Citrus Sinensis ID: 006250

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650----
MADRDQAILKDLARNIQLADTITKIANEAQSFKQDCQELQAKTEKLAVLLRQVARVSSVSYQRPTRRIVDDTEQVLDKAMQLVVKCRANGILKRVFTIIPAAAFRKTLMQLENSLGDVSWLIRVSASSEENDDEYLGLPPIAANEPILCLIWEQIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDAESVEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRATETRIIGPLVNLLDEREPEVIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTLLCYIAIKQPESKTLAQEEVLIVLEWSFKQAHLVAEPSIEALLPEAKSTLATYQSRDRPFH
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHEEccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHccccHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHccccHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccHHHHccccccccHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcHHHHHcccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHcccccccccHHHHHHHHHcccHHHHHHHHcccccccHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccc
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEccHHHHHHHHHHHHHHHHHHHHHEEEcccccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHccHcHHHHHHHHHHcccccccHHHHHcccccHHHHHcccccccccccHHHHHHHcHHHHHcccccccccccccHHHHHcHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHccccHHHHHHHHHHHHHHccccccccHHHHHHHHHccccHHHHHHEEcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccHcccHHHHHHHHHHHHHHHHHHHcccccc
MADRDQAILKDLARNIQLADTITKIANEAQSFKQDCQELQAKTEKLAVLLRQVARVssvsyqrptrrivdDTEQVLDKAMQLVVKCRANGILKRVFTIIPAAAFRKTLMQLENSLGDVSWLIRVSasseenddeylglppiaanepILCLIWEQIAILHTGSMEEKCDAAASLVSLARDndrygkliieeggvppllklayegelegQENAARAIGLLGRDAESVEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELasnhpkcqdhfaQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSALVasnsqnpkdhrtappqqqgngniskvscpmpnqanssisnvVTNTIAiktraptnaqqaqpdshmyamqpnhhnqhqdqqvlggtstkgresedpTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKnsdlrrsafkpTSTAAKAVLEQLLHIVEKadsdllipSIRAIGNLARTFratetriigplvnllderepEVIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTLLCYIAIkqpesktlaQEEVLIVLEWSFKQAHLVAEPSIEALLPEAKSTLatyqsrdrpfh
MADRDQAILKDLARNIQLADTITKIANEAQSFKQDCQELQAKTEKLAVLLRQVarvssvsyqrptrrivddteqVLDKAMQLVVKCRANGILKRVFTIIPAAAFRKTLMQLENSLGDVSWLIRVSASSEENDDEYLGLPPIAANEPILCLIWEQIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDAESVEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEkadsdllipSIRAIGNLArtfratetriigplvnllderepEVIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTLLCYIAIKQPESKTLAQEEVLIVLEWSFKQAHLVAEPSIEALLPEAKStlatyqsrdrpfh
MADRDQAILKDLARNIQLADTITKIANEAQSFKQDCQELQAKTEKLAVLLRQVARVSSVSYQRPTRRIVDDTEQVLDKAMQLVVKCRANGILKRVFTIIPAAAFRKTLMQLENSLGDVSWLIRVSASSEENDDEYLGLPPIAANEPILCLIWEQIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDAESVEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMqpnhhnqhqdqqVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRATETRIIGPLVNLLDEREPEVIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTLLCYIAIKQPESKTLAQEEVLIVLEWSFKQAHLVAEPSIEALLPEAKSTLATYQSRDRPFH
********LKDLARNIQLADTITKIANEAQSFKQDCQELQAKTEKLAVLLRQVARVSSVSYQRPTRRIVDDTEQVLDKAMQLVVKCRANGILKRVFTIIPAAAFRKTLMQLENSLGDVSWLIRVSA******DEYLGLPPIAANEPILCLIWEQIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDAESVEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIA********************************************************************************************************************MAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVA****************AAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRATETRIIGPLVNLLDEREPEVIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTLLCYIAIKQPESKTLAQEEVLIVLEWSFKQAHLVAEPSIEAL*******************
*****QA**KDLARNIQLADTITKIAN***************T*KLAVL**********SYQRPTRRIVDDTEQVLD*************ILKRVFTIIPAAAFRKTLMQLENSLGDVSWLIRVSASSEENDDEYLGLPPIAANEPILCLIWEQIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDAESVEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSALVA**S******RTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQVLGGTST***********AQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRATETRIIGPLVNLLDEREPEVIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTLLCYIAIKQPESKTLAQEEVLIVLEWSFKQA**VAEPSIEALLPEAKSTLAT*********
MADRDQAILKDLARNIQLADTITKIANEAQSFKQDCQELQAKTEKLAVLLRQVARVSSVSYQRPTRRIVDDTEQVLDKAMQLVVKCRANGILKRVFTIIPAAAFRKTLMQLENSLGDVSWLIRVSASSEENDDEYLGLPPIAANEPILCLIWEQIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDAESVEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSALV******************GNGNISKVSCPMPNQANSSISNVVTNTIAIKTRA*********DSHMYAMQPN********************************MAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRATETRIIGPLVNLLDEREPEVIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTLLCYIAIKQPESKTLAQEEVLIVLEWSFKQAHLVAEPSIEALLPEAKSTLATYQSRDRPFH
*ADRDQAILKDLARNIQLADTITKIANEAQSFKQDCQELQAKTEKLAVLLRQVARVSSVSYQRPTRRIVDDTEQVLDKAMQLVVKCRANGILKRVFTIIPAAAFRKTLMQLENSLGDVSWLIRVSASSEENDDEYLGLPPIAANEPILCLIWEQIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDAESVEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQ**QPDSHMYAM*PNHHNQH*********STKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRATETRIIGPLVNLLDEREPEVIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTLLCYIAIKQPESKTLAQEEVLIVLEWSFKQAHLVAEPSIEALLPEAKSTLATYQSRD****
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MADRDQAILKDLARNIQLADTxxxxxxxxxxxxxxxxxxxxxTEKLAVLLRQVARVSSVSYQRPTRRIVDDTEQVLDKAMQLVVKCRANGILKRVFTIIPAAAFRKTLMQLENSLGDVSWLIRVSASSEENDDEYLGLPPIAANEPILCLIWEQIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDAESVEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRATETRIIGPLVNLLDEREPEVIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTLLCYIAIKQPESKTLAQEEVLIVLEWSFKQAHLVAEPSIEALLPEAKSTLATYQSRDRPFH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query654 2.2.26 [Sep-21-2011]
Q6BTZ4 560 Vacuolar protein 8 OS=Deb yes no 0.233 0.273 0.264 3e-06
Q59MN0 585 Vacuolar protein 8 OS=Can N/A no 0.203 0.227 0.266 7e-06
P52292529 Importin subunit alpha-2 yes no 0.235 0.291 0.289 2e-05
P52293529 Importin subunit alpha-2 yes no 0.237 0.293 0.266 2e-05
Q5EFZ4 556 Vacuolar protein 8 OS=Kom yes no 0.292 0.343 0.241 0.0002
>sp|Q6BTZ4|VAC8_DEBHA Vacuolar protein 8 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=VAC8 PE=3 SV=4 Back     alignment and function desciption
 Score = 54.3 bits (129), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 80/174 (45%), Gaps = 21/174 (12%)

Query: 433 LTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQ 492
           + +S AL+  A L +     V+  +  AL+ +T   E   +L  +   P           
Sbjct: 165 IAKSGALIPLAKLAKSKDIRVQRNATGALLNMTHSGENRQELVNAGAVPV---------- 214

Query: 493 LLHIVEKADSDLLIPSIRAIGNLA------RTFRATETRIIGPLVNLLDEREPEVIMEAT 546
           L+ ++   D+D+      A+ N+A      +    TE +++  LVNL+D   P V  +AT
Sbjct: 215 LVSLLSNEDADVQYYCTTALSNIAVDEMNRKKLSTTEPKLVSQLVNLMDSPSPRVQCQAT 274

Query: 547 VALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTLLCYIAI 600
           +AL   A+   Y  E     I+ AGG+ HL+QL+    Q + + A+  +  I+I
Sbjct: 275 LALRNLASDSGYQVE-----IVRAGGLPHLVQLLTCNHQPLVLAAVACIRNISI 323
Functions in both vacuole inheritance and protein targeting from the cytoplasm to vacuole.
Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592)
>sp|Q59MN0|VAC8_CANAL Vacuolar protein 8 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=VAC8 PE=3 SV=3 Back     alignment and function description
>sp|P52292|IMA2_HUMAN Importin subunit alpha-2 OS=Homo sapiens GN=KPNA2 PE=1 SV=1 Back     alignment and function description
>sp|P52293|IMA2_MOUSE Importin subunit alpha-2 OS=Mus musculus GN=Kpna2 PE=1 SV=2 Back     alignment and function description
>sp|Q5EFZ4|VAC8_PICPA Vacuolar protein 8 OS=Komagataella pastoris GN=VAC8 PE=3 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query654
255574758656 conserved hypothetical protein [Ricinus 0.980 0.977 0.715 0.0
224105201624 predicted protein [Populus trichocarpa] 0.951 0.996 0.699 0.0
207693265659 ARM repeat containing protein [Populus t 0.977 0.969 0.683 0.0
224078188626 predicted protein [Populus trichocarpa] 0.954 0.996 0.699 0.0
15236222664 armadillo repeat only 1 protein [Arabido 0.977 0.962 0.687 0.0
449458586645 PREDICTED: uncharacterized protein LOC10 0.970 0.984 0.711 0.0
356517858640 PREDICTED: uncharacterized protein LOC10 0.970 0.992 0.681 0.0
356509529634 PREDICTED: uncharacterized protein LOC10 0.961 0.992 0.671 0.0
297802464664 armadillo/beta-catenin repeat family pro 0.977 0.962 0.689 0.0
225427971659 PREDICTED: uncharacterized protein LOC10 0.970 0.963 0.684 0.0
>gi|255574758|ref|XP_002528287.1| conserved hypothetical protein [Ricinus communis] gi|223532324|gb|EEF34125.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  943 bits (2437), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 479/669 (71%), Positives = 546/669 (81%), Gaps = 28/669 (4%)

Query: 1   MADRDQAILKD-LARNIQLADTITKIANEAQSFKQDCQELQAKTEKLAVLLRQVARVSSV 59
           MAD    I+K+ LAR IQLAD +TK A+EAQSFKQDC EL+AKTEKLA LLRQ AR S+ 
Sbjct: 1   MAD----IVKEILARPIQLADQVTKSADEAQSFKQDCLELKAKTEKLATLLRQAARASND 56

Query: 60  SYQRPTRRIVDDTEQVLDKAMQLVVKCRANGILKRVFTIIPAAAFRKTLMQLENSLGDVS 119
            Y+RPTRRI+DDTEQVLDKA+ LV+KCRA GI+KR+FTIIP+ AFRKT MQLENS+GDVS
Sbjct: 57  LYERPTRRIIDDTEQVLDKALALVIKCRATGIMKRMFTIIPSGAFRKTSMQLENSIGDVS 116

Query: 120 WLIRVSASSEENDDEYLGLPPIAANEPILCLIWEQIAILHTGSMEEKCDAAASLVSLARD 179
           WL+RVSAS+ + DDEYLGLPPIAANEPILCLIWEQ+AIL TGS+EE+ DAAASLVSLARD
Sbjct: 117 WLLRVSASAGDRDDEYLGLPPIAANEPILCLIWEQVAILFTGSLEERSDAAASLVSLARD 176

Query: 180 NDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDAESVEQIVNAGVCSTFAK 239
           NDRYGKLIIEEGGVPPLLKLA EG++EGQENAARAIGLLGRD ESVEQIVNAGVCS FAK
Sbjct: 177 NDRYGKLIIEEGGVPPLLKLAKEGKMEGQENAARAIGLLGRDPESVEQIVNAGVCSVFAK 236

Query: 240 NLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASK 299
            LK+GHMKVQ VVAWAVSELA+NHPKCQDHFAQNNI+RFLVSHLAFETVQEHSKY IASK
Sbjct: 237 ILKEGHMKVQLVVAWAVSELAANHPKCQDHFAQNNIIRFLVSHLAFETVQEHSKYTIASK 296

Query: 300 QNISSLHSALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIK 359
           Q + S+HS L+ASN  N K         +     SK+S PM N   S + NV+TNT+A+K
Sbjct: 297 QTM-SIHSVLMASNDSNEKG--------EHEDEKSKISHPMNNSTPSQMHNVITNTLAMK 347

Query: 360 TRAP---TNAQQAQ-PDSHMYAM-------QPNHHNQ--HQDQQVLGGTSTKGRESEDPT 406
            + P   T   Q+Q P  +M  +       Q N   Q  H    VL GTS KGRE EDP 
Sbjct: 348 NQNPNTITKPNQSQSPTKNMPPLANQVKGNQNNARQQKGHPQHHVLTGTSIKGREFEDPG 407

Query: 407 VKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITA 466
            KAQMKAMAARALW+L  GN++ICR++TESRALLCFAVLLEKGP+DV+ +SAMALMEITA
Sbjct: 408 TKAQMKAMAARALWQLCIGNVTICRSITESRALLCFAVLLEKGPDDVQSYSAMALMEITA 467

Query: 467 VAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRATETRI 526
           VAE+ SDLRRSAFKPTS AAKAV++Q+L ++EKADS LL P ++AIGNLARTFRATETRI
Sbjct: 468 VAEQTSDLRRSAFKPTSPAAKAVVDQMLKVIEKADSVLLTPCVKAIGNLARTFRATETRI 527

Query: 527 IGPLVNLLDEREPEVIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQM 586
           IGPLV LLDEREPE+ MEA +ALNKFA  EN+L   HSKAII+AGG KHLIQLVYFGEQM
Sbjct: 528 IGPLVKLLDEREPEITMEAAIALNKFAAAENFLCVNHSKAIISAGGAKHLIQLVYFGEQM 587

Query: 587 IQIPALTLLCYIAIKQPESKTLAQEEVLIVLEWSFKQAHLVAEPSIEALLPEAKSTLATY 646
           +QIP+L LLCYI++  P+S+ LA EEVLIVLEWS KQAHL  EP+IE+LL +AKS L  Y
Sbjct: 588 VQIPSLILLCYISLNCPDSEVLANEEVLIVLEWSSKQAHLTHEPTIESLLQDAKSRLELY 647

Query: 647 QSR-DRPFH 654
           QSR  R FH
Sbjct: 648 QSRGSRGFH 656

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224105201|ref|XP_002313724.1| predicted protein [Populus trichocarpa] gi|222850132|gb|EEE87679.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|207693265|gb|ACI25287.1| ARM repeat containing protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224078188|ref|XP_002305501.1| predicted protein [Populus trichocarpa] gi|222848465|gb|EEE86012.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|15236222|ref|NP_195220.1| armadillo repeat only 1 protein [Arabidopsis thaliana] gi|5123711|emb|CAB45455.1| putative protein [Arabidopsis thaliana] gi|7270445|emb|CAB80211.1| putative protein [Arabidopsis thaliana] gi|332661039|gb|AEE86439.1| armadillo repeat only 1 protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449458586|ref|XP_004147028.1| PREDICTED: uncharacterized protein LOC101216019 [Cucumis sativus] gi|449517507|ref|XP_004165787.1| PREDICTED: uncharacterized LOC101216019 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356517858|ref|XP_003527603.1| PREDICTED: uncharacterized protein LOC100807066 [Glycine max] Back     alignment and taxonomy information
>gi|356509529|ref|XP_003523500.1| PREDICTED: uncharacterized protein LOC100794618 [Glycine max] Back     alignment and taxonomy information
>gi|297802464|ref|XP_002869116.1| armadillo/beta-catenin repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297314952|gb|EFH45375.1| armadillo/beta-catenin repeat family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|225427971|ref|XP_002277610.1| PREDICTED: uncharacterized protein LOC100264182 [Vitis vinifera] gi|147773136|emb|CAN60484.1| hypothetical protein VITISV_000072 [Vitis vinifera] gi|215598258|tpg|DAA06350.1| TPA_inf: ARO1-like protein 1 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query654
TAIR|locus:2116850664 ARO1 "AT4G34940" [Arabidopsis 0.983 0.968 0.681 7.8e-229
TAIR|locus:2156932651 ARO2 "armadillo repeat only 2" 0.974 0.978 0.634 1e-203
TAIR|locus:2135149670 ARO3 "armadillo repeat only 3" 0.983 0.959 0.579 3.3e-189
TAIR|locus:2088832615 ARO4 "AT3G26600" [Arabidopsis 0.478 0.508 0.391 9.7e-99
UNIPROTKB|F1M4P1522 F1M4P1 "Importin subunit alpha 0.233 0.293 0.260 1.4e-07
UNIPROTKB|C1JZ66522 KPNA7 "Importin subunit alpha- 0.152 0.191 0.275 8.5e-07
CGD|CAL0001835 585 VAC8 [Candida albicans (taxid: 0.307 0.343 0.256 3.5e-06
UNIPROTKB|Q59MN0 585 VAC8 "Vacuolar protein 8" [Can 0.307 0.343 0.256 3.5e-06
UNIPROTKB|P52292529 KPNA2 "Importin subunit alpha- 0.235 0.291 0.289 3.8e-06
UNIPROTKB|F1M3X9465 F1M3X9 "Importin subunit alpha 0.232 0.326 0.263 5.8e-06
TAIR|locus:2116850 ARO1 "AT4G34940" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2208 (782.3 bits), Expect = 7.8e-229, P = 7.8e-229
 Identities = 453/665 (68%), Positives = 530/665 (79%)

Query:     8 ILKD-LARNIQLADTITKIANEAQSFKQDCQELQAKTEKLAVLLRQVARVSSVSYQRPTR 66
             I+K  L R IQLAD ITK ++EA SF+Q+C E++AKTEKLA LLRQ AR S+  Y+RPTR
Sbjct:     4 IVKQILVRPIQLADQITKASDEAYSFRQECLEVKAKTEKLAGLLRQAARASNDLYERPTR 63

Query:    67 RIVDDTEQVLDKAMQLVVKCRANGILKRVFTIIPAAAFRKTLMQLENSLGDVSWLIRVSA 126
             RI+DDTEQVL KA+ LV KCRA G++KRVFTIIPAAAFRK  MQLENS+GDVSWL+RVSA
Sbjct:    64 RIIDDTEQVLFKALALVEKCRATGLMKRVFTIIPAAAFRKITMQLENSIGDVSWLLRVSA 123

Query:   127 SSEENDDEYLGLPPIAANEPILCLIWEQIAILHTGSMEEKCDAAASLVSLARDNDRYGKL 186
             S ++ DDEYLGLPPIAANEPILCLIWEQ+AIL TGS++++ DAAASLVSLARDNDRYG+L
Sbjct:   124 SGDDRDDEYLGLPPIAANEPILCLIWEQVAILFTGSLDDRSDAAASLVSLARDNDRYGRL 183

Query:   187 IIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDAESVEQIVNAGVCSTFAKNLKDGHM 246
             IIEEGGVP LLKLA EG++EGQENAARAIGLLGRD ESVEQIVNAGVC  FAK LK+GHM
Sbjct:   184 IIEEGGVPSLLKLAKEGKMEGQENAARAIGLLGRDPESVEQIVNAGVCQVFAKILKEGHM 243

Query:   247 KVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIAS-KQNISSL 305
             KVQ+VVAWAVSELASNHPKCQDHFAQNNI+RFLVSHLAFETVQEHSKYAI S KQ +SS+
Sbjct:   244 KVQTVVAWAVSELASNHPKCQDHFAQNNIIRFLVSHLAFETVQEHSKYAIVSNKQTLSSI 303

Query:   306 HSALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAP-- 363
             H+ ++ASN+ NP D +    Q +   NIS    P+ NQ  S + +++ NT+A+K   P  
Sbjct:   304 HTVVMASNT-NPADKKENNEQDETKSNISH---PLSNQTPSQMHSLIANTLAMKGSGPSS 359

Query:   364 ---------TNAQQAQPDSHMYAMXXXXXXXXX----XXXVLGGTSTKGRESEDPTVKAQ 410
                      TN  Q +  +  +                   L GTS KGRE EDP  KAQ
Sbjct:   360 GSGSGSGSGTNKNQIKQSNQQHQNHTKGGSNPRGNNPTHVSLMGTSIKGREYEDPATKAQ 419

Query:   411 MKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAVAEK 470
             MKAMAARALW+LS+GNL ICR++TESRALLCFAVLLEKG ++VK +SA+A+MEIT VAE+
Sbjct:   420 MKAMAARALWQLSRGNLQICRSITESRALLCFAVLLEKGDDEVKSYSALAMMEITDVAEQ 479

Query:   471 NSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRATETRIIGPL 530
               +LRRSAFKPTS AAKAV+EQLL ++E    DLLIP I++IG+L+RTFRATETRIIGPL
Sbjct:   480 YPELRRSAFKPTSPAAKAVVEQLLKVIENEILDLLIPCIKSIGSLSRTFRATETRIIGPL 539

Query:   531 VNLLDEREPEVIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQMIQIP 590
             V LLDERE E+ MEA VAL KF+ TEN+L + HSKAII AGG KHLIQLVYFGEQM+Q+P
Sbjct:   540 VKLLDEREAEIAMEAAVALIKFSCTENFLRDNHSKAIIAAGGAKHLIQLVYFGEQMVQVP 599

Query:   591 ALTLLCYIAIKQPESKTLAQEEVLIVLEWSFKQAHLVAEPSIEALLPEAKSTLATYQSR- 649
             AL LLCYIA+  P+S+TLAQEEVL+VLEWS KQAHLV  P+I+ +LPEAKS L  YQSR 
Sbjct:   600 ALMLLCYIALNVPDSETLAQEEVLVVLEWSTKQAHLVEAPTIDEILPEAKSRLELYQSRG 659

Query:   650 DRPFH 654
              R FH
Sbjct:   660 SRGFH 664
GO:0005634 "nucleus" evidence=IDA
GO:0005737 "cytoplasm" evidence=IDA
GO:0009860 "pollen tube growth" evidence=RCA;IMP
GO:0030036 "actin cytoskeleton organization" evidence=RCA;IMP
GO:0090404 "pollen tube tip" evidence=IDA
GO:0009827 "plant-type cell wall modification" evidence=RCA
GO:0030048 "actin filament-based movement" evidence=RCA
TAIR|locus:2156932 ARO2 "armadillo repeat only 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2135149 ARO3 "armadillo repeat only 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088832 ARO4 "AT3G26600" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1M4P1 F1M4P1 "Importin subunit alpha" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|C1JZ66 KPNA7 "Importin subunit alpha-8" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
CGD|CAL0001835 VAC8 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q59MN0 VAC8 "Vacuolar protein 8" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
UNIPROTKB|P52292 KPNA2 "Importin subunit alpha-2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1M3X9 F1M3X9 "Importin subunit alpha" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query654
cd00020120 cd00020, ARM, Armadillo/beta-catenin-like repeats 1e-09
cd00020120 cd00020, ARM, Armadillo/beta-catenin-like repeats 6e-09
cd00020120 cd00020, ARM, Armadillo/beta-catenin-like repeats 4e-06
cd00020120 cd00020, ARM, Armadillo/beta-catenin-like repeats 2e-04
PLN03200 2102 PLN03200, PLN03200, cellulose synthase-interactive 8e-04
pfam0051441 pfam00514, Arm, Armadillo/beta-catenin-like repeat 0.003
pfam0051441 pfam00514, Arm, Armadillo/beta-catenin-like repeat 0.004
>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats Back     alignment and domain information 
 Score = 56.2 bits (136), Expect = 1e-09
 Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 1/97 (1%)

Query: 166 KCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARAIGLLGRDAESV 225
           + +AA +L +L+  N+   + ++E GG+P L++L    + E  + A  A+  L    E  
Sbjct: 24  QREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDN 83

Query: 226 EQIV-NAGVCSTFAKNLKDGHMKVQSVVAWAVSELAS 261
           + IV  AG        L   +  +Q     A+S LAS
Sbjct: 84  KLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120
>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats Back     alignment and domain information
>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats Back     alignment and domain information
>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats Back     alignment and domain information
>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat Back     alignment and domain information
>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 654
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 100.0
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 100.0
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 100.0
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 100.0
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 99.97
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 99.97
KOG4224550 consensus Armadillo repeat protein VAC8 required f 99.94
KOG4224550 consensus Armadillo repeat protein VAC8 required f 99.94
PF05804708 KAP: Kinesin-associated protein (KAP) 99.83
PF05804708 KAP: Kinesin-associated protein (KAP) 99.75
KOG1048717 consensus Neural adherens junction protein Plakoph 99.61
PRK09687280 putative lyase; Provisional 99.59
KOG1048717 consensus Neural adherens junction protein Plakoph 99.53
PRK09687280 putative lyase; Provisional 99.46
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 99.42
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 99.32
KOG4199461 consensus Uncharacterized conserved protein [Funct 99.31
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 99.31
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 99.28
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 99.26
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 99.24
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 99.24
KOG4500 604 consensus Rho/Rac GTPase guanine nucleotide exchan 99.23
KOG4500604 consensus Rho/Rac GTPase guanine nucleotide exchan 99.2
KOG4199461 consensus Uncharacterized conserved protein [Funct 99.15
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 99.02
KOG2122 2195 consensus Beta-catenin-binding protein APC, contai 98.97
KOG2122 2195 consensus Beta-catenin-binding protein APC, contai 98.94
KOG0168 1051 consensus Putative ubiquitin fusion degradation pr 98.78
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 98.65
KOG1222791 consensus Kinesin associated protein KAP [Intracel 98.6
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 98.57
PF01602 526 Adaptin_N: Adaptin N terminal region; InterPro: IP 98.56
KOG3678 832 consensus SARM protein (with sterile alpha and arm 98.55
KOG4646173 consensus Uncharacterized conserved protein, conta 98.54
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 98.53
PF0051441 Arm: Armadillo/beta-catenin-like repeat; InterPro: 98.49
cd00256429 VATPase_H VATPase_H, regulatory vacuolar ATP synth 98.43
PTZ00429 746 beta-adaptin; Provisional 98.37
PF0051441 Arm: Armadillo/beta-catenin-like repeat; InterPro: 98.3
KOG1293 678 consensus Proteins containing armadillo/beta-caten 98.3
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 98.29
cd00256429 VATPase_H VATPase_H, regulatory vacuolar ATP synth 98.24
TIGR02270410 conserved hypothetical protein. Members are found 98.22
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 98.16
PF03224312 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 98.08
COG1413335 FOG: HEAT repeat [Energy production and conversion 98.07
KOG1222791 consensus Kinesin associated protein KAP [Intracel 98.06
TIGR02270410 conserved hypothetical protein. Members are found 97.97
KOG2023 885 consensus Nuclear transport receptor Karyopherin-b 97.96
PTZ00429 746 beta-adaptin; Provisional 97.96
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 97.95
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 97.94
smart0018541 ARM Armadillo/beta-catenin-like repeats. Approx. 4 97.81
KOG0946 970 consensus ER-Golgi vesicle-tethering protein p115 97.81
PF03224312 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 97.8
KOG0168 1051 consensus Putative ubiquitin fusion degradation pr 97.71
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 97.68
KOG1062 866 consensus Vesicle coat complex AP-1, gamma subunit 97.64
smart0018541 ARM Armadillo/beta-catenin-like repeats. Approx. 4 97.63
KOG0946 970 consensus ER-Golgi vesicle-tethering protein p115 97.6
KOG1062 866 consensus Vesicle coat complex AP-1, gamma subunit 97.55
COG1413335 FOG: HEAT repeat [Energy production and conversion 97.54
KOG2759442 consensus Vacuolar H+-ATPase V1 sector, subunit H 97.54
KOG3678 832 consensus SARM protein (with sterile alpha and arm 97.44
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 97.34
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 97.27
KOG1293678 consensus Proteins containing armadillo/beta-caten 97.26
KOG2759442 consensus Vacuolar H+-ATPase V1 sector, subunit H 97.07
PF05536543 Neurochondrin: Neurochondrin 96.95
KOG2973353 consensus Uncharacterized conserved protein [Funct 96.8
KOG4646173 consensus Uncharacterized conserved protein, conta 96.73
KOG1059 877 consensus Vesicle coat complex AP-3, delta subunit 96.71
KOG1517 1387 consensus Guanine nucleotide binding protein MIP1 96.66
PF09759102 Atx10homo_assoc: Spinocerebellar ataxia type 10 pr 96.65
KOG1060 968 consensus Vesicle coat complex AP-3, beta subunit 96.61
PF09759102 Atx10homo_assoc: Spinocerebellar ataxia type 10 pr 96.6
COG5096 757 Vesicle coat complex, various subunits [Intracellu 96.6
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 96.59
KOG4535728 consensus HEAT and armadillo repeat-containing pro 96.56
KOG1061 734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 96.55
KOG17892235 consensus Endocytosis protein RME-8, contains DnaJ 96.44
KOG17892235 consensus Endocytosis protein RME-8, contains DnaJ 96.28
KOG0567289 consensus HEAT repeat-containing protein [General 96.26
KOG1242569 consensus Protein containing adaptin N-terminal re 95.99
KOG2259 823 consensus Uncharacterized conserved protein [Funct 95.88
KOG1241 859 consensus Karyopherin (importin) beta 1 [Nuclear s 95.76
KOG1059 877 consensus Vesicle coat complex AP-3, delta subunit 95.76
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 95.6
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 95.5
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 95.43
COG5240 898 SEC21 Vesicle coat complex COPI, gamma subunit [In 95.24
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 95.08
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 94.92
KOG1242569 consensus Protein containing adaptin N-terminal re 94.83
KOG2259 823 consensus Uncharacterized conserved protein [Funct 94.8
KOG1824 1233 consensus TATA-binding protein-interacting protein 94.76
PF05536543 Neurochondrin: Neurochondrin 94.66
KOG0567289 consensus HEAT repeat-containing protein [General 94.63
KOG1517 1387 consensus Guanine nucleotide binding protein MIP1 94.39
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 94.38
KOG4413524 consensus 26S proteasome regulatory complex, subun 94.3
KOG1077 938 consensus Vesicle coat complex AP-2, alpha subunit 93.93
KOG0213 1172 consensus Splicing factor 3b, subunit 1 [RNA proce 93.88
KOG1061 734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 93.69
PF1466873 RICTOR_V: Rapamycin-insensitive companion of mTOR, 93.62
PF14664371 RICTOR_N: Rapamycin-insensitive companion of mTOR, 93.53
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 93.23
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 92.99
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 92.86
COG5369743 Uncharacterized conserved protein [Function unknow 92.43
PF08045257 CDC14: Cell division control protein 14, SIN compo 92.33
PF10165446 Ric8: Guanine nucleotide exchange factor synembryn 92.31
PF11698119 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 92.27
PF06025379 DUF913: Domain of Unknown Function (DUF913); Inter 92.13
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 91.79
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 91.62
KOG1824 1233 consensus TATA-binding protein-interacting protein 91.43
PF14664371 RICTOR_N: Rapamycin-insensitive companion of mTOR, 91.29
KOG1060 968 consensus Vesicle coat complex AP-3, beta subunit 91.14
PF11698119 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 91.13
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 91.09
PF06025379 DUF913: Domain of Unknown Function (DUF913); Inter 91.04
COG5369743 Uncharacterized conserved protein [Function unknow 90.57
PF10165446 Ric8: Guanine nucleotide exchange factor synembryn 90.13
PF04063192 DUF383: Domain of unknown function (DUF383); Inter 89.86
PF06371187 Drf_GBD: Diaphanous GTPase-binding Domain; InterPr 89.79
PF05004309 IFRD: Interferon-related developmental regulator ( 89.69
COG5096 757 Vesicle coat complex, various subunits [Intracellu 89.55
PF11841160 DUF3361: Domain of unknown function (DUF3361) 89.33
PF11701157 UNC45-central: Myosin-binding striated muscle asse 89.29
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 88.65
PF08045257 CDC14: Cell division control protein 14, SIN compo 87.83
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 87.67
COG5116 926 RPN2 26S proteasome regulatory complex component [ 87.57
KOG0212675 consensus Uncharacterized conserved protein [Funct 86.88
KOG2611 698 consensus Neurochondrin/leucine-rich protein (Neur 86.26
COG5240 898 SEC21 Vesicle coat complex COPI, gamma subunit [In 84.59
PF05918 556 API5: Apoptosis inhibitory protein 5 (API5); Inter 84.58
PF05659147 RPW8: Arabidopsis broad-spectrum mildew resistance 84.47
KOG2973353 consensus Uncharacterized conserved protein [Funct 84.42
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 84.06
KOG2734536 consensus Uncharacterized conserved protein [Funct 83.85
KOG4413524 consensus 26S proteasome regulatory complex, subun 83.57
COG5231432 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene 81.41
PF05004309 IFRD: Interferon-related developmental regulator ( 81.38
KOG2062 929 consensus 26S proteasome regulatory complex, subun 81.28
KOG2032533 consensus Uncharacterized conserved protein [Funct 80.62
KOG4151748 consensus Myosin assembly protein/sexual cycle pro 80.59
PF1466873 RICTOR_V: Rapamycin-insensitive companion of mTOR, 80.57
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information 
Probab=100.00  E-value=5.6e-50  Score=405.46  Aligned_cols=402  Identities=19%  Similarity=0.235  Sum_probs=323.0

Q ss_pred             cccccCCCHHHHHHHHHHHHHh-ccCCchhHHHHHhcCCHHHHHHhhcc-CCHHHHHHHHHHHHHhcCCc-chHHHHHHc
Q 006250          155 IAILHTGSMEEKCDAAASLVSL-ARDNDRYGKLIIEEGGVPPLLKLAYE-GELEGQENAARAIGLLGRDA-ESVEQIVNA  231 (654)
Q Consensus       155 V~lL~s~~~~~k~~Aa~aL~~L-a~~~~~~~~~I~e~G~Ip~LV~LL~s-~~~~~q~~Aa~AL~nLa~~~-e~~~~iv~~  231 (654)
                      .+-|.+.+.+.+.+|....+.+ +++.....+.++++|++|.+|+++++ .....|++|+|||.|++++. .+++.++++
T Consensus        77 t~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~  156 (526)
T COG5064          77 TQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDA  156 (526)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeC
Confidence            7788899999999999999986 56656679999999999999999954 45778999999999999985 667788999


Q ss_pred             CchHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhccchhhhHHHHh
Q 006250          232 GVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSALVA  311 (654)
Q Consensus       232 GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~~l~~~  311 (654)
                      |+||.|+++|.++..+|++++.|||+|+|++++.+|+.+.+.|++.||+.+|.+..  .|-+  +... .++.+.++|++
T Consensus       157 ~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~--~~is--mlRn-~TWtLSNlcRG  231 (526)
T COG5064         157 GAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSA--IHIS--MLRN-ATWTLSNLCRG  231 (526)
T ss_pred             CchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhcc--chHH--HHHH-hHHHHHHhhCC
Confidence            99999999999999999999999999999999999999999999999999997552  1211  1111 11455556666


Q ss_pred             hcCCCCC-CCCCCCCC--CCC---CCCc-----ccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCC
Q 006250          312 SNSQNPK-DHRTAPPQ--QQG---NGNI-----SKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQP  380 (654)
Q Consensus       312 ~~~~~~~-~~~~~~~~--~~~---~~~~-----~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~  380 (654)
                      .++.... ..+.++|.  .+.   |.+.     |++|| ++||+++.++.|++++...++                    
T Consensus       232 knP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSY-lsDg~~E~i~avld~g~~~RL--------------------  290 (526)
T COG5064         232 KNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISY-LSDGPNEKIQAVLDVGIPGRL--------------------  290 (526)
T ss_pred             CCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH-hccCcHHHHHHHHhcCCcHHH--------------------
Confidence            5442110 00111111  111   3222     79998 589999999999998765553                    


Q ss_pred             CCCCccchhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCChhHHHHHHHH
Q 006250          381 NHHNQHQDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMA  460 (654)
Q Consensus       381 ~~~~~~~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~A  460 (654)
                            +++++.          ++    .+++++|.|++||+.+|++.+++.|++.|+|+.|..||.++++.+|+++||+
T Consensus       291 ------vElLs~----------~s----a~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWT  350 (526)
T COG5064         291 ------VELLSH----------ES----AKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWT  350 (526)
T ss_pred             ------HHHhcC----------cc----ccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhhee
Confidence                  333332          33    3578999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchhhhhccHHHHHHHhccCCHH
Q 006250          461 LMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRATETRIIGPLVNLLDEREPE  540 (654)
Q Consensus       461 L~~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~~e~~~I~pLV~lL~~~~~~  540 (654)
                      |+||++|..                     +|+..+++                         .+.|||||++|+..+..
T Consensus       351 iSNITAGnt---------------------eqiqavid-------------------------~nliPpLi~lls~ae~k  384 (526)
T COG5064         351 ISNITAGNT---------------------EQIQAVID-------------------------ANLIPPLIHLLSSAEYK  384 (526)
T ss_pred             ecccccCCH---------------------HHHHHHHh-------------------------cccchHHHHHHHHHHHH
Confidence            999998765                     33333443                         47999999999999999


Q ss_pred             HHHHHHHHHHhccccCCCCCHHHHHHHHHCCCHHHHHHhhccCCcchHHHHHHHHHHHHhCCCchHHHHhhhhh---HHH
Q 006250          541 VIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTLLCYIAIKQPESKTLAQEEVL---IVL  617 (654)
Q Consensus       541 v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~ia~~~~~~~~l~~~~~l---~~l  617 (654)
                      +++|||||++|..++++. .++..+++++.|.|+|||.||...+.++-..++.++.|+ +++|+..+...-.-+   .+.
T Consensus       385 ~kKEACWAisNatsgg~~-~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eni-Lk~Ge~d~~~~~~nin~ya~~  462 (526)
T COG5064         385 IKKEACWAISNATSGGLN-RPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENI-LKVGEQDRLRYGKNINIYAVY  462 (526)
T ss_pred             HHHHHHHHHHhhhccccC-CchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHH-HhhhhHHHHhccCCccHHHHH
Confidence            999999999999988864 689999999999999999999998886544489999999 889887665432222   222


Q ss_pred             Hh---hhhhhhhhcCccHHhHHHHHHHHHHhhhcCC
Q 006250          618 EW---SFKQAHLVAEPSIEALLPEAKSTLATYQSRD  650 (654)
Q Consensus       618 ~~---~~~~~~~~q~~~~~~l~~~a~~~l~~y~~~~  650 (654)
                      .+   |.+.++.+|+..+.++|.||++|+|.||...
T Consensus       463 vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fFgee  498 (526)
T COG5064         463 VEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFFGEE  498 (526)
T ss_pred             HHhcccHHHHHHhhhccccHHHHHHHHHHHHHcccc
Confidence            22   7788899999999999999999999999654

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG4199 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] Back     alignment and domain information
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] Back     alignment and domain information
>KOG4199 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] Back     alignment and domain information
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown] Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless Back     alignment and domain information
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless Back     alignment and domain information
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>smart00185 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>smart00185 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] Back     alignment and domain information
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information
>PF05536 Neurochondrin: Neurochondrin Back     alignment and domain information
>KOG2973 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown] Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>PF05536 Neurochondrin: Neurochondrin Back     alignment and domain information
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5 Back     alignment and domain information
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>COG5369 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1 Back     alignment and domain information
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] Back     alignment and domain information
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing Back     alignment and domain information
>COG5369 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] Back     alignment and domain information
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function Back     alignment and domain information
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division [] Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>PF11841 DUF3361: Domain of unknown function (DUF3361) Back     alignment and domain information
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1 Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots Back     alignment and domain information
>KOG2973 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>KOG2734 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2032 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query654
1ial_A453 Importin Alpha, Mouse Length = 453 2e-06
3tpm_A422 Crystal Structure Of Mal Rpel Domain In Complex Wit 2e-06
3btr_C427 Ar-Nls:importin-Alpha Complex Length = 427 2e-06
2c1m_A424 Nup50:importin-Alpha Complex Length = 424 2e-06
3ve6_A426 Crystal Structure Analysis Of Venezuelan Equine Enc 2e-06
3l3q_A427 Mouse Importin Alpha-Peptm Nls Peptide Complex Leng 2e-06
1y2a_C428 Structure Of Mammalian Importin Bound To The Non-Cl 2e-06
2ynr_A461 Mimp_alphadibb_b54nls Length = 461 3e-06
3fex_C467 Crystal Structure Of The Cbc-Importin Alpha Complex 3e-06
1ejl_I460 Mouse Importin Alpha-Sv40 Large T Antigen Nls Pepti 3e-06
3rz9_A510 Mouse Importin Alpha-Ku80 Nls Peptide Complex Lengt 3e-06
1q1s_C466 Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptid 3e-06
3tpo_A529 Crystal Structure Of D192aE396A MUTANT OF MOUSE IMP 3e-06
4htv_A509 Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex 3e-06
3ukw_B510 Mouse Importin Alpha: Bimax1 Peptide Complex Length 3e-06
4ba3_A496 Mimp_alphadibb_a89nls Length = 496 3e-06
4hxt_A252 Crystal Structure Of Engineered Protein. Northeast 2e-04
>pdb|1IAL|A Chain A, Importin Alpha, Mouse Length = 453 Back     alignment and structure 
Iteration: 1

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 79/165 (47%), Gaps = 10/165 (6%)
Query: 139 PPIAANEPILCLIWEQIAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLK 198
           PP+ A E IL  +   + +LH    E   D+  ++  L    +   ++++++G VP L+K
Sbjct: 201 PPLDAVEQILPTL---VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVK 257
Query: 199 LAYEGELEGQENAARAIG--LLGRDAESVEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAV 256
           L    EL     A RAIG  + G D E  +++++AG  + F   L +    +Q    W +
Sbjct: 258 LLGATELPIVTPALRAIGNIVTGTD-EQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTM 316
Query: 257 SELASNHPKCQDHFAQNNIVRFLVSHLA---FETVQEHSKYAIAS 298
           S + +           + +V FLV  L+   F+T Q+ + +AI +
Sbjct: 317 SNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKT-QKEAAWAITN 360
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With Importin-Alpha Length = 422 Back     alignment and structure
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex Length = 427 Back     alignment and structure
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex Length = 424 Back     alignment and structure
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine Encephalitis Virus Capsid Protein Nls And Importin Alpha Length = 426 Back     alignment and structure
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex Length = 427 Back     alignment and structure
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical Plscr1-Nls Length = 428 Back     alignment and structure
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls Length = 461 Back     alignment and structure
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex. Length = 467 Back     alignment and structure
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide Complex Length = 460 Back     alignment and structure
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex Length = 510 Back     alignment and structure
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide Complex Length = 466 Back     alignment and structure
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN ALPHA2 Length = 529 Back     alignment and structure
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex Length = 509 Back     alignment and structure
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex Length = 510 Back     alignment and structure
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls Length = 496 Back     alignment and structure
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query654
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 4e-26
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 5e-16
1jdh_A 529 Beta-catenin; beta-catenin, protein-protein comple 6e-13
1jdh_A 529 Beta-catenin; beta-catenin, protein-protein comple 7e-10
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 4e-09
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 3e-08
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 8e-08
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 7e-07
1jdh_A 529 Beta-catenin; beta-catenin, protein-protein comple 1e-06
1jdh_A 529 Beta-catenin; beta-catenin, protein-protein comple 4e-06
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 4e-24
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 9e-19
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 2e-15
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 2e-13
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 9e-13
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 2e-11
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 5e-10
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 8e-10
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 2e-07
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 1e-06
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 2e-06
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 9e-06
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 1e-20
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 2e-19
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 2e-14
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 1e-11
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 1e-11
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 7e-11
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 7e-09
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 2e-07
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 6e-07
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 1e-19
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 2e-16
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 1e-14
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 1e-19
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 8e-18
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 2e-15
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 3e-13
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 8e-13
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 7e-09
4db8_A 252 Armadillo-repeat protein; solenoid repeat, de novo 3e-07
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 2e-18
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 2e-17
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 4e-13
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 3e-12
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 5e-10
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 3e-08
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 9e-08
3oqs_A510 Importin subunit alpha-2; importin alpha, karyophe 1e-17
3oqs_A510 Importin subunit alpha-2; importin alpha, karyophe 1e-14
3oqs_A510 Importin subunit alpha-2; importin alpha, karyophe 5e-14
3oqs_A 510 Importin subunit alpha-2; importin alpha, karyophe 2e-13
3oqs_A510 Importin subunit alpha-2; importin alpha, karyophe 1e-11
3oqs_A510 Importin subunit alpha-2; importin alpha, karyophe 2e-11
3oqs_A510 Importin subunit alpha-2; importin alpha, karyophe 3e-11
3oqs_A510 Importin subunit alpha-2; importin alpha, karyophe 2e-10
3oqs_A510 Importin subunit alpha-2; importin alpha, karyophe 7e-07
3oqs_A 510 Importin subunit alpha-2; importin alpha, karyophe 7e-05
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 1e-15
1xm9_A 457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 1e-05
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 1e-14
3l6x_A 584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 2e-05
3l6x_A 584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 1e-04
1wa5_B 530 Importin alpha subunit; nuclear transport/complex, 2e-14
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 1e-12
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 1e-12
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 5e-11
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 2e-08
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 4e-12
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 5e-11
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 4e-08
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 2e-07
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 4e-05
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 3e-04
3nmz_A458 APC variant protein; protein-protein complex, arma 7e-11
3nmz_A458 APC variant protein; protein-protein complex, arma 1e-08
3nmz_A458 APC variant protein; protein-protein complex, arma 2e-08
3nmz_A458 APC variant protein; protein-protein complex, arma 4e-08
3nmz_A458 APC variant protein; protein-protein complex, arma 4e-08
3nmz_A458 APC variant protein; protein-protein complex, arma 4e-08
3nmz_A458 APC variant protein; protein-protein complex, arma 3e-05
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 6e-10
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 9e-10
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 2e-09
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 3e-09
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 2e-06
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 9e-06
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 2e-05
3nmw_A 354 APC variant protein; ARMADIILO repeats domain, cel 2e-04
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 6e-08
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 1e-06
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 1e-07
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 1e-06
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 2e-06
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 7e-06
3now_A 810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 4e-05
3now_A 810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 2e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 4e-04
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
 Score =  111 bits (280), Expect = 4e-26
 Identities = 61/468 (13%), Positives = 132/468 (28%), Gaps = 68/468 (14%)

Query: 155 IAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARA 214
           + +L +        A  +L +L    +     +   GG+  ++ L  +  ++        
Sbjct: 107 VKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDC 166

Query: 215 IGLL-GRDAESVEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQN 273
           + +L   + ES   I+ +G        ++    +        V ++ S     +    + 
Sbjct: 167 LQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEA 226

Query: 274 NIVRFLVSHLAFET--VQEHSKYAIASKQNISSLHSALVASNSQNPKDHRTAPPQQQGNG 331
             ++ L  HL   +  + ++  + +    N+S   +                        
Sbjct: 227 GGMQALGLHLTDPSQRLVQNCLWTLR---NLSDAATKQEG-------------------- 263

Query: 332 NISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQV 391
            +  +   +     S   NVVT    I                +  +  N++        
Sbjct: 264 -MEGLLGTLVQLLGSDDINVVTCAAGI----------------LSNLTCNNYKNKMMVCQ 306

Query: 392 LGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVL---LEK 448
           +GG     R       +  +   A  AL  L+  +          R      V+   L  
Sbjct: 307 VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHP 366

Query: 449 GPEDVKHFSAMALMEITAVAEKNS-------------DLRRSAFKPTSTAAKAVLEQLLH 495
                   + + L+   A+   N               L   A + T         Q   
Sbjct: 367 PSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQF 426

Query: 496 IVEKADSDLLIPSIRAIGNLART----FRATETRIIGPLVNLLDEREPEVIMEATVALNK 551
           +      +++     A+  LAR             I   V LL      +   A   L +
Sbjct: 427 VEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCE 486

Query: 552 FATTENYLSETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTLLCYIA 599
            A  +       ++AI   G    L +L++   + +   A  +L  ++
Sbjct: 487 LAQDKEA-----AEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 Back     alignment and structure
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 Back     alignment and structure
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 Back     alignment and structure
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 Back     alignment and structure
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 Back     alignment and structure
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 Back     alignment and structure
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 Back     alignment and structure
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 Back     alignment and structure
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 Back     alignment and structure
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Length = 591 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query654
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 100.0
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 100.0
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 100.0
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 100.0
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 100.0
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 100.0
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 100.0
3nmz_A458 APC variant protein; protein-protein complex, arma 100.0
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 100.0
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 100.0
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 100.0
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 100.0
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 100.0
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 100.0
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 100.0
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 100.0
3nmz_A458 APC variant protein; protein-protein complex, arma 100.0
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 100.0
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 99.98
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 99.98
1jdh_A 529 Beta-catenin; beta-catenin, protein-protein comple 99.97
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 99.97
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 99.97
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 99.97
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 99.97
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 99.96
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 99.95
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 99.95
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 99.95
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 99.93
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 99.92
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 99.91
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 99.91
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 99.91
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 99.9
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 99.88
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 99.88
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 99.87
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 99.58
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 99.58
3grl_A 651 General vesicular transport factor P115; vesicle t 99.48
3grl_A 651 General vesicular transport factor P115; vesicle t 99.48
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 99.38
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 99.38
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 99.37
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 99.36
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 99.35
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 99.34
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 99.33
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 99.26
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 99.25
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 99.23
1w63_A 618 Adapter-related protein complex 1 gamma 1 subunit; 99.18
4gmo_A 684 Putative uncharacterized protein; ARM, heat, solen 99.11
4gmo_A 684 Putative uncharacterized protein; ARM, heat, solen 99.05
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 98.97
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 98.96
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 98.91
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 98.86
1qgr_A 876 Protein (importin beta subunit); transport recepto 98.82
1qgr_A876 Protein (importin beta subunit); transport recepto 98.79
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 98.76
2vgl_A 621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 98.45
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 98.39
4ady_A 963 RPN2, 26S proteasome regulatory subunit RPN2; prot 98.36
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 98.27
4ady_A 963 RPN2, 26S proteasome regulatory subunit RPN2; prot 98.21
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 98.13
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 98.11
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 98.02
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 97.87
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 97.86
2db0_A253 253AA long hypothetical protein; heat repeats, hel 97.85
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 97.77
1ho8_A480 Vacuolar ATP synthase subunit H; heat repeat, hydr 97.6
2db0_A253 253AA long hypothetical protein; heat repeats, hel 97.51
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 97.35
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 97.27
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 97.26
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 97.11
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 96.9
1ho8_A480 Vacuolar ATP synthase subunit H; heat repeat, hydr 96.81
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 96.69
3dad_A339 FH1/FH2 domain-containing protein 1; formin, FHOD1 96.69
3dad_A339 FH1/FH2 domain-containing protein 1; formin, FHOD1 95.01
1lrv_A244 LRV, leucine-rich repeat variant; leucine-rich rep 94.4
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 93.28
2x1g_F971 Cadmus; transport protein, developmental protein, 92.54
2x19_B963 Importin-13; nuclear transport, protein transport; 92.27
2x1g_F971 Cadmus; transport protein, developmental protein, 91.67
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 91.14
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 90.9
1wa5_C 960 Importin alpha RE-exporter; nuclear transport/comp 88.95
3l9t_A240 Putative uncharacterized protein SMU.31; hypotheti 88.08
4hat_C1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 85.84
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 84.44
4hat_C 1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 83.88
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 81.56
2x19_B 963 Importin-13; nuclear transport, protein transport; 81.03
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
Probab=100.00  E-value=3.8e-43  Score=394.68  Aligned_cols=409  Identities=14%  Similarity=0.182  Sum_probs=316.6

Q ss_pred             HHHHcccccCCCHHHHHHHHHHHHHh-ccCCchhHHHHHhcCCHHHHHHhhccC-CHHHHHHHHHHHHHhcCC-cchHHH
Q 006250          151 IWEQIAILHTGSMEEKCDAAASLVSL-ARDNDRYGKLIIEEGGVPPLLKLAYEG-ELEGQENAARAIGLLGRD-AESVEQ  227 (654)
Q Consensus       151 v~~lV~lL~s~~~~~k~~Aa~aL~~L-a~~~~~~~~~I~e~G~Ip~LV~LL~s~-~~~~q~~Aa~AL~nLa~~-~e~~~~  227 (654)
                      |-++|+.|++++++.+..|+..++.+ +.+.....+.|+++|+||+||++|++. ++.+|++|+|||+||+.+ +++++.
T Consensus        59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~  138 (510)
T 3ul1_B           59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA  138 (510)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            56669999999999999999999986 444445689999999999999999855 589999999999999875 689999


Q ss_pred             HHHcCchHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhccchhhhH
Q 006250          228 IVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNISSLHS  307 (654)
Q Consensus       228 iv~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~~~i~~  307 (654)
                      |++.|+||.|+++|+++++++++.|+|+|+||+.+++++|+.+.+.|++++|+.+|.+..........+.+.  .+.+..
T Consensus       139 vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a--~~~L~n  216 (510)
T 3ul1_B          139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL--TWTLSN  216 (510)
T ss_dssp             HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHH--HHHHHH
T ss_pred             HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHH--HHHHHH
Confidence            999999999999999999999999999999999988999999999999999999998764322211101000  012222


Q ss_pred             HHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCCCCccc
Q 006250          308 ALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQ  387 (654)
Q Consensus       308 l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (654)
                      ++....+                              ...+..+                            .+.+|.+.
T Consensus       217 l~~~~~~------------------------------~~~~~~~----------------------------~~~lp~L~  238 (510)
T 3ul1_B          217 LCRNKNP------------------------------APPLDAV----------------------------EQILPTLV  238 (510)
T ss_dssp             HHCCCSS------------------------------CCCHHHH----------------------------HHHHHHHH
T ss_pred             Hhhcccc------------------------------hhHHHHH----------------------------HhHHHHHH
Confidence            2211000                              0000000                            01112232


Q ss_pred             hhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHHHHHhh
Q 006250          388 DQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALMEITAV  467 (654)
Q Consensus       388 ~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~~Iaa~  467 (654)
                      .++.          .+++    +++..|++||++|+.++.+..+.+.+.|+++.|+.+|++++..++..++++|++|+.+
T Consensus       239 ~LL~----------~~~~----~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~  304 (510)
T 3ul1_B          239 RLLH----------HNDP----EVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG  304 (510)
T ss_dssp             HHTT----------CSCH----HHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHh----------cCCH----HHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcC
Confidence            2221          2444    4678999999999999999999999999999999999999999999999999999754


Q ss_pred             cccChHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchh-----hhhccHHHHHHHhccCCHHHH
Q 006250          468 AEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRA-----TETRIIGPLVNLLDEREPEVI  542 (654)
Q Consensus       468 ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~-----~e~~~I~pLV~lL~~~~~~v~  542 (654)
                      .+   ..++...      ..++++.|+.++.+.+++++..++++|+||+.....     .+.++||+|+++|++++++++
T Consensus       305 ~~---~~~~~i~------~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~  375 (510)
T 3ul1_B          305 TD---EQTQKVI------DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQ  375 (510)
T ss_dssp             CH---HHHHHHH------HTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHH
T ss_pred             CH---HHHHHHh------hccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHH
Confidence            33   3332211      123567788999999999999999999999975443     245789999999999999999


Q ss_pred             HHHHHHHHhccccCCCCCHHHHHHHHHCCCHHHHHHhhccCCcchHHHHHHHHHHHHh---CCCchHHHHhhhhhHHHHh
Q 006250          543 MEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTLLCYIAI---KQPESKTLAQEEVLIVLEW  619 (654)
Q Consensus       543 ~eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~ia~---~~~~~~~l~~~~~l~~l~~  619 (654)
                      ++|+|||+|+++++   ..++..++++.|++++|++||++.|+.++..++.+|.+|..   +.+..+.+.     ..+++
T Consensus       376 ~~Aa~aL~Nl~~~~---~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~-----~~iee  447 (510)
T 3ul1_B          376 KEAAWAITNYTSGG---TVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLS-----IMIEE  447 (510)
T ss_dssp             HHHHHHHHHHHHHC---CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHH-----HHHHH
T ss_pred             HHHHHHHHHHHccC---CHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHH-----HHHHH
Confidence            99999999998766   37889999999999999999999999888889999888832   333333221     11222


Q ss_pred             --hhhhhhhhcCccHHhHHHHHHHHHHhhhcCC
Q 006250          620 --SFKQAHLVAEPSIEALLPEAKSTLATYQSRD  650 (654)
Q Consensus       620 --~~~~~~~~q~~~~~~l~~~a~~~l~~y~~~~  650 (654)
                        |.+.++.+|+|+++++|.+|..++|.||+..
T Consensus       448 ~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~  480 (510)
T 3ul1_B          448 CGGLDKIEALQRHENESVYKASLNLIEKYFSVE  480 (510)
T ss_dssp             TTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC--
T ss_pred             cCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc
Confidence              5566677899999999999999999999743
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A Back     alignment and structure
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} Back     alignment and structure
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} Back     alignment and structure
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 654
d1xm9a1457 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo 4e-20
d1xm9a1 457 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo 4e-05
d1xm9a1457 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo 0.003
d1jdha_529 a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) 7e-19
d1jdha_529 a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) 2e-09
d1jdha_529 a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) 2e-08
d1jdha_529 a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) 8e-05
d1q1sc_434 a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus 1e-13
d1wa5b_503 a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S 6e-12
d1wa5b_503 a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S 4e-07
d2vgla_584 a.118.1.10 (A:) Adaptin alpha C subunit N-terminal 8e-04
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.4 bits (225), Expect = 4e-20
 Identities = 51/453 (11%), Positives = 125/453 (27%), Gaps = 20/453 (4%)

Query: 155 IAILHTGSMEEKCDAAASLVSLARDNDRYGKLIIEEGGVPPLLKLAYEGELEGQENAARA 214
           +  L +   + +   A  +      ++   + + + GG+  L+ L        Q+ AA A
Sbjct: 8   VQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGA 67

Query: 215 IG-LLGRDAESVEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQN 273
           +  L+ R   +  +             L+             +    S+  + ++    +
Sbjct: 68  LRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIAD 127

Query: 274 NIVRFLVSHLAFETVQEHSKYAIASKQNISSLHSALVASNSQNPKDHRTAPPQQQGNGNI 333
            +       +   +        ++ +     +                     +  +G I
Sbjct: 128 ALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLI 187

Query: 334 SK-VSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNHHNQHQDQQVL 392
              ++      A S   +             +    A+  +    ++ N  N + ++   
Sbjct: 188 DSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSST 247

Query: 393 GGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPED 452
           G  S K   S+          +          G L     +     L+      +   + 
Sbjct: 248 GCFSNK---SDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMG-----KSKKDA 299

Query: 453 VKHFSAMALMEITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAI 512
                A AL  +TA     S                 L Q+  +++  +SD++      +
Sbjct: 300 TLEACAGALQNLTASKGLMSSGMSQLIGLKEKG----LPQIARLLQSGNSDVVRSGASLL 355

Query: 513 GNLAR---TFRATETRIIGPLVNLLDEREPEVIMEATVALNKFATTENYL--SETHSKAI 567
            N++R     R    ++   +  LL            +  +   T  N +      +K  
Sbjct: 356 SNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQY 415

Query: 568 INAGGVKHLIQLVY-FGEQMIQIPALTLLCYIA 599
            ++  + ++I L            A  LL  + 
Sbjct: 416 FSSSMLNNIINLCRSSASPKAAEAARLLLSDMW 448
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query654
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 100.0
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 100.0
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 99.97
d1jdha_ 529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 99.97
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 99.95
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 99.95
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 99.93
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 99.9
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 99.82
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 99.76
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 99.17
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.13
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.09
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.03
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 98.99
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 98.9
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 98.52
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 98.27
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 98.09
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 98.06
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 98.05
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.03
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 98.02
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 97.98
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 97.95
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 97.52
d1ho8a_477 Regulatory subunit H of the V-type ATPase {Baker's 97.42
d1ho8a_477 Regulatory subunit H of the V-type ATPase {Baker's 97.4
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 97.38
d1qgra_ 876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 97.03
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 96.88
d2bpta1 861 Importin beta {Baker's yeast (Saccharomyces cerevi 96.83
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 90.06
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 88.07
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 86.95
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.8e-34  Score=305.70  Aligned_cols=410  Identities=14%  Similarity=0.146  Sum_probs=313.5

Q ss_pred             hhhhhHHHHcccccCCCHHHHHHHHHHHHHhccC-CchhHHHHHhcCCHHHHHHhhccC-CHHHHHHHHHHHHHhcCC-c
Q 006250          146 PILCLIWEQIAILHTGSMEEKCDAAASLVSLARD-NDRYGKLIIEEGGVPPLLKLAYEG-ELEGQENAARAIGLLGRD-A  222 (654)
Q Consensus       146 ~i~~~v~~lV~lL~s~~~~~k~~Aa~aL~~La~~-~~~~~~~I~e~G~Ip~LV~LL~s~-~~~~q~~Aa~AL~nLa~~-~  222 (654)
                      .+.+.|+++|+.|++++++.+..|+.+|+++... .....+.+++.|+||+|+++|++. ++++|..|+++|++|+.+ +
T Consensus        10 ~~~~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~   89 (434)
T d1q1sc_          10 TVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTS   89 (434)
T ss_dssp             SSSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCH
T ss_pred             hhhhhHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCh
Confidence            3445588889999999999999999999998643 222367889999999999999755 578999999999999876 5


Q ss_pred             chHHHHHHcCchHHHHHhhcCCChhHHHHHHHHHHHHhcCChhhHHHHHhCCcHHHHHHhhccCchhhhhHHHHHhhccc
Q 006250          223 ESVEQIVNAGVCSTFAKNLKDGHMKVQSVVAWAVSELASNHPKCQDHFAQNNIVRFLVSHLAFETVQEHSKYAIASKQNI  302 (654)
Q Consensus       223 e~~~~iv~~GaIp~Lv~LL~s~~~~vq~~Aa~aL~nLa~~~~~~r~~i~~~g~I~~LV~LL~~~~~~~~~~~al~~~~~~  302 (654)
                      +.+..+++.|++|.|+++|++++.++++.++|+|+||+.+++++++.+.+.|+++.|+.++...........        
T Consensus        90 ~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~--------  161 (434)
T d1q1sc_          90 EQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACG--------  161 (434)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHH--------
T ss_pred             hhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHH--------
Confidence            788999999999999999999999999999999999999889999999999999999999987653222111        


Q ss_pred             hhhhHHHHhhcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCcchhhHHhhhhhhcccCCCcccccCCcccccccCCCC
Q 006250          303 SSLHSALVASNSQNPKDHRTAPPQQQGNGNISKVSCPMPNQANSSISNVVTNTIAIKTRAPTNAQQAQPDSHMYAMQPNH  382 (654)
Q Consensus       303 ~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~vv~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~  382 (654)
                       .+....+........                         .+.........+                          .
T Consensus       162 -~~~~~~~~l~~~~~~-------------------------~~~~~~~~~~~~--------------------------~  189 (434)
T d1q1sc_         162 -YLRNLTWTLSNLCRN-------------------------KNPAPPLDAVEQ--------------------------I  189 (434)
T ss_dssp             -HHHHHHHHHHHHTCC-------------------------CTTCCCHHHHHH--------------------------H
T ss_pred             -HHHHHHHHHHHHhhc-------------------------ccccchhhhhhh--------------------------H
Confidence             111111111110000                         000000000000                          0


Q ss_pred             CCccchhhhhcCCCCCCCCCCChhHHHHHHHHHHHHHHHhhcCChHHHHHHHhhCcHHHHHHhhccCChhHHHHHHHHHH
Q 006250          383 HNQHQDQQVLGGTSTKGRESEDPTVKAQMKAMAARALWKLSKGNLSICRNLTESRALLCFAVLLEKGPEDVKHFSAMALM  462 (654)
Q Consensus       383 ~~~~~~~~s~~~~~~~~~~~~dp~~~~~lk~~Aa~AL~~La~gn~~~~~~i~e~gaL~~L~~LL~~~~~~v~~~aa~AL~  462 (654)
                      +|.+..++          ...|+    .++..|+++|++++.++.+....+.+.|+++.|+.++++++.+++..++++|.
T Consensus       190 l~~l~~ll----------~~~~~----~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~  255 (434)
T d1q1sc_         190 LPTLVRLL----------HHNDP----EVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIG  255 (434)
T ss_dssp             HHHHHHHT----------TCSCH----HHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHH----------hcccc----chhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhh
Confidence            11111111          12444    36788999999999999888888999999999999999999999999999999


Q ss_pred             HHHhhcccChHhhhhccCCCchHHHHHHHHHHHHhhhcCcchhhHHHHHHHHhhhcchh-----hhhccHHHHHHHhccC
Q 006250          463 EITAVAEKNSDLRRSAFKPTSTAAKAVLEQLLHIVEKADSDLLIPSIRAIGNLARTFRA-----TETRIIGPLVNLLDER  537 (654)
Q Consensus       463 ~Iaa~ae~~~~lrr~a~~~~s~~~~~vv~~L~~ll~~~~~~l~~~~~~alg~la~~~~~-----~e~~~I~pLV~lL~~~  537 (654)
                      +++.+   +++.++..+.      .++++.|..++++.+++++..++++|++++.....     .+.+++++++++|.+.
T Consensus       256 ~l~~~---~~~~~~~~~~------~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~  326 (434)
T d1q1sc_         256 NIVTG---TDEQTQKVID------AGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA  326 (434)
T ss_dssp             HHTTS---CHHHHHHHHH------TTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSS
T ss_pred             hHHhh---hhHHHHHHHh------ccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhcc
Confidence            99753   3333332111      23556788999999999999999999999975443     2457899999999999


Q ss_pred             CHHHHHHHHHHHHhccccCCCCCHHHHHHHHHCCCHHHHHHhhccCCcchHHHHHHHHHHHH---hCCCchH----HHHh
Q 006250          538 EPEVIMEATVALNKFATTENYLSETHSKAIINAGGVKHLIQLVYFGEQMIQIPALTLLCYIA---IKQPESK----TLAQ  610 (654)
Q Consensus       538 ~~~v~~eAa~AL~~~a~~~n~~~~~~~~~Iv~~ggi~~Lv~LL~~~~~~~q~~Al~~L~~ia---~~~~~~~----~l~~  610 (654)
                      +++++.+|+|+|+|++...   ..++...+++.|++++|++++.++|+.++..++.+|.++.   .+.++.+    .+.+
T Consensus       327 ~~~v~~~a~~~l~nl~~~~---~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~  403 (434)
T d1q1sc_         327 DFKTQKEAAWAITNYTSGG---TVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEE  403 (434)
T ss_dssp             CHHHHHHHHHHHHHHHHHS---CHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHhcC---CHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence            9999999999999998655   3678889999999999999999998877777888887773   2344332    3344


Q ss_pred             hhhhHHHHhhhhhhhhhcCccHHhHHHHHHHHHHhhhc
Q 006250          611 EEVLIVLEWSFKQAHLVAEPSIEALLPEAKSTLATYQS  648 (654)
Q Consensus       611 ~~~l~~l~~~~~~~~~~q~~~~~~l~~~a~~~l~~y~~  648 (654)
                      .|++..++       .+|+|++++++..|..+||.||+
T Consensus       404 ~~~~~~i~-------~L~~~~n~~i~~~a~~il~~~f~  434 (434)
T d1q1sc_         404 CGGLDKIE-------ALQRHENESVYKASLNLIEKYFS  434 (434)
T ss_dssp             TTSHHHHH-------HHHTCSSHHHHHHHHHHHHHHCC
T ss_pred             cCCHHHHH-------HHHcCCCHHHHHHHHHHHHHHhC
Confidence            55555544       46999999999999999999996
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure