Citrus Sinensis ID: 006253

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650---
MSAEVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGLWRIRYCLIVMGL
ccHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcHHHHHHHHHHcccccccccccHHHHHHHHHHHHcHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcHHHHHHHHccc
cHHcHHHHHHHcccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcHHHHccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcHHHcHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcHHcccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcHHHHHHccHHccc
MSAEVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGelvndekpveSRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKtlsspahdarsTASQVVAKVAGielphkqwPELIGALLSnihqlpphtkqaTLETLGYICEevssdaveqDHVNKILTAVVQGmnasesnnDVRLAATRALYNALGFaqanfsndmerDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAkavredeepVALQAIEFWSSVCDEEIDILEeyggdfsgdsdipcfyfikhalpVLVPLLLETLLKqeedqdqdEGAWNIAMAGGTCLGLVartvgddivplvmpfveeNITKQEWRQREAATYAFgsilegpspeklvPLVNIALNFMLTAlmqdpnnhvkdttawTLGRMFEflhgstletpiinqgNCQQIISVLLQSMKDVPNVAEKACGALYFLAQgfedaispsspltpFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVrcstdetapmVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGLWRIRYCLIVMGL
MSAEVTQIllnaqsvdgtVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKtlsspahdarSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGsilegpspEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHRedagesrlrtaayeTLNEvvrcstdetAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGLWRIRYCLIVMGL
MSAEVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHAlpvlvpllletllkqeedqdqdeGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGLWRIRYCLIVMGL
**********************************LPGFLLSLAGELVND*****SRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTL***********SQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNA***NNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQ*******EGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQT****************IQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGLWRIRYCLIVM**
MSAEVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDI***************CFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQK***D*REKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAI**ATAHEEAMLAIGALAYATGLWRIRYCLIVMGL
MSAEVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSS***********VVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQ***********EIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGLWRIRYCLIVMGL
***EVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGLWRIRYCLIVMGL
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MSAEVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATGLWRIRYCLIVMGL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query653 2.2.26 [Sep-21-2011]
O13864 863 Importin subunit beta-1 O yes no 0.926 0.701 0.405 1e-115
P70168 876 Importin subunit beta-1 O yes no 0.961 0.716 0.384 1e-114
Q14974 876 Importin subunit beta-1 O yes no 0.961 0.716 0.383 1e-114
P52296 875 Importin subunit beta-1 O yes no 0.960 0.716 0.381 1e-111
O18388 884 Importin subunit beta OS= yes no 0.977 0.721 0.358 1e-101
Q06142 861 Importin subunit beta-1 O yes no 0.946 0.717 0.345 3e-85
Q8H0U4 891 Transportin-1 OS=Arabidop no no 0.765 0.561 0.234 5e-26
B9FDR3 891 Transportin-1 OS=Oryza sa no no 0.653 0.479 0.226 2e-19
B8ARW2 890 Transportin-1 OS=Oryza sa N/A no 0.653 0.479 0.228 2e-19
Q3SYU7 898 Transportin-1 OS=Bos taur no no 0.751 0.546 0.21 3e-15
>sp|O13864|IMB1_SCHPO Importin subunit beta-1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=kap95 PE=3 SV=1 Back     alignment and function desciption
 Score =  416 bits (1070), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 256/632 (40%), Positives = 374/632 (59%), Gaps = 27/632 (4%)

Query: 14  SVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQH 73
           S D  VR  AE+ L+     +   +++ LA EL ND      R  AGL LKNA+ A+E+ 
Sbjct: 12  SPDANVRLNAEKQLENAARTDFAQYMVLLAQELANDNSMPYIRMAAGLALKNAITAREEA 71

Query: 74  RKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELI 133
           RK E  Q W SL   +K Q+KS  L+TL S  H A  +A+Q+VA +A  EL   QWP+L+
Sbjct: 72  RKLEYQQLWQSLPVEIKQQVKSLALQTLGSSEHQAGQSAAQLVAAIAAYELATNQWPDLM 131

Query: 134 GALLSNIHQLPPHT-KQATLETLGYICEEVSSDAVEQDHVNKILTAVVQGMNASESNNDV 192
             L++N+ +  P   KQ +L+T+GYICE VS + +     N ILTAVV G    E +  V
Sbjct: 132 VTLVANVGEGQPSALKQHSLQTIGYICESVSPEVLSAQS-NAILTAVVAGARKEEPDAAV 190

Query: 193 RLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFECLVAISSTYYE 252
           RLAA  ALY++L F + NF+N+ ER+YIM+VVCEAT SPE  I+ AAF CLV I   YY+
Sbjct: 191 RLAALGALYDSLEFVRENFNNEYERNYIMQVVCEATQSPEASIQTAAFGCLVKIMHLYYD 250

Query: 253 KLAPYIQD-IFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPC- 310
            +  Y++  +F +T + +    E VALQA+EFWS+VC+EEI++  E   +    +++P  
Sbjct: 251 TMPFYMEKALFALTTQGMYNTNEQVALQAVEFWSTVCEEEIEVNLEI-QEAQDLNEVPAR 309

Query: 311 --FYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLV 368
               F + A   ++P+LL+ L  Q+ED D+D+  WNI+MA  TCL L A+ VGD IV  V
Sbjct: 310 QNHGFARAAAADILPVLLKLLCNQDEDADEDD--WNISMAAATCLQLFAQVVGDLIVNPV 367

Query: 369 MPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQDPNNHVKD 428
           + FVE+NI   +W QREAA  AFGS+LEGP+   L PLVN AL  ++  +M DP   VKD
Sbjct: 368 LAFVEQNIQNPDWHQREAAVMAFGSVLEGPNVAMLTPLVNQALPVLIN-MMVDPVIFVKD 426

Query: 429 TTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGALYFLAQGF 488
           TTAW LG++  F+  +    P I   +   ++S LLQ + D P +    C A   L   F
Sbjct: 427 TTAWALGQISSFVADAI--NPEI---HLSPMVSALLQGLTDNPRIVANCCWAFMNLVCHF 481

Query: 489 EDAIS-PSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVM 547
               +  +S +TPF++ I+ +LL VT ++   E+  RT+ YETL  ++  S+D   PM+ 
Sbjct: 482 APVDNHQTSVMTPFYEAIIGSLLHVTDQK-GNENNSRTSGYETLGTLITFSSDSVLPMIA 540

Query: 548 QLVPLIMMELHQT--LEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQY 605
            ++ +I+  L  +  +++Q L  ++R   +E+Q  LC  L  II++ G   +T       
Sbjct: 541 NVLSIILTRLETSIQMQSQILDVEDRANHDELQSNLCNVLTSIIRRFGPDIRTS------ 594

Query: 606 ADQMMGLFLRVF--AIRSATAHEEAMLAIGAL 635
           +DQ+M L L+    A + +  HE+ +LAIGA+
Sbjct: 595 SDQIMNLLLQTMQTAPKQSVVHEDVLLAIGAM 626
Required for nuclear protein import and mediates docking of import substrate to distinct nucleoporins. Serves a receptor for nuclear localization signals.
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
>sp|P70168|IMB1_MOUSE Importin subunit beta-1 OS=Mus musculus GN=Kpnb1 PE=1 SV=2 Back     alignment and function description
>sp|Q14974|IMB1_HUMAN Importin subunit beta-1 OS=Homo sapiens GN=KPNB1 PE=1 SV=2 Back     alignment and function description
>sp|P52296|IMB1_RAT Importin subunit beta-1 OS=Rattus norvegicus GN=Kpnb1 PE=1 SV=1 Back     alignment and function description
>sp|O18388|IMB_DROME Importin subunit beta OS=Drosophila melanogaster GN=Fs(2)Ket PE=2 SV=2 Back     alignment and function description
>sp|Q06142|IMB1_YEAST Importin subunit beta-1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=KAP95 PE=1 SV=1 Back     alignment and function description
>sp|Q8H0U4|TNPO1_ARATH Transportin-1 OS=Arabidopsis thaliana GN=TRN1 PE=1 SV=1 Back     alignment and function description
>sp|B9FDR3|TNPO1_ORYSJ Transportin-1 OS=Oryza sativa subsp. japonica GN=TRN1 PE=3 SV=2 Back     alignment and function description
>sp|B8ARW2|TNPO1_ORYSI Transportin-1 OS=Oryza sativa subsp. indica GN=OsI_18044 PE=2 SV=1 Back     alignment and function description
>sp|Q3SYU7|TNPO1_BOVIN Transportin-1 OS=Bos taurus GN=TNPO1 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query653
255570599 871 importin beta-1, putative [Ricinus commu 0.978 0.733 0.885 0.0
225455336 871 PREDICTED: importin subunit beta-1-like 0.978 0.733 0.884 0.0
302143924 950 unnamed protein product [Vitis vinifera] 0.978 0.672 0.884 0.0
356523655 870 PREDICTED: importin subunit beta-1-like 0.986 0.740 0.879 0.0
356513257 870 PREDICTED: importin subunit beta-1-like 0.986 0.740 0.874 0.0
224120862 871 predicted protein [Populus trichocarpa] 0.978 0.733 0.868 0.0
255549603 897 importin beta-1, putative [Ricinus commu 0.987 0.719 0.862 0.0
449456395 871 PREDICTED: importin subunit beta-1-like 0.978 0.733 0.857 0.0
357123795 872 PREDICTED: importin subunit beta-1-like 0.987 0.739 0.814 0.0
326488415 847 predicted protein [Hordeum vulgare subsp 0.987 0.761 0.806 0.0
>gi|255570599|ref|XP_002526256.1| importin beta-1, putative [Ricinus communis] gi|223534421|gb|EEF36125.1| importin beta-1, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1195 bits (3092), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 567/640 (88%), Positives = 609/640 (95%), Gaps = 1/640 (0%)

Query: 1   MSAEVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAG 60
           M+ EVTQ+LLNAQS+DG VRK AEESLKQ+QEQNLP FLLSL+GEL NDEKPV+SRKLAG
Sbjct: 1   MAMEVTQVLLNAQSIDGNVRKHAEESLKQFQEQNLPSFLLSLSGELANDEKPVDSRKLAG 60

Query: 61  LILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVA 120
           LILKNALDAKEQHRK ELVQRWLSLD++VK+QIK+F+LKTLSSP  DARSTASQV+AKVA
Sbjct: 61  LILKNALDAKEQHRKLELVQRWLSLDNNVKSQIKAFLLKTLSSPIADARSTASQVIAKVA 120

Query: 121 GIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVV 180
           GIELP KQWPELIG+LLSNIHQLP H KQATLETLGY+CEEVS D V+QD VNKILTAVV
Sbjct: 121 GIELPQKQWPELIGSLLSNIHQLPAHVKQATLETLGYLCEEVSPDVVDQDQVNKILTAVV 180

Query: 181 QGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAF 240
           QGMNASE NNDVRLAATRALYNAL FAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAF
Sbjct: 181 QGMNASEGNNDVRLAATRALYNALSFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAF 240

Query: 241 ECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGG 300
           ECLV+ISSTYYEKLAPYIQDIF+ITAK+VREDEEPVALQAIEFWSS+CDEEIDILEEYGG
Sbjct: 241 ECLVSISSTYYEKLAPYIQDIFSITAKSVREDEEPVALQAIEFWSSICDEEIDILEEYGG 300

Query: 301 DFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTV 360
           DF+GDS+IPCFYFIK ALP LVP+LLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTV
Sbjct: 301 DFTGDSEIPCFYFIKQALPALVPMLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTV 360

Query: 361 GDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQ 420
           GDDIVPLVMPF+EENITK +WRQREAATYAFGSILEGPSP+KL P+VN+ALNFML+AL +
Sbjct: 361 GDDIVPLVMPFIEENITKPDWRQREAATYAFGSILEGPSPDKLTPIVNVALNFMLSALTK 420

Query: 421 DPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGA 480
           DPNNHVKDTTAWTLGR+FEFLHGSTL+ PII Q NCQQII+VLLQSMKD PNVAEKACGA
Sbjct: 421 DPNNHVKDTTAWTLGRIFEFLHGSTLDAPIITQANCQQIITVLLQSMKDAPNVAEKACGA 480

Query: 481 LYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTD 540
           LYFLAQG+E+ + PSSPLTP+FQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTD
Sbjct: 481 LYFLAQGYEE-VGPSSPLTPYFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTD 539

Query: 541 ETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKY 600
           ETAPMV+QLVP+IMMELH+TLE QKLSSDEREKQ+E+QGLLCGCLQVIIQKLGSSE TKY
Sbjct: 540 ETAPMVLQLVPVIMMELHKTLEGQKLSSDEREKQSELQGLLCGCLQVIIQKLGSSEPTKY 599

Query: 601 VFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATG 640
           VFMQYADQ+MGLFLRVFA RSAT HEEAMLAIGALAYATG
Sbjct: 600 VFMQYADQIMGLFLRVFACRSATVHEEAMLAIGALAYATG 639

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225455336|ref|XP_002276600.1| PREDICTED: importin subunit beta-1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|302143924|emb|CBI23029.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356523655|ref|XP_003530452.1| PREDICTED: importin subunit beta-1-like [Glycine max] Back     alignment and taxonomy information
>gi|356513257|ref|XP_003525330.1| PREDICTED: importin subunit beta-1-like [Glycine max] Back     alignment and taxonomy information
>gi|224120862|ref|XP_002318437.1| predicted protein [Populus trichocarpa] gi|222859110|gb|EEE96657.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255549603|ref|XP_002515853.1| importin beta-1, putative [Ricinus communis] gi|223545008|gb|EEF46522.1| importin beta-1, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449456395|ref|XP_004145935.1| PREDICTED: importin subunit beta-1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357123795|ref|XP_003563593.1| PREDICTED: importin subunit beta-1-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|326488415|dbj|BAJ93876.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query653
TAIR|locus:2168586 870 AT5G53480 "AT5G53480" [Arabido 0.977 0.733 0.803 6.2e-275
TAIR|locus:2830447 873 AT3G08947 [Arabidopsis thalian 0.986 0.737 0.579 3.3e-195
TAIR|locus:2830442 871 AT3G08943 [Arabidopsis thalian 0.986 0.739 0.579 3e-194
POMBASE|SPAC1B1.03c 863 kap95 "karyopherin Kap95" [Sch 0.940 0.711 0.387 1.4e-105
ZFIN|ZDB-GENE-030131-2579 876 kpnb1 "karyopherin (importin) 0.961 0.716 0.372 2.6e-102
UNIPROTKB|F1RWJ5 877 KPNB1 "Uncharacterized protein 0.961 0.716 0.368 5.4e-102
MGI|MGI:107532 876 Kpnb1 "karyopherin (importin) 0.961 0.716 0.366 1.1e-101
UNIPROTKB|E1BFV0 876 KPNB1 "Uncharacterized protein 0.961 0.716 0.366 1.8e-101
UNIPROTKB|E2R2I0 878 KPNB1 "Uncharacterized protein 0.961 0.715 0.366 1.8e-101
UNIPROTKB|F6X637 876 KPNB1 "Uncharacterized protein 0.961 0.716 0.366 1.8e-101
TAIR|locus:2168586 AT5G53480 "AT5G53480" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2643 (935.4 bits), Expect = 6.2e-275, P = 6.2e-275
 Identities = 514/640 (80%), Positives = 564/640 (88%)

Query:     1 MSAEVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAG 60
             M+ EVTQ+L+NAQS+DGTVRK AEESLKQ+QEQNL GFLLSLAGEL NDEKPV+SRKLAG
Sbjct:     1 MAMEVTQLLINAQSIDGTVRKHAEESLKQFQEQNLAGFLLSLAGELANDEKPVDSRKLAG 60

Query:    61 LILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVA 120
             L+LKNALDAKEQHRK+ELVQRWL+LD S K+QI++F+LKTLS+P  D RSTASQV+AKVA
Sbjct:    61 LVLKNALDAKEQHRKYELVQRWLALDMSTKSQIRAFLLKTLSAPVPDVRSTASQVIAKVA 120

Query:   121 GIELPHKQWPELIGALLSNIHQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVV 180
             GIELP KQWPELI +LLSNIHQLP H KQATLETLGY+CEEVS D VEQ+HVNKILTAVV
Sbjct:   121 GIELPQKQWPELIVSLLSNIHQLPAHVKQATLETLGYLCEEVSPDVVEQEHVNKILTAVV 180

Query:   181 QGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAF 240
             QGMNA+E N DVRLAATRALY ALGFAQANF+NDMERDYIMRVVCEATLSPEVKIRQAAF
Sbjct:   181 QGMNAAEGNTDVRLAATRALYMALGFAQANFNNDMERDYIMRVVCEATLSPEVKIRQAAF 240

Query:   241 ECLVAISSTYYEKLAPYIQDIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGG 300
             ECLV+I+STYYEKLA Y+QDIFNITAKAVRED+E VALQAIEFWSS+CDEEIDILEEYGG
Sbjct:   241 ECLVSIASTYYEKLAHYMQDIFNITAKAVREDDESVALQAIEFWSSICDEEIDILEEYGG 300

Query:   301 DFSGDSDIPCFYFIKHAXXXXXXXXXXXXXXXXXXXXXXXGAWNIAMAGGTCLGLVARTV 360
             +F+GDSD+PCFYF K A                       GAWNIAMAGGTCLGLVAR V
Sbjct:   301 EFAGDSDVPCFYFTKQALPGLVPLLLETLLKQEEDQDLDEGAWNIAMAGGTCLGLVARAV 360

Query:   361 GDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTALMQ 420
             GDDIVP VMPF+EE I+K +WR+REAATYAFGSILEGPS +KL+ +VN AL FML AL  
Sbjct:   361 GDDIVPHVMPFIEEKISKPDWREREAATYAFGSILEGPSADKLMAIVNAALTFMLNALTN 420

Query:   421 DPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGA 480
             DP+NHVKDTTAWTLGR+FEFLHGST+ETPIINQ NCQQII+VL+QSM D PNVAEKACGA
Sbjct:   421 DPSNHVKDTTAWTLGRIFEFLHGSTIETPIINQANCQQIITVLIQSMNDAPNVAEKACGA 480

Query:   481 LYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTD 540
             LYFLAQG+ED I PSSPLTPFFQEI+++LL V HREDA ESRLRTAAYE LNEVVRCSTD
Sbjct:   481 LYFLAQGYED-IGPSSPLTPFFQEIIKSLLAVAHREDATESRLRTAAYEALNEVVRCSTD 539

Query:   541 ETAPMVMQLVPLIMMELHQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKY 600
             ET+ MV+QLVP+IMMELH TLE +KLS DEREKQNE+QGLLCGCLQVIIQKLGS E TK 
Sbjct:   540 ETSTMVLQLVPVIMMELHNTLEGEKLSLDEREKQNELQGLLCGCLQVIIQKLGS-EPTKS 598

Query:   601 VFMQYADQMMGLFLRVFAIRSATAHEEAMLAIGALAYATG 640
              FM+YADQMMGLFLRVF  RSATAHEEAMLAIGALAYA G
Sbjct:   599 KFMEYADQMMGLFLRVFGCRSATAHEEAMLAIGALAYAAG 638
GO:0000059 "protein import into nucleus, docking" evidence=ISS
GO:0005634 "nucleus" evidence=ISS
GO:0005643 "nuclear pore" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISM;ISS
GO:0006886 "intracellular protein transport" evidence=IEA
GO:0008565 "protein transporter activity" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=IDA
GO:0005829 "cytosol" evidence=RCA
GO:0052541 "plant-type cell wall cellulose metabolic process" evidence=RCA
GO:0052546 "cell wall pectin metabolic process" evidence=RCA
TAIR|locus:2830447 AT3G08947 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2830442 AT3G08943 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
POMBASE|SPAC1B1.03c kap95 "karyopherin Kap95" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-2579 kpnb1 "karyopherin (importin) beta 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1RWJ5 KPNB1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:107532 Kpnb1 "karyopherin (importin) beta 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E1BFV0 KPNB1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2R2I0 KPNB1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F6X637 KPNB1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query653
COG5215 858 COG5215, KAP95, Karyopherin (importin) beta [Intra 1e-133
pfam0381071 pfam03810, IBN_N, Importin-beta N-terminal domain 1e-12
smart0091367 smart00913, IBN_N, Importin-beta N-terminal domain 4e-09
pfam1351355 pfam13513, HEAT_EZ, HEAT-like repeat 5e-08
COG5657 947 COG5657, CSE1, CAS/CSE protein involved in chromos 5e-06
COG5656 970 COG5656, SXM1, Importin, protein involved in nucle 4e-04
>gnl|CDD|227540 COG5215, KAP95, Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information 
 Score =  411 bits (1057), Expect = e-133
 Identities = 199/646 (30%), Positives = 317/646 (49%), Gaps = 25/646 (3%)

Query: 2   SAEVTQILLNAQ-SVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAG 60
            +E   +  N   S D   R +AE  L + Q  +   F+  L   L +     + R +AG
Sbjct: 3   KSEFRCLGKNHVLSPDPNARLRAEAQLLELQSGDFEQFISLLVQVLCDLNSNDQLRMVAG 62

Query: 61  LILKNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVA 120
           LILKN+L A +   +    QRWL +    K Q+K   L+ L SP     + A+Q++A +A
Sbjct: 63  LILKNSLHANDPELQKGCSQRWLGMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIA 122

Query: 121 GIELPHKQWPELIGALLSNI-HQLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAV 179
            +ELP+  WP L+  ++ N+  + P   K  +L   GY CE  + + + Q   N IL A+
Sbjct: 123 RMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMS-NVILFAI 181

Query: 180 VQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAA 239
           V G   +E+ + VRLAA +AL ++L F Q NF  + ER+Y M+VVCEAT   + +++ AA
Sbjct: 182 VMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAA 241

Query: 240 FECLVAISSTYYEKLAPYIQD-IFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEY 298
           F CL  I   YY+ +  Y+++ +  +T + ++   + VA+QA+EFWS++C+EEID   E 
Sbjct: 242 FGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDG--EM 299

Query: 299 GGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVAR 358
              +  +       F + A+  ++P LL  L KQ ED   D+  WN +MA  +CL L A+
Sbjct: 300 EDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDD--WNPSMAASSCLQLFAQ 357

Query: 359 TVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTAL 418
             GD I+  V+ FVE+NI  + W  REAA  AFGS++ GP  + L  +V  AL  +    
Sbjct: 358 LKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIEN-E 416

Query: 419 MQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKAC 478
           M D    VK TTAW  G + + +        I   G+    +S  L  + D P  +    
Sbjct: 417 MSDSCLWVKSTTAWCFGAIADHVAMI-----ISPCGHLVLEVSASLIGLMDCPFRSINCS 471

Query: 479 GALYFLAQGFEDAISP-SSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRC 537
                L      A+    S L  F+  I+ AL+  T      ES LR + +  L  ++  
Sbjct: 472 WRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELAL-NESNLRVSLFSALGTLILI 530

Query: 538 STDETAPMVMQLVPLIMMELHQTL--EAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSS 595
             D  + ++         +L + +    Q L+++++    E+Q    G L+ II+     
Sbjct: 531 CPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRD 590

Query: 596 EQTKYVFMQYADQMMGLFLRVF-AIRSATAHEEAMLAIGALAYATG 640
            +         DQ+M LF+R+  + +  TA  +   AI AL+ +  
Sbjct: 591 IED------VEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLE 630

Length = 858
>gnl|CDD|217743 pfam03810, IBN_N, Importin-beta N-terminal domain Back     alignment and domain information
>gnl|CDD|197981 smart00913, IBN_N, Importin-beta N-terminal domain Back     alignment and domain information
>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat Back     alignment and domain information
>gnl|CDD|227944 COG5657, CSE1, CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|227943 COG5656, SXM1, Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 653
KOG1241 859 consensus Karyopherin (importin) beta 1 [Nuclear s 100.0
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 100.0
KOG2023 885 consensus Nuclear transport receptor Karyopherin-b 100.0
COG5215 858 KAP95 Karyopherin (importin) beta [Intracellular t 100.0
KOG1991 1010 consensus Nuclear transport receptor RANBP7/RANBP8 100.0
KOG1992 960 consensus Nuclear export receptor CSE1/CAS (import 100.0
KOG1993 978 consensus Nuclear transport receptor KAP120 (impor 100.0
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 100.0
KOG2274 1005 consensus Predicted importin 9 [Intracellular traf 100.0
KOG2023 885 consensus Nuclear transport receptor Karyopherin-b 99.97
KOG1241 859 consensus Karyopherin (importin) beta 1 [Nuclear s 99.97
COG5656 970 SXM1 Importin, protein involved in nuclear import 99.96
KOG1824 1233 consensus TATA-binding protein-interacting protein 99.95
KOG2021 980 consensus Nuclear mRNA export factor receptor LOS1 99.94
COG5215 858 KAP95 Karyopherin (importin) beta [Intracellular t 99.94
KOG1824 1233 consensus TATA-binding protein-interacting protein 99.91
COG5101 1053 CRM1 Importin beta-related nuclear transport recep 99.9
KOG0213 1172 consensus Splicing factor 3b, subunit 1 [RNA proce 99.89
COG5657 947 CSE1 CAS/CSE protein involved in chromosome segreg 99.88
KOG2022 982 consensus Nuclear transport receptor LGL2 (importi 99.87
KOG2081559 consensus Nuclear transport regulator [Intracellul 99.79
KOG1242569 consensus Protein containing adaptin N-terminal re 99.79
KOG1242569 consensus Protein containing adaptin N-terminal re 99.78
COG5181 975 HSH155 U2 snRNP spliceosome subunit [RNA processin 99.77
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 99.72
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 99.72
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 99.71
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 99.71
KOG0212 675 consensus Uncharacterized conserved protein [Funct 99.67
KOG0915 1702 consensus Uncharacterized conserved protein [Funct 99.66
PTZ00429 746 beta-adaptin; Provisional 99.63
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 99.6
KOG0212 675 consensus Uncharacterized conserved protein [Funct 99.6
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 99.59
PTZ00429 746 beta-adaptin; Provisional 99.57
KOG19911010 consensus Nuclear transport receptor RANBP7/RANBP8 99.47
KOG0915 1702 consensus Uncharacterized conserved protein [Funct 99.47
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 99.46
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 99.44
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 99.44
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 99.4
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 99.38
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 99.34
PRK09687280 putative lyase; Provisional 99.34
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 99.34
PF08506370 Cse1: Cse1; InterPro: IPR013713 The exchange of ma 99.32
KOG2020 1041 consensus Nuclear transport receptor CRM1/MSN5 (im 99.32
PRK09687280 putative lyase; Provisional 99.29
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 99.29
KOG1059 877 consensus Vesicle coat complex AP-3, delta subunit 99.26
KOG1943 1133 consensus Beta-tubulin folding cofactor D [Posttra 99.23
KOG1943 1133 consensus Beta-tubulin folding cofactor D [Posttra 99.14
KOG1060 968 consensus Vesicle coat complex AP-3, beta subunit 99.12
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 99.1
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 99.07
KOG1060 968 consensus Vesicle coat complex AP-3, beta subunit 99.04
PF0381077 IBN_N: Importin-beta N-terminal domain; InterPro: 99.03
KOG1248 1176 consensus Uncharacterized conserved protein [Funct 99.03
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 98.95
KOG1248 1176 consensus Uncharacterized conserved protein [Funct 98.95
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 98.93
KOG4535728 consensus HEAT and armadillo repeat-containing pro 98.92
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 98.86
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 98.85
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 98.85
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 98.83
KOG1062 866 consensus Vesicle coat complex AP-1, gamma subunit 98.81
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 98.8
KOG1062 866 consensus Vesicle coat complex AP-1, gamma subunit 98.8
KOG1020 1692 consensus Sister chromatid cohesion protein SCC2/N 98.79
COG5240 898 SEC21 Vesicle coat complex COPI, gamma subunit [In 98.76
KOG4224550 consensus Armadillo repeat protein VAC8 required f 98.74
KOG1059 877 consensus Vesicle coat complex AP-3, delta subunit 98.71
KOG1020 1692 consensus Sister chromatid cohesion protein SCC2/N 98.68
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 98.67
KOG1992 960 consensus Nuclear export receptor CSE1/CAS (import 98.56
KOG4224550 consensus Armadillo repeat protein VAC8 required f 98.54
COG5240 898 SEC21 Vesicle coat complex COPI, gamma subunit [In 98.49
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 98.46
PF08389148 Xpo1: Exportin 1-like protein; InterPro: IPR013598 98.46
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 98.45
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 98.44
KOG2274 1005 consensus Predicted importin 9 [Intracellular traf 98.44
KOG1058 948 consensus Vesicle coat complex COPI, beta subunit 98.4
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 98.37
KOG2021980 consensus Nuclear mRNA export factor receptor LOS1 98.35
KOG2259 823 consensus Uncharacterized conserved protein [Funct 98.26
KOG1058 948 consensus Vesicle coat complex COPI, beta subunit 98.25
PF14500262 MMS19_N: Dos2-interacting transcription regulator 98.16
KOG2956516 consensus CLIP-associating protein [General functi 98.16
KOG1410 1082 consensus Nuclear transport receptor RanBP16 (impo 98.12
KOG1820 815 consensus Microtubule-associated protein [Cytoskel 98.1
KOG2032533 consensus Uncharacterized conserved protein [Funct 98.08
PF05804708 KAP: Kinesin-associated protein (KAP) 98.08
KOG04141251 consensus Chromosome condensation complex Condensi 98.04
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 97.98
KOG4535728 consensus HEAT and armadillo repeat-containing pro 97.98
KOG4413524 consensus 26S proteasome regulatory complex, subun 97.94
COG5096757 Vesicle coat complex, various subunits [Intracellu 97.94
KOG2259 823 consensus Uncharacterized conserved protein [Funct 97.9
KOG2956516 consensus CLIP-associating protein [General functi 97.89
KOG2022982 consensus Nuclear transport receptor LGL2 (importi 97.87
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 97.87
KOG1078 865 consensus Vesicle coat complex COPI, gamma subunit 97.85
KOG1820 815 consensus Microtubule-associated protein [Cytoskel 97.85
KOG1077 938 consensus Vesicle coat complex AP-2, alpha subunit 97.85
KOG2025 892 consensus Chromosome condensation complex Condensi 97.85
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 97.84
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 97.81
PF13001501 Ecm29: Proteasome stabiliser; InterPro: IPR024372 97.76
KOG19671030 consensus DNA repair/transcription protein Mms19 [ 97.75
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 97.72
PLN030761780 ARF guanine nucleotide exchange factor (ARF-GEF); 97.69
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 97.69
PF03378435 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I 97.69
KOG2032533 consensus Uncharacterized conserved protein [Funct 97.67
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 97.63
PF05804708 KAP: Kinesin-associated protein (KAP) 97.62
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 97.61
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 97.6
TIGR02270410 conserved hypothetical protein. Members are found 97.59
KOG4653982 consensus Uncharacterized conserved protein [Funct 97.57
COG1413335 FOG: HEAT repeat [Energy production and conversion 97.57
KOG1078 865 consensus Vesicle coat complex COPI, gamma subunit 97.56
KOG4413 524 consensus 26S proteasome regulatory complex, subun 97.53
PLN030761780 ARF guanine nucleotide exchange factor (ARF-GEF); 97.52
PF08167165 RIX1: rRNA processing/ribosome biogenesis 97.52
PF05004309 IFRD: Interferon-related developmental regulator ( 97.49
PF14500262 MMS19_N: Dos2-interacting transcription regulator 97.48
TIGR02270410 conserved hypothetical protein. Members are found 97.48
COG1413335 FOG: HEAT repeat [Energy production and conversion 97.46
KOG19671030 consensus DNA repair/transcription protein Mms19 [ 97.45
KOG0168 1051 consensus Putative ubiquitin fusion degradation pr 97.43
KOG4653982 consensus Uncharacterized conserved protein [Funct 97.43
COG5096 757 Vesicle coat complex, various subunits [Intracellu 97.42
PF05004309 IFRD: Interferon-related developmental regulator ( 97.41
KOG1077 938 consensus Vesicle coat complex AP-2, alpha subunit 97.37
COG5218 885 YCG1 Chromosome condensation complex Condensin, su 97.37
PF01603409 B56: Protein phosphatase 2A regulatory B subunit ( 97.36
KOG1293678 consensus Proteins containing armadillo/beta-caten 97.35
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 97.32
PF08167165 RIX1: rRNA processing/ribosome biogenesis 97.29
KOG2549576 consensus Transcription initiation factor TFIID, s 97.25
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 97.24
KOG1993978 consensus Nuclear transport receptor KAP120 (impor 97.23
PF13251182 DUF4042: Domain of unknown function (DUF4042) 97.21
KOG0168 1051 consensus Putative ubiquitin fusion degradation pr 97.18
KOG1243690 consensus Protein kinase [General function predict 97.17
KOG1517 1387 consensus Guanine nucleotide binding protein MIP1 97.17
PF10521282 DUF2454: Protein of unknown function (DUF2454); In 97.16
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 97.12
PF11865160 DUF3385: Domain of unknown function (DUF3385); Int 97.11
PF10274183 ParcG: Parkin co-regulated protein; InterPro: IPR0 97.05
KOG0891 2341 consensus DNA-dependent protein kinase [Replicatio 97.02
PF13251182 DUF4042: Domain of unknown function (DUF4042) 97.01
cd00256429 VATPase_H VATPase_H, regulatory vacuolar ATP synth 96.96
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 96.91
KOG1243690 consensus Protein kinase [General function predict 96.89
KOG1517 1387 consensus Guanine nucleotide binding protein MIP1 96.83
KOG45241014 consensus Uncharacterized conserved protein [Funct 96.82
KOG04141251 consensus Chromosome condensation complex Condensi 96.81
KOG1293678 consensus Proteins containing armadillo/beta-caten 96.76
PF03378 435 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I 96.74
KOG2025 892 consensus Chromosome condensation complex Condensi 96.71
PF08506370 Cse1: Cse1; InterPro: IPR013713 The exchange of ma 96.7
KOG1525 1266 consensus Sister chromatid cohesion complex Cohesi 96.65
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 96.63
KOG2933334 consensus Uncharacterized conserved protein [Funct 96.62
cd08050343 TAF6 TATA Binding Protein (TBP) Associated Factor 96.57
PF01603409 B56: Protein phosphatase 2A regulatory B subunit ( 96.53
KOG2933334 consensus Uncharacterized conserved protein [Funct 96.49
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 96.46
PF05536 543 Neurochondrin: Neurochondrin 96.41
KOG4500604 consensus Rho/Rac GTPase guanine nucleotide exchan 96.38
PF04510174 DUF577: Family of unknown function (DUF577); Inter 96.38
KOG0392 1549 consensus SNF2 family DNA-dependent ATPase domain- 96.34
PF10274183 ParcG: Parkin co-regulated protein; InterPro: IPR0 96.32
PF08064107 UME: UME (NUC010) domain; InterPro: IPR012993 This 96.24
KOG1949 1005 consensus Uncharacterized conserved protein [Funct 96.24
KOG0392 1549 consensus SNF2 family DNA-dependent ATPase domain- 96.11
KOG0946 970 consensus ER-Golgi vesicle-tethering protein p115 96.1
PF11865160 DUF3385: Domain of unknown function (DUF3385); Int 96.09
KOG0891 2341 consensus DNA-dependent protein kinase [Replicatio 96.03
smart00802107 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. 95.99
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 95.92
PF10521282 DUF2454: Protein of unknown function (DUF2454); In 95.78
KOG2062929 consensus 26S proteasome regulatory complex, subun 95.76
PF14664371 RICTOR_N: Rapamycin-insensitive companion of mTOR, 95.73
PF12231372 Rif1_N: Rap1-interacting factor 1 N terminal; Inte 95.7
KOG2137700 consensus Protein kinase [Signal transduction mech 95.7
KOG2062929 consensus 26S proteasome regulatory complex, subun 95.67
COG5095450 TAF6 Transcription initiation factor TFIID, subuni 95.63
KOG1525 1266 consensus Sister chromatid cohesion complex Cohesi 95.63
COG5656970 SXM1 Importin, protein involved in nuclear import 95.61
KOG1949 1005 consensus Uncharacterized conserved protein [Funct 95.58
KOG2081559 consensus Nuclear transport regulator [Intracellul 95.56
COG5095450 TAF6 Transcription initiation factor TFIID, subuni 95.55
PF03224312 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 95.43
COG5218 885 YCG1 Chromosome condensation complex Condensin, su 95.29
KOG0889 3550 consensus Histone acetyltransferase SAGA, TRRAP/TR 95.24
KOG2213460 consensus Apoptosis inhibitor 5/fibroblast growth 95.24
smart00802107 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. 95.17
PF13001501 Ecm29: Proteasome stabiliser; InterPro: IPR024372 95.13
COG5098 1128 Chromosome condensation complex Condensin, subunit 95.12
KOG0413 1529 consensus Uncharacterized conserved protein relate 94.75
PF12054441 DUF3535: Domain of unknown function (DUF3535); Int 94.59
PF14631 1426 FancD2: Fanconi anaemia protein FancD2 nuclease; P 94.53
PF11864464 DUF3384: Domain of unknown function (DUF3384); Int 94.47
PF14664371 RICTOR_N: Rapamycin-insensitive companion of mTOR, 94.45
KOG2149393 consensus Uncharacterized conserved protein [Funct 94.35
PF08064107 UME: UME (NUC010) domain; InterPro: IPR012993 This 94.32
KOG0889 3550 consensus Histone acetyltransferase SAGA, TRRAP/TR 94.29
PF1036392 DUF2435: Protein of unknown function (DUF2435) 94.21
KOG0803 1312 consensus Predicted E3 ubiquitin ligase [Posttrans 94.15
COG5116 926 RPN2 26S proteasome regulatory complex component [ 94.14
KOG2549576 consensus Transcription initiation factor TFIID, s 94.11
COG5098 1128 Chromosome condensation complex Condensin, subunit 94.06
KOG2137700 consensus Protein kinase [Signal transduction mech 93.99
KOG2759442 consensus Vacuolar H+-ATPase V1 sector, subunit H 93.97
KOG2149 393 consensus Uncharacterized conserved protein [Funct 93.87
PF08623169 TIP120: TATA-binding protein interacting (TIP20); 93.6
PF04118307 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do 93.6
PF01347618 Vitellogenin_N: Lipoprotein amino terminal region; 93.58
PF0051441 Arm: Armadillo/beta-catenin-like repeat; InterPro: 93.52
smart00638574 LPD_N Lipoprotein N-terminal Domain. 93.47
KOG0413 1529 consensus Uncharacterized conserved protein relate 93.41
PF1036392 DUF2435: Protein of unknown function (DUF2435) 93.36
COG5116 926 RPN2 26S proteasome regulatory complex component [ 93.15
KOG09291514 consensus Guanine nucleotide exchange factor [Intr 92.9
PF08767 319 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 92.72
PF0757192 DUF1546: Protein of unknown function (DUF1546); In 92.58
PF12231372 Rif1_N: Rap1-interacting factor 1 N terminal; Inte 92.55
PF03224312 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 92.54
PF11698119 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 92.47
PF12530234 DUF3730: Protein of unknown function (DUF3730) ; I 92.14
cd08050343 TAF6 TATA Binding Protein (TBP) Associated Factor 91.58
PF08623169 TIP120: TATA-binding protein interacting (TIP20); 91.32
PF0932486 DUF1981: Domain of unknown function (DUF1981); Int 91.26
PF12830187 Nipped-B_C: Sister chromatid cohesion C-terminus 91.01
PF04118307 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do 90.67
KOG18511710 consensus Uncharacterized conserved protein [Funct 90.58
KOG1048717 consensus Neural adherens junction protein Plakoph 90.55
KOG3961262 consensus Uncharacterized conserved protein [Funct 90.39
KOG1822 2067 consensus Uncharacterized conserved protein [Funct 90.24
KOG0567289 consensus HEAT repeat-containing protein [General 90.05
PF01347618 Vitellogenin_N: Lipoprotein amino terminal region; 90.03
PF08569335 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro 89.82
PF12830187 Nipped-B_C: Sister chromatid cohesion C-terminus 89.59
KOG1848 1610 consensus Uncharacterized conserved protein [Funct 89.51
PF08767319 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 89.46
cd00256429 VATPase_H VATPase_H, regulatory vacuolar ATP synth 89.12
PF12397121 U3snoRNP10: U3 small nucleolar RNA-associated prot 88.48
PF0051441 Arm: Armadillo/beta-catenin-like repeat; InterPro: 88.2
PF1191990 DUF3437: Domain of unknown function (DUF3437); Int 88.19
PF1466873 RICTOR_V: Rapamycin-insensitive companion of mTOR, 88.13
PF11864464 DUF3384: Domain of unknown function (DUF3384); Int 87.78
smart00638574 LPD_N Lipoprotein N-terminal Domain. 87.25
PF14868559 DUF4487: Domain of unknown function (DUF4487) 86.47
PF11698119 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 86.36
PF12530234 DUF3730: Protein of unknown function (DUF3730) ; I 86.11
cd03561133 VHS VHS domain family; The VHS domain is present i 85.98
KOG0567289 consensus HEAT repeat-containing protein [General 85.42
KOG0803 1312 consensus Predicted E3 ubiquitin ligase [Posttrans 85.29
KOG18511710 consensus Uncharacterized conserved protein [Funct 85.28
PF08389148 Xpo1: Exportin 1-like protein; InterPro: IPR013598 85.07
smart0018541 ARM Armadillo/beta-catenin-like repeats. Approx. 4 84.43
cd03568144 VHS_STAM VHS domain family, STAM subfamily; member 84.17
PF12333102 Ipi1_N: Rix1 complex component involved in 60S rib 83.91
PF08569335 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro 83.8
KOG4199461 consensus Uncharacterized conserved protein [Funct 82.86
cd03567139 VHS_GGA VHS domain family, GGA subfamily; GGA (Gol 82.67
KOG2011 1048 consensus Sister chromatid cohesion complex Cohesi 82.55
smart00288133 VHS Domain present in VPS-27, Hrs and STAM. Unpubl 82.37
KOG4500604 consensus Rho/Rac GTPase guanine nucleotide exchan 81.94
cd03561133 VHS VHS domain family; The VHS domain is present i 81.32
cd03569142 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s 80.9
PF1276542 Cohesin_HEAT: HEAT repeat associated with sister c 80.76
cd03569142 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s 80.43
PF04388668 Hamartin: Hamartin protein; InterPro: IPR007483 Th 80.24
cd03572122 ENTH_epsin_related ENTH domain, Epsin Related fami 80.22
PF0932486 DUF1981: Domain of unknown function (DUF1981); Int 80.18
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=1.7e-79  Score=603.17  Aligned_cols=636  Identities=50%  Similarity=0.791  Sum_probs=586.3

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHHHHHHhhCcchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhhc
Q 006253            3 AEVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRW   82 (653)
Q Consensus         3 ~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~   82 (653)
                      |++.++|.+++|||+.+|++|+.+|.+++..|+|.|+..|.+++.|.+.++..|++|++.|||.+..+..+++.+...+|
T Consensus         1 ~~~~~~le~tlSpD~n~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRW   80 (859)
T KOG1241|consen    1 MELLELLEKTLSPDQNVRKRAEKQLEQAQSQNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRW   80 (859)
T ss_pred             CcHHHHHHHHcCCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999998899999999999999999999999999999999


Q ss_pred             cCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCChh-HHHHHHHHHHHHHhh
Q 006253           83 LSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLPPH-TKQATLETLGYICEE  161 (653)
Q Consensus        83 ~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~~~-~~~~~l~~l~~l~~~  161 (653)
                      ..++.+.|++||..+++.|+++.+..++.|+++++.||..+.|.+.||++++.+.....++.+. ++++++.+++.+|+.
T Consensus        81 l~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~  160 (859)
T KOG1241|consen   81 LQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICED  160 (859)
T ss_pred             HcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHcc
Confidence            9999999999999999999999999999999999999999999999999999999999887655 899999999999999


Q ss_pred             hcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHHH
Q 006253          162 VSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFE  241 (653)
Q Consensus       162 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~  241 (653)
                      .+|+.+ ..+.+.++..++++....+++..+|.+|++||.+.++|.+.+|..+..++.+|+.++..++.+|.+++.+++.
T Consensus       161 i~pevl-~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~  239 (859)
T KOG1241|consen  161 IDPEVL-EQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQ  239 (859)
T ss_pred             CCHHHH-HHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHH
Confidence            988877 7888999999999998778999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhHHhhHHhHHH-HHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHhhhhh
Q 006253          242 CLVAISSTYYEKLAPYIQD-IFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKHALPV  320 (653)
Q Consensus       242 ~l~~l~~~~~~~~~~~l~~-l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  320 (653)
                      ||.+++..+|+++.+|+.+ +++..+..+++++++|..++++||+++|+++.++..++.+..+....=.+++|.+..++.
T Consensus       240 ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~  319 (859)
T KOG1241|consen  240 CLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQD  319 (859)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhH
Confidence            9999999999999999986 999999999999999999999999999999999887776443332210367899999999


Q ss_pred             hHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcCCCC
Q 006253          321 LVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSP  400 (653)
Q Consensus       321 l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~~~~  400 (653)
                      ++|+|++.|.+++||+|+|+  |++.++|..||..++.++|++++|+++|++.+.+.+++|+.|+++.+++|++.+|..+
T Consensus       320 v~P~Ll~~L~kqde~~d~Dd--Wnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~  397 (859)
T KOG1241|consen  320 VVPVLLELLTKQDEDDDDDD--WNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEP  397 (859)
T ss_pred             hhHHHHHHHHhCCCCccccc--CcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCch
Confidence            99999999998887766544  9999999999999999999999999999999999999999999999999999999877


Q ss_pred             CcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccchhhHHHHHHHH
Q 006253          401 EKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKACGA  480 (653)
Q Consensus       401 ~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a~~a  480 (653)
                      ....++..+.+|.++..+ .|+...||.++.|++|++++.+++     +.....++..+++.++..+.|.|+|..++||+
T Consensus       398 ~~Lt~iV~qalp~ii~lm-~D~sl~VkdTaAwtlgrI~d~l~e-----~~~n~~~l~~~l~~l~~gL~DePrva~N~CWA  471 (859)
T KOG1241|consen  398 DKLTPIVIQALPSIINLM-SDPSLWVKDTAAWTLGRIADFLPE-----AIINQELLQSKLSALLEGLNDEPRVASNVCWA  471 (859)
T ss_pred             hhhhHHHhhhhHHHHHHh-cCchhhhcchHHHHHHHHHhhchh-----hcccHhhhhHHHHHHHHHhhhCchHHHHHHHH
Confidence            888999999999999999 999999999999999999999986     34678899999999999999999999999999


Q ss_pred             HHHHHhcccCCC---CCCCCCchhHHHHHHHHHHhccccccchhchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Q 006253          481 LYFLAQGFEDAI---SPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMMEL  557 (653)
Q Consensus       481 l~~~~~~~~~~~---~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l  557 (653)
                      +..+++.+.+..   +......||++.|+..|++.....+.+++++|..++++|+.+++..+..+.|....+.+.++..+
T Consensus       472 f~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl  551 (859)
T KOG1241|consen  472 FISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKL  551 (859)
T ss_pred             HHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence            999997764420   12235668999999999999988775578999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCChhHHHhHHHHHHHHHhHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhc-cCcchhhhHHHHHHHHH
Q 006253          558 HQTLEAQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAI-RSATAHEEAMLAIGALA  636 (653)
Q Consensus       558 ~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~-~~~~~~e~~~~~~~~l~  636 (653)
                      .++++++..+.+|++++..+++.++.+++.+.+.+|+.      +.++.+.+|..+++.++. ++..+.|+++.+++.++
T Consensus       552 ~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~------~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~  625 (859)
T KOG1241|consen  552 DQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSD------IREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLA  625 (859)
T ss_pred             HHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHcccc------chhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHH
Confidence            99999877888899888899999999999999999997      999999999999999998 56678999999999999


Q ss_pred             HHhccCCccc-----hhhhcCC
Q 006253          637 YATGLWRIRY-----CLIVMGL  653 (653)
Q Consensus       637 ~~~~~~f~~y-----~~i~~~l  653 (653)
                      ..+|.+|..|     |++..||
T Consensus       626 ~~Lg~~F~kym~~f~pyL~~gL  647 (859)
T KOG1241|consen  626 ESLGKGFAKYMPAFKPYLLMGL  647 (859)
T ss_pred             HHHhHhHHHHHHHHHHHHHHHh
Confidence            9999999999     6666554

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton] Back     alignment and domain information
>KOG2032 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton] Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 Back     alignment and domain information
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] Back     alignment and domain information
>KOG2032 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>KOG4653 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4653 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism Back     alignment and domain information
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF13251 DUF4042: Domain of unknown function (DUF4042) Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1243 consensus Protein kinase [General function prediction only] Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length Back     alignment and domain information
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter Back     alignment and domain information
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair] Back     alignment and domain information
>PF13251 DUF4042: Domain of unknown function (DUF4042) Back     alignment and domain information
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>KOG1243 consensus Protein kinase [General function prediction only] Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG4524 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] Back     alignment and domain information
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2933 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex Back     alignment and domain information
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism Back     alignment and domain information
>KOG2933 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>PF05536 Neurochondrin: Neurochondrin Back     alignment and domain information
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] Back     alignment and domain information
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins Back     alignment and domain information
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] Back     alignment and domain information
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter Back     alignment and domain information
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] Back     alignment and domain information
>KOG1949 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length Back     alignment and domain information
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair] Back     alignment and domain information
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] Back     alignment and domain information
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term Back     alignment and domain information
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length Back     alignment and domain information
>KOG2137 consensus Protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1949 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 Back     alignment and domain information
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 Back     alignment and domain information
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] Back     alignment and domain information
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised Back     alignment and domain information
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B Back     alignment and domain information
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised Back     alignment and domain information
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term Back     alignment and domain information
>KOG2149 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] Back     alignment and domain information
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG2137 consensus Protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information
>KOG2149 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription [] Back     alignment and domain information
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans) Back     alignment and domain information
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] Back     alignment and domain information
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES) Back     alignment and domain information
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6) Back     alignment and domain information
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length Back     alignment and domain information
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length Back     alignment and domain information
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex Back     alignment and domain information
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription [] Back     alignment and domain information
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins Back     alignment and domain information
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus Back     alignment and domain information
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans) Back     alignment and domain information
>KOG1851 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] Back     alignment and domain information
>KOG3961 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1822 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] Back     alignment and domain information
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis Back     alignment and domain information
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus Back     alignment and domain information
>KOG1848 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES) Back     alignment and domain information
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments Back     alignment and domain information
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length Back     alignment and domain information
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless Back     alignment and domain information
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised Back     alignment and domain information
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5 Back     alignment and domain information
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>PF14868 DUF4487: Domain of unknown function (DUF4487) Back     alignment and domain information
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length Back     alignment and domain information
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) Back     alignment and domain information
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1851 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>smart00185 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) Back     alignment and domain information
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ] Back     alignment and domain information
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis Back     alignment and domain information
>KOG4199 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins Back     alignment and domain information
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>smart00288 VHS Domain present in VPS-27, Hrs and STAM Back     alignment and domain information
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] Back     alignment and domain information
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) Back     alignment and domain information
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) Back     alignment and domain information
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion Back     alignment and domain information
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) Back     alignment and domain information
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor Back     alignment and domain information
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain Back     alignment and domain information
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query653
1ukl_A 876 Crystal Structure Of Importin-Beta And Srebp-2 Comp 1e-108
2p8q_A 876 Crystal Structure Of Human Importin Beta Bound To T 1e-107
1qgk_A 876 Structure Of Importin Beta Bound To The Ibb Domain 1e-107
1m5n_S485 Crystal Structure Of Heat Repeats (1-11) Of Importi 3e-88
2qna_A 762 Crystal Structure Of Human Importin-Beta (127-876) 4e-86
1ibr_D462 Complex Of Ran With Importin Beta Length = 462 7e-86
1f59_A442 Importin-Beta-Fxfg Nucleoporin Complex Length = 442 2e-85
1gcj_A460 N-Terminal Fragment Of Importin-Beta Length = 460 3e-83
2bpt_A 861 Structure Of The Nup1p:kap95p Complex Length = 861 1e-78
3nd2_A 861 Structure Of Yeast Importin-Beta (Kap95p) Length = 1e-78
2h4m_A 865 Karyopherin Beta2TRANSPORTIN-M9nls Length = 865 3e-17
2ot8_A 852 Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex Len 9e-17
2qmr_A 890 Karyopherin Beta2TRANSPORTIN Length = 890 2e-15
1qbk_B 890 Structure Of The Karyopherin Beta2-ran Gppnhp Nucle 6e-14
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex Length = 876 Back     alignment and structure 
Iteration: 1

 Score =  388 bits (997), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 243/660 (36%), Positives = 373/660 (56%), Gaps = 32/660 (4%)
Query: 4   EVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLIL 63
           E+  IL    S D    + A++ L++   +NLP FL+ L+  L N      +R  AGL +
Sbjct: 2   ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQI 61
Query: 64  KNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIE 123
           KN+L +K+   K +  QRWL++D++ + ++K+++L+TL +  +   S+ASQ VA +A  E
Sbjct: 62  KNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAE 120
Query: 124 LPHKQWPELIGALLSNIHQ--LPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQ 181
           +P  QWPELI  L++N+       H K++TLE +GYIC+++  + + QD  N+ILTA++Q
Sbjct: 121 IPVSQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQL-QDKSNEILTAIIQ 179
Query: 182 GMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFE 241
           GM   E +N+V+LAAT AL N+L F +ANF  + ER +IM+VVCEAT  P+ ++R AA +
Sbjct: 180 GMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQ 239
Query: 242 CLVAISSTYYEKLAPYIQD-IFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEY-- 298
            LV I S YY+ +  Y+   +F IT +A++ D + VALQ IEFWS+VCDEE+D+  E   
Sbjct: 240 NLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASE 299
Query: 299 GGDFSGDSDIPCFYFIKHAXXXXXXXXXXXXXXXXXXXXXXXGAWNIAMAGGTCLGLVAR 358
             +     +    ++ K A                         WN   A G CL L++ 
Sbjct: 300 AAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDD--DWNPCKAAGVCLMLLST 357
Query: 359 TVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTAL 418
              DDIVP V+PF++E+I   +WR R+AA  AFGSILEGP P +L PLV  A+   L  L
Sbjct: 358 CCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGSILEGPEPNQLKPLVIQAMP-TLIEL 416
Query: 419 MQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKAC 478
           M+DP+  V+DTTAWT+GR+ E L  +      IN      ++  L++ +   P VA   C
Sbjct: 417 MKDPSVVVRDTTAWTVGRICELLPEAA-----INDVYLAPLLQCLIEGLSAEPRVASNVC 471
Query: 479 GALYFLAQG-------FEDAISPSS-PLTPFFQEIVQALLTVTHREDAGESRLRTAAYET 530
            A   LA+         +D   P++  L+  F+ IVQ LL  T R D  ++ LR++AYE+
Sbjct: 472 WAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYES 531
Query: 531 LNEVVRCSTDETAPMVMQLVPLIMMELHQTL--EAQKLSSDEREKQNEIQGLLCGCLQVI 588
           L E+V+ S  +  P V +   +IM  L Q L  E+   S+ +R + N++Q LLC  LQ +
Sbjct: 532 LMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNV 591
Query: 589 IQKLGSSEQTKYVFMQYADQMMGLFLRVF--AIRSATAHEEAMLAIGALAYATGLWRIRY 646
           ++K+   +      +Q +D +M   LR+F     S    E+A++A+  L    G   ++Y
Sbjct: 592 LRKVQHQDA-----LQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKY 646
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The Snurportin1 Ibb- Domain Length = 876 Back     alignment and structure
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of Importin Alpha Length = 876 Back     alignment and structure
>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B Bound To The Non-Classical Nls(67-94) Of Pthrp Length = 485 Back     alignment and structure
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In Complex With The Ibb-Domain Of Snurportin1 (1-65) Length = 762 Back     alignment and structure
>pdb|1IBR|D Chain D, Complex Of Ran With Importin Beta Length = 462 Back     alignment and structure
>pdb|1F59|A Chain A, Importin-Beta-Fxfg Nucleoporin Complex Length = 442 Back     alignment and structure
>pdb|1GCJ|A Chain A, N-Terminal Fragment Of Importin-Beta Length = 460 Back     alignment and structure
>pdb|2BPT|A Chain A, Structure Of The Nup1p:kap95p Complex Length = 861 Back     alignment and structure
>pdb|3ND2|A Chain A, Structure Of Yeast Importin-Beta (Kap95p) Length = 861 Back     alignment and structure
>pdb|2H4M|A Chain A, Karyopherin Beta2TRANSPORTIN-M9nls Length = 865 Back     alignment and structure
>pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex Length = 852 Back     alignment and structure
>pdb|2QMR|A Chain A, Karyopherin Beta2TRANSPORTIN Length = 890 Back     alignment and structure
>pdb|1QBK|B Chain B, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 890 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query653
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 1e-150
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 5e-06
1qgr_A 876 Protein (importin beta subunit); transport recepto 1e-149
1qgr_A876 Protein (importin beta subunit); transport recepto 3e-04
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 1e-117
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 1e-103
1wa5_C 960 Importin alpha RE-exporter; nuclear transport/comp 4e-36
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 1e-26
1u6g_C1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 9e-08
2x1g_F 971 Cadmus; transport protein, developmental protein, 6e-25
2x1g_F 971 Cadmus; transport protein, developmental protein, 5e-05
2x19_B 963 Importin-13; nuclear transport, protein transport; 1e-20
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 2e-16
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 2e-13
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 2e-06
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 4e-16
3gjx_A 1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 3e-10
3m1i_C 1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 4e-09
3m1i_C 1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 3e-08
3ibv_A 980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
2db0_A253 253AA long hypothetical protein; heat repeats, hel 6e-07
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 6e-07
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 1e-04
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 2e-05
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 9e-05
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 8e-04
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 Back     alignment and structure
 Score =  455 bits (1172), Expect = e-150
 Identities = 220/649 (33%), Positives = 345/649 (53%), Gaps = 28/649 (4%)

Query: 1   MS-AEVTQILLNA-QSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKL 58
           MS AE  Q+L N+  S D  +R  +E  LK+    N   F    +  L+++   +E R L
Sbjct: 1   MSTAEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRIL 60

Query: 59  AGLILKNALDAKEQHRKFELVQRWL-SLDSSVKAQIKSFILKTLSSPAHDARSTASQVVA 117
           A L LKN L +K+  +  +  QRW+  +    K QIK+  L  L S      + A+Q++A
Sbjct: 61  AALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIA 120

Query: 118 KVAGIELPHKQWPELIGALLSNI-HQLPPHTKQATLETLGYICEEVSSD-AVEQDHVNKI 175
            +A IELPH  WPEL+  ++ N   + P + K+A+L  LGY+CE             N I
Sbjct: 121 AIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNI 180

Query: 176 LTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKI 235
           L A+VQG  ++E++  VRLAA  AL ++L F + N   + ER+Y+M+VVCEAT + ++++
Sbjct: 181 LIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEV 240

Query: 236 RQAAFECLVAISSTYYEKLAPYIQD-IFNITAKAVREDEEPVALQAIEFWSSVCDEEIDI 294
           + AAF CL  I S YY  + PY++  ++ +T   ++   + VA   +EFWS++C+EEIDI
Sbjct: 241 QAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDI 300

Query: 295 LEEYGGDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLG 354
             E        S +  + F   ++  +VP LL  L +Q ED + D+  WN++M+ G CL 
Sbjct: 301 AYEL--AQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDD--WNVSMSAGACLQ 356

Query: 355 LVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFM 414
           L A+  G+ I+  V+ FVE+NIT   WR REAA  AFGSI++GP   +    V+ AL  +
Sbjct: 357 LFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSI 416

Query: 415 LTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVA 474
           L  LM D +  VK+TTAW +GR+ + +  S     I  Q +   ++   L  ++D P VA
Sbjct: 417 LN-LMNDQSLQVKETTAWCIGRIADSVAES-----IDPQQHLPGVVQACLIGLQDHPKVA 470

Query: 475 EKACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEV 534
                 +  L +   +A    SP+  F+  +V  L+   +R D  E   R +A+  L  +
Sbjct: 471 TNCSWTIINLVEQLAEA--TPSPIYNFYPALVDGLIGAANRID-NEFNARASAFSALTTM 527

Query: 535 VRCSTDETAPMVMQLVPLIMMELHQTL--EAQKLSSDEREKQNEIQGLLCGCLQVIIQKL 592
           V  +TD  A     +   +M +L QT+  +  +L+ ++ +   E+Q  +   L  +I+K 
Sbjct: 528 VEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKS 587

Query: 593 GSSEQTKYVFMQYADQMMGLFLRVFAIR-SATAHEEAMLAIGALAYATG 640
            SS          AD +MGLF R+   + SA   ++   AI ALA + G
Sbjct: 588 PSS------VEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLG 630
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Length = 960 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Length = 971 Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Length = 971 Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Length = 963 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Length = 1204 Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Length = 1073 Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Length = 1049 Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Length = 1049 Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Length = 980 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query653
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 100.0
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 100.0
1qgr_A 876 Protein (importin beta subunit); transport recepto 100.0
1wa5_C 960 Importin alpha RE-exporter; nuclear transport/comp 100.0
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 100.0
2x1g_F 971 Cadmus; transport protein, developmental protein, 100.0
2x19_B 963 Importin-13; nuclear transport, protein transport; 100.0
3m1i_C 1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 100.0
4hat_C 1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 100.0
3ibv_A 980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 100.0
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 100.0
3gjx_A 1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 100.0
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 100.0
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 100.0
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 100.0
1qgr_A 876 Protein (importin beta subunit); transport recepto 100.0
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 100.0
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 100.0
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 99.97
1wa5_C 960 Importin alpha RE-exporter; nuclear transport/comp 99.85
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 99.84
2x19_B 963 Importin-13; nuclear transport, protein transport; 99.83
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 99.83
2x1g_F 971 Cadmus; transport protein, developmental protein, 99.82
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 99.81
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 99.8
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 99.79
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 99.78
4hat_C 1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 99.77
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 99.74
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 99.73
3m1i_C 1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 99.73
3ibv_A 980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 99.72
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 99.71
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 99.7
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 99.69
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 99.69
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 99.68
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 99.68
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 99.66
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 99.66
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 99.66
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 99.66
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 99.64
3gjx_A 1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 99.62
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 99.61
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 99.59
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 99.59
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 99.57
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 99.56
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 99.56
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 99.55
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 99.55
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 99.54
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 99.54
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 99.31
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 99.3
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 99.26
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 99.25
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 99.17
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 99.15
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 99.14
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 99.13
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 99.12
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 99.11
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 99.11
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 99.09
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 99.08
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 99.08
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 99.05
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 99.02
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 98.97
3nmz_A458 APC variant protein; protein-protein complex, arma 98.95
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 98.95
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 98.88
2db0_A253 253AA long hypothetical protein; heat repeats, hel 98.87
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 98.81
2db0_A253 253AA long hypothetical protein; heat repeats, hel 98.81
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 98.8
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 98.73
3nmz_A458 APC variant protein; protein-protein complex, arma 98.72
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 98.64
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 98.59
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 98.56
4ady_A 963 RPN2, 26S proteasome regulatory subunit RPN2; prot 98.54
4ady_A963 RPN2, 26S proteasome regulatory subunit RPN2; prot 98.48
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 98.41
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 98.4
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 98.39
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 98.33
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 98.32
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 98.29
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 98.21
4gmo_A 684 Putative uncharacterized protein; ARM, heat, solen 98.19
1vsy_5997 Proteasome activator BLM10; 20S proteasome BLM10, 98.13
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 98.11
3oc3_A 800 Helicase MOT1, MOT1; regulation of transcription, 98.07
3oc3_A 800 Helicase MOT1, MOT1; regulation of transcription, 98.01
3grl_A651 General vesicular transport factor P115; vesicle t 97.98
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 97.96
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 97.86
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 97.53
3l9t_A240 Putative uncharacterized protein SMU.31; hypotheti 97.35
1vsy_5997 Proteasome activator BLM10; 20S proteasome BLM10, 97.35
3grl_A651 General vesicular transport factor P115; vesicle t 97.16
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 97.06
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 96.99
3l9t_A240 Putative uncharacterized protein SMU.31; hypotheti 96.72
1lrv_A244 LRV, leucine-rich repeat variant; leucine-rich rep 96.66
3fga_B403 Serine/threonine-protein phosphatase 2A 56 kDa RE 96.61
2npp_B449 PP2A, B subunit, serine/threonine-protein phosphat 96.58
4gmo_A 684 Putative uncharacterized protein; ARM, heat, solen 96.38
1vsy_4799 Proteasome activator BLM10; 20S proteasome BLM10, 96.33
1vsy_4 799 Proteasome activator BLM10; 20S proteasome BLM10, 95.95
4atg_A196 TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton 95.79
3gs3_A257 Symplekin, LD45768P; helix-turn-helix heat repeat 95.76
3gs3_A257 Symplekin, LD45768P; helix-turn-helix heat repeat 95.43
1lrv_A244 LRV, leucine-rich repeat variant; leucine-rich rep 95.11
3o2t_A386 Symplekin; heat repeat, scaffold, protein binding; 95.04
3o2t_A386 Symplekin; heat repeat, scaffold, protein binding; 94.88
2jak_A392 Serine/threonine-protein phosphatase 2A 56 kDa RE 93.61
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 92.74
4atg_A196 TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton 92.19
2npp_B449 PP2A, B subunit, serine/threonine-protein phosphat 92.09
1w9c_A321 CRM1 protein, exportin 1; nuclear protein, nuclear 90.8
3fga_B403 Serine/threonine-protein phosphatase 2A 56 kDa RE 90.51
1lsh_A 1056 Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro 89.4
3dad_A339 FH1/FH2 domain-containing protein 1; formin, FHOD1 89.1
2jak_A392 Serine/threonine-protein phosphatase 2A 56 kDa RE 88.98
1w9c_A 321 CRM1 protein, exportin 1; nuclear protein, nuclear 88.77
1lsh_A 1056 Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro 87.25
1upk_A341 MO25 protein; transferase, armadillo; HET: MSE; 1. 83.84
1upk_A341 MO25 protein; transferase, armadillo; HET: MSE; 1. 83.07
1juq_A171 ADP-ribosylation factor binding protein GGA3; prot 82.03
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
Probab=100.00  E-value=1.7e-57  Score=516.93  Aligned_cols=630  Identities=34%  Similarity=0.566  Sum_probs=536.5

Q ss_pred             hHHHHHHHHh-cCCChHHHHHHHHHHHHHHhhCcchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhh
Q 006253            3 AEVTQILLNA-QSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQR   81 (653)
Q Consensus         3 ~~l~~ll~~~-~s~d~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~   81 (653)
                      +++.++|+++ .|||++.|++|+++|++++++++|+|+..|++++.+++.++++|++|+++||+.++++|+...++....
T Consensus         4 ~~l~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~   83 (861)
T 2bpt_A            4 AEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQR   83 (861)
T ss_dssp             HHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHH
T ss_pred             HHHHHHHHHcccCcCHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHHHHh
Confidence            5899999999 999999999999999999887789999999999998667899999999999999999998887777788


Q ss_pred             ccC-CChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCC-ChhHHHHHHHHHHHHH
Q 006253           82 WLS-LDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQL-PPHTKQATLETLGYIC  159 (653)
Q Consensus        82 ~~~-l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~-~~~~~~~~l~~l~~l~  159 (653)
                      |.. ++++.+..||+.+++.+.++++.+|++++.+++.|+..++|.+.||++++.|.+.++++ ++..|+.++.+++.++
T Consensus        84 ~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~  163 (861)
T 2bpt_A           84 WITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMC  163 (861)
T ss_dssp             HHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHH
T ss_pred             HhhhCCHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            997 99999999999999999999999999999999999999988558999999999999998 9999999999999999


Q ss_pred             hhhcccc--cchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHH
Q 006253          160 EEVSSDA--VEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQ  237 (653)
Q Consensus       160 ~~~~~~~--~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~  237 (653)
                      +.+.++.  + ..+...+++.+.+.+.++++++++|..|++++..++.++..++.....++.+++.+...+.++++++|.
T Consensus       164 ~~~~~~~~~~-~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~  242 (861)
T 2bpt_A          164 ESADPQSQAL-VSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQA  242 (861)
T ss_dssp             HTSSTTSSTT-GGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHH
T ss_pred             HcCChhhhHH-HHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHH
Confidence            9874442  4 567888999999999842238999999999999998877665544334567888888888889999999


Q ss_pred             HHHHHHHHHHHHhHHhhHHhHH-HHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCCCCCCCCCchhhHHHh
Q 006253          238 AAFECLVAISSTYYEKLAPYIQ-DIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGDFSGDSDIPCFYFIKH  316 (653)
Q Consensus       238 ~~~~~l~~l~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (653)
                      .++++|..++..+++.+.+++. .+++.++..+.+.+++++..++++|..+++..........+.  +.++..+.++..+
T Consensus       243 ~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~  320 (861)
T 2bpt_A          243 AAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQF--PQSPLQSYNFALS  320 (861)
T ss_dssp             HHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHC--TTCSCCCCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhc--cCCchhhHHHHHH
Confidence            9999999999999999999999 999999999999999999999999999988653221110000  0000012345677


Q ss_pred             hhhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhc
Q 006253          317 ALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILE  396 (653)
Q Consensus       317 ~l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~  396 (653)
                      ++..++|.++..|.+.++|+  |+++|++|.+|..+|+.++..+|+.+++.+++.+.+.+.+++|+.|+++++++|.+++
T Consensus       321 ~~~~il~~ll~~l~~~~~d~--~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~  398 (861)
T 2bpt_A          321 SIKDVVPNLLNLLTRQNEDP--EDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMD  398 (861)
T ss_dssp             HHHHHHHHHHHHTTCCCCC---CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHHHHHHHhccccc--ccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHc
Confidence            78889999999888654432  3456999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccchhhHHHH
Q 006253          397 GPSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEK  476 (653)
Q Consensus       397 ~~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~  476 (653)
                      ++.++.+.++++.+++.++..+ +|+++.||.+++|++|+++..+...     .....++..+++.++..+.++++||..
T Consensus       399 ~~~~~~~~~~l~~il~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~-----~~~~~~~~~~l~~l~~~l~~~~~v~~~  472 (861)
T 2bpt_A          399 GPDKVQRTYYVHQALPSILNLM-NDQSLQVKETTAWCIGRIADSVAES-----IDPQQHLPGVVQACLIGLQDHPKVATN  472 (861)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHHHHGGG-----SCTTTTHHHHHHHHHHHHTSCHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHHHHHhhhh-----cCCHHHHHHHHHHHHHHhccChHHHHH
Confidence            8744667788999999999999 9999999999999999999988631     013678999999999999877899999


Q ss_pred             HHHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHhccccccchhchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Q 006253          477 ACGALYFLAQGFEDAISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQLVPLIMME  556 (653)
Q Consensus       477 a~~al~~~~~~~~~~~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~  556 (653)
                      ||+++..+++.+++  ..+..+.||++.+++.|++.+...+. +..+|..++++++.++...|..+.+|+..++|.+++.
T Consensus       473 a~~al~~l~~~~~~--~~~~~l~~~~~~il~~L~~~l~~~d~-~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~  549 (861)
T 2bpt_A          473 CSWTIINLVEQLAE--ATPSPIYNFYPALVDGLIGAANRIDN-EFNARASAFSALTTMVEYATDTVAETSASISTFVMDK  549 (861)
T ss_dssp             HHHHHHHHHHHHSS--SSSCGGGGGHHHHHHHHHHHHTCSCC-GGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccc--ccchhhHHHHHHHHHHHHHHHhCcCc-chHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHH
Confidence            99999999998642  11356889999999999999986543 3578999999999999999999999999999999999


Q ss_pred             HHHHHH--hhcCChhHHHhHHHHHHHHHhHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhccCc-chhhhHHHHHH
Q 006253          557 LHQTLE--AQKLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAIRSA-TAHEEAMLAIG  633 (653)
Q Consensus       557 l~~~~~--~~~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~-~~~e~~~~~~~  633 (653)
                      |...+.  .+..++++++....++..++++++.++..+|..      +.||.+.+++.++..++..+. .+|+.++.+++
T Consensus       550 l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~------~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~  623 (861)
T 2bpt_A          550 LGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSS------VEPVADMLMGLFFRLLEKKDSAFIEDDVFYAIS  623 (861)
T ss_dssp             HHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGG------TGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHH
T ss_pred             HHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhh------hHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHH
Confidence            887531  111233333334567888999999999999987      999999999999999998766 89999999999


Q ss_pred             HHHHHhccCCccc-hhhhcC
Q 006253          634 ALAYATGLWRIRY-CLIVMG  652 (653)
Q Consensus       634 ~l~~~~~~~f~~y-~~i~~~  652 (653)
                      .++..+|.+|.|| |.++|.
T Consensus       624 ~l~~~~~~~~~~~l~~i~~~  643 (861)
T 2bpt_A          624 ALAASLGKGFEKYLETFSPY  643 (861)
T ss_dssp             HHHHHHGGGGHHHHHHHHHH
T ss_pred             HHHHHHhhhHHHHHHHHHHH
Confidence            9999999999999 777764
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A Back     alignment and structure
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Back     alignment and structure
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Back     alignment and structure
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Back     alignment and structure
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Back     alignment and structure
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B* Back     alignment and structure
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20 Back     alignment and structure
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A Back     alignment and structure
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5 Back     alignment and structure
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5 Back     alignment and structure
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae} Back     alignment and structure
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} Back     alignment and structure
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} Back     alignment and structure
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Back     alignment and structure
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* Back     alignment and structure
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* Back     alignment and structure
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20 Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae} Back     alignment and structure
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20 Back     alignment and structure
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19 Back     alignment and structure
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B* Back     alignment and structure
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 Back     alignment and structure
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} Back     alignment and structure
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20 Back     alignment and structure
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19 Back     alignment and structure
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 Back     alignment and structure
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* Back     alignment and structure
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* Back     alignment and structure
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 653
d1qgra_ 876 a.118.1.1 (A:) Importin beta {Human (Homo sapiens) 1e-107
d1qgra_876 a.118.1.1 (A:) Importin beta {Human (Homo sapiens) 0.001
d1qgra_876 a.118.1.1 (A:) Importin beta {Human (Homo sapiens) 0.004
d2bpta1 861 a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( 2e-89
d2bpta1861 a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( 3e-06
d2bpta1861 a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( 4e-04
d1ibrb_458 a.118.1.1 (B:) Importin beta {Human (Homo sapiens) 2e-79
d1qbkb_ 888 a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi 2e-61
d1qbkb_888 a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi 2e-09
d1wa5c_ 959 a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Sacc 2e-54
d1u6gc_ 1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 2e-19
d1u6gc_1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 4e-06
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 6e-09
d2vgla_584 a.118.1.10 (A:) Adaptin alpha C subunit N-terminal 4e-05
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  343 bits (879), Expect = e-107
 Identities = 251/654 (38%), Positives = 381/654 (58%), Gaps = 32/654 (4%)

Query: 4   EVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLIL 63
           E+  IL    S D    + A++ L++   +NLP FL+ L+  L N      +R  AGL +
Sbjct: 2   ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQI 61

Query: 64  KNALDAKEQHRKFELVQRWLSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIE 123
           KN+L +K+   K +  QRWL++D++ + ++K+++L TL +      S+ASQ VA +A  E
Sbjct: 62  KNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTE-TYRPSSASQCVAGIACAE 120

Query: 124 LPHKQWPELIGALLSNIH--QLPPHTKQATLETLGYICEEVSSDAVEQDHVNKILTAVVQ 181
           +P  QWPELI  L++N+       H K++TLE +GYIC+++  + + QD  N+ILTA++Q
Sbjct: 121 IPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQL-QDKSNEILTAIIQ 179

Query: 182 GMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAFE 241
           GM   E +N+V+LAAT AL N+L F +ANF  + ER +IM+VVCEAT  P+ ++R AA +
Sbjct: 180 GMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQ 239

Query: 242 CLVAISSTYYEKLAPYIQD-IFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYG- 299
            LV I S YY+ +  Y+   +F IT +A++ D + VALQ IEFWS+VCDEE+D+  E   
Sbjct: 240 NLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASE 299

Query: 300 -GDFSGDSDIPCFYFIKHALPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVAR 358
             +     +    ++ K AL  LVP+L +TL KQ+E+ D D+  WN   A G CL L+A 
Sbjct: 300 AAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDD--WNPCKAAGVCLMLLAT 357

Query: 359 TVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEGPSPEKLVPLVNIALNFMLTAL 418
              DDIVP V+PF++E+I   +WR R+AA  AFG ILEGP P +L PLV  A+  ++  L
Sbjct: 358 CCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIE-L 416

Query: 419 MQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKAC 478
           M+DP+  V+DT AWT+GR+ E L         IN      ++  L++ +   P VA   C
Sbjct: 417 MKDPSVVVRDTAAWTVGRICELLP-----EAAINDVYLAPLLQCLIEGLSAEPRVASNVC 471

Query: 479 GALYFLAQGFEDAIS--------PSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYET 530
            A   LA+   +A           +  L+  F+ IVQ LL  T R D  ++ LR++AYE+
Sbjct: 472 WAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYES 531

Query: 531 LNEVVRCSTDETAPMVMQLVPLIMMELHQTL--EAQKLSSDEREKQNEIQGLLCGCLQVI 588
           L E+V+ S  +  P V +   +IM  L Q L  E+   S+ +R + N++Q LLC  LQ +
Sbjct: 532 LMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNV 591

Query: 589 IQKLGSSEQTKYVFMQYADQMMGLFLRVF--AIRSATAHEEAMLAIGALAYATG 640
           ++K+   +      +Q +D +M   LR+F     S    E+A++A+  L    G
Sbjct: 592 LRKVQHQD-----ALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLG 640
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876 Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876 Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query653
d1qgra_ 876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 100.0
d2bpta1 861 Importin beta {Baker's yeast (Saccharomyces cerevi 100.0
d1qbkb_ 888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 100.0
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1wa5c_ 959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 100.0
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 99.96
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.95
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.95
d2bpta1 861 Importin beta {Baker's yeast (Saccharomyces cerevi 99.94
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 99.94
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 99.92
d1qgra_ 876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.92
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.78
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.74
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.7
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 99.53
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 99.45
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 99.42
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 99.4
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 99.39
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 99.37
d1wa5c_ 959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 99.35
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 99.25
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 99.25
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 98.92
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 98.91
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 98.73
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 98.62
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 98.37
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 98.23
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 98.17
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 98.14
d2jaka1343 Serine/threonine-protein phosphatase 2A regulatory 95.83
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 95.08
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 93.09
d1upka_330 Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} 92.22
d1ho8a_477 Regulatory subunit H of the V-type ATPase {Baker's 91.61
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 91.44
d2jaka1343 Serine/threonine-protein phosphatase 2A regulatory 90.21
d1w9ca_321 Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax 90.15
d1upka_330 Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} 89.01
d1w9ca_321 Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax 87.0
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 82.39
d1t06a_235 Hypothetical protein BC3264 {Bacillus cereus (stra 81.07
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-51  Score=467.17  Aligned_cols=635  Identities=39%  Similarity=0.640  Sum_probs=527.7

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHHHHHHhhCcchHHHHHHHHHhcCCCChhHHHHHHHHHhhhcchhhhhhHHHhhhhc
Q 006253            3 AEVTQILLNAQSVDGTVRKQAEESLKQYQEQNLPGFLLSLAGELVNDEKPVESRKLAGLILKNALDAKEQHRKFELVQRW   82 (653)
Q Consensus         3 ~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~l~~il~~~~~~~~~r~~a~~~l~~~i~~~~~~~~~~~~~~~   82 (653)
                      |++.++|++++|||+++|++|+++|+++.++++|+|+..|++++.+.+.+.++|++|+++|||.+..+|...++.....|
T Consensus         1 ~~l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~~~~~~~~~~~~~   80 (876)
T d1qgra_           1 MELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRW   80 (876)
T ss_dssp             CCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred             CCHHHHHHHHhCcCHHHHHHHHHHHHHHHhcChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccchhhhhhccc
Confidence            67999999999999999999999999999988999999999999988888999999999999999999998888888899


Q ss_pred             cCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHhhcCCC--hhHHHHHHHHHHHHHh
Q 006253           83 LSLDSSVKAQIKSFILKTLSSPAHDARSTASQVVAKVAGIELPHKQWPELIGALLSNIHQLP--PHTKQATLETLGYICE  160 (653)
Q Consensus        83 ~~l~~~~~~~i~~~ll~~l~~~~~~vr~~~~~~l~~ia~~~~~~~~~~~l~~~l~~~l~~~~--~~~~~~~l~~l~~l~~  160 (653)
                      ..++++.+..||+.+++.+.+++. +|+++|.+++.+++.++|.+.||++++.|.+.+.+++  ...|.+++.+|..+++
T Consensus        81 ~~i~~~~k~~ik~~ll~~l~~~~~-~~~~~a~~i~~i~~~~~p~~~Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~  159 (876)
T d1qgra_          81 LAIDANARREVKNYVLHTLGTETY-RPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQ  159 (876)
T ss_dssp             HTSCHHHHHHHHHHHHHHTTTCCS-SSCHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHCCccccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHH
Confidence            999999999999999999998764 5677999999999999987789999999999987654  6789999999999999


Q ss_pred             hhcccccchhhHhHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHhhhhhcCChhHHHHHHHHHHhhhcCCcHHHHHHHH
Q 006253          161 EVSSDAVEQDHVNKILTAVVQGMNASESNNDVRLAATRALYNALGFAQANFSNDMERDYIMRVVCEATLSPEVKIRQAAF  240 (653)
Q Consensus       161 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~  240 (653)
                      .+.++.+ ..+...+++.+.+.+.+.+++.++|..|++++..++.+....+......+.+++.+...+++++++++..++
T Consensus       160 ~~~~~~~-~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~  238 (876)
T d1qgra_         160 DIDPEQL-QDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAAL  238 (876)
T ss_dssp             HSCHHHH-GGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             HCCHHHH-HHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence            8766666 677889999999999866778999999999999988887766666556677889998889899999999999


Q ss_pred             HHHHHHHHHhHHhhHHhHH-HHHHHHHHHhhcCChhHHHHHHHhHHHhhHHHHhhhhhcCCC-CCC-CCCCchhhHHHhh
Q 006253          241 ECLVAISSTYYEKLAPYIQ-DIFNITAKAVREDEEPVALQAIEFWSSVCDEEIDILEEYGGD-FSG-DSDIPCFYFIKHA  317 (653)
Q Consensus       241 ~~l~~l~~~~~~~~~~~l~-~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~  317 (653)
                      ++|..++..+++.+.+|+. .+.+.+.....+.+++++..++++|..+++.+.++.....+. ... ........+....
T Consensus       239 ~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (876)
T d1qgra_         239 QNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGA  318 (876)
T ss_dssp             HHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHH
Confidence            9999999999999999886 466777778888889999999999999998765443221100 000 0001233456677


Q ss_pred             hhhhHHHHHHHhhhccCCccCCCccccHhhhHHHHHHHHHhhcCCCchhchHHHHHhhhcCcchhhHHHHHHHHHHhhcC
Q 006253          318 LPVLVPLLLETLLKQEEDQDQDEGAWNIAMAGGTCLGLVARTVGDDIVPLVMPFVEENITKQEWRQREAATYAFGSILEG  397 (653)
Q Consensus       318 l~~l~~~l~~~l~~~~ed~~~d~~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~aal~~l~~i~~~  397 (653)
                      ++.++|.+...+...++++  +++.|++|.+|..++..++...++.+++.+++++.+.+.+++|+.|++++.+++.++++
T Consensus       319 ~~~l~~~l~~~~~~~~~~~--~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~  396 (876)
T d1qgra_         319 LQYLVPILTQTLTKQDEND--DDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEG  396 (876)
T ss_dssp             HHHHHHHHHHHTTCCCSSC--CTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSS
T ss_pred             HHHHHHhhHHHHHhccccc--ccccchHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccchHHHHHHHHHHHHhhhhh
Confidence            7788888888776544433  34569999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCcchHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhhhccCCCCccccCccchHHHHHHHHHhccchhhHHHHH
Q 006253          398 PSPEKLVPLVNIALNFMLTALMQDPNNHVKDTTAWTLGRMFEFLHGSTLETPIINQGNCQQIISVLLQSMKDVPNVAEKA  477 (653)
Q Consensus       398 ~~~~~~~~~l~~l~~~ll~~l~~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~d~~~v~~~a  477 (653)
                      +....+.+++..+++.+...+ .|+++.||.+++++++++++..+..     .....++..+++.+...+.++++++.++
T Consensus       397 ~~~~~~~~~~~~~~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~-----~~~~~~~~~~~~~l~~~l~~~~~v~~~~  470 (876)
T d1qgra_         397 PEPSQLKPLVIQAMPTLIELM-KDPSVVVRDTAAWTVGRICELLPEA-----AINDVYLAPLLQCLIEGLSAEPRVASNV  470 (876)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHCGGG-----TSSTTTHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHhh-cCCccHHHHHHHHHHHHHHHHcchh-----hhhHHHhhhHHHHHHHHhcCCHHHHHHH
Confidence            766667888999999999999 9999999999999999999988642     2356789999999999998889999999


Q ss_pred             HHHHHHHHhcccCC--------CCCCCCCchhHHHHHHHHHHhccccccchhchHHHHHHHHHHHHHhcccccHHHHHHH
Q 006253          478 CGALYFLAQGFEDA--------ISPSSPLTPFFQEIVQALLTVTHREDAGESRLRTAAYETLNEVVRCSTDETAPMVMQL  549 (653)
Q Consensus       478 ~~al~~~~~~~~~~--------~~~~~~l~~~l~~i~~~L~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l  549 (653)
                      ++++..+++.....        ......+.+|++.+++.+...+...+.....++..+++++..++...+....|++..+
T Consensus       471 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  550 (876)
T d1qgra_         471 CWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKT  550 (876)
T ss_dssp             HHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhccccHhHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence            99999888653211        0234568899999999999999766543467888899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhh--cCChhHHHhHHHHHHHHHhHHHHHHHHhCCCcchhhHhhHhHHHHHHHHHHHHhc--cCcchh
Q 006253          550 VPLIMMELHQTLEAQ--KLSSDEREKQNEIQGLLCGCLQVIIQKLGSSEQTKYVFMQYADQMMGLFLRVFAI--RSATAH  625 (653)
Q Consensus       550 ~~~l~~~l~~~~~~~--~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~--~~~~~~  625 (653)
                      ++.++..+...+...  ..+..++.....++..++.++..+...++...     +.++.+.+++.+.+.+..  .+..++
T Consensus       551 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-----~~~~~~~i~~~l~~~l~~~~~~~~~~  625 (876)
T d1qgra_         551 TLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQD-----ALQISDVVMASLLRMFQSTAGSGGVQ  625 (876)
T ss_dssp             HHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHH-----HHTTHHHHHHHHHHHC-----CCHHH
T ss_pred             HHHHHHHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHHHHHHHHcchhh-----hhhhHHHHHHHHHHHHhcCCCCcchH
Confidence            999999888776532  22233443334566667778888877777653     667888999999888875  355789


Q ss_pred             hhHHHHHHHHHHHhccCCccc-hhhhcC
Q 006253          626 EEAMLAIGALAYATGLWRIRY-CLIVMG  652 (653)
Q Consensus       626 e~~~~~~~~l~~~~~~~f~~y-~~i~~~  652 (653)
                      +.++.+++.++..+|..|.|| |.++|.
T Consensus       626 ~~~l~~l~~l~~~~~~~~~~~l~~ii~~  653 (876)
T d1qgra_         626 EDALMAVSTLVEVLGGEFLKYMEAFKPF  653 (876)
T ss_dssp             HHHHHHHHHHHHHHGGGGGGGHHHHHHH
T ss_pred             HHHHHHHHHHHHHcchhhHHHHHHHHHH
Confidence            999999999999999999999 666653
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1t06a_ a.118.1.17 (A:) Hypothetical protein BC3264 {Bacillus cereus (strain ATCC 14579 / DSM 31) [TaxId: 226900]} Back     information, alignment and structure