	g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475	0.002
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	0.002
d1rgoa2	34	g.66.1.1 (A:187-220) Butyrate response factor 2 (T	0.004

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.0 bits (183), Expect = 6e-15
 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 5/73 (6%)

Query: 65  TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
           TP+ +A+  G + ++K +++ G  + N        T LH A   G     EV K LL   
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRG-ASPN-VSNVKVETPLHMAARAG---HTEVAKYLLQNK 56

Query: 125 ADVNCVDVYGNKP 137
           A VN        P
Sbjct: 57  AKVNAKAKDDQTP 69

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.1 bits (134), Expect = 7e-09
 Identities = 28/100 (28%), Positives = 42/100 (42%), Gaps = 18/100 (18%)

Query: 38  EKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSD 97
           ++G   +  +              +  TP+ +AA  G   V KY+++     VN A   D
Sbjct: 21  QRGASPNVSNV-------------KVETPLHMAARAGHTEVAKYLLQNK-AKVN-AKAKD 65

Query: 98  GFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKP 137
             T LHCA   G      +VKLLL  +A+ N     G+ P
Sbjct: 66  DQTPLHCAARIG---HTNMVKLLLENNANPNLATTAGHTP 102

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (133), Expect = 7e-09
 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 2/71 (2%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
            +P+  AA  G   ++  +++ G  + N    SDG T L  A   G  S  +V+K++   
Sbjct: 331 YSPLHQAAQQGHTDIVTLLLKNG-ASPN-EVSSDGTTPLAIAKRLGYISVTDVLKVVTDE 388

Query: 124 SADVNCVDVYG 134
           ++ V   D + 
Sbjct: 389 TSFVLVSDKHR 399

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (133), Expect = 9e-09
 Identities = 23/123 (18%), Positives = 50/123 (40%), Gaps = 15/123 (12%)

Query: 58  KMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVV 117
                  TP+ +A+ +G++ ++K++++        A    G++ LH A   G     ++V
Sbjct: 292 ATTRMGYTPLHVASHYGNIKLVKFLLQ--HQADVNAKTKLGYSPLHQAAQQG---HTDIV 346

Query: 118 KLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLL----KGDHTIFEEEELV 173
            LLL   A  N V   G  P+ +   A +          ++L     +    +  ++  +
Sbjct: 347 TLLLKNGASPNEVSSDGTTPLAI---AKR---LGYISVTDVLKVVTDETSFVLVSDKHRM 400

Query: 174 NIP 176
           + P
Sbjct: 401 SFP 403

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (126), Expect = 5e-08
 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 5/74 (6%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
            TP+ +AA +G V V + ++E    + N A G +G T LH AV      + ++VKLLL  
Sbjct: 133 FTPLHVAAKYGKVRVAELLLERD-AHPN-AAGKNGLTPLHVAVHHN---NLDIVKLLLPR 187

Query: 124 SADVNCVDVYGNKP 137
               +     G  P
Sbjct: 188 GGSPHSPAWNGYTP 201

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 2e-04
 Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 5/73 (6%)

Query: 65  TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
           TP+ +AA  G   ++  ++   K          G T LH     G      V  +L+   
Sbjct: 233 TPLHLAAQEGHAEMVALLLS--KQANGNLGNKSGLTPLHLVAQEG---HVPVADVLIKHG 287

Query: 125 ADVNCVDVYGNKP 137
             V+     G  P
Sbjct: 288 VMVDATTRMGYTP 300

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 0.003
 Identities = 23/110 (20%), Positives = 34/110 (30%), Gaps = 34/110 (30%)

Query: 62  EERTPIMIAAMFGSVAVLKYVIE-------------------------------TGKVNV 90
           +++TP+  AA  G   ++K ++E                                 K   
Sbjct: 65  DDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEAS 124

Query: 91  NRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDL 140
                  GFT LH A   G      V +LLL   A  N     G  P+ +
Sbjct: 125 QACMTKKGFTPLHVAAKYG---KVRVAELLLERDAHPNAAGKNGLTPLHV 171

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.5 bits (166), Expect = 3e-13
 Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 4/69 (5%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
           +TP+++A     + +++ ++E   + +N    SDG TAL  AV        ++ +LL   
Sbjct: 220 KTPLILAVEKKHLGLVQRLLEQEHIEIN-DTDSDGKTALLLAVELK---LKKIAELLCKR 275

Query: 124 SADVNCVDV 132
            A  +C D+
Sbjct: 276 GASTDCGDL 284

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.4 bits (132), Expect = 7e-09
 Identities = 28/141 (19%), Positives = 53/141 (37%), Gaps = 9/141 (6%)

Query: 21  LELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLK 80
              +A        + + ++G +V+        +   +K G    T +M AA  G V VLK
Sbjct: 109 FMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGG---ATALMDAAEKGHVEVLK 165

Query: 81  YVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDL 140
            +++    +VN          +H  ++   +    +  LLL   ADVN     G  P+  
Sbjct: 166 ILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPL-- 223

Query: 141 IPVAMKSPLHSRKRAIELLLK 161
               + +        ++ LL+
Sbjct: 224 ----ILAVEKKHLGLVQRLLE 240

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (118), Expect = 3e-07
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 4/60 (6%)

Query: 62  EERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLL 121
           E+   ++ A     V +++ ++E G  NVN      G+T LH AV        ++V+LLL
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGG-ANVNFQEEEGGWTPLHNAVQMS---REDIVELLL 59

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 5e-05
 Identities = 26/112 (23%), Positives = 39/112 (34%), Gaps = 12/112 (10%)

Query: 48  FWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIE--------TGKVNVNRACGSDGF 99
            +  +     +  F   T  M AA++G V  LK++ +                     G 
Sbjct: 90  LFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGA 149

Query: 100 TALHCAVAGGANSSFEVVKLLLS-ASADVNCVDVYGNKPVDLIPVAMKSPLH 150
           TAL  A   G     EV+K+LL    ADVN  D  G   +    ++      
Sbjct: 150 TALMDAAEKG---HVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDV 198

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 7e-04
 Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 13/54 (24%)

Query: 97  DGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLH 150
           +    L  AV        ++V+ LL   A+VN  +  G            +PLH
Sbjct: 4   EDNHLLIKAVQNE---DVDLVQQLLEGGANVNFQEEEGG----------WTPLH 44

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 68.8 bits (167), Expect = 4e-13
 Identities = 22/147 (14%), Positives = 43/147 (29%), Gaps = 8/147 (5%)

Query: 13  LYNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAM 72
           L  K +I + L  + ++   ++ +       +  +         K  G +      +AA+
Sbjct: 42  LSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKK--GIKSEVICFVAAI 99

Query: 73  FGSVAVLKYVIE--TGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCV 130
            G  + L  +    T    V     ++ + A   A   G      V+  L   +      
Sbjct: 100 TGCSSALDTLCLLLTSDEIVK-VIQAENYQAFRLAAENG---HLHVLNRLCELAPTEIMA 155

Query: 131 DVYGNKPVDLIPVAMKSPLHSRKRAIE 157
            +           A    LH   R  E
Sbjct: 156 MIQAENYHAFRLAAENGHLHVLNRLCE 182

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 49.1 bits (116), Expect = 9e-07
 Identities = 16/105 (15%), Positives = 28/105 (26%), Gaps = 6/105 (5%)

Query: 62  EERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLL 121
           E      +AA  G + VL  + E     +     ++ + A   A     N    V+  L 
Sbjct: 125 ENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAA---ENGHLHVLNRLC 181

Query: 122 SASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTI 166
             +       +           A+          I  LL     +
Sbjct: 182 ELAPTEATAMIQAENYYAFRWAAVG---RGHHNVINFLLDCPVML 223

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 48.0 bits (113), Expect = 2e-06
 Identities = 17/133 (12%), Positives = 35/133 (26%), Gaps = 22/133 (16%)

Query: 14  YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMF 73
           Y     L  +      + F+  I      +               + ++E   I +    
Sbjct: 10  YENDPQLRLIPWILWENLFQHFISANELSLM-------------TLSYKEAIHIFLPGTK 56

Query: 74  GSVAVLKYVIETG-KVNVNR--------ACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
               V + +       N N           G         A   G +S+ + + LLL++ 
Sbjct: 57  NMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSD 116

Query: 125 ADVNCVDVYGNKP 137
             V  +     + 
Sbjct: 117 EIVKVIQAENYQA 129

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 40.6 bits (94), Expect = 4e-04
 Identities = 14/99 (14%), Positives = 30/99 (30%), Gaps = 4/99 (4%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETG-KVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLS 122
                +AA  G + VL  + E             + +     AV  G      V+  LL 
Sbjct: 162 YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRG---HHNVINFLLD 218

Query: 123 ASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLK 161
               +   +++  +  +       +   +R + +    K
Sbjct: 219 CPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFK 257

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 40.6 bits (94), Expect = 4e-04
 Identities = 17/126 (13%), Positives = 28/126 (22%), Gaps = 29/126 (23%)

Query: 58  KMGFEERTPIMIAAMFGSVAVLKYVIETGKVN------------------VNRACGSDGF 99
                     +    +G   V  ++                         V ++    GF
Sbjct: 218 DCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGF 277

Query: 100 TALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLH-----SRKR 154
             L   +        + ++ LLS              P   IP      L        + 
Sbjct: 278 YMLRNLIRRNDEVLLDDIRFLLSIPGIKA------LAPTATIPGDANELLRLALRLGNQG 331

Query: 155 AIELLL 160
           A  LLL
Sbjct: 332 ACALLL 337

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 56.7 bits (135), Expect = 2e-09
 Identities = 35/240 (14%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 65  TPIMIA-AMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLL-- 121
           +PI +     GS A+ + +       VN        T LH   +     S E  + L+  
Sbjct: 2   SPIKLHTEAAGSYAITEPITRES---VNIIDPRHNRTVLHWIASNS---SAEKSEDLIVH 55

Query: 122 ------SASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNI 175
                 +A ADVN +D   N P+ L  +A +  L              + +    +    
Sbjct: 56  EAKECIAAGADVNAMDCDENTPLMLAVLARRRRLV------------AYLMKAGADPTIY 103

Query: 176 PVPQLSKDGTEKKEYPIDVSLPDINNGVYGTDDFRMYAFKIKPCSRAYSHDWTECPFVHP 235
              + S            + +  +N+     D   +    +        ++  +      
Sbjct: 104 NKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAK 163

Query: 236 GENARRRDPRKYPYTCVPCPEFRKGACPKGDGCEYAHGVFESWLHPAQYRTRLCKDEIGC 295
                +     Y        E  KG        + ++     +L   +   +  +DE G 
Sbjct: 164 -LLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGK 222

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 53.6 bits (127), Expect = 2e-08
 Identities = 22/98 (22%), Positives = 40/98 (40%), Gaps = 10/98 (10%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
           RT +  AA   ++ ++KY++     N ++    DG T +  A   G     EVV  L+  
Sbjct: 188 RTALHYAAQVSNMPIVKYLVGEKGSNKDKQD-EDGKTPIMLAAQEG---RIEVVMYLIQQ 243

Query: 124 SADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLK 161
            A V  VD   +    L   A     ++    +++  +
Sbjct: 244 GASVEAVDATDHTARQL---AQA---NNHHNIVDIFDR 275

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 56.3 bits (134), Expect = 3e-09
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 5/76 (6%)

Query: 65  TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
           T + +AA  G   VLK  +   + +VN     DG+T LH A   G     E  ++L+   
Sbjct: 201 TALHVAAAKGYTEVLKL-LIQARYDVN-IKDYDGWTPLHAAAHWG---KEEACRILVENL 255

Query: 125 ADVNCVDVYGNKPVDL 140
            D+  V+  G    D+
Sbjct: 256 CDMEAVNKVGQTAFDV 271

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 44.7 bits (104), Expect = 2e-05
 Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 9/65 (13%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
            TP+  AA +G     + ++E    ++  A    G TA   A         +++  L   
Sbjct: 233 WTPLHAAAHWGKEEACRILVENL-CDME-AVNKVGQTAFDVA-------DEDILGYLEEL 283

Query: 124 SADVN 128
               N
Sbjct: 284 QKKQN 288

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 41.6 bits (96), Expect = 2e-04
 Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 3/41 (7%)

Query: 97  DGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKP 137
           D       A + G     E V  LL   AD+N  +V G   
Sbjct: 39  DDGAVFLAACSSG---DTEEVLRLLERGADINYANVDGLTA 76

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.9 bits (128), Expect = 2e-08
 Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 6/80 (7%)

Query: 62  EERTPIMIAAMFGSVAVLKYVIETGKV--NVNRACGSDGFTALHCAVAGGANSSFEVVKL 119
           E+ +           ++L+ +     +   +N A  S+G T L+ A   G   +  +V  
Sbjct: 222 EKESKPNDKNGERKDSILENLDLKWIIANMLN-AQDSNGDTCLNIAARLG---NISIVDA 277

Query: 120 LLSASADVNCVDVYGNKPVD 139
           LL   AD    +  G +PVD
Sbjct: 278 LLDYGADPFIANKSGLRPVD 297

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.3 bits (116), Expect = 6e-07
 Identities = 12/72 (16%), Positives = 24/72 (33%), Gaps = 3/72 (4%)

Query: 60  GFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKL 119
           G          +    +  +       ++N+N      G T LH   +     + E+VK 
Sbjct: 69  GGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIA---NLELVKH 125

Query: 120 LLSASADVNCVD 131
           L+   ++    D
Sbjct: 126 LVKHGSNRLYGD 137

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (118), Expect = 2e-07
 Identities = 23/129 (17%), Positives = 39/129 (30%), Gaps = 39/129 (30%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGA------------- 110
            TP+  AA      +   ++E G  N + A      TA+H A A G              
Sbjct: 104 CTPLHYAASKNRHEIAVMLLEGG-ANPD-AKDHYEATAMHRAAAKGNLKMIHILLYYKAS 161

Query: 111 -----------------NSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRK 153
                                E  KLL+S  A +   +     P+ +   A         
Sbjct: 162 TNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQV---AKG----GLG 214

Query: 154 RAIELLLKG 162
             ++ +++G
Sbjct: 215 LILKRMVEG 223

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (103), Expect = 2e-05
 Identities = 26/139 (18%), Positives = 43/139 (30%), Gaps = 25/139 (17%)

Query: 19  ILLELSASDDISAFKREIEEKGFDVDE--------------------PSFWYGRRIGSKK 58
           ++  L+ S  +   K  I                               F     +    
Sbjct: 6   MVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 65

Query: 59  MGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVK 118
                 +P+ IAA  G   ++K ++  G   VN A   +G T LH A +       E+  
Sbjct: 66  KDDAGWSPLHIAASAGRDEIVKALLGKG-AQVN-AVNQNGCTPLHYAASKN---RHEIAV 120

Query: 119 LLLSASADVNCVDVYGNKP 137
           +LL   A+ +  D Y    
Sbjct: 121 MLLEGGANPDAKDHYEATA 139

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.8 bits (117), Expect = 2e-07
 Identities = 8/45 (17%), Positives = 17/45 (37%), Gaps = 1/45 (2%)

Query: 65  TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGG 109
            P+  A M      ++ ++ +    +      DG   LH +V+  
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLL-QKDQDGRIPLHWSVSFQ 45

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.4 bits (103), Expect = 1e-05
 Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 7/62 (11%)

Query: 65  TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSAS 124
           TP+  A   G       ++E      +    + G  A   A+      + +V K  L+  
Sbjct: 174 TPLFHALAEGHGDAAVLLVEKYGAEYD-LVDNKGAKAEDVAL------NEQVKKFFLNNV 226

Query: 125 AD 126
            D
Sbjct: 227 VD 228

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.2 bits (92), Expect = 3e-04
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 5/78 (6%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA 123
           + P+  AA  GS+ +++ +   GK  VN      G+T L  A+A       +   LL+  
Sbjct: 139 QIPLHRAASVGSLKLIELLCGLGKSAVNWQD-KQGWTPLFHALA---EGHGDAAVLLVEK 194

Query: 124 S-ADVNCVDVYGNKPVDL 140
             A+ + VD  G K  D+
Sbjct: 195 YGAEYDLVDNKGAKAEDV 212

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 11/39 (28%), Positives = 14/39 (35%), Gaps = 4/39 (10%)

Query: 100 TALHCAVAGGANSSFEVVKLLL-SASADVNCVDVYGNKP 137
             LH A        F  V+ LL S  + +   D  G  P
Sbjct: 2   YPLHQACMEN---EFFKVQELLHSKPSLLLQKDQDGRIP 37

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.9 bits (115), Expect = 6e-07
 Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 5/81 (6%)

Query: 48  FWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVA 107
                   +K      RTP+ +A    + +VL+ +++ G  +   A    G T L  A+ 
Sbjct: 177 LRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG-ADPT-ARMYGGRTPLGSALL 234

Query: 108 GGANSSFEVVKLLLSASADVN 128
                +  + +LL +  A   
Sbjct: 235 RP---NPILARLLRAHGAPEP 252

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.5 bits (114), Expect = 7e-07
 Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 1/47 (2%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETG-KVNVNRACGSDGFTALHCAVAGG 109
            T + +A +      L +++               G TALH A   G
Sbjct: 10  DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILG 56

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.2 bits (108), Expect = 5e-06
 Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 11/54 (20%)

Query: 97  DGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLH 150
           DG TALH AV          +  LL  SA    +D+  +          ++ LH
Sbjct: 8   DGDTALHLAVIHQ---HEPFLDFLLGFSAGHEYLDLQNDL--------GQTALH 50

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 12/49 (24%), Positives = 17/49 (34%), Gaps = 6/49 (12%)

Query: 113 SFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLK 161
           +  V++LLL A AD       G  P+     A+            LL  
Sbjct: 204 AASVLELLLKAGADPTARMYGGRTPLGS---ALL---RPNPILARLLRA 246

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (109), Expect = 2e-06
 Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 97  DGFTALHCAVAGG-ANSSFEVVKLLLSASADVNCVDVYGNKP 137
           DG + LH A+       + EV++ +    A +N  +     P
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTP 42

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (90), Expect = 7e-04
 Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 4/45 (8%)

Query: 64  RTPIMIAAMFGSVAVLKYVIETG---KVNVNRACGSDGFTALHCA 105
            + + +A +    A+   VI         +N    +   T LH A
Sbjct: 3   DSFLHLAIIHEEKALTMEVIRQVKGDLAFLN-FQNNLQQTPLHLA 46

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 8e-04
 Identities = 10/87 (11%), Positives = 28/87 (32%), Gaps = 5/87 (5%)

Query: 40  GFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGF 99
           G+              + +     RT + +A    +  ++  +++ G  +VN      G+
Sbjct: 122 GYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG-ADVN-RVTYQGY 179

Query: 100 TALHCAVAGGANSSFEVVKLLLSASAD 126
           +            S  + + L   + +
Sbjct: 180 SPYQLTWGRP---STRIQQQLGQLTLE 203

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (106), Expect = 7e-06
 Identities = 16/82 (19%), Positives = 39/82 (47%), Gaps = 5/82 (6%)

Query: 59  MGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVK 118
                R+P++ A    S+++++ +++ G     +     G +ALH A   G      +V+
Sbjct: 140 DIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMY--SGSSALHSASGRG---LLPLVR 194

Query: 119 LLLSASADVNCVDVYGNKPVDL 140
            L+ + AD +  + + + P+ +
Sbjct: 195 TLVRSGADSSLKNCHNDTPLMV 216

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (102), Expect = 2e-05
 Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 7/48 (14%)

Query: 97  DGFTALHCAVAGGANSSFEVVKLLLS----ASADVNCVDVYGNKPVDL 140
           DG T LH AV  G   +   V  L++       +++  +     P+ L
Sbjct: 2   DGDTPLHIAVVQG---NLPAVHRLVNLFQQGGRELDIYNNLRQTPLHL 46

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 7e-05
 Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 4/45 (8%)

Query: 64  RTPIMIAAMFGSVAVLKYVIET---GKVNVNRACGSDGFTALHCA 105
            TP+ IA + G++  +  ++     G   ++    +   T LH A
Sbjct: 4   DTPLHIAVVQGNLPAVHRLVNLFQQGGRELD-IYNNLRQTPLHLA 47

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 6/60 (10%), Positives = 24/60 (40%), Gaps = 5/60 (8%)

Query: 59  MGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVK 118
             +   + +  A+  G + +++ ++ +G  + +        T L  A +       ++++
Sbjct: 173 QMYSGSSALHSASGRGLLPLVRTLVRSG-ADSS-LKNCHNDTPLMVARSRR---VIDILR 227

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 2e-05
 Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 3/36 (8%)

Query: 100 TALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGN 135
             L  A A G     E +  LL  + +VN  + +G 
Sbjct: 3   NELASAAARG---DLEQLTSLLQNNVNVNAQNGFGR 35

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (87), Expect = 1e-04
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 4/33 (12%)

Query: 284 YRTRLCKD--EIG-CAR-KVCFFAHKPEELRPV 312
           Y+T LC+   E G C   + C FAH   ELR +
Sbjct: 4   YKTELCRPFEESGTCKYGEKCQFAHGFHELRSL 36

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (80), Expect = 0.001
 Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 1/25 (4%)

Query: 253 PCPEF-RKGACPKGDGCEYAHGVFE 276
            C  F   G C  G+ C++AHG  E
Sbjct: 8   LCRPFEESGTCKYGEKCQFAHGFHE 32

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 40.9 bits (94), Expect = 2e-04
 Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 4/46 (8%)

Query: 75  SVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLL 120
           +  V+  ++  G   +N      G T+LH A         +  K L
Sbjct: 1   TAQVISDLLAQG-AELNATMDKTGETSLHLAARFA---RADAAKRL 42

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 38.6 bits (88), Expect = 0.001
 Identities = 12/73 (16%), Positives = 22/73 (30%), Gaps = 5/73 (6%)

Query: 48  FWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVA 107
                         ++ TP+ +AA  GS    K +++    N               A  
Sbjct: 141 ILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNF-ANRE-ITDHMDRLPRDVASE 198

Query: 108 GGANSSFEVVKLL 120
                  ++V+LL
Sbjct: 199 RL---HHDIVRLL 208

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.4 bits (88), Expect = 7e-04
 Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 6/76 (7%)

Query: 65  TPIMIAAMFGSVAVLKYVIETGKVNVNRAC-----GSDGFTALHCAVAGGANSSFEVVKL 119
             +  A     +  L      G V++              TALH AV     +S  +V  
Sbjct: 8   HSLCEAVKTRDIFGLLQAYADG-VDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDF 66

Query: 120 LLSASADVNCVDVYGN 135
           L+  S +++     G+
Sbjct: 67  LVQNSGNLDKQTGKGS 82

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Length = 40

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.7 bits (80), Expect = 0.001
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 4/36 (11%)

Query: 281 PAQYRTRLCKD--EIG-CARKV-CFFAHKPEELRPV 312
            ++Y+T LC+   E G C     C FAH   ELR  
Sbjct: 4   SSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQA 39

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Length = 40

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.3 bits (79), Expect = 0.002
 Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 1/25 (4%)

Query: 253 PCPEFRK-GACPKGDGCEYAHGVFE 276
            C  + + G C  G  C++AHG+ E
Sbjct: 11  LCRTYSESGRCRYGAKCQFAHGLGE 35

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 0.002
 Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 2/50 (4%)

Query: 78  VLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADV 127
           V K+++E+G   V     SD  TA             +  + L      +
Sbjct: 82  VCKFLVESG-AAVFAMTYSDMQTAADKCEE-MEEGYTQCSQFLYGVQEKM 129

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 34

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.1 bits (76), Expect = 0.004
 Identities = 12/36 (33%), Positives = 14/36 (38%), Gaps = 4/36 (11%)

Query: 242 RDPRKYPYTCVPCPEFRK-GACPKGDGCEYAHGVFE 276
           R P+   Y    C  F   G CP G  C + H   E
Sbjct: 2   RHPK---YKTELCRTFHTIGFCPYGPRCHFIHNADE 34

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	655
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.87
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.84
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.83
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.83
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.83
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.82
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.82
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.82
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.82
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.81
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.79
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.78
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.78
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.78
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.77
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.77
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.77
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.75
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.74
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.73
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.72
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.72
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.72
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.71
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.71
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.7
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.69
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.68
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.67
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.67
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.67
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.66
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.65
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.56
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.49
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.35
d1m9oa_	40	Tristetraproline (ttp, tis11, nup475) {Mouse (Mus	98.76
d1rgoa1	36	Butyrate response factor 2 (Tis11D) {Human (Homo s	98.72
d1rgoa2	34	Butyrate response factor 2 (Tis11D) {Human (Homo s	98.52
d1m9oa_	40	Tristetraproline (ttp, tis11, nup475) {Mouse (Mus	97.36
d1rgoa1	36	Butyrate response factor 2 (Tis11D) {Human (Homo s	97.34
d1rgoa2	34	Butyrate response factor 2 (Tis11D) {Human (Homo s	96.97
d2cqea2	29	Zinc finger CCCH domain-containing protein C19orf7	93.11

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.8e-22  Score=196.46  Aligned_cols=157  Identities=20%  Similarity=0.249  Sum_probs=137.7

Q ss_pred             ccCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCC--------------------cccccccCCccCCCCCChHHHHHHH
Q 006236           13 LYNKSSILLELSASDDISAFKREIEEKGFDVDEPS--------------------FWYGRRIGSKKMGFEERTPIMIAAM   72 (655)
Q Consensus        13 ~~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~d--------------------lw~g~~~~~~~~d~~G~TPLh~AA~   72 (655)
                      +.+|.|+||+||..|+.+.++.++. .+.+.....                    +++....+.+..|.+|.||||+|+.
T Consensus        34 D~~G~TpLh~Aa~~g~~e~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~  112 (223)
T d1uoha_          34 DQDSRTALHWACSAGHTEIVEFLLQ-LGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAAS  112 (223)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHH-HTCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHhhhhcccccccc-cccccccccccccccccccccccccchhHHHhccCceeEeeCCCCCchhhHHHH
Confidence            3568999999999999998887765 555544332                    2233445566778999999999999


Q ss_pred             cCCHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcCh
Q 006236           73 FGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSR  152 (655)
Q Consensus        73 ~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~  152 (655)
                      +|+.+++++|+++| +|++.. +..|.||||+|+..++   .+++++|+..+++++.+|.+|+||||+|+.      .++
T Consensus       113 ~~~~e~~~~Ll~~g-~d~~~~-~~~~~t~L~~a~~~~~---~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~------~g~  181 (223)
T d1uoha_         113 KNRHEIAVMLLEGG-ANPDAK-DHYEATAMHRAAAKGN---LKMIHILLYYKASTNIQDTEGNTPLHLACD------EER  181 (223)
T ss_dssp             HTCHHHHHHHHHTT-CCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCSCCCCTTCCCHHHHHHH------TTC
T ss_pred             cCCHHHHHHHHHCC-CCCCCc-CCCCCccchhhhhcCC---cchhhhhccccceeeeccCCCCceeccccc------cCc
Confidence            99999999999999 999998 9999999999999999   999999999999999999999999999997      899


Q ss_pred             HHHHHHHHhCCCCCCcccccCCCCccccc
Q 006236          153 KRAIELLLKGDHTIFEEEELVNIPVPQLS  181 (655)
Q Consensus       153 ~eivelLL~~GAdin~~d~~g~tpl~~l~  181 (655)
                      .+++++||++|++++.+|.+|.+|+..+.
T Consensus       182 ~~~v~~LL~~Gad~~~~d~~g~tpl~~A~  210 (223)
T d1uoha_         182 VEEAKLLVSQGASIYIENKEEKTPLQVAK  210 (223)
T ss_dssp             HHHHHHHHHTTCCSCCCCTTSCCHHHHCC
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence            99999999999999999999999987653

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=8.2e-21  Score=187.16  Aligned_cols=141  Identities=20%  Similarity=0.215  Sum_probs=118.8

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcc------ccc-----------------------------------
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFW------YGR-----------------------------------   52 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw------~g~-----------------------------------   52 (655)
                      ..|.|+||+|+..|+.+.++.||. .|+++|..+..      +..                                   
T Consensus        43 ~~g~TpL~~A~~~g~~~iv~~Ll~-~ga~i~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~  121 (255)
T d1oy3d_          43 DLGQTALHLAAILGEASTVEKLYA-AGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP  121 (255)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHH-TTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-------------
T ss_pred             CCCCCccchHHhhccccccccccc-ccccccccccccchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcc
Confidence            567899999999999887776665 89998887500      000                                   


Q ss_pred             --------------------------ccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCChHHHHHH
Q 006236           53 --------------------------RIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAV  106 (655)
Q Consensus        53 --------------------------~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa  106 (655)
                                                ....+..|.+|+||||+||..++.+++++|++.+ ++++...+..|.||||+|+
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~-~~~~~~~~~~g~TpL~~A~  200 (255)
T d1oy3d_         122 DTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAG-ADLNKPEPTCGRTPLHLAV  200 (255)
T ss_dssp             ----------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHT-CCTTCCCTTTCCCHHHHHH
T ss_pred             cchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccchhccc-ccccccccccccccccccc
Confidence                                      0111234788999999999999999999999999 8888665788999999999


Q ss_pred             HcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCC
Q 006236          107 AGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHT  165 (655)
Q Consensus       107 ~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAd  165 (655)
                      ..|+   .+++++|+++|+|++.+|.+|.||||+|+.      .++.+++++|+++||+
T Consensus       201 ~~~~---~~~v~~Ll~~gadin~~d~~g~t~L~~A~~------~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         201 EAQA---ASVLELLLKAGADPTARMYGGRTPLGSALL------RPNPILARLLRAHGAP  250 (255)
T ss_dssp             HTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHT------SSCHHHHHHHHHTTCC
T ss_pred             cccH---HHHHHHHHHCCCCCCCCCCCCCCHHHHHHH------CCCHHHHHHHHHcCCC
Confidence            9999   999999999999999999999999999987      8999999999999997

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=9.5e-21  Score=183.70  Aligned_cols=142  Identities=15%  Similarity=0.108  Sum_probs=124.0

Q ss_pred             chHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc---
Q 006236           17 SSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA---   93 (655)
Q Consensus        17 ~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~---   93 (655)
                      ++|||+||..|+.+.|+.+|+..+.+++.++             .+|+||||+|+..|+.+++++||++| ++++..   
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d-------------~~G~TpL~~A~~~g~~~iv~~Ll~~g-a~~~~~~~~   66 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKD-------------QDGRIPLHWSVSFQAHEITSFLLSKM-ENVNLDDYP   66 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCC-------------TTSCCHHHHHHHTTCHHHHHHHHTTC-TTCCGGGCC
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccC-------------CCCCCHHHHHHHcCCccccchhhhhh-ccccccccc
Confidence            4799999999999999999998888888874             89999999999999999999999998 776522   


Q ss_pred             -------------------------------------------------------------------cCCCCChHHHHHH
Q 006236           94 -------------------------------------------------------------------CGSDGFTALHCAV  106 (655)
Q Consensus        94 -------------------------------------------------------------------~d~~G~TpLH~Aa  106 (655)
                                                                                         .+..|+||||+|+
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~  146 (229)
T d1ixva_          67 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAA  146 (229)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhh
Confidence                                                                               1467888999999


Q ss_pred             HcCCCChHHHHHHHHhCC-CCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHh-CCCCCCcccccCCCCccccc
Q 006236          107 AGGANSSFEVVKLLLSAS-ADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLK-GDHTIFEEEELVNIPVPQLS  181 (655)
Q Consensus       107 ~~G~~~~~eiVklLL~~G-ADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~-~GAdin~~d~~g~tpl~~l~  181 (655)
                      ..|+   .+++++|++.+ .++|.+|.+|+||||+|+.      .++.+++++||+ .|++++.+|.+|.+++..+.
T Consensus       147 ~~~~---~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~------~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~  214 (229)
T d1ixva_         147 SVGS---LKLIELLCGLGKSAVNWQDKQGWTPLFHALA------EGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL  214 (229)
T ss_dssp             HHTC---HHHHHHHHTTTCCCSCCCCTTSCCHHHHHHH------TTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCS
T ss_pred             hccc---ccccccccccccccccccccccCCchhhhcc------cccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHh
Confidence            9888   99999999987 7889999999999999987      889999999996 69999999999999986543

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.83  E-value=1.3e-21  Score=174.50  Aligned_cols=107  Identities=26%  Similarity=0.345  Sum_probs=89.8

Q ss_pred             chHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccCC
Q 006236           17 SSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGS   96 (655)
Q Consensus        17 ~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~   96 (655)
                      .|+|++|+..|+.+.++.+|. .|+++|..+             .+|+||||+|+..|+.+++++|++.| +|+|.+ |.
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~-~g~d~n~~~-------------~~g~t~lh~A~~~~~~~~~~~ll~~g-~din~~-d~   66 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVA-KGEDVNRTL-------------EGGRKPLHYAADCGQLEILEFLLLKG-ADINAP-DK   66 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHT-TTCCCCCCS-------------SSSCCTTHHHHHHSTTTHHHHHHHSS-CTTTCC-SS
T ss_pred             ChHHHHHHHCCCHHHHHHHHH-hhhcccccc-------------cccccccccccccccccccccccccc-ceeeec-cc
Confidence            367888888888888877775 788888874             77888888888888888888888888 888887 88


Q ss_pred             CCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhh
Q 006236           97 DGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIP  142 (655)
Q Consensus        97 ~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa  142 (655)
                      .|+||||+|+..|+   .++|++|+++|+|++.+|.+|.||||+|.
T Consensus        67 ~g~tpLh~A~~~~~---~~~v~~Ll~~Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          67 HHITPLLSAVYEGH---VSCVKLLLSKGADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             SCSCHHHHHHTTTC---CHHHHHHHTTCCCSSSSSSSTCCCCCTCS
T ss_pred             ccccchhhhhhcCc---hhhhhhhhcccccceeeCCCCCCHHHHHh
Confidence            88888888888888   88888888888888888888888888874

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.83  E-value=1.4e-20  Score=189.19  Aligned_cols=143  Identities=26%  Similarity=0.371  Sum_probs=125.9

Q ss_pred             CCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc-
Q 006236           15 NKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA-   93 (655)
Q Consensus        15 ~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~-   93 (655)
                      .+.|+|++||..|+++.|+.||+ .|+|||..+             .+|.||||+|+..|+.++|++|++++ ++.+.. 
T Consensus        39 ~~~t~l~~A~~~G~~~~v~~Ll~-~Gadvn~~d-------------~~G~T~L~~A~~~g~~eiv~~Ll~~~-~~~~~~~  103 (291)
T d1s70b_          39 DDGAVFLAACSSGDTEEVLRLLE-RGADINYAN-------------VDGLTALHQACIDDNVDMVKFLVENG-ANINQPD  103 (291)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHH-HCCCTTCBC-------------TTCCBHHHHHHHTTCHHHHHHHHHTT-CCTTCCC
T ss_pred             CCchHHHHHHHcCCHHHHHHHHH-CCCCCCccC-------------CCCCcHHHHHHhcCCceeeeeecccc-ccccccc
Confidence            45688999999999999988886 899999884             88999999999999999999999887 553321 


Q ss_pred             --------------------------------------------------------------------------------
Q 006236           94 --------------------------------------------------------------------------------   93 (655)
Q Consensus        94 --------------------------------------------------------------------------------   93 (655)
                                                                                                      
T Consensus       104 ~~~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~  183 (291)
T d1s70b_         104 NEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQ  183 (291)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchh
Confidence                                                                                            


Q ss_pred             -----------cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhC
Q 006236           94 -----------CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKG  162 (655)
Q Consensus        94 -----------~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~  162 (655)
                                 .+..|.||||+|+..|+   .+++++|++.|+|+|.+|.+|+||||+|+.      .|+.+||++||++
T Consensus       184 ~~~~~~~~~~~~~~~g~t~L~~a~~~~~---~~~~~~Ll~~g~din~~~~~g~TpL~~A~~------~g~~~iv~lLl~~  254 (291)
T d1s70b_         184 WLNSGHINDVRHAKSGGTALHVAAAKGY---TEVLKLLIQARYDVNIKDYDGWTPLHAAAH------WGKEEACRILVEN  254 (291)
T ss_dssp             HHHHTCCCCCCCTTTCCCHHHHHHHHTC---HHHHHHHHTTTCCTTCCCTTCCCHHHHHHH------TTCHHHHHHHHHT
T ss_pred             hhcccccccccccCCCCChhhHHHHcCC---hhhhcccccceecccccccCCCCHHHHHHH------cCCHHHHHHHHHC
Confidence                       13567788888888888   999999999999999999999999999997      8999999999999


Q ss_pred             CCCCCcccccCCCCccccc
Q 006236          163 DHTIFEEEELVNIPVPQLS  181 (655)
Q Consensus       163 GAdin~~d~~g~tpl~~l~  181 (655)
                      |+|++.+|.+|.||+..+.
T Consensus       255 Gadv~~~d~~G~TaL~~A~  273 (291)
T d1s70b_         255 LCDMEAVNKVGQTAFDVAD  273 (291)
T ss_dssp             TCCTTCCCTTSCCTTTSCC
T ss_pred             CCCCCCcCCCCCCHHHHHH
Confidence            9999999999999997764

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.1e-20  Score=171.42  Aligned_cols=123  Identities=27%  Similarity=0.339  Sum_probs=110.6

Q ss_pred             hHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccCCC
Q 006236           18 SILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSD   97 (655)
Q Consensus        18 s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~~   97 (655)
                      +.|+.||..|+.+.++.+|+ +|+|+|.++             .+|+||||+|+..|+.+++++|++.| +|+|.. |.+
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~-~g~d~n~~d-------------~~g~t~Lh~A~~~~~~~~~~~ll~~g-~~~~~~-d~~   66 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIY-EVDDPSLPN-------------DEGITALHNAVCAGHTEIVKFLVQFG-VNVNAA-DSD   66 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTS-TTSSCCCCC-------------TTSCCHHHHHHHHTCHHHHHHHHHHT-CCTTCC-CTT
T ss_pred             HHHHHHHHcCCHHHHHHHHH-cCCCccccc-------------cccccccccccccccccccccccccc-cccccc-ccc
Confidence            67889999999999887775 899999985             89999999999999999999999999 999998 999


Q ss_pred             CChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCC-CCCCccchhhhccCCCCcChHHHHHHHHhCC
Q 006236           98 GFTALHCAVAGGANSSFEVVKLLLSASADVNCVDV-YGNKPVDLIPVAMKSPLHSRKRAIELLLKGD  163 (655)
Q Consensus        98 G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~-~G~TPLhlAa~~~~~~~~g~~eivelLL~~G  163 (655)
                      |+||||+|+..|+   .++|++|+++|++++..+. .|.||++++..    ...|+.+|+++|+..+
T Consensus        67 g~tpLh~A~~~g~---~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a----~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          67 GWTPLHCAASCNN---VQVCKFLVESGAAVFAMTYSDMQTAADKCEE----MEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             CCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCSSSCCCHHHHCCS----SSTTCCCHHHHHHHHH
T ss_pred             CcccccccchhhH---HHHHHHHHHcCCCcccccCCCCCCHHHHHHH----HHcChHHHHHHHHhHH
Confidence            9999999999999   9999999999999998875 58899877642    4578899999998643

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=1.3e-20  Score=185.70  Aligned_cols=147  Identities=21%  Similarity=0.178  Sum_probs=110.2

Q ss_pred             cccCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccc
Q 006236           12 ALYNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVN   91 (655)
Q Consensus        12 l~~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN   91 (655)
                      ++.+|.|+||+||..|+.+.++.||. .|++++..+          ..|..|+||||+||..|+.+++++|++.| +|++
T Consensus         5 i~~~G~t~Lh~A~~~~~~~~v~~Ll~-~~a~~~~i~----------~~~~~g~TpL~~A~~~g~~~iv~~Ll~~g-a~i~   72 (255)
T d1oy3d_           5 VTEDGDTALHLAVIHQHEPFLDFLLG-FSAGHEYLD----------LQNDLGQTALHLAAILGEASTVEKLYAAG-AGVL   72 (255)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHH-HHTTSGGGG----------CCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCSS
T ss_pred             CCcCCCCHHHHHHHcCCHHHHHHHHH-cCCCccccc----------CcCCCCCCccchHHhhccccccccccccc-cccc
Confidence            45678999999999999988877765 787743321          12588999999999999999999999998 8877


Q ss_pred             cccCCC--------------------------------------------------------------------------
Q 006236           92 RACGSD--------------------------------------------------------------------------   97 (655)
Q Consensus        92 ~~~d~~--------------------------------------------------------------------------   97 (655)
                      .. |.+                                                                          
T Consensus        73 ~~-d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  151 (255)
T d1oy3d_          73 VA-ERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQL  151 (255)
T ss_dssp             CC-CTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGT
T ss_pred             cc-ccccchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCccc
Confidence            55 444                                                                          


Q ss_pred             ------CChHHHHHHHcCCCChHHHHHHHHhCCCCCccc-CCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCccc
Q 006236           98 ------GFTALHCAVAGGANSSFEVVKLLLSASADVNCV-DVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEE  170 (655)
Q Consensus        98 ------G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~-D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d  170 (655)
                            |.||||+|+..++   .+++++|++.+++++.. +..|.||||+|+.      .++.+++++|+++|++++.+|
T Consensus       152 n~~d~~g~TpLh~A~~~~~---~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~------~~~~~~v~~Ll~~gadin~~d  222 (255)
T d1oy3d_         152 EAENYDGHTPLHVAVIHKD---AEMVRLLRDAGADLNKPEPTCGRTPLHLAVE------AQAASVLELLLKAGADPTARM  222 (255)
T ss_dssp             TCCCTTSCCHHHHHHHTTC---HHHHHHHHHHTCCTTCCCTTTCCCHHHHHHH------TTCHHHHHHHHHTTCCTTCCC
T ss_pred             ccccccCcccccccccccc---cccccchhccccccccccccccccccccccc------ccHHHHHHHHHHCCCCCCCCC
Confidence                  4555555555555   77777777777776643 4567777777776      677888888888888888888


Q ss_pred             ccCCCCcccc
Q 006236          171 ELVNIPVPQL  180 (655)
Q Consensus       171 ~~g~tpl~~l  180 (655)
                      .+|.+|+..+
T Consensus       223 ~~g~t~L~~A  232 (255)
T d1oy3d_         223 YGGRTPLGSA  232 (255)
T ss_dssp             TTSCCHHHHH
T ss_pred             CCCCCHHHHH
Confidence            8888777543

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=5.8e-20  Score=172.97  Aligned_cols=144  Identities=17%  Similarity=0.186  Sum_probs=128.3

Q ss_pred             CCchHHHHHHHhCCHHHHHHHHH---hcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccc
Q 006236           15 NKSSILLELSASDDISAFKREIE---EKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVN   91 (655)
Q Consensus        15 ~g~s~LL~AAa~gd~~~vk~LL~---~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN   91 (655)
                      +|.|+||+||..|+.+.++.+|.   +.|+++|.++             .+|+||||+|+..|+.+++++|+++| ++++
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d-------------~~g~TpL~~A~~~~~~~iv~~Ll~~g-a~~~   67 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYN-------------NLRQTPLHLAVITTLPSVVRLLVTAG-ASPM   67 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCC-------------TTSCCHHHHHHHTTCHHHHHHHHHTT-CCTT
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccC-------------CCCCccceehhccccccccccccccc-cccc
Confidence            58999999999999998877764   6899999885             89999999999999999999999998 7766


Q ss_pred             cc----------------------------------------------------------------------cCCCCChH
Q 006236           92 RA----------------------------------------------------------------------CGSDGFTA  101 (655)
Q Consensus        92 ~~----------------------------------------------------------------------~d~~G~Tp  101 (655)
                      ..                                                                      ....+.++
T Consensus        68 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  147 (228)
T d1k1aa_          68 ALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSP  147 (228)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCH
T ss_pred             ccccccccccccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhH
Confidence            43                                                                      12456788


Q ss_pred             HHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccCCCCccccc
Q 006236          102 LHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLS  181 (655)
Q Consensus       102 LH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~tpl~~l~  181 (655)
                      ||.|+..+.   ..+++.+++.|.+++.+|.+|.||||+|+.      .++.+++++|+++|+|++.+|.+|.||+..+.
T Consensus       148 l~~a~~~~~---~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~------~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~  218 (228)
T d1k1aa_         148 LIHAVENNS---LSMVQLLLQHGANVNAQMYSGSSALHSASG------RGLLPLVRTLVRSGADSSLKNCHNDTPLMVAR  218 (228)
T ss_dssp             HHHHHHTTC---HHHHHHHHHTTCCTTCBCTTSCBHHHHHHH------HTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCS
T ss_pred             HHHHHHhhh---hhhhhhhhhhccccccccccCcchHHHHHH------cCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence            888888887   899999999999999999999999999997      89999999999999999999999999987654

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=4.6e-21  Score=172.49  Aligned_cols=121  Identities=22%  Similarity=0.330  Sum_probs=110.0

Q ss_pred             CchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccC
Q 006236           16 KSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACG   95 (655)
Q Consensus        16 g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d   95 (655)
                      +.+.||.||..|+++.++.+|+ +|+++|.++             .+|.||||+|+ .|+.+++++|+++| +++|.. +
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~-~gad~n~~~-------------~~g~t~l~~a~-~g~~~~v~~Ll~~g-a~~~~~-~   65 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLE-AGANPNAPN-------------SYGRRPIQVMM-MGSARVAELLLLHG-AEPNCA-D   65 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHT-TTCCTTCCC-------------SSSCCTTTSSC-TTCHHHHHHHHTTT-CCCCCC-C
T ss_pred             ChhHHHHHHHCCCHHHHHHHHH-cCCcccccc-------------ccccccccccc-cccccccccccccc-cccccc-c
Confidence            4578999999999998888875 899999885             88999999775 79999999999999 999998 6


Q ss_pred             CCC-ChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhC
Q 006236           96 SDG-FTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKG  162 (655)
Q Consensus        96 ~~G-~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~  162 (655)
                      ..+ .||||+|+..|+   .+++++|+++|+|++.+|.+|+||||+|+.      .++.+++++|++.
T Consensus        66 ~~~~~~~L~~A~~~g~---~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~------~g~~~~v~~Llsa  124 (125)
T d1bi7b_          66 PATLTRPVHDAAREGF---LDTLVVLHRAGARLDVRDAWGRLPVDLAEE------LGHRDVARYLRAA  124 (125)
T ss_dssp             TTTCCCHHHHHHHHTC---HHHHHHHHHHTCCSSCCCTTCCCHHHHHHH------HTCHHHHHHHSSC
T ss_pred             cccccccccccccccc---ccccccccccccccccccCCCCCHHHHHHH------cCCHHHHHHHHhc
Confidence            655 479999999999   999999999999999999999999999997      8999999999853

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.82  E-value=1e-20  Score=168.76  Aligned_cols=106  Identities=23%  Similarity=0.228  Sum_probs=101.8

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhh
Q 006236           64 RTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPV  143 (655)
Q Consensus        64 ~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~  143 (655)
                      .|||++|+..|+.++|++|++.| +|+|.. +..|+||||+|+..|+   .+++++|+++|+|+|.+|.+|+||||+|+.
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g-~d~n~~-~~~g~t~lh~A~~~~~---~~~~~~ll~~g~din~~d~~g~tpLh~A~~   77 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKG-EDVNRT-LEGGRKPLHYAADCGQ---LEILEFLLLKGADINAPDKHHITPLLSAVY   77 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTT-CCCCCC-SSSSCCTTHHHHHHST---TTHHHHHHHSSCTTTCCSSSCSCHHHHHHT
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhh-hccccc-cccccccccccccccc---cccccccccccceeeecccccccchhhhhh
Confidence            48999999999999999999999 999998 9999999999999999   999999999999999999999999999987


Q ss_pred             ccCCCCcChHHHHHHHHhCCCCCCcccccCCCCcccc
Q 006236          144 AMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQL  180 (655)
Q Consensus       144 ~~~~~~~g~~eivelLL~~GAdin~~d~~g~tpl~~l  180 (655)
                            .++.+++++|+++|+|++.+|.+|.+|+...
T Consensus        78 ------~~~~~~v~~Ll~~Gad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          78 ------EGHVSCVKLLLSKGADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             ------TTCCHHHHHHHTTCCCSSSSSSSTCCCCCTC
T ss_pred             ------cCchhhhhhhhcccccceeeCCCCCCHHHHH
Confidence                  8999999999999999999999999998655

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=2.3e-20  Score=172.58  Aligned_cols=141  Identities=20%  Similarity=0.293  Sum_probs=130.2

Q ss_pred             chHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccCC
Q 006236           17 SSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGS   96 (655)
Q Consensus        17 ~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~   96 (655)
                      .++|+.||..|+.+.|+.+|.+.++++|..+             .+|+||||+|+ +|+.+++++||+.+ ++++.. +.
T Consensus         3 g~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d-------------~~g~t~L~~A~-~~~~~~v~~Ll~~~-~~~~~~-~~   66 (156)
T d1bd8a_           3 GDRLSGAAARGDVQEVRRLLHRELVHPDALN-------------RFGKTALQVMM-FGSTAIALELLKQG-ASPNVQ-DT   66 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCCTTCCC-------------TTSCCHHHHSC-TTCHHHHHHHHHTT-CCTTCC-CT
T ss_pred             cHHHHHHHHcCCHHHHHHHHHhCCCCCCccC-------------CCCCccccccc-cccccccccccccc-cccccc-cc
Confidence            3679999999999999999998899999884             89999999986 58999999999999 999998 88


Q ss_pred             CCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccCCCC
Q 006236           97 DGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIP  176 (655)
Q Consensus        97 ~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~tp  176 (655)
                      .|.+||++++..++   .+++++++++|+++|.+|.+|.||||+|+.      .++.+++++|+ .|++++.+|.+|.||
T Consensus        67 ~~~~~l~~~~~~~~---~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~------~~~~~i~~~L~-~~~~~~~~d~~G~Tp  136 (156)
T d1bd8a_          67 SGTSPVHDAARTGF---LDTLKVLVEHGADVNVPDGTGALPIHLAVQ------EGHTAVVSFLA-AESDLHRRDARGLTP  136 (156)
T ss_dssp             TSCCHHHHHHHTTC---HHHHHHHHHTTCCSCCCCTTSCCHHHHHHH------HTCHHHHHHHH-TTSCTTCCCTTSCCH
T ss_pred             cccccccccccccc---ccccccccccccccccccCCCCeeeccccc------ccccccccccc-ccccccccCCCCCCH
Confidence            99999999999999   999999999999999999999999999997      89999999887 789999999999999


Q ss_pred             ccccccc
Q 006236          177 VPQLSKD  183 (655)
Q Consensus       177 l~~l~~~  183 (655)
                      +..+...
T Consensus       137 L~~A~~~  143 (156)
T d1bd8a_         137 LELALQR  143 (156)
T ss_dssp             HHHHHHS
T ss_pred             HHHHHHc
Confidence            8765544

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=7e-20  Score=171.69  Aligned_cols=130  Identities=22%  Similarity=0.285  Sum_probs=114.7

Q ss_pred             hHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHc---CCHHHHHHHHHcCCCcccccc
Q 006236           18 SILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMF---GSVAVLKYVIETGKVNVNRAC   94 (655)
Q Consensus        18 s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~---G~~evvk~LL~~G~aDvN~~~   94 (655)
                      ..|++|+..+|+..+++++. .|.|++...       .....+..|+||||+|+..   |+.++|++||++| +|+|.+ 
T Consensus         8 ~~L~~Av~~~dl~~l~~~~~-~g~d~~~~~-------~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~g-adin~~-   77 (154)
T d1dcqa1           8 HSLCEAVKTRDIFGLLQAYA-DGVDLTEKI-------PLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNS-GNLDKQ-   77 (154)
T ss_dssp             HHHHHHHHTTCHHHHHHHHH-TTCCTTSBC-------CCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHC-SCTTCC-
T ss_pred             HHHHHHHHhCCHHHHHHHHH-cCCCcCCCC-------CcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcC-CChhhh-
Confidence            46788999999999999886 788887652       1222357799999999985   6789999999999 999998 


Q ss_pred             CCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCC
Q 006236           95 GSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTI  166 (655)
Q Consensus        95 d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdi  166 (655)
                      |.+|+||||+|+..|+   .+++++|+++|+|++.+|.+|.||||+|+.      .++.+|+++|++.++..
T Consensus        78 d~~g~TpLh~A~~~~~---~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~------~~~~~i~~~L~~~~~~~  140 (154)
T d1dcqa1          78 TGKGSTALHYCCLTDN---AECLKLLLRGKASIEIANESGETPLDIAKR------LKHEHCEELLTQALSGR  140 (154)
T ss_dssp             CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHH------TTCHHHHHHHHHHHTTC
T ss_pred             hhhhcccccccccccc---ccccccccccCccccccCCCCCCHHHHHHH------cCCHHHHHHHHHhCCCC
Confidence            9999999999999999   999999999999999999999999999997      89999999999876543

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2.5e-19  Score=175.21  Aligned_cols=143  Identities=22%  Similarity=0.350  Sum_probs=121.8

Q ss_pred             CchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccC
Q 006236           16 KSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACG   95 (655)
Q Consensus        16 g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d   95 (655)
                      +.+.|+.+|..|+++.++++|+..+.+++.+|             .+|+||||+||..|+.+++++|+..+ .+.... .
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D-------------~~G~TpLh~Aa~~g~~e~~~~l~~~~-~~~~~~-~   67 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKSLATRTD-------------QDSRTALHWACSAGHTEIVEFLLQLG-VPVNDK-D   67 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGGGGGCCC-------------TTSCCHHHHHHHHTCHHHHHHHHHHT-CCSCCC-C
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCCcCcCcC-------------CCCCCHHHHHHHhhhhcccccccccc-cccccc-c
Confidence            35678889999999999999999999999884             89999999999999999999999988 777666 6


Q ss_pred             CCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccCCC
Q 006236           96 SDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNI  175 (655)
Q Consensus        96 ~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~t  175 (655)
                      ..+.+++++++..++   .+++++|+++|++++.+|.+|.||||+|+.      .++.+++++|+++|++++..+..+.+
T Consensus        68 ~~~~~~~~~~~~~~~---~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~------~~~~e~~~~Ll~~g~d~~~~~~~~~t  138 (223)
T d1uoha_          68 DAGWSPLHIAASAGR---DEIVKALLGKGAQVNAVNQNGCTPLHYAAS------KNRHEIAVMLLEGGANPDAKDHYEAT  138 (223)
T ss_dssp             TTCCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTCCCHHHHHHH------HTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             ccccccccccccccc---cchhHHHhccCceeEeeCCCCCchhhHHHH------cCCHHHHHHHHHCCCCCCCcCCCCCc
Confidence            778888888888888   888888888888888888888888888876      78888888888888888888888888


Q ss_pred             Ccccccc
Q 006236          176 PVPQLSK  182 (655)
Q Consensus       176 pl~~l~~  182 (655)
                      ++..+..
T Consensus       139 ~L~~a~~  145 (223)
T d1uoha_         139 AMHRAAA  145 (223)
T ss_dssp             HHHHHHH
T ss_pred             cchhhhh
Confidence            7754443

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.78  E-value=9.3e-20  Score=180.75  Aligned_cols=150  Identities=17%  Similarity=0.240  Sum_probs=127.4

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHH-------HhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcC
Q 006236           14 YNKSSILLELSASDDISAFKREI-------EEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETG   86 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL-------~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G   86 (655)
                      .+|.|+||.||..|+.+.++.||       .+.|+|||.++             .+|+||||+|+..|+.++|++||++|
T Consensus        31 ~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d-------------~~G~TpLh~A~~~g~~~iv~~Ll~~G   97 (277)
T d2fo1e1          31 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMD-------------CDENTPLMLAVLARRRRLVAYLMKAG   97 (277)
T ss_dssp             SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCC-------------TTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccC-------------CCCCeeeccccccccccccccccccc
Confidence            35899999999999888776553       45899999985             89999999999999999999999999


Q ss_pred             CCccccccCCCCChHHHHHHHcCCC-------------------------------------------------------
Q 006236           87 KVNVNRACGSDGFTALHCAVAGGAN-------------------------------------------------------  111 (655)
Q Consensus        87 ~aDvN~~~d~~G~TpLH~Aa~~G~~-------------------------------------------------------  111 (655)
                       +|+|.. +.+|.||||+|+..++.                                                       
T Consensus        98 -ad~n~~-~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (277)
T d2fo1e1          98 -ADPTIY-NKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYD  175 (277)
T ss_dssp             -CCSCCC-CTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCC
T ss_pred             -cccccc-cccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhccccccccccccccccccccccc
Confidence             999988 88888888888877651                                                       


Q ss_pred             ----------------------ChHHHHHH-HHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCc
Q 006236          112 ----------------------SSFEVVKL-LLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFE  168 (655)
Q Consensus       112 ----------------------~~~eiVkl-LL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~  168 (655)
                                            ...+++++ +...+.+++.+|..|.||||+|+.      .++.+++++|+++|++++.
T Consensus       176 ~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~------~g~~~iv~~Ll~~gadin~  249 (277)
T d2fo1e1         176 GAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQ------EGRIEVVMYLIQQGASVEA  249 (277)
T ss_dssp             SGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHH------HTCHHHHHHHHHTTCCSSC
T ss_pred             ccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHH------cCCHHHHHHHHHCcCCCCC
Confidence                                  02456665 446788999999999999999997      8999999999999999999


Q ss_pred             ccccCCCCcccccccC
Q 006236          169 EEELVNIPVPQLSKDG  184 (655)
Q Consensus       169 ~d~~g~tpl~~l~~~~  184 (655)
                      +|.+|.+|+..+...+
T Consensus       250 ~d~~G~T~L~~A~~~~  265 (277)
T d2fo1e1         250 VDATDHTARQLAQANN  265 (277)
T ss_dssp             CCSSSCCHHHHHHHTT
T ss_pred             cCCCCCCHHHHHHHcC
Confidence            9999999986665443

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=3.8e-19  Score=162.28  Aligned_cols=142  Identities=20%  Similarity=0.326  Sum_probs=128.8

Q ss_pred             chHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccCC
Q 006236           17 SSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGS   96 (655)
Q Consensus        17 ~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~   96 (655)
                      .|+|++||..|+.+.|+.||. +|++++.              |..|+||||+|+..++.++++.++... ...+.. +.
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~-~ga~~~~--------------~~~g~t~L~~a~~~~~~~~~~~~~~~~-~~~~~~-~~   65 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMA-NGAPFTT--------------DWLGTSPLHLAAQYGHFSTTEVLLRAG-VSRDAR-TK   65 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHH-HTCCCCC--------------CTTCCCHHHHHHHHTCHHHHHHHHTTT-CCTTCC-CT
T ss_pred             CHHHHHHHHCCCHHHHHHHHH-cCCCccc--------------ccCCCcccccccccccccccccccccc-cccccc-cc
Confidence            489999999999999998887 7888773              488999999999999999999999988 666665 78


Q ss_pred             CCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccCCCC
Q 006236           97 DGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIP  176 (655)
Q Consensus        97 ~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~tp  176 (655)
                      .+.++++.++...+   .+++++|+..|++++.+|.+|+||||+|+.      .++.+++++|+++|++++.+|.+|.||
T Consensus        66 ~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~------~g~~~iv~~ll~~gad~~~~d~~g~Tp  136 (153)
T d1awcb_          66 VDRTPLHMAASEGH---ANIVEVLLKHGADVNAKDMLKMTALHWATE------HNHQEVVELLIKYGADVHTQSKFCKTA  136 (153)
T ss_dssp             TCCCHHHHHHHHTC---HHHHHHHHTTTCCTTCCCTTSCCHHHHHHH------TTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             cccccccccccccc---ceeeecccccCCccccccccCchHHHhhhh------cchhheeeeccccccCCcccCCCCCCH
Confidence            88999999999999   999999999999999999999999999997      899999999999999999999999999


Q ss_pred             cccccccC
Q 006236          177 VPQLSKDG  184 (655)
Q Consensus       177 l~~l~~~~  184 (655)
                      +..+...+
T Consensus       137 l~~A~~~g  144 (153)
T d1awcb_         137 FDISIDNG  144 (153)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHcC
Confidence            97765543

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=2.6e-19  Score=163.92  Aligned_cols=140  Identities=21%  Similarity=0.298  Sum_probs=129.0

Q ss_pred             hHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccCCC
Q 006236           18 SILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSD   97 (655)
Q Consensus        18 s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~~   97 (655)
                      ++||.||..|+.+.++.||+ +|+|+|..+             .+|+||||+|+ .|+.+++++|++.+ ++++.. +..
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~-~g~d~n~~d-------------~~g~TpL~~A~-~~~~ei~~~Ll~~~-a~~~~~-~~~   65 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQ-NNVNVNAQN-------------GFGRTALQVMK-LGNPEIARRLLLRG-ANPDLK-DRT   65 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTT-SCCCTTCCC-------------TTSCCHHHHCC-SSCHHHHHHHHHTT-CCTTCC-CTT
T ss_pred             HHHHHHHHcCCHHHHHHHHH-CCCCcCccC-------------Ccccccccccc-cccccccccccccc-cccccc-ccc
Confidence            78999999999999998887 899999884             89999999886 79999999999999 999998 899


Q ss_pred             CChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCC-CCCcccccCCCC
Q 006236           98 GFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDH-TIFEEEELVNIP  176 (655)
Q Consensus        98 G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GA-din~~d~~g~tp  176 (655)
                      |.++|+.++..+.   .+++++|++.+.+++..|..|.+|||+|+.      .++.+++++|+++|+ +++.+|.+|.||
T Consensus        66 ~~~~l~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~------~~~~~~~~~Ll~~~~~~~~~~d~~g~Tp  136 (156)
T d1ihba_          66 GFAVIHDAARAGF---LDTLQTLLEFQADVNIEDNEGNLPLHLAAK------EGHLRVVEFLVKHTASNVGHRNHKGDTA  136 (156)
T ss_dssp             SCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHH------TTCHHHHHHHHHHSCCCTTCCCTTSCCH
T ss_pred             Ccccccccccccc---cccccccccccccccccccccccccccccc------cccccccccccccccccccccCCCCCCH
Confidence            9999999999999   999999999999999999999999999987      899999999998876 889999999999


Q ss_pred             ccccccc
Q 006236          177 VPQLSKD  183 (655)
Q Consensus       177 l~~l~~~  183 (655)
                      +..+...
T Consensus       137 L~~A~~~  143 (156)
T d1ihba_         137 CDLARLY  143 (156)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHc
Confidence            8665443

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=7.9e-19  Score=169.95  Aligned_cols=139  Identities=19%  Similarity=0.147  Sum_probs=116.3

Q ss_pred             ccCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcc-------------------------cc----------------
Q 006236           13 LYNKSSILLELSASDDISAFKREIEEKGFDVDEPSFW-------------------------YG----------------   51 (655)
Q Consensus        13 ~~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw-------------------------~g----------------   51 (655)
                      +.+|.|+||.|+..|+.+.++.+| +.|++++..+..                         ++                
T Consensus        31 d~~G~TpL~~A~~~g~~~iv~~Ll-~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  109 (229)
T d1ixva_          31 DQDGRIPLHWSVSFQAHEITSFLL-SKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCL  109 (229)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHH-TTCTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHH
T ss_pred             CCCCCCHHHHHHHcCCccccchhh-hhhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            367899999999999988776665 489988754300                         00                


Q ss_pred             -----------------cccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChH
Q 006236           52 -----------------RRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSF  114 (655)
Q Consensus        52 -----------------~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~  114 (655)
                                       .....+..|.+|+||||+|+..|+.+++++|++.+..++|.. |.+|.||||+|+..|+   .
T Consensus       110 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~-d~~g~TpLh~A~~~~~---~  185 (229)
T d1ixva_         110 HLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQ-DKQGWTPLFHALAEGH---G  185 (229)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCC-CTTSCCHHHHHHHTTC---H
T ss_pred             ccccccchhhhhhhhhhhcccccccCCCCCCccchhhhccccccccccccccccccccc-ccccCCchhhhccccc---H
Confidence                             111233357889999999999999999999999987889988 9999999999999999   9


Q ss_pred             HHHHHHHh-CCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCC
Q 006236          115 EVVKLLLS-ASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHT  165 (655)
Q Consensus       115 eiVklLL~-~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAd  165 (655)
                      ++|++||+ .|+|++.+|.+|+||||+|+.         .+++++|+++|+|
T Consensus       186 ~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~---------~~~~~~Ll~~g~d  228 (229)
T d1ixva_         186 DAAVLLVEKYGAEYDLVDNKGAKAEDVALN---------EQVKKFFLNNVVD  228 (229)
T ss_dssp             HHHHHHHHHHCCCSCCCCTTSCCTGGGCSC---------HHHHHHHHHHCCC
T ss_pred             HHHHHHHHhcCCCCCCcCCCCCCHHHHHhh---------HHHHHHHHHcCCC
Confidence            99999996 599999999999999999863         4799999999997

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.77  E-value=1e-18  Score=166.71  Aligned_cols=158  Identities=22%  Similarity=0.204  Sum_probs=102.4

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcc---------------------cccccCCccCCCCCChHHHHHHH
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFW---------------------YGRRIGSKKMGFEERTPIMIAAM   72 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw---------------------~g~~~~~~~~d~~G~TPLh~AA~   72 (655)
                      .+|.|+||+||..|+.+.++.||. .|+++|..+-+                     .............|.+..+.+..
T Consensus        21 ~~G~t~L~~A~~~g~~e~v~~Ll~-~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (209)
T d1ot8a_          21 KTGETSLHLAARFARADAAKRLLD-AGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAAR   99 (209)
T ss_dssp             HHCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHh-hcccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            468999999999999999887776 89999887611                     01111112223445556666666


Q ss_pred             cCCHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcCh
Q 006236           73 FGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSR  152 (655)
Q Consensus        73 ~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~  152 (655)
                      .....+.+.|+..+ ++++.+ +..|.||||+++..+.   .++++.|++.+++++..|.+|.||||+|+.      .++
T Consensus       100 ~~~~~~~~~L~~~~-~~~~~~-~~~~~t~l~~~~~~~~---~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~------~g~  168 (209)
T d1ot8a_         100 LAIEGMVEDLITAD-ADINAA-DNSGKTALHWAAAVNN---TEAVNILLMHHANRDAQDDKDETPLFLAAR------EGS  168 (209)
T ss_dssp             TTCTTHHHHHHHTT-CCTTCB-CTTSCBHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTCCCHHHHHHH------TTC
T ss_pred             ccchhhhhhhhhhc-cccccc-CCCCCCcchhhcccCc---ceeeeeeccccccccccccccccccchhcc------ccH
Confidence            66666666666666 666666 6666666666666666   666666666666666666666666666665      566


Q ss_pred             HHHHHHHHhCCCCCCcccccCCCCccccccc
Q 006236          153 KRAIELLLKGDHTIFEEEELVNIPVPQLSKD  183 (655)
Q Consensus       153 ~eivelLL~~GAdin~~d~~g~tpl~~l~~~  183 (655)
                      .+++++||++|+|++.+|..|.||+..+...
T Consensus       169 ~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~  199 (209)
T d1ot8a_         169 YEASKALLDNFANREITDHMDRLPRDVASER  199 (209)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc
Confidence            6666666666666666666666666544443

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.4e-18  Score=172.98  Aligned_cols=133  Identities=23%  Similarity=0.269  Sum_probs=120.9

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcC----CHHHHHHHHHcCCCc
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFG----SVAVLKYVIETGKVN   89 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G----~~evvk~LL~~G~aD   89 (655)
                      ..|.|+||.|+..|+.+.++.||.+.|++++..+             ..|.++++.+...+    ..+++++|+++| ++
T Consensus       146 ~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~-------------~~~~~~~~~~~~~~~~~~~~~i~~~Li~~g-a~  211 (285)
T d1wdya_         146 KGGATALMDAAEKGHVEVLKILLDEMGADVNACD-------------NMGRNALIHALLSSDDSDVEAITHLLLDHG-AD  211 (285)
T ss_dssp             CCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCC-------------TTSCCHHHHHHHCSCTTTHHHHHHHHHHTT-CC
T ss_pred             ccCchHHHHHHHcCCHHHHHHHHhccCCCccccc-------------CCCCcccccccccccchHHHHHHHHHHHCC-CC
Confidence            5678999999999999999999998899999884             78888888766543    347999999999 99


Q ss_pred             cccccCCCCChHHHHHHHcCCCChHHHHHHHHhC-CCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCc
Q 006236           90 VNRACGSDGFTALHCAVAGGANSSFEVVKLLLSA-SADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFE  168 (655)
Q Consensus        90 vN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~-GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~  168 (655)
                      +|.+ +..|.||||+|+..|+   .++|++||+. |+|+|.+|.+|.||||+|+.      .++.+++++||++|||+|.
T Consensus       212 ~n~~-~~~g~t~L~~a~~~~~---~~~v~~lL~~~g~din~~d~~G~TpL~~A~~------~~~~eiv~~Ll~~GAd~n~  281 (285)
T d1wdya_         212 VNVR-GERGKTPLILAVEKKH---LGLVQRLLEQEHIEINDTDSDGKTALLLAVE------LKLKKIAELLCKRGASTDC  281 (285)
T ss_dssp             SSCC-CTTSCCHHHHHHHTTC---HHHHHHHHHSSSCCTTCCCTTSCCHHHHHHH------TTCHHHHHHHHHHSSCSCC
T ss_pred             CCcc-CCCCCCccchhhhcCc---HHHHHHHHHcCCCCCcCCCCCCCCHHHHHHH------cCCHHHHHHHHHCCCCCCc
Confidence            9998 9999999999999999   9999999975 89999999999999999997      8999999999999999998


Q ss_pred             cc
Q 006236          169 EE  170 (655)
Q Consensus       169 ~d  170 (655)
                      +|
T Consensus       282 ~d  283 (285)
T d1wdya_         282 GD  283 (285)
T ss_dssp             SS
T ss_pred             cc
Confidence            76

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.3e-18  Score=157.53  Aligned_cols=103  Identities=20%  Similarity=0.311  Sum_probs=95.9

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhc
Q 006236           65 TPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVA  144 (655)
Q Consensus        65 TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~  144 (655)
                      ++||.||..|+.++|++|+++| +|+|.+ |.+|+||||+|+..|+   .+++++|+++|+++|.+|.+|+||||+|+. 
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g-~d~n~~-d~~g~t~Lh~A~~~~~---~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~-   76 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEV-DDPSLP-NDEGITALHNAVCAGH---TEIVKFLVQFGVNVNAADSDGWTPLHCAAS-   76 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTT-SSCCCC-CTTSCCHHHHHHHHTC---HHHHHHHHHHTCCTTCCCTTCCCHHHHHHH-
T ss_pred             HHHHHHHHcCCHHHHHHHHHcC-CCcccc-cccccccccccccccc---ccccccccccccccccccccCcccccccch-
Confidence            6899999999999999999999 999998 9999999999999999   999999999999999999999999999997 


Q ss_pred             cCCCCcChHHHHHHHHhCCCCCCcccc-cCCCCcc
Q 006236          145 MKSPLHSRKRAIELLLKGDHTIFEEEE-LVNIPVP  178 (655)
Q Consensus       145 ~~~~~~g~~eivelLL~~GAdin~~d~-~g~tpl~  178 (655)
                           .++.+++++|+++|++++..+. ++.++++
T Consensus        77 -----~g~~~~v~~Ll~~ga~v~~~~~~~~~~~~~  106 (130)
T d1ycsb1          77 -----CNNVQVCKFLVESGAAVFAMTYSDMQTAAD  106 (130)
T ss_dssp             -----TTCHHHHHHHHHTTCCTTCCCSSSCCCHHH
T ss_pred             -----hhHHHHHHHHHHcCCCcccccCCCCCCHHH
Confidence                 8999999999999999997654 4666553

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=5.2e-18  Score=156.52  Aligned_cols=122  Identities=22%  Similarity=0.268  Sum_probs=110.7

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA   93 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~   93 (655)
                      ..|.|+|+. |+.++.+.++.+|. .+.++|..+             ..|.+||++++..++.++++++++.+ +++|.+
T Consensus        34 ~~g~t~L~~-A~~~~~~~v~~Ll~-~~~~~~~~~-------------~~~~~~l~~~~~~~~~~~~~~~l~~~-~~~n~~   97 (156)
T d1bd8a_          34 RFGKTALQV-MMFGSTAIALELLK-QGASPNVQD-------------TSGTSPVHDAARTGFLDTLKVLVEHG-ADVNVP   97 (156)
T ss_dssp             TTSCCHHHH-SCTTCHHHHHHHHH-TTCCTTCCC-------------TTSCCHHHHHHHTTCHHHHHHHHHTT-CCSCCC
T ss_pred             CCCCccccc-cccccccccccccc-ccccccccc-------------cccccccccccccccccccccccccc-cccccc
Confidence            568888765 56788888877775 899999874             78999999999999999999999999 999998


Q ss_pred             cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhC
Q 006236           94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKG  162 (655)
Q Consensus        94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~  162 (655)
                       +..|.||||+|+..|+   .+++++|+ .|++++.+|.+|.||||+|+.      .++.+|+++|+++
T Consensus        98 -~~~~~t~L~~A~~~~~---~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~------~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          98 -DGTGALPIHLAVQEGH---TAVVSFLA-AESDLHRRDARGLTPLELALQ------RGAQDLVDILQGH  155 (156)
T ss_dssp             -CTTSCCHHHHHHHHTC---HHHHHHHH-TTSCTTCCCTTSCCHHHHHHH------SCCHHHHHHHHTT
T ss_pred             -cCCCCeeecccccccc---cccccccc-ccccccccCCCCCCHHHHHHH------cCCHHHHHHHHhh
Confidence             9999999999999999   99999887 789999999999999999997      9999999999976

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=9.1e-18  Score=163.03  Aligned_cols=146  Identities=21%  Similarity=0.203  Sum_probs=119.5

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccc-
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNR-   92 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~-   92 (655)
                      .+|.||||+|+..++.+.++.+ .+.|++++..+             ..|.||||+|+..|+.+++++|+..+ .+... 
T Consensus        37 ~~g~TpLh~A~~~~~~~iv~~L-~~~g~d~~~~d-------------~~g~t~l~~~~~~~~~~~~~~l~~~~-~~~~~~  101 (221)
T d1iknd_          37 NLQQTPLHLAVITNQPEIAEAL-LGAGCDPELRD-------------FRGNTPLHLACEQGCLASVGVLTQSC-TTPHLH  101 (221)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHCC-CSCCCCSCCCC-------------TTCCCHHHHHHHHTCHHHHHHHHHST-TTTSSS
T ss_pred             CCCCcccccccccccccccccc-ccccccccccc-------------cccccccccccccccccccchhhhhc-cccccc
Confidence            4688888888888887755544 45888888874             78889999999888888888888875 33221 


Q ss_pred             ----ccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccC-CCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCC
Q 006236           93 ----ACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVD-VYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIF  167 (655)
Q Consensus        93 ----~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D-~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin  167 (655)
                          .....|.||||+|+..++   .+++++|+..|++++..+ .+|.||||+|+.      .++.+++++||++|+|++
T Consensus       102 ~~~~~~~~~~~t~l~~a~~~~~---~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~------~g~~~~v~~Ll~~gad~~  172 (221)
T d1iknd_         102 SILKATNYNGHTCLHLASIHGY---LGIVELLVSLGADVNAQEPCNGRTALHLAVD------LQNPDLVSLLLKCGADVN  172 (221)
T ss_dssp             CGGGCCCTTCCCHHHHHHHTTC---HHHHHHHHHHTCCTTCCCTTTCCCHHHHHHH------TTCHHHHHHHHTTTCCSC
T ss_pred             ccccccccccchhhhHHhhcCC---hhheeeecccCcccccccccCCCCccccccc------cccHHHHHHHHhcCCccc
Confidence                124568899999999888   999999999999988765 579999999997      899999999999999999


Q ss_pred             cccccCCCCccccccc
Q 006236          168 EEEELVNIPVPQLSKD  183 (655)
Q Consensus       168 ~~d~~g~tpl~~l~~~  183 (655)
                      .+|.+|.+|+..+...
T Consensus       173 ~~~~~G~tpl~~A~~~  188 (221)
T d1iknd_         173 RVTYQGYSPYQLTWGR  188 (221)
T ss_dssp             CCCTTCCCGGGGCTTS
T ss_pred             ccCCCCCCHHHHHHHC
Confidence            9999999999765543

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.72  E-value=1.1e-18  Score=166.57  Aligned_cols=134  Identities=22%  Similarity=0.325  Sum_probs=115.5

Q ss_pred             HHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCC
Q 006236           31 AFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGA  110 (655)
Q Consensus        31 ~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~  110 (655)
                      .++++|+++|+|||.+.            |.+|+||||+||.+|+.+++++||+.| +++|.. +..+.++++.++..++
T Consensus         3 ~~v~~Ll~~g~din~~~------------d~~G~t~L~~A~~~g~~e~v~~Ll~~g-~~~n~~-~~~~~~~~~~~~~~~~   68 (209)
T d1ot8a_           3 QVISDLLAQGAELNATM------------DKTGETSLHLAARFARADAAKRLLDAG-ADANSQ-DNTGRTPLHAAVAADA   68 (209)
T ss_dssp             HHHHHHHHHHHHHHHHH------------HHHCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCC-CTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHHCCCCcCcCc------------CCCCCCHHHHHHHcCCHHHHHHHHhhc-cccccc-cccccccccccccccc
Confidence            35556666999999742            488999999999999999999999999 999998 8889999998887766


Q ss_pred             C-------------------------------ChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHH
Q 006236          111 N-------------------------------SSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELL  159 (655)
Q Consensus       111 ~-------------------------------~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelL  159 (655)
                      .                               ....+.+.|+..+++++.+|..|.|||++++.      .+..++++.|
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~------~~~~~~~~~l  142 (209)
T d1ot8a_          69 MGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAA------VNNTEAVNIL  142 (209)
T ss_dssp             HHHHHHHHTCTTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHH------TTCHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcc------cCcceeeeee
Confidence            2                               13556778899999999999999999999987      8899999999


Q ss_pred             HhCCCCCCcccccCCCCcccccccC
Q 006236          160 LKGDHTIFEEEELVNIPVPQLSKDG  184 (655)
Q Consensus       160 L~~GAdin~~d~~g~tpl~~l~~~~  184 (655)
                      +..+++++..|.+|.+|+..+...+
T Consensus       143 ~~~~~~~~~~d~~g~TpL~~A~~~g  167 (209)
T d1ot8a_         143 LMHHANRDAQDDKDETPLFLAAREG  167 (209)
T ss_dssp             HHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             ccccccccccccccccccchhcccc
Confidence            9999999999999999996655543

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=9.9e-18  Score=174.96  Aligned_cols=146  Identities=24%  Similarity=0.264  Sum_probs=128.5

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA   93 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~   93 (655)
                      ..+.++|++|+..++.+.++.++. .+.+++..             +..|.||||.|+..++.+++++|+++| ++++..
T Consensus       229 ~~~~t~l~~a~~~~~~~~~~~~~~-~~~~~~~~-------------~~~g~~~l~~a~~~~~~~i~~~Ll~~g-~~~~~~  293 (408)
T d1n11a_         229 VQGVTPLHLAAQEGHAEMVALLLS-KQANGNLG-------------NKSGLTPLHLVAQEGHVPVADVLIKHG-VMVDAT  293 (408)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHT-TTCCTTCC-------------CTTCCCHHHHHHHHTCHHHHHHHHHHT-CCTTCC
T ss_pred             CCCCCHHHHHHHhCcHhHhhhhhc-cccccccc-------------cCCCCChhhhhhhcCcHHHHHHHHHCC-Cccccc
Confidence            345678888887777777666554 67777766             488999999999999999999999999 999988


Q ss_pred             cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccC
Q 006236           94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELV  173 (655)
Q Consensus        94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g  173 (655)
                       +..+.||||.++..++   .++++++++.|+++|.+|.+|+||||+|++      .++.++|++||++||+++.+|.+|
T Consensus       294 -~~~~~t~L~~~~~~~~---~~~~~~ll~~g~~in~~d~~G~T~Lh~A~~------~g~~~iv~~Ll~~GAd~n~~d~~G  363 (408)
T d1n11a_         294 -TRMGYTPLHVASHYGN---IKLVKFLLQHQADVNAKTKLGYSPLHQAAQ------QGHTDIVTLLLKNGASPNEVSSDG  363 (408)
T ss_dssp             -CSSCCCHHHHHHHSSC---SHHHHHHHHTTCCTTCCCTTSCCHHHHHHH------TTCHHHHHHHHHTTCCSCCCCSSS
T ss_pred             -cccccccchhhcccCc---ceeeeeeccccccccccCCCCCCHHHHHHH------cCCHHHHHHHHHCCCCCCCCCCCC
Confidence             8899999999999999   999999999999999999999999999997      899999999999999999999999


Q ss_pred             CCCcccccccC
Q 006236          174 NIPVPQLSKDG  184 (655)
Q Consensus       174 ~tpl~~l~~~~  184 (655)
                      .+|+..+...+
T Consensus       364 ~t~L~~A~~~~  374 (408)
T d1n11a_         364 TTPLAIAKRLG  374 (408)
T ss_dssp             CCHHHHHHHTT
T ss_pred             CCHHHHHHHcC
Confidence            99996665443

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=6.2e-18  Score=173.15  Aligned_cols=147  Identities=12%  Similarity=0.027  Sum_probs=112.0

Q ss_pred             ccCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCH---HHHHHHHHcCCCc
Q 006236           13 LYNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSV---AVLKYVIETGKVN   89 (655)
Q Consensus        13 ~~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~---evvk~LL~~G~aD   89 (655)
                      +.+|.|+||+||..|+.+.|+.||+ .|++++.++             ..|+||||+|+..++.   +.+..|++....+
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~-~gad~~~~d-------------~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~  169 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVK-HGSNRLYGD-------------NMGESCLVKAVKSVNNYDSGTFEALLDYLYPC  169 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTBCC-------------TTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGG
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCcCC-------------cccccHHHHhhhcccchhhhhHHHHHHHHhhh
Confidence            4668899999999999988777765 899999885             8899999999987652   2223333332245


Q ss_pred             cccccCCCCChHHHHHHHcCCC-ChHH--------HHHHHHhCCCC----------------------------------
Q 006236           90 VNRACGSDGFTALHCAVAGGAN-SSFE--------VVKLLLSASAD----------------------------------  126 (655)
Q Consensus        90 vN~~~d~~G~TpLH~Aa~~G~~-~~~e--------iVklLL~~GAD----------------------------------  126 (655)
                      ++.. |..|+||||+++..+.. ....        ++.+++..+..                                  
T Consensus       170 ~~~~-d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (301)
T d1sw6a_         170 LILE-DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWII  248 (301)
T ss_dssp             GGEE-CTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHH
T ss_pred             hhhc-ccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHH
Confidence            6666 88899999998865542 1122        23344443322                                  


Q ss_pred             ---CcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCcccccCCCCcccc
Q 006236          127 ---VNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQL  180 (655)
Q Consensus       127 ---vn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~tpl~~l  180 (655)
                         +|.+|.+|+||||+|+.      .++.++|++||++||++++.|..|.||++.+
T Consensus       249 ~~~in~~D~~G~TpLh~A~~------~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A  299 (301)
T d1sw6a_         249 ANMLNAQDSNGDTCLNIAAR------LGNISIVDALLDYGADPFIANKSGLRPVDFG  299 (301)
T ss_dssp             HHTTTCCCTTSCCHHHHHHH------HCCHHHHHHHHHTTCCTTCCCTTSCCGGGGT
T ss_pred             hcCccCCCCCCCCHHHHHHH------cCCHHHHHHHHHCCCCCCCCCCCCCCHHHHc
Confidence               68899999999999998      9999999999999999999999999998544

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.71  E-value=3.2e-17  Score=162.21  Aligned_cols=138  Identities=17%  Similarity=0.228  Sum_probs=115.9

Q ss_pred             ccCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcc------ccc-------------------c--------------
Q 006236           13 LYNKSSILLELSASDDISAFKREIEEKGFDVDEPSFW------YGR-------------------R--------------   53 (655)
Q Consensus        13 ~~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw------~g~-------------------~--------------   53 (655)
                      +.+|.||||+|+..|+.+.++.||+ +|+++|.++..      +..                   .              
T Consensus        71 d~~G~TpLh~A~~~g~~~iv~~Ll~-~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  149 (277)
T d2fo1e1          71 DCDENTPLMLAVLARRRRLVAYLMK-AGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMI  149 (277)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHH-TTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHH
T ss_pred             CCCCCeeeccccccccccccccccc-cccccccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHH
Confidence            4679999999999999888877665 89999987500      000                   0              


Q ss_pred             ----------------------------cCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCChHHHHH
Q 006236           54 ----------------------------IGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCA  105 (655)
Q Consensus        54 ----------------------------~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~A  105 (655)
                                                  ......+..|.||||+++..++.+++++++.....+++.. |..|.||||+|
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~-d~~g~tpL~~A  228 (277)
T d2fo1e1         150 VAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQ-DEDGKTPIMLA  228 (277)
T ss_dssp             HHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCC-CTTCCCHHHHH
T ss_pred             HHhcccccccccccccccccccccccccccccccccCCCCcccccccccccccccccccccccccccc-CCCCCCHHHHH
Confidence                                        0112235679999999999999999998776544888888 99999999999


Q ss_pred             HHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHh
Q 006236          106 VAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLK  161 (655)
Q Consensus       106 a~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~  161 (655)
                      +..|+   .++|++|+++|+|+|.+|.+|+||||+|+.      .++.+||++|++
T Consensus       229 ~~~g~---~~iv~~Ll~~gadin~~d~~G~T~L~~A~~------~~~~~iv~lL~~  275 (277)
T d2fo1e1         229 AQEGR---IEVVMYLIQQGASVEAVDATDHTARQLAQA------NNHHNIVDIFDR  275 (277)
T ss_dssp             HHHTC---HHHHHHHHHTTCCSSCCCSSSCCHHHHHHH------TTCHHHHHHHHT
T ss_pred             HHcCC---HHHHHHHHHCcCCCCCcCCCCCCHHHHHHH------cCCHHHHHHHHH
Confidence            99999   999999999999999999999999999998      899999999986

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=2.8e-17  Score=171.48  Aligned_cols=133  Identities=20%  Similarity=0.325  Sum_probs=116.5

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA   93 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~   93 (655)
                      ..|.++|+.++..++.+.++.+|. .|++++..+             ..+.||||+|+..++.++++++++.| +++|.+
T Consensus       262 ~~g~~~l~~a~~~~~~~i~~~Ll~-~g~~~~~~~-------------~~~~t~L~~~~~~~~~~~~~~ll~~g-~~in~~  326 (408)
T d1n11a_         262 KSGLTPLHLVAQEGHVPVADVLIK-HGVMVDATT-------------RMGYTPLHVASHYGNIKLVKFLLQHQ-ADVNAK  326 (408)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHH-HTCCTTCCC-------------SSCCCHHHHHHHSSCSHHHHHHHHTT-CCTTCC
T ss_pred             CCCCChhhhhhhcCcHHHHHHHHH-CCCcccccc-------------ccccccchhhcccCcceeeeeecccc-cccccc
Confidence            457899999999999988777765 899999874             78899999999999999999999999 999999


Q ss_pred             cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHH---HhCCCCCCccc
Q 006236           94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELL---LKGDHTIFEEE  170 (655)
Q Consensus        94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelL---L~~GAdin~~d  170 (655)
                       |.+|.||||+|+..|+   .++|++||++|||+|.+|.+|.||||+|+.      .|+.++|++|   ++.+.++.+.+
T Consensus       327 -d~~G~T~Lh~A~~~g~---~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~------~~~~~iv~~L~~~~~~~~~~~~~~  396 (408)
T d1n11a_         327 -TKLGYSPLHQAAQQGH---TDIVTLLLKNGASPNEVSSDGTTPLAIAKR------LGYISVTDVLKVVTDETSFVLVSD  396 (408)
T ss_dssp             -CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCSCCCCSSSCCHHHHHHH------TTCHHHHHHHHHHCCCCSSCC---
T ss_pred             -CCCCCCHHHHHHHcCC---HHHHHHHHHCCCCCCCCCCCCCCHHHHHHH------cCCHHHHHHHHHHHhccccccccc
Confidence             9999999999999999   999999999999999999999999999997      8888888755   34666666544


Q ss_pred             c
Q 006236          171 E  171 (655)
Q Consensus       171 ~  171 (655)
                      .
T Consensus       397 ~  397 (408)
T d1n11a_         397 K  397 (408)
T ss_dssp             -
T ss_pred             c
Confidence            3

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=2.9e-17  Score=163.24  Aligned_cols=148  Identities=19%  Similarity=0.208  Sum_probs=105.4

Q ss_pred             CchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc--
Q 006236           16 KSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA--   93 (655)
Q Consensus        16 g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~--   93 (655)
                      +.|.|+.|+..|+.+.|+.||+ +|++||.++            +..|+||||+|+..|+.+++++|++.+ .+++..  
T Consensus         5 ~~~~L~~Ai~~~~~e~vk~Ll~-~G~din~~~------------~~~g~tpL~~A~~~~~~eiv~~L~~~~-~~~~~~~~   70 (285)
T d1wdya_           5 DNHLLIKAVQNEDVDLVQQLLE-GGANVNFQE------------EEGGWTPLHNAVQMSREDIVELLLRHG-ADPVLRKK   70 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHH-TTCCTTCCC------------TTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCT
T ss_pred             CcHHHHHHHHcCCHHHHHHHHH-CCCCcCccC------------CCCCCCHHHHHHHcCCHHHhhhhcccc-cccccccc
Confidence            4578899999999998888775 899999875            567888888888888888888888876 332111  


Q ss_pred             -------------------------------------------------------------------------cCCCCCh
Q 006236           94 -------------------------------------------------------------------------CGSDGFT  100 (655)
Q Consensus        94 -------------------------------------------------------------------------~d~~G~T  100 (655)
                                                                                               ....|.|
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  150 (285)
T d1wdya_          71 NGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGAT  150 (285)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCC
T ss_pred             ccchhhHHHhhcCCccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCch
Confidence                                                                                     1244778


Q ss_pred             HHHHHHHcCCC-----------------------------------ChHHHHHHHHhCCCCCcccCCCCCCccchhhhcc
Q 006236          101 ALHCAVAGGAN-----------------------------------SSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAM  145 (655)
Q Consensus       101 pLH~Aa~~G~~-----------------------------------~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~  145 (655)
                      |||+|+..|+.                                   +..+++++|+++|++++.+|.+|.||||+|+.  
T Consensus       151 ~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~--  228 (285)
T d1wdya_         151 ALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVE--  228 (285)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHH--
T ss_pred             HHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhh--
Confidence            88888888750                                   12345566666666677777777777777776  


Q ss_pred             CCCCcChHHHHHHHHh-CCCCCCcccccCCCCccccccc
Q 006236          146 KSPLHSRKRAIELLLK-GDHTIFEEEELVNIPVPQLSKD  183 (655)
Q Consensus       146 ~~~~~g~~eivelLL~-~GAdin~~d~~g~tpl~~l~~~  183 (655)
                          .++.+++++||+ .|++++.+|.+|.||+..+.+.
T Consensus       229 ----~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~  263 (285)
T d1wdya_         229 ----KKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVEL  263 (285)
T ss_dssp             ----TTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHT
T ss_pred             ----cCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHc
Confidence                667777777775 4777777777777777544433

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=4.6e-18  Score=152.60  Aligned_cols=108  Identities=22%  Similarity=0.268  Sum_probs=99.6

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCC-Cccchh
Q 006236           63 ERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGN-KPVDLI  141 (655)
Q Consensus        63 G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~-TPLhlA  141 (655)
                      +.++||+||..|++++|++||++| +|+|.. +..|.||||+|+ .|+   .+++++|+++|+++|.+|..|. ||||+|
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~g-ad~n~~-~~~g~t~l~~a~-~g~---~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A   76 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAG-ANPNAP-NSYGRRPIQVMM-MGS---ARVAELLLLHGAEPNCADPATLTRPVHDA   76 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTT-CCTTCC-CSSSCCTTTSSC-TTC---HHHHHHHHTTTCCCCCCCTTTCCCHHHHH
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcC-Cccccc-cccccccccccc-ccc---ccccccccccccccccccccccccccccc
Confidence            468999999999999999999999 999998 999999999875 688   9999999999999999999876 699999


Q ss_pred             hhccCCCCcChHHHHHHHHhCCCCCCcccccCCCCcccccc
Q 006236          142 PVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLSK  182 (655)
Q Consensus       142 a~~~~~~~~g~~eivelLL~~GAdin~~d~~g~tpl~~l~~  182 (655)
                      +.      .++.+++++|+++|++++.+|.+|.+|+..+..
T Consensus        77 ~~------~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~  111 (125)
T d1bi7b_          77 AR------EGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEE  111 (125)
T ss_dssp             HH------HTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHH
T ss_pred             cc------cccccccccccccccccccccCCCCCHHHHHHH
Confidence            97      899999999999999999999999999865543

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1e-16  Score=146.41  Aligned_cols=125  Identities=22%  Similarity=0.234  Sum_probs=112.3

Q ss_pred             ccCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccc
Q 006236           13 LYNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNR   92 (655)
Q Consensus        13 ~~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~   92 (655)
                      +.+|.|+|| +|+.++.+.++.+| +.|++++..+             ..|.++|+.++..+..+++++|++.+ .+++.
T Consensus        31 d~~g~TpL~-~A~~~~~ei~~~Ll-~~~a~~~~~~-------------~~~~~~l~~~~~~~~~~~~~~l~~~~-~~~~~   94 (156)
T d1ihba_          31 NGFGRTALQ-VMKLGNPEIARRLL-LRGANPDLKD-------------RTGFAVIHDAARAGFLDTLQTLLEFQ-ADVNI   94 (156)
T ss_dssp             CTTSCCHHH-HCCSSCHHHHHHHH-HTTCCTTCCC-------------TTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTC
T ss_pred             CCccccccc-cccccccccccccc-cccccccccc-------------ccCccccccccccccccccccccccc-ccccc
Confidence            356889886 55688887666555 5899999874             88999999999999999999999999 99998


Q ss_pred             ccCCCCChHHHHHHHcCCCChHHHHHHHHhCCC-CCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCC
Q 006236           93 ACGSDGFTALHCAVAGGANSSFEVVKLLLSASA-DVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGD  163 (655)
Q Consensus        93 ~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GA-Dvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~G  163 (655)
                      . +..|.++||+|+..++   .+++++|+++++ +++.+|.+|.||||+|+.      .++.+++++|+++|
T Consensus        95 ~-~~~~~~~l~~a~~~~~---~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~------~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          95 E-DNEGNLPLHLAAKEGH---LRVVEFLVKHTASNVGHRNHKGDTACDLARL------YGRNEVVSLMQANG  156 (156)
T ss_dssp             C-CTTSCCHHHHHHHTTC---HHHHHHHHHHSCCCTTCCCTTSCCHHHHHHH------TTCHHHHHHHHHTC
T ss_pred             c-cccccccccccccccc---ccccccccccccccccccCCCCCCHHHHHHH------cCCHHHHHHHHhcC
Confidence            8 9999999999999999   999999999885 899999999999999997      89999999999987

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=2.1e-16  Score=143.79  Aligned_cols=122  Identities=25%  Similarity=0.283  Sum_probs=109.4

Q ss_pred             ccCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCcccc
Q 006236           13 LYNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNR   92 (655)
Q Consensus        13 ~~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~   92 (655)
                      +..|.|+||+|+..++.+.+..++. .....+..             +..+.++++.++...+.+++++++..+ ++++.
T Consensus        31 ~~~g~t~L~~a~~~~~~~~~~~~~~-~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~   95 (153)
T d1awcb_          31 DWLGTSPLHLAAQYGHFSTTEVLLR-AGVSRDAR-------------TKVDRTPLHMAASEGHANIVEVLLKHG-ADVNA   95 (153)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHT-TTCCTTCC-------------CTTCCCHHHHHHHHTCHHHHHHHHTTT-CCTTC
T ss_pred             ccCCCcccccccccccccccccccc-cccccccc-------------ccccccccccccccccceeeecccccC-Ccccc
Confidence            4678999999999999998877765 44443333             367889999999999999999999999 99999


Q ss_pred             ccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHH
Q 006236           93 ACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELL  159 (655)
Q Consensus        93 ~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelL  159 (655)
                      + +.+|+||||+|+..|+   .++|++|++.|+|++.+|.+|.||||+|+.      .++.+|+++|
T Consensus        96 ~-~~~g~T~L~~A~~~g~---~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~------~g~~eiv~lL  152 (153)
T d1awcb_          96 K-DMLKMTALHWATEHNH---QEVVELLIKYGADVHTQSKFCKTAFDISID------NGNEDLAEIL  152 (153)
T ss_dssp             C-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHH------TTCHHHHHHH
T ss_pred             c-cccCchHHHhhhhcch---hheeeeccccccCCcccCCCCCCHHHHHHH------cCCHHHHHhC
Confidence            8 9999999999999999   999999999999999999999999999997      8999999976

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.67  E-value=1.5e-18  Score=181.94  Aligned_cols=137  Identities=15%  Similarity=0.027  Sum_probs=112.8

Q ss_pred             cCCchHHHHHHHhCCHHHHHH--HHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccc
Q 006236           14 YNKSSILLELSASDDISAFKR--EIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVN   91 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~--LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN   91 (655)
                      ..|.|+|+.||..|+.+.++.  +|.+.|++||.++             .+|.||||+||.+|+.++|++|++.| ++++
T Consensus        88 ~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~-------------~~g~taL~~Aa~~G~~~~v~~Ll~~g-~~~~  153 (346)
T d2ajaa1          88 IKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQ-------------AENYQAFRLAAENGHLHVLNRLCELA-PTEI  153 (346)
T ss_dssp             CCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--C-------------HHHHHHHHHHHHTTCHHHHHHHHHSC-TTTH
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccC-------------CCCCCHHHHHHHCCCHHHHHHHHHcC-CCcc
Confidence            457899999999999876644  4777999999985             88999999999999999999999999 9998


Q ss_pred             ccc-CCCCChHHHHHHHcCCCChHHHHHHHHhCCCCC---cccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCC
Q 006236           92 RAC-GSDGFTALHCAVAGGANSSFEVVKLLLSASADV---NCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIF  167 (655)
Q Consensus        92 ~~~-d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADv---n~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin  167 (655)
                      ... +.+|.||||+|+..|+   .++|++|++.|++.   +..+.+|.||++.|+.      .|+.+|+++|++.|++++
T Consensus       154 ~~~~~~~g~t~L~~Aa~~g~---~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~------~g~~~iv~~Ll~~ga~~~  224 (346)
T d2ajaa1         154 MAMIQAENYHAFRLAAENGH---LHVLNRLCELAPTEATAMIQAENYYAFRWAAVG------RGHHNVINFLLDCPVMLA  224 (346)
T ss_dssp             HHHHSHHHHHHHHHHHHTTC---HHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHST------TCCHHHHHHHTTSHHHHH
T ss_pred             ccccccCCCChhHHHHHHhh---HHHHHHHHHcCCcccccccccCCCcchhhHHhh------cCHHHHHHHHHhCCCCcc
Confidence            761 2469999999999999   99999999999875   3445567788888875      899999999999999887


Q ss_pred             cccccC
Q 006236          168 EEEELV  173 (655)
Q Consensus       168 ~~d~~g  173 (655)
                      ..+...
T Consensus       225 ~~~~~~  230 (346)
T d2ajaa1         225 YAEIHE  230 (346)
T ss_dssp             HHHHCT
T ss_pred             hHHHHH
Confidence            654443

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.67  E-value=1.5e-16  Score=159.17  Aligned_cols=81  Identities=28%  Similarity=0.390  Sum_probs=77.2

Q ss_pred             ccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCC
Q 006236           57 KKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNK  136 (655)
Q Consensus        57 ~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~T  136 (655)
                      ...+..|.||||+|+..|+.+++++|++.| +|+|.+ +.+|+||||+|+..|+   .++|++||++|||++.+|.+|.|
T Consensus       193 ~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g-~din~~-~~~g~TpL~~A~~~g~---~~iv~lLl~~Gadv~~~d~~G~T  267 (291)
T d1s70b_         193 VRHAKSGGTALHVAAAKGYTEVLKLLIQAR-YDVNIK-DYDGWTPLHAAAHWGK---EEACRILVENLCDMEAVNKVGQT  267 (291)
T ss_dssp             CCCTTTCCCHHHHHHHHTCHHHHHHHHTTT-CCTTCC-CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             ccccCCCCChhhHHHHcCChhhhcccccce-eccccc-ccCCCCHHHHHHHcCC---HHHHHHHHHCCCCCCCcCCCCCC
Confidence            345788999999999999999999999999 999998 9999999999999999   99999999999999999999999


Q ss_pred             ccchhh
Q 006236          137 PVDLIP  142 (655)
Q Consensus       137 PLhlAa  142 (655)
                      |||+|+
T Consensus       268 aL~~A~  273 (291)
T d1s70b_         268 AFDVAD  273 (291)
T ss_dssp             TTTSCC
T ss_pred             HHHHHH
Confidence            999996

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=4.6e-16  Score=150.82  Aligned_cols=134  Identities=22%  Similarity=0.215  Sum_probs=115.4

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRA   93 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~   93 (655)
                      ..|.++|++++..+..+.++.++. .+.+.....       ........|.||||+|+..++.+++++|+..+ ++++..
T Consensus        70 ~~g~t~l~~~~~~~~~~~~~~l~~-~~~~~~~~~-------~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~-~~~~~~  140 (221)
T d1iknd_          70 FRGNTPLHLACEQGCLASVGVLTQ-SCTTPHLHS-------ILKATNYNGHTCLHLASIHGYLGIVELLVSLG-ADVNAQ  140 (221)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHH-STTTTSSSC-------GGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHT-CCTTCC
T ss_pred             cccccccccccccccccccchhhh-hcccccccc-------cccccccccchhhhHHhhcCChhheeeecccC-cccccc
Confidence            567899999999999988777766 665544332       12223567899999999999999999999999 999887


Q ss_pred             cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHHHHHhCCCC
Q 006236           94 CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHT  165 (655)
Q Consensus        94 ~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAd  165 (655)
                      .+.+|.||||+|+..|+   .+++++|+++|+|++.+|.+|.||||+|+.      .++.+++++|++.+.+
T Consensus       141 ~~~~G~T~L~~A~~~g~---~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~------~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         141 EPCNGRTALHLAVDLQN---PDLVSLLLKCGADVNRVTYQGYSPYQLTWG------RPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             CTTTCCCHHHHHHHTTC---HHHHHHHHTTTCCSCCCCTTCCCGGGGCTT------SSCHHHHHHHHTTSCG
T ss_pred             cccCCCCcccccccccc---HHHHHHHHhcCCcccccCCCCCCHHHHHHH------CCCHHHHHHHHHcCCc
Confidence            56789999999999999   999999999999999999999999999986      8899999999988664

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=4.3e-16  Score=146.02  Aligned_cols=132  Identities=17%  Similarity=0.138  Sum_probs=111.1

Q ss_pred             cCCchHHHHHHHhCCHHHHHHHHHhcCCCCCCCCcc----------------------ccc-------------------
Q 006236           14 YNKSSILLELSASDDISAFKREIEEKGFDVDEPSFW----------------------YGR-------------------   52 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd~~~vk~LL~~~GadIn~~dlw----------------------~g~-------------------   52 (655)
                      .+|.|+||.|+..|+.+.++.||. .|++++.....                      ...                   
T Consensus        38 ~~g~TpL~~A~~~~~~~iv~~Ll~-~ga~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  116 (228)
T d1k1aa_          38 NLRQTPLHLAVITTLPSVVRLLVT-AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHV  116 (228)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHH
T ss_pred             CCCCccceehhccccccccccccc-ccccccccccccccccccccccccccchhhhhhcccccccccccccccccccccc
Confidence            568999999999999988877776 89888776500                      000                   


Q ss_pred             -----------------ccCCccCCCCCChHHHHHHHcCCHHHHHHHHHcCCCccccccCCCCChHHHHHHHcCCCChHH
Q 006236           53 -----------------RIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFE  115 (655)
Q Consensus        53 -----------------~~~~~~~d~~G~TPLh~AA~~G~~evvk~LL~~G~aDvN~~~d~~G~TpLH~Aa~~G~~~~~e  115 (655)
                                       .......+..|.++|+.|+..+...+++++++.+ .+++.+ +..|.||||+|+..|+   .+
T Consensus       117 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~-~~~~~~-d~~g~t~L~~A~~~g~---~~  191 (228)
T d1k1aa_         117 AVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHG-ANVNAQ-MYSGSSALHSASGRGL---LP  191 (228)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCB-CTTSCBHHHHHHHHTC---HH
T ss_pred             ccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhhhhhhhc-cccccc-cccCcchHHHHHHcCC---HH
Confidence                             0011223567899999999999999999999999 999988 9999999999999999   99


Q ss_pred             HHHHHHhCCCCCcccCCCCCCccchhhhccCCCCcChHHHHH
Q 006236          116 VVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIE  157 (655)
Q Consensus       116 iVklLL~~GADvn~~D~~G~TPLhlAa~~~~~~~~g~~eive  157 (655)
                      ++++|+++|+|+|.+|.+|+||||+|+.      .++.+||+
T Consensus       192 ~v~~Ll~~Gad~n~~d~~G~TpL~~A~~------~~~~divk  227 (228)
T d1k1aa_         192 LVRTLVRSGADSSLKNCHNDTPLMVARS------RRVIDILR  227 (228)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCTTTTCSS------HHHHHHHT
T ss_pred             HHHHHHHCCCCCCCCCCCCCCHHHHHHh------CCCccccC
Confidence            9999999999999999999999999986      78888774

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=3.4e-15  Score=139.31  Aligned_cols=111  Identities=20%  Similarity=0.235  Sum_probs=97.2

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCccccc-----cCCCCChHHHHHHHcCCCChHHHHHHHHhCCCCCcccCCCCCCccc
Q 006236           65 TPIMIAAMFGSVAVLKYVIETGKVNVNRA-----CGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVD  139 (655)
Q Consensus        65 TPLh~AA~~G~~evvk~LL~~G~aDvN~~-----~d~~G~TpLH~Aa~~G~~~~~eiVklLL~~GADvn~~D~~G~TPLh  139 (655)
                      ..|+.|+..+++..+..++..| +|++..     .+..|+||||+|+..+..+..++|++|+++|+|+|.+|.+|+||||
T Consensus         8 ~~L~~Av~~~dl~~l~~~~~~g-~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh   86 (154)
T d1dcqa1           8 HSLCEAVKTRDIFGLLQAYADG-VDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALH   86 (154)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTT-CCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHcC-CCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccccc
Confidence            3466888999999999999998 887753     2567999999999875544599999999999999999999999999


Q ss_pred             hhhhccCCCCcChHHHHHHHHhCCCCCCcccccCCCCcccccc
Q 006236          140 LIPVAMKSPLHSRKRAIELLLKGDHTIFEEEELVNIPVPQLSK  182 (655)
Q Consensus       140 lAa~~~~~~~~g~~eivelLL~~GAdin~~d~~g~tpl~~l~~  182 (655)
                      +|+.      .++.+++++|+++|++++.+|.+|.+|+..+..
T Consensus        87 ~A~~------~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~  123 (154)
T d1dcqa1          87 YCCL------TDNAECLKLLLRGKASIEIANESGETPLDIAKR  123 (154)
T ss_dssp             HHHH------TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             cccc------cccccccccccccCccccccCCCCCCHHHHHHH
Confidence            9997      899999999999999999999999999965543

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.49  E-value=4.7e-16  Score=162.73  Aligned_cols=156  Identities=11%  Similarity=0.061  Sum_probs=112.7

Q ss_pred             HhCCHHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCCHHHHHH---HHHcCCCccccccCCCCChH
Q 006236           25 ASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKY---VIETGKVNVNRACGSDGFTA  101 (655)
Q Consensus        25 a~gd~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~~evvk~---LL~~G~aDvN~~~d~~G~Tp  101 (655)
                      ...+.+.+.+++...+++++....-+.  .+....|..|.||||+||.+|+.+++++   |++.| +++|.. +.+|+||
T Consensus        54 ~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~-~~in~~-~~~g~ta  129 (346)
T d2ajaa1          54 GTKNMEQVRQLLCLYYAHYNRNAKQLW--SDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSD-EIVKVI-QAENYQA  129 (346)
T ss_dssp             CSSHHHHHHHHHHHHHHHTTTTCTTHH--HHHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CC-SSCC---CHHHHHH
T ss_pred             hhccHHHHHHHHHHcchhhccchhhhh--hHHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCC-Cccccc-CCCCCCH
Confidence            345567777777666666655431111  1122346789999999999999887766   78888 999998 9999999


Q ss_pred             HHHHHHcCCCChHHHHHHHHhCCCCCcccC--CCCCCccchhhhccCCCCcChHHHHHHHHhCCCCCCc---ccccCCCC
Q 006236          102 LHCAVAGGANSSFEVVKLLLSASADVNCVD--VYGNKPVDLIPVAMKSPLHSRKRAIELLLKGDHTIFE---EEELVNIP  176 (655)
Q Consensus       102 LH~Aa~~G~~~~~eiVklLL~~GADvn~~D--~~G~TPLhlAa~~~~~~~~g~~eivelLL~~GAdin~---~d~~g~tp  176 (655)
                      ||+|+..|+   .++|++|++.|++++..+  .+|.||||+|+.      .|+.+||++|++.|++...   .+.++.++
T Consensus       130 L~~Aa~~G~---~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~------~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~  200 (346)
T d2ajaa1         130 FRLAAENGH---LHVLNRLCELAPTEIMAMIQAENYHAFRLAAE------NGHLHVLNRLCELAPTEATAMIQAENYYAF  200 (346)
T ss_dssp             HHHHHHTTC---HHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHH------TTCHHHHHHHHHSCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHCCC---HHHHHHHHHcCCCccccccccCCCChhHHHHH------HhhHHHHHHHHHcCCcccccccccCCCcch
Confidence            999999999   999999999999999876  469999999998      9999999999999987643   34445555


Q ss_pred             ccccccc-Cccccccccc
Q 006236          177 VPQLSKD-GTEKKEYPID  193 (655)
Q Consensus       177 l~~l~~~-~~~~keypvd  193 (655)
                      +..+... ..+..++.++
T Consensus       201 l~~A~~~g~~~iv~~Ll~  218 (346)
T d2ajaa1         201 RWAAVGRGHHNVINFLLD  218 (346)
T ss_dssp             HHHHSTTCCHHHHHHHTT
T ss_pred             hhHHhhcCHHHHHHHHHh
Confidence            5433332 2333444443

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.35  E-value=4e-13  Score=136.82  Aligned_cols=109  Identities=21%  Similarity=0.184  Sum_probs=82.2

Q ss_pred             cCCchHHHHHHHhCC------HHHHHHHHHhcCCCCCCCCcccccccCCccCCCCCChHHHHHHHcCC----HH------
Q 006236           14 YNKSSILLELSASDD------ISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGS----VA------   77 (655)
Q Consensus        14 ~~g~s~LL~AAa~gd------~~~vk~LL~~~GadIn~~dlw~g~~~~~~~~d~~G~TPLh~AA~~G~----~e------   77 (655)
                      ..|.||||.|+..++      ++.+..++.   .+++..             |..|+||||+++..+.    ..      
T Consensus       138 ~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~---~~~~~~-------------d~~g~t~lh~~~~~~~~~~~~~~~~~~~  201 (301)
T d1sw6a_         138 NMGESCLVKAVKSVNNYDSGTFEALLDYLY---PCLILE-------------DSMNRTILHHIIITSGMTGCSAAAKYYL  201 (301)
T ss_dssp             TTCCCHHHHHHHSSHHHHTTCHHHHHHHHG---GGGGEE-------------CTTCCCHHHHHHHHHTSTTCHHHHHHHH
T ss_pred             cccccHHHHhhhcccchhhhhHHHHHHHHh---hhhhhc-------------ccccCCHHHHHHHHhCccccHHHHHHHH
Confidence            458999999887553      344444443   345554             4789999999886554    22      


Q ss_pred             --HHHHHHHcCCCc------------------------------------cccccCCCCChHHHHHHHcCCCChHHHHHH
Q 006236           78 --VLKYVIETGKVN------------------------------------VNRACGSDGFTALHCAVAGGANSSFEVVKL  119 (655)
Q Consensus        78 --vvk~LL~~G~aD------------------------------------vN~~~d~~G~TpLH~Aa~~G~~~~~eiVkl  119 (655)
                        ++.+++..+..+                                    +|.+ |.+|+||||+|+..|+   .++|++
T Consensus       202 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~-D~~G~TpLh~A~~~g~---~~iv~~  277 (301)
T d1sw6a_         202 DILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQ-DSNGDTCLNIAARLGN---ISIVDA  277 (301)
T ss_dssp             HHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCC-CTTSCCHHHHHHHHCC---HHHHHH
T ss_pred             HHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCC-CCCCCCHHHHHHHcCC---HHHHHH
Confidence              334444444111                                    5777 8999999999999999   999999


Q ss_pred             HHhCCCCCcccCCCCCCccchhh
Q 006236          120 LLSASADVNCVDVYGNKPVDLIP  142 (655)
Q Consensus       120 LL~~GADvn~~D~~G~TPLhlAa  142 (655)
                      ||++|||++.+|.+|.||||+|+
T Consensus       278 Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         278 LLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             HHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             HHHCCCCCCCCCCCCCCHHHHcC
Confidence            99999999999999999999996

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.76  E-value=1.5e-09  Score=77.94  Aligned_cols=33  Identities=36%  Similarity=0.661  Sum_probs=29.6

Q ss_pred             CcccccccccCC---CCCCCCC-CCCCCCCCCcccCc
Q 006236          281 PAQYRTRLCKDE---IGCARKV-CFFAHKPEELRPVY  313 (655)
Q Consensus       281 P~~ykt~~C~~~---~~C~~~~-C~faH~~~elr~~~  313 (655)
                      +..|||++|+.|   |.|++|. |.|||+++|||.++
T Consensus         4 ~~~yKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr~~n   40 (40)
T d1m9oa_           4 SSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQAN   40 (40)
T ss_dssp             SSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC
T ss_pred             CCccccccChhhhcCCcCCCCCCCCCCCCHHHhcCCC
Confidence            568999999988   8999885 99999999999863

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=7.7e-10  Score=77.59  Aligned_cols=31  Identities=39%  Similarity=0.689  Sum_probs=28.3

Q ss_pred             cccccccccCC---CCCCCCC-CCCCCCCCCcccC
Q 006236          282 AQYRTRLCKDE---IGCARKV-CFFAHKPEELRPV  312 (655)
Q Consensus       282 ~~ykt~~C~~~---~~C~~~~-C~faH~~~elr~~  312 (655)
                      ..|||++|+.|   |.|++|. |.|||+.+|||++
T Consensus         2 ~kyKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr~~   36 (36)
T d1rgoa1           2 TRYKTELCRPFEESGTCKYGEKCQFAHGFHELRSL   36 (36)
T ss_dssp             TTTTSSBCHHHHHHSCCTTGGGCSSBSSGGGCCCC
T ss_pred             CCcchhhCcchhcCCcCCCCCcCCCcCCHHHccCC
Confidence            47999999988   8999985 9999999999975

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=9e-09  Score=71.02  Aligned_cols=29  Identities=38%  Similarity=0.793  Sum_probs=26.2

Q ss_pred             cCCcccccccccCC---CCCCCCC-CCCCCCCCC
Q 006236          279 LHPAQYRTRLCKDE---IGCARKV-CFFAHKPEE  308 (655)
Q Consensus       279 ~HP~~ykt~~C~~~---~~C~~~~-C~faH~~~e  308 (655)
                      -|| +|||++|+.|   |.|++|. |.|||+++|
T Consensus         2 rhp-kyKT~lC~~f~~~g~C~yG~~C~FaHg~~E   34 (34)
T d1rgoa2           2 RHP-KYKTELCRTFHTIGFCPYGPRCHFIHNADE   34 (34)
T ss_dssp             CCT-TTTCSBCHHHHHHSCCTTGGGCSSBCCSCC
T ss_pred             CCC-CccchhccccCCCCcCCCCCcccCcCCCCC
Confidence            377 7999999999   9999985 999999987

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.36  E-value=4.5e-05  Score=54.07  Aligned_cols=32  Identities=31%  Similarity=0.682  Sum_probs=28.5

Q ss_pred             CCCCcCCCCCcc-CCCCCCCCcccccCCccccc
Q 006236          247 YPYTCVPCPEFR-KGACPKGDGCEYAHGVFESW  278 (655)
Q Consensus       247 y~Ys~~~CP~~r-kg~C~~Gd~C~yaH~~~E~~  278 (655)
                      -.|++.+|+.|. .|.|++|+.|.|||+..|+.
T Consensus         5 ~~yKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr   37 (40)
T d1m9oa_           5 SRYKTELCRTYSESGRCRYGAKCQFAHGLGELR   37 (40)
T ss_dssp             SCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGG
T ss_pred             CccccccChhhhcCCcCCCCCCCCCCCCHHHhc
Confidence            469999999986 48999999999999998875

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=1.6e-05  Score=55.24  Aligned_cols=31  Identities=35%  Similarity=0.831  Sum_probs=28.0

Q ss_pred             CCCcCCCCCcc-CCCCCCCCcccccCCccccc
Q 006236          248 PYTCVPCPEFR-KGACPKGDGCEYAHGVFESW  278 (655)
Q Consensus       248 ~Ys~~~CP~~r-kg~C~~Gd~C~yaH~~~E~~  278 (655)
                      +|++.+|+.|. .|.|++|+.|.|||+..|+.
T Consensus         3 kyKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr   34 (36)
T d1rgoa1           3 RYKTELCRPFEESGTCKYGEKCQFAHGFHELR   34 (36)
T ss_dssp             TTTSSBCHHHHHHSCCTTGGGCSSBSSGGGCC
T ss_pred             CcchhhCcchhcCCcCCCCCcCCCcCCHHHcc
Confidence            59999999885 58999999999999999875

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=7e-05  Score=51.14  Aligned_cols=29  Identities=34%  Similarity=0.791  Sum_probs=26.0

Q ss_pred             CCCcCCCCCccC-CCCCCCCcccccCCccc
Q 006236          248 PYTCVPCPEFRK-GACPKGDGCEYAHGVFE  276 (655)
Q Consensus       248 ~Ys~~~CP~~rk-g~C~~Gd~C~yaH~~~E  276 (655)
                      +|++.+|..|.. |.|++|+.|.|+|+..|
T Consensus         5 kyKT~lC~~f~~~g~C~yG~~C~FaHg~~E   34 (34)
T d1rgoa2           5 KYKTELCRTFHTIGFCPYGPRCHFIHNADE   34 (34)
T ss_dssp             TTTCSBCHHHHHHSCCTTGGGCSSBCCSCC
T ss_pred             CccchhccccCCCCcCCCCCcccCcCCCCC
Confidence            499999999965 89999999999999765

>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.11  E-value=0.025  Score=35.97  Aligned_cols=22  Identities=36%  Similarity=0.566  Sum_probs=15.4

Q ss_pred             ccccccCC--CCCCCCC-CCCCCCC
Q 006236          285 RTRLCKDE--IGCARKV-CFFAHKP  306 (655)
Q Consensus       285 kt~~C~~~--~~C~~~~-C~faH~~  306 (655)
                      |..+|++|  |.|.++. |.|-|++
T Consensus         5 kkelCKfYvqGyCtrgenC~ymH~e   29 (29)
T d2cqea2           5 KRELCKFYITGFCARAENCPYMHGD   29 (29)
T ss_dssp             CCSBCTTTTTTCCSCSTTCSSBSSS
T ss_pred             hhhhhhhheeeeecCCcCcccccCC
Confidence            55677777  7777774 7777763