Citrus Sinensis ID: 006257

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650---
Protein Sequence
MKAASMAFTKSYNALQCSPQALKLVPGIAIIVFATWGLGPLMRQSRNLLLRKSDNSWKKSKTHHVMTSYIQPLMLWTGAILICRALDPVVLPTEAGEVVKQRLLNFVRSLSTVLAFAYCLSSLIQQAQKFFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISHLDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIFSDADLENVPFADTIYNRGGGASNRPLLLIEPPYRINGEDKTKSQTRPSRSSGEQDGKTTPRLTPDVKADSKVSVSSKSDSKADAKIPEAPNSDTREDKNGAAAHMSDPKVADKVTVKSTSKSFPKTKSKVAEISSSEPKVLGSTSDNPTKDRKVSDSKQPKIVGQGNATQNSKIDNPSISSSGGSDKAGGLQESKQESNKLPSTQPPVSRPALEENIVLGVALEGSKRTLPIEEGMPSSQPVVKELTTANRNGNVSSTAEKEKKDGQIPSTRSATSGVSESN
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEcccccEEEEEEEEEEEEEEEEEEcccccEEEEEccccccccEEcccccccEEEEEEEEEEcccHHHHHHHHHHHHHHHHHccccccccccEEEEEccccccccEEEEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccHHHHHHHHcccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHEEEEccccEcccEEEEcccccEEEEEEEEEEEEEEEEEEEccccEEEEcccHHcEEEEEccccccccEEEEEEEEEEccHHHHHHHHHHHHHHHHHccccccccccEEEEEcccccccccEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHcccEEEcccEEEEEEccccccccccccccHcccccccccccEEEEccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHEEEEEEEccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MKAASMAFTKsynalqcspqalklvPGIAIIVFAtwglgplmrQSRNLLLrksdnswkkskthhVMTSYIQPLMLWTGAILICRaldpvvlpteaGEVVKQRLLNFVRSLSTVLAFAYCLSSLIQQAQKFFMettdsgdarnmgFQFAGKAVYSAVWVASASLFMELLGFSTqkwltaggLGTVLLTLAGREIFTNFLSSAmihatrpfvLNEWIQTKIEGYEVsgtvehvgwwsptivrgedreavhipnhkfTVNVVRNLSQKSHWRIKTHLAISHLDVHKINSIVADMRKVLAKNPQVEQQRLHRrvfldninpeNQALLILVSCFVktshheeylCVKEAILLDLLRVISHHRARLATPIRTVQkifsdadlenvpfadtiynrgggasnrplllieppyringedktksqtrpsrssgeqdgkttprltpdvkadskvsvssksdskadakipeapnsdtredkngaaahmsdpkvadkvtvkstsksfpktkskvaeisssepkvlgstsdnptkdrkvsdskqpkivgqgnatqnskidnpsisssggsdkagglqeskqesnklpstqppvsrpaleeNIVLGVAlegskrtlpieegmpssqpvVKELTTanrngnvsstaekekkdgqipstrsatsgvsesn
Flexible Loop (DISEMBL)
MKAASMAFTKSYNALQCSPQALKLVPGIAIIVFATWGLGPLMRQSRNLLLRKSdnswkksktHHVMTSYIQPLMLWTGAILICRALDPVVLPTEAGEVVKQRLLNFVRSLSTVLAFAYCLSSLIQQAQKFFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDReavhipnhkftvNVVRNLSQKSHWRIKTHLAISHLDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRarlatpirtvqkifsdadlenvpFADTIynrgggasnrpllLIEPPYringedktksqtrpsrssgeqdgkttprltpdvkadskvsvssksdskadakipeapnsdtredkngaaahmsdpkvadkvtvkstsksfpktkskvaeisssepkvlgstsdnptkdrkvsdskqpkivgqgnatqnskidnpsisssggSDKAGGLQESKQesnklpstqppvsrpaLEENIVLGVALEGSkrtlpieegmpssqpvVKELTTanrngnvsstaekekkdgqipstrsatsgvsesn
Low Complexity Region (SEG)
MKAASMAFTKSYNALQCSPQALKLVPGIAIIVFATWGLGPLMRQSRNLLLRKSDNSWKKSKTHHVMTSYIQPLMLWTGAILICRALDPVVLPTEAGEVVKQRLLNFVRSLSTVLAFAYCLSSLIQQAQKFFMETTDSGDARNMGFQFAGKavysavwvasasLFMELLGFSTQKWltagglgtvlltlagREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISHLDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIFSDADLENVPFADTIYNRGGGASNRPLLLIEPPYRINGEDKTKSQTRPSRSSGEQDGKTTPRLTPdvkadskvsvssksdskadakIPEAPNSDTREDKNGAAAHMSDPkvadkvtvkstsksfpktkskvAEISSSEPKVLGSTSDNPTKDRKVSDSKQPKIVGQGNATQNSKIDNPSISSSGGSDKAGGLQESKQESNKLPSTQPPVSRPALEENIVLGVALEGSKRTLPIEEGMPSSQPVVKELTTANRNGNVSSTAEKEKKDGQIPSTRSATSGVSESN
Disordered region (IsUnstruct)
*********KSYNALQCSPQALKLVPGIAIIVFATWGLGPLMRQSRNLLLRKSDNSWKKSKTHHVMTSYIQPLMLWTGAILICRALDPVVLPTEAGEVVKQRLLNFVRSLSTVLAFAYCLSSLIQQAQKFFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISHLDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIFSDADLENVPFADTIYNRGGGASNRPLLLIEP*****************************************************************************************************************************************************************************************IVLGVA************************************************************
Disordered Region (DISOPRED)
**AASMAFTKSYNALQCSPQALKLVPGIAIIVFATWGLGPLMRQSRNLLLRKSDNSWKKSKTHHVMTSYIQPLMLWTGAILICRALDPVVLPTEAGEVVKQRLLNFVRSLSTVLAFAYCLSSLIQQAQKFFM************FQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISHLDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTVQ*************************************************************************************************************************************************************************************************************************ENIVLGVALEGSKRTLP***************************************************
Disordered Region (DISEMBL)
********TKSYNALQCSPQALKLVPGIAIIVFATWGLGPLMRQSRNLLLRKSDN*********VMTSYIQPLMLWTGAILICRALDPVVLPTEAGEVVKQRLLNFVRSLSTVLAFAYCLSSLIQQAQKFFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISHLDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIFSDADLENVPFADTIYNRGGGASNRPLLLIEPPYRINGE**********************************************************************************************************************************TQNSKIDNPS******************************SRPALEENIVLGVALEGSKRTLPIEEGMPSSQPVVKELTTANRNG*****************************
Disordered Region (DISPRO)
MKAASMAFTKSYNALQCSPQALKLVPGIAIIVFATWGLGPLMRQSRNLLLRKSDNSWKKSKTHHVMTSYIQPLMLWTGAILICRALDPVVLPTEAGEVVKQRLLNFVRSLSTVLAFAYCLSSLIQQAQKFFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISHLDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIFSDADLENVPFADTIYNRGGGASNRPLLLIEPPYRIN***************************************************************************************************************************************************************************VSRPALEENIVLGVALEGSKRTLPIEE************************************************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKAASMAFTKSYNALQCSPQALKLVPGIAIIVFATWGLGPLMRQSRNLLLRKSDNSWKKSKTHHVMTSYIQPLMLWTGAILICRALDPVVLPTEAGEVVKQRLLNFVRSLSTVLAFAYCLSSLIQQAQKFFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISHLDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIFSDADLENVPFADTIYNRGGGASNRPLLLIEPPYRINGEDKTKSQTRPSRSSGEQDGKTTPRLTPDVKADSKVSVSSKSDSKADAKIPEAPNSDTREDKNGAAAHMSDPKVADKVTVKSTSKSFPKTKSKVAEISSSEPKVLGSTSDNPTKDRKVSDSKQPKIVGQGNATQNSKIDNPSISSSGGSDKAGGLQESKQESNKLPSTQPPVSRPALEENIVLGVALEGSKRTLPIEEGMPSSQPVVKELTTANRNGNVSSTAEKEKKDGQIPSTRSATSGVSESN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	653	2.2.26 [Sep-21-2011]
Q56X46	673	Mechanosensitive ion chan	yes	no	0.871	0.845	0.618	0.0
Q8L7W1	678	Mechanosensitive ion chan	no	no	0.865	0.833	0.563	0.0
P0AEB5	343	MscS family inner membran	N/A	no	0.310	0.591	0.303	3e-21
P0AEB6	343	MscS family inner membran	N/A	no	0.310	0.591	0.303	3e-21
O25170	623	Uncharacterized MscS fami	yes	no	0.344	0.361	0.240	3e-12
Q9ZKG7	623	Uncharacterized MscS fami	yes	no	0.316	0.332	0.245	5e-12
O66994	368	Uncharacterized MscS fami	yes	no	0.387	0.687	0.240	1e-11
Q8VZL4	497	Mechanosensitive ion chan	no	no	0.289	0.380	0.262	1e-09
Q58543	361	Large-conductance mechano	yes	no	0.214	0.387	0.266	2e-05
O07594	371	Uncharacterized MscS fami	yes	no	0.318	0.560	0.197	0.0002

>sp|Q56X46|MSL2_ARATH Mechanosensitive ion channel protein 2, chloroplastic OS=Arabidopsis thaliana GN=MSL2 PE=2 SV=1

 Score =  769 bits (1987), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/642 (61%), Positives = 470/642 (73%), Gaps = 73/642 (11%)

Query: 1   MKAASMAFTKSYNALQCSPQALKLVPGIAIIVFATWGLGPLMRQSRNLLLRKSDNSWKKS 60
           +KA ++  TKS+  +Q  P   KLVP +A++VF+ WGL P  RQ RN+LL K+DN WKKS
Sbjct: 90  VKAVTVVLTKSHGLMQQFPFVYKLVPAVALLVFSLWGLVPFARQGRNILLNKNDNGWKKS 149

Query: 61  KTHHVMTSYIQPLMLWTGAILICRALDPVVLPTEAGEVVKQRLLNFVRSLSTVLAFAYCL 120
            T+HVMTSY+QPL+LW GA+ ICRALDPVVLPTEA ++VK RLLNFVRSLSTVLAFAYCL
Sbjct: 150 GTYHVMTSYVQPLLLWLGALFICRALDPVVLPTEASKIVKDRLLNFVRSLSTVLAFAYCL 209

Query: 121 SSLIQQAQKFFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGG 180
           SSLIQQ QK F ET++  D RNMGFQFAGKA+YSAVWVA+ SLFMELLGFSTQKWLTAGG
Sbjct: 210 SSLIQQTQKLFSETSNPSDTRNMGFQFAGKALYSAVWVAAVSLFMELLGFSTQKWLTAGG 269

Query: 181 LGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVR 240
           LGTVL+TLAGREI TNFLSS MIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTI+R
Sbjct: 270 LGTVLITLAGREILTNFLSSVMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIIR 329

Query: 241 GEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISHLDVHKINSIVADMRKVLAKNPQ 300
           GEDREA+HIPNHKFTVNVVRNL+QK+HWRIKTHLAISHLDV+KIN+IVADMRKVLAKNP 
Sbjct: 330 GEDREAIHIPNHKFTVNVVRNLTQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPM 389

Query: 301 VEQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARL 360
           VEQQRLHRRVFL+N+ PENQAL IL+SCFVKTSHHEEYL VKEAILLDLLRVISHHRARL
Sbjct: 390 VEQQRLHRRVFLENVIPENQALSILISCFVKTSHHEEYLGVKEAILLDLLRVISHHRARL 449

Query: 361 ATPIRTVQKIFSDADLENVPFADTIYNRGGGASNRPLLLIEPPYRINGEDKTKSQTRPSR 420
           ATPIRT++K++++ D+EN PF +++Y  GG  S RPL+LIEP Y+INGEDK+KSQ R ++
Sbjct: 450 ATPIRTIRKMYTETDVENTPFGESMY--GGVTSRRPLMLIEPAYKINGEDKSKSQNRAAK 507

Query: 421 SSGEQDGKTTPRLTPDVKADSKVSVSSKSDSKADAKIPEAPNSDTREDKNGAAAHMSDPK 480
            + EQ+ K          ++ K   +S  D KA+ K+ E+P SDT               
Sbjct: 508 PTAEQENK---------GSNPKSKETSSPDLKANVKVGESPVSDT--------------- 543

Query: 481 VADKVTVKSTSKSFPKTKSKVAEISSSEPKVLGSTSDNPT-KDRKVSDSKQPKIVGQGNA 539
                             +KV E + ++P V+ + S  PT KD + S +++PK    G  
Sbjct: 544 ------------------NKVPEETVAKP-VIKAVSKPPTPKDTETSGTEKPKAKRSGGT 584

Query: 540 TQNSKIDNPSISSSGGSDKAGGLQESKQESNKLPSTQPPVSRPALEENIVLGVALEGSKR 599
            +++K D    S+S  S                           LEENIVLGVALEGSKR
Sbjct: 585 IKSTKTDETDSSTSSASRS------------------------TLEENIVLGVALEGSKR 620

Query: 600 TLPIEEGM--PSSQPVVKELTTANRN-GNVSSTAEKEKKDGQ 638
           TLPIEE +  P  +   KELT A R+ GN    A+KE+KD Q
Sbjct: 621 TLPIEEEIHSPPMETDAKELTGARRSGGNGPLVADKEQKDSQ 662

Mechanosensitive channel that opens in response to stretch forces in the membrane lipid bilayer (By similarity). Controls plastid size, shape, and perhaps division during normal plant development by altering ion flux in response to changes in membrane tension. Acts as a component of the chloroplast division machinery.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8L7W1|MSL3_ARATH Mechanosensitive ion channel protein 3, chloroplastic OS=Arabidopsis thaliana GN=MSL3 PE=2 SV=1

 Score =  672 bits (1734), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/609 (56%), Positives = 440/609 (72%), Gaps = 44/609 (7%)

Query: 1   MKAASMAFTKSYNALQCSPQALKLVPGIAIIVFATWGLGPLMRQSRNLLLRK-SDNSWKK 59
           +K+ ++ FT+ Y+AL  +P  +KL+P + I+ FATWGL PL+R +R  L  K +D + +K
Sbjct: 91  LKSTAVIFTRVYDALGGNPHLVKLIPAVGILAFATWGLRPLLRLARTTLFEKGNDANSQK 150

Query: 60  SKTHHVMTSYIQPLMLWTGAILICRALDPVVLPTEAGEVVKQRLLNFVRSLSTVLAFAYC 119
           S T +++ SY+QPL+LW+GAIL+CR LDP+VLP+ AG+ +KQRLL F RS+STVLAF+ C
Sbjct: 151 SSTQYIVVSYLQPLLLWSGAILLCRTLDPIVLPSSAGQAIKQRLLIFARSISTVLAFSCC 210

Query: 120 LSSLIQQAQKFFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAG 179
           LSSL+QQ QKFFMET +  D RNMGF FAGKAVY+A WVA+ASLFMELLGFSTQKWLTAG
Sbjct: 211 LSSLLQQVQKFFMETNNPADTRNMGFSFAGKAVYTAAWVAAASLFMELLGFSTQKWLTAG 270

Query: 180 GLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIV 239
           GLGTVLLTLAGREI TNFLSS MIHATRPFVLNEWIQTKI GYEVSGTVE VGWWSPTI+
Sbjct: 271 GLGTVLLTLAGREILTNFLSSIMIHATRPFVLNEWIQTKIGGYEVSGTVEQVGWWSPTII 330

Query: 240 RGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISHLDVHKINSIVADMRKVLAKNP 299
           RG+DREAVHIPNH+F+VN+VRNL+QK+HWRIKTHLAISHLDV KIN+IVADMRKVL+KNP
Sbjct: 331 RGDDREAVHIPNHQFSVNIVRNLTQKTHWRIKTHLAISHLDVSKINNIVADMRKVLSKNP 390

Query: 300 QVEQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRAR 359
           Q+EQQ++HRRVFL++I+PENQAL IL+SCFVKTS  EEYLCVKEA+LLDLL VI HH AR
Sbjct: 391 QIEQQKIHRRVFLEDIDPENQALRILISCFVKTSRFEEYLCVKEAVLLDLLTVIRHHGAR 450

Query: 360 LATPIRTVQKIFSDADLENVPFADTIYNRGGGASNRPLLLIEPPYRINGEDKTKSQTRPS 419
           LATPIRTVQ++ ++A+++   F+D ++N+   A NR  +LIEP Y+IN +D +KS   PS
Sbjct: 451 LATPIRTVQRMRNEAEVDTAGFSDIVFNQA--AMNRRYMLIEPSYKINSDDNSKS---PS 505

Query: 420 RSSGEQDGKTTPRLTPDVKADSKVSVSSKSDSKADAKIPEAPNSDTREDKNGAAAHMSDP 479
            S G++    +P  +P  K++ +              + E P+    E +N  +  +S+ 
Sbjct: 506 PSPGQK----SP--SPGQKSEER-------------DLQEEPSETKAETENNGSVPVSNA 546

Query: 480 KVAD-KVTVKSTSKSFPKTKSKVAEISSSEPKVLGSTSDNPTKDRKVSDSKQPKIVGQGN 538
           K  + K  + S S +  K  S              STSD P   +  S+ K+ + VG  +
Sbjct: 547 KKENQKAALGSNSNTGTKGSST-------------STSDQPVAQK--SEEKKKESVGDPH 591

Query: 539 ATQNSKI--DNPSISSSGGSDKAGGLQESKQESNKLPSTQPPVSRPALEENIVLGVALEG 596
             +  ++  D  +I  +  S    G +++  ES          S   LEEN+VLGVAL+G
Sbjct: 592 KAEKDEVSDDEATIEQTLKSKAKQGSEKNNGESKARDGGGSGTS-SLLEENLVLGVALDG 650

Query: 597 SKRTLPIEE 605
           SKRTLPI+E
Sbjct: 651 SKRTLPIDE 659

Mechanosensitive channel that opens in response to stretch forces in the membrane lipid bilayer. Controls plastid size, shape, and perhaps division during normal plant development by altering ion flux in response to changes in membrane tension. Acts as a component of the chloroplast division machinery.

Arabidopsis thaliana (taxid: 3702)

>sp|P0AEB5|YNAI_ECOLI MscS family inner membrane protein YnaI OS=Escherichia coli (strain K12) GN=ynaI PE=1 SV=1

 Score =  103 bits (258), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 112/211 (53%), Gaps = 8/211 (3%)

Query: 158 VASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQT 217
           V    L+ E  G S    LT GG+G + + +AG++I +NF S  M++  RPF + +WI++
Sbjct: 128 VVLVLLYGEHFGMSLSGLLTFGGIGGLAVGMAGKDILSNFFSGIMLYFDRPFSIGDWIRS 187

Query: 218 KIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAIS 277
                E  GTV  +G W  T +   D   +++PN  F+   V N  + ++ RI T + + 
Sbjct: 188 PDRNIE--GTVAEIG-WRITKITTFDNRPLYVPNSLFSSISVENPGRMTNRRITTTIGLR 244

Query: 278 HLDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINP-ENQALLILVSCFVKTSHHE 336
           + D  K+  IV  +R++L  +P ++Q    R+  L   N   + +L I+V CF KT+   
Sbjct: 245 YEDAAKVGVIVEAVREMLKNHPAIDQ----RQTLLVYFNQFADSSLNIMVYCFTKTTVWA 300

Query: 337 EYLCVKEAILLDLLRVISHHRARLATPIRTV 367
           E+L  ++ + L ++ ++  H A  A P +T+
Sbjct: 301 EWLAAQQDVYLKIIDIVQSHGADFAFPSQTL 331

Escherichia coli (strain K12) (taxid: 83333)

>sp|P0AEB6|YNAI_ECO57 MscS family inner membrane protein YnaI OS=Escherichia coli O157:H7 GN=ynaI PE=3 SV=1

 Score =  103 bits (258), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 64/211 (30%), Positives = 112/211 (53%), Gaps = 8/211 (3%)

Query: 158 VASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQT 217
           V    L+ E  G S    LT GG+G + + +AG++I +NF S  M++  RPF + +WI++
Sbjct: 128 VVLVLLYGEHFGMSLSGLLTFGGIGGLAVGMAGKDILSNFFSGIMLYFDRPFSIGDWIRS 187

Query: 218 KIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAIS 277
                E  GTV  +G W  T +   D   +++PN  F+   V N  + ++ RI T + + 
Sbjct: 188 PDRNIE--GTVAEIG-WRITKITTFDNRPLYVPNSLFSSISVENPGRMTNRRITTTIGLR 244

Query: 278 HLDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINP-ENQALLILVSCFVKTSHHE 336
           + D  K+  IV  +R++L  +P ++Q    R+  L   N   + +L I+V CF KT+   
Sbjct: 245 YEDAAKVGVIVEAVREMLKNHPAIDQ----RQTLLVYFNQFADSSLNIMVYCFTKTTVWA 300

Query: 337 EYLCVKEAILLDLLRVISHHRARLATPIRTV 367
           E+L  ++ + L ++ ++  H A  A P +T+
Sbjct: 301 EWLAAQQDVYLKIIDIVQSHGADFAFPSQTL 331

Escherichia coli O157:H7 (taxid: 83334)

>sp|O25170|Y415_HELPY Uncharacterized MscS family protein HP_0415 OS=Helicobacter pylori (strain ATCC 700392 / 26695) GN=HP_0415 PE=3 SV=1

 Score = 74.3 bits (181), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/262 (24%), Positives = 117/262 (44%), Gaps = 37/262 (14%)

Query: 132 METTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGR 191
           M T  + + R        K VY  +++ +    ++ LGF+    + + G+G + + LA +
Sbjct: 349 MATKSTHNFRKEVINLILKVVYFLIFIVALLGVLKQLGFNVSAIIASLGIGGLAVALAVK 408

Query: 192 EIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPN 251
           ++  NF +S ++     F   +WI       EV GTV  +G    TI R  D   + +PN
Sbjct: 409 DVLANFFASVILLLDNSFSQGDWIVCG----EVEGTVVEMGLRRTTI-RAFDNALLSVPN 463

Query: 252 HKFTVNVVRNLS-QKSHWRIKTHLAISHLDVHK-INSIVADMRKVLAKNPQV-------- 301
            +     +RN S +K   RIK  + +++      +   V D++++L  +P++        
Sbjct: 464 SELAGKPIRNWSRRKVGRRIKMEIGLTYSSSQSALQLCVKDIKEMLENHPKIANGADSAL 523

Query: 302 ----EQQRLHRR----------------VFLDNINPENQALLILVSCFVKTSHHEEYLCV 341
               + + + ++                VFLD     + ++ ILV CF KT   EE+L V
Sbjct: 524 QNVSDYRYMFKKDIVSIDDFLGYKNNLFVFLDQF--ADSSINILVYCFSKTVVWEEWLEV 581

Query: 342 KEAILLDLLRVISHHRARLATP 363
           KE ++L ++ ++  H    A P
Sbjct: 582 KEDVMLKIMGIVEKHHLSFAFP 603

Helicobacter pylori (strain ATCC 700392 / 26695) (taxid: 85962)

>sp|Q9ZKG7|Y415_HELPJ Uncharacterized MscS family protein jhp_0969 OS=Helicobacter pylori (strain J99) GN=jhp_0969 PE=3 SV=1

 Score = 73.6 bits (179), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 112/244 (45%), Gaps = 37/244 (15%)

Query: 150 KAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPF 209
           K VY  +++ +    ++ LGF+    + + G+G + + LA +++  NF +S ++     F
Sbjct: 367 KVVYFLIFIVALLGVLKQLGFNVSAIIASLGIGGLAVALAVKDVLANFFASVILLLDNSF 426

Query: 210 VLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLS-QKSHW 268
              +WI       EV GTV  +G    TI R  D   + +PN +     +RN S +K   
Sbjct: 427 SQGDWIVCG----EVEGTVVEMGLRRTTI-RAFDNALLSVPNSELAGKPIRNWSRRKVGR 481

Query: 269 RIKTHLAISHLDVHK-INSIVADMRKVLAKNPQV------------EQQRLHRR------ 309
           RIK  + +++      +   V D++++L  +P++            + + + ++      
Sbjct: 482 RIKMEIGLTYSSSQSALQLCVKDIKEMLENHPKIANGADSALQNASDYRYMFKKDIVSID 541

Query: 310 ----------VFLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRAR 359
                     VFLD     + ++ ILV CF KT   EE+L VKE ++L ++ ++  H   
Sbjct: 542 DFLGYKNNLFVFLDQF--ADSSINILVYCFSKTVVWEEWLEVKEDVMLKIMGIVEKHHLS 599

Query: 360 LATP 363
            A P
Sbjct: 600 FAFP 603

Helicobacter pylori (strain J99) (taxid: 85963)

>sp|O66994|Y812_AQUAE Uncharacterized MscS family protein aq_812 OS=Aquifex aeolicus (strain VF5) GN=aq_812 PE=3 SV=1

 Score = 72.0 bits (175), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 134/266 (50%), Gaps = 13/266 (4%)

Query: 106 FVRSLSTVL---AFAYCLSSLIQQAQKFFMETTDSGDARNMGFQFAGKAVYSAVWVASAS 162
           F+++ S ++   A    L+    +  +FF++      A  +G  F  K + + V V   +
Sbjct: 104 FLKTFSLLILGWAIIRFLNLFHNKIVEFFVKVGGKDFAEEVG-DFILKILKAFVVVIVGA 162

Query: 163 LFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGY 222
             ++  G +    L + GL  + ++LA ++ F N LS  +I   +P  + E ++ K    
Sbjct: 163 SLLQEWGVNIGAILASVGLLGLAVSLAAKDTFENILSGLIILLDKPVKVGETVKVK---- 218

Query: 223 EVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISH-LDV 281
           +  G+VE +G  S T +R  D+  V IPN     N V N ++++  R++ ++ + +    
Sbjct: 219 DFMGSVEDIGLRS-TKIRTFDKSLVTIPNRDIVNNHVENFTRRNKRRVRFYIGVVYSTKR 277

Query: 282 HKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLCV 341
            ++ +I+ ++R++L ++P V +      V+ +N    + +L IL+  +  T+ +EEYL +
Sbjct: 278 EQLENILKEIRELLKEHPGVAKDE-KFYVYFENYG--DSSLNILIQYYANTNDYEEYLKI 334

Query: 342 KEAILLDLLRVISHHRARLATPIRTV 367
            E I L ++ ++  + +  A P R+V
Sbjct: 335 IEDINLKIMEIVEKNGSSFAFPSRSV 360

Aquifex aeolicus (strain VF5) (taxid: 224324)

>sp|Q8VZL4|MSL1_ARATH Mechanosensitive ion channel protein 1, mitochondrial OS=Arabidopsis thaliana GN=MSL1 PE=2 SV=1

 Score = 65.1 bits (157), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 92/198 (46%), Gaps = 9/198 (4%)

Query: 166 ELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVS 225
           E  G + Q  LT GG+G V    A R+I  N LS   +  +RPF + +     I+   V 
Sbjct: 301 EACGVAVQSILTVGGVGGVATAFAARDILGNVLSGLSMQFSRPFSMGD----TIKAGSVE 356

Query: 226 GTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWR-IKTHLAISHLDVHKI 284
           G V  +G  + +++  E +  V +PN  F+  V+ N S ++ WR I + + +   D+  I
Sbjct: 357 GQVIEMGLTTTSLLNAE-KFPVLVPNSLFSSQVIVNKS-RAQWRAIASKIPLQIDDLDMI 414

Query: 285 NSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLCVKEA 344
             I  +++++L  N +V   +     +L  +      L I   C +     EE    ++ 
Sbjct: 415 PQISNEIKEMLRSNTKVFLGKEAPHCYLSRVEKSFAELTI--GCNLIRMGKEELYNTQQE 472

Query: 345 ILLDLLRVISHHRARLAT 362
           +LL+ +++I  H   L T
Sbjct: 473 VLLEAVKIIKKHGVSLGT 490

Mechanosensitive channel that opens in response to stretch forces in the membrane lipid bilayer.

Arabidopsis thaliana (taxid: 3702)

>sp|Q58543|MSMJL_METJA Large-conductance mechanosensitive channel MscMJLR OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1143 PE=1 SV=1

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 77/154 (50%), Gaps = 14/154 (9%)

Query: 188 LAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAV 247
           LA + + +N ++  +I   +PF +  WI T   G   SG VE +G  S T +R  D   +
Sbjct: 181 LASQNLVSNLIAGLIILTDKPFKIGNWI-TFSGG---SGIVEDIGIRS-TKIRATDNSII 235

Query: 248 HIPNHKFTVNVVRNLSQKSHWRIKTHLAISH-LDVHKINSIVADMRKVLAKNPQVEQQ-- 304
            +PN K    +++N+  K+ W++ T + +++   V KI      ++ +L ++P VE +  
Sbjct: 236 VVPNSKLIDEIIQNVPSKNKWKVSTTIGVTYNTPVEKIRKAEEIIKNILLEHPNVEDEPI 295

Query: 305 RLHRRVFLDNINPENQALLILVSCFVKTSHHEEY 338
            ++ + F D       +L I V  ++K S +  Y
Sbjct: 296 TVYFKEFGD------WSLNIQVVYYIKNSRYNGY 323

Large-conductance mechanosensitive channel that opens in response to stretch forces in the membrane lipid bilayer. Selective for cations. Rectifies with voltage.

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

>sp|O07594|YHDY_BACSU Uncharacterized MscS family protein YhdY OS=Bacillus subtilis (strain 168) GN=yhdY PE=3 SV=1

 Score = 48.1 bits (113), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/218 (19%), Positives = 95/218 (43%), Gaps = 10/218 (4%)

Query: 147 FAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHAT 206
           F  K +   +   S S+  +   +    ++   GLG +   LA ++  +NF    +I   
Sbjct: 136 FLSKLLRFVIIALSVSVIAQEFNYDVNGFVAGLGLGGLAFALAAKDTISNFFGGIIIITE 195

Query: 207 RPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKS 266
           +PF + +W++T      V+G+VE + + S T  R      V +PN   ++  + N ++ +
Sbjct: 196 KPFTIGDWVETS----TVTGSVEDITFRS-TRFRTAQGALVTVPNSTLSMEAITNWTRMT 250

Query: 267 HWRIKTHLAISHLD-VHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLIL 325
             +I   + +S+   +  +   +  +R +L ++  V+ + +   V  D        L   
Sbjct: 251 KRQITFSIHVSYATPIENLERSIHSLRTMLLEHEGVDNEII--MVNFDTFADSYYNLFF- 307

Query: 326 VSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATP 363
            + + KT+   E L ++E I   ++ ++     + A P
Sbjct: 308 -NFYTKTTVWAENLNIREDINYKIIEILGAEGVQFAYP 344

May play a role in resistance to osmotic downshock.

Bacillus subtilis (strain 168) (taxid: 224308)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	653
255586028	654	conserved hypothetical protein [Ricinus	0.977	0.975	0.740	0.0
224094969	576	predicted protein [Populus trichocarpa]	0.871	0.987	0.707	0.0
255545964	705	conserved hypothetical protein [Ricinus	0.934	0.865	0.639	0.0
356529683	719	PREDICTED: uncharacterized protein LOC10	0.900	0.817	0.661	0.0
356497700	734	PREDICTED: uncharacterized protein LOC10	0.909	0.809	0.660	0.0
225459093	709	PREDICTED: uncharacterized protein LOC10	0.928	0.854	0.626	0.0
449469783	704	PREDICTED: mechanosensitive ion channel	0.935	0.867	0.625	0.0
224067078	628	predicted protein [Populus trichocarpa]	0.885	0.920	0.633	0.0
356508025	681	PREDICTED: uncharacterized protein LOC10	0.889	0.853	0.621	0.0
356515716	682	PREDICTED: uncharacterized protein LOC10	0.889	0.851	0.629	0.0

>gi|255586028|ref|XP_002533682.1| conserved hypothetical protein [Ricinus communis] gi|223526417|gb|EEF28698.1| conserved hypothetical protein [Ricinus communis]

 Score =  988 bits (2553), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/655 (74%), Positives = 544/655 (83%), Gaps = 17/655 (2%)

Query: 6   MAFTKSYNALQCSPQALKLVPGIAIIVFATWGLGPLMRQSRNLLLRKSDNSWKKSKTHHV 65
           MA  +SY+ALQ SP  LKL P + +I+FA WGLGPLMRQSRNLLL K+D++WKKS T++V
Sbjct: 1   MALKRSYSALQGSPIMLKLAPAVGVIIFAIWGLGPLMRQSRNLLLNKNDSNWKKSGTYYV 60

Query: 66  MTSYIQPLMLWTGAILICRALDPVVLPTEAGEVVKQRLLNFVRSLSTVLAFAYCLSSLIQ 125
           MTSY+QPL+LWTGA LICR LDP++LPTEA +VVKQRLLNFVRSLSTVLAFAYCLSS+IQ
Sbjct: 61  MTSYVQPLLLWTGATLICRVLDPLILPTEASQVVKQRLLNFVRSLSTVLAFAYCLSSVIQ 120

Query: 126 QAQKFFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVL 185
           Q QKF +E+ +  D RNMGFQFAGKAVYSAVWVA+ SLFMELLGFSTQKWLTAGGLGTVL
Sbjct: 121 QVQKFLIESNEPSDTRNMGFQFAGKAVYSAVWVAAVSLFMELLGFSTQKWLTAGGLGTVL 180

Query: 186 LTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDRE 245
           LTLAGREIFTNFLSSAMIHATRPFV+NEWIQTKIEGYEVSGTVEHVGWWSPTI+RGEDRE
Sbjct: 181 LTLAGREIFTNFLSSAMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDRE 240

Query: 246 AVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISHLDVHKINSIVADMRKVLAKNPQVEQQR 305
           AVHIPNHKFTVNVVRNLSQK+HWRIKTHLAISHLDVHKI++IVADMRKVLAKNPQVEQQR
Sbjct: 241 AVHIPNHKFTVNVVRNLSQKTHWRIKTHLAISHLDVHKIHNIVADMRKVLAKNPQVEQQR 300

Query: 306 LHRRVFLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIR 365
           LHRRVFL+NINPENQALLIL+SCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIR
Sbjct: 301 LHRRVFLENINPENQALLILISCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIR 360

Query: 366 TVQKIFSDADLENVPFADTIYNRGGGASNRPLLLIEPPYRINGEDKTKSQTRPSRSSGEQ 425
           TVQKI+SDADLEN+PFAD+IYNRGG ASNRPLLLIEP YRING+DK KSQTR  R +G+Q
Sbjct: 361 TVQKIYSDADLENIPFADSIYNRGGSASNRPLLLIEPSYRINGDDKAKSQTRQGRGAGDQ 420

Query: 426 DGKTTPRLTPDVKADSKVSVSSKSDS------KADAKIPEAPNSDTREDKNGAAAHMSDP 479
           + K   R TPD KA     V  KSDS      K+DAK+ E PNSD +E   GA   MSDP
Sbjct: 421 ENKAASRSTPDTKA----GVGPKSDSKTKEAPKSDAKVGETPNSDAKEHIKGATTSMSDP 476

Query: 480 KVADKVTVKSTSKSFPKTKSKVAEISSSEPKVLGSTSDNPTKDRKVSDSKQPKIVGQGNA 539
           KV DK++VKS+  S PKT S +AE SS E K   S SDN  +++K+ DSKQ K    GN 
Sbjct: 477 KVGDKMSVKSSPNSVPKT-SNLAESSSPESKAAASVSDNVIQNKKIPDSKQSKSANPGNG 535

Query: 540 TQNSKIDNPSIS-SSGGSDKAGGLQE---SKQESNKLPSTQPPVSRPALEENIVLGVALE 595
            QN+++DNPS+S S  G++KA GLQE   SKQ + +  + Q   SRP+LEENIVLGVALE
Sbjct: 536 RQNTQLDNPSVSLSDAGTEKASGLQESPQSKQGAERKSNGQSSTSRPSLEENIVLGVALE 595

Query: 596 GSKRTLPIEEGMP--SSQPVVKELTTANRNGNVSSTAEKEKKDGQIPSTRSATSG 648
           GSKRTLPIEE M    +Q  VKE+  A RNGN S T E + KDGQIP   +ATSG
Sbjct: 596 GSKRTLPIEEDMTPHPTQGEVKEMAAAGRNGNASPTGETDGKDGQIPLPPNATSG 650

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224094969|ref|XP_002310309.1| predicted protein [Populus trichocarpa] gi|222853212|gb|EEE90759.1| predicted protein [Populus trichocarpa]

 Score =  836 bits (2160), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/609 (70%), Positives = 473/609 (77%), Gaps = 40/609 (6%)

Query: 42  MRQSRNLLLRKSDNSWKKSKTHHVMTSYIQPLMLWTGAILICRALDPVVLPTEAGEVVKQ 101
           MRQSRNLL  KSDNSWKKS T++VM SYIQPLMLWTGAIL+CRALDPVVLPTEA EVVKQ
Sbjct: 1   MRQSRNLLFHKSDNSWKKSGTYYVMASYIQPLMLWTGAILVCRALDPVVLPTEASEVVKQ 60

Query: 102 RLLNFVRSLSTVLAFAYCLSSLIQQAQKFFMETTDSGDARNMGFQFAGKAVYSAVWVASA 161
           RLLNFVRSLSTVLAFAYCLSS+IQQAQKFFM +    DAR MGFQFAG+AVYSAVWVA+ 
Sbjct: 61  RLLNFVRSLSTVLAFAYCLSSMIQQAQKFFMVSPQPSDARTMGFQFAGRAVYSAVWVAAV 120

Query: 162 SLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEG 221
           SLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFV+NEWIQTKIEG
Sbjct: 121 SLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVVNEWIQTKIEG 180

Query: 222 YEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISHLDV 281
           YEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQK+HWRIKTHLAISHLD 
Sbjct: 181 YEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKTHWRIKTHLAISHLDA 240

Query: 282 HKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLCV 341
           HKIN+IVADMRKVLAKNPQVEQQRLHRR+FLDNINPENQALLILVSCFVKTSHHEEYLCV
Sbjct: 241 HKINNIVADMRKVLAKNPQVEQQRLHRRIFLDNINPENQALLILVSCFVKTSHHEEYLCV 300

Query: 342 KEAILLDLLRVISHHRARLATPIRTVQKIF---SDADLENVPFADTIYNRGGGASNRPLL 398
           KEAIL+DLLRVISHHRARLATPIRT+QKI+   SD D+ENVPF D+IYN GG AS RPLL
Sbjct: 301 KEAILMDLLRVISHHRARLATPIRTIQKIYSDTSDTDIENVPFTDSIYNHGGVASKRPLL 360

Query: 399 LIEPPYRINGEDKTKSQTRPSRSSGEQDGKTTPRLTPDVKADSKVSVSSKSDSKADAKIP 458
           LIEP YRINGEDK KSQ R  R +GE+D  T      + K+DS+   + KSDSK DA   
Sbjct: 361 LIEPSYRINGEDKAKSQARSGRVTGEKDTGT------NTKSDSRAKETPKSDSKGDANSG 414

Query: 459 EAPNSDTREDKNGAAAHMSDPKVADKVTVKSTSKSFPKTKSKVAEISSSEPKVLGSTSDN 518
           E PNSD +         +S  +V DK+TVKS   S  KT S   E S    K  GS SDN
Sbjct: 415 ETPNSDAKVHTKSTTVSVSHSRVDDKMTVKSPPTSVLKTNSNATEASGLGSKAAGSVSDN 474

Query: 519 PTKDRKVSDSKQPKIVGQGNATQNSKIDNPSISSSGGSDKAGGLQESKQESNKLPSTQPP 578
             K++  SD+K             SK  +P+               SKQE  K   +QP 
Sbjct: 475 LNKNKTTSDAK-------------SKTTSPA--------------NSKQE--KRSVSQPS 505

Query: 579 VSRPALEENIVLGVALEGSKRTLPIEEGMPS--SQPVVKELTTANRNGNVSSTAEKEKKD 636
            SR ALEENIVLGVALEGSKRTLPI+E + S  + P  KE+  A++NG  S T  K+++D
Sbjct: 506 SSRSALEENIVLGVALEGSKRTLPIDEDIASHPTPPEEKEMAAASQNGTGSPTTVKDRRD 565

Query: 637 GQIPSTRSA 645
           G  P+  S 
Sbjct: 566 GPPPTPTSG 574

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545964|ref|XP_002514042.1| conserved hypothetical protein [Ricinus communis] gi|223547128|gb|EEF48625.1| conserved hypothetical protein [Ricinus communis]

 Score =  826 bits (2134), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/647 (63%), Positives = 499/647 (77%), Gaps = 37/647 (5%)

Query: 1   MKAASMAFTKSYNALQCSPQALKLVPGIAIIVFATWGLGPLMRQSRNLLLRKSDNSWKKS 60
           +K+A++  T+SYNAL  SP  LKL+P I+II FA+WGLGPL+R  R + L  SDN+WKKS
Sbjct: 92  VKSAAVVLTRSYNALSGSPLVLKLIPAISIIAFASWGLGPLLRLGRIIFLHGSDNNWKKS 151

Query: 61  KTHHVMTSYIQPLMLWTGAILICRALDPVVLPTEAGEVVKQRLLNFVRSLSTVLAFAYCL 120
            TH+V+TSY+QPL+LWTGAIL+CRALDPVVL +EA + VKQRLLNFVRSLSTV+AFAYCL
Sbjct: 152 STHYVLTSYLQPLLLWTGAILVCRALDPVVLQSEANQAVKQRLLNFVRSLSTVMAFAYCL 211

Query: 121 SSLIQQAQKFFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGG 180
           SSLIQQAQKFF E  DS DARNMGF FAGKAVYSAVW+A+ SLFMELLGFSTQKWLTAGG
Sbjct: 212 SSLIQQAQKFFTEMNDSSDARNMGFSFAGKAVYSAVWIAAVSLFMELLGFSTQKWLTAGG 271

Query: 181 LGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVR 240
           LGTVL+TLAGREI TNFLSS MIHATRPFV+NEWIQTKIEGYEVSGTVEHVGWWSPT++R
Sbjct: 272 LGTVLITLAGREILTNFLSSVMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTVIR 331

Query: 241 GEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISHLDVHKINSIVADMRKVLAKNPQ 300
           G+DREAVHIPNHKFTVNVVRNLSQK+HWRIKTHLAISHLDV+K+N+IVADMRKVLAKNPQ
Sbjct: 332 GDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTHLAISHLDVNKVNNIVADMRKVLAKNPQ 391

Query: 301 VEQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARL 360
           VEQQRLHRRVFLDNINPENQAL+ILVSCFVKTSH EEYLCVKEA+LLDLLRV+SHHRARL
Sbjct: 392 VEQQRLHRRVFLDNINPENQALMILVSCFVKTSHFEEYLCVKEAVLLDLLRVLSHHRARL 451

Query: 361 ATPIRTVQKIFSDADLENVPFADTIYNRGGGASNRPLLLIEPPYRINGEDKTKSQTRPSR 420
           ATPIRTVQKI+++ADL+NVPFADTI+ R   A+NRPLLLIEP Y+ING+DKTK+ T+   
Sbjct: 452 ATPIRTVQKIYNEADLDNVPFADTIFARSRAATNRPLLLIEPSYKINGDDKTKASTQSVS 511

Query: 421 SSGEQDGKTTPRLTPDVKADSKVSVSSKSDSKADAKIPEAPNSDTREDKNGAAAHMSDPK 480
           ++ E+DG        +V+A S +         ADAK   +P  + + DK  AA  +SD  
Sbjct: 512 TNEEKDG--------NVEAASTL---------ADAKAGSSPIVELKRDKV-AATTISDSS 553

Query: 481 VADKVTVKSTSKSFPKTKSKVAEISSSEPKVLGSTSDNPTKDRKVSDSKQPKIVGQGNAT 540
           +  + +  + S S         ++  SE ++  S   N       +++++P    +G+  
Sbjct: 554 ITPEGSATTASDS---------QLGKSEHEI--SVPKN-------AETQEPSGSMEGSRN 595

Query: 541 QNSKIDNPSISSSGGSDKAGGLQESKQESNKLPSTQPPVSRPALEENIVLGVALEGSKRT 600
           +   +++  ++    + +        QE+ +   T PPVSRP LEENIVLGVALEGSKRT
Sbjct: 596 EKMGLNSEDLTLGRSTSEEYSAISQAQEAVERSVTPPPVSRPPLEENIVLGVALEGSKRT 655

Query: 601 LPIEEGM-PSSQPVVKELTTANRNGNVSSTAEKEKKDGQIPSTRSAT 646
           LPIE+ M PS      +   A+RNG  S TA K+KKD Q+P+  SA+
Sbjct: 656 LPIEDEMDPSPFSSESKELAASRNGGGSLTAGKDKKDSQMPTVPSAS 702

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529683|ref|XP_003533418.1| PREDICTED: uncharacterized protein LOC100796304 [Glycine max]

 Score =  816 bits (2109), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/617 (66%), Positives = 487/617 (78%), Gaps = 29/617 (4%)

Query: 1   MKAASMAFTKSYNALQCSPQALKLVPGIAIIVFATWGLGPLMRQSRNLLLRKSDNSWKKS 60
           +K A+    +S N LQ SP  +KL+P + +I+FA WG+GPL+ Q+R LL ++SD+SWK+S
Sbjct: 89  VKVAATVLARSCNVLQNSPTIVKLIPAVGVIIFAVWGVGPLLFQTRKLLFQRSDSSWKRS 148

Query: 61  KTHHVMTSYIQPLMLWTGAILICRALDPVVLPTEAGEVVKQRLLNFVRSLSTVLAFAYCL 120
            T++++TSY+QPL+LWTGAILICRAL+P++LP+E  +VVK+RLLNFVRSLSTVLAFAYCL
Sbjct: 149 TTYYIITSYLQPLLLWTGAILICRALEPLILPSETSQVVKERLLNFVRSLSTVLAFAYCL 208

Query: 121 SSLIQQAQKFFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGG 180
           SS+IQQAQKF  E+TD+ + RNMGFQFAGKAVYSAVW+A+ SLFMELLGFSTQKW+TAGG
Sbjct: 209 SSVIQQAQKFLAESTDASETRNMGFQFAGKAVYSAVWIAAFSLFMELLGFSTQKWVTAGG 268

Query: 181 LGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVR 240
           LGTVLLTLAGREIFTNFLSS MIHATRPFV+NEWIQTKIEGYEVSGTVEHVGWWSPTI+R
Sbjct: 269 LGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIIR 328

Query: 241 GEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISHLDVHKINSIVADMRKVLAKNPQ 300
           GEDREAVHIPNHKFTVNVVRNLSQK+HWRIKTHLAISHLDV+KIN+IVADMRKVLAKNPQ
Sbjct: 329 GEDREAVHIPNHKFTVNVVRNLSQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQ 388

Query: 301 VEQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARL 360
           VEQQRLHRRVFLDNINPENQALLILVSCFVKTSH EEYLCVKEA+LLDLLRVI HHRARL
Sbjct: 389 VEQQRLHRRVFLDNINPENQALLILVSCFVKTSHFEEYLCVKEAVLLDLLRVIGHHRARL 448

Query: 361 ATPIRTVQKIFSDADLENVPFADTIYNRGGG-ASNRPLLLIEPPYRINGEDKTKSQTRPS 419
           ATP+RT+QKI+SDADLEN+PFAD+ + RG G   NRPLL+IEP Y+ING+DK   ++R +
Sbjct: 449 ATPVRTLQKIYSDADLENIPFADSTFGRGAGTVPNRPLLVIEPSYKINGDDK---KSRSA 505

Query: 420 RSSGEQDGKTTPRLTPDVKADSKVSVSSKSDSKADAKIPEAPNSDTREDKNGAAAHMSDP 479
           R + +QD KT  R   D + D+KV V+  SD+  ++K    PNSD   +         DP
Sbjct: 506 RPAVDQDNKTATRTKVDTEGDNKV-VTPNSDANGNSKTVVTPNSDANGNSKTVVTPKPDP 564

Query: 480 KVADKVTVKSTSKSFPKTKSKVAEISSSEPKVLGSTSDNPTKDRKVSDSKQPKIVGQGNA 539
           +V +   +KS S    +   +V E S S+ KV G   DN  +  K  D KQ K+    + 
Sbjct: 565 EVGENKPLKSDSS---RENVEVPE-SPSKSKVTGLVVDNSAQ--KDVDVKQAKV----HT 614

Query: 540 TQNSKIDNPSI--------SSSGGSDKAGGLQES---KQESNKLPSTQPPVSRPALEENI 588
           T+N+K   P+I        SS+  +DK GG   +   KQ+  K P+ QP  SR  LEENI
Sbjct: 615 TKNTK---PNIDSDNVVSSSSTNNADKTGGFNTNMPMKQQGEKKPAAQPHASRTVLEENI 671

Query: 589 VLGVALEGSKRTLPIEE 605
           VLGVALEGSKRTLPI+E
Sbjct: 672 VLGVALEGSKRTLPIDE 688

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497700|ref|XP_003517697.1| PREDICTED: uncharacterized protein LOC100789444 [Glycine max]

 Score =  808 bits (2087), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/609 (66%), Positives = 478/609 (78%), Gaps = 15/609 (2%)

Query: 1   MKAASMAFTKSYNALQCSPQALKLVPGIAIIVFATWGLGPLMRQSRNLLLRKSDNSWKKS 60
           +K A+    +S N LQ SP  +KL+P + +I+FA WG+GPL+ Q+R LL ++SD+SWKKS
Sbjct: 106 VKVAATVLARSCNILQNSPIIVKLIPAVGVIIFAIWGVGPLLFQTRKLLFQRSDSSWKKS 165

Query: 61  KTHHVMTSYIQPLMLWTGAILICRALDPVVLPTEAGEVVKQRLLNFVRSLSTVLAFAYCL 120
            T++++ SY+QPL+LWTGAILICRAL+P++LP+E  ++VK+RLLNFVRSLSTVLAFAYCL
Sbjct: 166 TTYYIVASYLQPLLLWTGAILICRALEPLILPSETSQIVKERLLNFVRSLSTVLAFAYCL 225

Query: 121 SSLIQQAQKFFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGG 180
           SS+IQQ QKF  E+TD+ +ARNMGFQFAGKAVYSAVW+A+ SLFMELLGFSTQKW+TAGG
Sbjct: 226 SSVIQQVQKFLAESTDASEARNMGFQFAGKAVYSAVWIAAFSLFMELLGFSTQKWVTAGG 285

Query: 181 LGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVR 240
           LGTVLLTLAGREIFTNFLSS MIHATRPFV+NEWIQTKIEGYEVSGTVEHVGWWSPTI+R
Sbjct: 286 LGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIIR 345

Query: 241 GEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISHLDVHKINSIVADMRKVLAKNPQ 300
           GEDREAVHIPNHKFTVNVVRNLSQK+HWRIKTHLAISHLDV+KIN+IVADMRKVLAKNPQ
Sbjct: 346 GEDREAVHIPNHKFTVNVVRNLSQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQ 405

Query: 301 VEQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARL 360
           VEQQRLHRRVFLDNINPENQALLILVSCFVKTSH EEYLCVKEAILLDLLRVI HHRARL
Sbjct: 406 VEQQRLHRRVFLDNINPENQALLILVSCFVKTSHFEEYLCVKEAILLDLLRVIGHHRARL 465

Query: 361 ATPIRTVQKIFSDADLENVPFADTIYNRGGG-ASNRPLLLIEPPYRINGEDKTKSQTRPS 419
           ATP+RT+QKI+SDADLEN+PFAD+ +  G G   +RPLL+IEP Y+ING+DK   ++R +
Sbjct: 466 ATPVRTLQKIYSDADLENIPFADSTFGHGAGTVPHRPLLVIEPSYKINGDDK---KSRAA 522

Query: 420 RSSGEQDGKTTPRLTPDVKADSKVSVSSKSDSKADAKIPEAPNSDTREDKNGAAAHMSDP 479
           R + +QD KT  +   D K  + V+  ++ D++ D K+   PNSD   +         DP
Sbjct: 523 RPAVDQDNKTATQTKVDTKTHN-VARGTQDDTEGDNKV-LTPNSDANGNSKTVVTPKPDP 580

Query: 480 KVADKVTVKSTSKSFPKTKSKVAEISSSEPKVLGSTSDNPTKDRKVSDSKQPKIVGQGNA 539
           +V +   +KS S    K   +V E S S+ KV G   DN  +  K  D KQ K+    N 
Sbjct: 581 EVGENKPLKSDSN---KENVEVPE-SPSKSKVTGLVVDNSAQ--KDVDVKQSKVQITKNI 634

Query: 540 TQNSKIDNPSISSSGGSDKAGGLQES---KQESNKLPSTQPPVSRPALEENIVLGVALEG 596
             N   DN   SS+  +DK GG   +   KQ+  K P+ Q   SR  LEENIVLGVALEG
Sbjct: 635 KPNIDSDNVVSSSTNNADKIGGFNTNMPMKQQGEKKPAAQAHASRTVLEENIVLGVALEG 694

Query: 597 SKRTLPIEE 605
           SKRTLPI+E
Sbjct: 695 SKRTLPIDE 703

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459093|ref|XP_002283836.1| PREDICTED: uncharacterized protein LOC100259028 [Vitis vinifera]

 Score =  798 bits (2061), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/648 (62%), Positives = 484/648 (74%), Gaps = 42/648 (6%)

Query: 1   MKAASMAFTKSYNALQCSPQALKLVPGIAIIVFATWGLGPLMRQSRNLLLRKSDNSWKKS 60
           +K+A++  T+S NAL+  P  L+LVP ++I+ FA WGLGPLMR SRNL L K+D+SWKKS
Sbjct: 90  LKSAALVLTRSCNALRGRPLVLQLVPAVSIVAFAAWGLGPLMRLSRNLFLNKTDSSWKKS 149

Query: 61  KTHHVMTSYIQPLMLWTGAILICRALDPVVLPTEAGEVVKQRLLNFVRSLSTVLAFAYCL 120
            T++V+T Y+QPL+LW GA+LICRALDP++LP++  + VKQRLL F+RSLSTVLA AYCL
Sbjct: 150 STYYVLTYYLQPLLLWIGAMLICRALDPIILPSKESQAVKQRLLIFIRSLSTVLASAYCL 209

Query: 121 SSLIQQAQKFFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGG 180
           SSLIQQ Q FFME  DS DAR MGFQFAGKAVY+A+WVA+ SLFMELLGFSTQKWLTAGG
Sbjct: 210 SSLIQQVQNFFMENNDSSDARTMGFQFAGKAVYTAIWVAAVSLFMELLGFSTQKWLTAGG 269

Query: 181 LGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVR 240
           LGTVLLTLAGREIFTNFLSS MIHATRPFV+NEWIQTKIEGYEVSGTVEHVGWWSPTI+R
Sbjct: 270 LGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIIR 329

Query: 241 GEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISHLDVHKINSIVADMRKVLAKNPQ 300
           G+DREAVHIPNHKFTVNVVRNLSQK+HWRIKTHLAISHLDV+KIN+IVADMRKVLAKNPQ
Sbjct: 330 GDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQ 389

Query: 301 VEQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARL 360
           VEQQRLHRRVFLD I+PENQALLILVSCFVKT   EEYLCVKEAILLDLLRVISHH+ARL
Sbjct: 390 VEQQRLHRRVFLDYIDPENQALLILVSCFVKTPRFEEYLCVKEAILLDLLRVISHHQARL 449

Query: 361 ATPIRTVQKIFSDAD--LENVPFADTIYNRGGGASNRPLLLIEPPYRINGEDKTKSQTRP 418
           ATPIRTVQK +S AD  +EN+PFAD I+ R   A+NRPLLLIEP Y++NG+DKTK+ T  
Sbjct: 450 ATPIRTVQKEYSMADMEMENIPFADPIFTRSSAAANRPLLLIEPSYKMNGDDKTKASTGS 509

Query: 419 SRSSGEQDGKTTPRLTPDVKADSKVSVSSKSDSKADAKIPEAPNSDTREDKNGAAAHMSD 478
           +  + E+D       T + K D+K   SS  DS  D  +     S++  +   +A  +SD
Sbjct: 510 ACQNEEKDANIDASSTSESKPDAKAGASSILDSTTDDNVAATSISNSSTNSKVSATSISD 569

Query: 479 PKVADKVTVKSTSKSFPKTKSKVAEISSSEPKVLGSTSDNPTKDRKVSDSKQPKIVGQGN 538
           PK+ + VT  ST  ++ + +S+ +                     KV +   P     G+
Sbjct: 570 PKIQNMVTDGSTQNNYEEQQSEASM-------------------EKVREDINPG----GS 606

Query: 539 ATQNSKIDNPSISSSGGSDKAGGLQE----SKQESNKLPSTQPPVSRPALEENIVLGVAL 594
           A +   ++ P      G+ KA GL      +KQ+ N+       ++ PALEENIVLGVAL
Sbjct: 607 AFEKPSLNFP----ESGAGKADGLPSATPLAKQDGNR-----ASIATPALEENIVLGVAL 657

Query: 595 EGSKRTLPIEEGMPSSQPV---VKELTTANRNGNVSSTAEKEKKDGQI 639
           EGSKRTLPIEE      P     KEL  A +NGNVS+   K+KK+GQI
Sbjct: 658 EGSKRTLPIEEEEMVVSPSGAESKEL-AACQNGNVSAPNGKDKKEGQI 704

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469783|ref|XP_004152598.1| PREDICTED: mechanosensitive ion channel protein 3, chloroplastic-like [Cucumis sativus]

 Score =  795 bits (2054), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/647 (62%), Positives = 488/647 (75%), Gaps = 36/647 (5%)

Query: 1   MKAASMAFTKSYNALQCSPQALKLVPGIAIIVFATWGLGPLMRQSRNLLLRKSDNSWKKS 60
           +K+A++  T+S +AL+ +P  LKL+P   +I FA WG+GPLMR  R L L + D SWKKS
Sbjct: 90  LKSAAVVLTRSCDALRSNPLLLKLIPAACVIAFAAWGIGPLMRLGRILFLHEPDGSWKKS 149

Query: 61  KTHHVMTSYIQPLMLWTGAILICRALDPVVLPTEAGEVVKQRLLNFVRSLSTVLAFAYCL 120
            T++V TSY+QPL+LWTGA LICRALDPVVLP+ A + VKQRLLNFVRSLSTVLAFAYCL
Sbjct: 150 STYYVTTSYVQPLLLWTGATLICRALDPVVLPSVASQAVKQRLLNFVRSLSTVLAFAYCL 209

Query: 121 SSLIQQAQKFFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGG 180
           SSLIQQ QKF  E+ D GDARNMGF FAGKAVY+AVW+A+ SLFMELLGFSTQKWLTAGG
Sbjct: 210 SSLIQQVQKFAYESNDPGDARNMGFDFAGKAVYTAVWIAALSLFMELLGFSTQKWLTAGG 269

Query: 181 LGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVR 240
           LGTVLLTLAGREIFTNFLSS MIHATRPFV+NEWIQTKI+GYEVSGTVEHVGWWSPTI+R
Sbjct: 270 LGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIDGYEVSGTVEHVGWWSPTIIR 329

Query: 241 GEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISHLDVHKINSIVADMRKVLAKNPQ 300
           G+DREAVHIPNHKFTV++VRNL+QK+HWRIKTHLAISHLDV+KIN IVADMRKVL+KNPQ
Sbjct: 330 GDDREAVHIPNHKFTVSIVRNLTQKTHWRIKTHLAISHLDVNKINYIVADMRKVLSKNPQ 389

Query: 301 VEQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARL 360
           VEQQRLHRR+FLDN+NPENQAL+I+VSCFVKTS  EEYLCVKEAILLDLLRVISHHRARL
Sbjct: 390 VEQQRLHRRIFLDNVNPENQALMIMVSCFVKTSRFEEYLCVKEAILLDLLRVISHHRARL 449

Query: 361 ATPIRTVQKIFSDADLENVPFADTIYNRGGGASNRPLLLIEPPYRINGEDKTKSQTRPSR 420
           ATPIRTVQKI+ +ADLENVPF++T+Y+R  GA+NRPLLLIEP Y++NG+DKTK  +RP+R
Sbjct: 450 ATPIRTVQKIYGEADLENVPFSETMYSR-SGATNRPLLLIEPSYKVNGDDKTKVSSRPTR 508

Query: 421 SSGEQ-DGKTTPRLTPDVKADSKVSVSSKSDSKADAKIPEAPNSDTREDKNGAAAHMSDP 479
           SS E+ + K     T   KA      +S  D KAD K P +P        +G     S P
Sbjct: 509 SSTEEKEAKQEAVSTSGTKAPDTTGSTSNLDMKADDKKPISP--------SGITPKPSAP 560

Query: 480 KVADKVTVKSTSKSFPKTKSKVAEISSSEPKVLGSTSDNPTKDRKVSDSKQPKIVGQGNA 539
            ++   + +S+++  P T +   EI   +  +LG  S +      +  +  PK     ++
Sbjct: 561 ILSTSSSEQSSAEK-PVTSN---EIKGEKKDILGLNSKD-----NMPRATLPKRSPSASS 611

Query: 540 TQNSKIDNPSISSSGGSDKAGGLQESKQESNKLPSTQPPVSRPALEENIVLGVALEGSKR 599
             + K D PS SS           ++KQ+  K  ++ P V+RP LEENIVLGVALEGSKR
Sbjct: 612 PGSEKADIPSTSS-----------QNKQDGEKTSASPPSVARPPLEENIVLGVALEGSKR 660

Query: 600 TLPIEEGMPSSQPVVKELTTANRNGNVSSTAEKEKKDGQIPSTRSAT 646
           TLPI+E + S +       +  RNG+      K+ KDGQ+P+   AT
Sbjct: 661 TLPIDEDLDSKE------NSTQRNGSEFPPNSKDLKDGQMPAVPGAT 701

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067078|ref|XP_002302344.1| predicted protein [Populus trichocarpa] gi|222844070|gb|EEE81617.1| predicted protein [Populus trichocarpa]

 Score =  793 bits (2047), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/642 (63%), Positives = 484/642 (75%), Gaps = 64/642 (9%)

Query: 1   MKAASMAFTKSYNALQCSPQALKLVPGIAIIVFATWGLGPLMRQSRNLLLRKSDNSWKKS 60
           +K+A++AFT+SY+AL+ S   LKL+P I II FA WGLGPL+   R + L KSDNSWKKS
Sbjct: 44  LKSAALAFTRSYDALRGSNLVLKLIPAIGIITFAAWGLGPLIWLGRTIFLHKSDNSWKKS 103

Query: 61  KTHHVMTSYIQPLMLWTGAILICRALDPVVLPTEAGEVVKQRLLNFVRSLSTVLAFAYCL 120
            TH+V+TSY+QPL+LWTGA LICRALDPVVL +E  + VKQRLLNFVRSLSTV+AFAYCL
Sbjct: 104 STHYVVTSYLQPLLLWTGATLICRALDPVVLQSEVSQAVKQRLLNFVRSLSTVVAFAYCL 163

Query: 121 SSLIQQAQKFFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGG 180
           SSLIQQAQKF  ET +S DARNMGF FAGKAVY+AVW+A+ SLFMELLGFSTQKWLTAGG
Sbjct: 164 SSLIQQAQKFITETNESSDARNMGFSFAGKAVYTAVWIAAVSLFMELLGFSTQKWLTAGG 223

Query: 181 LGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVR 240
           LGTVLLTLAGREIFTNFLSS MIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTI+R
Sbjct: 224 LGTVLLTLAGREIFTNFLSSIMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIIR 283

Query: 241 GEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISHLDVHKINSIVADMRKVLAKNPQ 300
           G+DREAVHIPNHKF+V++VRNLSQK+HWRIKTHLAISHLDV KIN+IVADMRKVLAKNPQ
Sbjct: 284 GDDREAVHIPNHKFSVSIVRNLSQKTHWRIKTHLAISHLDVKKINNIVADMRKVLAKNPQ 343

Query: 301 VEQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARL 360
           +EQQRLHRRVFLDNINPENQAL+ILVSCFVKTSH EEYLCVKEA+LLDLLRVISHHRARL
Sbjct: 344 IEQQRLHRRVFLDNINPENQALMILVSCFVKTSHFEEYLCVKEAVLLDLLRVISHHRARL 403

Query: 361 ATPIRTVQKIFSDADLENVPFADTIYNRGGGASNRPLLLIEPPYRINGEDKTKSQTRPSR 420
           ATPIRTVQKI+S+ADLENVPF+D+I+ R G  +N PLLLIEP Y+IN EDK K+  R  R
Sbjct: 404 ATPIRTVQKIYSEADLENVPFSDSIFTRSGATANHPLLLIEPSYKINSEDKVKASNRSLR 463

Query: 421 SSGEQDGKTTPRLTPDVKADSKVSVSSKSDSKADAKIPEAPNSDTREDKNGAAAHMSDPK 480
           ++ E+D K    L               S+ KADAK    P  D++ DK           
Sbjct: 464 ANEEKDAKVEAALV--------------SELKADAKAGSMPVVDSKRDK----------- 498

Query: 481 VADKVTVKSTSKSFPKTKSKVAEISSSEPKVLGSTSDNPTKDRKVSDSKQPKIVGQGNAT 540
                 V + S S   T SKV+++S+S+P+++ +                     +G++ 
Sbjct: 499 ------VVAKSTSNSSTNSKVSDVSASDPQLITTP--------------------EGSSV 532

Query: 541 QNSKIDNPSISSSGGSDKAGGLQESKQESNKLPSTQPPVSRPALEENIVLGVALEGSKRT 600
            N++       S G   ++  + +SKQ+  +  ++ P ++RP LEENIVLGVALEGSKRT
Sbjct: 533 SNTE-------SVGERTESPDISQSKQDIERSVAS-PLMTRPLLEENIVLGVALEGSKRT 584

Query: 601 LP---IEEGMPSSQ-PVVKELTTANRNGNVSSTAEKEKKDGQ 638
           LP   IEE M SS  P+  +   A++N   S +  K+KKD +
Sbjct: 585 LPIEEIEEEMDSSPFPLESKELAASQNAGQSPSV-KDKKDSR 625

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508025|ref|XP_003522763.1| PREDICTED: uncharacterized protein LOC100796022 [Glycine max]

 Score =  790 bits (2039), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/639 (62%), Positives = 472/639 (73%), Gaps = 58/639 (9%)

Query: 1   MKAASMAFTKSYNALQCSPQALKLVPGIAIIVFATWGLGPLMRQSRNLLLRKSDNSWKKS 60
           MK+AS+  T+SY+ALQ +P  L+L+P I II FA  GL PL+R SR L L+ +D+SWKKS
Sbjct: 90  MKSASVILTRSYDALQGNPTFLQLIPAIGIIAFAVCGLEPLLRLSRVLFLQSTDSSWKKS 149

Query: 61  KTHHVMTSYIQPLMLWTGAILICRALDPVVLPTEAGEVVKQRLLNFVRSLSTVLAFAYCL 120
            + ++MTSY QPL+LWTGA+L+CRALDP+VLP+E+ +VVKQRLLNFVRSLSTV++FAYCL
Sbjct: 150 SSRYIMTSYFQPLLLWTGAMLVCRALDPLVLPSESSQVVKQRLLNFVRSLSTVISFAYCL 209

Query: 121 SSLIQQAQKFFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGG 180
           SSLIQQAQKFF+E  DS  ARNMG  FAGKAVY+AVWVA+ SLFMELLGFSTQKW+TAGG
Sbjct: 210 SSLIQQAQKFFLEGNDSSGARNMGLDFAGKAVYTAVWVAAVSLFMELLGFSTQKWVTAGG 269

Query: 181 LGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVR 240
           LGTVLLTLAGREIFTNFLSS MIHATRPF++NEWIQTKIEGYEVSGTVEHVGWWSPTI+R
Sbjct: 270 LGTVLLTLAGREIFTNFLSSIMIHATRPFIVNEWIQTKIEGYEVSGTVEHVGWWSPTIIR 329

Query: 241 GEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISHLDVHKINSIVADMRKVLAKNPQ 300
           G+DREAVHIPNHKFTVNVVRNLSQKSHWRIK+++AISHLDV+KIN+IVADMRKVL+KNPQ
Sbjct: 330 GDDREAVHIPNHKFTVNVVRNLSQKSHWRIKSYIAISHLDVNKINNIVADMRKVLSKNPQ 389

Query: 301 VEQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARL 360
           VEQQ+LHRRVFL+N+NPENQAL+IL+SCFVKTSH EEYLCVKEAILLDLLRV+SHHRARL
Sbjct: 390 VEQQKLHRRVFLENVNPENQALMILISCFVKTSHFEEYLCVKEAILLDLLRVVSHHRARL 449

Query: 361 ATPIRTVQKIFSDADLENVPFADTIYNRGGGASNRPLLLIEPPYRINGEDKTKSQTRPSR 420
           ATPIRTVQKI+S+AD EN+PF DTI+ R   A NRP LLIEP Y++NGEDKTK  TR +R
Sbjct: 450 ATPIRTVQKIYSEADSENIPFGDTIFTRSS-AGNRPFLLIEPLYKVNGEDKTKPSTRSTR 508

Query: 421 SSGEQDGKTTPRLTPDVKADSKVSVSSKSDSKADAKIPEAPNSDTREDKNGAAAHMSDPK 480
           +S E+D                             +I E   SDT+ED+N AA   S P 
Sbjct: 509 ASEEKD----------------------------FRIDETMASDTKEDENFAATLTSSPD 540

Query: 481 VADKVTVKSTSKSFPKTKSKVAEISSSEPKVLGSTSDNPTKDRKVSDSKQPKIVGQGNAT 540
           V  K   KS S++ PK                        K+  V   K P +    N  
Sbjct: 541 VNSKDKSKSLSEAQPK------------------------KENAVDAGKGPTVPVSKNLV 576

Query: 541 QNSKIDNPSISSSGGSDKAGGLQESKQESNKLPSTQPPVSRPALEENIVLGVALEGSKRT 600
           Q++  +   ++S   +       +  +E + +P +     RP+LEENI+LGVA+EGSKRT
Sbjct: 577 QSAAPETSPVTSHEINSATSSQSKQDEEKSSVPLSS---VRPSLEENILLGVAIEGSKRT 633

Query: 601 LPIEEGM-PSSQPVVKELTTANRNGNVSSTAEKEKKDGQ 638
           LPIEE M PS  P   +     RNG     A K+KKDGQ
Sbjct: 634 LPIEEEMTPSPMPAESQEFAVQRNGG-GPPASKDKKDGQ 671

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515716|ref|XP_003526544.1| PREDICTED: uncharacterized protein LOC100777815 [Glycine max]

 Score =  782 bits (2020), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/640 (62%), Positives = 475/640 (74%), Gaps = 59/640 (9%)

Query: 1   MKAASMAFTKSYNALQCSPQALKLVPGIAIIVFATWGLGPLMRQSRNLLLRKS-DNSWKK 59
           MK+AS+  T+SY+ALQ +P  L+L+P I II FA  GL PL+R SR L L+ S D SWKK
Sbjct: 90  MKSASVILTRSYDALQGNPIFLQLIPAIGIIAFAVCGLEPLLRLSRVLFLQVSTDISWKK 149

Query: 60  SKTHHVMTSYIQPLMLWTGAILICRALDPVVLPTEAGEVVKQRLLNFVRSLSTVLAFAYC 119
           S +  +MTSYIQPL+LWTGA+L+CRALDP+VLP+E+ +VVKQRLLNFVRSLSTV++FAYC
Sbjct: 150 SSSQSIMTSYIQPLLLWTGAMLVCRALDPLVLPSESSQVVKQRLLNFVRSLSTVISFAYC 209

Query: 120 LSSLIQQAQKFFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAG 179
           LSSLIQQAQKFF+E  DS  ARNMG  FAGKAVY+AVWVA+ SLFMELLGFSTQKW+TAG
Sbjct: 210 LSSLIQQAQKFFLEGNDSSGARNMGLDFAGKAVYTAVWVAAVSLFMELLGFSTQKWVTAG 269

Query: 180 GLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIV 239
           GLGTVLLTLAGREIFTNFLSS MIHATRPF++NEWIQTKIEGYEVSGTVEHVGWWSPTI+
Sbjct: 270 GLGTVLLTLAGREIFTNFLSSIMIHATRPFIVNEWIQTKIEGYEVSGTVEHVGWWSPTII 329

Query: 240 RGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISHLDVHKINSIVADMRKVLAKNP 299
           RG+DREAVHIPNHKFTVNVVRNLSQKSHWRIK+++AISHLDV+K+N+IVADMRKVL+KNP
Sbjct: 330 RGDDREAVHIPNHKFTVNVVRNLSQKSHWRIKSYIAISHLDVNKVNNIVADMRKVLSKNP 389

Query: 300 QVEQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRAR 359
           QVEQQ+LHRRVFL+N+NPENQAL+IL+SCFVKTSH EEYLCVKEAILLDLLRV+SHHRAR
Sbjct: 390 QVEQQKLHRRVFLENVNPENQALMILISCFVKTSHFEEYLCVKEAILLDLLRVVSHHRAR 449

Query: 360 LATPIRTVQKIFSDADLENVPFADTIYNRGGGASNRPLLLIEPPYRINGEDKTKSQTRPS 419
           LATPIRTVQKI+S+AD EN+PF DTI+ R   A+NRP LLIEPPY++NGEDK K+ TR +
Sbjct: 450 LATPIRTVQKIYSEADSENIPFGDTIFTRSR-AANRPFLLIEPPYKVNGEDKVKASTRST 508

Query: 420 RSSGEQDGKTTPRLTPDVKADSKVSVSSKSDSKADAKIPEAPNSDTREDKNGAAAHMSDP 479
           R++ E+D                            +KI E   SDT+ED+N  A   S P
Sbjct: 509 RANEEKD----------------------------SKIDETMASDTKEDENFTATSTSSP 540

Query: 480 KVADKVTVKSTSKSFPKTKSKVAEISSSEPKVLGSTSDNPTKDRKVSDSKQPKIVGQGNA 539
            V  K   KS S + PK ++ V                +  K   V  SK    + Q   
Sbjct: 541 DVISKDKSKSLSDAQPKKENAV----------------DAGKGTTVPVSKN---LVQSAV 581

Query: 540 TQNSKIDNPSISSSGGSDKAGGLQESKQESNKLPSTQPPVSRPALEENIVLGVALEGSKR 599
            + S      I+S+  S       +SKQ+  K   + P V RP+LEENI+LGVA+EGSKR
Sbjct: 582 PEASLATTQEITSATSS-------QSKQDEEKSSVSLPSV-RPSLEENILLGVAIEGSKR 633

Query: 600 TLPIE-EGMPSSQPVVKELTTANRNGNVSSTAEKEKKDGQ 638
           TLPIE E  PS  P   +     RNG     A K+KKDGQ
Sbjct: 634 TLPIEGEMTPSPMPAESQEFAVQRNGG-GPPASKDKKDGQ 672

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	653
TAIR|locus:2142414	673	MSL2 "MSCS-like 2" [Arabidopsi	0.658	0.638	0.711	2.9e-185
TAIR|locus:2015297	678	MSL3 "MSCS-like 3" [Arabidopsi	0.643	0.619	0.633	6.9e-158
UNIPROTKB|P0AEB5	343	ynaI "mechanosensitive channel	0.260	0.495	0.292	1e-15
UNIPROTKB|Q83CN5	383	CBU_1075 "Mechanosensitive ion	0.261	0.446	0.242	6.4e-13
TIGR_CMR|CBU_1075	383	CBU_1075 "membrane protein, pu	0.261	0.446	0.242	6.4e-13
TAIR|locus:2126061	497	AT4G00290 [Arabidopsis thalian	0.289	0.380	0.227	8e-05

TAIR|locus:2142414 MSL2 "MSCS-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1632 (579.6 bits), Expect = 2.9e-185, Sum P(2) = 2.9e-185
 Identities = 308/433 (71%), Positives = 355/433 (81%)

Query:     1 MKAASMAFTKSYNALQCSPQALKLVPGIAIIVFATWGLGPLMRQSRNLLLRKSDNSWKKS 60
             +KA ++  TKS+  +Q  P   KLVP +A++VF+ WGL P  RQ RN+LL K+DN WKKS
Sbjct:    90 VKAVTVVLTKSHGLMQQFPFVYKLVPAVALLVFSLWGLVPFARQGRNILLNKNDNGWKKS 149

Query:    61 KTHHVMTSYIQPLMLWTGAILICRALDPVVLPTEAGEVVKQRLLNFVRSLSTVLAFAYCL 120
              T+HVMTSY+QPL+LW GA+ ICRALDPVVLPTEA ++VK RLLNFVRSLSTVLAFAYCL
Sbjct:   150 GTYHVMTSYVQPLLLWLGALFICRALDPVVLPTEASKIVKDRLLNFVRSLSTVLAFAYCL 209

Query:   121 SSLIQQAQKFFMETTDSGDARNMGFQFAGKXXXXXXXXXXXXLFMELLGFSTQKWXXXXX 180
             SSLIQQ QK F ET++  D RNMGFQFAGK            LFMELLGFSTQKW     
Sbjct:   210 SSLIQQTQKLFSETSNPSDTRNMGFQFAGKALYSAVWVAAVSLFMELLGFSTQKWLTAGG 269

Query:   181 XXXXXXXXXXREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVR 240
                       REI TNFLSS MIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTI+R
Sbjct:   270 LGTVLITLAGREILTNFLSSVMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIIR 329

Query:   241 GEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISHLDVHKINSIVADMRKVLAKNPQ 300
             GEDREA+HIPNHKFTVNVVRNL+QK+HWRIKTHLAISHLDV+KIN+IVADMRKVLAKNP 
Sbjct:   330 GEDREAIHIPNHKFTVNVVRNLTQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPM 389

Query:   301 VEQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARL 360
             VEQQRLHRRVFL+N+ PENQAL IL+SCFVKTSHHEEYL VKEAILLDLLRVISHHRARL
Sbjct:   390 VEQQRLHRRVFLENVIPENQALSILISCFVKTSHHEEYLGVKEAILLDLLRVISHHRARL 449

Query:   361 ATPIRTVQKIFSDADLENVPFADTIYNRGGGASNRPLLLIEPPYRINGEDKTKSQTRPSR 420
             ATPIRT++K++++ D+EN PF +++Y  GG  S RPL+LIEP Y+INGEDK+KSQ R ++
Sbjct:   450 ATPIRTIRKMYTETDVENTPFGESMY--GGVTSRRPLMLIEPAYKINGEDKSKSQNRAAK 507

Query:   421 SSGEQDGK-TTPR 432
              + EQ+ K + P+
Sbjct:   508 PTAEQENKGSNPK 520

GO:0005886 "plasma membrane" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005216 "ion channel activity" evidence=IGI

GO:0009526 "plastid envelope" evidence=IDA

GO:0009657 "plastid organization" evidence=IGI

GO:0009507 "chloroplast" evidence=IDA

GO:0010020 "chloroplast fission" evidence=IGI

TAIR|locus:2015297 MSL3 "MSCS-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1433 (509.5 bits), Expect = 6.9e-158, Sum P(2) = 6.9e-158
 Identities = 270/426 (63%), Positives = 335/426 (78%)

Query:     1 MKAASMAFTKSYNALQCSPQALKLVPGIAIIVFATWGLGPLMRQSRNLLLRK-SDNSWKK 59
             +K+ ++ FT+ Y+AL  +P  +KL+P + I+ FATWGL PL+R +R  L  K +D + +K
Sbjct:    91 LKSTAVIFTRVYDALGGNPHLVKLIPAVGILAFATWGLRPLLRLARTTLFEKGNDANSQK 150

Query:    60 SKTHHVMTSYIQPLMLWTGAILICRALDPVVLPTEAGEVVKQRLLNFVRSLSTVLAFAYC 119
             S T +++ SY+QPL+LW+GAIL+CR LDP+VLP+ AG+ +KQRLL F RS+STVLAF+ C
Sbjct:   151 SSTQYIVVSYLQPLLLWSGAILLCRTLDPIVLPSSAGQAIKQRLLIFARSISTVLAFSCC 210

Query:   120 LSSLIQQAQKFFMETTDSGDARNMGFQFAGKXXXXXXXXXXXXLFMELLGFSTQKWXXXX 179
             LSSL+QQ QKFFMET +  D RNMGF FAGK            LFMELLGFSTQKW    
Sbjct:   211 LSSLLQQVQKFFMETNNPADTRNMGFSFAGKAVYTAAWVAAASLFMELLGFSTQKWLTAG 270

Query:   180 XXXXXXXXXXXREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIV 239
                        REI TNFLSS MIHATRPFVLNEWIQTKI GYEVSGTVE VGWWSPTI+
Sbjct:   271 GLGTVLLTLAGREILTNFLSSIMIHATRPFVLNEWIQTKIGGYEVSGTVEQVGWWSPTII 330

Query:   240 RGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISHLDVHKINSIVADMRKVLAKNP 299
             RG+DREAVHIPNH+F+VN+VRNL+QK+HWRIKTHLAISHLDV KIN+IVADMRKVL+KNP
Sbjct:   331 RGDDREAVHIPNHQFSVNIVRNLTQKTHWRIKTHLAISHLDVSKINNIVADMRKVLSKNP 390

Query:   300 QVEQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRAR 359
             Q+EQQ++HRRVFL++I+PENQAL IL+SCFVKTS  EEYLCVKEA+LLDLL VI HH AR
Sbjct:   391 QIEQQKIHRRVFLEDIDPENQALRILISCFVKTSRFEEYLCVKEAVLLDLLTVIRHHGAR 450

Query:   360 LATPIRTVQKIFSDADLENVPFADTIYNRGGGASNRPLLLIEPPYRINGEDKTKSQTRPS 419
             LATPIRTVQ++ ++A+++   F+D ++N+   A NR  +LIEP Y+IN +D +KS   PS
Sbjct:   451 LATPIRTVQRMRNEAEVDTAGFSDIVFNQA--AMNRRYMLIEPSYKINSDDNSKS---PS 505

Query:   420 RSSGEQ 425
              S G++
Sbjct:   506 PSPGQK 511

GO:0005886 "plasma membrane" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005216 "ion channel activity" evidence=IGI

GO:0006970 "response to osmotic stress" evidence=IGI

GO:0009526 "plastid envelope" evidence=IDA

GO:0009657 "plastid organization" evidence=IGI

GO:0010020 "chloroplast fission" evidence=IGI

GO:0009694 "jasmonic acid metabolic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

UNIPROTKB|P0AEB5 ynaI "mechanosensitive channel YnaI monomer" [Escherichia coli K-12 (taxid:83333)]

 Score = 221 (82.9 bits), Expect = 1.0e-15, P = 1.0e-15
 Identities = 52/178 (29%), Positives = 96/178 (53%)

Query:   191 REIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIP 250
             ++I +NF S  M++  RPF + +WI++     E  GTV  +GW    I   ++R  +++P
Sbjct:   161 KDILSNFFSGIMLYFDRPFSIGDWIRSPDRNIE--GTVAEIGWRITKITTFDNRP-LYVP 217

Query:   251 NHKFTVNVVRNLSQKSHWRIKTHLAISHLDVHKINSIVADMRKVLAKNPQVEQQRLHRRV 310
             N  F+   V N  + ++ RI T + + + D  K+  IV  +R++L  +P ++Q    R+ 
Sbjct:   218 NSLFSSISVENPGRMTNRRITTTIGLRYEDAAKVGVIVEAVREMLKNHPAIDQ----RQT 273

Query:   311 FLDNINP-ENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTV 367
              L   N   + +L I+V CF KT+   E+L  ++ + L ++ ++  H A  A P +T+
Sbjct:   274 LLVYFNQFADSSLNIMVYCFTKTTVWAEWLAAQQDVYLKIIDIVQSHGADFAFPSQTL 331

GO:0055085 "transmembrane transport" evidence=IEA

GO:0071470 "cellular response to osmotic stress" evidence=IGI

GO:0005887 "integral to plasma membrane" evidence=RCA

GO:0005886 "plasma membrane" evidence=IEA

GO:0008381 "mechanically-gated ion channel activity" evidence=IGI;ISS

GO:0006811 "ion transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|Q83CN5 CBU_1075 "Mechanosensitive ion channel" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 199 (75.1 bits), Expect = 6.4e-13, P = 6.4e-13
 Identities = 43/177 (24%), Positives = 98/177 (55%)

Query:   191 REIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIP 250
             ++   NF    MI+  RPF + +WI++     ++ GTVE++GW   T +R  D+ ++++P
Sbjct:   178 KDTLGNFFGGMMIYWDRPFSVGDWIRSPDR--QIEGTVENIGW-RLTRIRTFDKRSLYVP 234

Query:   251 NHKFTVNVVRNLSQKSHWRIKTHLAISHLDVHKINSIVADMRKVLAKNPQVEQQRLHRRV 310
             N   +   V N S+ ++ R+K  + + + D  KI  +   + ++L  +P+++   + + +
Sbjct:   235 NGILSNVAVENPSRMTNRRLKIIVGVRYSDASKIMDLAKAIEEMLRNDPEID---VTQTL 291

Query:   311 FLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTV 367
             F++       +L ++V  F KT+   ++  +++ I+L ++ +I+ + A  A P +T+
Sbjct:   292 FVNLFEFAPSSLNMMVYTFTKTTEWVKFQAIQQKIMLKIINIITTYGAECAFPTQTI 348

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CBU_1075 CBU_1075 "membrane protein, putative" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 199 (75.1 bits), Expect = 6.4e-13, P = 6.4e-13
 Identities = 43/177 (24%), Positives = 98/177 (55%)

Query:   191 REIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIP 250
             ++   NF    MI+  RPF + +WI++     ++ GTVE++GW   T +R  D+ ++++P
Sbjct:   178 KDTLGNFFGGMMIYWDRPFSVGDWIRSPDR--QIEGTVENIGW-RLTRIRTFDKRSLYVP 234

Query:   251 NHKFTVNVVRNLSQKSHWRIKTHLAISHLDVHKINSIVADMRKVLAKNPQVEQQRLHRRV 310
             N   +   V N S+ ++ R+K  + + + D  KI  +   + ++L  +P+++   + + +
Sbjct:   235 NGILSNVAVENPSRMTNRRLKIIVGVRYSDASKIMDLAKAIEEMLRNDPEID---VTQTL 291

Query:   311 FLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTV 367
             F++       +L ++V  F KT+   ++  +++ I+L ++ +I+ + A  A P +T+
Sbjct:   292 FVNLFEFAPSSLNMMVYTFTKTTEWVKFQAIQQKIMLKIINIITTYGAECAFPTQTI 348

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2126061 AT4G00290 [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 8.0e-05, P = 8.0e-05
 Identities = 45/198 (22%), Positives = 86/198 (43%)

Query:   166 ELLGFSTQKWXXXXXXXXXXXXXXXREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVS 225
             E  G + Q                 R+I  N LS   +  +RPF + + I+    G  V 
Sbjct:   301 EACGVAVQSILTVGGVGGVATAFAARDILGNVLSGLSMQFSRPFSMGDTIKA---G-SVE 356

Query:   226 GTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWR-IKTHLAISHLDVHKI 284
             G V  +G  + +++  E +  V +PN  F+  V+ N S ++ WR I + + +   D+  I
Sbjct:   357 GQVIEMGLTTTSLLNAE-KFPVLVPNSLFSSQVIVNKS-RAQWRAIASKIPLQIDDLDMI 414

Query:   285 NSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLCVKEA 344
               I  +++++L  N +V   +     +L  +  E     + + C +     EE    ++ 
Sbjct:   415 PQISNEIKEMLRSNTKVFLGKEAPHCYLSRV--EKSFAELTIGCNLIRMGKEELYNTQQE 472

Query:   345 ILLDLLRVISHHRARLAT 362
             +LL+ +++I  H   L T
Sbjct:   473 VLLEAVKIIKKHGVSLGT 490


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.129   0.372    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      653       583   0.00082  120 3  11 23  0.44    34
                                                     36  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  625 (66 KB)
  Total size of DFA:  309 KB (2159 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  51.91u 0.13s 52.04t   Elapsed:  00:00:03
  Total cpu time:  51.91u 0.13s 52.04t   Elapsed:  00:00:03
  Start:  Tue May 21 08:37:51 2013   End:  Tue May 21 08:37:54 2013

GO:0005886 "plasma membrane" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q56X46	MSL2_ARATH	No assigned EC number	0.6183	0.8713	0.8454	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	653
pfam00924	202	pfam00924, MS_channel, Mechanosensitive ion channe	1e-19
COG0668	316	COG0668, MscS, Small-conductance mechanosensitive	7e-17

>gnl|CDD|201506 pfam00924, MS_channel, Mechanosensitive ion channel

 Score = 87.3 bits (217), Expect = 1e-19
 Identities = 47/194 (24%), Positives = 88/194 (45%), Gaps = 10/194 (5%)

Query: 155 AVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEW 214
            + V    + +  LG +    L   G   + L  A +++ +N +S  +I   +PF + +W
Sbjct: 5   LIIVVGILIVLSYLGVNVSALLAGLGALGLALGFALQDLVSNLVSGIIILFEKPFKIGDW 64

Query: 215 IQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHL 274
           I+      +V GTVE +G  S T +R  D   V IPN K   + + NLS+    R++  +
Sbjct: 65  IEIG----DVEGTVEDIGIRS-TTIRTFDGRLVTIPNSKILTSNIINLSRSPTRRVEVSI 119

Query: 275 AISH-LDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVKTS 333
            +++  D  K+  ++  +++   ++P V  +     V        + +L   V  +VKT 
Sbjct: 120 GVAYSSDPKKLEKVIEILKEAAYEHPLV-LKDPEPPVVFGEF--GDSSLNFEVRVWVKTL 176

Query: 334 HHEEYLCVKEAILL 347
              EY  V+  + L
Sbjct: 177 -PGEYFNVRSELNL 189

Two members of this protein family from M. jannaschii have been functionally characterized. Both proteins form mechanosensitive (MS) ion channels upon reconstitution into liposomes and functional examination by the patch-clamp technique. Therefore this family are likely to also be MS channel proteins. Length = 202

>gnl|CDD|223740 COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]

 Score = 81.5 bits (201), Expect = 7e-17
 Identities = 60/305 (19%), Positives = 120/305 (39%), Gaps = 23/305 (7%)

Query: 70  IQPLMLWTGAILICRALDPVVLPTEAGEVVKQRLLNFVRSLSTVLAFAYCLSSLIQQAQK 129
           I  ++L    I + + L  ++L    G      LL  +R L  +L        LI    K
Sbjct: 7   INLIILELLLIFLLKLLLRLLLYVLNG-----LLLILLRKLLLLLLILLIAFLLIAYLVK 61

Query: 130 FFMETTDSGDARNMGF-------QFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLG 182
             + +     A             F    +   + V +  + + +LG      L   G  
Sbjct: 62  LLLRSLLLLKALIRRLARETTLSVFLSNLLRILILVVALLIVLSVLGVQVTSLLAGLGAL 121

Query: 183 TVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGE 242
            + + LA +++ +N ++   +   RPF + +WI+    G  V GTVE +G  S T +R  
Sbjct: 122 GLAIGLALQDLLSNLIAGIFLLLERPFKVGDWIEI---GSGVEGTVEDIGLRS-TTIRTL 177

Query: 243 DREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISHLDVHKINSIVADMRKVLAKNPQVE 302
           D   V IPN K     V N S++   R++  + +++     +   +  +++VL + P+V 
Sbjct: 178 DGRIVTIPNSKLFTANVVNYSREPGRRVEVKVGVAYDS--DLEKALKILKEVLEELPEVL 235

Query: 303 QQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLAT 362
           +      + +  +   +  + I V  +      E+   V+  + L +   +      +  
Sbjct: 236 KIEPEPVIGVSELG--DSGINIRVRFWTNP---EDLWSVQRELNLRIKEALEEAGIEIPY 290

Query: 363 PIRTV 367
           P ++V
Sbjct: 291 PQQSV 295

Length = 316

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	653
PRK10334	286	mechanosensitive channel MscS; Provisional	100.0
PRK11465	741	putative mechanosensitive channel protein; Provisi	100.0
PRK11281	1113	hypothetical protein; Provisional	100.0
PRK10929	1109	putative mechanosensitive channel protein; Provisi	100.0
COG3264	835	Small-conductance mechanosensitive channel [Cell e	100.0
PF00924	206	MS_channel: Mechanosensitive ion channel; InterPro	100.0
COG0668	316	MscS Small-conductance mechanosensitive channel [C	100.0
KOG4629	714	consensus Predicted mechanosensitive ion channel [	99.77
PRK10263	1355	DNA translocase FtsK; Provisional	90.42
COG0053	304	MMT1 Predicted Co/Zn/Cd cation transporters [Inorg	86.1
PRK12438	991	hypothetical protein; Provisional	83.76
PF03699	774	UPF0182: Uncharacterised protein family (UPF0182);	83.04
PRK00068	970	hypothetical protein; Validated	82.96
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	80.18

>PRK10334 mechanosensitive channel MscS; Provisional

Probab=100.00  E-value=1.3e-43  Score=370.65  Aligned_cols=250  Identities=18%  Similarity=0.247  Sum_probs=222.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHH
Q 006257          103 LLNFVRSLSTVLAFAYCLSSLIQQAQKFFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLG  182 (653)
Q Consensus       103 ll~~l~siliIl~i~~~l~~li~~l~~~l~~~~~~~~~~~~~l~~i~~li~v~i~ii~iiviL~~lGv~i~~lLa~lGi~  182 (653)
                      .++++.+++ +++++|++.+++..+.+.+..+..   .+.....++.+++++++++++++++|..+|++++++++++|++
T Consensus        28 ~~~i~~al~-il~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~l~~lGi~~~~l~a~~G~~  103 (286)
T PRK10334         28 AVNIVAALA-IIIVGLIIARMISNAVNRLMISRK---IDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAA  103 (286)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence            345555554 456788889998876554443322   1233456889999999999999999999999999999999999


Q ss_pred             HHHHHHHhhHHHHHHHhhhhhhccCCccCCcEEEEeecCCCeEEEEEEEcceeeEEEEecCCcEEEEeccccccCcEEec
Q 006257          183 TVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNL  262 (653)
Q Consensus       183 glaiglA~qd~l~Nl~aGi~I~~~rPFrVGD~I~Iki~~~~~~G~VeeIgLrsTT~Irt~dg~~V~IPNs~L~s~~V~N~  262 (653)
                      |+++|||+|++++|++||++|+++|||++||||++    ++.+|+|++|+||+ |++|++||+.++|||+.+.++.|+||
T Consensus       104 glaiG~a~q~~l~N~~sGi~i~~~rpf~vGD~I~i----~~~~G~V~~I~~r~-T~i~t~d~~~v~IPNs~~~~~~i~N~  178 (286)
T PRK10334        104 GLAVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDL----GGVAGTVLSVQIFS-TTMRTADGKIIVIPNGKIIAGNIINF  178 (286)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEE----CCEEEEEEEEEeEE-EEEEcCCCCEEEEcchHhcCCeeEEc
Confidence            99999999999999999999999999999999999    78999999999999 99999999999999999999999999


Q ss_pred             cCCCceEEEEEEEeec-CCHHHHHHHHHHHHHHHHcCCCccccccceEEEEeecCCCCceEEEEEEEEEecCChHHHHHH
Q 006257          263 SQKSHWRIKTHLAISH-LDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLCV  341 (653)
Q Consensus       263 Sr~~~~ri~v~l~I~y-td~eki~~l~e~L~e~L~s~p~v~~~~~~P~V~v~~~~~~~ssl~i~V~~~v~~~~~~~~~~v  341 (653)
                      |+.+.+|+.+.++++| +|++++++   .++++++++|.+..+| +|.|.+.++++  ++++++++||+++.+   |+.+
T Consensus       179 s~~~~rr~~~~v~V~y~~d~~~~~~---il~~~~~~~~~vl~~p-~p~v~~~~~~d--ssi~~~v~~wv~~~~---~~~~  249 (286)
T PRK10334        179 SREPVRRNEFIIGVAYDSDIDQVKQ---ILTNIIQSEDRILKDR-EMTVRLNELGA--SSINFVVRVWSNSGD---LQNV  249 (286)
T ss_pred             CCCCeEEEEEEEEecCCCCHHHHHH---HHHHHHHhCCceecCC-CCEEEEEeeeC--ceEEEEEEEEEecch---hHHH
Confidence            9988889999999999 78888887   6788899999999888 88999999997  899999999999764   5789


Q ss_pred             HHHHHHHHHHHHHHCCCccCCCcEEEEEe
Q 006257          342 KEAILLDLLRVISHHRARLATPIRTVQKI  370 (653)
Q Consensus       342 r~~I~~~Il~~~~~~GIeia~P~qtV~~~  370 (653)
                      +.+++++|+++|+++||++|||+|++++.
T Consensus       250 ~~~~~~~I~~~f~~~gI~ip~p~~~v~~~  278 (286)
T PRK10334        250 YWDVLERIKREFDAAGISFPYPQMDVNFK  278 (286)
T ss_pred             HHHHHHHHHHHHHHCCCcCCCCCeEEEec
Confidence            99999999999999999999999998854

>PRK11465 putative mechanosensitive channel protein; Provisional

Probab=100.00  E-value=2.4e-40  Score=378.28  Aligned_cols=289  Identities=12%  Similarity=0.112  Sum_probs=226.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhc----CCc
Q 006257           64 HVMTSYIQPLMLWTGAILICRALDPVVLPTEAGEVVKQRLLNFVRSLSTVLAFAYCLSSLIQQ-AQKFFMETT----DSG  138 (653)
Q Consensus        64 ~il~sl~~PL~l~i~li~i~~al~~l~lp~~~~~~i~~~ll~~l~siliIl~i~~~l~~li~~-l~~~l~~~~----~~~  138 (653)
                      .+++.++ |+.+++++++++.++..+.+..+........+...+..++++++++++++.+.+. +.+++.+..    ...
T Consensus       425 ~~l~~lr-~l~~~~~vl~ll~a~~~l~l~~~~~~~~g~~~i~~l~~i~iil~i~~v~w~l~~~~ie~~l~~~~~~~~~~~  503 (741)
T PRK11465        425 AALKTAR-ILTVCVAVMLLLNAWGLFDFWNWLQNGAGEKTVDILIRIALILFFSAVGWTVLASLIENRLASDIHGRPLPS  503 (741)
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHhcchHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhh
Confidence            4555555 8888888888888887555443211111222333333333344333333333332 223332221    111


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhccCCccCCcEEEEe
Q 006257          139 DARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTK  218 (653)
Q Consensus       139 ~~~~~~l~~i~~li~v~i~ii~iiviL~~lGv~i~~lLa~lGi~glaiglA~qd~l~Nl~aGi~I~~~rPFrVGD~I~Ik  218 (653)
                      ....+..+++++++++++++++++++|+.+|++++++++++|++|+++|||+|++++||++|++|+++|||++||||++ 
T Consensus       504 ~r~~Tl~~ll~~~~~~~i~~i~~l~vL~~lGi~it~LlA~aGi~GlaiGfaaQ~~l~N~isGi~Il~e~pf~vGD~I~v-  582 (741)
T PRK11465        504 ARTRTLLTLFRNALAVIISTITIMIVLSEIGVNIAPLLAGAGALGLAISFGSQTLVKDIITGVFIQFENGMNTGDLVTI-  582 (741)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCCEEEE-
Confidence            2245678899999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             ecCCCeEEEEEEEcceeeEEEEecCCcEEEEeccccccCcEEeccCCCceEEEEEEEeec-CCHHHHHHHHHHHHHHHHc
Q 006257          219 IEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISH-LDVHKINSIVADMRKVLAK  297 (653)
Q Consensus       219 i~~~~~~G~VeeIgLrsTT~Irt~dg~~V~IPNs~L~s~~V~N~Sr~~~~ri~v~l~I~y-td~eki~~l~e~L~e~L~s  297 (653)
                         ++++|+||+|++|+ |++|++||+.++|||+.+.+  |+|||+. ..++.++++|+| +|.++++++++++.+.+.+
T Consensus       583 ---~g~~GtVe~I~lRs-T~iRt~dg~~i~IPNs~i~~--v~N~Sr~-~~~~~v~v~V~Y~~Didka~~iL~ev~~el~~  655 (741)
T PRK11465        583 ---GPLTGTVERMSIRS-VGVRQDTGAYHIIPWSSITT--FANFVRG-IGSVVANYDVDRHEDADKANQALKDAVAELME  655 (741)
T ss_pred             ---CCeEEEEEEEeeeE-EEEEcCCCCEEEEECCccee--eEEeccC-ceEEEEEEEeCCCCCHHHHHHHHHHHHHHhhc
Confidence               78999999999999 99999999999999999974  9999985 667888999999 8999999998888888878


Q ss_pred             CCCc----cccccceEEEEeecCCCCceEEEEEEEEEecCChHHHHHHHHHHHHHHHHHHHHCCCccCCCcEEEE
Q 006257          298 NPQV----EQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTVQ  368 (653)
Q Consensus       298 ~p~v----~~~~~~P~V~v~~~~~~~ssl~i~V~~~v~~~~~~~~~~vr~~I~~~Il~~~~~~GIeia~P~qtV~  368 (653)
                      +|++    ..++  +.+.+.++++  +++++++++|+++.   ++|.++++++++|+++|+++||++|+|+.++.
T Consensus       656 dpe~~~~il~~p--~~vgV~~lgd--Ssi~lrvr~~t~p~---~qw~v~rel~~~IK~~Fde~GIeIP~~tv~v~  723 (741)
T PRK11465        656 NEEIRGLIIGEP--NFAGIVGLTN--TAFTLRVSFTTLPL---KQWTVRFALDSQVKKHFDLAGVRAPVQTYQVL  723 (741)
T ss_pred             CccccccccCCC--CeEEEEEecC--ceEEEEEEEEECcc---hHHHHHHHHHHHHHHHHHHCCCCCCCCceEee
Confidence            8864    3333  3578889986  79999999999764   45889999999999999999999987766543

>PRK11281 hypothetical protein; Provisional

Probab=100.00  E-value=2.8e-39  Score=384.40  Aligned_cols=252  Identities=20%  Similarity=0.207  Sum_probs=221.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHH
Q 006257          102 RLLNFVRSLSTVLAFAYCLSSLIQQAQKF-FMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGG  180 (653)
Q Consensus       102 ~ll~~l~siliIl~i~~~l~~li~~l~~~-l~~~~~~~~~~~~~l~~i~~li~v~i~ii~iiviL~~lGv~i~~lLa~lG  180 (653)
                      ++.+++.+++ +++++|++.+++..+.+. ...+...   +.....++.++++++++++++++++..+|++.+++.+.+|
T Consensus       835 tl~~Ll~all-Il~i~~~l~r~l~~ll~~~~~~rl~l---~~~~~~~i~~li~y~I~~i~iliaL~~lGi~~t~L~~l~g  910 (1113)
T PRK11281        835 TLGNLLFALI-ILVVTYVLVRNLPGLLEVLVLSRLNL---RQGTSYAITTLLTYIIIAVGAVTAFSTLGVSWDKLQWLVA  910 (1113)
T ss_pred             eHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhccC---CchHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHH
Confidence            4555555554 556788888888875543 3333221   1223456889999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhHHHHHHHhhhhhhccCCccCCcEEEEeecCCCeEEEEEEEcceeeEEEEecCCcEEEEeccccccCcEE
Q 006257          181 LGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVR  260 (653)
Q Consensus       181 i~glaiglA~qd~l~Nl~aGi~I~~~rPFrVGD~I~Iki~~~~~~G~VeeIgLrsTT~Irt~dg~~V~IPNs~L~s~~V~  260 (653)
                      ++|+++|||+|++++||+||++|+++|||++||+|++    ++..|+|++|++|+ |+||++||+.|+|||+.|.++.|+
T Consensus       911 aLgVgIGfglQ~ilsNfISGiiIl~eRPfrIGD~I~I----~~~~G~V~~I~lRs-T~Irt~D~~~ViIPNs~~~t~~Ii  985 (1113)
T PRK11281        911 ALSVGLGFGLQEIFANFVSGLIILFERPVRIGDTVTI----GTFSGTVSKIRIRA-TTITDFDRKEVIVPNKAFVTERLI  985 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCCEEEE----CCEEEEEEEEEeEE-EEEEcCCCCEEEEechhhhcCceE
Confidence            9999999999999999999999999999999999999    78999999999999 999999999999999999999999


Q ss_pred             eccCCC-ceEEEEEEEeec-CCHHHHHHHHHHHHHHHHcCCCccccccceEEEEeecCCCCceEEEEEEEEEecCChHHH
Q 006257          261 NLSQKS-HWRIKTHLAISH-LDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEY  338 (653)
Q Consensus       261 N~Sr~~-~~ri~v~l~I~y-td~eki~~l~e~L~e~L~s~p~v~~~~~~P~V~v~~~~~~~ssl~i~V~~~v~~~~~~~~  338 (653)
                      |||..+ .+|+.+.|+|+| +|++++++   .+.+++.++|.+..+| +|.|++.+|++  ++++++++||+++.  .++
T Consensus       986 N~S~~~~~~Rv~i~vgV~Y~sDi~~v~~---iL~eaa~~~p~Vl~~P-~P~V~~~~fgd--ssi~~~lr~wv~~~--~~~ 1057 (1113)
T PRK11281        986 NWSLSDTVTRVVIKVGVAYGSDLEKVRE---LLLQAATENPRVMKEP-EPQVFFLNFGA--STLDHELRLYVREL--GDR 1057 (1113)
T ss_pred             eCCCCCcceEEEEEEEeCCCCCHHHHHH---HHHHHHHcCcccccCC-CCEEEEEeccC--ceEEEEEEEEEcCH--hhH
Confidence            999987 478999999999 88888777   6888999999999998 88999999996  89999999999864  578


Q ss_pred             HHHHHHHHHHHHHHHHHCCCccCCCcEEEEEe
Q 006257          339 LCVKEAILLDLLRVISHHRARLATPIRTVQKI  370 (653)
Q Consensus       339 ~~vr~~I~~~Il~~~~~~GIeia~P~qtV~~~  370 (653)
                      +.++++++.+|+++|+++||++|||.++|++.
T Consensus      1058 ~~v~s~L~~~I~~~f~e~GIeIpfPq~~V~i~ 1089 (1113)
T PRK11281       1058 SPTVDELNRRIDRLFRENDINIAFNQLDVFLK 1089 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHCCCcCCCCCeeEEec
Confidence            89999999999999999999999999999854

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=100.00  E-value=1.3e-38  Score=377.44  Aligned_cols=251  Identities=14%  Similarity=0.144  Sum_probs=220.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Q 006257          103 LLNFVRSLSTVLAFAYCLSSLIQQAQ-KFFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGL  181 (653)
Q Consensus       103 ll~~l~siliIl~i~~~l~~li~~l~-~~l~~~~~~~~~~~~~l~~i~~li~v~i~ii~iiviL~~lGv~i~~lLa~lGi  181 (653)
                      +.+++.+++ +++++|++.+.+..+. +++.++...   +.....++.++++++++++++++++..+|++.+++.+.+|+
T Consensus       833 l~~ll~All-Iliv~~~l~r~l~~lle~~l~~~~~l---~~~~~~~i~~l~~y~I~~ig~l~~L~~lGI~~t~l~al~ga  908 (1109)
T PRK10929        833 LGSVLIAIL-VFIITTQLVRNLPALLELALLQHLDL---TPGTGYAITTITKYLLMLIGGLVGFSMIGIEWSKLQWLVAA  908 (1109)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCC---ChhHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence            445555554 4566777788777744 444343221   22335678899999999999999999999999999999999


Q ss_pred             HHHHHHHHhhHHHHHHHhhhhhhccCCccCCcEEEEeecCCCeEEEEEEEcceeeEEEEecCCcEEEEeccccccCcEEe
Q 006257          182 GTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRN  261 (653)
Q Consensus       182 ~glaiglA~qd~l~Nl~aGi~I~~~rPFrVGD~I~Iki~~~~~~G~VeeIgLrsTT~Irt~dg~~V~IPNs~L~s~~V~N  261 (653)
                      +|+++|||+|++++||+||++|+++|||++||||++    ++.+|+|++|++|+ |+|+++||+.|+|||+.|.++.|+|
T Consensus       909 lGVgIGfAlQ~ilsNfiSGIiIL~erPfrVGD~I~I----~~~~GtV~~I~lRs-T~Irt~Dg~~IiIPNs~~it~~IiN  983 (1109)
T PRK10929        909 LGVGLGFGLQEIFANFISGLIILFEKPIRIGDTVTI----RDLTGSVTKINTRA-TTISDWDRKEIIVPNKAFITEQFIN  983 (1109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCEEEE----CCEEEEEEEEeeeE-EEEEeCCCCEEEEEChhhhcCceEe
Confidence            999999999999999999999999999999999999    78999999999999 9999999999999999999999999


Q ss_pred             ccCCCc-eEEEEEEEeec-CCHHHHHHHHHHHHHHHHcCCCccccccceEEEEeecCCCCceEEEEEEEEEecCChHHHH
Q 006257          262 LSQKSH-WRIKTHLAISH-LDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYL  339 (653)
Q Consensus       262 ~Sr~~~-~ri~v~l~I~y-td~eki~~l~e~L~e~L~s~p~v~~~~~~P~V~v~~~~~~~ssl~i~V~~~v~~~~~~~~~  339 (653)
                      ||+.+. +|+.+.|+|+| +|++++++   .+.+++.++|.+..+| +|.|++.+|++  +++.++++||++..  .+++
T Consensus       984 ~S~~d~~~Rv~i~VgV~Y~sDie~v~~---iL~eaa~~~~~VL~~P-~P~V~~~~fgd--ssi~~elr~wv~~~--~~~~ 1055 (1109)
T PRK10929        984 WSLSDSVTRVVLTIPAPADANSEEVTE---ILLTAARRCSLVLDNP-APEVFLVDLQQ--GIQIFELRIYAAEM--GHRM 1055 (1109)
T ss_pred             cCCCCcceEEEEEEEeCCCCCHHHHHH---HHHHHHHhCccccCCC-CCEEEEEecCC--CceEEEEEEEEcCh--hhHH
Confidence            999875 79999999999 89888887   6778999999999888 88999999986  79999999999743  5689


Q ss_pred             HHHHHHHHHHHHHHHHCCCccCCCcEEEEEe
Q 006257          340 CVKEAILLDLLRVISHHRARLATPIRTVQKI  370 (653)
Q Consensus       340 ~vr~~I~~~Il~~~~~~GIeia~P~qtV~~~  370 (653)
                      .++++++.+|+++|+++||++|||.++|++.
T Consensus      1056 ~v~~el~~~I~~~F~~~GIeIPfPq~~v~i~ 1086 (1109)
T PRK10929       1056 PLRHEIHQLILAGFREHGIDMPFPPFQMRLE 1086 (1109)
T ss_pred             HHHHHHHHHHHHHHHHCCCcCCCCCeEEEee
Confidence            9999999999999999999999999999965

>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=4.7e-35  Score=332.73  Aligned_cols=250  Identities=18%  Similarity=0.217  Sum_probs=220.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHH
Q 006257          104 LNFVRSLSTVLAFAYCLSSLIQQA-QKFFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLG  182 (653)
Q Consensus       104 l~~l~siliIl~i~~~l~~li~~l-~~~l~~~~~~~~~~~~~l~~i~~li~v~i~ii~iiviL~~lGv~i~~lLa~lGi~  182 (653)
                      ..++.+++ +++++|++.|.+... ...+..+..-+..-   -..+.+++.++++.+++++.++.+|+|.+++-..+|.+
T Consensus       559 ~~ll~avl-~~~~~~~l~r~~~~~L~~~vl~r~~~~~G~---r~~I~t~~~Y~~~~i~~l~~lS~~Gi~lssL~~~~gAL  634 (835)
T COG3264         559 GALLQAVL-LFLITYVLTRNLPGWLEVRVLQRLDLDAGT---RYSITTLLGYLLIAIGGLVGLSTLGIDLSSLQWLAGAL  634 (835)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcccCcch---HHHHHHHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHh
Confidence            34445444 455677778887774 44555554432221   24688999999999999999999999999999999999


Q ss_pred             HHHHHHHhhHHHHHHHhhhhhhccCCccCCcEEEEeecCCCeEEEEEEEcceeeEEEEecCCcEEEEeccccccCcEEec
Q 006257          183 TVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNL  262 (653)
Q Consensus       183 glaiglA~qd~l~Nl~aGi~I~~~rPFrVGD~I~Iki~~~~~~G~VeeIgLrsTT~Irt~dg~~V~IPNs~L~s~~V~N~  262 (653)
                      |+.+||++|++++||+||++|+++|||||||||++    |+++|+|.+|+.|+ |+|+++||..|+|||+.|.++.|.||
T Consensus       635 svGiGFGLQ~I~~NFVSGlIiL~ErpvkvGD~It~----g~~~G~V~~I~vRA-T~I~~fd~~~vIVPNs~fI~~qV~NW  709 (835)
T COG3264         635 SVGLGFGLQEIVSNFVSGLIILFERPVKVGDTVTI----GTVSGTVRKISVRA-TTIRTFDRKEVIVPNSAFITEQVINW  709 (835)
T ss_pred             hhhhchhHHHHHHHhhhhhhhheecCcccCCEEEE----CCceEEEEEEEeeE-EEEEeCCCCeEEeccHHHHhhheeee
Confidence            99999999999999999999999999999999999    78999999999999 99999999999999999999999999


Q ss_pred             cCCC-ceEEEEEEEeec-CCHHHHHHHHHHHHHHHHcCCCccccccceEEEEeecCCCCceEEEEEEEEEecCChHHHHH
Q 006257          263 SQKS-HWRIKTHLAISH-LDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLC  340 (653)
Q Consensus       263 Sr~~-~~ri~v~l~I~y-td~eki~~l~e~L~e~L~s~p~v~~~~~~P~V~v~~~~~~~ssl~i~V~~~v~~~~~~~~~~  340 (653)
                      +.++ ..|+.+.|+++| +|++++++   .+.+..+.||.+.++| +|.|++.+|++  +++++++++|+......  ..
T Consensus       710 s~~~~~~R~~i~v~vay~sD~~~V~~---~Ll~~A~~~p~Vl~~P-~P~v~f~~fg~--s~L~fELr~~v~~~~~~--~~  781 (835)
T COG3264         710 SLRDTTTRLVIPVGVAYGSDPELVRE---LLLEAAREHPRVLKDP-APEVFFTAFGA--SSLDFELRVYVAELGDR--MP  781 (835)
T ss_pred             eccCceEEEEEEecccCCCCHHHHHH---HHHHHHHhCCCccCCC-CCeeEeecccc--cceeEEEEEEeeccccc--cc
Confidence            9988 689999999999 89999888   7999999999999999 89999999997  79999999999877443  34


Q ss_pred             HHHHHHHHHHHHHHHCCCccCCCcEEEEEe
Q 006257          341 VKEAILLDLLRVISHHRARLATPIRTVQKI  370 (653)
Q Consensus       341 vr~~I~~~Il~~~~~~GIeia~P~qtV~~~  370 (653)
                      ++++++..|.+.|++|||++|||.+.+++-
T Consensus       782 ~~~~l~~~I~~~fre~gI~ipfpq~~v~l~  811 (835)
T COG3264         782 VRSELNRAILDRFRENGIEIPFPQREVRLK  811 (835)
T ss_pred             hHHHHHHHHHHHHHHcCCCCCCchHheEec
Confidence            999999999999999999999999998854

>PF00924 MS_channel: Mechanosensitive ion channel; InterPro: IPR006685 Mechanosensitive (MS) channels provide protection against hypo-osmotic shock, responding both to stretching of the cell membrane and to membrane depolarisation

Probab=100.00  E-value=6.3e-36  Score=295.96  Aligned_cols=203  Identities=25%  Similarity=0.414  Sum_probs=170.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhccCCccCCcEEEEeecCCCeEEEEE
Q 006257          150 KAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVE  229 (653)
Q Consensus       150 ~li~v~i~ii~iiviL~~lGv~i~~lLa~lGi~glaiglA~qd~l~Nl~aGi~I~~~rPFrVGD~I~Iki~~~~~~G~Ve  229 (653)
                      +++.++++++++++++..+|++...+++++|++|+++|||+|++++|+++|++|++++||++||||++    ++..|+|+
T Consensus         2 ~i~~~~~~~~~~~~~l~~~g~~~~~l~~~~g~~~~~i~f~~~~~~~n~~~gi~i~~~~pf~vGD~I~i----~~~~G~V~   77 (206)
T PF00924_consen    2 KIIRIVIIIVGILIILSILGIDVSSLLASLGVLGLAIGFAFQDIISNFISGIIILFERPFKVGDRIEI----GGVEGRVE   77 (206)
T ss_dssp             -HHHHHHHHHHHHHHHHCCT--SCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCC-SS-TT-EEES----SS-EEEEE
T ss_pred             hHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccCCCEEEE----EEeehHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999999    78999999


Q ss_pred             EEcceeeEEEEecCCcEEEEeccccccCcEEeccC-CCceEEEEEEEeec-CCHHHHHHHHHHHHHHHHcCCCccccccc
Q 006257          230 HVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQ-KSHWRIKTHLAISH-LDVHKINSIVADMRKVLAKNPQVEQQRLH  307 (653)
Q Consensus       230 eIgLrsTT~Irt~dg~~V~IPNs~L~s~~V~N~Sr-~~~~ri~v~l~I~y-td~eki~~l~e~L~e~L~s~p~v~~~~~~  307 (653)
                      +|+|++ |++|++||++++|||+.|.++.|.|+|+ .+.+++.+.+.++| +|+++++++.+.+.+.++++|.+...+ +
T Consensus        78 ~I~l~~-t~l~~~~g~~v~IPNs~l~~~~i~N~s~~~~~~~~~v~~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~  155 (206)
T PF00924_consen   78 EIGLRS-TRLRTWDGEIVIIPNSKLISSPIVNYSRSSPYRRVVVEIPVDYDTDPEKIEELREKIEEALRSNPYIFKEP-E  155 (206)
T ss_dssp             EE-SSE-EEEEETTS-EEEEEHHHHHCS-EEETTT-SSEEEEEEEEEE-TTS----HHHHHHHHHHHHHH-TTC-TTS--
T ss_pred             hcCcce-eeeecCCCCEEEEEchheeeEEEEEeeccCCceeeeeeeeEecCCCchHHHHHHHHHHHHHhcCchhhcCC-C
Confidence            999999 9999999999999999999999999999 77899999999999 788999999999999999999988766 7


Q ss_pred             eEEEEeecCCCCceEEEEEEEEEecCChHHHHHHHHHHHHHHHHHHHHCCCcc
Q 006257          308 RRVFLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARL  360 (653)
Q Consensus       308 P~V~v~~~~~~~ssl~i~V~~~v~~~~~~~~~~vr~~I~~~Il~~~~~~GIei  360 (653)
                      |.+.+..+++  .++.+.++||++..++.+++.+|++++.++++.|++|||+|
T Consensus       156 ~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~gI~~  206 (206)
T PF00924_consen  156 PRVVVDEIGD--SSLEFRIRVYVKNQDPEKYWEIRSEIRKRILEILEEHGIEI  206 (206)
T ss_dssp             EEEEEEEE-S--SSEEEEEEEEEEC---CCHHHHHHHHHHHHHHHHHHHT---
T ss_pred             CeEEEccccC--CceEEEEEEEEEeCchhhHHHHHHHHHHHHHHHHHHccCCC
Confidence            7899999986  69999999999997788899999999999999999999986

They are present in the membranes of organisms from the three domains of life: bacteria, archaea, and eukarya []. There are two families of MS channels: large-conductance MS channels (MscL) and small-conductance MS channels (MscS or YGGB). The pressure threshold for MscS opening is 50% that of MscL []. The MscS family is much larger and more variable in size and sequence than the MscL family. Much of the diversity in MscS proteins occurs in the size of the transmembrane regions, which ranges from three to eleven transmembrane helices, although the three C-terminal helices are conserved. This family contains sequences form the MscS family of proteins. MscS folds as a homo-heptamer with a cylindrical shape, and can be divided into transmembrane and extramembrane regions: an N-terminal periplasmic region, a transmembrane region, and a C-terminal cytoplasmic region (middle and C-terminal domains). The transmembrane region forms a channel through the membrane that opens into a chamber enclosed by the extramembrane portion, the latter connecting to the cytoplasm through distinct portals [].; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 2OAU_E 2VV5_F.

>COG0668 MscS Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=1.2e-33  Score=294.92  Aligned_cols=211  Identities=22%  Similarity=0.365  Sum_probs=193.3

Q ss_pred             hHH-HHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhccCCccCCcEEEEeecCC
Q 006257          144 GFQ-FAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGY  222 (653)
Q Consensus       144 ~l~-~i~~li~v~i~ii~iiviL~~lGv~i~~lLa~lGi~glaiglA~qd~l~Nl~aGi~I~~~rPFrVGD~I~Iki~~~  222 (653)
                      .+. ++.++.+++++++++++++..+|++++++++++|++|+++|||+|++++|+++|+++++++||++||||++    +
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~lla~~G~~glaigla~q~~~~n~~~Gi~il~~~~f~vGD~I~i----~  157 (316)
T COG0668          82 TLSVFLSNLLRILILVVALLIVLSVLGVQVTSLLAGLGALGLAIGLALQDLLSNLIAGIFLLLERPFKVGDWIEI----G  157 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhHhheecCcCcCCEEEE----C
Confidence            344 78999999999999999999999999999999999999999999999999999999999999999999999    7


Q ss_pred             -CeEEEEEEEcceeeEEEEecCCcEEEEeccccccCcEEeccCCCceEEEEEEEeec-CCHHHHHHHHHHHHHHHHcCCC
Q 006257          223 -EVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISH-LDVHKINSIVADMRKVLAKNPQ  300 (653)
Q Consensus       223 -~~~G~VeeIgLrsTT~Irt~dg~~V~IPNs~L~s~~V~N~Sr~~~~ri~v~l~I~y-td~eki~~l~e~L~e~L~s~p~  300 (653)
                       ++.|+|++|++++ |++|++||++++|||+.+.++.|.||++...+|+.+.+.++| +|.++++++   +++++...+.
T Consensus       158 ~~~~G~V~~i~~~~-T~ir~~dg~~v~iPNs~i~~~~i~N~s~~~~~~~~~~v~v~~~~~~~~~~~i---~~~~~~~~~~  233 (316)
T COG0668         158 SGVEGTVEDIGLRS-TTIRTLDGRIVTIPNSKLFTANVVNYSREPGRRVEVKVGVAYDSDLEKALKI---LKEVLEELPE  233 (316)
T ss_pred             CCceEEEEEEEEEE-EEEEcCCCCEEEccchhhccCceEeCCCCCcEEEEEEEeeccCCCHHHHHHH---HHHHHHhccc
Confidence             6999999999999 999999999999999999999999999998889999999999 888888885   4455555555


Q ss_pred             cc-ccccceEEEEeecCCCCceEEEEEEEEEecCChHHHHHHHHHHHHHHHHHHHHCCCccCCCcEEEE
Q 006257          301 VE-QQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTVQ  368 (653)
Q Consensus       301 v~-~~~~~P~V~v~~~~~~~ssl~i~V~~~v~~~~~~~~~~vr~~I~~~Il~~~~~~GIeia~P~qtV~  368 (653)
                      .. .++ +|.+.+.++++  +++.+.+++|++..+   ++..+++++..+++.++++||+++||++.+.
T Consensus       234 ~~~~~~-~~~v~~~~~~~--~~~~i~v~~~t~~~~---~~~~~~~~~~~i~~~~~~~gi~i~~p~~~~~  296 (316)
T COG0668         234 VLKIEP-EPVIGVSELGD--SGINIRVRFWTNPED---LWSVQRELNLRIKEALEEAGIEIPYPQQSVL  296 (316)
T ss_pred             ccccCC-CcEEEEeeccC--CceEEEEEEEecchh---HHHHHHHHHHHHHHHHHHcCCCCCCCCeeEE
Confidence            54 355 67899999996  799999999998865   6899999999999999999999999999977

>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]

Probab=99.77  E-value=2.8e-18  Score=196.21  Aligned_cols=219  Identities=16%  Similarity=0.193  Sum_probs=191.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhhHHHHHHHhh-hhhhccCCccCCcEEEEeecC
Q 006257          143 MGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSS-AMIHATRPFVLNEWIQTKIEG  221 (653)
Q Consensus       143 ~~l~~i~~li~v~i~ii~iiviL~~lGv~i~~lLa~lGi~glaiglA~qd~l~Nl~aG-i~I~~~rPFrVGD~I~Iki~~  221 (653)
                      ..+.-+.+++.+++.++++++.+-.+|++...+++..+-.-+++.|.+.+++++++.+ |++++.+||.+||+|.|    
T Consensus       478 taV~kL~~il~~Iv~vv~~~i~lil~~i~~~~~l~~~~sq~v~l~fif~~~~k~~~esiIFlfv~HPyDvGDRv~V----  553 (714)
T KOG4629|consen  478 TAVNKLDRILNFIVAVVLLVIWLILLGINTSKLLLVISSQLVGLAFIFGNIVKELLESIIFLFVMHPYDVGDRVVV----  553 (714)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcccceeeeeeecccceeeeeehhhHHHHHHHHHhheeecCCCCCCCeEEE----
Confidence            4466777788888888888888889999999999988877888999999999999986 45678899999999999    


Q ss_pred             CCeEEEEEEEcceeeEEEEecCCcEEEEeccccccCcEEeccCCCceEEEEEEEeec-CCHHHHHHHHHHHHHHHHcCCC
Q 006257          222 YEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISH-LDVHKINSIVADMRKVLAKNPQ  300 (653)
Q Consensus       222 ~~~~G~VeeIgLrsTT~Irt~dg~~V~IPNs~L~s~~V~N~Sr~~~~ri~v~l~I~y-td~eki~~l~e~L~e~L~s~p~  300 (653)
                      +++.-.|++++|++ |.+..+||+.+++||+.|.+..|.|+.|++.+...+++.+.. ++.+++.++.+.+.+++++.|+
T Consensus       554 Dg~~~vVeemnLls-TvF~~~dg~kI~~PNS~L~~k~I~N~rRS~~~~~~v~f~i~~~T~~~Ki~~Lk~rI~~ylks~~~  632 (714)
T KOG4629|consen  554 DGVNLVVEEMNLLS-TVFLRVDGRKIFIPNSVLWTKAISNYRRSPDMGDEVEFLISSSTPFEKIERLKERIAEYLKSSPD  632 (714)
T ss_pred             eceEEEEEEeccce-EEEEEECCeEEEeecHHHHhhhhhhhhcCccccccEEEEecCCCCHHHHHHHHHHHHHHHhcCcc
Confidence            56889999999999 999999999999999999999999999999988999999999 8999999999999999999999


Q ss_pred             ccccccceEEEEeecCCCCc-eEEEEEEEEEecCChHHHHHHHHHHHHHHHHHHHHCCCccCCCcEEEE
Q 006257          301 VEQQRLHRRVFLDNINPENQ-ALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTVQ  368 (653)
Q Consensus       301 v~~~~~~P~V~v~~~~~~~s-sl~i~V~~~v~~~~~~~~~~vr~~I~~~Il~~~~~~GIeia~P~qtV~  368 (653)
                      .+..  .+.+.+.++.+.+. .+.+.+.++.+.++..+++..|.++..++.+.+++.+|++-++++.+.
T Consensus       633 ~~~p--~~~~~i~~~e~~n~v~i~v~~~h~~n~Qd~~~~~~Rr~~~~~~l~~~~~eLdI~y~l~p~~in  699 (714)
T KOG4629|consen  633 DYYP--DLMVVIEEIEDLNSVKICVVVQHKINFQDMKERWSRRTEFVSALTKIMRELDIEYTLYPLDIN  699 (714)
T ss_pred             cccc--chhhHHHhhhhcCcceEEEEEEeecchhhHHHHHhhHHHHHHHHHHHHHHcCcceeecCcchh
Confidence            8833  23577777776443 566677778888899999999999999999999999999966655544

>PRK10263 DNA translocase FtsK; Provisional

Probab=90.42  E-value=4.9  Score=50.78  Aligned_cols=25  Identities=4%  Similarity=0.029  Sum_probs=10.8

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHH
Q 006257           18 SPQALKLVPGIAIIVFATWGLGPLM   42 (653)
Q Consensus        18 ~p~~l~llial~ill~a~~ll~~Ll   42 (653)
                      .....+.+.-++.++++++.+..++
T Consensus        15 ~~~~~rrL~E~~gIlLlllAlfL~l   39 (1355)
T PRK10263         15 KLSSGRRLLEALLILIVLFAVWLMA   39 (1355)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444555444444333333

>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]

Probab=86.10  E-value=54  Score=35.36  Aligned_cols=33  Identities=18%  Similarity=0.328  Sum_probs=26.2

Q ss_pred             ceEEEEEEEeec-CCHHHHHHHHHHHHHHHHcCC
Q 006257          267 HWRIKTHLAISH-LDVHKINSIVADMRKVLAKNP  299 (653)
Q Consensus       267 ~~ri~v~l~I~y-td~eki~~l~e~L~e~L~s~p  299 (653)
                      ...+++.+.++. -+.++..++.+.+.+.+++..
T Consensus       244 ~~~id~~i~v~~~ls~~eah~I~~~ie~~i~~~~  277 (304)
T COG0053         244 RIFIDVHIEVDPDLSLEEAHEIADEVEKRIKKEF  277 (304)
T ss_pred             eEEEEEEEEECCCCChHHHHHHHHHHHHHHHHhc
Confidence            445678888887 688999999999999887654

>PRK12438 hypothetical protein; Provisional

Probab=83.76  E-value=64  Score=40.25  Aligned_cols=13  Identities=15%  Similarity=0.718  Sum_probs=8.1

Q ss_pred             ccCCccCC-cEEEE
Q 006257          205 ATRPFVLN-EWIQT  217 (653)
Q Consensus       205 ~~rPFrVG-D~I~I  217 (653)
                      ..+.|.+. |.|+.
T Consensus       332 TR~AYgL~~d~v~~  345 (991)
T PRK12438        332 TRQAYGIGGDWVQY  345 (991)
T ss_pred             HHHHhCCCccceEE
Confidence            33477774 67764

>PF03699 UPF0182: Uncharacterised protein family (UPF0182); InterPro: IPR005372 This family contains uncharacterised integral membrane proteins

Probab=83.04  E-value=93  Score=37.97  Aligned_cols=25  Identities=8%  Similarity=0.092  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCch
Q 006257          148 AGKAVYSAVWVASASLFMELLGFST  172 (653)
Q Consensus       148 i~~li~v~i~ii~iiviL~~lGv~i  172 (653)
                      ...++.++..++++++++..+--+.
T Consensus       247 ~~~il~~i~~~~A~~~~~~~~~~~~  271 (774)
T PF03699_consen  247 AYTILAVIALLCAVLFFINIFRRNW  271 (774)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccc
Confidence            3445555555566666666553343

; GO: 0016021 integral to membrane

>PRK00068 hypothetical protein; Validated

Probab=82.96  E-value=61  Score=40.35  Aligned_cols=19  Identities=5%  Similarity=0.209  Sum_probs=8.1

Q ss_pred             HHHHHHHHHHHHHHHHHHh
Q 006257          150 KAVYSAVWVASASLFMELL  168 (653)
Q Consensus       150 ~li~v~i~ii~iiviL~~l  168 (653)
                      .++.++.+++++++++..+
T Consensus       261 ~iL~~ia~i~a~~~~~~~~  279 (970)
T PRK00068        261 LILLVIAVICAIAVFSSIV  279 (970)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444443

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=80.18  E-value=98  Score=37.43  Aligned_cols=39  Identities=18%  Similarity=0.042  Sum_probs=23.9

Q ss_pred             HHHHHHhCCchHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Q 006257          162 SLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSS  200 (653)
Q Consensus       162 iviL~~lGv~i~~lLa~lGi~glaiglA~qd~l~Nl~aG  200 (653)
                      +.+|...+..++.+..+..++-+++++.++..+.+..--
T Consensus       285 l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~  323 (709)
T COG2274         285 LAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRK  323 (709)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444455555555566666677788888877776533

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	653
2vv5_A	286	MSCS, small-conductance mechanosensitive channel;	1e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09

>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A Length = 286

 Score = 73.9 bits (182), Expect = 1e-14
 Identities = 35/194 (18%), Positives = 80/194 (41%), Gaps = 20/194 (10%)

Query: 146 QFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHA 205
            F    V   +   +    +  +G  T   +   G   +++ LA +   +N  +  ++  
Sbjct: 67  DFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLVVGLALQGSLSNLAAGVLLVM 126

Query: 206 TRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQK 265
            RPF   E++        V+GTV  V  +S T +R  D + + IPN K     + N S++
Sbjct: 127 FRPFRAGEYVDLG----GVAGTVLSVQIFS-TTMRTADGKIIVIPNGKIIAGNIINFSRE 181

Query: 266 SHWRIKTHLAISH-LDVHK----INSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQ 320
              R +  + +++  D+ +    + +I+    ++L K+ ++        V L+ +     
Sbjct: 182 PVRRNEFIIGVAYDSDIDQVKQILTNIIQSEDRIL-KDREMT-------VRLNELG--AS 231

Query: 321 ALLILVSCFVKTSH 334
           ++  +V  +  +  
Sbjct: 232 SINFVVRVWSNSGD 245

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.1 bits (142), Expect = 4e-09
 Identities = 69/469 (14%), Positives = 133/469 (28%), Gaps = 118/469 (25%)

Query: 10  KSYNALQCSPQAL-KLVPGIAIIVFATWGLG------PLMRQSRNLLLRKSDNS--WKKS 60
           + Y  L+   QAL +L P   +++    G G       +    +  +  K D    W   
Sbjct: 135 QPYLKLR---QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK--VQCKMDFKIFWLNL 189

Query: 61  KTHHVMTSYIQPLMLWTGAILICRALDP-----------VVLPTEAGEVVKQRLL---NF 106
           K  +   + ++  ML      +   +DP           + L   + +   +RLL    +
Sbjct: 190 KNCNSPETVLE--MLQK----LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243

Query: 107 VRSL---------STVLAFAY-CLSSLIQQAQKFFMETTDSGDARNMGFQFAGKAVYSAV 156
              L             AF   C         K  + T            F   A  + +
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSC---------KILLTTRFKQVTD-----FLSAATTTHI 289

Query: 157 WVASASLFMELLGFSTQKWLT--AGGLGTVLLTLAGREIFTNFLSSAMIHA-TRPFV--L 211
                SL    +  +  +  +     L      L    + TN    ++I    R  +   
Sbjct: 290 -----SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW 344

Query: 212 NEWIQTKIEGYE--VSGTVEHVGWWSPTIVRG--ED----REAVHIPNHKFTVNVVRNLS 263
           + W     +     +  ++  +    P   R   +       + HIP    ++     + 
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVL---EPAEYRKMFDRLSVFPPSAHIPTILLSL-----I- 395

Query: 264 QKSHWRIKTHLAISHLDVHKINSIVADMRK--VLAKNPQVEQQRLHRRVFLDNINPENQA 321
               W          +    +  +V  + K  ++ K P+     +        +  EN+ 
Sbjct: 396 ----W--------FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY 443

Query: 322 LL--ILVSCFVKTSHHEEYLCVKEAILLD--LLRVISHH--RARLATPIRTVQKIFSDAD 375
            L   +V  +      +    +     LD      I HH         +   + +F D  
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPY--LDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR 501

Query: 376 -LEN-VPFADTIYNRGGGASNRPLLLIEPPYR--INGEDKTKSQTRPSR 420
            LE  +    T +N  G   N   L     Y+  I       +  +  R
Sbjct: 502 FLEQKIRHDSTAWNASGSILN--TLQQLKFYKPYI-----CDNDPKYER 543

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	653
2vv5_A	286	MSCS, small-conductance mechanosensitive channel;	100.0
3udc_A	285	Small-conductance mechanosensitive channel, C-TER	100.0

>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A

Probab=100.00  E-value=4.8e-43  Score=364.93  Aligned_cols=248  Identities=18%  Similarity=0.255  Sum_probs=220.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Q 006257          105 NFVRSLSTVLAFAYCLSSLIQQAQKFFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTV  184 (653)
Q Consensus       105 ~~l~siliIl~i~~~l~~li~~l~~~l~~~~~~~~~~~~~l~~i~~li~v~i~ii~iiviL~~lGv~i~~lLa~lGi~gl  184 (653)
                      +++.++ ++++++|++.+++..+.+.+..+..   .+.....++.+++++++++++++++|..+|++++++++++|++|+
T Consensus        30 ~i~~~~-~i~~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~i~~i~~~~~l~~~gi~~~~l~a~~g~~g~  105 (286)
T 2vv5_A           30 NIVAAL-AIIIVGLIIARMISNAVNRLMISRK---IDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGL  105 (286)
T ss_dssp             HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSTTHHHHHHHHHH
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            344434 3456788888888775544443322   234456789999999999999999999999999999999999999


Q ss_pred             HHHHHhhHHHHHHHhhhhhhccCCccCCcEEEEeecCCCeEEEEEEEcceeeEEEEecCCcEEEEeccccccCcEEeccC
Q 006257          185 LLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQ  264 (653)
Q Consensus       185 aiglA~qd~l~Nl~aGi~I~~~rPFrVGD~I~Iki~~~~~~G~VeeIgLrsTT~Irt~dg~~V~IPNs~L~s~~V~N~Sr  264 (653)
                      ++|||+|++++|++||++|+++|||++||||++    ++.+|+|++|+||+ |++|++||+.++|||+.+.++.|+|||+
T Consensus       106 aig~a~q~~l~n~~sGi~i~~~~pf~vGD~I~i----~g~~G~V~~I~l~~-T~i~t~dg~~v~IPNs~l~~~~i~N~s~  180 (286)
T 2vv5_A          106 VVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDL----GGVAGTVLSVQIFS-TTMRTADGKIIVIPNGKIIAGNIINFSR  180 (286)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHTTCSSCTTCEEES----SSCEEEEEEECSSE-EEEECTTSCEEEEEHHHHHTSCEEESSS
T ss_pred             HHHHHHHHHHHHHHhhhHHHhcCCccCCCEEEE----CCEEEEEEEEEeEE-EEEEeCCCCEEEechHHHhhCceEECCC
Confidence            999999999999999999999999999999999    68999999999999 9999999999999999999999999999


Q ss_pred             CCceEEEEEEEeec-CCHHHHHHHHHHHHHHHHcCCCccccccceEEEEeecCCCCceEEEEEEEEEecCChHHHHHHHH
Q 006257          265 KSHWRIKTHLAISH-LDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLCVKE  343 (653)
Q Consensus       265 ~~~~ri~v~l~I~y-td~eki~~l~e~L~e~L~s~p~v~~~~~~P~V~v~~~~~~~ssl~i~V~~~v~~~~~~~~~~vr~  343 (653)
                      .+.+|+.+.++++| +|++++++   .++++++++|.+..++ +|.|.+.++++  ++++++++||+++.   +|+.+|+
T Consensus       181 ~~~~r~~~~v~v~y~~d~~~v~~---~l~~~~~~~~~vl~~p-~p~v~v~~~~~--~~i~~~v~~~~~~~---~~~~~~~  251 (286)
T 2vv5_A          181 EPVRRNEFIIGVAYDSDIDQVKQ---ILTNIIQSEDRILKDR-EMTVRLNELGA--SSINFVVRVWSNSG---DLQNVYW  251 (286)
T ss_dssp             SSEEEEEEEEEECTTSCHHHHHH---HHHHHHHHCTTBCTTS-CEEEEEEEECS--SSEEEEEEEEEETT---THHHHHH
T ss_pred             CCcEEEEEEEEEcCCCCHHHHHH---HHHHHHHhCcccccCC-CCEEEEEEecC--CeEEEEEEEEEccc---hHHHHHH
Confidence            98889999999999 88888777   6888899999998887 78999999986  79999999999975   4689999


Q ss_pred             HHHHHHHHHHHHCCCccCCCcEEEEEe
Q 006257          344 AILLDLLRVISHHRARLATPIRTVQKI  370 (653)
Q Consensus       344 ~I~~~Il~~~~~~GIeia~P~qtV~~~  370 (653)
                      +++.+|+++|+++||++|||+|++++.
T Consensus       252 ~l~~~i~~~~~~~gI~ip~P~~~v~~~  278 (286)
T 2vv5_A          252 DVLERIKREFDAAGISFPYPQMDVNFK  278 (286)
T ss_dssp             HHHHHHHHHHHHHTCCCCCCEEEEEEE
T ss_pred             HHHHHHHHHHHHCCCcCCCCceEEEec
Confidence            999999999999999999999999854

>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*

Probab=100.00  E-value=6.9e-41  Score=348.43  Aligned_cols=215  Identities=18%  Similarity=0.268  Sum_probs=190.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhccCCccCCcEEEEeecCC
Q 006257          143 MGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVLNEWIQTKIEGY  222 (653)
Q Consensus       143 ~~l~~i~~li~v~i~ii~iiviL~~lGv~i~~lLa~lGi~glaiglA~qd~l~Nl~aGi~I~~~rPFrVGD~I~Iki~~~  222 (653)
                      ....++.+++++++++++++++|..+|++++++++++|++|+++|||+|++++|++||++|+++|||++||||++    +
T Consensus        63 tl~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~l~a~~g~~g~aig~a~q~~l~n~~~Gi~i~~~~pf~vGD~I~i----~  138 (285)
T 3udc_A           63 TLTSLTKNAVRYIIYFLAGASILKLFNIDMTSLLAVAGIGSLAIGFGAQNLVKDMISGFFIIFEDQFSVGDYVTI----N  138 (285)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTSCCTTCEEEE----T
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccCCCEEEE----C
Confidence            456789999999999999999999999999999999999999999999999999999999999999999999999    7


Q ss_pred             CeEEEEEEEcceeeEEEEecCCcEEEEeccccccCcEEeccCCCceEEEEEEEeec-CCHHHHHHHHHHHHHHHHcCCCc
Q 006257          223 EVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLSQKSHWRIKTHLAISH-LDVHKINSIVADMRKVLAKNPQV  301 (653)
Q Consensus       223 ~~~G~VeeIgLrsTT~Irt~dg~~V~IPNs~L~s~~V~N~Sr~~~~ri~v~l~I~y-td~eki~~l~e~L~e~L~s~p~v  301 (653)
                      +.+|+|++|+||+ |++|++||+.++|||+.+  ..+.|||+.. .|..+.++++| +|.+++.++++++.+.+.+.+..
T Consensus       139 ~~~G~V~~I~l~~-T~i~t~d~~~v~iPN~~l--~~i~N~s~~~-~~~~~~v~v~~~~d~~~v~~~l~~i~~~~~~~~~~  214 (285)
T 3udc_A          139 GISGTVEEIGLRV-TKIRGFSDGLHIIPNGEI--KMVTNLTKDS-MMAVVNIAFPIDEDVDKIIEGLQEICEEVKKSRDD  214 (285)
T ss_dssp             TEEEEEEEECSSE-EEEEETTTEEEEEEGGGC--SCEEECSSSC-EEEEEEEEEETTSCHHHHHHHHHHHHHHHHHHCSS
T ss_pred             CEEEEEEEeeeeE-EEEecCCCCEEEeccccc--ccccccCCCC-ceEEEEEeeecCCCHHHHHHHHHHHHHHHHhcccc
Confidence            8999999999999 999999999999999999  4599999854 55568999999 89999888776665555444333


Q ss_pred             cccccceEEEEeecCCCCceEEEEEEEEEecCChHHHHHHHHHHHHHHHHHHHHCCCccCCCcEEEEEee
Q 006257          302 EQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIF  371 (653)
Q Consensus       302 ~~~~~~P~V~v~~~~~~~ssl~i~V~~~v~~~~~~~~~~vr~~I~~~Il~~~~~~GIeia~P~qtV~~~~  371 (653)
                      ..++ +|.+.+.++++  ++++++++||+++.+   ++.++++++.+|+++|+++||++|||+|+|++..
T Consensus       215 ~~~~-~~~v~~~~~~~--s~i~~~v~~~~~~~~---~~~~~~~l~~~I~~~f~~~gI~ipfP~~~v~~~~  278 (285)
T 3udc_A          215 LIEG-PTVLGITDMQD--SKLVIMVYAKTQPMQ---KWAVERDIRYRVKKMFDQKNISFPYPQMDVNFKR  278 (285)
T ss_dssp             BSSC-CEEEEEEEEET--TEEEEEEEEEESTTC---HHHHHHHHHHHHHHHHHHTTCCCCCCCCEEEEEE
T ss_pred             cccC-cccccccccCC--CEEEEEEEEEECcch---HHHHHHHHHHHHHHHHHHCCCcCcCCCEEEEeCc
Confidence            3333 46788999986  799999999997654   5789999999999999999999999999999654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	653
d2vv5a1	67	b.38.1.3 (A:113-179) Mechanosensitive channel prot	1e-11

>d2vv5a1 b.38.1.3 (A:113-179) Mechanosensitive channel protein MscS (YggB), middle domain {Escherichia coli [TaxId: 562]} Length = 67

class: All beta proteins
fold: Sm-like fold
superfamily: Sm-like ribonucleoproteins
family: Mechanosensitive channel protein MscS (YggB), middle domain
domain: Mechanosensitive channel protein MscS (YggB), middle domain
species: Escherichia coli [TaxId: 562]

 Score = 58.2 bits (141), Expect = 1e-11
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 5/68 (7%)

Query: 196 NFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFT 255
           N  +  ++   RPF   E++   + G  V+GTV  V  +S T +R  D + + IPN K  
Sbjct: 5   NLAAGVLLVMFRPFRAGEYV--DLGG--VAGTVLSVQIFS-TTMRTADGKIIVIPNGKII 59

Query: 256 VNVVRNLS 263
              + N S
Sbjct: 60  AGNIINFS 67

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	653
d2vv5a1	67	Mechanosensitive channel protein MscS (YggB), midd	99.76
d2vv5a2	101	Mechanosensitive channel protein MscS (YggB), C-te	99.57
d2vv5a3	86	Mechanosensitive channel protein MscS (YggB), tran	98.85

>d2vv5a1 b.38.1.3 (A:113-179) Mechanosensitive channel protein MscS (YggB), middle domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Sm-like fold
superfamily: Sm-like ribonucleoproteins
family: Mechanosensitive channel protein MscS (YggB), middle domain
domain: Mechanosensitive channel protein MscS (YggB), middle domain
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=2.7e-19  Score=145.84  Aligned_cols=66  Identities=30%  Similarity=0.445  Sum_probs=64.2

Q ss_pred             HHHHHHhhhhhhccCCccCCcEEEEeecCCCeEEEEEEEcceeeEEEEecCCcEEEEeccccccCcEEecc
Q 006257          193 IFTNFLSSAMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGEDREAVHIPNHKFTVNVVRNLS  263 (653)
Q Consensus       193 ~l~Nl~aGi~I~~~rPFrVGD~I~Iki~~~~~~G~VeeIgLrsTT~Irt~dg~~V~IPNs~L~s~~V~N~S  263 (653)
                      +++|++||++|+++|||++||||++    ++..|+|++|+|++ |++|+.||+.++|||+.+.++.|.|||
T Consensus         2 tlsN~~sGi~i~~~~pf~vGD~I~i----~~~~G~V~~I~l~~-T~l~~~dg~~i~iPN~~~~~~~i~N~S   67 (67)
T d2vv5a1           2 SLSNLAAGVLLVMFRPFRAGEYVDL----GGVAGTVLSVQIFS-TTMRTADGKIIVIPNGKIIAGNIINFS   67 (67)
T ss_dssp             HHHHHHHHHHHHTTCSSCTTCEEES----SSCEEEEEEECSSE-EEEECTTSCEEEEEHHHHHTSCEEESS
T ss_pred             cHHHHHHHhhheeeCCccCCCEEEE----CCEEEEEEEEeceE-EEEEccCCCEEEEECHHHcCCccEECc
Confidence            6899999999999999999999999    68999999999999 999999999999999999999999997

>d2vv5a2 d.58.43.1 (A:180-280) Mechanosensitive channel protein MscS (YggB), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Mechanosensitive channel protein MscS (YggB), C-terminal domain
family: Mechanosensitive channel protein MscS (YggB), C-terminal domain
domain: Mechanosensitive channel protein MscS (YggB), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=1.4e-14  Score=125.28  Aligned_cols=97  Identities=11%  Similarity=0.193  Sum_probs=88.3

Q ss_pred             CCCceEEEEEEEeec-CCHHHHHHHHHHHHHHHHcCCCccccccceEEEEeecCCCCceEEEEEEEEEecCChHHHHHHH
Q 006257          264 QKSHWRIKTHLAISH-LDVHKINSIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALLILVSCFVKTSHHEEYLCVK  342 (653)
Q Consensus       264 r~~~~ri~v~l~I~y-td~eki~~l~e~L~e~L~s~p~v~~~~~~P~V~v~~~~~~~ssl~i~V~~~v~~~~~~~~~~vr  342 (653)
                      |.+.+|+.+.++|+| +|++++.+   .+.+++.++|.+..++ .|.|++.++++  +++.+.++||+++.+   |+.++
T Consensus         1 R~~~RR~~~~i~v~y~~d~~~v~~---il~~~~~~~~~v~~~p-~p~v~~~~~~~--s~i~~~v~~w~~~~~---~~~~~   71 (101)
T d2vv5a2           1 REPVRRNEFIIGVAYDSDIDQVKQ---ILTNIIQSEDRILKDR-EMTVRLNELGA--SSINFVVRVWSNSGD---LQNVY   71 (101)
T ss_dssp             SSSEEEEEEEEEECTTSCHHHHHH---HHHHHHHHCTTBCTTS-CEEEEEEEECS--SSEEEEEEEEEETTT---HHHHH
T ss_pred             CCCceEEEEEEEEccCCCHHHHHH---HHHHHHHhChhhhccc-CchhhcccCCC--ceEEEEEEEEecchH---HHHHH
Confidence            456789999999999 89888777   6888899999999988 89999999997  799999999999865   57899


Q ss_pred             HHHHHHHHHHHHHCCCccCCCcEEEEE
Q 006257          343 EAILLDLLRVISHHRARLATPIRTVQK  369 (653)
Q Consensus       343 ~~I~~~Il~~~~~~GIeia~P~qtV~~  369 (653)
                      ++++.+|+++|+++||+||||+|+|++
T Consensus        72 ~~l~~~I~~~l~~~gI~ip~P~~~v~~   98 (101)
T d2vv5a2          72 WDVLERIKREFDAAGISFPYPQMDVNF   98 (101)
T ss_dssp             HHHHHHHHHHHHHHTCCCCCCEEEEEE
T ss_pred             HHHHHHHHHHHHHcCCcCCCCcEEEEE
Confidence            999999999999999999999999985

>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Mechanosensitive channel protein MscS (YggB), transmembrane region
superfamily: Mechanosensitive channel protein MscS (YggB), transmembrane region
family: Mechanosensitive channel protein MscS (YggB), transmembrane region
domain: Mechanosensitive channel protein MscS (YggB), transmembrane region
species: Escherichia coli [TaxId: 562]

Probab=98.85  E-value=6.5e-09  Score=87.12  Aligned_cols=83  Identities=16%  Similarity=0.186  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Q 006257          105 NFVRSLSTVLAFAYCLSSLIQQAQKFFMETTDSGDARNMGFQFAGKAVYSAVWVASASLFMELLGFSTQKWLTAGGLGTV  184 (653)
Q Consensus       105 ~~l~siliIl~i~~~l~~li~~l~~~l~~~~~~~~~~~~~l~~i~~li~v~i~ii~iiviL~~lGv~i~~lLa~lGi~gl  184 (653)
                      +++..++ ++.++|++.++++...+...++..   .++...+++.+++++++|+++++++|+.+|+|++++++++|++|+
T Consensus         4 ~il~~l~-il~i~~~i~~~i~~~~~~~~~~~~---~~~~~~~~i~~~~~~~i~~i~~~~~L~~~Gi~~t~l~a~~G~~gv   79 (86)
T d2vv5a3           4 NIVAALA-IIIVGLIIARMISNAVNRLMISRK---IDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGL   79 (86)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSTTHHHHHHHHHH
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            3444444 456788888888875544444432   234557889999999999999999999999999999999999999


Q ss_pred             HHHHHhh
Q 006257          185 LLTLAGR  191 (653)
Q Consensus       185 aiglA~q  191 (653)
                      ++|||+|
T Consensus        80 aiGfa~Q   86 (86)
T d2vv5a3          80 VVGLALQ   86 (86)
T ss_dssp             HHHHHHT
T ss_pred             HHHHhcC
Confidence            9999998