Citrus Sinensis ID: 006262

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650---
MEQKLNRNQFKSQARLPKFAIPSYYDLYIKLDLVACTFSGNVNININIIEKTNFIVLNALELNVHEVLFTSSHNQEYRPSDAIMDKDDEILVLVFDEPLAVGEGILRIIFYGKLNEHTKGFYKCSYVEKEVKKNMAVTQFEAVDARRCFPCWDEPALKATFKITLDIPSELTALSNMPILDEKLNGNLKTVYFEESPVMSTYLVAFVVGLFDHIEDTTTNGVKVHVYCPVGKSSEGKHALDVAIKSLGIYTEFFSTPYPLPKLDMVAVSEFHAGAMENFGLIVYRENELLYNEKTSTANRKQIMAISTSHEVAHQWFGNLVTMEWWTHLWLNEGFATWISYMATDIMFPEWKMWTQFLRQTSHGLRLDAQEQSHPIEVEVHRADEIDQVFDAISYNKGSAVIRMLQSYLGEDIFQKSLSLYMKKYAWKNVETEDLWSVLSEESGINITSLMECWTKQKGHPVVYVNCKDNLLEFKQSQFVSSGLQGDGRWTIPITLSLGSYNNQRNFLLESQSQSVDISEMLPSSDGKLCSFKECDETLWIKVNVEQSGFYRVIYDDELSARLRKAVENNCLSAADKLGILDDMLALCQACKQPLSYLLLLLDAHRKEHDSMVLSKLINVCYDVVEIITDAMPDAVNELKDFSSVSSNLLLKD
ccccccccccccccccccccccccEEEEEEEEccccEEEEEEEEEEEEEccccEEEEEccccEEEEEEEEcccccccccccEEEccccEEEEEEEcccccccEEEEEEEEEEEEcccccEEEEEEEEEccEEEEEEEEcccccccccccccccccccccEEEEEEEEccccEEEcccccccEEEcccEEEEEEEccccccHHHHHHHccccEEEEEcccccEEEEEEEccccccHHcHHHHHHHHHHHHHHHHcccccccccccEEEccccccccccccccHHHHccccccccccccHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccccccEEEcccHHHHHHcccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHcccccEEEEEEEEccEEEEEEEccccccccccccEEEEEEEEEccccccccEEEccccEEEEccccccccccccccccccccccEEEEccccEEEEEEEccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccc
cccccccccccccccccccEEEEEEEEEEEccccccEEEEEEEEEEEEEccccEEEEEcccEEEEEEEEEccccccccccEEEEcccccEEEEEEccccccccEEEEEEEEEEEcccccEEEEEEEEccccEEEEEEEcccccHHHHHcccccccccEEEEEEEEEEccccEEEccccccccccccccEEEEEcccccccEEEEEEEEHccccEccccccccEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEcccccccHHHcccEEEEEHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcHccccccccHHHHHHHHHHHHHHHHHHHccccEEEEcccHHHHHHHHHHccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccHHHHHHHHHHHccccEEEEEEcccEEEEEEEEEcccccccccEEEEEEEEEEcccccccEEEcccccccEEcccccccccccEEcccccccccEEEEEcccEEEEEEEccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcc
meqklnrnqfksqarlpkfaipsyYDLYIKLDLVACtfsgnvniniNIIEKTNFIVLNALELNVHEVLftsshnqeyrpsdaimdkddEILVLVfdeplavgeGILRIIFYGKlnehtkgfykCSYVEKEVKKNMAVTQFEavdarrcfpcwdepalkaTFKITLDIpseltalsnmpildeklngnlktvyfeespvMSTYLVAFVVGLFdhiedtttngvkvhvycpvgkssegkhALDVAIKSLGIyteffstpyplpkldmvAVSEFHAGAMENFGLIVYRenellynektstanRKQIMAISTSHEVAHQWFGNLVTMEWWTHLWLNEGFATWISYMATDIMFPEWKMWTQFLRQTShglrldaqeqshpieVEVHRADEIDQVFDAISYNKGSAVIRMLQSYLGEDIFQKSLSLYMKKYAWKNVETEDLWSVLSEESGINITSLMECwtkqkghpvvyvNCKDNLLefkqsqfvssglqgdgrwtipitlslgsynnqrnfllesqsqsvdisemlpssdgklcsfkecdeTLWIKVNVEQSGFYRVIYDDELSARLRKAVENNCLSAADKLGILDDMLALCQACKQPLSYLLLLLDAHRKEHDSMVLSKLINVCYDVVEIITDAMPDAVNELKDFSSVSSNLLLKD
meqklnrnqfksqarlpkfAIPSYYDLYIKLDLVACTFSGNVNININIIEKTNFIVLNALELNVHEVLFTSSHNQEYRPSDAIMDKDDEILVLVFDEPLAVGEGILRIIFYGKLNEHTKGFYKCSYVEKEVKKNMAVTQFEAVDARRCFPCWDEPALKATFKITLDIPSELTALSNMPILDEKLNGNLKTVYFEESPVMSTYLVAFVVGLFDHIEDTTTNGVKVHVYCPvgkssegkHALDVAIKSLGIYTEFFSTPYPLPKLDMVAVSEFHAGAMENFGLIVYRENELLYNEKTSTANRKQIMAISTSHEVAHQWFGNLVTMEWWTHLWLNEGFATWISYMATDIMFPEWKMWTQFLRQTSHGLRLDAQEQSHPIEVEVHRADEIDQVFDAISYNKGSAVIRMLQSYLGEDIFQKSLSLYMKKYAWKNVETEDLWSVLSEESGINITSLMECWTKQKGHPVVYVNCKDNLLEFKQSQFVSSGLQGDGRWTIPITLSLGSYNNQRNFLLESQSQSVDISEMLPSSDGKLCSFKECDETLWIKVNVEQSGFYRVIYDDELSARLRKAVENNCLSAADKLGILDDMLALCQACKQPLSYLLLLLDAHRKEHDSMVLSKLINVCYDVVEIITDAMPDAVNelkdfssvssnlllkd
MEQKLNRNQFKSQARLPKFAIPSYYDLYIKLDLVACTFSGNVNININIIEKTNFIVLNALELNVHEVLFTSSHNQEYRPSDAIMDKDDEILVLVFDEPLAVGEGILRIIFYGKLNEHTKGFYKCSYVEKEVKKNMAVTQFEAVDARRCFPCWDEPALKATFKITLDIPSELTALSNMPILDEKLNGNLKTVYFEESPVMSTYLVAFVVGLFDHIEDTTTNGVKVHVYCPVGKSSEGKHALDVAIKSLGIYTEFFSTPYPLPKLDMVAVSEFHAGAMENFGLIVYRENELLYNEKTSTANRKQIMAISTSHEVAHQWFGNLVTMEWWTHLWLNEGFATWISYMATDIMFPEWKMWTQFLRQTSHGLRLDAQEQSHPIEVEVHRADEIDQVFDAISYNKGSAVIRMLQSYLGEDIFQKSLSLYMKKYAWKNVETEDLWSVLSEESGINITSLMECWTKQKGHPVVYVNCKDNLLEFKQSQFVSSGLQGDGRWTIPITLSLGSYNNQRNFLLESQSQSVDISEMLPSSDGKLCSFKECDETLWIKVNVEQSGFYRVIYDDELSARLRKAVENNCLSAADKLGILDDMLALCQACKQPLSYLLLLLDAHRKEHDSMVLSKLINVCYDVVEIITDAMPDAVNELKDFSSVSSNLLLKD
***************LPKFAIPSYYDLYIKLDLVACTFSGNVNININIIEKTNFIVLNALELNVHEVLFTSSHNQEY***DAIMDKDDEILVLVFDEPLAVGEGILRIIFYGKLNEHTKGFYKCSYVEKEVKKNMAVTQFEAVDARRCFPCWDEPALKATFKITLDIPSELTALSNMPILDEKLNGNLKTVYFEESPVMSTYLVAFVVGLFDHIEDTTTNGVKVHVYCPVGKSSEGKHALDVAIKSLGIYTEFFSTPYPLPKLDMVAVSEFHAGAMENFGLIVYRENELLYNEKTSTANRKQIMAISTSHEVAHQWFGNLVTMEWWTHLWLNEGFATWISYMATDIMFPEWKMWTQFLRQTSHGLRLD******PIEVEVHRADEIDQVFDAISYNKGSAVIRMLQSYLGEDIFQKSLSLYMKKYAWKNVETEDLWSVLSEESGINITSLMECWTKQKGHPVVYVNCKDNLLEFKQSQFVSSGLQGDGRWTIPITLSLGSYNNQRNFLL******************KLCSFKECDETLWIKVNVEQSGFYRVIYDDELSARLRKAVENNCLSAADKLGILDDMLALCQACKQPLSYLLLLLDAHRKEHDSMVLSKLINVCYDVVEIITDAMPDAV*****************
*************ARLPKFAIPSYYDLYIKLDLVACTFSGNVNININIIEKTNFIVLNALELNVHEVLFTSSHNQEYRPSDAIMDKDDEILVLVFDEPLAVGEGILRIIFYGKLNEHTKGFYKCSYVEKEVKKNMAVTQFEAVDARRCFPCWDEPALKATFKITLDIPSELTALSNMPILDEKLNGNLKTVYFEESPVMSTYLVAFVVGLFDHIEDTTTNGVKVHVYCPVGKSSEGKHALDVAIKSLGIYTEFFSTPYPLPKLDMVAVSEFHAGAMENFGLIVYRENELLYNEKTSTANRKQIMAISTSHEVAHQWFGNLVTMEWWTHLWLNEGFATWISYMATDIMFPEWKMWTQFLRQTSHGLRLDAQEQSHPIEVEVHRADEIDQVFDAISYNKGSAVIRMLQSYLGEDIFQKSLSLYMKKYAWKNVETEDLWSVLSEESGINITSLMECWTKQKGHPVVYVNCKDNLLEFKQSQFVSSGLQGDGRWTIPITLSLGSYNNQRNFLLESQSQSVDISEMLPSSDGKLCSFKECDETLWIKVNVEQSGFYRVIYDDELSARLRKAVENNCLSAADKLGILDDMLALCQACKQPLSYLLLLLDAHRKEHDSMVLSKLINVCYDVVEIITDAMPDAVNELKDFSSVSSNLLLK*
**********KSQARLPKFAIPSYYDLYIKLDLVACTFSGNVNININIIEKTNFIVLNALELNVHEVLFTSSHNQEYRPSDAIMDKDDEILVLVFDEPLAVGEGILRIIFYGKLNEHTKGFYKCSYVEKEVKKNMAVTQFEAVDARRCFPCWDEPALKATFKITLDIPSELTALSNMPILDEKLNGNLKTVYFEESPVMSTYLVAFVVGLFDHIEDTTTNGVKVHVYCPVGKSSEGKHALDVAIKSLGIYTEFFSTPYPLPKLDMVAVSEFHAGAMENFGLIVYRENELLYNEKTSTANRKQIMAISTSHEVAHQWFGNLVTMEWWTHLWLNEGFATWISYMATDIMFPEWKMWTQFLRQTSHGLRLDAQEQSHPIEVEVHRADEIDQVFDAISYNKGSAVIRMLQSYLGEDIFQKSLSLYMKKYAWKNVETEDLWSVLSEESGINITSLMECWTKQKGHPVVYVNCKDNLLEFKQSQFVSSGLQGDGRWTIPITLSLGSYNNQRNFLLESQSQSVDISEMLPSSDGKLCSFKECDETLWIKVNVEQSGFYRVIYDDELSARLRKAVENNCLSAADKLGILDDMLALCQACKQPLSYLLLLLDAHRKEHDSMVLSKLINVCYDVVEIITDAMPDAVNELKDFSSVSSNLLLKD
*********FKSQARLPKFAIPSYYDLYIKLDLVACTFSGNVNININIIEKTNFIVLNALELNVHEVLFTSSHNQEYRPSDAIMDKDDEILVLVFDEPLAVGEGILRIIFYGKLNEHTKGFYKCSYVEKEVKKNMAVTQFEAVDARRCFPCWDEPALKATFKITLDIPSELTALSNMPILDEKLNGNLKTVYFEESPVMSTYLVAFVVGLFDHIEDTTTNGVKVHVYCPVGKSSEGKHALDVAIKSLGIYTEFFSTPYPLPKLDMVAVSEFHAGAMENFGLIVYRENELLYNEKTSTANRKQIMAISTSHEVAHQWFGNLVTMEWWTHLWLNEGFATWISYMATDIMFPEWKMWTQFLRQTSHGLRLDAQEQSHPIEVEVHRADEIDQVFDAISYNKGSAVIRMLQSYLGEDIFQKSLSLYMKKYAWKNVETEDLWSVLSEESGINITSLMECWTKQKGHPVVYVNCKDNLLEFKQSQFVSSGLQGDGRWTIPITLSLGSYNNQRNFLLESQSQSVDISEMLPSSDGKLCSFKECDETLWIKVNVEQSGFYRVIYDDELSARLRKAVENNCLSAADKLGILDDMLALCQACKQPLSYLLLLLDAHRKEHDSMVLSKLINVCYDVVEIITDAMPDAVNELKDFSSVSSNLLLKD
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MEQKLNRNQFKSQARLPKFAIPSYYDLYIKLDLVACTFSGNVNININIIEKTNFIVLNALELNVHEVLFTSSHNQEYRPSDAIMDKDDEILVLVFDEPLAVGEGILRIIFYGKLNEHTKGFYKCSYVEKEVKKNMAVTQFEAVDARRCFPCWDEPALKATFKITLDIPSELTALSNMPILDEKLNGNLKTVYFEESPVMSTYLVAFVVGLFDHIEDTTTNGVKVHVYCPVGKSSEGKHALDVAIKSLGIYTEFFSTPYPLPKLDMVAVSEFHAGAMENFGLIVYRENELLYNEKTSTANRKQIMAISTSHEVAHQWFGNLVTMEWWTHLWLNEGFATWISYMATDIMFPEWKMWTQFLRQTSHGLRLDAQEQSHPIEVEVHRADEIDQVFDAISYNKGSAVIRMLQSYLGEDIFQKSLSLYMKKYAWKNVETEDLWSVLSEESGINITSLMECWTKQKGHPVVYVNCKDNLLEFKQSQFVSSGLQGDGRWTIPITLSLGSYNNQRNFLLESQSQSVDISEMLPSSDGKLCSFKECDETLWIKVNVEQSGFYRVIYDDELSARLRKAVENNCLSAADKLGILDDMLALCQACKQPLSYLLLLLDAHRKEHDSMVLSKLINVCYDVVEIITDAMPDAVNELKDFSSVSSNLLLKD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query653 2.2.26 [Sep-21-2011]
Q11011 920 Puromycin-sensitive amino yes no 0.901 0.640 0.423 1e-142
P55786 919 Puromycin-sensitive amino yes no 0.901 0.640 0.419 1e-141
Q59KZ1 924 Aminopeptidase 2 OS=Candi N/A no 0.889 0.628 0.393 1e-117
P32454 952 Aminopeptidase 2, mitocho yes no 0.898 0.616 0.380 1e-115
P37898 856 Alanine/arginine aminopep no no 0.929 0.709 0.380 1e-114
A6NEC2478 Puromycin-sensitive amino no no 0.644 0.880 0.467 1e-111
Q9USX1 882 Aminopeptidase 1 OS=Schiz yes no 0.906 0.671 0.377 1e-109
P97629 1025 Leucyl-cystinyl aminopept no no 0.918 0.585 0.352 1e-102
Q9NZ08 941 Endoplasmic reticulum ami no no 0.862 0.598 0.330 1e-100
Q9JJ22 930 Endoplasmic reticulum ami no no 0.935 0.656 0.316 1e-100
>sp|Q11011|PSA_MOUSE Puromycin-sensitive aminopeptidase OS=Mus musculus GN=Npepps PE=1 SV=2 Back     alignment and function desciption
 Score =  506 bits (1304), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 261/617 (42%), Positives = 371/617 (60%), Gaps = 28/617 (4%)

Query: 15  RLPKFAIPSYYDLYIKLDLVACTFSGNVNININIIEKTNFIVLNALELNVHEVLFTSSHN 74
           RLP    P  Y L +K DL+  TF G +     + + TN IV+N  ++++    +    +
Sbjct: 54  RLPAEVSPINYSLCLKPDLLDFTFEGKLEAAAQVRQATNQIVMNCADIDIITASYAPEGD 113

Query: 75  QEYRPSDAIMDKDDEILVLVFDEPLAVGEGILRIIFYGKLNEHTKGFYKCSYVEKEVK-K 133
           +E   +      +DE + L F   L  G G L+I F G+LN+  KGFY+  Y     + +
Sbjct: 114 EEIHATGFNYQNEDEKVTLSFPSTLQTGTGTLKIDFVGELNDKMKGFYRSRYTTPAGEVR 173

Query: 134 NMAVTQFEAVDARRCFPCWDEPALKATFKITLDIPSELTALSNMPILDEKL---NGNLKT 190
             AVTQFEA DARR FPCWDEPA+KATF I+L +P +  ALSNM ++D K    + NL  
Sbjct: 174 YAAVTQFEATDARRAFPCWDEPAIKATFDISLVVPKDRVALSNMNVIDRKPYPDDENLVE 233

Query: 191 VYFEESPVMSTYLVAFVVGLFDHIEDTTTNGVKVHVYCPVGKSSEGKHALDVAIKSLGIY 250
           V F  +PVMSTYLVAFVVG +D +E  + +GV V VY PVGK+ +GK AL+VA K+L  Y
Sbjct: 234 VKFARTPVMSTYLVAFVVGEYDFVETRSKDGVCVRVYTPVGKAEQGKFALEVAAKTLPFY 293

Query: 251 TEFFSTPYPLPKLDMVAVSEFHAGAMENFGLIVYRENELLYNEKTSTANRKQIMAISTSH 310
            ++F+ PYPLPK+D++A+++F AGAMEN+GL+ YRE  LL + K S ++ +Q +A+   H
Sbjct: 294 KDYFNVPYPLPKIDLIAIADFAAGAMENWGLVTYRETALLIDPKNSCSSSRQWVALVVGH 353

Query: 311 EVAHQWFGNLVTMEWWTHLWLNEGFATWISYMATDIMFPEWKMWTQFLRQT-SHGLRLDA 369
           E+AHQWFGNLVTMEWWTHLWLNEGFA+WI Y+  D  FPE+ +WTQF+    +    LDA
Sbjct: 354 ELAHQWFGNLVTMEWWTHLWLNEGFASWIEYLCVDHCFPEYDIWTQFVSADYTRAQELDA 413

Query: 370 QEQSHPIEVEVHRADEIDQVFDAISYNKGSAVIRMLQSYLGEDIFQKSLSLYMKKYAWKN 429
            + SHPIEV V    E+D++FDAISY+KG++VIRML  Y+G+  F+K +++Y+ K+  KN
Sbjct: 414 LDNSHPIEVSVGHPSEVDEIFDAISYSKGASVIRMLHDYIGDKDFKKGMNMYLTKFQQKN 473

Query: 430 VETEDLWSVLSEESGINITSLMECWTKQKGHPVVYVNCK----DNLLEFKQSQFVSSGLQ 485
             TEDLW  L   SG  I ++M  WTKQ G P++YV  +    D +L+  Q +F +SG  
Sbjct: 474 AATEDLWESLESASGKPIAAVMNTWTKQMGFPLIYVEAEQVEDDRVLKLSQKKFCASGPY 533

Query: 486 GD---GRWTIPITLSLGSYNNQRNF--LLESQSQSVDISEMLPSSDGKLCSFKECDETLW 540
           G     +W +PIT+S     NQ     L++    SV +  + P                W
Sbjct: 534 GGEDCPQWMVPITISTSEDPNQAKLKILMDKPEMSVVLKNVKPDQ--------------W 579

Query: 541 IKVNVEQSGFYRVIYDDELSARLRKAVENNCLSAADKLGILDDMLALCQACKQPLSYLLL 600
           +K+N+   GFYR  Y   +   L   + +  L   D+LG+ +D+ +L +A       +L 
Sbjct: 580 VKLNLGTVGFYRTQYSSAMLESLLPGIRDLSLPPVDRLGLQNDLFSLARAGIISTVEVLK 639

Query: 601 LLDAHRKEHDSMVLSKL 617
           +++A   E +  V S L
Sbjct: 640 VMEAFVNEPNYTVWSDL 656
Aminopeptidase with broad substrate specificity for several peptides. Involved in proteolytic events essential for cell growth and viability. May act as regulator of neuropeptide activity. Plays a role in the antigen-processing pathway for MHC class I molecules. Involved in the N-terminal trimming of cytotoxic T-cell epitope precursors. Digests the poly-Q peptides found in many cellular proteins.
Mus musculus (taxid: 10090)
EC: 3EC: .EC: 4EC: .EC: 1EC: 1EC: .EC: 1EC: 4
>sp|P55786|PSA_HUMAN Puromycin-sensitive aminopeptidase OS=Homo sapiens GN=NPEPPS PE=1 SV=2 Back     alignment and function description
>sp|Q59KZ1|APE2_CANAL Aminopeptidase 2 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=APE2 PE=1 SV=2 Back     alignment and function description
>sp|P32454|APE2_YEAST Aminopeptidase 2, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=APE2 PE=1 SV=4 Back     alignment and function description
>sp|P37898|AAP1_YEAST Alanine/arginine aminopeptidase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AAP1 PE=1 SV=2 Back     alignment and function description
>sp|A6NEC2|PSAL_HUMAN Puromycin-sensitive aminopeptidase-like protein OS=Homo sapiens GN=NPEPPSL1 PE=2 SV=3 Back     alignment and function description
>sp|Q9USX1|APE1_SCHPO Aminopeptidase 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ape1 PE=3 SV=1 Back     alignment and function description
>sp|P97629|LCAP_RAT Leucyl-cystinyl aminopeptidase OS=Rattus norvegicus GN=Lnpep PE=1 SV=1 Back     alignment and function description
>sp|Q9NZ08|ERAP1_HUMAN Endoplasmic reticulum aminopeptidase 1 OS=Homo sapiens GN=ERAP1 PE=1 SV=3 Back     alignment and function description
>sp|Q9JJ22|ERAP1_RAT Endoplasmic reticulum aminopeptidase 1 OS=Rattus norvegicus GN=Erap1 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query653
224132618 888 predicted protein [Populus trichocarpa] 0.983 0.722 0.688 0.0
225442239 889 PREDICTED: puromycin-sensitive aminopept 0.983 0.722 0.650 0.0
357513839 887 Aminopeptidase N [Medicago truncatula] g 0.981 0.722 0.625 0.0
297743057 863 unnamed protein product [Vitis vinifera] 0.937 0.709 0.612 0.0
449458223 881 PREDICTED: puromycin-sensitive aminopept 0.964 0.715 0.625 0.0
307135866 883 aminopeptidase [Cucumis melo subsp. melo 0.961 0.711 0.613 0.0
225429582 880 PREDICTED: puromycin-sensitive aminopept 0.966 0.717 0.582 0.0
147772895 880 hypothetical protein VITISV_012143 [Viti 0.966 0.717 0.580 0.0
357465783 876 Puromycin-sensitive aminopeptidase [Medi 0.964 0.719 0.578 0.0
449486688 886 PREDICTED: LOW QUALITY PROTEIN: puromyci 0.967 0.713 0.579 0.0
>gi|224132618|ref|XP_002327840.1| predicted protein [Populus trichocarpa] gi|222837249|gb|EEE75628.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  959 bits (2478), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/648 (68%), Positives = 538/648 (83%), Gaps = 6/648 (0%)

Query: 1   MEQKLNRNQFKSQARLPKFAIPSYYDLYIKLDLVACTFSGNVNININIIEKTNFIVLNAL 60
           ME+  N  QFK Q RLPKFAIP  YDL++K DL  CTFSG + IN+ IIE T F+VLNAL
Sbjct: 1   MERNQNIKQFKGQTRLPKFAIPDRYDLHLKPDLSVCTFSGTICINLRIIEPTKFVVLNAL 60

Query: 61  ELNVHEVLFTSSHNQE-YRPSDAIMDKDDEILVLVFDEPLAVGEGILRIIFYGKLNEHTK 119
           ELN+H VLFT S NQ+ + P D ++D DDEIL+LVF+E L  G+GILRI F G LNEH +
Sbjct: 61  ELNIHGVLFTDSQNQQQFSPCDIVLDDDDEILMLVFEEALNAGDGILRIDFSGILNEHLR 120

Query: 120 GFYKCSYVEKEVKKNMAVTQFEAVDARRCFPCWDEPALKATFKITLDIPSELTALSNMPI 179
           GFY+C+Y++ E KKNMAVTQFEAVDARRCFPCWDEPALKATFKIT+D+P EL ALSNMPI
Sbjct: 121 GFYRCTYMDGEEKKNMAVTQFEAVDARRCFPCWDEPALKATFKITIDLPLELIALSNMPI 180

Query: 180 LDEKLNGNLKTVYFEESPVMSTYLVAFVVGLFDHIEDTTTNGVKVHVYCPVGKSSEGKHA 239
           +DEKL GN+KTVYF+ESP+MSTYLVA V+GLFD++EDTT +GVKV VYCP+G+++EGK+A
Sbjct: 181 IDEKLTGNVKTVYFDESPLMSTYLVAVVIGLFDYVEDTTADGVKVRVYCPLGQANEGKYA 240

Query: 240 LDVAIKSLGIYTEFFSTPYPLPKLDMVAVSEFHAGAMENFGLIVYRENELLYNEKTSTAN 299
           L +A+++L ++ E+FS PYPLPKLDMVAV EF  GAMEN+GLI+YRENELLY++  STA 
Sbjct: 241 LSIAVRALDLFAEYFSMPYPLPKLDMVAVPEFSGGAMENYGLIIYRENELLYDDLQSTAA 300

Query: 300 RKQIMAISTSHEVAHQWFGNLVTMEWWTHLWLNEGFATWISYMATDIMFPEWKMWTQFLR 359
           RKQIM I   HEVAH WFGNLVTMEWWTHLWLNEGFATWISYMATD +FPEWK+WT+FL+
Sbjct: 301 RKQIMTIVVMHEVAHHWFGNLVTMEWWTHLWLNEGFATWISYMATDGLFPEWKIWTRFLQ 360

Query: 360 QTSHGLRLDAQEQSHPIEVEVHRADEIDQVFDAISYNKGSAVIRMLQSYLGEDIFQKSLS 419
           QT+ GLR+DA E SHPIEVEVH+A  ++++FDAISY KGSAVIRMLQ YLG+DI QK+LS
Sbjct: 361 QTTGGLRVDALEGSHPIEVEVHQARSVNEIFDAISYKKGSAVIRMLQGYLGDDILQKALS 420

Query: 420 LYMKKYAWKNVETEDLWSVLSEESGINITSLMECWTKQKGHPVVYVNCKDNLLEFKQSQF 479
            YM+KYAWKN +TEDLWSVLSEESGI +  +M+CWTK+KG+PV+ V  +D+ LEF+QSQF
Sbjct: 421 SYMEKYAWKNAKTEDLWSVLSEESGIQVNKMMDCWTKKKGYPVISVKSEDHFLEFEQSQF 480

Query: 480 VSSGLQGDGRWTIPITLSLGSYNNQRNFLLESQSQSVDISEMLPSSDGKLCSFKE----- 534
           +SSGL G+G+W +PITL LGSYN ++NFLLES+ + VD+SE+  SSDG   SF E     
Sbjct: 481 LSSGLHGEGKWIVPITLFLGSYNRRKNFLLESKFEKVDVSELFSSSDGYSGSFNEANEEK 540

Query: 535 CDETLWIKVNVEQSGFYRVIYDDELSARLRKAVENNCLSAADKLGILDDMLALCQACKQP 594
           C E +W+KVNVEQSGFYRV Y+D+L+A+LRKAVE NCL A DK G+LDD  ALCQAC+  
Sbjct: 541 CSEFVWVKVNVEQSGFYRVKYEDKLAAQLRKAVEKNCLLATDKFGVLDDAFALCQACEIS 600

Query: 595 LSYLLLLLDAHRKEHDSMVLSKLINVCYDVVEIITDAMPDAVNELKDF 642
           +S LL L+D +RKE D  VLSKLI+VCY VVEI  DA+PDAVNELK F
Sbjct: 601 ISSLLSLMDVYRKELDYAVLSKLIDVCYSVVEISIDAIPDAVNELKTF 648

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225442239|ref|XP_002274941.1| PREDICTED: puromycin-sensitive aminopeptidase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|357513839|ref|XP_003627208.1| Aminopeptidase N [Medicago truncatula] gi|355521230|gb|AET01684.1| Aminopeptidase N [Medicago truncatula] Back     alignment and taxonomy information
>gi|297743057|emb|CBI35924.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449458223|ref|XP_004146847.1| PREDICTED: puromycin-sensitive aminopeptidase-like [Cucumis sativus] gi|449476886|ref|XP_004154865.1| PREDICTED: puromycin-sensitive aminopeptidase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|307135866|gb|ADN33734.1| aminopeptidase [Cucumis melo subsp. melo] Back     alignment and taxonomy information
>gi|225429582|ref|XP_002280239.1| PREDICTED: puromycin-sensitive aminopeptidase [Vitis vinifera] gi|296081675|emb|CBI20680.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147772895|emb|CAN73668.1| hypothetical protein VITISV_012143 [Vitis vinifera] Back     alignment and taxonomy information
>gi|357465783|ref|XP_003603176.1| Puromycin-sensitive aminopeptidase [Medicago truncatula] gi|355492224|gb|AES73427.1| Puromycin-sensitive aminopeptidase [Medicago truncatula] Back     alignment and taxonomy information
>gi|449486688|ref|XP_004157369.1| PREDICTED: LOW QUALITY PROTEIN: puromycin-sensitive aminopeptidase-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query653
TAIR|locus:2125904 879 APM1 "aminopeptidase M1" [Arab 0.967 0.718 0.570 1.2e-198
FB|FBgn0261243 1075 Psa "Puromycin sensitive amino 0.944 0.573 0.422 4.7e-135
ZFIN|ZDB-GENE-060524-3 925 npepps "aminopeptidase puromyc 0.901 0.636 0.423 1.5e-131
MGI|MGI:1101358 920 Npepps "aminopeptidase puromyc 0.949 0.673 0.416 4.5e-130
UNIPROTKB|F1M9V7 920 Npepps "Protein Npepps" [Rattu 0.949 0.673 0.416 7.3e-130
UNIPROTKB|E9PLK3 915 NPEPPS "Puromycin-sensitive am 0.950 0.678 0.412 1.9e-129
UNIPROTKB|P55786 919 NPEPPS "Puromycin-sensitive am 0.950 0.675 0.412 1.9e-129
UNIPROTKB|E1BP91 921 NPEPPS "Uncharacterized protei 0.950 0.674 0.409 2.5e-129
UNIPROTKB|F1RWJ6 923 LOC414413 "Uncharacterized pro 0.950 0.672 0.411 1.7e-128
UNIPROTKB|F1P7M0 860 NPEPPS "Uncharacterized protei 0.903 0.686 0.412 3.9e-124
TAIR|locus:2125904 APM1 "aminopeptidase M1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1923 (682.0 bits), Expect = 1.2e-198, P = 1.2e-198
 Identities = 365/640 (57%), Positives = 479/640 (74%)

Query:     8 NQFKSQARLPKFAIPSYYDLYIKLDLVACTFSGNVNININIIEKTNFIVLNALELNVHE- 66
             +QFK + RLPKFA+P  YDL +  DL+ACTF+G V I+++I+  T FIVLNA +L+V++ 
Sbjct:     2 DQFKGEPRLPKFAVPKRYDLRLNPDLIACTFTGTVAIDLDIVADTRFIVLNAADLSVNDA 61

Query:    67 -VLFTS-SHNQEYRPSDAIMDKDDEILVLVFDEPLAVGEGILRIIFYGKLNEHTKGFYKC 124
              V FT  S ++       ++ ++DEILVL F E L  G G+L++ F G LN+  KGFY+ 
Sbjct:    62 SVSFTPPSSSKALAAPKVVLFEEDEILVLEFGEILPHGVGVLKLGFNGVLNDKMKGFYRS 121

Query:   125 SYVEKEVKKNMAVTQFEAVDARRCFPCWDEPALKATFKITLDIPSELTALSNMPILDEKL 184
             +Y     KKNMAVTQFE  DARRCFPCWDEPA KATFKITL++P++L ALSNMPI++EK+
Sbjct:   122 TYEHNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLEVPTDLVALSNMPIMEEKV 181

Query:   185 NGNLKTVYFEESPVMSTYLVAFVVGLFDHIEDTTTNGVKVHVYCPVGKSSEGKHALDVAI 244
             NGNLK V ++ESP+MSTYLVA VVGLFD++ED T++G+KV VYC VGK+ +GK AL V  
Sbjct:   182 NGNLKIVSYQESPIMSTYLVAIVVGLFDYVEDHTSDGIKVRVYCQVGKADQGKFALHVGA 241

Query:   245 KSLGIYTEFFSTPYPLPKLDMVAVSEFHAGAMENFGLIVYRENELLYNEKTSTANRKQIM 304
             K+L ++ E+F+ PYPLPK+DM+A+ +F AGAMEN+GL+ YRE  LLY+E+ S A+ KQ +
Sbjct:   242 KTLDLFKEYFAVPYPLPKMDMIAIPDFAAGAMENYGLVTYRETALLYDEQHSAASNKQRV 301

Query:   305 AISTSHEVAHQWFGNLVTMEWWTHLWLNEGFATWISYMATDIMFPEWKMWTQFLRQTSHG 364
             A   +HE+AHQWFGNLVTMEWWTHLWLNEGFATW+SY+ATD +FPEWK+WTQFL +++ G
Sbjct:   302 ATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLATDSLFPEWKIWTQFLDESTEG 361

Query:   365 LRLDAQEQSHPIEVEVHRADEIDQVFDAISYNKGSAVIRMLQSYLGEDIFQKSLSLYMKK 424
             LRLD  E+SHPIEVEV+ A EID++FDAISY KG++VIRMLQSYLG ++FQKSL+ Y+K 
Sbjct:   362 LRLDGLEESHPIEVEVNHAAEIDEIFDAISYRKGASVIRMLQSYLGAEVFQKSLAAYIKN 421

Query:   425 YAWKNVETEDLWSVLSEESGINITSLMECWTKQKGHPVVYVNCKDNLLEFKQSQFVSSGL 484
             +A+ N +TEDLW+ L   SG  +  LM  WTKQKG+PVV    KD  LE +QS+F+SSG 
Sbjct:   422 HAYSNAKTEDLWAALEAGSGEPVNKLMSSWTKQKGYPVVSAKIKDGKLELEQSRFLSSGS 481

Query:   485 QGDGRWTIPITLSLGSYNNQRNFLLESQSQSVDISEMLPSS--DGKLCSFKECDETLWIK 542
              G+G+W +P+TL  GSY  ++NFLLES+S + D+ E+L  S  DG   S K      WIK
Sbjct:   482 PGEGQWIVPVTLCCGSYEKRKNFLLESKSGAYDLKELLGCSIADG---SDKINGTCSWIK 538

Query:   543 VNVEQSGFYRVIYDDELSARLRKAVENNCLSAADKLGILDDMLALCQACKQPLSYLLLLL 602
             +NV+Q+GFYRV YDD L+A LR A E+  L++ D+ GILDD  AL  A +Q L+ LL L 
Sbjct:   539 INVDQAGFYRVKYDDSLAAGLRNATESQSLTSIDRYGILDDSFALTMARQQSLASLLTLC 598

Query:   603 DAHRKEHDSMVLSKLINVCYDVVEIITDAMPDAVNELKDF 642
              A++KE D  VLS LI + Y VV+I  DA  + ++ +K F
Sbjct:   599 SAYKKELDYTVLSNLIAISYKVVKIGADANQELMSGIKHF 638
GO:0004177 "aminopeptidase activity" evidence=IEA;IDA
GO:0005634 "nucleus" evidence=ISM
GO:0006508 "proteolysis" evidence=IEA
GO:0008237 "metallopeptidase activity" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0005886 "plasma membrane" evidence=IDA
GO:0009926 "auxin polar transport" evidence=TAS
GO:0005829 "cytosol" evidence=IDA
GO:0006094 "gluconeogenesis" evidence=RCA
GO:0007010 "cytoskeleton organization" evidence=RCA
GO:0010359 "regulation of anion channel activity" evidence=RCA
GO:0010498 "proteasomal protein catabolic process" evidence=RCA
FB|FBgn0261243 Psa "Puromycin sensitive aminopeptidase" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060524-3 npepps "aminopeptidase puromycin sensitive" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:1101358 Npepps "aminopeptidase puromycin sensitive" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1M9V7 Npepps "Protein Npepps" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E9PLK3 NPEPPS "Puromycin-sensitive aminopeptidase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P55786 NPEPPS "Puromycin-sensitive aminopeptidase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1BP91 NPEPPS "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1RWJ6 LOC414413 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1P7M0 NPEPPS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.11.14LOW CONFIDENCE prediction!
3rd Layer3.4.110.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query653
cd09601446 cd09601, M1_APN_2, Peptidase M1 Aminopeptidase N f 0.0
pfam01433390 pfam01433, Peptidase_M1, Peptidase family M1 1e-153
COG0308 859 COG0308, PepN, Aminopeptidase N [Amino acid transp 1e-136
cd09602438 cd09602, M1_APN_3, Peptidase M1 family containing 7e-97
TIGR02412 831 TIGR02412, pepN_strep_liv, aminopeptidase N, Strep 3e-72
cd09603415 cd09603, M1_APN_4, Peptidase M1 family Aminopeptid 6e-71
cd09595407 cd09595, M1, Peptidase M1 family contains aminopep 3e-61
cd09604435 cd09604, M1_APN_5, Peptidase M1 family containing 1e-35
TIGR02414 863 TIGR02414, pepN_proteo, aminopeptidase N, Escheric 1e-35
cd09600 861 cd09600, M1_APN_1, Peptidase M1 family containing 7e-33
cd09599442 cd09599, M1_LTA4H, Peptidase M1 family contains le 8e-29
TIGR02411602 TIGR02411, leuko_A4_hydro, leukotriene A-4 hydrola 4e-23
cd09839507 cd09839, M1_TAF2, TATA binding protein (TBP) assoc 1e-19
PRK14015 875 PRK14015, pepN, aminopeptidase N; Provisional 2e-18
pfam13485128 pfam13485, Peptidase_MA_2, Peptidase MA superfamil 2e-15
pfam11838 323 pfam11838, DUF3358, Domain of unknown function (DU 4e-10
>gnl|CDD|189008 cd09601, M1_APN_2, Peptidase M1 Aminopeptidase N family incudes tricorn interacting factor F3, Endoplasmic reticulum aminopeptidase 1 (ERAP1), Aminopeptidase Q (APQ) Back     alignment and domain information 
 Score =  633 bits (1635), Expect = 0.0
 Identities = 224/444 (50%), Positives = 294/444 (66%), Gaps = 7/444 (1%)

Query: 25  YDLYIKLDLVACTFSGNVNININIIEKTNFIVLNALELNVHEVLFTSSHNQEYRPSDAIM 84
           YDL +  DL   TFSG+V I + + E TN IVL+A +L +     T              
Sbjct: 3   YDLTLTPDLDNFTFSGSVTITLEVTEPTNEIVLHAKDLTITSATVTVGGGNVDILVTITY 62

Query: 85  DKDDEILVLVFDEPLAV--GEGILRIIFYGKLNEHTKGFYKCSYVEK-EVKKNMAVTQFE 141
            +++E LV+  DEPL +  G   L I F G+LN+  +GFY+ SY +     + +A TQFE
Sbjct: 63  SEENEFLVITLDEPLTLAGGNYTLTIEFTGELNDDLRGFYRSSYTDNGGETRYLAATQFE 122

Query: 142 AVDARRCFPCWDEPALKATFKITLDIPSELTALSNMPILDEK-LNGNLKTVYFEESPVMS 200
             DARR FPC+DEPA KATF IT+  P+  TALSNMP+  E+ L    KT  FE +P MS
Sbjct: 123 PTDARRAFPCFDEPAFKATFTITITHPAGYTALSNMPVESEEVLGDGWKTTEFETTPPMS 182

Query: 201 TYLVAFVVGLFDHIEDTTTNGVKVHVYCPVGKSSEGKHALDVAIKSLGIYTEFFSTPYPL 260
           TYLVAFVVG FD++E TT NGV V VY   GK  +G +AL+VA K L  + ++F  PYPL
Sbjct: 183 TYLVAFVVGDFDYVEGTTKNGVPVRVYARPGKIEQGDYALEVAPKILEFFEDYFGIPYPL 242

Query: 261 PKLDMVAVSEFHAGAMENFGLIVYRENELLYNEKTSTANRKQIMAISTSHEVAHQWFGNL 320
           PKLD+VA+ +F AGAMEN+GLI YRE  LLY+ KTS+A+ KQ +A   +HE+AHQWFGNL
Sbjct: 243 PKLDLVAIPDFAAGAMENWGLITYRETALLYDPKTSSASNKQRVATVVAHELAHQWFGNL 302

Query: 321 VTMEWWTHLWLNEGFATWISYMATDIMFPEWKMWTQFLRQTSHG-LRLDAQEQSHPIEVE 379
           VTM+WW  LWLNEGFAT++ Y+  D + PEW MW QF+       L LD+   SHPI V 
Sbjct: 303 VTMKWWDDLWLNEGFATYMEYLGVDHLEPEWNMWDQFVLDDLQSALALDSLASSHPISVP 362

Query: 380 VHRADEIDQVFDAISYNKGSAVIRMLQSYLGEDIFQKSLSLYMKKYAWKNVETEDLWSVL 439
           V   DEI ++FDAISY+KG++V+RML+ +LGE++F+K L  Y+KK+A+ N  T+DLW  L
Sbjct: 363 VETPDEISEIFDAISYSKGASVLRMLEHFLGEEVFRKGLRNYLKKHAYGNATTDDLWEAL 422

Query: 440 SEES--GINITSLMECWTKQKGHP 461
           SE S  G ++  +M+ WT Q G+P
Sbjct: 423 SEASKLGKDVKEIMDTWTLQPGYP 446

This M1 peptidase family includes eukaryotic and bacterial members: aminopeptidase N (APN), aminopeptidase Q (APQ, laeverin), endoplasmic reticulum aminopeptidase 1 (ERAP1) as well as tricorn interacting factor F3. Aminopeptidase N (APN; CD13; Alanyl aminopeptidase; EC 3.4.11.2), a Type II integral membrane protease, consists of a small N-terminal cytoplasmic domain, a single transmembrane domain and a large extracellular ectodomain that contains the active site. It preferentially cleaves neutral amino acids from the N-terminus of oligopeptides and is present in a variety of human tissues and cell types (leukocyte, fibroblast, endothelial and epithelial cells). APN expression is dysregulated in inflammatory diseases such as chronic pain, rheumatoid arthritis, multiple sclerosis, systemic sclerosis, systemic lupus erythematosus, polymyositis/dermatomyosytis and pulmonary sarcoidosis, and is enhanced in tumor cells such as melanoma, renal, prostate, pancreas, colon, gastric and thyroid cancers. It is considered a marker of differentiation since it is predominantly expressed on stem cells and on cells of the granulocytic and monocytic lineages at distinct stages of differentiation. Thus, APN inhibition may lead to the development of anti-cancer and anti-inflammatory drugs. ERAP1 also known as endoplasmic reticulum aminopeptidase associated with antigen processing (ERAAP), adipocyte derived leucine aminopeptidase (A-LAP) or aminopeptidase regulating tumor necrosis factor receptor I (THFRI) shedding (ARTS-1), associates with the closely related ER aminopeptidase ERAP2, for the final trimming of peptides within the ER for presentation by MHC class I molecules. ERAP1 is associated with ankylosing spondylitis (AS), an inflammatory arthritis that predominantly affects the spine. ERAP1 also aids in the shedding of membrane-bound cytokine receptors. The tricorn interacting factor F3, together with factors F1 and F2, degrades the tricorn protease products, producing free amino acids, thus completing the proteasomal degradation pathway. F3 is homologous to F2, but not F1, and shows a strong preference for glutamate in the P1' position. APQ, also known as laeverin, is specifically expressed in human embryo-derived extravillous trophoblasts (EVTs) that invade the uterus during early placentation. It cleaves the N-terminal amino acid of various peptides such as angiotensin III, endokinin C, and kisspeptin-10, all expressed in the placenta in large quantities. APN is a receptor for coronaviruses, although the virus receptor interaction site seems to be distinct from the enzymatic site and aminopeptidase activity is not necessary for viral infection. APNs are also putative Cry toxin receptors. Cry1 proteins are pore-forming toxins that bind to the midgut epithelial cell membrane of susceptible insect larvae, causing extensive damage. Several different toxins, including Cry1Aa, Cry1Ab, Cry1Ac, Cry1Ba, Cry1Ca and Cry1Fa, have been shown to bind to APNs; however, a direct role of APN in cytotoxicity has been yet to be firmly established. Length = 446
>gnl|CDD|216501 pfam01433, Peptidase_M1, Peptidase family M1 Back     alignment and domain information
>gnl|CDD|223385 COG0308, PepN, Aminopeptidase N [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|189009 cd09602, M1_APN_3, Peptidase M1 family containing Aminopeptidase N Back     alignment and domain information
>gnl|CDD|233857 TIGR02412, pepN_strep_liv, aminopeptidase N, Streptomyces lividans type Back     alignment and domain information
>gnl|CDD|189010 cd09603, M1_APN_4, Peptidase M1 family Aminopeptidase N Back     alignment and domain information
>gnl|CDD|189002 cd09595, M1, Peptidase M1 family contains aminopeptidase N and leukotriene A4 hydrolase Back     alignment and domain information
>gnl|CDD|189011 cd09604, M1_APN_5, Peptidase M1 family containing bacterial Aminopeptidase N Back     alignment and domain information
>gnl|CDD|233858 TIGR02414, pepN_proteo, aminopeptidase N, Escherichia coli type Back     alignment and domain information
>gnl|CDD|189007 cd09600, M1_APN_1, Peptidase M1 family containing Aminopeptidase N Back     alignment and domain information
>gnl|CDD|189006 cd09599, M1_LTA4H, Peptidase M1 family contains leukotriene A4 hydrolase Back     alignment and domain information
>gnl|CDD|233856 TIGR02411, leuko_A4_hydro, leukotriene A-4 hydrolase/aminopeptidase Back     alignment and domain information
>gnl|CDD|189018 cd09839, M1_TAF2, TATA binding protein (TBP) associated factor 2 Back     alignment and domain information
>gnl|CDD|237585 PRK14015, pepN, aminopeptidase N; Provisional Back     alignment and domain information
>gnl|CDD|222169 pfam13485, Peptidase_MA_2, Peptidase MA superfamily Back     alignment and domain information
>gnl|CDD|221257 pfam11838, DUF3358, Domain of unknown function (DUF3358) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 653
KOG1046 882 consensus Puromycin-sensitive aminopeptidase and r 100.0
TIGR02412 831 pepN_strep_liv aminopeptidase N, Streptomyces livi 100.0
COG0308 859 PepN Aminopeptidase N [Amino acid transport and me 100.0
TIGR02414 863 pepN_proteo aminopeptidase N, Escherichia coli typ 100.0
PRK14015 875 pepN aminopeptidase N; Provisional 100.0
TIGR02411601 leuko_A4_hydro leukotriene A-4 hydrolase/aminopept 100.0
PF01433390 Peptidase_M1: Peptidase family M1 This is family M 100.0
KOG1047613 consensus Bifunctional leukotriene A4 hydrolase/am 100.0
KOG1932 1180 consensus TATA binding protein associated factor [ 100.0
PF11838 324 ERAP1_C: ERAP1-like C-terminal domain; InterPro: I 99.76
COG3975558 Predicted protease with the C-terminal PDZ domain 99.24
PF13485128 Peptidase_MA_2: Peptidase MA superfamily 99.22
PF10460366 Peptidase_M30: Peptidase M30; InterPro: IPR019501 97.81
PF05299122 Peptidase_M61: M61 glycyl aminopeptidase; InterPro 97.08
PF04450205 BSP: Peptidase of plants and bacteria; InterPro: I 96.73
PF07607128 DUF1570: Protein of unknown function (DUF1570); In 95.91
PF10026195 DUF2268: Predicted Zn-dependent protease (DUF2268) 93.38
COG4324376 Predicted aminopeptidase [General function predict 88.98
PF01863205 DUF45: Protein of unknown function DUF45; InterPro 86.56
PF10023337 DUF2265: Predicted aminopeptidase (DUF2265); Inter 86.06
PRK04860160 hypothetical protein; Provisional 85.62
smart00731146 SprT SprT homologues. Predicted to have roles in t 83.41
>KOG1046 consensus Puromycin-sensitive aminopeptidase and related aminopeptidases [Amino acid transport and metabolism; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=3.1e-125  Score=1086.99  Aligned_cols=624  Identities=45%  Similarity=0.771  Sum_probs=572.1

Q ss_pred             ccccCCCCCCCCceeeEEEEEEEEccCCceEEEEEEEEEEEecccCEEEEEecCceeEEEEEEecCCcccccccee-ecC
Q 006262            8 NQFKSQARLPKFAIPSYYDLYIKLDLVACTFSGNVNININIIEKTNFIVLNALELNVHEVLFTSSHNQEYRPSDAI-MDK   86 (653)
Q Consensus         8 ~~~~~~~rLp~~~~p~~Y~l~l~~d~~~~~f~G~v~I~~~~~~~~~~i~L~~~~l~i~~v~~~~~~~~~~~~~~~~-~~~   86 (653)
                      .++...+|||.+++|+||+|.|.+++....|.|++.|.+.+.++++.|+||+.+++|.++.+.............. .+.
T Consensus        23 ~~~~~~~rLP~~v~P~~Y~l~l~~~l~~~~f~G~v~I~l~v~~~t~~i~Lh~~~l~i~~~~~~~~~~~~~~~~~~~~~~~  102 (882)
T KOG1046|consen   23 DKFPNEYRLPTNVVPLHYDLTLKPDLEEFTFTGSVKISLEVSEATRFIVLHAKDLKITSASLVSRPSSGSVQLEVSVEEK  102 (882)
T ss_pred             ccccccccCCCCCCCceeEEEEecCCcCCcceeEEEEEEEEecccCEEEEEhhhccceeEEEEecCCCCccccccccccc
Confidence            3333678999999999999999999999999999999999999999999999999999999875211111111111 111


Q ss_pred             C-CcEEEEEeccCccce-eEEEEEEEEeeecCCCcceEEeeeec-CCeeeeeeecccccCCCCeeeeecCCCCCeeEEEE
Q 006262           87 D-DEILVLVFDEPLAVG-EGILRIIFYGKLNEHTKGFYKCSYVE-KEVKKNMAVTQFEAVDARRCFPCWDEPALKATFKI  163 (653)
Q Consensus        87 ~-~~~l~i~l~~~l~~g-~~~l~i~y~g~~~~~~~G~y~~~y~~-~g~~~~~~~T~~ep~~Ar~~fPc~DeP~~ka~f~l  163 (653)
                      . .+.+.+.+++++.+| .|+|+|.|.|.+++++.|||+++|.+ .+..+++++|||||++||++|||||||++||+|+|
T Consensus       103 ~~~~~l~~~~~~~l~~~~~y~L~i~f~g~l~~~~~G~y~s~y~~~~~~~~~~~~Tqfept~AR~~FPCfDeP~~KAtF~I  182 (882)
T KOG1046|consen  103 EQEETLVFPLNETLLAGSSYTLTIEFTGKLNDSSEGFYRSSYTDSEGSEKSIAATQFEPTDARRAFPCFDEPAFKATFTI  182 (882)
T ss_pred             ccceEEEEEcccccccCCeEEEEEEEeEeecCCcceeeeecccCCCCceEEEEEeccCccchhhcCCCCCcccccCceEE
Confidence            1 167889998999999 79999999999999999999999987 46668999999999999999999999999999999


Q ss_pred             EEEeCCCCeEEecCcccce-eecCCEEEEEEEeCCcccceEEEEEEecceeeeecccCCeEEEEEecCCCcchhHHHHHH
Q 006262          164 TLDIPSELTALSNMPILDE-KLNGNLKTVYFEESPVMSTYLVAFVVGLFDHIEDTTTNGVKVHVYCPVGKSSEGKHALDV  242 (653)
Q Consensus       164 ~i~~p~~~~~~sn~~~~~~-~~~~~~~~~~f~~t~~mstyl~a~~vg~f~~~~~~~~~g~~v~v~~~~~~~~~~~~~l~~  242 (653)
                      +|.||++++++|||++.++ ..++++++++|++||+||||++||+||+|...+..+.+|+++++|++|+...++++|+++
T Consensus       183 tl~hp~~~~aLSNm~v~~~~~~~~~~~~~~F~~Tp~MstYLvAf~V~~f~~~e~~~~~~v~vrv~a~p~~~~~~~~al~~  262 (882)
T KOG1046|consen  183 TLVHPKGYTALSNMPVIKEEPVDDGWKTTTFEKTPKMSTYLVAFAVGDFVYVETITKSGVPVRVYARPEKINQGQFALEV  262 (882)
T ss_pred             EEEecCCceEeecCcccccccccCCeeEEEEEecCCCchhhheeeeeccccceeecCCCceEEEEeChHHhhHHHHHHHH
Confidence            9999999999999999876 455559999999999999999999999999999888889999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCCCCcceeecCCCCcccccccccceeecceeeecCCCCCHHHHHHHHHHHHHHHHHHHhcCccC
Q 006262          243 AIKSLGIYTEFFSTPYPLPKLDMVAVSEFHAGAMENFGLIVYRENELLYNEKTSTANRKQIMAISTSHEVAHQWFGNLVT  322 (653)
Q Consensus       243 ~~~~l~~~e~~fg~~yp~~kld~V~~P~~~~game~~Gli~~~e~~ll~~~~~s~~~~~~~~~~~iaHElaHqWfGnlVt  322 (653)
                      +.++|+||+++||++||++|+|+|++|+|..|||||||||+|+|..+|+++..++..++++++.+||||+|||||||+||
T Consensus       263 ~~~~L~~~e~~f~i~yPLpK~D~iavPdf~~GAMENwGLvtyre~~lL~~~~~ss~~~k~~va~vIaHElAHQWFGNLVT  342 (882)
T KOG1046|consen  263 ATKVLEFYEDYFGIPYPLPKLDLVAVPDFSAGAMENWGLVTYRETALLYDPQTSSSSNKQRVAEVIAHELAHQWFGNLVT  342 (882)
T ss_pred             HHHHHHHHHHHhCCCCCCccccEEecCCccccchhcCcceeeeehhhccCCCcCcHHHHHHHHHHHHHHHHHHHhcCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccchhHhhhhHHHHHHHHHHhhhCCchhhHHHHHHHhh-hhhccccccCCCCceeecCChhhhhhhcccccchhhhHH
Q 006262          323 MEWWTHLWLNEGFATWISYMATDIMFPEWKMWTQFLRQTS-HGLRLDAQEQSHPIEVEVHRADEIDQVFDAISYNKGSAV  401 (653)
Q Consensus       323 ~~~w~d~WL~EGfA~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~p~~~~~~~~~~~~~~f~~i~Y~Kg~~v  401 (653)
                      |+||+|+|||||||+|+++++++..+|+|..+++++.+.. .++..|+..++||+..++.++.+|...||.++|.||++|
T Consensus       343 m~wW~dLWLnEGfAt~~~~~~v~~~~p~~~~~~~~~~~~l~~~l~~D~l~~shpi~~~v~~~~ei~e~fd~i~Y~KGasv  422 (882)
T KOG1046|consen  343 MKWWNDLWLNEGFATYVEYLAVDHLFPEWDIWEQFLLENLERVLSLDALASSHPISVPVESPSEIDEIFDEISYQKGASV  422 (882)
T ss_pred             HhhhhhhhhcccHHHHHHHHhhccCCcchhhHHHHHHHHHHHHhhhhcccccCCeeeecCCcchhhhhhhhhhhhHHHHH
Confidence            9999999999999999999999999999999999887777 579999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCHHHHHHHHHHHHHhcccCCCChHHHHHHHHhhcCCCHHHHHHHHhcCCCcceEEEEEeCCEEEEEEEeeec
Q 006262          402 IRMLQSYLGEDIFQKSLSLYMKKYAWKNVETEDLWSVLSEESGINITSLMECWTKQKGHPVVYVNCKDNLLEFKQSQFVS  481 (653)
Q Consensus       402 l~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~sg~~l~~~~~~W~~~~G~P~l~v~~~~~~i~l~Q~rf~~  481 (653)
                      +|||+.++|++.|++||+.|+++|+|+|++++|||++|+...+.|++++|+.|+.|+|||+|+|.++++.++++|+||..
T Consensus       423 lRML~~~lGe~~F~~gi~~yL~~~~y~na~~~DLw~~l~~~~~~~v~~~M~~Wt~Q~G~Pvv~V~~~~~~~~l~Q~rf~~  502 (882)
T KOG1046|consen  423 LRMLESLLGEEVFRKGLRSYLKKHQYSNAKTEDLWDALEEGSGLDVSELMDTWTKQMGYPVVTVERNGDSLTLTQERFLS  502 (882)
T ss_pred             HHHHHHHHCHHHHHHHHHHHHHHhccCCCCchhHHHHHhccCCCCHHHHHhhhhcCCCCceEEEEecCCEEEEehhhhcc
Confidence            99999999999999999999999999999999999999988999999999999999999999999999999999999987


Q ss_pred             CCC--CCCCeeEEEEEEEECCcccceeeEeecceeEEEecCCCCCCCCccccccccCCCceEEeccCceeEEEEEcCHHH
Q 006262          482 SGL--QGDGRWTIPITLSLGSYNNQRNFLLESQSQSVDISEMLPSSDGKLCSFKECDETLWIKVNVEQSGFYRVIYDDEL  559 (653)
Q Consensus       482 ~~~--~~~~~w~iPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~wi~~N~~~~gyyrV~Yd~~~  559 (653)
                      .+.  .....|+||++|.+.........|++.++..+.++.               . .+||++|.++.|||||+||+++
T Consensus       503 ~~~~~~~~~~w~iPl~~~~~~~~~~~~~~~~~~~~~~~l~~---------------~-~~wi~~N~~~~g~yRV~Yd~~~  566 (882)
T KOG1046|consen  503 DPDPSEDNYLWWIPLTYTTSGSGSVPKFWLSSKSTTIKLPE---------------S-DQWIKVNLEQTGYYRVNYDDEN  566 (882)
T ss_pred             CCCccccCcccceeEEEEcCCCCccceeeecCCCcceecCC---------------C-CeEEEEeCCcceEEEEEeCHHH
Confidence            654  234599999999987665445577887777777764               1 3799999999999999999999


Q ss_pred             HHHHHHHHHc-CCCChhcHHHHHHHHHHHHHcCCCCHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHhccChhhHHH
Q 006262          560 SARLRKAVEN-NCLSAADKLGILDDMLALCQACKQPLSYLLLLLDAHRKEHDSMVLSKLINVCYDVVEIITDAMPDAVNE  638 (653)
Q Consensus       560 w~~l~~~l~~-~~i~~~~ra~li~D~~~l~~~g~l~~~~~l~l~~~l~~E~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~  638 (653)
                      |..|+++|.. ..+++.+|++||+|+|+|+++|+++++.+|+++.||.+|++|.||..+...+..+.. +..  .+.+..
T Consensus       567 w~~l~~~l~~~~~~~~~~Ra~li~D~~~la~~~~~~~~~~l~l~~~l~~e~~~~p~~~~~~~l~~~~~-~~~--~~~~~~  643 (882)
T KOG1046|consen  567 WALLIEQLKNHESLSVIDRAQLINDAFALARAGRLPYSIALNLISYLKNETDYVPWSAAIRSLYKLHS-LED--TEIYSK  643 (882)
T ss_pred             HHHHHHHHhhcCccCHhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhcccccchHHHHHHHHHHHhh-ccc--chHHHH
Confidence            9999999987 689999999999999999999999999999999999999999999999999999988 554  458999


Q ss_pred             HHHHHHHhcccc
Q 006262          639 LKDFSSVSSNLL  650 (653)
Q Consensus       639 ~~~~~~~~~~~~  650 (653)
                      ++.|+..+..++
T Consensus       644 ~~~~~~~l~~~~  655 (882)
T KOG1046|consen  644 FKEFVKKLILPI  655 (882)
T ss_pred             HHHHHHHHHHHH
Confidence            999999887765

>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type Back     alignment and domain information
>COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type Back     alignment and domain information
>PRK14015 pepN aminopeptidase N; Provisional Back     alignment and domain information
>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase Back     alignment and domain information
>PF01433 Peptidase_M1: Peptidase family M1 This is family M1 in the peptidase classification Back     alignment and domain information
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism] Back     alignment and domain information
>KOG1932 consensus TATA binding protein associated factor [Transcription] Back     alignment and domain information
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G [] Back     alignment and domain information
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only] Back     alignment and domain information
>PF13485 Peptidase_MA_2: Peptidase MA superfamily Back     alignment and domain information
>PF10460 Peptidase_M30: Peptidase M30; InterPro: IPR019501 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF05299 Peptidase_M61: M61 glycyl aminopeptidase; InterPro: IPR007963 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens [] Back     alignment and domain information
>PF07607 DUF1570: Protein of unknown function (DUF1570); InterPro: IPR011464 This entry represents hypothetical proteins confined to bacteria Back     alignment and domain information
>PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function Back     alignment and domain information
>COG4324 Predicted aminopeptidase [General function prediction only] Back     alignment and domain information
>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori Back     alignment and domain information
>PF10023 DUF2265: Predicted aminopeptidase (DUF2265); InterPro: IPR014553 This group represents a predicted aminopeptidase Back     alignment and domain information
>PRK04860 hypothetical protein; Provisional Back     alignment and domain information
>smart00731 SprT SprT homologues Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query653
3qnf_A 954 Crystal Structure Of The Open State Of Human Endopl 1e-101
2yd0_A 897 Crystal Structure Of The Soluble Domain Of Human En 1e-101
3mdj_A 921 Er Aminopeptidase, Erap1, Bound To The Zinc Aminope 1e-100
3se6_A 967 Crystal Structure Of The Human Endoplasmic Reticulu 8e-96
4e36_A 967 Crystal Structure Of The Human Endoplasmic Reticulu 4e-95
1z1w_A 780 Crystal Structures Of The Tricorn Interacting Facor 9e-93
3q7j_A 780 Engineered Thermoplasma Acidophilum F3 Factor Mimic 1e-92
4fyq_A 903 Human Aminopeptidase N (Cd13) Length = 903 3e-91
4h5h_A 908 Crystal Structure Of Porcine Aminopeptidase-N Compl 2e-88
4fke_A 909 Crystal Structure Of Porcine Aminopeptidase-N Lengt 2e-88
4f5c_A 959 Crystal Structure Of The Spike Receptor Binding Dom 2e-88
4hol_A 908 Crystal Structure Of Porcine Aminopeptidase-N Compl 5e-88
3ebg_A 889 Structure Of The M1 Alanylaminopeptidase From Malar 4e-30
3q43_A 891 X-Ray Crystal Structure Of Pfa-M1 Bound To Bestatin 4e-30
3ebi_A 890 Structure Of The M1 Alanylaminopeptidase From Malar 4e-30
3t8v_A 895 A Bestatin-Based Chemical Biology Strategy Reveals 1e-29
2dq6_A 870 Crystal Structure Of Aminopeptidase N From Escheric 1e-22
2hpo_A 891 Structure Of Aminopeptidase N From E. Coli Suggests 1e-22
3puu_A 891 Crystal Structure Of Glu121gln Mutant Of E. Coli Am 2e-22
2gtq_A 867 Crystal Structure Of Aminopeptidase N From Human Pa 2e-19
3u9w_A608 Structure Of Human Leukotriene A4 Hydrolase In Comp 1e-18
1hs6_A611 Structure Of Leukotriene A4 Hydrolase Complexed Wit 1e-18
1gw6_A610 Structure Of Leukotriene A4 Hydrolase D375n Mutant 1e-18
2r59_A616 Leukotriene A4 Hydrolase Complexed With Inhibitor R 1e-18
3cho_A610 Crystal Structure Of Leukotriene A4 Hydrolase In Co 1e-18
1sqm_A610 Structure Of [r563a] Leukotriene A4 Hydrolase Lengt 1e-18
1h19_A611 Structure Of [e271q] Leukotriene A4 Hydrolase Lengt 3e-18
3b7s_A616 [e296q]lta4h In Complex With Rsr Substrate Length = 3e-18
3cia_A605 Crystal Structure Of Cold-Aminopeptidase From Colwe 7e-17
2xq0_A632 Structure Of Yeast Lta4 Hydrolase In Complex With B 4e-16
2xpy_A632 Structure Of Native Leukotriene A4 Hydrolase From S 7e-16
>pdb|3QNF|A Chain A, Crystal Structure Of The Open State Of Human Endoplasmic Reticulum Aminopeptidase 1 Erap1 Length = 954 Back     alignment and structure 
Iteration: 1

 Score =  366 bits (940), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 205/620 (33%), Positives = 332/620 (53%), Gaps = 57/620 (9%)
Query: 12  SQARLPKFAIPSYYDLYIKLDLVACTFSGNVNININIIEKTNFIVLNALELNVHEVLFTS 71
           ++ RLP++ IP +YDL I  +L   TF G   + I   + T+ I+L++  L +       
Sbjct: 56  NKIRLPEYVIPVHYDLLIHANLTTLTFWGTTKVEITASQPTSTIILHSHHLQISRATLRK 115
Query: 72  SHNQEY--RPSDAIMDKDDEILVLVFDEPLAVGEGILRIIFY-GKLNEHTKGFYKCSYVE 128
              +     P   +     E + L+  EPL VG     +I Y G L+E   GFYK +Y  
Sbjct: 116 GAGERLSEEPLQVLEHPRQEQIALLAPEPLLVGLPYTVVIHYAGNLSETFHGFYKSTYRT 175
Query: 129 KEVK-KNMAVTQFEAVDARRCFPCWDEPALKATFKITLDIPSELTALSNMPILDE-KLNG 186
           KE + + +A TQFE   AR  FPC+DEPA KA+F I +       A+SNMP++    +  
Sbjct: 176 KEGELRILASTQFEPTAARMAFPCFDEPAFKASFSIKIRREPRHLAISNMPLVKSVTVAE 235
Query: 187 NLKTVYFEESPVMSTYLVAFVVGLFDHIEDTTTNGVKVHVYCPVGKSSEGKHALDVAIKS 246
            L   +F+ +  MSTYLVAF++  F+ +   T +GVKV VY    K ++  +ALD A+  
Sbjct: 236 GLIEDHFDVTVKMSTYLVAFIISDFESVSKITKSGVKVSVYAVPDKINQADYALDAAVTL 295
Query: 247 LGIYTEFFSTPYPLPKLDMVAVSEFHAGAMENFGLIVYRENELLYNEKTSTANRKQIMAI 306
           L  Y ++FS PYPLPK D+ A+ +F +GAMEN+GL  YRE+ LL++ + S+A+ K  + +
Sbjct: 296 LEFYEDYFSIPYPLPKQDLAAIPDFQSGAMENWGLTTYRESALLFDAEKSSASSKLGITM 355
Query: 307 STSHEVAHQWFGNLVTMEWWTHLWLNEGFATWISYMATDIMFPEWKMWTQFLRQTSHGLR 366
           + +HE+AHQWFGNLVTMEWW  LWLNEGFA ++ +++  +  PE K+   F  +    + 
Sbjct: 356 TVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFMEFVSVSVTHPELKVGDYFFGKCFDAME 415
Query: 367 LDAQEQSHPIEVEVHRADEIDQVFDAISYNKGSAVIRMLQSYLGEDIFQKSLSLYMKKYA 426
           +DA   SHP+   V    +I ++FD +SY+KG+ ++ ML+ YL  D F+  +  Y++K++
Sbjct: 416 VDALNSSHPVSTPVENPAQIREMFDDVSYDKGACILNMLREYLSADAFKSGIVQYLQKHS 475
Query: 427 WKNVETEDLWSVLSE---------------------------ESGINITSLMECWTKQKG 459
           +KN + EDLW  ++                            + G+++ ++M  WT QKG
Sbjct: 476 YKNTKNEDLWDSMASICPTDGVKGMDGFCSRSQHSSSSSHWHQEGVDVKTMMNTWTLQKG 535
Query: 460 HPVVYVNCKDNLLEFKQSQFV--SSGLQGDGR-WTIPITLSLGSYNNQRNFLLESQSQSV 516
            P++ +  +   +  KQ  ++  S G    G  W +P+T      +    FLL++++  +
Sbjct: 536 FPLITITVRGRNVHMKQEHYMKGSDGAPDTGYLWHVPLTFITSKSDMVHRFLLKTKTDVL 595
Query: 517 DISEMLPSSDGKLCSFKECDETLWIKVNVEQSGFYRVIYDDE----LSARLRKAVENNCL 572
               +LP            +E  WIK NV  +G+Y V Y+D+    L+  L+    +  +
Sbjct: 596 ----ILP------------EEVEWIKFNVGMNGYYIVHYEDDGWDSLTGLLKGT--HTAV 637
Query: 573 SAADKLGILDDMLALCQACK 592
           S+ D+  ++++   L    K
Sbjct: 638 SSNDRASLINNAFQLVSIGK 657
>pdb|2YD0|A Chain A, Crystal Structure Of The Soluble Domain Of Human Endoplasmic Reticulum Aminopeptidase 1 Erap1 Length = 897 Back     alignment and structure
>pdb|3MDJ|A Chain A, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase Inhibitor, Bestatin Length = 921 Back     alignment and structure
>pdb|3SE6|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum Aminopeptidase 2 Length = 967 Back     alignment and structure
>pdb|4E36|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum Aminopeptidase 2 Variant N392k Length = 967 Back     alignment and structure
>pdb|1Z1W|A Chain A, Crystal Structures Of The Tricorn Interacting Facor F3 From Thermoplasma Acidophilum, A Zinc Aminopeptidase In Three Different Conformations Length = 780 Back     alignment and structure
>pdb|3Q7J|A Chain A, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human Aminopeptidase N (Apn) As A Target For Anticancer Drug Development Length = 780 Back     alignment and structure
>pdb|4FYQ|A Chain A, Human Aminopeptidase N (Cd13) Length = 903 Back     alignment and structure
>pdb|4H5H|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed With Cleaved Poly-Alanine Length = 908 Back     alignment and structure
>pdb|4FKE|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Length = 909 Back     alignment and structure
>pdb|4F5C|A Chain A, Crystal Structure Of The Spike Receptor Binding Domain Of A Porcine Respiratory Coronavirus In Complex With The Pig Aminopeptidase N Ectodomain Length = 959 Back     alignment and structure
>pdb|4HOL|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed With Poly- Alanine Length = 908 Back     alignment and structure
>pdb|3EBG|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria Length = 889 Back     alignment and structure
>pdb|3Q43|A Chain A, X-Ray Crystal Structure Of Pfa-M1 Bound To Bestatin Derivative 15 Length = 891 Back     alignment and structure
>pdb|3EBI|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria Complexed With The Phosphinate Dipeptide Analog Length = 890 Back     alignment and structure
>pdb|3T8V|A Chain A, A Bestatin-Based Chemical Biology Strategy Reveals Distinct Roles For Malaria M1- And M17-Family Aminopeptidases Length = 895 Back     alignment and structure
>pdb|2DQ6|A Chain A, Crystal Structure Of Aminopeptidase N From Escherichia Coli Length = 870 Back     alignment and structure
>pdb|2HPO|A Chain A, Structure Of Aminopeptidase N From E. Coli Suggests A Compartmentalized, Gated Active Site Length = 891 Back     alignment and structure
>pdb|3PUU|A Chain A, Crystal Structure Of Glu121gln Mutant Of E. Coli Aminopeptidase N Length = 891 Back     alignment and structure
>pdb|2GTQ|A Chain A, Crystal Structure Of Aminopeptidase N From Human Pathogen Neisseria Meningitidis Length = 867 Back     alignment and structure
>pdb|3U9W|A Chain A, Structure Of Human Leukotriene A4 Hydrolase In Complex With Inhibitor Sc57461a Length = 608 Back     alignment and structure
>pdb|1HS6|A Chain A, Structure Of Leukotriene A4 Hydrolase Complexed With Bestatin. Length = 611 Back     alignment and structure
>pdb|1GW6|A Chain A, Structure Of Leukotriene A4 Hydrolase D375n Mutant Length = 610 Back     alignment and structure
>pdb|2R59|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor Rb3041 Length = 616 Back     alignment and structure
>pdb|3CHO|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex With 2-Amino-N-[4-(Phenylmethoxy)phenyl]-Acetamide Length = 610 Back     alignment and structure
>pdb|1SQM|A Chain A, Structure Of [r563a] Leukotriene A4 Hydrolase Length = 610 Back     alignment and structure
>pdb|1H19|A Chain A, Structure Of [e271q] Leukotriene A4 Hydrolase Length = 611 Back     alignment and structure
>pdb|3B7S|A Chain A, [e296q]lta4h In Complex With Rsr Substrate Length = 616 Back     alignment and structure
>pdb|3CIA|A Chain A, Crystal Structure Of Cold-Aminopeptidase From Colwellia Psychrerythraea Length = 605 Back     alignment and structure
>pdb|2XQ0|A Chain A, Structure Of Yeast Lta4 Hydrolase In Complex With Bestatin Length = 632 Back     alignment and structure
>pdb|2XPY|A Chain A, Structure Of Native Leukotriene A4 Hydrolase From Saccharomyces Cerevisiae Length = 632 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query653
2xdt_A 897 Endoplasmic reticulum aminopeptidase 1; glycoprote 0.0
3se6_A 967 Endoplasmic reticulum aminopeptidase 2; thermolysi 0.0
1z5h_A 780 Tricorn protease interacting factor F3; zinc amino 0.0
2xq0_A632 LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: B 1e-171
3cia_A605 Cold-active aminopeptidase; psychrohilic, hydrolas 1e-167
3b7s_A616 Leukotriene A-4 hydrolase; transition state, analo 1e-166
3ebh_A 889 PFA-M1, M1 family aminopeptidase; hydrolase, metal 1e-161
2gtq_A 867 Aminopeptidase N; alanine aminopeptidase, M1 famil 1e-150
3b34_A 891 Aminopeptidase N; protease, hydrolase, thermolysin 1e-136
3rjo_A 419 Endoplasmic reticulum aminopeptidase 1; ERAP1, hyd 4e-27
4fgm_A597 Aminopeptidase N family protein; structural genomi 2e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-06
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG MES MAN; 3.08A {Homo sapiens} Length = 967 Back     alignment and structure
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase, gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma acidophilum} PDB: 1z1w_A 3q7j_A* Length = 780 Back     alignment and structure
>2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A {Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A* Length = 632 Back     alignment and structure
>3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A {Colwellia psychrerythraea} Length = 605 Back     alignment and structure
>3b7s_A Leukotriene A-4 hydrolase; transition state, analogue peptide, hydrolysis, hydrolase, leukotriene biosynthesis, metal-binding, metalloprotease; 1.47A {Homo sapiens} SCOP: a.118.1.7 b.98.1.1 d.92.1.13 PDB: 3b7t_A 3b7r_L* 2r59_A* 3b7u_X* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A* 3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A* 3ftz_A* 3fu0_A* 3fu3_A* 3fu5_A* ... Length = 616 Back     alignment and structure
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding, metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A {Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A* 3q44_A* 3t8v_A* Length = 889 Back     alignment and structure
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2, structural genomics, protein structure initiative; 2.05A {Neisseria meningitidis} Length = 867 Back     alignment and structure
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal membrane, metal-binding, metalloprotease; HET: PHE; 1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A* 2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A 2dq6_A 2dqm_A* 2zxg_A* Length = 891 Back     alignment and structure
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens} Length = 419 Back     alignment and structure
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR} Length = 597 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query653
3se6_A 967 Endoplasmic reticulum aminopeptidase 2; thermolysi 100.0
4fke_A 909 Aminopeptidase N; zinc aminopeptidase, hydrolase; 100.0
2xdt_A 897 Endoplasmic reticulum aminopeptidase 1; glycoprote 100.0
1z5h_A 780 Tricorn protease interacting factor F3; zinc amino 100.0
2gtq_A 867 Aminopeptidase N; alanine aminopeptidase, M1 famil 100.0
3ebh_A 889 PFA-M1, M1 family aminopeptidase; hydrolase, metal 100.0
3b34_A 891 Aminopeptidase N; protease, hydrolase, thermolysin 100.0
3cia_A605 Cold-active aminopeptidase; psychrohilic, hydrolas 100.0
3u9w_A608 Leukotriene A-4 hydrolase; hydrolase-hydrolase inh 100.0
2xq0_A632 LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: B 100.0
3rjo_A 419 Endoplasmic reticulum aminopeptidase 1; ERAP1, hyd 100.0
4fgm_A597 Aminopeptidase N family protein; structural genomi 99.96
1u4g_A301 Elastase, pseudolysin; , inhibition, peptidase fam 87.39
1bqb_A301 Protein (aureolysin); hydrolase, metalloproteinase 80.69
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG MES MAN; 3.08A {Homo sapiens} PDB: 4e36_A* Back     alignment and structure
Probab=100.00  E-value=2e-127  Score=1121.61  Aligned_cols=624  Identities=34%  Similarity=0.598  Sum_probs=567.3

Q ss_pred             cCCCCCCCCceeeEEEEEEEEccCCceEEEEEEEEEEEecccCEEEEEecCceeEEEEEEecCCc-----cccccceeec
Q 006262           11 KSQARLPKFAIPSYYDLYIKLDLVACTFSGNVNININIIEKTNFIVLNALELNVHEVLFTSSHNQ-----EYRPSDAIMD   85 (653)
Q Consensus        11 ~~~~rLp~~~~p~~Y~l~l~~d~~~~~f~G~v~I~~~~~~~~~~i~L~~~~l~i~~v~~~~~~~~-----~~~~~~~~~~   85 (653)
                      -.++|||.+++|.||+|+|++++++.+|+|+|+|++++.++++.|+||+.+|+|.+|.+..+...     ........++
T Consensus        64 ~~~~RLP~~v~P~hY~L~L~~~~~~~~f~G~v~I~~~~~~~t~~I~Lh~~~L~I~~v~v~~~~~~~~~~~~~~~~~~~~~  143 (967)
T 3se6_A           64 WQELRLPSVVIPLHYDLFVHPNLTSLDFVASEKIEVLVSNATQFIILHSKDLEITNATLQSEEDSRYMKPGKELKVLSYP  143 (967)
T ss_dssp             CCCSSCCTTEEEEEEEEEEEEETTTTEEEEEEEEEEEESSCCSEEEEECSSCEEEEEEEEECC---CCSSCEECEEEEEG
T ss_pred             cccccCCCCceEEEEEEEEEEeCCCCEEEEEEEEEEEEEcCCCEEEEECCCCEEEEEEEeccCCcccccccceeeeEEec
Confidence            45789999999999999999999999999999999999999999999999999999998742111     1111122333


Q ss_pred             CCCcEEEEEeccCccce-eEEEEEEEEeeecCCCcceEEeeeec-CCeeeeeeecccccCCCCeeeeecCCCCCeeEEEE
Q 006262           86 KDDEILVLVFDEPLAVG-EGILRIIFYGKLNEHTKGFYKCSYVE-KEVKKNMAVTQFEAVDARRCFPCWDEPALKATFKI  163 (653)
Q Consensus        86 ~~~~~l~i~l~~~l~~g-~~~l~i~y~g~~~~~~~G~y~~~y~~-~g~~~~~~~T~~ep~~Ar~~fPc~DeP~~ka~f~l  163 (653)
                       .++.+.|.++++|++| .|+|+|.|+|.+++++.|||++.|.+ +|+.+++++|||||.+||+||||||||++||+|+|
T Consensus       144 -~~~~l~i~l~~~L~~g~~~~l~i~y~g~~~~~~~G~y~s~y~~~~g~~~~~~~Tq~ep~~AR~~FPC~DeP~~KAtf~i  222 (967)
T 3se6_A          144 -AHEQIALLVPEKLTPHLKYYVAMDFQAKLGDGFEGFYKSTYRTLGGETRILAVTDFEPTQARMAFPCFDEPLFKANFSI  222 (967)
T ss_dssp             -GGTEEEEECSSCCCTTCCEEEEEEEEEECBSSSSEEEEEEEECTTSCEEEEEEEECTTTTGGGTSCBCCSTTCCBEEEE
T ss_pred             -CCCEEEEEcCCccCCCCeEEEEEEEEEecCCCccceeeeeeEcCCCceEEEEEEecccCCCCeEEEecCCcCceeEEEE
Confidence             5678999999999999 89999999999999999999999987 68889999999999999999999999999999999


Q ss_pred             EEEeCCCCeEEecCcccce-eecCCEEEEEEEeCCcccceEEEEEEecceeeeecccCCeEEEEEecCCCcchhHHHHHH
Q 006262          164 TLDIPSELTALSNMPILDE-KLNGNLKTVYFEESPVMSTYLVAFVVGLFDHIEDTTTNGVKVHVYCPVGKSSEGKHALDV  242 (653)
Q Consensus       164 ~i~~p~~~~~~sn~~~~~~-~~~~~~~~~~f~~t~~mstyl~a~~vg~f~~~~~~~~~g~~v~v~~~~~~~~~~~~~l~~  242 (653)
                      +|++|++|+|+|||++.++ ...+++++++|+.|+|||+|++||+||+|+.++..+.+|+++++|++|+..++++++++.
T Consensus       223 tI~~p~~~~alSN~~~~~~~~~~~g~~~~~F~~t~pmstYLva~~vg~f~~~~~~~~~gv~v~v~~~p~~~~~~~~al~~  302 (967)
T 3se6_A          223 KIRRESRHIALSNMPKVKTIELEGGLLEDHFETTVKMSTYLVAYIVCDFHSLSGFTSSGVKVSIYASPDKRNQTHYALQA  302 (967)
T ss_dssp             EEEECTTCEEEESSCEEEEEECTTSCEEEEECCCCSBCGGGCCEEEECCEEEEEECTTCCEEEEEECGGGGGGGHHHHHH
T ss_pred             EEEECCCcEEEeCCCcccceecCCCeEEEEEecCCCccceeEEEEEeceEEEEeecCCCcEEEEEeCcchHHHHHHHHHH
Confidence            9999999999999998765 345678999999999999999999999999988666789999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCCCCcceeecCCCCcccccccccceeecceeeecCCCCCHHHHHHHHHHHHHHHHHHHhcCccC
Q 006262          243 AIKSLGIYTEFFSTPYPLPKLDMVAVSEFHAGAMENFGLIVYRENELLYNEKTSTANRKQIMAISTSHEVAHQWFGNLVT  322 (653)
Q Consensus       243 ~~~~l~~~e~~fg~~yp~~kld~V~~P~~~~game~~Gli~~~e~~ll~~~~~s~~~~~~~~~~~iaHElaHqWfGnlVt  322 (653)
                      +.+++++||++||+|||++|+|+|++|+|..||||||||++|++..++++++.++...++.++.+||||+|||||||+||
T Consensus       303 ~~~~l~~~e~~fg~~YP~~k~d~v~vPdf~~GaMEn~Glity~e~~ll~d~~~s~~~~k~~~~~vIaHElAHqWFGnlVT  382 (967)
T 3se6_A          303 SLKLLDFYEKYFDIYYPLSKLDLIAIPDFAPGAMENWGLITYRETSLLFDPKTSSASDKLWVTRVIAHELAHQWFGNLVT  382 (967)
T ss_dssp             HHHHHHHHHHHHTCCCCSSEEEEEEESSCSSSEECCTTEEEEEGGGTCCCTTTCCHHHHHHHHHHHHHHHGGGTBTTTEE
T ss_pred             HHHHHHHHHHhcCCCCCcccccEEEecCCCCcccccCCccccchhheecCcccCCHHhhHhHHHHHHHHHHHHHhcCccc
Confidence            99999999999999999999999999999999999999999999999999998888899999999999999999999999


Q ss_pred             ccccchhHhhhhHHHHHHHHHHhhhCCchhhHHHHHHHhhhhhccccccCCCCceeecCChhhhhhhcccccchhhhHHH
Q 006262          323 MEWWTHLWLNEGFATWISYMATDIMFPEWKMWTQFLRQTSHGLRLDAQEQSHPIEVEVHRADEIDQVFDAISYNKGSAVI  402 (653)
Q Consensus       323 ~~~w~d~WL~EGfA~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~p~~~~~~~~~~~~~~f~~i~Y~Kg~~vl  402 (653)
                      |+||+|+|||||||+|++++++++.+|+|.++..|+.+...++..|+..++||+..++.++.++...|+.++|.||+++|
T Consensus       383 ~~wW~dlWLnEGFAty~e~~~~~~~~p~~~~~~~~~~~~~~al~~D~~~~~~Pi~~~v~~~~~i~~~Fd~i~Y~KGa~vL  462 (967)
T 3se6_A          383 MEWWNDIWLNEGFAKYMELIAVNATYPELQFDDYFLNVCFEVITKDSLNSSRPISKPAETPTQIQEMFDEVSYNKGACIL  462 (967)
T ss_dssp             ESSGGGTHHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHHHHTTTTSTTCCCSSCCCCSHHHHHHTSSHHHHHHHHHHH
T ss_pred             cCCCccccHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhhcccCCCCceeecCCHHHHHHhcchhhhhHHHHHH
Confidence            99999999999999999999999999999988777666567889999999999999999999999999999999999999


Q ss_pred             HHHHHhhCHHHHHHHHHHHHHhcccCCCChHHHHHHHHhh---------------------------cCCCHHHHHHHHh
Q 006262          403 RMLQSYLGEDIFQKSLSLYMKKYAWKNVETEDLWSVLSEE---------------------------SGINITSLMECWT  455 (653)
Q Consensus       403 ~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~---------------------------sg~~l~~~~~~W~  455 (653)
                      |||+..||++.|+++|+.|+++|+|++++++|||++|+++                           +|.++++||++|+
T Consensus       463 ~mL~~~lG~e~F~~gLr~Yl~~~~~~nat~~Dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dv~~~m~~W~  542 (967)
T 3se6_A          463 NMLKDFLGEEKFQKGIIQYLKKFSYRNAKNDDLWSSLSNSCLESDFTSGGVCHSDPKMTSNMLAFLGENAEVKEMMTTWT  542 (967)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHHHTTEEECHHHHHHHHHCC-------------------------CCCCCCHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhhccccccccccccccccccccccccCCcCHHHHHHHHh
Confidence            9999999999999999999999999999999999999995                           6899999999999


Q ss_pred             cCCCcceEEEEEeCCEEEEEEEeeecCCCC---------CCCeeEEEEEEEECCcccceeeEeecceeEEEecCCCCCCC
Q 006262          456 KQKGHPVVYVNCKDNLLEFKQSQFVSSGLQ---------GDGRWTIPITLSLGSYNNQRNFLLESQSQSVDISEMLPSSD  526 (653)
Q Consensus       456 ~~~G~P~l~v~~~~~~i~l~Q~rf~~~~~~---------~~~~w~iPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  526 (653)
                      .|+|||+++|++++++++|+|+||+.++..         .+..|+|||+|.++++.....+|+..++.++.++.      
T Consensus       543 ~q~G~Pvl~V~~~~~~~~l~Q~rf~~~~~~~~~~~~~~~~~~~W~IPl~~~~~~~~~~~~~~l~~~~~~i~~~~------  616 (967)
T 3se6_A          543 LQKGIPLLVVKQDGCSLRLQQERFLQGVFQEDPEWRALQERYLWHIPLTYSTSSSNVIHRHILKSKTDTLDLPE------  616 (967)
T ss_dssp             HSCSCEEEEEEEETTEEEEEEEECCCC-----------CCSCCCCCCEEEEESSCCCCEEECCCSSEEEEECSS------
T ss_pred             cCCCCcEEEEEecCCEEEEEeeeecCCCCCCccccccccCCceEEEEEEEEeCCCCccceEEecCCceEEeccC------
Confidence            999999999999989999999999875432         23589999999987655445577776666666642      


Q ss_pred             CccccccccCCCceEEeccCceeEEEEEcCHHHHHHHHHHHHc--CCCChhcHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Q 006262          527 GKLCSFKECDETLWIKVNVEQSGFYRVIYDDELSARLRKAVEN--NCLSAADKLGILDDMLALCQACKQPLSYLLLLLDA  604 (653)
Q Consensus       527 ~~~~~~~~~~~~~wi~~N~~~~gyyrV~Yd~~~w~~l~~~l~~--~~i~~~~ra~li~D~~~l~~~g~l~~~~~l~l~~~  604 (653)
                               . ++||++|.++.||||||||+++|++|+++|..  ..||+.||||||+|+|+||++|+++++.+|+|++|
T Consensus       617 ---------~-~~wi~~N~~~~GyyRV~Yd~~~w~~l~~~L~~~~~~i~~~~Ra~li~D~~~la~~g~~~~~~~l~l~~~  686 (967)
T 3se6_A          617 ---------K-TSWVKFNVDSNGYYIVHYEGHGWDQLITQLNQNHTLLRPKDRVGLIHDVFQLVGAGRLTLDKALDMTYY  686 (967)
T ss_dssp             ---------C-CSCEEESGGGCSSCEEEEETTHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHTTG
T ss_pred             ---------C-CceEEEeCCccEEEEEecCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence                     2 68999999999999999999999999999975  36999999999999999999999999999999999


Q ss_pred             hhcCCCHHHHHHHHHHHHHHHHHHhcc-ChhhHHHHHHHHHHhccccc
Q 006262          605 HRKEHDSMVLSKLINVCYDVVEIITDA-MPDAVNELKDFSSVSSNLLL  651 (653)
Q Consensus       605 l~~E~~~~~w~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  651 (653)
                      |++|++|+||.+++..|.++.+++.+. .++.++.|++|+..++.++.
T Consensus       687 l~~E~~~~~w~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~  734 (967)
T 3se6_A          687 LQHETSSPALLEGLSYLESFYHMMDRRNISDISENLKRYLLQYFKPVI  734 (967)
T ss_dssp             GGTCCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHTTHHHH
T ss_pred             hcCCCcHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999998743 24678999999999887764
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A* Back     alignment and structure
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase, gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma acidophilum} PDB: 1z1w_A 3q7j_A* Back     alignment and structure
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2, structural genomics, protein structure initiative; 2.05A {Neisseria meningitidis} Back     alignment and structure
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding, metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A {Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A* 3q44_A* 3t8v_A* Back     alignment and structure
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal membrane, metal-binding, metalloprotease; HET: PHE; 1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A* 2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A 2dq6_A 2dqm_A* 2zxg_A* Back     alignment and structure
>3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A {Colwellia psychrerythraea} Back     alignment and structure
>3u9w_A Leukotriene A-4 hydrolase; hydrolase-hydrolase inhibitor complex; HET: 28P; 1.25A {Homo sapiens} PDB: 3cho_A* 3chp_A* 3chq_A* 3chr_A* 3chs_A* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A* 3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A* 3ftz_A* 3fu0_A* 3fu3_A* ... Back     alignment and structure
>2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A {Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A* Back     alignment and structure
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens} Back     alignment and structure
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR} Back     alignment and structure
>1u4g_A Elastase, pseudolysin; , inhibition, peptidase family M4, hydrolase; HET: HPI; 1.40A {Pseudomonas aeruginosa} SCOP: d.92.1.2 PDB: 1ezm_A* 3dbk_A* Back     alignment and structure
>1bqb_A Protein (aureolysin); hydrolase, metalloproteinase; 1.72A {Staphylococcus aureus} SCOP: d.92.1.2 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 653
d3b7sa3252 d.92.1.13 (A:209-460) Leukotriene A4 hydrolase cat 3e-42
d3b7sa2208 b.98.1.1 (A:1-208) Leukotriene A4 hydrolase N-term 9e-33
>d3b7sa3 d.92.1.13 (A:209-460) Leukotriene A4 hydrolase catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 252 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Leukotriene A4 hydrolase catalytic domain
domain: Leukotriene A4 hydrolase catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  151 bits (381), Expect = 3e-42
 Identities = 56/255 (21%), Positives = 100/255 (39%), Gaps = 19/255 (7%)

Query: 221 GVKVHVYCPVGKSSEGKHALDVAIKSLGIYTEFFSTPYPLPKLDMVAV-SEFHAGAMENF 279
           G +  V+    +  +  +        L I  +    PY   + D++ +   F  G MEN 
Sbjct: 7   GPRTLVWSEKEQVEKSAYEFSETESMLKIAEDLG-GPYVWGQYDLLVLPPSFPYGGMENP 65

Query: 280 GLIVYRENELLYNEKTSTANRKQIMAISTSHEVAHQWFGNLVTMEWWTHLWLNEGFATWI 339
            L       L            + ++   +H+++H W GNLVT + W H WLNEG   ++
Sbjct: 66  CLTFVTPTLL---------AGDKSLSNVIAHQISHSWTGNLVTNKTWDHFWLNEGHTVYL 116

Query: 340 SYMATDIMFPEW-KMWTQFLRQTSHGLRLDAQEQSHPIEVEVHRADEIDQV--FDAISYN 396
                  +F E  + +            +    ++HP    V    +ID    + ++ Y 
Sbjct: 117 ERHICGRLFGEKFRHFNALGGWGELQNSVKTFGETHPFTKLVVDLTDIDPDVAYSSVPYE 176

Query: 397 KGSAVIRMLQSYLG-EDIFQKSLSLYMKKYAWKNVETEDLWSVLSEESG----INITSLM 451
           KG A++  L+  LG  +IF   L  Y++K+++K++ T+D    L         +      
Sbjct: 177 KGFALLFYLEQLLGGPEIFLGFLKAYVEKFSYKSITTDDWKDFLYSYFKDKVDVLNQVDW 236

Query: 452 ECWTKQKGHPVVYVN 466
             W    G P +  N
Sbjct: 237 NAWLYSPGLPPIKPN 251
>d3b7sa2 b.98.1.1 (A:1-208) Leukotriene A4 hydrolase N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 208 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query653
d3b7sa3252 Leukotriene A4 hydrolase catalytic domain {Human ( 100.0
d3b7sa2208 Leukotriene A4 hydrolase N-terminal domain {Human 100.0
d1u4ga_298 Elastase {Pseudomonas aeruginosa [TaxId: 287]} 92.41
d1bqba_301 Aureolysin {Staphylococcus aureus [TaxId: 1280]} 84.69
d1kjpa_316 Thermolysin {Bacillus thermoproteolyticus [TaxId: 83.63
>d3b7sa3 d.92.1.13 (A:209-460) Leukotriene A4 hydrolase catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Leukotriene A4 hydrolase catalytic domain
domain: Leukotriene A4 hydrolase catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-51  Score=409.21  Aligned_cols=236  Identities=24%  Similarity=0.393  Sum_probs=206.3

Q ss_pred             CeEEEEEecCCCcchhHHHHHHHHHHHHHHHHHhCCCCCCCCcceeec-CCCCcccccccccceeecceeeecCCCCCHH
Q 006262          221 GVKVHVYCPVGKSSEGKHALDVAIKSLGIYTEFFSTPYPLPKLDMVAV-SEFHAGAMENFGLIVYRENELLYNEKTSTAN  299 (653)
Q Consensus       221 g~~v~v~~~~~~~~~~~~~l~~~~~~l~~~e~~fg~~yp~~kld~V~~-P~~~~game~~Gli~~~e~~ll~~~~~s~~~  299 (653)
                      |++|+||++|+..+.++++++.+.++|++||++|| |||++|+|+|++ |++..|||||||++++++..++.+..     
T Consensus         7 g~~vrv~~~p~~~~~~~~~l~~~~~~l~~~e~~~g-~YP~~k~d~v~~~~~~~~ggmE~~~l~~~~~~~~~~~~~-----   80 (252)
T d3b7sa3           7 GPRTLVWSEKEQVEKSAYEFSETESMLKIAEDLGG-PYVWGQYDLLVLPPSFPYGGMENPCLTFVTPTLLAGDKS-----   80 (252)
T ss_dssp             ETTEEEEECGGGHHHHHHHTTTHHHHHHHHHHHHC-CCCSSCCEEEECCTTCSSSEECCTTEEEECGGGCCSSST-----
T ss_pred             CCceEEEEccchHHHHHHHHHHHHHHHHHHHHhCC-CCCchhcCEEEeCCCccccccccceeeeecchhccccch-----
Confidence            78999999999999999999999999999999998 999999999999 68889999999999999985443332     


Q ss_pred             HHHHHHHHHHHHHHHHHhcCccCccccchhHhhhhHHHHHHHHHHhhhCCchhhHHHHHHHhh-hhhccccccCCCCcee
Q 006262          300 RKQIMAISTSHEVAHQWFGNLVTMEWWTHLWLNEGFATWISYMATDIMFPEWKMWTQFLRQTS-HGLRLDAQEQSHPIEV  378 (653)
Q Consensus       300 ~~~~~~~~iaHElaHqWfGnlVt~~~w~d~WL~EGfA~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~p~~~  378 (653)
                          +..+||||+|||||||+||++||+|+||+||||+|++.+++++.+|+............ .....|+....+|+..
T Consensus        81 ----~~~~iaHE~aHqWfG~~Vt~~~w~~~WL~EG~a~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (252)
T d3b7sa3          81 ----LSNVIAHQISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGWGELQNSVKTFGETHPFTK  156 (252)
T ss_dssp             ----TTHHHHHHHHTTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCGGGS
T ss_pred             ----HHHHHHHHHHHHHHhhhceeccccchHhhccHHHHHHHHhhccccchhhhhhhhhhhhhhHHHHHhhhhccCCcce
Confidence                34689999999999999999999999999999999999999999998655544444333 3355577777788765


Q ss_pred             ecCCh--hhhhhhcccccchhhhHHHHHHHHhhC-HHHHHHHHHHHHHhcccCCCChHHHHHHHHhhcCCCHHHH----H
Q 006262          379 EVHRA--DEIDQVFDAISYNKGSAVIRMLQSYLG-EDIFQKSLSLYMKKYAWKNVETEDLWSVLSEESGINITSL----M  451 (653)
Q Consensus       379 ~~~~~--~~~~~~f~~i~Y~Kg~~vl~mL~~~lG-~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~sg~~l~~~----~  451 (653)
                      ++...  .+++..|+.++|.||++||+||+..|| ++.|+++||.|+++|++++++++||++++++++|.++..+    |
T Consensus       157 ~~~~~~~~~~~~~f~~~~Y~Kga~vl~mL~~~iG~~~~f~~~lr~yl~~~~~~~~~~~df~~~l~~~~~~~~~~~~~~~f  236 (252)
T d3b7sa3         157 LVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVEKFSYKSITTDDWKDFLYSYFKDKVDVLNQVDW  236 (252)
T ss_dssp             SSCCCTTCCHHHHCSSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTEEECHHHHHHHHHHHTGGGHHHHTTSCH
T ss_pred             eeccccccchhhcccceeecchhHHHHHHHHHhccHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccccchhhHhHH
Confidence            54332  334567999999999999999999999 6789999999999999999999999999999999999998    9


Q ss_pred             HHHhcCCCcceEEEE
Q 006262          452 ECWTKQKGHPVVYVN  466 (653)
Q Consensus       452 ~~W~~~~G~P~l~v~  466 (653)
                      ++|++++|||+|+|+
T Consensus       237 ~~W~~~~G~P~l~v~  251 (252)
T d3b7sa3         237 NAWLYSPGLPPIKPN  251 (252)
T ss_dssp             HHHHHCCSSCSSCCC
T ss_pred             HHHhcCCCCCeeecc
Confidence            999999999999885
>d3b7sa2 b.98.1.1 (A:1-208) Leukotriene A4 hydrolase N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u4ga_ d.92.1.2 (A:) Elastase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1bqba_ d.92.1.2 (A:) Aureolysin {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1kjpa_ d.92.1.2 (A:) Thermolysin {Bacillus thermoproteolyticus [TaxId: 1427]} Back     information, alignment and structure