Citrus Sinensis ID: 006315

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-
MGAIKLELRCPQKVDGIAIDPEPDWSFDALLSELNSLETRLNASSKPVPFTKTKSREISTGKSVESNARAFVIRVSDDELENDNERKGEEVHNGSLVAVKRFTCDALYLSESDDSDDDVALGGESYLMDEVGLADGALVELTHQHQLGVKEEIRNLISTLETQLISENEQSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDAAYEEAKRKERALQEEKIRQEKVKAEAEMQAKLRAEEAKRAALEAEKRAAKEAAEREAAENSKRITAGVSQDGACGRQPDDSSVIAGAQSRGSRSDGTKKLQSAVRATESALNIEQKRLQKLKELDEENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQTEIPGVQNAHGLKEGWAWLARFLNALPANIYTAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFLNALKAREDSKLNLVIAEIQYYIEDKKFLEEPEGRTLQAPPLSSTLVPEADYQEYGRYHQYQEYGYQYH
ccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccHHHHcccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHccccccccccccccccHHHHHccccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccHHHHHHHHHcccccccccccccccccccccHHHHHHHHcEEccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHccccccc
ccEEEEEcccccccccEEccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccEcccccEEEEEEccccccccccccccccccEEEEccccccccccEcccccccccHcccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccEEEEccccccccccccHHHHHHHcccEccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccccccccccHHHccccccccccccccccccccccc
mgaiklelrcpqkvdgiaidpepdwSFDALLSELNSLETrlnasskpvpftktksreistgksvesNARAFVIRVsddelendnerkgeevhngsLVAVKRFTCDalylsesddsdddvalggesylmdevglADGALVELTHQHQLGVKEEIRNLISTLETQLISENEQSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDAAYEEAKRKERALQEEKIRQEKVKAEAEMQAKLRAEEAKRAALEAEKRAAKEAAEREAAENSkritagvsqdgacgrqpddssviagaqsrgsrsdgTKKLQSAVRATESALNIEQKRLQKLKELDEEnqslklssnedfsgyEKDISRLIRQIRGLKDNVRTKASELVKIlnnplcpqsislaTFSKKVVsrcetpddnvamSCGYVIVLVASQVPQVMDILLGEFHRAciytvpkhivfseaaFESEEAYYKTIGyreedgkiESLENYLSRLKSYMRLYAALIQTeipgvqnahgLKEGWAWLARFLNALPANIYTAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFLNALKAREDSKLNLVIAEIQYYIEDkkfleepegrtlqapplsstlvpeadyqeygryhqyqeygyqyh
MGAIKLELRCPQKVDGIAIDPEPDWSFDALLSELNSLEtrlnasskpvpftktksreistgksvesnarafvirvsddelendnerkgeevhngslvavKRFTCDALYLSESDDSDDDVALGGESYLMDEVGLADGALVELTHQHQLGVKEEIRNLISTLETqliseneqsnsalaqvekdrdmrremdrKNDTVYQRKIAEaldnhltavqrdhelksqieerkirsdaayeEAKRKERALQEEKIRQEKVKAEAEMQAKLRAEEAKRAALEAEKRAAKEAAereaaenskritagvsqdgacgrqPDDSSVIagaqsrgsrsdgtkKLQSAVRATESALNIEQKRLQKLKEldeenqslklssnedfsgyeKDISRLIRQIRGLKDNVRTKASELVKilnnplcpqsiSLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIgyreedgkieSLENYLSRLKSYMRLYAALIQTEIPGVQNAHGLKEGWAWLARFLNALPANIYTAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFLNALKAREDSKLNLVIAEIQYYIEDKKfleepegrtlqapplsstlvpEADYQEYGRYHQYQEYGYQYH
MGAIKLELRCPQKVDGIAIDPEPDWSFDALLSELNSLETRLNASSKPVPFTKTKSREISTGKSVESNARAFVIRVSDDELENDNERKGEEVHNGSLVAVKRFTCDALYLSEsddsdddVALGGESYLMDEVGLADGALVELTHQHQLGVKEEIRNLISTLETQLISENEQSNSALAQVekdrdmrremdrkndTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDaayeeakrkeraLQEEKIRQEKVKAEAEMQaklraeeakraaleaekraakeaaereaaeNSKRITAGVSQDGACGRQPDDSSVIAGAQSRGSRSDGTKKLQSAVRATESALNIEQKRLQKLKELDEENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVfseaafeseeaYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQTEIPGVQNAHGLKEGWAWLARFLNALPANIYTAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFLNALKAREDSKLNLVIAEIQYYIEDKKFLEEPEGRTLQAPPLSSTLVPEADyqeygryhqyqeygyqyh
*******LRCPQKVDGIAIDPEPDWSFDALL**************************************************************GSLVAVKRFTCDALYLS********VALGGESYLMDEVGLADGALVELTHQHQLGVKEEIRNLISTLET********************************************************************************************************************************************************************************************************************DISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQTEIPGVQNAHGLKEGWAWLARFLNALPANIYTAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFLNALKAREDSKLNLVIAEIQYYIEDKKFL********************ADYQEYGRYHQYQEYGY***
******************IDPEPDWSFDALLS***********************************************************************************************************************************************************************************************************************************************************************************************************SAVRATESALNIEQKRLQKLKE************************************************NNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQTEIPGVQNAHGLKEGWAWLARFLNALPANIYTAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFLNA*************AEIQYYIEDKKFLE*********************YQEYGRYHQYQ*YGY***
MGAIKLELRCPQKVDGIAIDPEPDWSFDALLSELNSLETRLNASS******************VESNARAFVIRVSDDELENDNERKGEEVHNGSLVAVKRFTCDALYLSESDDSDDDVALGGESYLMDEVGLADGALVELTHQHQLGVKEEIRNLISTLETQLISENEQSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDA***********LQEEKIRQEKVKAEAEMQAKLRAE****************************ITAGVSQDGACGRQPDDSSV************************ESALNIEQKRLQKLKELDEENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQTEIPGVQNAHGLKEGWAWLARFLNALPANIYTAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFLNALKAREDSKLNLVIAEIQYYIEDKKFLEEPEGRTLQAPPLSSTLVPEADYQEYGRYHQYQEYGYQYH
*GAIKLELRCPQKVDGIAIDPEPDWSFDALLSELNSLETRLNA***********************NARAFV***S**************VHNGSLVAVKRFTCDALYLSES*DSDD*VALGGESYLMDEVGLADGALVELTHQHQLGVKEEIRNLISTLETQLISENEQSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDAAYEEAKRKERALQEE**R*E*VK*******************************************************************GSRSDGTKKLQSAVRATESALNIEQKRLQKLKELDEENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQTEIPGVQNAHGLKEGWAWLARFLNALPANIYTAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFLNALKAREDSKLNLVIAEIQYYIEDKKFLEEPEGRTLQAPPLSSTLVPEADYQEYGRYHQYQEYGYQYH
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MGAIKLELRCPQKVDGIAIDPEPDWSFDALLSELNSLETRLNASSKPVPFTKTKSREISTGKSVESNARAFVIRVSDDELENDNERKGEEVHNGSLVAVKRFTCDALYLSESDDSDDDVALGGESYLMDEVGLADGALVELTHQHQLGVxxxxxxxxxxxxxxxxxxxxxSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDAAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKRITAGVSQDGACGRQPDDSSVIAGAQSRGSRSDGTKKLQSAxxxxxxxxxxxxxxxxxxxxxDEENQSLKLSSNEDxxxxxxxxxxxxxxxxxxxxxVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQTEIPGVQNAHGLKEGWAWLARFLNALPANIYTAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFLNALKAREDSKLNLVIAEIQYYIEDKKFLEEPEGRTLQAPPLSSTLVPEADYQEYGRYHQYQEYGYQYH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query651 2.2.26 [Sep-21-2011]
Q5RAS2698 Nucleoporin GLE1 OS=Pongo yes no 0.262 0.244 0.352 1e-25
Q53GS7698 Nucleoporin GLE1 OS=Homo yes no 0.262 0.244 0.352 1e-25
Q8R322699 Nucleoporin GLE1 OS=Mus m yes no 0.262 0.244 0.358 2e-25
Q4KLN4698 Nucleoporin GLE1 OS=Rattu no no 0.262 0.244 0.352 3e-25
Q3ZBK7698 Nucleoporin GLE1 OS=Bos t yes no 0.262 0.244 0.342 2e-24
Q6DRB1695 Nucleoporin GLE1 OS=Danio yes no 0.267 0.250 0.326 3e-23
Q9V4W1677 Nucleoporin GLE1 OS=Droso yes no 0.308 0.296 0.283 4e-15
>sp|Q5RAS2|GLE1_PONAB Nucleoporin GLE1 OS=Pongo abelii GN=GLE1 PE=2 SV=1 Back     alignment and function desciption
 Score =  119 bits (297), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 66/187 (35%), Positives = 104/187 (55%), Gaps = 16/187 (8%)

Query: 435 GYVIVLVASQV----PQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREE 490
            + I +VAS +    P+V D++L   H+ C Y+VP +  F E    + E Y + +GY+ +
Sbjct: 499 AFPIAVVASGIWELHPRVGDLILAHLHKKCPYSVPFYPTFKEGM--ALEDYQRMLGYQVK 556

Query: 491 DGKIESLENYLSRLKSYMRLYAALIQTEIPGVQ----NAHGLKEGWAWLARFLNALPANI 546
           D K+E  +N+L R+   +RLYAA+IQ   P       + HGL  GW WLA+ LN  P + 
Sbjct: 557 DSKVEQQDNFLKRMSGMIRLYAAIIQLRWPYGNRQEIHPHGLNHGWRWLAQILNMEPLSD 616

Query: 547 YTAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFLNALKAREDSKLNLVIAEIQYYIE 606
            TA  L  FL++ G AL K+Y+ QF K+L  I +++   ++A   S       ++  +I 
Sbjct: 617 VTATLLFDFLEVCGNALMKQYQVQFWKMLILIKEDYFPRIEAITSS------GQMGSFIR 670

Query: 607 DKKFLEE 613
            K+FLE+
Sbjct: 671 LKQFLEK 677
Required for the export of mRNAs containing poly(A) tails from the nucleus into the cytoplasm. May be involved in the terminal step of the mRNA transport through the nuclear pore complex (NPC).
Pongo abelii (taxid: 9601)
>sp|Q53GS7|GLE1_HUMAN Nucleoporin GLE1 OS=Homo sapiens GN=GLE1 PE=1 SV=2 Back     alignment and function description
>sp|Q8R322|GLE1_MOUSE Nucleoporin GLE1 OS=Mus musculus GN=Gle1 PE=2 SV=2 Back     alignment and function description
>sp|Q4KLN4|GLE1_RAT Nucleoporin GLE1 OS=Rattus norvegicus GN=Gle1 PE=2 SV=1 Back     alignment and function description
>sp|Q3ZBK7|GLE1_BOVIN Nucleoporin GLE1 OS=Bos taurus GN=GLE1 PE=2 SV=1 Back     alignment and function description
>sp|Q6DRB1|GLE1_DANRE Nucleoporin GLE1 OS=Danio rerio GN=gle1 PE=2 SV=2 Back     alignment and function description
>sp|Q9V4W1|GLE1_DROME Nucleoporin GLE1 OS=Drosophila melanogaster GN=GLE1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query651
296081385701 unnamed protein product [Vitis vinifera] 0.970 0.901 0.612 0.0
359473158680 PREDICTED: uncharacterized protein LOC10 0.969 0.927 0.614 0.0
147859341745 hypothetical protein VITISV_036820 [Viti 0.975 0.852 0.587 0.0
255547998613 Nucleoporin GLE1, putative [Ricinus comm 0.926 0.983 0.594 0.0
356538127629 PREDICTED: uncharacterized protein LOC10 0.906 0.937 0.535 1e-172
449435436641 PREDICTED: uncharacterized protein LOC10 0.967 0.982 0.545 1e-168
357463209599 Nucleoporin GLE1 [Medicago truncatula] g 0.854 0.928 0.515 1e-155
15222184611 embryo defective 1745 protein [Arabidops 0.920 0.980 0.478 1e-150
297849694614 EMB1745 [Arabidopsis lyrata subsp. lyrat 0.915 0.970 0.480 1e-148
4850395635 EST gb|N37870 comes from this gene [Arab 0.930 0.954 0.468 1e-147
>gi|296081385|emb|CBI16818.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  753 bits (1943), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/658 (61%), Positives = 491/658 (74%), Gaps = 26/658 (3%)

Query: 1   MGAIKLELRCPQKVDGI-AIDPEPDWSFDALLSELNSLETRLNASSK-PVPFTKTKSREI 58
           MGA+KLELRCPQ  +GI A DPEPDWSF+AL+SELNSLE +LN+SS  P+PFTKT+SR +
Sbjct: 40  MGAVKLELRCPQNENGIIAADPEPDWSFEALVSELNSLELKLNSSSIFPIPFTKTESRGL 99

Query: 59  STGKSVESNARAFVIRVSDDELENDNERKG--EEVHNGSLVAVKRFTCDALYLSESDDSD 116
           S   +V+    AFV+RVSDDE+E D ER+G  E V++ SLVA  RF CD LYLS   DSD
Sbjct: 100 S---NVKKGPTAFVMRVSDDEME-DVEREGGVEGVYDRSLVAGSRFACDELYLS---DSD 152

Query: 117 DDVALGGESYLMDEVGLADGALVELTHQHQLGVKEEIRNLISTLETQLISENEQSNSALA 176
           D+  L  + +LMD+ G+A+GA  ELTH+HQL VKEE+R  IS LET L  E ++S SA+ 
Sbjct: 153 DESNLHDQFHLMDKAGVAEGAFFELTHEHQLAVKEEVRTQISVLETDLTHERKKSTSAIV 212

Query: 177 QVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDAAYEEAK 236
           +VEK  + RREMDRK D  YQR IAEALDNH+TAVQRDHE +SQIEER+IR++AA+EEA 
Sbjct: 213 RVEKYIEARREMDRKLDIQYQRNIAEALDNHMTAVQRDHEHRSQIEERRIRNEAAFEEA- 271

Query: 237 RKERALQEEKIRQEKVKAEA----EMQAKLRAEEAKRAALEAEKRAAKEAAEREAAENSK 292
           RKE+ALQEEK+RQEK KAEA    E+ AK RAEEAK AALE E+RAAKEAAERE    S 
Sbjct: 272 RKEKALQEEKLRQEKAKAEAKVRLELAAKKRAEEAKIAALEDERRAAKEAAEREGIGAST 331

Query: 293 RITAGVSQDGACGRQPDDSSVIAGAQSRGSRSDGTKKLQSA---VRATESALNIEQKRLQ 349
           R    V+   A G Q D S  I  AQ  GS++DGTKK QSA   +++ ESAL +EQ+RLQ
Sbjct: 332 RAATEVAPKEATGHQRDASLGILNAQLNGSKTDGTKKAQSAGNILKSAESALKLEQERLQ 391

Query: 350 KLKELDEENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQS 409
           K KE DE+ Q+L  SSN+DF  +E+  +R IRQI G K+NVRTK + L+K+ N+PLCPQ 
Sbjct: 392 KYKEFDEKTQALGQSSNKDFQRHEQQFARRIRQISGSKENVRTKGNALIKMFNDPLCPQP 451

Query: 410 ISLATFSKKVVSRCETPDDN-VAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHI 468
           I++A F KKVVS  E    + V  +CG+VIV VASQVP  MD+LL E HR CIYTVPKHI
Sbjct: 452 INVAIFVKKVVSYFEVDQPSKVTYACGHVIVFVASQVPYAMDLLLAELHRVCIYTVPKHI 511

Query: 469 VFSEAAFESEEAYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQTEIPGVQNAHGL 528
            +S++AF+S+E YYK IGYREE+GKIE  E+YL RL  YM+LYAAL+QTE  GV+N HGL
Sbjct: 512 DYSKSAFKSKEDYYKMIGYREENGKIERTEDYLKRLACYMKLYAALVQTEADGVKNPHGL 571

Query: 529 KEGWAWLARFLNALPANIYTAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFLNALKA 588
           KEGWAWLARFLNALPAN+YTAVAL  FLQ+AGFALF+KY+SQFRKIL  I  NFL ALKA
Sbjct: 572 KEGWAWLARFLNALPANVYTAVALEVFLQVAGFALFRKYRSQFRKILKVISGNFLVALKA 631

Query: 589 R----EDSKLNLVIAEIQYYIEDKKFLEEPEGRTLQAPPLSSTLVPEADYQEYGRYHQ 642
           +    ++ KL  VI  IQYY+E  +FL+EPEG  +Q   LS ++ PE DY +   YH 
Sbjct: 632 QGEKVKEPKLKQVIGNIQYYVEKNEFLQEPEGWRMQGSLLSGSMAPELDYPD--SYHH 687

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359473158|ref|XP_002282194.2| PREDICTED: uncharacterized protein LOC100245667 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147859341|emb|CAN81849.1| hypothetical protein VITISV_036820 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255547998|ref|XP_002515056.1| Nucleoporin GLE1, putative [Ricinus communis] gi|223546107|gb|EEF47610.1| Nucleoporin GLE1, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356538127|ref|XP_003537556.1| PREDICTED: uncharacterized protein LOC100802744 [Glycine max] Back     alignment and taxonomy information
>gi|449435436|ref|XP_004135501.1| PREDICTED: uncharacterized protein LOC101216938 [Cucumis sativus] Back     alignment and taxonomy information
>gi|357463209|ref|XP_003601886.1| Nucleoporin GLE1 [Medicago truncatula] gi|355490934|gb|AES72137.1| Nucleoporin GLE1 [Medicago truncatula] Back     alignment and taxonomy information
>gi|15222184|ref|NP_172771.1| embryo defective 1745 protein [Arabidopsis thaliana] gi|110737727|dbj|BAF00802.1| hypothetical protein [Arabidopsis thaliana] gi|332190851|gb|AEE28972.1| embryo defective 1745 protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297849694|ref|XP_002892728.1| EMB1745 [Arabidopsis lyrata subsp. lyrata] gi|297338570|gb|EFH68987.1| EMB1745 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|4850395|gb|AAD31065.1|AC007357_14 EST gb|N37870 comes from this gene [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query651
TAIR|locus:2031835611 GLE1 [Arabidopsis thaliana (ta 0.617 0.657 0.404 8.2e-106
UNIPROTKB|B3KMG0444 GLE1 "Nucleoporin GLE1" [Homo 0.399 0.585 0.290 5.2e-20
UNIPROTKB|F1RR80698 GLE1 "Uncharacterized protein" 0.448 0.418 0.282 7.4e-20
UNIPROTKB|E2RSW4697 GLE1 "Uncharacterized protein" 0.459 0.428 0.289 2e-19
UNIPROTKB|Q53GS7698 GLE1 "Nucleoporin GLE1" [Homo 0.399 0.372 0.290 2e-19
ZFIN|ZDB-GENE-040831-4717 gle1 "GLE1 RNA export mediator 0.271 0.246 0.335 3.6e-19
RGD|1310843697 Gle1-ps1 "GLE1 RNA export medi 0.313 0.292 0.327 4.4e-19
MGI|MGI:1921662699 Gle1 "GLE1 RNA export mediator 0.405 0.377 0.290 4.4e-19
RGD|1307329698 Gle1 "GLE1 RNA export mediator 0.443 0.414 0.282 5.7e-19
UNIPROTKB|Q3ZBK7698 GLE1 "Nucleoporin GLE1" [Bos t 0.405 0.378 0.286 1.6e-18
TAIR|locus:2031835 GLE1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 723 (259.6 bits), Expect = 8.2e-106, Sum P(2) = 8.2e-106
 Identities = 175/433 (40%), Positives = 248/433 (57%)

Query:     1 MGAIKLELRCPQKVDGIAIDPEPDWSFDALLSELNSLETRLNASSK-PVPFTKTKSREIS 59
             MG + LE  CP+ VDGI+IDPEP+W+F++L++E+ S+E +LN  S  P P T T  R   
Sbjct:     1 MGIV-LEPPCPKSVDGISIDPEPNWNFESLVAEIASVEKKLNGFSMYPQPITNTTLR--- 56

Query:    60 TGKSVESNARAFVIRVSDDELEND-----NERKGEEVHNGSLVAVKRFTCDALYLSEXXX 114
              G+        FV+ VS+DE+E+D     ++ + EE H+    A KRF CD LYLS+   
Sbjct:    57 MGR----RGGGFVMHVSEDEMESDEGEESDDEEEEEDHSQICTAGKRFACDELYLSDESD 112

Query:   115 XXXXVALGGESYLMDEVGLADGALVELTHQHQLGVKEEIRNLISTLETQLISENEQSNSA 174
                        Y+M+++GLA+ AL E+ + HQ  +K++IRN +S +ET++++E E S SA
Sbjct:   113 EEFDHE---PEYMMNKLGLAESALYEVINDHQTEIKDDIRNQVSVVETEIMNEIETSLSA 169

Query:   175 LAQVXXXXXXXXXXXXXXXTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDXXXXX 234
             +A+V                 YQRK+AEALD HLTAVQR+H++KSQIEERKIRS+     
Sbjct:   170 IARVEKYSETRKEVERKLDLQYQRKVAEALDTHLTAVQREHKIKSQIEERKIRSEEAQEE 229

Query:   235 XXXXXXXLQEEKIRQEKVKAEAEMQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSKRI 294
                     QEEKIRQEK +AEA+M                               + K  
Sbjct:   230 ARRKERAHQEEKIRQEKARAEAQM----LAKIRAEEEKKEVERKAAREVAEKEVADRKAA 285

Query:   295 TAGVSQDGACGRQPDDSSVIAGAQSRGSRSDGTKKLQSAVRATESALNIEQKRLQKLKEL 354
                +++  A       SS  + AQ+ G+          ++RA ESAL +E  RL+KL+EL
Sbjct:   286 EQKLAEQKAVIESVTGSSATSNAQAGGN----------SIRAAESALILENHRLKKLEEL 335

Query:   355 DEENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLAT 414
             +  NQSLK  SNE+FS +EK I R+IRQI G KD+V  K +++VKI  +P CP SIS+A 
Sbjct:   336 ETTNQSLKSRSNENFSSFEKHIGRVIRQISGTKDSVSGKINDIVKIFKDPRCPVSISIAA 395

Query:   415 FSKKVVSRCETPD 427
             F+KK+V+  E P+
Sbjct:   396 FAKKMVTTKEKPN 408
GO:0005634 "nucleus" evidence=ISM
GO:0005643 "nuclear pore" evidence=IEA
GO:0009793 "embryo development ending in seed dormancy" evidence=NAS
GO:0005515 "protein binding" evidence=IPI
GO:0005635 "nuclear envelope" evidence=IDA
GO:0006312 "mitotic recombination" evidence=RCA
GO:0009560 "embryo sac egg cell differentiation" evidence=RCA
GO:0048316 "seed development" evidence=IMP
UNIPROTKB|B3KMG0 GLE1 "Nucleoporin GLE1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1RR80 GLE1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E2RSW4 GLE1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q53GS7 GLE1 "Nucleoporin GLE1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040831-4 gle1 "GLE1 RNA export mediator homolog (yeast)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|1310843 Gle1-ps1 "GLE1 RNA export mediator homolog (yeast), pseudogene 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1921662 Gle1 "GLE1 RNA export mediator (yeast)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1307329 Gle1 "GLE1 RNA export mediator homolog (yeast)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q3ZBK7 GLE1 "Nucleoporin GLE1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query651
pfam07817249 pfam07817, GLE1, GLE1-like protein 4e-71
PRK09510387 PRK09510, tolA, cell envelope integrity inner memb 3e-06
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 4e-06
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 5e-06
TIGR02794346 TIGR02794, tolA_full, TolA protein 9e-06
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-05
TIGR02794346 TIGR02794, tolA_full, TolA protein 2e-05
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 2e-05
TIGR02794346 TIGR02794, tolA_full, TolA protein 3e-05
TIGR02794346 TIGR02794, tolA_full, TolA protein 4e-05
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 1e-04
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 5e-04
PRK05035695 PRK05035, PRK05035, electron transport complex pro 5e-04
PRK09510387 PRK09510, tolA, cell envelope integrity inner memb 0.001
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 0.001
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 0.001
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 0.001
COG5269379 COG5269, ZUO1, Ribosome-associated chaperone zuoti 0.001
PTZ001212084 PTZ00121, PTZ00121, MAEBL; Provisional 0.002
COG3064387 COG3064, TolA, Membrane protein involved in colici 0.003
PRK12472508 PRK12472, PRK12472, hypothetical protein; Provisio 0.003
PRK09510387 PRK09510, tolA, cell envelope integrity inner memb 0.004
TIGR02794346 TIGR02794, tolA_full, TolA protein 0.004
COG0419 908 COG0419, SbcC, ATPase involved in DNA repair [DNA 0.004
>gnl|CDD|219595 pfam07817, GLE1, GLE1-like protein Back     alignment and domain information 
 Score =  230 bits (588), Expect = 4e-71
 Identities = 89/261 (34%), Positives = 129/261 (49%), Gaps = 21/261 (8%)

Query: 330 LQSAVRATESALNIEQKRLQKLKELDEENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDN 389
            ++ +   +SA+ +   R  +LK+L    +          S     ++R+  ++  L   
Sbjct: 1   YKNKIEQIKSAVKLPLNRDPELKKLRFTLKRKINPKFGQLSNSSSQLARITNKLSQL--- 57

Query: 390 VRTKASELVKILNNPLCPQSISLATFSKKVVSRCETP---DDNVAMSCGYVIVLVASQVP 446
                  +    N+        L  F+KK+VS+ ET        A     V +L+ SQ P
Sbjct: 58  -------ISVAKNDHPLAYKWILNFFAKKIVSQAETEVAVKPEAAFPLAAVALLLLSQFP 110

Query: 447 QVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREEDG-KIESLENYLSRLK 505
           +  D+LL   H+ C Y VPKH  ++ +     E   K +GY+  DG K E   +YL R+ 
Sbjct: 111 EFGDLLLARLHKKCPYVVPKHPGYTCSI--DTEDGRKRMGYKRTDGGKWEDETSYLERMA 168

Query: 506 SYMRLYAALIQTEIPGVQNA---HGLKEGWAWLARFLNALPANI--YTAVALNAFLQLAG 560
             MRLYAA+IQTEIPG  N    HGL+ GW WLAR LN  PA +    A  L +FL+ AG
Sbjct: 169 GIMRLYAAIIQTEIPGGSNTTHPHGLEHGWRWLARILNTPPALLTNTHATILASFLEAAG 228

Query: 561 FALFKKYKSQFRKILDNIYDN 581
           FAL +KY  QFRK+L  I ++
Sbjct: 229 FALLRKYGKQFRKLLKVIQED 249

The members of this family are sequences that are similar to the human protein GLE1. This protein is localised at the nuclear pore complexes and functions in poly(A)+ RNA export to the cytoplasm. Length = 249
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein Back     alignment and domain information
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC; Provisional Back     alignment and domain information
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|237110 PRK12472, PRK12472, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional Back     alignment and domain information
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 651
KOG2412591 consensus Nuclear-export-signal (NES)-containing p 100.0
PF07817256 GLE1: GLE1-like protein; InterPro: IPR012476 The m 100.0
KOG2412591 consensus Nuclear-export-signal (NES)-containing p 97.55
PTZ00121 2084 MAEBL; Provisional 97.54
PTZ001212084 MAEBL; Provisional 97.46
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 97.14
KOG01631259 consensus Myosin class VI heavy chain [Cytoskeleto 96.85
PRK09510387 tolA cell envelope integrity inner membrane protei 96.6
KOG01631259 consensus Myosin class VI heavy chain [Cytoskeleto 96.44
PTZ00266 1021 NIMA-related protein kinase; Provisional 96.4
COG3064387 TolA Membrane protein involved in colicin uptake [ 96.27
PF02854209 MIF4G: MIF4G domain; InterPro: IPR003890 This entr 96.07
PRK09510387 tolA cell envelope integrity inner membrane protei 95.71
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 95.7
COG3064387 TolA Membrane protein involved in colicin uptake [ 95.67
PTZ002661021 NIMA-related protein kinase; Provisional 95.58
smart00543200 MIF4G Middle domain of eukaryotic initiation facto 94.02
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 93.24
KOG0742630 consensus AAA+-type ATPase [Posttranslational modi 92.73
KOG4364811 consensus Chromatin assembly factor-I [Chromatin s 92.27
PF05262489 Borrelia_P83: Borrelia P83/100 protein; InterPro: 91.42
KOG4364811 consensus Chromatin assembly factor-I [Chromatin s 90.69
PF05262489 Borrelia_P83: Borrelia P83/100 protein; InterPro: 90.46
KOG1144 1064 consensus Translation initiation factor 5B (eIF-5B 89.78
KOG2140 739 consensus Uncharacterized conserved protein [Gener 89.59
COG4942420 Membrane-bound metallopeptidase [Cell division and 89.3
PF05672171 MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604 87.84
KOG2072988 consensus Translation initiation factor 3, subunit 87.02
PF12037276 DUF3523: Domain of unknown function (DUF3523); Int 85.95
KOG3054299 consensus Uncharacterized conserved protein [Funct 85.45
KOG20021018 consensus TPR-containing nuclear phosphoprotein th 83.6
COG2268548 Uncharacterized protein conserved in bacteria [Fun 82.73
COG4942420 Membrane-bound metallopeptidase [Cell division and 82.43
COG5269379 ZUO1 Ribosome-associated chaperone zuotin [Transla 82.29
PRK00247429 putative inner membrane protein translocase compon 81.2
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification] Back     alignment and domain information 
Probab=100.00  E-value=5.1e-98  Score=804.38  Aligned_cols=566  Identities=36%  Similarity=0.550  Sum_probs=482.2

Q ss_pred             CCccccccCCCCccCccccCCCCCCCHHHHHHHHHHHHHHhccCC-CCcccccccccccccCccccccccceEEEecccc
Q 006315            1 MGAIKLELRCPQKVDGIAIDPEPDWSFDALLSELNSLETRLNASS-KPVPFTKTKSREISTGKSVESNARAFVIRVSDDE   79 (651)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~dp~p~w~~~~~~~e~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~fv~r~~~~~   79 (651)
                      || +.|+..||.+++|++|||+|+|+|.||++++.|.+.+||+++ +|+|+|.++-+.       ++++..|||.|++|+
T Consensus         1 e~-~pl~ep~p~s~~~~~id~epn~~fpdl~a~~as~~~~l~~~gk~~~~~t~~~v~d-------~~~~~~~~~~~~e~e   72 (591)
T KOG2412|consen    1 EG-IPLEEPCPKSVDGISIDPEPNWNFPDLVAEIASVEKKLNGFGKYPQPITNTTVRD-------GRRGGGFVMHVSEDE   72 (591)
T ss_pred             CC-CCCCCCCCCCcccccCCCCCCCCchhHHHHhhhhhhhhcccCCCccHHHHHHHHh-------hhccCCccchhHHHH
Confidence            56 789999999999999999999999999999999999999999 999999887776       678999999999999


Q ss_pred             ccccc-----cccccccccCccccccceecccccccCCCCCccccccCCcc-ccccccccchhhhHHhhhhhccccHHHH
Q 006315           80 LENDN-----ERKGEEVHNGSLVAVKRFTCDALYLSESDDSDDDVALGGES-YLMDEVGLADGALVELTHQHQLGVKEEI  153 (651)
Q Consensus        80 ~~~~~-----~~~~~~~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~~~~-~l~~~~~~~~~~l~e~~~~~~~~~~e~~  153 (651)
                      ++++.     +...++.+++.+++|++|+|+.||++|.++++    +++++ +.|++.++..+.    .++|++.+..++
T Consensus        73 ~~~~~~~~sq~~l~e~~~s~~~~a~t~m~~~qL~~~~~~~~~----~~~e~~~~l~~L~~~~~~----~~q~~~~~~~~~  144 (591)
T KOG2412|consen   73 MESDEGEESQDELEEEDHSQKCTAGTRMACAQLYLSDESDEE----FDHENEQDLNKLGLKESA----INQRQTEIKSDI  144 (591)
T ss_pred             HHhcccccccCcccCcchhHhhhccchhHHHHHHHHHHhhhh----hhcchhhhHHHHHHhhcc----chhhhHhHHhhh
Confidence            98765     55678899999999999999999999988777    77788 888999999888    499999999999


Q ss_pred             HHHHHHHHHHHHh-HhhhhHHHHHhhHHHHHhHHHHhhhccHHHHHHHHHHHhhhhhHHhhhHHHHhHHHHHHhhhHHHH
Q 006315          154 RNLISTLETQLIS-ENEQSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDAAY  232 (651)
Q Consensus       154 r~~~~~~e~~~~~-e~~~~~~~~~~~~k~~~~r~e~~r~~~~~~qr~~ae~~~~~~~~~qr~~e~~~q~~~r~~r~~aa~  232 (651)
                      |.++..+..-..+ ++.+..+....++++.++|.|+.+++ .++|+++...+|+|++.++|.+++.+||.+|++++++..
T Consensus       145 ~~ki~~~~~pea~~~~~~n~e~~~l~~~~~e~~~~~~~r~-~e~Q~qv~qsl~~el~~i~~~~q~~eqi~~~~~~~e~kr  223 (591)
T KOG2412|consen  145 RAKILNSPLPEANQEIETNAENIRLVEKLSETRKEVKRRL-LEEQNQVLQSLDTELQAIQREKQRKEQIRERKERSEEKR  223 (591)
T ss_pred             hhhhhcCCChHHHHHHHhhHHHHHhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            9999887765555 78888999999999999999999999 999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCCcc
Q 006315          233 EEAKRKERALQEEKIRQEKVKAEAEMQAKLRAEEAKRAALEAEKRAAKEAAEREAAENSKRITAGVSQDGACGRQPDDSS  312 (651)
Q Consensus       233 eea~r~e~~~~ee~~~q~~ak~eae~~a~~~ae~~~k~a~ea~~k~a~e~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (651)
                      +||.|+++++|||+.+++...++++++++.|++|+++   |.+.|++.++.+.+...- ++...+.+          .+.
T Consensus       224 ~Eaerk~~~~qEe~Rqk~d~~~~~~eqekiR~~eekq---eee~ke~e~~~~k~~q~~-~~~eek~a----------~qk  289 (591)
T KOG2412|consen  224 EEAERKRRAHQEELRQKEDEEAELQEQEKIRAEEEKQ---EEERKEAEEQAEKEVQDP-KAHEEKLA----------EQK  289 (591)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCc-hhcccccc----------ccc
Confidence            9999999999999999999999999999999987662   223333332221111100 00001111          111


Q ss_pred             cccccccCCCCCCcchhhhhhHHhhHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccCcchh-HH
Q 006315          313 VIAGAQSRGSRSDGTKKLQSAVRATESALNIEQKRLQKLKELDEENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDN-VR  391 (651)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~sal~~~~~R~k~LKel~~~~~~lks~lkk~~~~~kRqI~~kIGQLTns~~Q-I~  391 (651)
                      ...|.+...+..|-..--++...++.+.+....-+.++..++++           -..+++|+||+.|||||++..| |.
T Consensus       290 ~~~~~~~~~~~~ds~m~w~~~d~i~q~k~d~v~pi~~kd~~lk~-----------~~~~~kr~in~~~~qis~~~~q~L~  358 (591)
T KOG2412|consen  290 AVIEKVTTSSASDSQMFWNSQDAIAQSKLDLVNPILKKDEELKN-----------YNQSLKRAINPPFSQISKSNGQVLR  358 (591)
T ss_pred             cccccccCCchhHHHhhhhHHHHHHHHHHHHHhhhhhHHHHHHH-----------HHHHHHhhcCCChhhhhhccHHHHH
Confidence            11222222222222222233456677777777777666555444           4458899999999999999998 99


Q ss_pred             HHHHHHHHHhcCCC-----ChHHHHHHHHHHHHHhhccCC---CCCcchhHHHHHHHHHhhCccHHHHHHHHhhhcceee
Q 006315          392 TKASELVKILNNPL-----CPQSISLATFSKKVVSRCETP---DDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYT  463 (651)
Q Consensus       392 ~Is~eL~~lL~~~q-----lP~~i~Ln~lAKaIVsQaEt~---~~~sAfPLA~V~v~L~~~~Pef~DILLArf~kkCP~l  463 (651)
                      .|++.|..++++.+     +.+.||+|+|||++|+|+|++   +|.+|||||.|++.||++||+|+|+|||||||+|||+
T Consensus       359 qI~dkl~s~~~~~~~~~~pl~~~~~~~~iaka~V~Q~Etev~~~PeaAfPla~V~l~i~~q~Pdv~dlllA~l~KkCP~~  438 (591)
T KOG2412|consen  359 QIFDKLDSLFGGIPDIVDPLAYDWCLNFIAKAFVKQAETEVASKPEAAFPLAKVILYIWSQFPDVGDLLLARLHKKCPYV  438 (591)
T ss_pred             HHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhCchHHHHHHHHHHhcCCcc
Confidence            99999999998743     458899999999999999994   6789999999999999999999999999999999999


Q ss_pred             ccccccccccccccHHHHHHHcCccc-CCCcccchhhHHHHHHHHHHHHHHHHhcCCC----CCCCCCCcchHHHHHHHH
Q 006315          464 VPKHIVFSEAAFESEEAYYKTIGYRE-EDGKIESLENYLSRLKSYMRLYAALIQTEIP----GVQNAHGLKEGWAWLARF  538 (651)
Q Consensus       464 VP~~~~~~k~~~qSeEey~K~mGYr~-~dG~~Ese~~YlkRMtGI~rLYAAIiqt~~~----g~~nP~gi~~~WkWLARI  538 (651)
                      ||||++.      ++|.|.|+|||+. ++|+||..+.|++||+||+||||||++++.|    +.-||||+.+||.|||||
T Consensus       439 VPf~~~~------~~Eq~~k~mGyk~~d~nk~Eqnd~YleRm~Gi~rLYAAIi~l~~p~~~~~~~hpf~i~~gW~wLA~i  512 (591)
T KOG2412|consen  439 VPFHIVN------STEQYQKMMGYKAWDSNKWEQNDAYLERMDGIMRLYAAIIQLDIPVGNATNVHPFGINHGWAWLARI  512 (591)
T ss_pred             ccccccC------cHHHHHHhhcccccccccccccchHHHHhHhHHHHHHHHHHhcccccCCCCCCcchhhcccHHHHHH
Confidence            9999874      3799999999996 6789999999999999999999999999986    345899999999999999


Q ss_pred             hCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCchhHHHHHHHHHHHHhcccccCCC
Q 006315          539 LNALPANIYTAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFLNALKAREDSKLNLVIAEIQYYIEDKKFLEEPE  615 (651)
Q Consensus       539 LN~~P~~~ita~vL~afLEvAG~~L~~~YG~QF~KLL~lI~~d~~p~L~~~~~p~a~~~v~rLe~~Led~~~l~ePE  615 (651)
                      ||+.|.+++||++|.+||++||+.|++.||+||.|||.+|.++|+|++.++++.|..++.+.|+.|| |+++...|+
T Consensus       513 ln~~p~~~~tatll~s~Lq~aG~~L~q~Yg~Qf~Klli~i~E~y~~r~~a~~~~g~~rl~ill~~~l-~~q~~~~~~  588 (591)
T KOG2412|consen  513 LNKIPLLDTTATLLNSFLQTAGFGLLQRYGSQFLKLLILIREHYLPRLAAKKDTGDLRLRILLEAWL-DRQYLKEPE  588 (591)
T ss_pred             hCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHH-Hhhhhcccc
Confidence            9999999999999999999999999999999999999999999999999998777789999999999 888888887

>PF07817 GLE1: GLE1-like protein; InterPro: IPR012476 The members of this family are sequences that are similar to the human protein GLE1 (O75458 from SWISSPROT) Back     alignment and domain information
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification] Back     alignment and domain information
>PTZ00121 MAEBL; Provisional Back     alignment and domain information
>PTZ00121 MAEBL; Provisional Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton] Back     alignment and domain information
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional Back     alignment and domain information
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton] Back     alignment and domain information
>PTZ00266 NIMA-related protein kinase; Provisional Back     alignment and domain information
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain Back     alignment and domain information
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PTZ00266 NIMA-related protein kinase; Provisional Back     alignment and domain information
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G) Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics] Back     alignment and domain information
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins Back     alignment and domain information
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics] Back     alignment and domain information
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins Back     alignment and domain information
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only] Back     alignment and domain information
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>PF05672 MAP7: MAP7 (E-MAP-115) family; InterPro: IPR008604 The organisation of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs) Back     alignment and domain information
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised Back     alignment and domain information
>KOG3054 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK00247 putative inner membrane protein translocase component YidC; Validated Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query651
3pev_B297 Nucleoporin GLE1; RECA, heat, DEAD-BOX, ATPase, he 7e-53
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-08
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 4e-07
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-06
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 4e-04
2zuo_A861 MVP, major vault protein; repeat domains, protein- 1e-06
2zuo_A861 MVP, major vault protein; repeat domains, protein- 1e-05
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 4e-06
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 2e-04
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 2e-04
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 6e-05
>3pev_B Nucleoporin GLE1; RECA, heat, DEAD-BOX, ATPase, helicase, mRNA export, nuclear hydrolase; HET: IHP; 2.50A {Saccharomyces cerevisiae} PDB: 3peu_B* 3pex_B* 3pez_B* 3rrm_B* 3rrn_B* Length = 297 Back     alignment and structure
 Score =  182 bits (464), Expect = 7e-53
 Identities = 42/267 (15%), Positives = 97/267 (36%), Gaps = 26/267 (9%)

Query: 345 QKRLQKLKELDEENQSLKLSSNEDFSGYEKDISRLIR----QIRGLKDNVRTKASELVKI 400
                K+ ++ ++       ++ +         R I     Q+      +    +EL ++
Sbjct: 13  WHYKDKIAQIKQDIVLPIKKADVNVRNLLSRHKRKINPKFGQLTNSNQQLFKIQNELTQL 72

Query: 401 LNNPLCPQSIS---LATFSKKVVSRCET---PDDNVAMSCGYVIVLVASQVPQVMDILLG 454
           +N+           L   +K VV + ET        A+  G + + +  Q P++ ++ + 
Sbjct: 73  INDTKGDSLAYHWILNFIAKAVVHQAETEVRVKPESALPLGKLTLYLLVQFPELQELFMA 132

Query: 455 EFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYR-EEDGKIESLENYLSRLKSYMRLYAA 513
              + C + +              E   + +G++   + K E   +Y  R+   + L+A 
Sbjct: 133 RLVKKCPFVIGFTCE------IDTEKGRQNMGWKRNNENKWEDNTSYDERMGGILSLFAI 186

Query: 514 LIQTEIP-----GVQNAHGLKEGWAWLARFLNALPANIYTAVA---LNAFLQLAGFALFK 565
           + + ++P        +   +   W  LAR  N  P N+ T      L ++   A     +
Sbjct: 187 ITRLQLPQEFITTTSHPFPIALSWHILARICN-TPLNLITNTHFVILGSWWDAAAVQFLQ 245

Query: 566 KYKSQFRKILDNIYDNFLNALKAREDS 592
            Y +Q  K+L  I +   + +  ++  
Sbjct: 246 AYGNQASKLLILIGEELTSRMAEKKYV 272
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query651
3pev_B297 Nucleoporin GLE1; RECA, heat, DEAD-BOX, ATPase, he 100.0
3rk6_A234 Polyadenylate-binding protein-interacting protein; 87.98
1hu3_A260 EIF4GII; heat repeat, translation; 2.37A {Homo sap 85.53
2vso_E284 Eukaryotic initiation factor 4F subunit P150; acet 82.16
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 81.24
>3pev_B Nucleoporin GLE1; RECA, heat, DEAD-BOX, ATPase, helicase, mRNA export, nuclear hydrolase; HET: IHP; 2.50A {Saccharomyces cerevisiae} PDB: 3peu_B* 3pex_B* 3pez_B* 3rrm_B* 3rrn_B* Back     alignment and structure
Probab=100.00  E-value=1.8e-64  Score=522.47  Aligned_cols=264  Identities=16%  Similarity=0.273  Sum_probs=232.8

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHH-HhhhccccccccccccccccccccccccCcchhHHHHHHHHHHHhcCC---CChHH
Q 006315          334 VRATESALNIEQKRLQKLKELDE-ENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNP---LCPQS  409 (651)
Q Consensus       334 ~~~~~sal~~~~~R~k~LKel~~-~~~~lks~lkk~~~~~kRqI~~kIGQLTns~~QI~~Is~eL~~lL~~~---qlP~~  409 (651)
                      |.+.+..+..|+.+++.||..-. ..+..++++|+.++++||+||++|||||+|.+||++|+++|.++|++.   ++|+.
T Consensus         5 ~~~~~~~~~~y~~~i~~ik~~v~~~~~~~n~~lK~~~~~~kR~I~~~igQLt~s~~qi~~i~~~L~~ll~~~~~~~~~~~   84 (297)
T 3pev_B            5 FDKISKMFWHYKDKIAQIKQDIVLPIKKADVNVRNLLSRHKRKINPKFGQLTNSNQQLFKIQNELTQLINDTKGDSLAYH   84 (297)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTHHHHHHSCHHHHHHHHHHHHHHTTHHHHCCSBHHHHHHHHHHHHHHHHTTTTSHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhccchhccccCCHHHHHHHHHHHHHHHhCccCCchHHH
Confidence            78889999999999999987443 233346689999999999999999999999999999999999999864   46688


Q ss_pred             HHHHHHHHHHHhhccCC---CCCcchhHHHHHHHHHhhCccHHHHHHHHhhhcceeeccccccccccccccHHHHHHHcC
Q 006315          410 ISLATFSKKVVSRCETP---DDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIG  486 (651)
Q Consensus       410 i~Ln~lAKaIVsQaEt~---~~~sAfPLA~V~v~L~~~~Pef~DILLArf~kkCP~lVP~~~~~~k~~~qSeEey~K~mG  486 (651)
                      |+||+|||+||+|||++   ++++|||+|.|++.||..||+|+|+||||||++|||+||||++     .+| ++|+++||
T Consensus        85 ~~ln~lAK~iV~Q~e~ev~~~p~sA~PlA~v~~~l~~~~p~~~dillA~l~k~CP~~vp~~~~-----~~t-eegr~~mG  158 (297)
T 3pev_B           85 WILNFIAKAVVHQAETEVRVKPESALPLGKLTLYLLVQFPELQELFMARLVKKCPFVIGFTCE-----IDT-EKGRQNMG  158 (297)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHSTTHHHHHHHHHHHHCGGGGTCCCC-----CSS-HHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHhccCCcccchHHHHHHHHHHhCccHHHHHHHHHhhcCCcccccCCC-----ccc-HHHHHHcC
Confidence            89999999999999995   6789999999999999999999999999999999999999974     234 67888999


Q ss_pred             ccc-CCCcccchhhHHHHHHHHHHHHHHHHhcCCC-----CCCCCCCcchHHHHHHHHhCCCCCccc---hHHHHHHHHH
Q 006315          487 YRE-EDGKIESLENYLSRLKSYMRLYAALIQTEIP-----GVQNAHGLKEGWAWLARFLNALPANIY---TAVALNAFLQ  557 (651)
Q Consensus       487 Yr~-~dG~~Ese~~YlkRMtGI~rLYAAIiqt~~~-----g~~nP~gi~~~WkWLARILN~~P~~~i---ta~vL~afLE  557 (651)
                      |+. +||+||++++|++||+||++|||||+++++|     +.+||||++++|+|||||||++|. .+   |++||++||+
T Consensus       159 ~~~~~dg~~E~~~~y~~Rm~Gi~~lyAAI~~~~~~~~~~~~~~~p~~~~~~W~wLArilN~~p~-~~t~t~~~vL~~~Le  237 (297)
T 3pev_B          159 WKRNNENKWEDNTSYDERMGGILSLFAIITRLQLPQEFITTTSHPFPIALSWHILARICNTPLN-LITNTHFVILGSWWD  237 (297)
T ss_dssp             CCBCTTSCBCCHHHHHHHHHHHHHHHHHHHHSCCCTTTTTTSCCSSCTHHHHHHHHHHHTSCGG-GCCHHHHHHHHHHHH
T ss_pred             CeeCCCCCcccHHHHHHHHHHHHHHHHHHHhCcCcccccccCCCCCCchHHHHHHHHHhCCCHH-hhcccHHHHHHHHHH
Confidence            986 5899999999999999999999999999854     467999999999999999999554 44   4559999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCchhHHHHHHHHHHHHhc
Q 006315          558 LAGFALFKKYKSQFRKILDNIYDNFLNALKAREDSKLNLVIAEIQYYIEDK  608 (651)
Q Consensus       558 vAG~~L~~~YG~QF~KLL~lI~~d~~p~L~~~~~p~a~~~v~rLe~~Led~  608 (651)
                      +||++|+++||+||.|||++|.++|+|++++++.++    ++||+.+++++
T Consensus       238 ~ag~~l~~~Yg~Qf~KlL~~i~~~~~~~l~~~~~~~----a~RL~~l~e~~  284 (297)
T 3pev_B          238 AAAVQFLQAYGNQASKLLILIGEELTSRMAEKKYVG----AARLRILLEAW  284 (297)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHTHHHHHTGGGCCHH----HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCcc----HHHHHHHHHHH
Confidence            999999999999999999999999999999876544    45555555554
>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens} Back     alignment and structure
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14 Back     alignment and structure
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E* Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 651
d2es4d1280 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) 0.001

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query651
d1hu3a_243 Eukaryotic initiation factor eIF4G {Human (Homo sa 86.48
>d1hu3a_ a.118.1.14 (A:) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Eukaryotic initiation factor eIF4G
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.48  E-value=0.51  Score=43.48  Aligned_cols=177  Identities=8%  Similarity=0.051  Sum_probs=93.5

Q ss_pred             ccccccccccccccccCcchhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhhccCCCCCcchhHHHHHHHHHhhCcc-
Q 006315          369 FSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVPQ-  447 (651)
Q Consensus       369 ~~~~kRqI~~kIGQLTns~~QI~~Is~eL~~lL~~~qlP~~i~Ln~lAKaIVsQaEt~~~~sAfPLA~V~v~L~~~~Pe-  447 (651)
                      ...++|+|+-.+|.||.  +.+..|..+|..+-..  .+  -.+..++..|+..|-.+ |..+..+|.++..|...+|. 
T Consensus         8 ~~~l~r~v~~lLNKLt~--~n~~~i~~ei~~l~~~--~~--~~l~~~v~~I~~kai~e-~~f~~~YA~Lc~~l~~~~~~~   80 (243)
T d1hu3a_           8 TQELFRKVRSILNKLTP--QMFNQLMKQVSGLTVD--TE--ERLKGVIDLVFEKAIDE-PSFSVAYANMCRCLVTLKVPM   80 (243)
T ss_dssp             HHHHHHHHHHHHTCSSC--CCHHHHHHHHTTCCCC--SH--HHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHTTCCCC-
T ss_pred             HHHHHHHHHHHHhhCCH--HHHHHHHHHHHHHHcc--CH--HHHHHHHHHHHHHHHcC-ccccHHHHHHHHHHHHhcCcc
Confidence            34678888888999974  4566777777665322  22  23555666666666543 35777888888888777664 


Q ss_pred             ---------HHHHHHHHhhhcceeeccccccccccccccHHHHHHHcCccc----CCCcccchhhHHHHHHHHHHHHHHH
Q 006315          448 ---------VMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYRE----EDGKIESLENYLSRLKSYMRLYAAL  514 (651)
Q Consensus       448 ---------f~DILLArf~kkCP~lVP~~~~~~k~~~qSeEey~K~mGYr~----~dG~~Ese~~YlkRMtGI~rLYAAI  514 (651)
                               |+..|+.+++..    +-...................++...    .+...+.....-.|+.|++++.+-+
T Consensus        81 ~~~~~~~~~F~~~Ll~~~q~~----F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~k~~~~g~i~figeL  156 (243)
T d1hu3a_          81 ADKPGNTVNFRKLLLNRCQKE----FEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGEL  156 (243)
T ss_dssp             --------CHHHHHHHHHHHH----HHHHTC------------------------------CCSSHHHHHHHHHHHHHHH
T ss_pred             ccccccchHHHHHHHHHHHHH----HHHhhhhhhhhHhhhcccccccchHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence                     555665555332    11110000000000000000000000    0011122345678999999999998


Q ss_pred             HhcCCCCCCCCCCcchHHHH-HHHHhCCCCCccchHHHHHHHHHHHHHHHHH
Q 006315          515 IQTEIPGVQNAHGLKEGWAW-LARFLNALPANIYTAVALNAFLQLAGFALFK  565 (651)
Q Consensus       515 iqt~~~g~~nP~gi~~~WkW-LARILN~~P~~~ita~vL~afLEvAG~~L~~  565 (651)
                      .....      .+ ...... +..++.. | .....-+|..+|.++|..|-.
T Consensus       157 y~~~~------v~-~~~i~~~l~~Ll~~-~-~e~~ie~l~~lL~~~G~~L~~  199 (243)
T d1hu3a_         157 FKLKM------LT-EAIMHDCVVKLLKN-H-DEESLECLCRLLTTIGKDLDF  199 (243)
T ss_dssp             HTTTC------SC-HHHHHHHHHHHHHS-C-SHHHHHHHHHHHHHHHHHHCC
T ss_pred             Hcccc------ch-HHHHHHHHHHhcCC-C-CHHHHHHHHHHHHHHHHHHhc
Confidence            86542      11 123333 3334433 3 344677888899999998843