Citrus Sinensis ID: 006331

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650
MEAKRKKNSNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKILKPLCAETLSRTSARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPSLEMINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKCFNINDNGMIPLAQYSQNLKQINLSYCSVTDVGLIALASINCLQNMTILHVVGLTPNGLVNALLRCQGLIKVKLNASFRPLLPQSFLHYMEAQNFLFLWRDKAFPGEN
ccccccccccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHcccccccEEEcccccccccHHHHHHHHccccccccEEEEcccccccHHHHHHHHHccccccEEEEcccccccHHHHHHHHccccccEEEccccccccHHHHHHHHHccccccEEEEcccccccHHHHHHHHHccccccEEEcccccccccccccccccccccEEEccccccccHHHHHHHHHccccccEEEEccccccccHHHHHHHHccccccEEEccccccccHHHHHHHcccccccEEEEccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHccccccEEEEccccccHHHHHHHHccccccEEEEcccccccHHHHHHHHcccccccEEEEcccccccHHHHHHHHHccccccEEEEEccccccHHHHHHHHccccccEEEEcccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHccccccEEEEEcccccHHHHHHHHccccccEEEEcccccccHHHHHHHHHccccccEEEEEccccccccHHHHHHHHHcccEEEEccccccccc
cccccccccccHHHccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHcccccccEEEEccccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHcccccEEEccccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHccccccEEEcccccccHHHHHHHHccccccEEEccccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHccccccEEEcccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHccccccEEEcccccccHHHHHHHHccccccEEEccccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHccccccEEEEcccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHHcccccEEEEccccccHHHHHHHHccccccEEEccccccccHHHHHHHHHHcccccEEEccccccccccHHHHHHHHHcccEEEEEcccccccc
meakrkknsnpfdflsEEIIFNILDhlnndpfarksfSLTCRNFYSIESRHRKILKPLCAetlsrtsarypfitqldlslcpranddalsivsssswKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTeidlsngtemGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIrtldlsylpitekclppvvklQYLEDLVLegchgidddglASVEYSCKSLKALnlskcqnishvglssliKGADYLQQLILAYSFWVSADlskclhnfpmlqsikfedcpvarsGIKAIGNwhgslkelslskcsgvtdeELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQcqyleelditenevndeGLKSisrcsklsslklgicsnitdeglkhvgstcsMLKELDLyrssgitdVGVVAVshgcpsleMINIAYNERITDTSLISLSECLRLKvleirgcprisaIGLSAIAMGCRQLAMLDIKKcfnindngmiplAQYSQNLKQINLSYCSVTDVGLIALASINCLQNMTILHVVGLTPNGLVNALLRCQGLIKVklnasfrpllpqsFLHYMEAQNFLFlwrdkafpgen
meakrkknsnpfdfLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKILKPLCAETLSRTSARYPFITQLDLSLCPRANDDALsivsssswkltLRSINLsrsrlftkvglssltvnCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQShkelrkldITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPSLEMINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKCFNINDNGMIPLAQYSQNLKQINLSYCSVTDVGLIALASINCLQNMTILHVVGLTPNGLVNALLRCQGLIKVKLNASFRPLLPQSFLHYMEAQNFLFLWRDKAFPGEN
MEAKRKKNSNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKILKPLCAETLSRTSARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDaaaaaiaeaKNLERLWLARCKLITDLGIGRIAAccrklkllclkwcIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPSLEMINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKCFNINDNGMIPLAQYSQNLKQINLSYCSVTDVGLIALASINCLQNMTILHVVGLTPNGLVNALLRCQGLIKVKLNASFRPLLPQSFLHYMEAQNFLFLWRDKAFPGEN
***********FDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKILKPLCAETLSRTSARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPSLEMINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKCFNINDNGMIPLAQYSQNLKQINLSYCSVTDVGLIALASINCLQNMTILHVVGLTPNGLVNALLRCQGLIKVKLNASFRPLLPQSFLHYMEAQNFLFLWRDK******
**************LSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKILKPLCAETLSRTSARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPSLEMINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKCFNINDNGMIPLAQYSQNLKQINLSYCSVTDVGLIALASINCLQNMTILHVVGLTPNGLVNALLRCQGLIKVKLNASFRPLLPQSFLHYMEAQNFLFLWRDKAF****
*********NPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKILKPLCAETLSRTSARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPSLEMINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKCFNINDNGMIPLAQYSQNLKQINLSYCSVTDVGLIALASINCLQNMTILHVVGLTPNGLVNALLRCQGLIKVKLNASFRPLLPQSFLHYMEAQNFLFLWRDKAFPGEN
********SNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKILKPLCAETLSRTSARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPSLEMINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKCFNINDNGMIPLAQYSQNLKQINLSYCSVTDVGLIALASINCLQNMTILHVVGLTPNGLVNALLRCQGLIKVKLNASFRPLLPQSFLHYMEAQNFLFLWRDKAF****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MEAKRKKNSNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKILKPLCAETLSRTSARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPSLEMINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKCFNINDNGMIPLAQYSQNLKQINLSYCSVTDVGLIALASINCLQNMTILHVVGLTPNGLVNALLRCQGLIKVKLNASFRPLLPQSFLHYMEAQNFLFLWRDKAFPGEN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query650 2.2.26 [Sep-21-2011]
Q8RWU5665 F-box/LRR-repeat protein yes no 0.995 0.972 0.562 1e-179
Q9C5D2610 F-box/LRR-repeat protein no no 0.873 0.931 0.255 2e-37
Q8BH16423 F-box/LRR-repeat protein yes no 0.444 0.683 0.310 2e-31
A6H779423 F-box/LRR-repeat protein no no 0.444 0.683 0.297 3e-30
Q5R3Z8423 F-box/LRR-repeat protein yes no 0.395 0.607 0.314 3e-30
Q9UKC9423 F-box/LRR-repeat protein yes no 0.395 0.607 0.314 3e-30
Q96IG2436 F-box/LRR-repeat protein no no 0.4 0.596 0.306 3e-30
Q58DG6436 F-box/LRR-repeat protein yes no 0.4 0.596 0.306 3e-30
Q9CZV8436 F-box/LRR-repeat protein no no 0.4 0.596 0.306 6e-30
P34284466 Uncharacterized F-box/LRR yes no 0.390 0.545 0.329 4e-26
>sp|Q8RWU5|FBL3_ARATH F-box/LRR-repeat protein 3 OS=Arabidopsis thaliana GN=FBL3 PE=2 SV=1 Back     alignment and function desciption
 Score =  630 bits (1624), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 365/649 (56%), Positives = 474/649 (73%), Gaps = 2/649 (0%)

Query: 2   EAKRKKNSNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKILKPLCAE 61
           + K+ +   PFD LSEE++F ILD ++ +P   KSFSLTC++FY +ES+HR  LKPL ++
Sbjct: 3   KVKQIRVLKPFDLLSEELVFIILDLISPNPSDLKSFSLTCKSFYQLESKHRGSLKPLRSD 62

Query: 62  TLSRTSARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLT 121
            L R   RY   T LDL+ CPR  D ALS+V   S   TLRS++LSRS  F+  GL  L 
Sbjct: 63  YLPRILTRYRNTTDLDLTFCPRVTDYALSVVGCLSGP-TLRSLDLSRSGSFSAAGLLRLA 121

Query: 122 VNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLL 181
           + C  L EIDLSN TEM DA AA +AEA++LERL L RCK++TD+GIG IA  C+KL  +
Sbjct: 122 LKCVNLVEIDLSNATEMRDADAAVVAEARSLERLKLGRCKMLTDMGIGCIAVGCKKLNTV 181

Query: 182 CLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDD 241
            LKWC+ V DLGV L+A+KC++IRTLDLSYLPIT KCL  ++KLQ+LE+L+LEGC G+DD
Sbjct: 182 SLKWCVGVGDLGVGLLAVKCKDIRTLDLSYLPITGKCLHDILKLQHLEELLLEGCFGVDD 241

Query: 242 DGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAY-SFWVSADLSKCLH 300
           D L S+ + CKSLK L+ S CQN++H GL+SL+ GA YLQ+L L++ S  +S D +  L 
Sbjct: 242 DSLKSLRHDCKSLKKLDASSCQNLTHRGLTSLLSGAGYLQRLDLSHCSSVISLDFASSLK 301

Query: 301 NFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLD 360
               LQSI+ + C V   G+KAIG    SLKE+SLSKC  VTDE LS +V   K+LRKLD
Sbjct: 302 KVSALQSIRLDGCSVTPDGLKAIGTLCNSLKEVSLSKCVSVTDEGLSSLVMKLKDLRKLD 361

Query: 361 ITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVND 420
           ITCCRK++  SI  I  +C  L SL+ME C LVS EAF LIGQ+C+ LEELD+T+NE++D
Sbjct: 362 ITCCRKLSRVSITQIANSCPLLVSLKMESCSLVSREAFWLIGQKCRLLEELDLTDNEIDD 421

Query: 421 EGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHG 480
           EGLKSIS C  LSSLKLGIC NITD+GL ++G  CS L+ELDLYRS GITDVG+  ++ G
Sbjct: 422 EGLKSISSCLSLSSLKLGICLNITDKGLSYIGMGCSNLRELDLYRSVGITDVGISTIAQG 481

Query: 481 CPSLEMINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDI 540
           C  LE INI+Y + ITD SL+SLS+C  L+  E RGCP I++ GL+AIA+ C++LA +D+
Sbjct: 482 CIHLETINISYCQDITDKSLVSLSKCSLLQTFESRGCPNITSQGLAAIAVRCKRLAKVDL 541

Query: 541 KKCFNINDNGMIPLAQYSQNLKQINLSYCSVTDVGLIALASINCLQNMTILHVVGLTPNG 600
           KKC +IND G++ LA +SQNLKQIN+S  +VT+VGL++LA+I CLQN+ +++  GL P+G
Sbjct: 542 KKCPSINDAGLLALAHFSQNLKQINVSDTAVTEVGLLSLANIGCLQNIAVVNSSGLRPSG 601

Query: 601 LVNALLRCQGLIKVKLNASFRPLLPQSFLHYMEAQNFLFLWRDKAFPGE 649
           +  ALL C GL K KL+AS R LLP S +H++EA+   FLW+D     E
Sbjct: 602 VAAALLGCGGLRKAKLHASLRSLLPLSLIHHLEARGCAFLWKDNTLQAE 650

Arabidopsis thaliana (taxid: 3702)
>sp|Q9C5D2|FBL4_ARATH F-box/LRR-repeat protein 4 OS=Arabidopsis thaliana GN=FBL4 PE=2 SV=1 Back     alignment and function description
>sp|Q8BH16|FBXL2_MOUSE F-box/LRR-repeat protein 2 OS=Mus musculus GN=Fbxl2 PE=1 SV=1 Back     alignment and function description
>sp|A6H779|FBXL2_BOVIN F-box/LRR-repeat protein 2 OS=Bos taurus GN=FBXL2 PE=2 SV=1 Back     alignment and function description
>sp|Q5R3Z8|FBXL2_PONAB F-box/LRR-repeat protein 2 OS=Pongo abelii GN=FBXL2 PE=2 SV=1 Back     alignment and function description
>sp|Q9UKC9|FBXL2_HUMAN F-box/LRR-repeat protein 2 OS=Homo sapiens GN=FBXL2 PE=1 SV=3 Back     alignment and function description
>sp|Q96IG2|FXL20_HUMAN F-box/LRR-repeat protein 20 OS=Homo sapiens GN=FBXL20 PE=1 SV=2 Back     alignment and function description
>sp|Q58DG6|FXL20_BOVIN F-box/LRR-repeat protein 20 OS=Bos taurus GN=FBXL20 PE=2 SV=2 Back     alignment and function description
>sp|Q9CZV8|FXL20_MOUSE F-box/LRR-repeat protein 20 OS=Mus musculus GN=Fbxl20 PE=1 SV=3 Back     alignment and function description
>sp|P34284|YKK7_CAEEL Uncharacterized F-box/LRR-repeat protein C02F5.7 OS=Caenorhabditis elegans GN=C02F5.7 PE=4 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query650
224146675649 predicted protein [Populus trichocarpa] 0.981 0.983 0.704 0.0
449463292663 PREDICTED: F-box/LRR-repeat protein 3-li 0.98 0.960 0.647 0.0
449530965661 PREDICTED: LOW QUALITY PROTEIN: F-box/LR 0.98 0.963 0.645 0.0
297745808702 unnamed protein product [Vitis vinifera] 0.989 0.915 0.650 0.0
225434419668 PREDICTED: F-box/LRR-repeat protein 3-li 0.989 0.962 0.650 0.0
224140535668 predicted protein [Populus trichocarpa] 0.986 0.959 0.647 0.0
255571507669 F-box protein, atfbl3, putative [Ricinus 0.996 0.968 0.631 0.0
224091068666 predicted protein [Populus trichocarpa] 0.984 0.960 0.636 0.0
356551924652 PREDICTED: F-box/LRR-repeat protein 3-li 0.984 0.981 0.616 0.0
225439576663 PREDICTED: F-box/LRR-repeat protein 3 [V 0.992 0.972 0.637 0.0
>gi|224146675|ref|XP_002326094.1| predicted protein [Populus trichocarpa] gi|222862969|gb|EEF00476.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  895 bits (2313), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/639 (70%), Positives = 532/639 (83%), Gaps = 1/639 (0%)

Query: 8   NSNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKILKPLCAETLSRTS 67
           N NPFDFL+EEIIF ILD+LN+DPFA+KSFSLTC+ FYSIES HRK LKPL AE L RT 
Sbjct: 10  NCNPFDFLTEEIIFTILDYLNDDPFAKKSFSLTCKAFYSIESHHRKTLKPLRAELLLRTL 69

Query: 68  ARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFL 127
            RYP I  LDL++CPR  D  L++VS +  K  L SINLSRSR FT +GLSSL  +C  L
Sbjct: 70  HRYPHIEHLDLTVCPRIEDRMLNVVSLAC-KDALCSINLSRSRFFTNIGLSSLVSSCFNL 128

Query: 128 TEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCI 187
            EIDLSNG E+ D AAAAIAEAKNLE+LWLARCKLITDLGIG +A  CRKL+L+CLKWC+
Sbjct: 129 VEIDLSNGVELNDLAAAAIAEAKNLEKLWLARCKLITDLGIGCVAVGCRKLRLICLKWCL 188

Query: 188 RVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASV 247
           +++DLGV+L+ALKC+EIR+LDLSYL ITEKCLP +++LQ+LEDLVLEGC GI+DDGL+++
Sbjct: 189 KISDLGVQLLALKCKEIRSLDLSYLQITEKCLPSILQLQHLEDLVLEGCLGINDDGLSTL 248

Query: 248 EYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQS 307
           + SCKSLK  N+S C N SHVGL SLI GA+ L++L LAY   V+ADL+KCLHNF  L S
Sbjct: 249 QQSCKSLKTFNMSNCHNHSHVGLLSLINGAENLRELTLAYGPSVTADLAKCLHNFSGLHS 308

Query: 308 IKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKI 367
           +KF+ C V  SGI+AIGNW  SLKELS SKCSGV D+ LSF+VQ HKELRKLDITCCR I
Sbjct: 309 VKFDGCLVKCSGIRAIGNWPNSLKELSFSKCSGVADDSLSFLVQGHKELRKLDITCCRMI 368

Query: 368 TYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSIS 427
            Y S++SIT +C SLTSLRME C LV  EAFVL GQ+CQ +EELD+T+ +++DEGLKSIS
Sbjct: 369 MYDSVDSITSSCCSLTSLRMESCSLVPKEAFVLFGQRCQLMEELDVTDTKIDDEGLKSIS 428

Query: 428 RCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPSLEMI 487
           RCSKLSSLKLGIC NITD GLKH+GS CS LKELDLYRS GITD G+ AV+ GCP LE+I
Sbjct: 429 RCSKLSSLKLGICMNITDNGLKHIGSRCSKLKELDLYRSLGITDEGIAAVTFGCPDLEVI 488

Query: 488 NIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKCFNIN 547
           NIAYN+++TD SLISLS C RL+VLEIRGCP +S+ GLSAIA+GCRQL +LDIKKCFNIN
Sbjct: 489 NIAYNDKVTDASLISLSRCSRLRVLEIRGCPHVSSKGLSAIAVGCRQLMVLDIKKCFNIN 548

Query: 548 DNGMIPLAQYSQNLKQINLSYCSVTDVGLIALASINCLQNMTILHVVGLTPNGLVNALLR 607
           D  M+ LAQ+SQNLKQINLSYCSVTDVGL+ALAS+N LQN+T+LH+ GLTPNGL  ALL 
Sbjct: 549 DTAMLSLAQFSQNLKQINLSYCSVTDVGLLALASVNRLQNITVLHLGGLTPNGLAAALLA 608

Query: 608 CQGLIKVKLNASFRPLLPQSFLHYMEAQNFLFLWRDKAF 646
           C+G+ KVKL+ASF+PL+P+S L Y+EA   +F WRDKAF
Sbjct: 609 CRGITKVKLHASFKPLIPKSLLGYIEAHGCVFHWRDKAF 647

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449463292|ref|XP_004149368.1| PREDICTED: F-box/LRR-repeat protein 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449530965|ref|XP_004172462.1| PREDICTED: LOW QUALITY PROTEIN: F-box/LRR-repeat protein 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297745808|emb|CBI15864.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225434419|ref|XP_002277506.1| PREDICTED: F-box/LRR-repeat protein 3-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224140535|ref|XP_002323638.1| predicted protein [Populus trichocarpa] gi|222868268|gb|EEF05399.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255571507|ref|XP_002526701.1| F-box protein, atfbl3, putative [Ricinus communis] gi|223534001|gb|EEF35723.1| F-box protein, atfbl3, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224091068|ref|XP_002309168.1| predicted protein [Populus trichocarpa] gi|222855144|gb|EEE92691.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356551924|ref|XP_003544322.1| PREDICTED: F-box/LRR-repeat protein 3-like [Glycine max] Back     alignment and taxonomy information
>gi|225439576|ref|XP_002265215.1| PREDICTED: F-box/LRR-repeat protein 3 [Vitis vinifera] gi|297735597|emb|CBI18091.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query650
TAIR|locus:2149805665 AT5G01720 "AT5G01720" [Arabido 0.995 0.972 0.542 2.4e-179
TAIR|locus:2143320642 AT5G27920 "AT5G27920" [Arabido 0.96 0.971 0.340 4.2e-95
TAIR|locus:505006471610 AT4G15475 "AT4G15475" [Arabido 0.693 0.739 0.261 2.6e-38
MGI|MGI:1919429423 Fbxl2 "F-box and leucine-rich 0.444 0.683 0.310 1e-36
RGD|1562243422 Fbxl2 "F-box and leucine-rich 0.444 0.684 0.314 1.3e-36
UNIPROTKB|Q9UKC9423 FBXL2 "F-box/LRR-repeat protei 0.444 0.683 0.300 1e-35
UNIPROTKB|Q5R3Z8423 FBXL2 "F-box/LRR-repeat protei 0.444 0.683 0.300 1e-35
UNIPROTKB|F1PWK1422 FBXL2 "Uncharacterized protein 0.444 0.684 0.300 1e-35
UNIPROTKB|A6H779423 FBXL2 "F-box/LRR-repeat protei 0.444 0.683 0.297 3.7e-35
UNIPROTKB|Q58DG6436 FBXL20 "F-box/LRR-repeat prote 0.444 0.662 0.290 1.3e-34
TAIR|locus:2149805 AT5G01720 "AT5G01720" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1741 (617.9 bits), Expect = 2.4e-179, P = 2.4e-179
 Identities = 352/649 (54%), Positives = 458/649 (70%)

Query:     2 EAKRKKNSNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKILKPLCAE 61
             + K+ +   PFD LSEE++F ILD ++ +P   KSFSLTC++FY +ES+HR  LKPL ++
Sbjct:     3 KVKQIRVLKPFDLLSEELVFIILDLISPNPSDLKSFSLTCKSFYQLESKHRGSLKPLRSD 62

Query:    62 TLSRTSARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLT 121
              L R   RY   T LDL+ CPR  D ALS+V   S   TLRS++LSRS  F+  GL  L 
Sbjct:    63 YLPRILTRYRNTTDLDLTFCPRVTDYALSVVGCLSGP-TLRSLDLSRSGSFSAAGLLRLA 121

Query:   122 VNCRFLTEIDLSNGTEMGDXXXXXXXXXKNLERLWLARCKLITDLGIGRIAAXXXXXXXX 181
             + C  L EIDLSN TEM D         ++LERL L RCK++TD+GIG IA         
Sbjct:   122 LKCVNLVEIDLSNATEMRDADAAVVAEARSLERLKLGRCKMLTDMGIGCIAVGCKKLNTV 181

Query:   182 XXXXXIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDD 241
                  + V DLGV L+A+KC++IRTLDLSYLPIT KCL  ++KLQ+LE+L+LEGC G+DD
Sbjct:   182 SLKWCVGVGDLGVGLLAVKCKDIRTLDLSYLPITGKCLHDILKLQHLEELLLEGCFGVDD 241

Query:   242 DGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAY-SFWVSADLSKCLH 300
             D L S+ + CKSLK L+ S CQN++H GL+SL+ GA YLQ+L L++ S  +S D +  L 
Sbjct:   242 DSLKSLRHDCKSLKKLDASSCQNLTHRGLTSLLSGAGYLQRLDLSHCSSVISLDFASSLK 301

Query:   301 NFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLD 360
                 LQSI+ + C V   G+KAIG    SLKE+SLSKC  VTDE LS +V   K+LRKLD
Sbjct:   302 KVSALQSIRLDGCSVTPDGLKAIGTLCNSLKEVSLSKCVSVTDEGLSSLVMKLKDLRKLD 361

Query:   361 ITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVND 420
             ITCCRK++  SI  I  +C  L SL+ME C LVS EAF LIGQ+C+ LEELD+T+NE++D
Sbjct:   362 ITCCRKLSRVSITQIANSCPLLVSLKMESCSLVSREAFWLIGQKCRLLEELDLTDNEIDD 421

Query:   421 EGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHG 480
             EGLKSIS C  LSSLKLGIC NITD+GL ++G  CS L+ELDLYRS GITDVG+  ++ G
Sbjct:   422 EGLKSISSCLSLSSLKLGICLNITDKGLSYIGMGCSNLRELDLYRSVGITDVGISTIAQG 481

Query:   481 CPSLEMINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDI 540
             C  LE INI+Y + ITD SL+SLS+C  L+  E RGCP I++ GL+AIA+ C++LA +D+
Sbjct:   482 CIHLETINISYCQDITDKSLVSLSKCSLLQTFESRGCPNITSQGLAAIAVRCKRLAKVDL 541

Query:   541 KKCFNINDNGMIPLAQYSQNLKQINLSYCSVTDVGLIALASINCLQNMTILHVVGLTPNG 600
             KKC +IND G++ LA +SQNLKQIN+S  +VT+VGL++LA+I CLQN+ +++  GL P+G
Sbjct:   542 KKCPSINDAGLLALAHFSQNLKQINVSDTAVTEVGLLSLANIGCLQNIAVVNSSGLRPSG 601

Query:   601 LVNALLRCQGLIKVKLNASFRPLLPQSFLHYMEAQNFLFLWRDKAFPGE 649
             +  ALL C GL K KL+AS R LLP S +H++EA+   FLW+D     E
Sbjct:   602 VAAALLGCGGLRKAKLHASLRSLLPLSLIHHLEARGCAFLWKDNTLQAE 650
GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISS;TAS
GO:0009407 "toxin catabolic process" evidence=RCA
TAIR|locus:2143320 AT5G27920 "AT5G27920" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:505006471 AT4G15475 "AT4G15475" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:1919429 Fbxl2 "F-box and leucine-rich repeat protein 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1562243 Fbxl2 "F-box and leucine-rich repeat protein 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UKC9 FBXL2 "F-box/LRR-repeat protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5R3Z8 FBXL2 "F-box/LRR-repeat protein 2" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
UNIPROTKB|F1PWK1 FBXL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|A6H779 FBXL2 "F-box/LRR-repeat protein 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q58DG6 FBXL20 "F-box/LRR-repeat protein 20" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8RWU5FBL3_ARATHNo assigned EC number0.56240.99530.9729yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_XIX001002
hypothetical protein (649 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query650
cd09293226 cd09293, AMN1, Antagonist of mitotic exit network 9e-19
cd09293226 cd09293, AMN1, Antagonist of mitotic exit network 2e-18
cd09293226 cd09293, AMN1, Antagonist of mitotic exit network 7e-14
cd09293226 cd09293, AMN1, Antagonist of mitotic exit network 2e-13
cd09293226 cd09293, AMN1, Antagonist of mitotic exit network 5e-10
cd09293226 cd09293, AMN1, Antagonist of mitotic exit network 6e-09
cd09293226 cd09293, AMN1, Antagonist of mitotic exit network 6e-07
cd00116319 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo 5e-05
>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1 Back     alignment and domain information 
 Score = 85.5 bits (212), Expect = 9e-19
 Identities = 55/200 (27%), Positives = 94/200 (47%), Gaps = 13/200 (6%)

Query: 331 KELSLSKCSGVTDEELSFVVQS-HKELRKLDITCCRKITYASINSITKTCTSLTSLRMEC 389
               L K   +T   +S +++  H  L  L++  C       ++ ++  C  L  L +  
Sbjct: 4   LLFILHKLGQITQSNISQLLRILHSGLEWLELYMCPISD-PPLDQLSN-CNKLKKLILPG 61

Query: 390 CKLVSWEAFVLIGQQCQYLEELDITENE-VNDEGLKSISR-CSKLSSLKLGI---CSNIT 444
            KL+  E  + + Q C  L+ LD+   E + D G+ +++  C KL ++ LG       IT
Sbjct: 62  SKLIDDEGLIALAQSCPNLQVLDLRACENITDSGIVALATNCPKLQTINLGRHRNGHLIT 121

Query: 445 DEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGC-PSLEMINIAYNERITDTS---L 500
           D  L  +G  C+ L+ +       +TD GV  ++ GC  SLE +++     +TD S   +
Sbjct: 122 DVSLSALGKNCTFLQTVGF-AGCDVTDKGVWELASGCSKSLERLSLNNCRNLTDQSIPAI 180

Query: 501 ISLSECLRLKVLEIRGCPRI 520
           ++ +    L VLE RGCP I
Sbjct: 181 LASNYFPNLSVLEFRGCPLI 200

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226
>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1 Back     alignment and domain information
>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1 Back     alignment and domain information
>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1 Back     alignment and domain information
>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1 Back     alignment and domain information
>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1 Back     alignment and domain information
>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1 Back     alignment and domain information
>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 650
PLN00113 968 leucine-rich repeat receptor-like protein kinase; 100.0
PLN00113 968 leucine-rich repeat receptor-like protein kinase; 100.0
KOG4341483 consensus F-box protein containing LRR [General fu 99.95
KOG4341483 consensus F-box protein containing LRR [General fu 99.92
KOG4194 873 consensus Membrane glycoprotein LIG-1 [Signal tran 99.91
KOG4194 873 consensus Membrane glycoprotein LIG-1 [Signal tran 99.9
KOG2120419 consensus SCF ubiquitin ligase, Skp2 component [Po 99.88
KOG0618 1081 consensus Serine/threonine phosphatase 2C containi 99.83
KOG0472565 consensus Leucine-rich repeat protein [Function un 99.81
KOG0444 1255 consensus Cytoskeletal regulator Flightless-I (con 99.8
KOG0618 1081 consensus Serine/threonine phosphatase 2C containi 99.78
KOG0444 1255 consensus Cytoskeletal regulator Flightless-I (con 99.78
cd00116319 LRR_RI Leucine-rich repeats (LRRs), ribonuclease i 99.75
PLN03210 1153 Resistant to P. syringae 6; Provisional 99.75
cd00116319 LRR_RI Leucine-rich repeats (LRRs), ribonuclease i 99.74
PLN032101153 Resistant to P. syringae 6; Provisional 99.69
KOG0472565 consensus Leucine-rich repeat protein [Function un 99.67
KOG2120419 consensus SCF ubiquitin ligase, Skp2 component [Po 99.55
KOG3207505 consensus Beta-tubulin folding cofactor E [Posttra 99.45
KOG4237498 consensus Extracellular matrix protein slit, conta 99.43
KOG1909382 consensus Ran GTPase-activating protein [RNA proce 99.43
KOG1947482 consensus Leucine rich repeat proteins, some prote 99.37
KOG1947482 consensus Leucine rich repeat proteins, some prote 99.37
KOG1909382 consensus Ran GTPase-activating protein [RNA proce 99.36
KOG3207505 consensus Beta-tubulin folding cofactor E [Posttra 99.27
PRK15387 788 E3 ubiquitin-protein ligase SspH2; Provisional 99.24
KOG4237498 consensus Extracellular matrix protein slit, conta 99.21
PRK15387 788 E3 ubiquitin-protein ligase SspH2; Provisional 99.18
PRK15370754 E3 ubiquitin-protein ligase SlrP; Provisional 98.91
PF14580175 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ 98.81
KOG0617264 consensus Ras suppressor protein (contains leucine 98.81
PF1293747 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 98.77
KOG2982418 consensus Uncharacterized conserved protein [Funct 98.76
PRK15370754 E3 ubiquitin-protein ligase SlrP; Provisional 98.76
KOG2982418 consensus Uncharacterized conserved protein [Funct 98.72
PF14580175 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ 98.7
KOG4658889 consensus Apoptotic ATPase [Signal transduction me 98.7
KOG0617264 consensus Ras suppressor protein (contains leucine 98.67
KOG3665 699 consensus ZYG-1-like serine/threonine protein kina 98.63
COG5238388 RNA1 Ran GTPase-activating protein (RanGAP) involv 98.63
KOG4658889 consensus Apoptotic ATPase [Signal transduction me 98.6
KOG3665 699 consensus ZYG-1-like serine/threonine protein kina 98.55
KOG1259490 consensus Nischarin, modulator of integrin alpha5 98.51
COG5238388 RNA1 Ran GTPase-activating protein (RanGAP) involv 98.5
KOG1259490 consensus Nischarin, modulator of integrin alpha5 98.43
PF0064648 F-box: F-box domain; InterPro: IPR001810 The F-box 98.29
KOG1859 1096 consensus Leucine-rich repeat proteins [General fu 98.21
smart0025641 FBOX A Receptor for Ubiquitination Targets. 98.11
KOG3864221 consensus Uncharacterized conserved protein [Funct 98.07
KOG3864221 consensus Uncharacterized conserved protein [Funct 98.05
KOG1859 1096 consensus Leucine-rich repeat proteins [General fu 97.99
PF1385561 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF 97.8
PF1385561 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF 97.77
COG4886394 Leucine-rich repeat (LRR) protein [Function unknow 97.59
PLN03150623 hypothetical protein; Provisional 97.58
KOG2123 388 consensus Uncharacterized conserved protein [Funct 97.42
COG4886394 Leucine-rich repeat (LRR) protein [Function unknow 97.4
PLN03150623 hypothetical protein; Provisional 97.35
KOG2123 388 consensus Uncharacterized conserved protein [Funct 97.23
KOG4308478 consensus LRR-containing protein [Function unknown 97.17
KOG0532 722 consensus Leucine-rich repeat (LRR) protein, conta 97.1
PRK15386 426 type III secretion protein GogB; Provisional 97.06
KOG4308478 consensus LRR-containing protein [Function unknown 97.04
KOG2739260 consensus Leucine-rich acidic nuclear protein [Cel 97.02
PF1279944 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ 96.95
KOG0531414 consensus Protein phosphatase 1, regulatory subuni 96.89
PF1279944 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ 96.86
KOG2739260 consensus Leucine-rich acidic nuclear protein [Cel 96.85
KOG1644233 consensus U2-associated snRNP A' protein [RNA proc 96.81
KOG1644233 consensus U2-associated snRNP A' protein [RNA proc 96.76
KOG0531414 consensus Protein phosphatase 1, regulatory subuni 96.7
KOG0532 722 consensus Leucine-rich repeat (LRR) protein, conta 96.63
PRK15386 426 type III secretion protein GogB; Provisional 96.53
KOG4579177 consensus Leucine-rich repeat (LRR) protein associ 96.35
KOG4579177 consensus Leucine-rich repeat (LRR) protein associ 95.84
smart0036726 LRR_CC Leucine-rich repeat - CC (cysteine-containi 95.73
smart0036726 LRR_CC Leucine-rich repeat - CC (cysteine-containi 95.57
PLN03215373 ascorbic acid mannose pathway regulator 1; Provisi 94.87
PF1351624 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI 94.27
KOG0281499 consensus Beta-TrCP (transducin repeats containing 94.21
KOG2997366 consensus F-box protein FBX9 [General function pre 92.26
PF1351624 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI 91.88
PF1350417 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO 90.18
smart0036828 LRR_RI Leucine rich repeat, ribonuclease inhibitor 88.7
PF0056022 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le 88.68
PF13306129 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ 88.54
PF13306129 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ 87.8
PF13013109 F-box-like_2: F-box-like domain 87.72
smart0036828 LRR_RI Leucine rich repeat, ribonuclease inhibitor 87.21
KOG3763585 consensus mRNA export factor TAP/MEX67 [RNA proces 80.92
smart0037026 LRR Leucine-rich repeats, outliers. 80.53
smart0036926 LRR_TYP Leucine-rich repeats, typical (most popula 80.53
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=6e-37  Score=344.20  Aligned_cols=520  Identities=18%  Similarity=0.144  Sum_probs=332.1

Q ss_pred             CCceEeccCCCCCCCchhhhhhhcCcccccccceecCCCcccchHhHHHHHhhCCCCceeecCCCCCCChHHHHHHHhcc
Q 006331           71 PFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAK  150 (650)
Q Consensus        71 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~  150 (650)
                      .+++.|+++++. +.....   +.+..++.|+.|++++|....... ..+...+++|++|++++|...+..+.   ..++
T Consensus        69 ~~v~~L~L~~~~-i~~~~~---~~~~~l~~L~~L~Ls~n~~~~~ip-~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~  140 (968)
T PLN00113         69 SRVVSIDLSGKN-ISGKIS---SAIFRLPYIQTINLSNNQLSGPIP-DDIFTTSSSLRYLNLSNNNFTGSIPR---GSIP  140 (968)
T ss_pred             CcEEEEEecCCC-ccccCC---hHHhCCCCCCEEECCCCccCCcCC-hHHhccCCCCCEEECcCCccccccCc---cccC
Confidence            467777777654 221111   134567778888888776432222 22333677888888887764433332   4567


Q ss_pred             CcceeeccCCcCCChHhHHHHHhhCCCCceeecccccccchHHHHHHHhhCCCCceeecCCCCCCcccccccccCCCccE
Q 006331          151 NLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLED  230 (650)
Q Consensus       151 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~  230 (650)
                      +|++|++++|...+. ....+. .+++|++|++++|......+...  .++++|++|++++|.+.+..+..++++++|++
T Consensus       141 ~L~~L~Ls~n~~~~~-~p~~~~-~l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  216 (968)
T PLN00113        141 NLETLDLSNNMLSGE-IPNDIG-SFSSLKVLDLGGNVLVGKIPNSL--TNLTSLEFLTLASNQLVGQIPRELGQMKSLKW  216 (968)
T ss_pred             CCCEEECcCCccccc-CChHHh-cCCCCCEEECccCcccccCChhh--hhCcCCCeeeccCCCCcCcCChHHcCcCCccE
Confidence            888888887763221 122233 37788888888774433433332  36778888888888777777777778888888


Q ss_pred             EecCCCCCCChhHHHHHHhcCcccceeecCCCCCCChHHHHHhhccCcccchhhcccCcCCchhHHHHhhcCCCCcEEEe
Q 006331          231 LVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKF  310 (650)
Q Consensus       231 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l  310 (650)
                      |++++|.... ..+..+.. +++|++|++++|.. . ..++..+..+++|++|++++| .+.+..|..+..+++|++|++
T Consensus       217 L~L~~n~l~~-~~p~~l~~-l~~L~~L~L~~n~l-~-~~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~L  291 (968)
T PLN00113        217 IYLGYNNLSG-EIPYEIGG-LTSLNHLDLVYNNL-T-GPIPSSLGNLKNLQYLFLYQN-KLSGPIPPSIFSLQKLISLDL  291 (968)
T ss_pred             EECcCCccCC-cCChhHhc-CCCCCEEECcCcee-c-cccChhHhCCCCCCEEECcCC-eeeccCchhHhhccCcCEEEC
Confidence            8888765433 22344554 77888888877652 1 223556677788888888777 455566777777788888888


Q ss_pred             cCCcCCHhHHHHHHhhcCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCccHHHHHHHHhcCCCCCEEEcCCC
Q 006331          311 EDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECC  390 (650)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  390 (650)
                      ++|.+.+..+..+. .+++|+.|++++|....  ..+..+..+++|+.|++++|....  ..+.....+++|+.|++++|
T Consensus       292 s~n~l~~~~p~~~~-~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~L~~n~l~~--~~p~~l~~~~~L~~L~Ls~n  366 (968)
T PLN00113        292 SDNSLSGEIPELVI-QLQNLEILHLFSNNFTG--KIPVALTSLPRLQVLQLWSNKFSG--EIPKNLGKHNNLTVLDLSTN  366 (968)
T ss_pred             cCCeeccCCChhHc-CCCCCcEEECCCCccCC--cCChhHhcCCCCCEEECcCCCCcC--cCChHHhCCCCCcEEECCCC
Confidence            88877766665555 67788888887764322  233445677888888887776322  22333456678888888776


Q ss_pred             ccCCHHHHHHHhhcCCCCcEEEecCCccChhhHHhhhcCCCCCeeecCCCCCCChhhHHHHHhcCccCcEEeccCCCCCC
Q 006331          391 KLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSSGIT  470 (650)
Q Consensus       391 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~  470 (650)
                      .. ....+..+. .+++|+.|++++|.+.+..+..+..+++|+.|++++| .++......+ ..+++|+.|++++|. ++
T Consensus       367 ~l-~~~~p~~~~-~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n-~l~~~~p~~~-~~l~~L~~L~Ls~N~-l~  441 (968)
T PLN00113        367 NL-TGEIPEGLC-SSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDN-SFSGELPSEF-TKLPLVYFLDISNNN-LQ  441 (968)
T ss_pred             ee-EeeCChhHh-CcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCC-EeeeECChhH-hcCCCCCEEECcCCc-cc
Confidence            43 222223333 5677888888888777777777777888888888887 6654433333 367888888887764 32


Q ss_pred             HHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHhhcCCCCcEEEecCCCCCChHHHHHHHhcCCCccEEecCCCCCCChhh
Q 006331          471 DVGVVAVSHGCPSLEMINIAYNERITDTSLISLSECLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKCFNINDNG  550 (650)
Q Consensus       471 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~  550 (650)
                      . .+......+++|+.|++++|. +....+..+ ..++|+.|++++| .++.. .+..+..+++|+.|++++| .+....
T Consensus       442 ~-~~~~~~~~l~~L~~L~L~~n~-~~~~~p~~~-~~~~L~~L~ls~n-~l~~~-~~~~~~~l~~L~~L~Ls~N-~l~~~~  515 (968)
T PLN00113        442 G-RINSRKWDMPSLQMLSLARNK-FFGGLPDSF-GSKRLENLDLSRN-QFSGA-VPRKLGSLSELMQLKLSEN-KLSGEI  515 (968)
T ss_pred             C-ccChhhccCCCCcEEECcCce-eeeecCccc-ccccceEEECcCC-ccCCc-cChhhhhhhccCEEECcCC-cceeeC
Confidence            1 122233357888888888874 433222222 3577888888888 55543 3445566788888888888 443222


Q ss_pred             HHHHHHhCCcCCeEEeecCCCCcHHHHHHhcCCCCCceeeecccCCCHHHHHHHHHhCcccceeeec-cccccCCCh
Q 006331          551 MIPLAQYSQNLKQINLSYCSVTDVGLIALASINCLQNMTILHVVGLTPNGLVNALLRCQGLIKVKLN-ASFRPLLPQ  626 (650)
Q Consensus       551 ~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~l~l~-~~~~~~~p~  626 (650)
                      ...+ ..+++|+.|++++|.+++..+..+..+++|+.|++.++.-  ...++..+..+++|+.++++ |.+.+.+|.
T Consensus       516 p~~~-~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l--~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~  589 (968)
T PLN00113        516 PDEL-SSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQL--SGEIPKNLGNVESLVQVNISHNHLHGSLPS  589 (968)
T ss_pred             ChHH-cCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcc--cccCChhHhcCcccCEEeccCCcceeeCCC
Confidence            2222 4467888888888888877777788888888888875432  12334455678888888888 777777774

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional Back     alignment and domain information
>KOG4341 consensus F-box protein containing LRR [General function prediction only] Back     alignment and domain information
>KOG4341 consensus F-box protein containing LRR [General function prediction only] Back     alignment and domain information
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0472 consensus Leucine-rich repeat protein [Function unknown] Back     alignment and domain information
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] Back     alignment and domain information
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] Back     alignment and domain information
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily Back     alignment and domain information
>PLN03210 Resistant to P Back     alignment and domain information
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily Back     alignment and domain information
>PLN03210 Resistant to P Back     alignment and domain information
>KOG0472 consensus Leucine-rich repeat protein [Function unknown] Back     alignment and domain information
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] Back     alignment and domain information
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] Back     alignment and domain information
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] Back     alignment and domain information
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] Back     alignment and domain information
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] Back     alignment and domain information
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional Back     alignment and domain information
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] Back     alignment and domain information
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional Back     alignment and domain information
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional Back     alignment and domain information
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A Back     alignment and domain information
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] Back     alignment and domain information
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B Back     alignment and domain information
>KOG2982 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional Back     alignment and domain information
>KOG2982 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A Back     alignment and domain information
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] Back     alignment and domain information
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] Back     alignment and domain information
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] Back     alignment and domain information
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] Back     alignment and domain information
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] Back     alignment and domain information
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] Back     alignment and domain information
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] Back     alignment and domain information
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] Back     alignment and domain information
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] Back     alignment and domain information
>smart00256 FBOX A Receptor for Ubiquitination Targets Back     alignment and domain information
>KOG3864 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG3864 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] Back     alignment and domain information
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A Back     alignment and domain information
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A Back     alignment and domain information
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown] Back     alignment and domain information
>PLN03150 hypothetical protein; Provisional Back     alignment and domain information
>KOG2123 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown] Back     alignment and domain information
>PLN03150 hypothetical protein; Provisional Back     alignment and domain information
>KOG2123 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4308 consensus LRR-containing protein [Function unknown] Back     alignment and domain information
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] Back     alignment and domain information
>PRK15386 type III secretion protein GogB; Provisional Back     alignment and domain information
>KOG4308 consensus LRR-containing protein [Function unknown] Back     alignment and domain information
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B Back     alignment and domain information
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B Back     alignment and domain information
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] Back     alignment and domain information
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] Back     alignment and domain information
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] Back     alignment and domain information
>PRK15386 type III secretion protein GogB; Provisional Back     alignment and domain information
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] Back     alignment and domain information
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] Back     alignment and domain information
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily Back     alignment and domain information
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily Back     alignment and domain information
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional Back     alignment and domain information
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A Back     alignment and domain information
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] Back     alignment and domain information
>KOG2997 consensus F-box protein FBX9 [General function prediction only] Back     alignment and domain information
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A Back     alignment and domain information
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D Back     alignment and domain information
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type Back     alignment and domain information
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] Back     alignment and domain information
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A Back     alignment and domain information
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A Back     alignment and domain information
>PF13013 F-box-like_2: F-box-like domain Back     alignment and domain information
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type Back     alignment and domain information
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification] Back     alignment and domain information
>smart00370 LRR Leucine-rich repeats, outliers Back     alignment and domain information
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query650
2p1m_B594 Tir1-ask1 Complex Structure Length = 594 2e-13
3ogk_B592 Structure Of Coi1-Ask1 In Complex With Coronatine A 2e-07
1fs2_A272 Insights Into Scf Ubiquitin Ligases From The Struct 6e-06
1fqv_A336 Insights Into Scf Ubiquitin Ligases From The Struct 4e-05
>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure Length = 594 Back     alignment and structure 
Iteration: 1

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 97/403 (24%), Positives = 183/403 (45%), Gaps = 65/403 (16%)
Query: 202 QEIRTLDLSYLPITEKCLPPVVK-LQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLS 260
           +EIR   L  + +T+ CL  + K  +  + LVL  C G   DGLA++  +C++LK L+L 
Sbjct: 108 EEIR---LKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLR 164
Query: 261 KCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGI 320
           +  ++  V          +L      Y+  VS ++S CL +             V+ S +
Sbjct: 165 E-SDVDDV-------SGHWLSHFPDTYTSLVSLNIS-CLAS------------EVSFSAL 203
Query: 321 KAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITC----CRKITYASINSIT 376
           + +     +LK L L++   V  E+L+ ++Q   +L +L         R   Y+ ++   
Sbjct: 204 ERLVTRCPNLKSLKLNR--AVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL 261
Query: 377 KTCTSLTSLRMECCKLVSWEA----FVLIGQQCQYLEELDITENEVNDEGL-KSISRCSK 431
             C  L       C    W+A       +   C  L  L+++   V    L K + +C K
Sbjct: 262 SGCKELR------CLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPK 315
Query: 432 LSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRSS--------GITDVGVVAVSHGCPS 483
           L   +L +   I D GL+ + STC  L+EL ++ S          +T+ G+V+VS GCP 
Sbjct: 316 LQ--RLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPK 373
Query: 484 LEMINIAYNERITDTSLISLSEC------LRLKVLEIRGCPRIS----AIGLSAIAMGCR 533
           LE + + +  ++T+ +LI+++         RL ++E +    ++     IG  AI   C+
Sbjct: 374 LESV-LYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCK 432
Query: 534 QLAMLDIKKCFNINDNGMIPLAQYSQNLKQINLSYCSVTDVGL 576
            L  L +     + D     +  Y++ ++ +++++   +D+G+
Sbjct: 433 DLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGM 473
>pdb|3OGK|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And An Incomplete Jaz1 Degron Length = 592 Back     alignment and structure
>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of The Skp1-Skp2 Complex Length = 272 Back     alignment and structure
>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of The Skp1-Skp2 Complex Length = 336 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query650
3ogk_B592 Coronatine-insensitive protein 1; leucine rich rep 7e-83
3ogk_B 592 Coronatine-insensitive protein 1; leucine rich rep 8e-19
3ogk_B592 Coronatine-insensitive protein 1; leucine rich rep 6e-11
2p1m_B594 Transport inhibitor response 1 protein; F-BOX, leu 1e-78
2p1m_B594 Transport inhibitor response 1 protein; F-BOX, leu 8e-26
2p1m_B 594 Transport inhibitor response 1 protein; F-BOX, leu 7e-13
2p1m_B 594 Transport inhibitor response 1 protein; F-BOX, leu 7e-06
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 4e-37
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 7e-34
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 1e-28
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 2e-22
2ast_B 336 S-phase kinase-associated protein 2; SCF-substrate 2e-06
1z7x_W461 Ribonuclease inhibitor; leucine-rich repeat, enzym 4e-32
1z7x_W461 Ribonuclease inhibitor; leucine-rich repeat, enzym 2e-27
1z7x_W 461 Ribonuclease inhibitor; leucine-rich repeat, enzym 2e-22
1z7x_W461 Ribonuclease inhibitor; leucine-rich repeat, enzym 3e-21
2ca6_A386 RAN GTPase-activating protein 1; GAP, GTPase activ 1e-21
2ca6_A386 RAN GTPase-activating protein 1; GAP, GTPase activ 4e-19
2ca6_A386 RAN GTPase-activating protein 1; GAP, GTPase activ 3e-14
2ca6_A386 RAN GTPase-activating protein 1; GAP, GTPase activ 4e-13
3e4g_A176 ATP synthase subunit S, mitochondrial; leucine-ric 2e-20
3e4g_A176 ATP synthase subunit S, mitochondrial; leucine-ric 6e-13
3e4g_A176 ATP synthase subunit S, mitochondrial; leucine-ric 1e-11
3e4g_A176 ATP synthase subunit S, mitochondrial; leucine-ric 3e-10
3e4g_A176 ATP synthase subunit S, mitochondrial; leucine-ric 4e-10
3e4g_A176 ATP synthase subunit S, mitochondrial; leucine-ric 7e-10
3e4g_A176 ATP synthase subunit S, mitochondrial; leucine-ric 3e-09
3e4g_A176 ATP synthase subunit S, mitochondrial; leucine-ric 9e-09
3e4g_A176 ATP synthase subunit S, mitochondrial; leucine-ric 1e-07
3un9_A372 NLR family member X1; leucine rich repeat (LRR), a 5e-18
3un9_A372 NLR family member X1; leucine rich repeat (LRR), a 5e-15
3un9_A372 NLR family member X1; leucine rich repeat (LRR), a 9e-15
3un9_A372 NLR family member X1; leucine rich repeat (LRR), a 9e-12
3un9_A372 NLR family member X1; leucine rich repeat (LRR), a 4e-07
3goz_A362 Leucine-rich repeat-containing protein; LEGL7, NES 3e-17
3goz_A362 Leucine-rich repeat-containing protein; LEGL7, NES 1e-16
3goz_A362 Leucine-rich repeat-containing protein; LEGL7, NES 3e-16
1o6v_A466 Internalin A; bacterial infection, extracellular r 2e-14
1o6v_A466 Internalin A; bacterial infection, extracellular r 2e-14
1o6v_A466 Internalin A; bacterial infection, extracellular r 7e-14
1o6v_A466 Internalin A; bacterial infection, extracellular r 4e-09
1o6v_A 466 Internalin A; bacterial infection, extracellular r 7e-08
4fmz_A347 Internalin; leucine rich repeat, structural genomi 9e-14
4fmz_A347 Internalin; leucine rich repeat, structural genomi 5e-13
4fmz_A347 Internalin; leucine rich repeat, structural genomi 1e-10
4fmz_A347 Internalin; leucine rich repeat, structural genomi 2e-08
3j0a_A 844 TOLL-like receptor 5; membrane protein, leucine-ri 3e-12
3j0a_A 844 TOLL-like receptor 5; membrane protein, leucine-ri 2e-07
3j0a_A 844 TOLL-like receptor 5; membrane protein, leucine-ri 2e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
3t6q_A606 CD180 antigen; protein-protein complex, leucine ri 5e-11
3t6q_A606 CD180 antigen; protein-protein complex, leucine ri 2e-04
1ziw_A680 TOLL-like receptor 3; innate immunity, immune syst 8e-11
1ziw_A680 TOLL-like receptor 3; innate immunity, immune syst 1e-07
3fxi_A605 TLR4, htoll, TOLL-like receptor 4; leucine rich re 2e-10
4ezg_A197 Putative uncharacterized protein; internalin-A, le 2e-09
4ezg_A197 Putative uncharacterized protein; internalin-A, le 2e-07
4ezg_A197 Putative uncharacterized protein; internalin-A, le 5e-06
2ra8_A362 Uncharacterized protein Q64V53_bacfr; WGR domain, 2e-09
2ra8_A362 Uncharacterized protein Q64V53_bacfr; WGR domain, 7e-09
2ra8_A362 Uncharacterized protein Q64V53_bacfr; WGR domain, 1e-04
3vq2_A606 TLR4, TOLL-like receptor 4; leucine rich repeat MD 8e-09
3vq2_A606 TLR4, TOLL-like receptor 4; leucine rich repeat MD 2e-05
1io0_A185 Tropomodulin; LRR protein, right-handed super-heli 8e-09
1io0_A185 Tropomodulin; LRR protein, right-handed super-heli 7e-06
1io0_A185 Tropomodulin; LRR protein, right-handed super-heli 6e-05
1h6t_A291 Internalin B; cell adhesion, leucine rich repeat, 3e-08
1h6t_A291 Internalin B; cell adhesion, leucine rich repeat, 4e-07
3bz5_A457 Internalin-J, INLJ; leucine rich repeat (LRR), cys 5e-08
3bz5_A457 Internalin-J, INLJ; leucine rich repeat (LRR), cys 1e-07
1m9s_A 605 Internalin B; cell invasion, GW domains, SH3 domai 7e-08
1m9s_A 605 Internalin B; cell invasion, GW domains, SH3 domai 1e-06
1m9s_A605 Internalin B; cell invasion, GW domains, SH3 domai 1e-05
1h6u_A308 Internalin H; cell adhesion, leucine rich repeat, 9e-08
1h6u_A308 Internalin H; cell adhesion, leucine rich repeat, 7e-07
1h6u_A308 Internalin H; cell adhesion, leucine rich repeat, 4e-04
2z63_A570 TOLL-like receptor 4, variable lymphocyte recepto; 3e-07
2z63_A 570 TOLL-like receptor 4, variable lymphocyte recepto; 2e-04
1xeu_A263 Internalin C; cellular invasion, leucine-rich repe 1e-06
4eco_A636 Uncharacterized protein; leucine-rich repeats, pro 9e-06
4eco_A636 Uncharacterized protein; leucine-rich repeats, pro 1e-05
4ecn_A876 Leucine-rich repeat protein; leucine-rich repeats, 3e-05
4fcg_A328 Uncharacterized protein; structural genomics, PSI- 3e-05
4fcg_A328 Uncharacterized protein; structural genomics, PSI- 1e-04
1jl5_A454 Outer protein YOPM; leucine-rich repeat, molecular 5e-05
1jl5_A454 Outer protein YOPM; leucine-rich repeat, molecular 2e-04
1pgv_A197 TMD-1, tropomodulin TMD-1; structural genomics, PS 1e-04
1dce_A567 Protein (RAB geranylgeranyltransferase alpha subun 3e-04
3rgz_A 768 Protein brassinosteroid insensitive 1; phytohormon 8e-04
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 Back     alignment and structure
 Score =  271 bits (695), Expect = 7e-83
 Identities = 113/605 (18%), Positives = 215/605 (35%), Gaps = 77/605 (12%)

Query: 6   KKNSNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRK--ILKPLCAETL 63
           K+         +++I  ++ ++  DP  R S SL CR ++ I+S  R+   +      T 
Sbjct: 7   KRCKLSCVATVDDVIEQVMTYIT-DPKDRDSASLVCRRWFKIDSETREHVTMALCYTATP 65

Query: 64  SRTSARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVN 123
            R S R+P +  L L   PRA    L                      +    ++ ++ N
Sbjct: 66  DRLSRRFPNLRSLKLKGKPRAAMFNL---------------IPENWGGYVTPWVTEISNN 110

Query: 124 CRFLTEIDLSNGTEMGDAAAAAIAEA--KNLERLWLARCKLITDLGIGRIAACCRKLKLL 181
            R L  +       + D     +A+A   +LE L L +C   T  G+  I   CRK+K L
Sbjct: 111 LRQLKSVHFR-RMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTL 169

Query: 182 CLKWCIRVTDLGVELVAL--KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGI 239
            ++        G  L  L      +  L+                              I
Sbjct: 170 LMEESSFSEKDGKWLHELAQHNTSLEVLNFYMT----------------------EFAKI 207

Query: 240 DDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCL 299
               L ++  +C+SL ++ +   + +  VG        +      L     +       +
Sbjct: 208 SPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV 267

Query: 300 HNFPMLQSIKFEDC-PVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRK 358
                 + +       +  + +  +  +   +++L L      T+ +   ++Q    L  
Sbjct: 268 F----PRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETE-DHCTLIQKCPNLEV 322

Query: 359 LDITCCRKITYASINSITKTCTSLTSLRMECCK----------LVSWEAFVLIGQQCQYL 408
           L+      I    +  + + C  L  LR+E             LVS    + + Q CQ L
Sbjct: 323 LETRNV--IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQEL 380

Query: 409 EELDITENEVNDEGLKSISR-CSKLSSLKLGICSNI-------TDEGLKHVGSTCSMLKE 460
           E + +  +++ +E L+SI      L   +L +            D G++ +   C  L+ 
Sbjct: 381 EYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRR 440

Query: 461 LDLY-RSSGITDVGVVAVSHGCPSLEMINIAYNERITDTSLISLSE-CLRLKVLEIRGCP 518
              Y R  G+TD+G+  +    P++  + + Y    +D  L+  S  C  L+ LE+RGC 
Sbjct: 441 FAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEMRGCC 499

Query: 519 RISAIGLSAIAMGCRQLAMLDIKKCF-NINDNGMIPLAQYSQNLKQINLSYCS-VTDVGL 576
             S   ++A       L  L ++    ++    ++ +A+   N++ I       V   G 
Sbjct: 500 -FSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQGE 558

Query: 577 IALAS 581
           I    
Sbjct: 559 IREME 563
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 Back     alignment and structure
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 Back     alignment and structure
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 Back     alignment and structure
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 Back     alignment and structure
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 Back     alignment and structure
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 Back     alignment and structure
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 Back     alignment and structure
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 Back     alignment and structure
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 Back     alignment and structure
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 Back     alignment and structure
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 Back     alignment and structure
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 Back     alignment and structure
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 Back     alignment and structure
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 Back     alignment and structure
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 Back     alignment and structure
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 Back     alignment and structure
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 Back     alignment and structure
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 Back     alignment and structure
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 Back     alignment and structure
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 Back     alignment and structure
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 Back     alignment and structure
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 Back     alignment and structure
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 Back     alignment and structure
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 Back     alignment and structure
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 Back     alignment and structure
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 Back     alignment and structure
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 Back     alignment and structure
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 Back     alignment and structure
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 Back     alignment and structure
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 Back     alignment and structure
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 Back     alignment and structure
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 Back     alignment and structure
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 Back     alignment and structure
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 Back     alignment and structure
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 Back     alignment and structure
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 Back     alignment and structure
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 Back     alignment and structure
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 Back     alignment and structure
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 Back     alignment and structure
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 Back     alignment and structure
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 Back     alignment and structure
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 Back     alignment and structure
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 Back     alignment and structure
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 Back     alignment and structure
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 Back     alignment and structure
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 Back     alignment and structure
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 Back     alignment and structure
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 Back     alignment and structure
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 Back     alignment and structure
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 Back     alignment and structure
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185 Back     alignment and structure
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185 Back     alignment and structure
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185 Back     alignment and structure
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 Back     alignment and structure
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 Back     alignment and structure
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 Back     alignment and structure
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 Back     alignment and structure
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 Back     alignment and structure
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 Back     alignment and structure
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 Back     alignment and structure
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 Back     alignment and structure
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 Back     alignment and structure
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 Back     alignment and structure
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 Back     alignment and structure
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 Back     alignment and structure
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 Back     alignment and structure
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 Back     alignment and structure
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 Back     alignment and structure
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 Back     alignment and structure
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 Back     alignment and structure
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 Back     alignment and structure
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 Back     alignment and structure
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 Back     alignment and structure
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197 Back     alignment and structure
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 Back     alignment and structure
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query650
2p1m_B594 Transport inhibitor response 1 protein; F-BOX, leu 100.0
3ogk_B592 Coronatine-insensitive protein 1; leucine rich rep 100.0
3rgz_A768 Protein brassinosteroid insensitive 1; phytohormon 100.0
3rgz_A768 Protein brassinosteroid insensitive 1; phytohormon 100.0
2p1m_B594 Transport inhibitor response 1 protein; F-BOX, leu 100.0
1ziw_A680 TOLL-like receptor 3; innate immunity, immune syst 100.0
3t6q_A606 CD180 antigen; protein-protein complex, leucine ri 100.0
3t6q_A606 CD180 antigen; protein-protein complex, leucine ri 100.0
1ziw_A680 TOLL-like receptor 3; innate immunity, immune syst 100.0
3ogk_B592 Coronatine-insensitive protein 1; leucine rich rep 100.0
3vq2_A606 TLR4, TOLL-like receptor 4; leucine rich repeat MD 100.0
3vq2_A606 TLR4, TOLL-like receptor 4; leucine rich repeat MD 100.0
1z7x_W461 Ribonuclease inhibitor; leucine-rich repeat, enzym 99.98
1z7x_W461 Ribonuclease inhibitor; leucine-rich repeat, enzym 99.97
2z81_A549 CD282 antigen, TOLL-like receptor 2, variable lymp 99.97
2z81_A549 CD282 antigen, TOLL-like receptor 2, variable lymp 99.97
2z63_A570 TOLL-like receptor 4, variable lymphocyte recepto; 99.97
3j0a_A 844 TOLL-like receptor 5; membrane protein, leucine-ri 99.96
2z63_A570 TOLL-like receptor 4, variable lymphocyte recepto; 99.96
3j0a_A 844 TOLL-like receptor 5; membrane protein, leucine-ri 99.96
2z7x_B520 TOLL-like receptor 1, variable lymphocyte recepto; 99.96
2z7x_B520 TOLL-like receptor 1, variable lymphocyte recepto; 99.96
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 99.95
4eco_A636 Uncharacterized protein; leucine-rich repeats, pro 99.95
4eco_A636 Uncharacterized protein; leucine-rich repeats, pro 99.94
4ecn_A876 Leucine-rich repeat protein; leucine-rich repeats, 99.94
4ecn_A876 Leucine-rich repeat protein; leucine-rich repeats, 99.94
1o6v_A466 Internalin A; bacterial infection, extracellular r 99.93
3a79_B562 TLR6, VLRB.59, TOLL-like receptor 6, variable lymp 99.93
1o6v_A466 Internalin A; bacterial infection, extracellular r 99.93
3a79_B562 TLR6, VLRB.59, TOLL-like receptor 6, variable lymp 99.92
3v47_A455 TOLL-like receptor 5B and variable lymphocyte REC 99.92
4fmz_A347 Internalin; leucine rich repeat, structural genomi 99.92
3v47_A455 TOLL-like receptor 5B and variable lymphocyte REC 99.92
4fmz_A347 Internalin; leucine rich repeat, structural genomi 99.92
4g8a_A635 TOLL-like receptor 4; leucine rich repeat MD-2 rel 99.91
4g8a_A635 TOLL-like receptor 4; leucine rich repeat MD-2 rel 99.91
3bz5_A457 Internalin-J, INLJ; leucine rich repeat (LRR), cys 99.9
3bz5_A457 Internalin-J, INLJ; leucine rich repeat (LRR), cys 99.9
3o6n_A390 APL1; leucine-rich repeat, protein binding; HET: N 99.88
1jl5_A454 Outer protein YOPM; leucine-rich repeat, molecular 99.88
1jl5_A454 Outer protein YOPM; leucine-rich repeat, molecular 99.88
3o6n_A390 APL1; leucine-rich repeat, protein binding; HET: N 99.87
3oja_B 597 Anopheles plasmodium-responsive leucine-rich REPE 99.87
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 99.86
2id5_A477 Lingo-1, leucine rich repeat neuronal 6A; CNS-spec 99.86
2id5_A477 Lingo-1, leucine rich repeat neuronal 6A; CNS-spec 99.85
3oja_B 597 Anopheles plasmodium-responsive leucine-rich REPE 99.85
2ca6_A386 RAN GTPase-activating protein 1; GAP, GTPase activ 99.83
2ca6_A386 RAN GTPase-activating protein 1; GAP, GTPase activ 99.83
1xku_A330 Decorin; proteoglycan, leucine-rich repeat, struct 99.77
1xku_A330 Decorin; proteoglycan, leucine-rich repeat, struct 99.77
3goz_A362 Leucine-rich repeat-containing protein; LEGL7, NES 99.76
3goz_A362 Leucine-rich repeat-containing protein; LEGL7, NES 99.76
2ft3_A332 Biglycan; proteoglycan, dimer interface, structura 99.75
2ft3_A332 Biglycan; proteoglycan, dimer interface, structura 99.74
3o53_A317 Protein LRIM1, AGAP006348-PA; leucine-rich repeat, 99.74
1ogq_A313 PGIP-2, polygalacturonase inhibiting protein; inhi 99.73
2z80_A353 TOLL-like receptor 2, variable lymphocyte recepto; 99.7
2z80_A353 TOLL-like receptor 2, variable lymphocyte recepto; 99.7
3o53_A317 Protein LRIM1, AGAP006348-PA; leucine-rich repeat, 99.68
1ogq_A313 PGIP-2, polygalacturonase inhibiting protein; inhi 99.68
2z66_A306 Variable lymphocyte receptor B, TOLL-like recepto; 99.66
3zyi_A452 Leucine-rich repeat-containing protein 4; cell adh 99.66
3zyj_A440 Leucine-rich repeat-containing protein 4C; cell ad 99.66
1wwl_A312 Monocyte differentiation antigen CD14; LPS, immune 99.65
1wwl_A312 Monocyte differentiation antigen CD14; LPS, immune 99.65
2z66_A306 Variable lymphocyte receptor B, TOLL-like recepto; 99.65
1ozn_A285 Reticulon 4 receptor; NOGO receptor, MAD, myelinat 99.64
3g06_A 622 SSPH2 (leucine-rich repeat protein); E3 ubiquitin 99.64
4fcg_A328 Uncharacterized protein; structural genomics, PSI- 99.64
4fcg_A328 Uncharacterized protein; structural genomics, PSI- 99.64
3g06_A 622 SSPH2 (leucine-rich repeat protein); E3 ubiquitin 99.63
3oja_A 487 Leucine-rich immune molecule 1; coiled-coil, helix 99.63
1ozn_A285 Reticulon 4 receptor; NOGO receptor, MAD, myelinat 99.63
3zyi_A452 Leucine-rich repeat-containing protein 4; cell adh 99.59
3zyj_A440 Leucine-rich repeat-containing protein 4C; cell ad 99.59
1h6u_A308 Internalin H; cell adhesion, leucine rich repeat, 99.59
4glp_A310 Monocyte differentiation antigen CD14; alpha beta 99.58
3oja_A487 Leucine-rich immune molecule 1; coiled-coil, helix 99.58
1h6u_A308 Internalin H; cell adhesion, leucine rich repeat, 99.58
3un9_A372 NLR family member X1; leucine rich repeat (LRR), a 99.57
3rfs_A272 Internalin B, repeat modules, variable lymphocyte 99.55
2z62_A276 TOLL-like receptor 4, variable lymphocyte recepto; 99.52
4glp_A310 Monocyte differentiation antigen CD14; alpha beta 99.51
3rfs_A272 Internalin B, repeat modules, variable lymphocyte 99.49
2o6q_A270 Variable lymphocyte receptor A; leucine-rich repea 99.47
2z62_A276 TOLL-like receptor 4, variable lymphocyte recepto; 99.46
3un9_A372 NLR family member X1; leucine rich repeat (LRR), a 99.45
1h6t_A291 Internalin B; cell adhesion, leucine rich repeat, 99.44
4ezg_A197 Putative uncharacterized protein; internalin-A, le 99.43
1h6t_A291 Internalin B; cell adhesion, leucine rich repeat, 99.43
1p9a_G290 Platelet glycoprotein IB alpha chain precursor; pl 99.41
2o6q_A270 Variable lymphocyte receptor A; leucine-rich repea 99.4
2xwt_C239 Thyrotropin receptor; signaling protein-immune sys 99.4
2xwt_C239 Thyrotropin receptor; signaling protein-immune sys 99.38
1p9a_G290 Platelet glycoprotein IB alpha chain precursor; pl 99.35
3e4g_A176 ATP synthase subunit S, mitochondrial; leucine-ric 99.34
1m9s_A 605 Internalin B; cell invasion, GW domains, SH3 domai 99.34
4ezg_A197 Putative uncharacterized protein; internalin-A, le 99.33
1m9s_A 605 Internalin B; cell invasion, GW domains, SH3 domai 99.33
3m19_A251 Variable lymphocyte receptor A diversity region; a 99.29
3e4g_A176 ATP synthase subunit S, mitochondrial; leucine-ric 99.28
3m19_A251 Variable lymphocyte receptor A diversity region; a 99.28
2je0_A149 Acidic leucine-rich nuclear phosphoprotein 32 FAM 99.23
1xeu_A263 Internalin C; cellular invasion, leucine-rich repe 99.21
1xeu_A263 Internalin C; cellular invasion, leucine-rich repe 99.2
2o6s_A208 Variable lymphocyte receptor B; leucine-rich repea 99.18
2ell_A168 Acidic leucine-rich nuclear phosphoprotein 32 FAM 99.13
2je0_A149 Acidic leucine-rich nuclear phosphoprotein 32 FAM 99.13
4ay9_X350 Follicle-stimulating hormone receptor; hormone-rec 99.12
3sb4_A329 Hypothetical leucine rich repeat protein; LRR, rig 99.12
2o6s_A208 Variable lymphocyte receptor B; leucine-rich repea 99.11
3sb4_A329 Hypothetical leucine rich repeat protein; LRR, rig 99.1
1dce_A567 Protein (RAB geranylgeranyltransferase alpha subun 99.09
2ell_A168 Acidic leucine-rich nuclear phosphoprotein 32 FAM 99.08
3cvr_A 571 Invasion plasmid antigen; leucine rich repeat and 99.08
2ra8_A362 Uncharacterized protein Q64V53_bacfr; WGR domain, 99.07
1dce_A567 Protein (RAB geranylgeranyltransferase alpha subun 99.06
3cvr_A 571 Invasion plasmid antigen; leucine rich repeat and 99.04
4ay9_X350 Follicle-stimulating hormone receptor; hormone-rec 99.03
2xot_A361 Amphoterin-induced protein 1; cell adhesion, neuro 99.03
2xot_A361 Amphoterin-induced protein 1; cell adhesion, neuro 99.02
2v9t_B220 SLIT homolog 2 protein N-product; structural prote 99.01
1io0_A185 Tropomodulin; LRR protein, right-handed super-heli 99.0
2v9t_B220 SLIT homolog 2 protein N-product; structural prote 99.0
2v70_A220 SLIT-2, SLIT homolog 2 protein N-product; neurogen 98.99
2ra8_A362 Uncharacterized protein Q64V53_bacfr; WGR domain, 98.97
2v70_A220 SLIT-2, SLIT homolog 2 protein N-product; neurogen 98.97
1a9n_A176 U2A', U2A'; complex (nuclear protein/RNA), RNA, sn 98.95
3e6j_A229 Variable lymphocyte receptor diversity region; var 98.91
1a9n_A176 U2A', U2A'; complex (nuclear protein/RNA), RNA, sn 98.9
1io0_A185 Tropomodulin; LRR protein, right-handed super-heli 98.85
3e6j_A229 Variable lymphocyte receptor diversity region; var 98.84
1ds9_A198 Outer arm dynein; leucine-rich repeat, beta-BETA-a 98.84
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 98.79
1ds9_A198 Outer arm dynein; leucine-rich repeat, beta-BETA-a 98.7
4fs7_A394 Uncharacterized protein; leucine-rich repeats, pro 98.62
1w8a_A192 SLIT protein; signaling protein, secreted protein, 98.61
1w8a_A192 SLIT protein; signaling protein, secreted protein, 98.56
4b8c_D 727 Glucose-repressible alcohol dehydrogenase transcr 98.54
2wfh_A193 SLIT homolog 2 protein C-product; developmental pr 98.53
2wfh_A193 SLIT homolog 2 protein C-product; developmental pr 98.5
2o6r_A177 Variable lymphocyte receptor B; leucine-rich repea 98.5
4b8c_D 727 Glucose-repressible alcohol dehydrogenase transcr 98.49
4fs7_A394 Uncharacterized protein; leucine-rich repeats, pro 98.48
2o6r_A177 Variable lymphocyte receptor B; leucine-rich repea 98.46
1pgv_A197 TMD-1, tropomodulin TMD-1; structural genomics, PS 98.43
4fdw_A401 Leucine rich hypothetical protein; putative cell s 98.42
4fdw_A401 Leucine rich hypothetical protein; putative cell s 98.37
1pgv_A197 TMD-1, tropomodulin TMD-1; structural genomics, PS 98.26
3g39_A170 Variable lymphocyte receptor VLRB.2D; antibody, X- 98.05
3g39_A170 Variable lymphocyte receptor VLRB.2D; antibody, X- 98.03
4gt6_A394 Cell surface protein; leucine rich repeats, putati 98.03
2r9u_A174 Variable lymphocyte receptor; adaptive immunity, V 97.99
2r9u_A174 Variable lymphocyte receptor; adaptive immunity, V 97.96
4gt6_A394 Cell surface protein; leucine rich repeats, putati 97.89
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 97.61
2ifg_A347 High affinity nerve growth factor receptor; TRK, T 97.53
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 97.43
2ifg_A347 High affinity nerve growth factor receptor; TRK, T 97.42
3rw6_A267 Nuclear RNA export factor 1; retroviral constituti 97.4
3rw6_A267 Nuclear RNA export factor 1; retroviral constituti 97.28
4h09_A379 Hypothetical leucine rich repeat protein; two LRR_ 97.01
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 96.93
4h09_A379 Hypothetical leucine rich repeat protein; two LRR_ 96.72
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 96.7
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 96.61
3rfe_A130 Platelet glycoprotein IB beta chain; platelet surf 85.8
3rfe_A130 Platelet glycoprotein IB beta chain; platelet surf 82.22
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Back     alignment and structure
Probab=100.00  E-value=1.6e-42  Score=370.14  Aligned_cols=506  Identities=21%  Similarity=0.291  Sum_probs=289.4

Q ss_pred             CCCCCCcHHHHHHHHhhccCCcccccchhhhhhhHHHHHHhhcccccccch--hhHHHHHhcCCCceEeccCCCCCCCch
Q 006331           10 NPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKILKPLCA--ETLSRTSARYPFITQLDLSLCPRANDD   87 (650)
Q Consensus        10 ~~~~~LP~eil~~If~~~L~~~~~~~~~~~vc~~w~~~~~~~~~~~~~~~~--~~l~~~~~~~~~L~~L~l~~~~~~~~~   87 (650)
                      +.|+.||+||+.+||+ ||++.+|+.++++|||+|+++....+..+.+..+  ......+.+|++|+.|+++++..+.+.
T Consensus         4 d~~~~LPdevL~~If~-~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~   82 (594)
T 2p1m_B            4 RIALSFPEEVLEHVFS-FIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADF   82 (594)
T ss_dssp             ------CHHHHHHHHH-TCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGGG
T ss_pred             cchhhCCHHHHHHHHh-hcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccCHHHHHhhCCCceEEeccCCCchhhc
Confidence            7899999999999999 9987899999999999999996666665555544  224567788888999988887644322


Q ss_pred             hhhhhhcCcccccccceecCCCcccchHhHHHHHhhCCCCceeecCCCCCCChHHHHHHHhccCcceeeccCCcCCChHh
Q 006331           88 ALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLG  167 (650)
Q Consensus        88 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  167 (650)
                      ..  . ...         ..   ......+..+...+++|++|++++|.                          +++..
T Consensus        83 ~l--~-~~~---------~~---~~~~~~l~~l~~~~~~L~~L~L~~~~--------------------------~~~~~  121 (594)
T 2p1m_B           83 NL--V-PDG---------WG---GYVYPWIEAMSSSYTWLEEIRLKRMV--------------------------VTDDC  121 (594)
T ss_dssp             TC--S-CTT---------SC---CBCHHHHHHHHHHCTTCCEEEEESCB--------------------------CCHHH
T ss_pred             cc--c-ccc---------cc---chhhHHHHHHHHhCCCCCeEEeeCcE--------------------------EcHHH
Confidence            11  0 000         00   11223344444456666666666554                          33333


Q ss_pred             HHHHHhhCCCCceeecccccccchHHHHHHHhhCCCCceeecCCCCCCcccccccc----cCCCccEEecCCCC-CCChh
Q 006331          168 IGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVV----KLQYLEDLVLEGCH-GIDDD  242 (650)
Q Consensus       168 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~----~l~~L~~L~l~~~~-~~~~~  242 (650)
                      +..+...+++|++|++++|..++..+...+...+++|++|++++|.+++..+..+.    .+++|++|++++|. .+...
T Consensus       122 ~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~  201 (594)
T 2p1m_B          122 LELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFS  201 (594)
T ss_dssp             HHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHH
T ss_pred             HHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHH
Confidence            44444345566666666554444444444444566666666666655544433333    46688888888775 45555


Q ss_pred             HHHHHHhcCcccceeecCCCCCCChHHHHHhhccCcccchhhcccCcC-C----chhHHHHhhcCCCCcEE-EecCCcCC
Q 006331          243 GLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFW-V----SADLSKCLHNFPMLQSI-KFEDCPVA  316 (650)
Q Consensus       243 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~----~~~~~~~l~~l~~L~~L-~l~~~~~~  316 (650)
                      .+..+...+++|++|++++|..  ...++..+..+++|++|.+.++.. +    ....+..+..+++|+.| .+.+.  .
T Consensus       202 ~l~~l~~~~~~L~~L~L~~~~~--~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~--~  277 (594)
T 2p1m_B          202 ALERLVTRCPNLKSLKLNRAVP--LEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDA--V  277 (594)
T ss_dssp             HHHHHHHHCTTCCEEECCTTSC--HHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTC--C
T ss_pred             HHHHHHHhCCCCcEEecCCCCc--HHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCccc--c
Confidence            5666655588888888888742  333666677777777777665421 1    01233345555666655 22221  1


Q ss_pred             HhHHHHHHhhcCCCcEEecCCCCCCChHHHHHHHhcCCCCcEEEccCCCCccHHHHHHHHhcCCCCCEEEcCCCccCCHH
Q 006331          317 RSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWE  396 (650)
Q Consensus       317 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  396 (650)
                      ...+..+...+++|++|++++|. +.+..+...+..+++|++|++.+|  +.+..+..+...+++|+.|++.+|....  
T Consensus       278 ~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~g--  352 (594)
T 2p1m_B          278 PAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLASTCKDLRELRVFPSEPFV--  352 (594)
T ss_dssp             GGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECSCTTC--
T ss_pred             hhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHHHhCCCCCEEEEecCcccc--
Confidence            11122222244555555555554 444444444445555555555544  2333344444444455555442110000  


Q ss_pred             HHHHHhhcCCCCcEEEecCCccChhhHHhhhc-CCCCCeeecCCCCCCChhhHHHHHhcCccCcEEecc-----CCCCCC
Q 006331          397 AFVLIGQQCQYLEELDITENEVNDEGLKSISR-CSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLY-----RSSGIT  470 (650)
Q Consensus       397 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~i~~~~~~~l~~~~~~L~~L~l~-----~~~~~~  470 (650)
                                     ....+.+++.+...+.. +++|+.|.+..+ .+++.++..+...+++|+.|+++     +|..++
T Consensus       353 ---------------~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~-~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~  416 (594)
T 2p1m_B          353 ---------------MEPNVALTEQGLVSVSMGCPKLESVLYFCR-QMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT  416 (594)
T ss_dssp             ---------------SSCSSCCCHHHHHHHHHHCTTCCEEEEEES-CCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT
T ss_pred             ---------------cccCCCCCHHHHHHHHHhchhHHHHHHhcC-CcCHHHHHHHHhhCCCcceeEeecccCCCccccc
Confidence                           00113444444444432 555665544434 55555555555556666666666     455565


Q ss_pred             ----HHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHhhc-CCCCcEEEecCCCCCChHHHHHHHhcCCCccEEecCCCCC
Q 006331          471 ----DVGVVAVSHGCPSLEMINIAYNERITDTSLISLSE-CLRLKVLEIRGCPRISAIGLSAIAMGCRQLAMLDIKKCFN  545 (650)
Q Consensus       471 ----~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~-~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~  545 (650)
                          +.++..+...+++|++|++++  .+++.....+.. +++|+.|++++| .+++.++..+...+++|++|++++| .
T Consensus       417 ~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~L~~L~L~~n-~  492 (594)
T 2p1m_B          417 LEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFA-GDSDLGMHHVLSGCDSLRKLEIRDC-P  492 (594)
T ss_dssp             CCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESC-CSSHHHHHHHHHHCTTCCEEEEESC-S
T ss_pred             CCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCC-CCcHHHHHHHHhcCCCcCEEECcCC-C
Confidence                566666666677777777755  466666666665 777777777777 5666666666666777777777777 4


Q ss_pred             CChhhHHHHHHhCCcCCeEEeecCCCCcHHHHHH-hcCCCCC
Q 006331          546 INDNGMIPLAQYSQNLKQINLSYCSVTDVGLIAL-ASINCLQ  586 (650)
Q Consensus       546 l~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~-~~l~~L~  586 (650)
                      +++.+...+...+++|+.|++++|+++..+...+ ..+|.++
T Consensus       493 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~  534 (594)
T 2p1m_B          493 FGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLN  534 (594)
T ss_dssp             CCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEE
T ss_pred             CcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCE
Confidence            4666665555556777777777777766666655 3455553
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Back     alignment and structure
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Back     alignment and structure
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Back     alignment and structure
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Back     alignment and structure
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Back     alignment and structure
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Back     alignment and structure
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Back     alignment and structure
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Back     alignment and structure
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Back     alignment and structure
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Back     alignment and structure
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Back     alignment and structure
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Back     alignment and structure
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Back     alignment and structure
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Back     alignment and structure
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Back     alignment and structure
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Back     alignment and structure
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Back     alignment and structure
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Back     alignment and structure
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Back     alignment and structure
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Back     alignment and structure
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Back     alignment and structure
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Back     alignment and structure
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Back     alignment and structure
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Back     alignment and structure
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Back     alignment and structure
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Back     alignment and structure
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Back     alignment and structure
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Back     alignment and structure
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Back     alignment and structure
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Back     alignment and structure
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Back     alignment and structure
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* Back     alignment and structure
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* Back     alignment and structure
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Back     alignment and structure
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Back     alignment and structure
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Back     alignment and structure
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Back     alignment and structure
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Back     alignment and structure
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Back     alignment and structure
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Back     alignment and structure
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Back     alignment and structure
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Back     alignment and structure
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Back     alignment and structure
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Back     alignment and structure
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Back     alignment and structure
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Back     alignment and structure
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Back     alignment and structure
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Back     alignment and structure
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Back     alignment and structure
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Back     alignment and structure
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Back     alignment and structure
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Back     alignment and structure
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Back     alignment and structure
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Back     alignment and structure
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Back     alignment and structure
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Back     alignment and structure
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Back     alignment and structure
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Back     alignment and structure
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Back     alignment and structure
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Back     alignment and structure
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Back     alignment and structure
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Back     alignment and structure
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Back     alignment and structure
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Back     alignment and structure
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Back     alignment and structure
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Back     alignment and structure
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Back     alignment and structure
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Back     alignment and structure
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Back     alignment and structure
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} Back     alignment and structure
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Back     alignment and structure
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Back     alignment and structure
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Back     alignment and structure
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Back     alignment and structure
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} Back     alignment and structure
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Back     alignment and structure
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Back     alignment and structure
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Back     alignment and structure
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Back     alignment and structure
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Back     alignment and structure
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Back     alignment and structure
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Back     alignment and structure
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Back     alignment and structure
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Back     alignment and structure
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Back     alignment and structure
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Back     alignment and structure
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Back     alignment and structure
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Back     alignment and structure
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Back     alignment and structure
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Back     alignment and structure
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Back     alignment and structure
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Back     alignment and structure
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Back     alignment and structure
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Back     alignment and structure
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Back     alignment and structure
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Back     alignment and structure
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Back     alignment and structure
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Back     alignment and structure
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Back     alignment and structure
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Back     alignment and structure
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Back     alignment and structure
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Back     alignment and structure
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Back     alignment and structure
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Back     alignment and structure
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Back     alignment and structure
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Back     alignment and structure
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Back     alignment and structure
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Back     alignment and structure
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Back     alignment and structure
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Back     alignment and structure
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Back     alignment and structure
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Back     alignment and structure
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Back     alignment and structure
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Back     alignment and structure
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Back     alignment and structure
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Back     alignment and structure
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Back     alignment and structure
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Back     alignment and structure
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Back     alignment and structure
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Back     alignment and structure
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Back     alignment and structure
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Back     alignment and structure
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Back     alignment and structure
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Back     alignment and structure
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Back     alignment and structure
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Back     alignment and structure
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Back     alignment and structure
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} Back     alignment and structure
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Back     alignment and structure
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Back     alignment and structure
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Back     alignment and structure
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Back     alignment and structure
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Back     alignment and structure
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} Back     alignment and structure
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Back     alignment and structure
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Back     alignment and structure
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A Back     alignment and structure
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A Back     alignment and structure
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Back     alignment and structure
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Back     alignment and structure
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Back     alignment and structure
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} Back     alignment and structure
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Back     alignment and structure
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Back     alignment and structure
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} Back     alignment and structure
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Back     alignment and structure
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Back     alignment and structure
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Back     alignment and structure
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Back     alignment and structure
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Back     alignment and structure
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Back     alignment and structure
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Back     alignment and structure
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 650
d2astb2284 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 3e-09
d2astb2284 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 4e-08
d2astb2284 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 7e-04
d1z7xw1460 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( 7e-06
d1z7xw1460 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( 2e-04
d1z7xw1 460 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( 3e-04
d1z7xw1460 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( 5e-04
d2omza2384 c.10.2.1 (A:33-416) Internalin A {Listeria monocyt 0.004
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.3 bits (134), Expect = 3e-09
 Identities = 38/211 (18%), Positives = 77/211 (36%), Gaps = 10/211 (4%)

Query: 329 SLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRME 388
            ++ + LS    +    L  ++    +L+ L +   R ++   +N++ K  ++L  L + 
Sbjct: 47  RVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLR-LSDPIVNTLAK-NSNLVRLNLS 103

Query: 389 CCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLK----SISRCSKLSSLKLGICSNIT 444
            C   S  A   +   C  L+EL+++      E       +    +       G   N+ 
Sbjct: 104 GCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQ 163

Query: 445 DEGLKHVGSTCSMLKELDLYRSSGITDVGVVAVSHGCPSLEMINIAYNERITDTSLISLS 504
              L  +   C  L  LDL  S  + +            L+ ++++    I   +L+ L 
Sbjct: 164 KSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ-LNYLQHLSLSRCYDIIPETLLELG 222

Query: 505 ECLRLKVLEIRGCPRISAIGLSAIAMGCRQL 535
           E   LK L++ G   +    L  +      L
Sbjct: 223 EIPTLKTLQVFGI--VPDGTLQLLKEALPHL 251
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 Back     information, alignment and structure
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 Back     information, alignment and structure
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 Back     information, alignment and structure
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 Back     information, alignment and structure
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 Back     information, alignment and structure
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 Back     information, alignment and structure
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query650
d1z7xw1460 Ribonuclease inhibitor {Human (Homo sapiens) [TaxI 99.88
d1z7xw1460 Ribonuclease inhibitor {Human (Homo sapiens) [TaxI 99.87
d2astb2284 Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa 99.87
d2astb2284 Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa 99.86
d2omza2384 Internalin A {Listeria monocytogenes [TaxId: 1639] 99.76
d2omza2384 Internalin A {Listeria monocytogenes [TaxId: 1639] 99.74
d2ca6a1344 Rna1p (RanGAP1), N-terminal domain {Fission yeast 99.63
d2ca6a1344 Rna1p (RanGAP1), N-terminal domain {Fission yeast 99.63
d1xkua_305 Decorin {Cow (Bos taurus) [TaxId: 9913]} 99.49
d1xkua_305 Decorin {Cow (Bos taurus) [TaxId: 9913]} 99.45
d1ogqa_313 Polygalacturonase inhibiting protein PGIP {Kidney 99.44
d1h6ua2227 Internalin H {Listeria monocytogenes [TaxId: 1639] 99.43
d1ozna_284 Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma 99.42
d1ogqa_313 Polygalacturonase inhibiting protein PGIP {Kidney 99.4
d1ozna_284 Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma 99.4
d2omxa2199 Internalin B {Listeria monocytogenes [TaxId: 1639] 99.34
d1h6ua2227 Internalin H {Listeria monocytogenes [TaxId: 1639] 99.31
d1p9ag_266 von Willebrand factor binding domain of glycoprote 99.3
d1h6ta2210 Internalin B {Listeria monocytogenes [TaxId: 1639] 99.28
d2omxa2199 Internalin B {Listeria monocytogenes [TaxId: 1639] 99.26
d1p9ag_266 von Willebrand factor binding domain of glycoprote 99.26
d1h6ta2210 Internalin B {Listeria monocytogenes [TaxId: 1639] 99.25
d1jl5a_353 Leucine rich effector protein YopM {Yersinia pesti 99.11
d1jl5a_353 Leucine rich effector protein YopM {Yersinia pesti 99.08
d1fs1a141 Skp2 {Human (Homo sapiens) [TaxId: 9606]} 99.06
d1a9na_162 Splicesomal U2A' protein {Human (Homo sapiens) [Ta 99.03
d1a9na_162 Splicesomal U2A' protein {Human (Homo sapiens) [Ta 98.94
d1xwdc1242 Follicle-stimulating hormone receptor {Human (Homo 98.83
d1dcea3124 Rab geranylgeranyltransferase alpha-subunit, C-ter 98.81
d1dcea3124 Rab geranylgeranyltransferase alpha-subunit, C-ter 98.77
d1xwdc1242 Follicle-stimulating hormone receptor {Human (Homo 98.76
d1m9la_198 Outer arm dynein light chain 1 {Green algae (Chlam 98.71
d1pgva_167 Tropomodulin C-terminal domain {nematode (Caenorha 98.66
d1io0a_166 Tropomodulin C-terminal domain {Chicken (Gallus ga 98.6
d1pgva_167 Tropomodulin C-terminal domain {nematode (Caenorha 98.57
d1m9la_198 Outer arm dynein light chain 1 {Green algae (Chlam 98.57
d1w8aa_192 Slit {Fruit fly (Drosophila melanogaster) [TaxId: 98.57
d1io0a_166 Tropomodulin C-terminal domain {Chicken (Gallus ga 98.51
d1nexb1100 Cdc4 F-box and linker domains {Baker's yeast (Sacc 98.5
d1w8aa_192 Slit {Fruit fly (Drosophila melanogaster) [TaxId: 98.5
d2ovrb1102 F-box/WD repeat-containing protein 7, FBXW7 {Human 98.33
d2ifga3156 High affinity nerve growth factor receptor, N-term 97.99
d2ifga3156 High affinity nerve growth factor receptor, N-term 97.93
d1p22a1118 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 97.92
d1koha1162 mRNA export factor tap {Human (Homo sapiens) [TaxI 97.41
d1koha1162 mRNA export factor tap {Human (Homo sapiens) [TaxI 97.41
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.9e-20  Score=188.32  Aligned_cols=206  Identities=21%  Similarity=0.271  Sum_probs=113.4

Q ss_pred             cCCCCcEEEecCCccChhhHH-----hhhcCCCCCeeecCCCCCCChhhHHHHH---hcCccCcEEeccCCCCCCHHHHH
Q 006331          404 QCQYLEELDITENEVNDEGLK-----SISRCSKLSSLKLGICSNITDEGLKHVG---STCSMLKELDLYRSSGITDVGVV  475 (650)
Q Consensus       404 ~~~~L~~L~l~~~~~~~~~~~-----~l~~~~~L~~L~l~~~~~i~~~~~~~l~---~~~~~L~~L~l~~~~~~~~~~~~  475 (650)
                      ..+.++.+.+.++.+.+....     .......++.+++++| .+.........   ...+.++.++++++ .+++.++.
T Consensus       224 ~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n-~i~~~~~~~~~~~l~~~~~l~~l~l~~n-~i~~~~~~  301 (460)
T d1z7xw1         224 SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGN-ELGDEGAR  301 (460)
T ss_dssp             HCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTC-CCHHHHHH
T ss_pred             ccccccccchhhccccccccchhhcccccccccccccccccc-cccccccccccccccccccccccccccc-cccccccc
Confidence            455566666666554433221     1123456666666666 55544433221   34566666666653 35555554


Q ss_pred             HHHh----cCCCCCEEeCCCCCCCChHHHHHhh----cCCCCcEEEecCCCCCChHHHHHHHh----cCCCccEEecCCC
Q 006331          476 AVSH----GCPSLEMINIAYNERITDTSLISLS----ECLRLKVLEIRGCPRISAIGLSAIAM----GCRQLAMLDIKKC  543 (650)
Q Consensus       476 ~~~~----~~~~L~~L~l~~~~~l~~~~~~~l~----~~~~L~~L~l~~~~~l~~~~~~~~~~----~~~~L~~L~l~~~  543 (650)
                      .+..    ..+.|+.+.+++| .++......+.    ..++|++|++++| .+++.++..+..    ..+.|++|++++|
T Consensus       302 ~l~~~l~~~~~~L~~l~l~~~-~l~~~~~~~l~~~~~~~~~L~~L~Ls~N-~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n  379 (460)
T d1z7xw1         302 LLCETLLEPGCQLESLWVKSC-SFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC  379 (460)
T ss_dssp             HHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             hhhcccccccccccccccccc-chhhhhhhhcccccccccchhhhheeee-cccCcccchhhhhhhcccCCCCEEECCCC
Confidence            4432    2346777777776 46555544443    3566777777776 566655444432    3455777777777


Q ss_pred             CCCChhhHHHHH---HhCCcCCeEEeecCCCCcHHHHHHh-----cCCCCCceeeecccCC--CHHHHHHHHHhCcccce
Q 006331          544 FNINDNGMIPLA---QYSQNLKQINLSYCSVTDVGLIALA-----SINCLQNMTILHVVGL--TPNGLVNALLRCQGLIK  613 (650)
Q Consensus       544 ~~l~~~~~~~~~---~~~~~L~~L~l~~~~i~~~~~~~~~-----~l~~L~~L~l~~~~~~--~~~~~~~~~~~~~~L~~  613 (650)
                       .+++.++..++   ..+++|++|++++|+|++.+...+.     ....|+.|.+.+..-.  ....+.+.....|+|+.
T Consensus       380 -~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~~~~~l~~  458 (460)
T d1z7xw1         380 -DVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRV  458 (460)
T ss_dssp             -CCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEE
T ss_pred             -CCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHHHHHHHhCCCCEE
Confidence             67766655544   3356777777777777776665543     2234666666543211  12233334566777766


Q ss_pred             e
Q 006331          614 V  614 (650)
Q Consensus       614 l  614 (650)
                      |
T Consensus       459 ~  459 (460)
T d1z7xw1         459 I  459 (460)
T ss_dssp             E
T ss_pred             e
Confidence            5
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Back     information, alignment and structure
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Back     information, alignment and structure
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Back     information, alignment and structure
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Back     information, alignment and structure
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Back     information, alignment and structure
>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Back     information, alignment and structure
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure