Citrus Sinensis ID: 006334
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 650 | 2.2.26 [Sep-21-2011] | |||||||
| Q9MA55 | 668 | Acyl-CoA-binding domain-c | no | no | 0.461 | 0.449 | 0.321 | 3e-37 | |
| Q5EA50 | 372 | Rab9 effector protein wit | yes | no | 0.423 | 0.739 | 0.317 | 8e-37 | |
| Q8RWD9 | 648 | Acyl-CoA-binding domain-c | no | no | 0.433 | 0.435 | 0.335 | 4e-35 | |
| Q7Z6M1 | 372 | Rab9 effector protein wit | yes | no | 0.423 | 0.739 | 0.313 | 1e-34 | |
| P87061 | 1147 | Tip elongation aberrant p | yes | no | 0.412 | 0.233 | 0.315 | 6e-33 | |
| Q7M3S9 | 943 | RING finger protein B OS= | no | no | 0.423 | 0.291 | 0.309 | 1e-32 | |
| Q4V8F4 | 372 | Rab9 effector protein wit | yes | no | 0.427 | 0.747 | 0.327 | 2e-32 | |
| Q8VCH5 | 380 | Rab9 effector protein wit | yes | no | 0.492 | 0.842 | 0.306 | 2e-31 | |
| Q6AXB2 | 366 | Rab9 effector protein wit | N/A | no | 0.44 | 0.781 | 0.277 | 1e-30 | |
| Q5ZJ37 | 371 | Rab9 effector protein wit | no | no | 0.424 | 0.743 | 0.298 | 1e-29 |
| >sp|Q9MA55|ACBP4_ARATH Acyl-CoA-binding domain-containing protein 4 OS=Arabidopsis thaliana GN=ACBP4 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 157 bits (396), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 105/327 (32%), Positives = 160/327 (48%), Gaps = 27/327 (8%)
Query: 15 WLYPKVLGFNPPERWGHSACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMVWS----TLAT 70
W P+ G P R+ H A +YI+GG G + GD+ +L+L + WS +AT
Sbjct: 171 WTAPQTSGQRPKARYEHGAAVIQDKMYIYGGNHNGRYLGDLHVLDLKSWTWSRVETKVAT 230
Query: 71 TGQGP------GPRDSHSAILWGHKMIVFGG-TNGYKKVNDLHILDLESKEWMRPECRGA 123
Q P HS I W +K++ GG T + + + D + W + G
Sbjct: 231 ESQETSTPTLLAPCAGHSLIAWDNKLLSIGGHTKDPSESMQVKVFDPHTITWSMLKTYGK 290
Query: 124 PPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDS 183
PP R + T+VG +VIFGG + + + LNDLH+LDL TM W G P PR
Sbjct: 291 PPVSRGGQSVTMVG-KTLVIFGGQ-DAKRSLLNDLHILDLDTMTWDEIDAVGVSPSPRSD 348
Query: 184 HSSNVIANR-LFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTK 242
H++ V A R L ++GG D+ +LD+ ++ WSR A G +P RAGHA + IG
Sbjct: 349 HAAAVHAERFLLIFGGGSHATCFDDLHVLDLQTMEWSRPAQQGDAPTPRAGHAGVTIGEN 408
Query: 243 VYIIGGVGDKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVTGSDIVIYGGCGED 302
+I+GG +K ++ +LN+ST +WS + + QGR A+ G +V+ GED
Sbjct: 409 WFIVGGGDNKSGASESVVLNMSTLAWSVVASV----QGRVPLAS--EGLSLVVSSYNGED 462
Query: 303 ERPLNELLVLQLGAEHPNYRYNISMCK 329
+++ G + Y I++ K
Sbjct: 463 -------VLVAFGGYNGRYNNEINLLK 482
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Binds medium- and long-chain acyl-CoA esters with very high affinity. Can interact in vitro with oleoyl-CoA, barely with palmitoyl-CoA, but not with arachidonyl-CoA. May function as an intracellular carrier of acyl-CoA esters. Plays a role in the biosynthesis of membrane lipids including galactolipids and phospholipids. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q5EA50|RABEK_BOVIN Rab9 effector protein with kelch motifs OS=Bos taurus GN=RABEPK PE=2 SV=1 | Back alignment and function description |
|---|
Score = 155 bits (393), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 92/290 (31%), Positives = 144/290 (49%), Gaps = 15/290 (5%)
Query: 11 RAAMWLYPKVLGFNPPERWGHSACY-------SHGAVYIFGGCCGGLHFGDVLMLNLDTM 63
R W ++G +P R GHS Y G V+I GG F DV ++L T
Sbjct: 14 RKETWYTLTLVGDSPCARVGHSCSYLPPVGDAERGKVFIVGGADPNRSFSDVHTIDLGTH 73
Query: 64 VWSTLATTGQGPGPRDSHSAILWG---HKMIVFGGTNGYKKVNDLHILDLESKEWMRPEC 120
W LAT+ +G PR H++ + H + VFGG + N L +L+ +++ W PE
Sbjct: 74 QWD-LATS-EGLLPRYEHTSFIPSCTPHSIWVFGGADQSGNRNCLQVLNPDTRTWTTPEV 131
Query: 121 RGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLND--LHVLDLKTMRWASPAVKGDIP 178
G PPSPR HT++ D++ +FGG GE A + D LHV D T+ W+ P G P
Sbjct: 132 TGPPPSPRTFHTSSAAIGDQLYVFGG-GERGAQPVQDVQLHVFDANTLTWSQPETHGKPP 190
Query: 179 VPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAIN 238
PR H +LF++GG GD ++ D+ +D++ + W +L G++P A H+A+
Sbjct: 191 SPRHGHVMVAAGTKLFIHGGLAGDNFYDDLHCIDISDMKWQKLRPTGAAPTGCAAHSAVA 250
Query: 239 IGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVV 288
+G +Y+ GG+ N ++ ++ W+ L P GR H+ +
Sbjct: 251 VGKHLYVFGGMTPTGALNTMYQYHIEKQHWTLLKFENSPPTGRLDHSMCI 300
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Rab9 effector required for endosome to trans-Golgi network (TGN) transport. Bos taurus (taxid: 9913) |
| >sp|Q8RWD9|ACBP5_ARATH Acyl-CoA-binding domain-containing protein 5 OS=Arabidopsis thaliana GN=ACBP5 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 150 bits (378), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 101/301 (33%), Positives = 150/301 (49%), Gaps = 19/301 (6%)
Query: 15 WLYPKVLGFNPPERWGHSACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLAT---T 71
W P+ G P R+ H A +Y++GG G + GD+ +L+L WS + T T
Sbjct: 172 WTAPRTSGQPPKARYQHGAAVIQDKMYMYGGNHNGRYLGDLHVLDLKNWTWSRVETKVVT 231
Query: 72 G--QGPGPRD-----SHSAILWGHKMIVFGG-TNGYKKVNDLHILDLESKEWMRPECRGA 123
G + P HS I W ++++ GG T + + + DL W + G
Sbjct: 232 GSQETSSPAKLTHCAGHSLIPWDNQLLSIGGHTKDPSESMPVMVFDLHCCSWSILKTYGK 291
Query: 124 PPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDS 183
PP R + TLVG +VIFGG + + + LNDLH+LDL TM W G P PR
Sbjct: 292 PPISRGGQSVTLVGKS-LVIFGGQ-DAKRSLLNDLHILDLDTMTWEEIDAVGSPPTPRSD 349
Query: 184 HSSNVIANR-LFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTK 242
H++ V A R L ++GG D+ +LD+ ++ WSR G +P RAGHA + IG
Sbjct: 350 HAAAVHAERYLLIFGGGSHATCFDDLHVLDLQTMEWSRHTQQGDAPTPRAGHAGVTIGEN 409
Query: 243 VYIIGGVGDKHYYNDIWILNVSTCSWSQLDTCGQQ-PQGRFSHAAVVT---GSDIVI-YG 297
YI+GG +K + +LN+ST +WS + + + P + VV+ G DIV+ +G
Sbjct: 410 WYIVGGGDNKSGASKTVVLNMSTLAWSVVTSVQEHVPLASEGLSLVVSSYNGEDIVVAFG 469
Query: 298 G 298
G
Sbjct: 470 G 470
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Binds medium- and long-chain acyl-CoA esters with very high affinity. Can interact in vitro with oleoyl-CoA, barely with palmitoyl-CoA, but not with arachidonyl-CoA. May function as an intracellular carrier of acyl-CoA esters. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7Z6M1|RABEK_HUMAN Rab9 effector protein with kelch motifs OS=Homo sapiens GN=RABEPK PE=1 SV=1 | Back alignment and function description |
|---|
Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/290 (31%), Positives = 140/290 (48%), Gaps = 15/290 (5%)
Query: 11 RAAMWLYPKVLGFNPPERWGHSACY-------SHGAVYIFGGCCGGLHFGDVLMLNLDTM 63
R A W V G +P R GHS Y G V+I GG F DV ++L
Sbjct: 14 RKATWYTLTVPGDSPCARVGHSCSYLPPVGNAKRGKVFIVGGANPNRSFSDVHTMDLGKH 73
Query: 64 VWSTLATTGQGPGPRDSHSAILWG---HKMIVFGGTNGYKKVNDLHILDLESKEWMRPEC 120
W T +G PR H++ + ++ VFGG N N L +L+ E++ W PE
Sbjct: 74 QWD--LDTCKGLLPRYEHASFIPSCTPDRIWVFGGANQSGNRNCLQVLNPETRTWTTPEV 131
Query: 121 RGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLND--LHVLDLKTMRWASPAVKGDIP 178
PPSPR HT++ +++ +FGG GE A + D LHV D T+ W+ P G+ P
Sbjct: 132 TSPPPSPRTFHTSSAAIGNQLYVFGG-GERGAQPVQDTKLHVFDANTLTWSQPETLGNPP 190
Query: 179 VPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAIN 238
PR H +LF++GG GD+++ D+ +D++ + W +L G++P A H+A+
Sbjct: 191 SPRHGHVMVAAGTKLFIHGGLAGDRFYDDLHCIDISDMKWQKLNPTGAAPAGCAAHSAVA 250
Query: 239 IGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVV 288
+G VYI GG+ + ++ + W+ L P GR H+ +
Sbjct: 251 MGKHVYIFGGMTPAGALDTMYQYHTEEQHWTLLKFDTLLPPGRLDHSMCI 300
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Rab9 effector required for endosome to trans-Golgi network (TGN) transport. Homo sapiens (taxid: 9606) |
| >sp|P87061|TEA1_SCHPO Tip elongation aberrant protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tea1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 142 bits (359), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 90/285 (31%), Positives = 142/285 (49%), Gaps = 17/285 (5%)
Query: 28 RWGHSA-CYSHGA--VYIFGGCCGGLH-FGDVLMLNLDTMVWSTLATTGQGPGPRDSHSA 83
R+ H++ Y+ G +YIFGG D+ +LNL T +++L + G+ P PR H++
Sbjct: 80 RYSHASHLYAEGGQEIYIFGGVASDSQPKNDLWVLNLATSQFTSLRSLGETPSPRLGHAS 139
Query: 84 ILWGHKMIVFGGTNGY----KKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDD 139
IL G+ IVFGG + ++ N L++L+ S W + GA PS R HT + +G
Sbjct: 140 ILIGNAFIVFGGLTNHDVADRQDNSLYLLNTSSLVWQKANASGARPSGRYGHTISCLG-S 198
Query: 140 KMVIFGGSGEGEANYLNDLHVLDLKTM-----RWASPAVKGDIPVPRDSHSSNVIANRLF 194
K+ +FGG Y NDL DL + RW +V D P R H + +++L+
Sbjct: 199 KICLFGGRLLDY--YFNDLVCFDLNNLNTSDSRWELASVVNDPPPARAGHVAFTFSDKLY 256
Query: 195 VYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGG-VGDKH 253
++GG G + D+ WS++ G +P RAGHAA + +Y+ GG D
Sbjct: 257 IFGGTDGANFFNDLWCYHPKQSAWSKVETFGVAPNPRAGHAASVVEGILYVFGGRASDGT 316
Query: 254 YYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVTGSDIVIYGG 298
+ ND++ +S+ W +L P R SH +G +V+ GG
Sbjct: 317 FLNDLYAFRLSSKHWYKLSDLPFTPSPRSSHTLSCSGLTLVLIGG 361
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Cell polarity protein. Acts as an end marker, directing the growth machinery to the cell poles. Involved in the regulation of microtubular organization, affecting the maintenance of a single central axis. Prevents the curling of microtubule tips around the cell ends and is required for the retention of polarity factors such as pom1, tip1 and tea2 at the cell ends, necessary for the cell to grow in a straight line. Links tip1 and tea4 in a common complex. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q7M3S9|RNGB_DICDI RING finger protein B OS=Dictyostelium discoideum GN=rngB PE=2 SV=2 | Back alignment and function description |
|---|
Score = 141 bits (356), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/294 (30%), Positives = 143/294 (48%), Gaps = 19/294 (6%)
Query: 25 PPERWGHS-ACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSA 83
P RWGH+ +G+ +I G F D+ N+ WS + G P R HSA
Sbjct: 14 PEPRWGHTGTTLPNGSGFIVFGGNSNRAFNDIQYYNIFNNSWSKIEAVGNAPSERYGHSA 73
Query: 84 ILW---------GHKMIVFGGTNGYKKVNDLHILDLES-KEWMRPECRGAPPSPRESHTA 133
+L+ +++I FGG K +D++IL + S + ++ + R HTA
Sbjct: 74 VLYQSQSRPYSDSYQIIFFGGRATSKPFSDINILYVNSNRSFIWKQVTTKSIEGRAGHTA 133
Query: 134 TLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSS-NVIANR 192
+V +V+FGG ++ Y N + + L++ W G IP R +HS+ V N+
Sbjct: 134 -VVYRQNLVVFGGHNNHKSKYYNSVLLFSLESNEWRQQVCGGVIPSARATHSTFQVNNNK 192
Query: 193 LFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINI-GTKVYIIGGVG- 250
+F++GG G +Y+ DI LD+ + W ++ G+ P R+GH+A I K+ I GG G
Sbjct: 193 MFIFGGYDGKKYYNDIYYLDLETWIWKKVEAKGTPPKPRSGHSATMIQNNKLMIFGGCGS 252
Query: 251 DKHYYNDIWILNVSTCS---WSQLDTCGQQ-PQGRFSHAAVVTGSDIVIYGGCG 300
D ++ NDI IL++ + W Q G + PQ RF H G + IY G G
Sbjct: 253 DSNFLNDIHILHIEGANEYRWEQPSYLGLEIPQARFRHTTNFIGGRVYIYAGTG 306
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Dictyostelium discoideum (taxid: 44689) |
| >sp|Q4V8F4|RABEK_RAT Rab9 effector protein with kelch motifs OS=Rattus norvegicus GN=Rabepk PE=2 SV=1 | Back alignment and function description |
|---|
Score = 140 bits (354), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 96/293 (32%), Positives = 140/293 (47%), Gaps = 15/293 (5%)
Query: 8 NAKRAAMWLYPKVLGFNPPERWGHSACY-------SHGAVYIFGGCCGGLHFGDVLMLNL 60
+ R A W G P R GHS Y G V+I GG F DV ++L
Sbjct: 11 DKPRKAAWYTLTCPGDKPCPRVGHSCSYFPPVGEAEKGKVFIVGGANPNQSFSDVHTMDL 70
Query: 61 DTMVWSTLATTGQGPGPRDSHSAILWG---HKMIVFGGTNGYKKVNDLHILDLESKEWMR 117
T W T T +G PR H++ L H + VFGG + N L +++ E++ W
Sbjct: 71 GTHRWDT--ATREGLLPRYEHASFLPSCSPHSIWVFGGADQSGNRNCLQVMNPEARTWST 128
Query: 118 PECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLND--LHVLDLKTMRWASPAVKG 175
PE G PPSPR HT++ + + +FGG GE A + D LHV D T+ WA P G
Sbjct: 129 PEVTGCPPSPRTFHTSSAAIGNHLYVFGG-GERGAQPVQDVKLHVFDANTLTWAQPETHG 187
Query: 176 DIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHA 235
P PR H+ +LF++GG GD++ D+ +D+ ++W +L G++P A HA
Sbjct: 188 SPPSPRHGHAMVAAGTKLFIHGGLAGDRFFDDLHCIDIGDMSWQKLGPTGTAPVGCAAHA 247
Query: 236 AINIGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVV 288
A+ +G VY+ GG+ N ++ + W+ L P GR H+ V
Sbjct: 248 AVAVGHHVYVFGGMTATGALNTMYKYHTEKQHWTILQFDTSLPPGRLDHSMCV 300
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Rab9 effector required for endosome to trans-Golgi network (TGN) transport. Rattus norvegicus (taxid: 10116) |
| >sp|Q8VCH5|RABEK_MOUSE Rab9 effector protein with kelch motifs OS=Mus musculus GN=Rabepk PE=2 SV=2 | Back alignment and function description |
|---|
Score = 137 bits (345), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 107/349 (30%), Positives = 156/349 (44%), Gaps = 29/349 (8%)
Query: 8 NAKRAAMWLYPKVLGFNPPERWGHSACY-------SHGAVYIFGGCCGGLHFGDVLMLNL 60
+ R A W G P R GHS Y G ++I GG F DV ++L
Sbjct: 19 DKPRKATWYTLTCPGDRPCPRVGHSCSYFPPVGDAESGKIFIVGGANPNQSFSDVHTMDL 78
Query: 61 DTMVWSTLATTGQGPGPRDSHSAILWG---HKMIVFGGTNGYKKVNDLHILDLESKEWMR 117
T W T T +G PR H++ L H + VFGG + N L ++ E + W
Sbjct: 79 GTHQWDT--ATREGLLPRYEHASFLPSCSPHSIWVFGGADQSGNRNCLQVMSPEDRTWST 136
Query: 118 PECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLND--LHVLDLKTMRWASPAVKG 175
PE G+PPSPR HT++ +++ +FGG GE A + D LHV D T+ W+ P G
Sbjct: 137 PEVTGSPPSPRTFHTSSAAIGNQLYVFGG-GERGAQPVEDVKLHVFDANTLTWSQPETHG 195
Query: 176 DIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHA 235
P PR H +LF++GG GD++ D+ +D+ ++W +L G+ P A HA
Sbjct: 196 SPPSPRHGHVMVAAGTKLFIHGGLAGDKFFDDLHCIDIGDMSWQKLGPTGAVPVGCAAHA 255
Query: 236 AINIGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVT------ 289
A+ +G VY+ GG+ N ++ + W+ L P GR H+ V
Sbjct: 256 AVAVGHHVYMFGGMTATGALNMMYKYHTEKQHWTVLQFDTSLPAGRLDHSMCVIPWPVMS 315
Query: 290 -----GSDIVIYGGCGEDER-PLNELLVLQLGAEHPNYRYNISMCKIFG 332
SD VI +DE+ E Q G H + +C +FG
Sbjct: 316 TSENKDSDSVIL--TLQDEKGDAAEKAETQSGGPHEESPTTVLLCFVFG 362
|
Rab9 effector required for endosome to trans-Golgi network (TGN) transport. Mus musculus (taxid: 10090) |
| >sp|Q6AXB2|RABEK_XENLA Rab9 effector protein with kelch motifs OS=Xenopus laevis GN=rabepk PE=2 SV=1 | Back alignment and function description |
|---|
Score = 135 bits (339), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 83/299 (27%), Positives = 132/299 (44%), Gaps = 13/299 (4%)
Query: 1 MSSLGGENAKRAAMWLYPKVLGFNPPERWGHSACY-------SHGAVYIFGGCCGGLHFG 53
+ L E+ + + W G P R GH+ Y S G + I GG +
Sbjct: 4 LEVLDPEDLPKMSTWYALVPRGEGPSARVGHTCMYVSSSEDSSKGKILILGGADPSGCYS 63
Query: 54 DVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHK---MIVFGGTNGYKKVNDLHILDL 110
D +++LD W +G PR H++ + + VF G + N + +L+
Sbjct: 64 DTHIIDLDNHEWDN--PDSEGLLPRYEHASFISASNPGNIWVFAGAEQAENRNCVQVLNP 121
Query: 111 ESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEG-EANYLNDLHVLDLKTMRWA 169
+ W P+ G PPSPR HT++ +DK+ +FGG +G E +L++ D TM W
Sbjct: 122 GAASWKSPKVMGTPPSPRTFHTSSAAIEDKLYVFGGGEKGAEPVADTNLYIYDAATMTWT 181
Query: 170 SPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPG 229
P GD P R H + +LFV+GG G + D+ +D +++ W RL G P
Sbjct: 182 QPVTSGDPPQARHGHVLTALGTKLFVHGGMAGSTFFKDMFCIDTDTMKWERLKTKGDLPP 241
Query: 230 VRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVV 288
A H+++ + +YI GG+ N ++ N T W QL P R H+ +
Sbjct: 242 ACAAHSSVAWKSYIYIFGGMTSTGATNSMYRYNTETLLWKQLKFDSACPPARLDHSMCL 300
|
Rab9 effector required for endosome to trans-Golgi network (TGN) transport. Xenopus laevis (taxid: 8355) |
| >sp|Q5ZJ37|RABEK_CHICK Rab9 effector protein with kelch motifs OS=Gallus gallus GN=RABEPK PE=2 SV=1 | Back alignment and function description |
|---|
Score = 132 bits (331), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 85/285 (29%), Positives = 125/285 (43%), Gaps = 9/285 (3%)
Query: 11 RAAMWLYPKVLGFNPPERWGHSACY---SHGAVYIFGGCCGGLHFGDVLMLNLDTMVWST 67
+A W G P R GH + G V + GG F D + L +W+
Sbjct: 16 QAGKWYRMAPRGEWPRGRVGHGCLFVPGGSGRVLLLGGADPAGAFADAHFVELGAHLWAP 75
Query: 68 LATTGQGPGPRDSHSAILWGHK---MIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAP 124
A +G P R H+ L + + VFGG + + + +LD E W PE G P
Sbjct: 76 AAWSGLRP--RYEHATFLSACRPPRLWVFGGAHRAGNRSCVQVLDPEIGTWESPEVTGIP 133
Query: 125 PSPRESHTATLVGDDKMVIFGGSGEG-EANYLNDLHVLDLKTMRWASPAVKGDIPVPRDS 183
P PR HT++ D + +FGG +G E LHV D + W P GD P PR
Sbjct: 134 PLPRTFHTSSAAIGDCLYVFGGGDKGAEPVKDQQLHVFDTVALAWTQPDTHGDPPSPRHG 193
Query: 184 HSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKV 243
H + +LF++GG GD ++ D+ +D + W ++A G PG RA H++ +
Sbjct: 194 HVVVAVGTKLFIHGGLAGDIFYNDLFCIDTTDMKWVKIAATGDVPGGRASHSSAVFKDHL 253
Query: 244 YIIGGVGDKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVV 288
YI GG+G + + ++ W+ L P GR HA V
Sbjct: 254 YIFGGIGPDGTLDTTYKYHIEEQQWTLLQFDSPLPAGRLDHAMCV 298
|
Rab9 effector required for endosome to trans-Golgi network (TGN) transport. Gallus gallus (taxid: 9031) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 650 | ||||||
| 296089783 | 640 | unnamed protein product [Vitis vinifera] | 0.963 | 0.978 | 0.664 | 0.0 | |
| 359487672 | 637 | PREDICTED: LOW QUALITY PROTEIN: acyl-CoA | 0.961 | 0.981 | 0.650 | 0.0 | |
| 147819853 | 672 | hypothetical protein VITISV_023418 [Viti | 0.950 | 0.919 | 0.645 | 0.0 | |
| 255542910 | 616 | kelch repeat protein, putative [Ricinus | 0.933 | 0.985 | 0.631 | 0.0 | |
| 449517790 | 606 | PREDICTED: LOW QUALITY PROTEIN: rab9 eff | 0.924 | 0.991 | 0.608 | 0.0 | |
| 224122912 | 529 | predicted protein [Populus trichocarpa] | 0.807 | 0.992 | 0.687 | 0.0 | |
| 449454133 | 585 | PREDICTED: LOW QUALITY PROTEIN: uncharac | 0.869 | 0.965 | 0.598 | 0.0 | |
| 242052729 | 613 | hypothetical protein SORBIDRAFT_03g01244 | 0.918 | 0.973 | 0.526 | 1e-177 | |
| 115436122 | 624 | Os01g0300900 [Oryza sativa Japonica Grou | 0.923 | 0.961 | 0.523 | 1e-177 | |
| 293334253 | 625 | uncharacterized protein LOC100384701 [Ze | 0.930 | 0.968 | 0.497 | 1e-175 |
| >gi|296089783|emb|CBI39602.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 834 bits (2154), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/652 (66%), Positives = 500/652 (76%), Gaps = 26/652 (3%)
Query: 1 MSSLGGENAKRAAMWLYPKVLGFNPPERWGHSACYSHGAVYIFGGCCGGLHFGDVLMLNL 60
M SLGGE AK+ AMWLYPKVLGFNP ERWGHSACYSHG VY+FGGCCGGLHF DVL+LNL
Sbjct: 1 MGSLGGETAKKKAMWLYPKVLGFNPSERWGHSACYSHGLVYVFGGCCGGLHFCDVLVLNL 60
Query: 61 DTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPEC 120
DTM W TL TTGQGPGPRDSHSA++ G +MIVFGGTNG KKVNDLHILDL SKEW RPEC
Sbjct: 61 DTMAWDTLVTTGQGPGPRDSHSAVILGQRMIVFGGTNGSKKVNDLHILDLGSKEWTRPEC 120
Query: 121 RGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVP 180
RGAPPSPRESHTATLVGD+K+VIFGGSGEGEANYLND HVLDLKTMRW SP VKGD P P
Sbjct: 121 RGAPPSPRESHTATLVGDEKLVIFGGSGEGEANYLNDFHVLDLKTMRWTSPEVKGDTPAP 180
Query: 181 RDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIG 240
RDSHS+ I N+L VYGGDCGD+YHGDID+LDM++LTWSRL++ GSSPGVRAGHAA++IG
Sbjct: 181 RDSHSAVAIGNKLIVYGGDCGDRYHGDIDILDMDTLTWSRLSVQGSSPGVRAGHAAVSIG 240
Query: 241 TKVYIIGGVGDKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVTGSDIVIYGGCG 300
TKVYIIGGVGDKHYYND+W+L+V TC W+QL+ GQQPQGRFSH A+VT SDI IYGGCG
Sbjct: 241 TKVYIIGGVGDKHYYNDVWVLDVITCLWNQLEIRGQQPQGRFSHTAIVTDSDIAIYGGCG 300
Query: 301 EDERPLNELLVLQLGAEHPNYRYNISMCKIFGNHWNQAKRRFPGGVENNSKTIFPGNN-- 358
EDERPLNELLVLQLG+EHPN RYNIS+CKIFGNHW+ KRRF E+NSKT+ GN+
Sbjct: 301 EDERPLNELLVLQLGSEHPNGRYNISLCKIFGNHWSHGKRRFHREAESNSKTMLFGNDVE 360
Query: 359 EVKKGAHETELEAKQTFPLSSDTLQSKKRRAFNSTTVWEVESEQEEHSLSLSQHSSPSQS 418
V+K A E ELE+ ++ SSDTL K+RR N WE ESEQEEHSLSLSQ SSPSQS
Sbjct: 361 VVRKDACEPELESNRSVRFSSDTLHPKRRRTGNLKG-WEFESEQEEHSLSLSQSSSPSQS 419
Query: 419 DHEQTPVPKVSE-SLAGSQGFYLFNKQVNQIPKCFQPRNVASNQREFRNLIQRTPEDHQF 477
D EQTP+ K ++ S+A S G LF + P Q NV+S Q+E R++ Q + D F
Sbjct: 420 DQEQTPIGKATDSSIAASLGVPLFRQ-----PSNSQANNVSSKQKEPRSVDQSSRHDICF 474
Query: 478 SREHQNHKKPEQCP-HSVHTGGPATQHPADLQSMEAGPIQNLIGAEVQGKVDGAFDSGFL 536
E QN +KPE + P Q P D LIGAE++GKVDGAFDSG+L
Sbjct: 475 LGERQNQQKPENFQRQQLQYHQPPEQKPLD-----------LIGAEIRGKVDGAFDSGYL 523
Query: 537 MTATINGRIFRGVLFPPGPGIVSRGSPFTQ-APSPPSHMALAQSFPNSNHIE--RFKPSQ 593
MTAT+NG+IFRGVLF PGP +VSRG Q A SP +H+A+ + P H E FKPSQ
Sbjct: 524 MTATVNGQIFRGVLFSPGPAMVSRGIVLGQSASSPMAHVAVTRPCPKLIHAEPSLFKPSQ 583
Query: 594 QPVGFSTPKSVRNHQQTQVSRQFPICRSTSPLAEQPKQRSDLQGVVLTLGGP 645
Q + F P+S + ++Q ++R P+ RS +P PK R+DLQGVVLTLGGP
Sbjct: 584 QAIAFPVPESGQAYRQAVIARPSPVVRSITP--AHPKLRTDLQGVVLTLGGP 633
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359487672|ref|XP_002277646.2| PREDICTED: LOW QUALITY PROTEIN: acyl-CoA-binding domain-containing protein 4 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 811 bits (2095), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/650 (65%), Positives = 488/650 (75%), Gaps = 25/650 (3%)
Query: 1 MSSLGGENAKRAAMWLYPKVLGFNPPERWGHSACYSHGAVYIFGGCCGGLHFGDVLMLNL 60
M SLGGE AK+ AMWLYPKVLGFNP ERWGHSACYSHG VY+FGGCCGGLHF DVL+LNL
Sbjct: 1 MGSLGGETAKKKAMWLYPKVLGFNPSERWGHSACYSHGLVYVFGGCCGGLHFCDVLVLNL 60
Query: 61 DTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPEC 120
DTM W TL TTGQGPGPRDSHSA++ G +MIVFGGTNG KKVNDLHILDL SKEW RPEC
Sbjct: 61 DTMAWDTLVTTGQGPGPRDSHSAVILGQRMIVFGGTNGSKKVNDLHILDLGSKEWTRPEC 120
Query: 121 RGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVP 180
RGAPPSPRESHTATLVGD+K+VIFGGSGEGEANYLND HVLDLKTMRW SP VKGD P P
Sbjct: 121 RGAPPSPRESHTATLVGDEKLVIFGGSGEGEANYLNDFHVLDLKTMRWTSPEVKGDTPAP 180
Query: 181 RDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIG 240
RDSHS+ I N+L VYGGDCGD+YHGDID+LDM++LTWSRL++ GSSPGVRAGHAA++IG
Sbjct: 181 RDSHSAVAIGNKLIVYGGDCGDRYHGDIDILDMDTLTWSRLSVQGSSPGVRAGHAAVSIG 240
Query: 241 TKVYIIGGVGDKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVTGSDIVIYGGCG 300
TKVYIIGGVGDKHYYND+W+L+V TC W+QL+ GQQPQGRFSH A+VT SDI IYGGCG
Sbjct: 241 TKVYIIGGVGDKHYYNDVWVLDVITCLWNQLEIRGQQPQGRFSHTAIVTDSDIAIYGGCG 300
Query: 301 EDERPLNELLVLQLGAEHPNYRYNISMCKIFGNHWNQAKRRFPGGVENNSKTIFPGNNEV 360
EDERPLNELLVLQLG+EHPN RYNIS+CKIFGNHW+ KRRF E+NS P N +
Sbjct: 301 EDERPLNELLVLQLGSEHPNGRYNISLCKIFGNHWSHGKRRFHREAESNSLRFVP-NRKT 359
Query: 361 KKGAHETELEAKQTFPLSSDTLQSKKRRAFNSTTVWEVESEQEEHSLSLSQHSSPSQSDH 420
+ + + F DTL K+RR N WE ESEQEEHSLSLSQ SSPSQSD
Sbjct: 360 MFMSSFXVIRTQFFFYFLVDTLHPKRRRTGNLKG-WEFESEQEEHSLSLSQSSSPSQSDQ 418
Query: 421 EQTPVPKVSE-SLAGSQGFYLFNKQVNQIPKCFQPRNVASNQREFRNLIQRTPEDHQFSR 479
EQTP+ K ++ S+A S G LF + N Q NV+S Q+E R++ Q + D F
Sbjct: 419 EQTPIGKATDSSIAASLGVPLFRQPSNS-----QANNVSSKQKEPRSVDQSSRHDICFLG 473
Query: 480 EHQNHKKPEQCP-HSVHTGGPATQHPADLQSMEAGPIQNLIGAEVQGKVDGAFDSGFLMT 538
E QN +KPE + P Q P D LIGAE++GKVDGAFDSG+LMT
Sbjct: 474 ERQNQQKPENFQRQQLQYHQPPEQKPLD-----------LIGAEIRGKVDGAFDSGYLMT 522
Query: 539 ATINGRIFRGVLFPPGPGIVSRGSPFTQ-APSPPSHMALAQSFPNSNHIE--RFKPSQQP 595
AT+NG+IFRGVLF PGP +VSRG Q A SP +H+A+ + P H E FKPSQQ
Sbjct: 523 ATVNGQIFRGVLFSPGPAMVSRGIVLGQSASSPMAHVAVTRPCPKLIHAEPSLFKPSQQA 582
Query: 596 VGFSTPKSVRNHQQTQVSRQFPICRSTSPLAEQPKQRSDLQGVVLTLGGP 645
+ F P+S + ++Q ++R P+ RS +P PK R+DLQGVVLTLGGP
Sbjct: 583 IAFPVPESGQAYRQAVIARPSPVVRSITP--AHPKLRTDLQGVVLTLGGP 630
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147819853|emb|CAN71813.1| hypothetical protein VITISV_023418 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 807 bits (2085), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/658 (64%), Positives = 492/658 (74%), Gaps = 40/658 (6%)
Query: 1 MSSLGGENAKRAAMWLYPKVLGFNPPERWGHSACYSHGAVYIFGGCCGGLHFGDVLMLNL 60
M SLGGE AK+ AMWLYPKVLGFNP ERWGHSACYSHG VY+FGGCCGGLHF DVL+LNL
Sbjct: 1 MGSLGGETAKKKAMWLYPKVLGFNPSERWGHSACYSHGLVYVFGGCCGGLHFCDVLVLNL 60
Query: 61 DTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPEC 120
DTM W TL TTGQGPGPRDSHSA++ G +MIVFGGTNG KKVNDLHILDL SKEW RPEC
Sbjct: 61 DTMAWDTLVTTGQGPGPRDSHSAVILGQRMIVFGGTNGSKKVNDLHILDLGSKEWTRPEC 120
Query: 121 RGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVP 180
RGAPPSPRESHTATLVGD+K+VIFGGSGEGEANYLND HVLDLKTMRW SP VKGD P P
Sbjct: 121 RGAPPSPRESHTATLVGDEKLVIFGGSGEGEANYLNDFHVLDLKTMRWTSPEVKGDTPAP 180
Query: 181 RDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIG 240
RDSHS+ I N+L VYGGDCGD+YHGDID+LDM++LTWSRL++ GSSPGVRAGHAA++IG
Sbjct: 181 RDSHSAVAIGNKLIVYGGDCGDRYHGDIDILDMDTLTWSRLSVQGSSPGVRAGHAAVSIG 240
Query: 241 TK--------------VYIIGGVGDKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAA 286
TK VYIIGGVGDKHYYND+W+L+V TC W+QL+ GQQPQGRFSH A
Sbjct: 241 TKASQTLGKKNQVFDEVYIIGGVGDKHYYNDVWVLDVITCLWNQLEIRGQQPQGRFSHTA 300
Query: 287 VVTGSDIVIYGGCGEDERPLNELLVLQLGAEHPNYRYNISMCKIFGNHWNQAKRRFPGGV 346
+VT SDI IYGGCGEDERPLNELLVLQLG+EHPN RYNIS+CKIFGNHW+ KRRF
Sbjct: 301 IVTDSDIAIYGGCGEDERPLNELLVLQLGSEHPNGRYNISLCKIFGNHWSHGKRRFHREA 360
Query: 347 ENNSKTIFPGNNE--VKKGAHETELEAKQTFPLSSDTLQSKKRRAFNSTTVWEVESEQEE 404
E+NSKT+ GN+ V+K A E ELE+ ++ SSDTL K+RR N WE ESEQEE
Sbjct: 361 ESNSKTMLFGNDAEVVRKDACEPELESNRSVRFSSDTLHPKRRRTGNLKG-WEFESEQEE 419
Query: 405 HSLSLSQHSSPSQSDHEQTPVPKVSE-SLAGSQGFYLFNKQVNQIPKCFQPRNVASNQRE 463
HSLSLSQ SSPSQSD EQTP+ K ++ S+A S G LF + N Q NV+S Q+E
Sbjct: 420 HSLSLSQSSSPSQSDQEQTPIGKATDSSIAASLGVPLFRQPSNS-----QANNVSSKQKE 474
Query: 464 FRNLIQRTPEDHQFSREHQNHKKPEQCP-HSVHTGGPATQHPADLQSMEAGPIQNLIGAE 522
R++ Q + D F E QN +KPE + P Q P D LIGAE
Sbjct: 475 PRSVDQSSRHDICFLGERQNQQKPENFQRQQLQYHQPPEQKPLD-----------LIGAE 523
Query: 523 VQGKVDGAFDSGFLMTATINGRIFRGVLFPPGPGIVSRGSPFTQ-APSPPSHMALAQSFP 581
++GKVDGAFDSG+LMTAT+NG+IFRGVLF PGP +VSRG Q A SP +H+A+ + P
Sbjct: 524 IRGKVDGAFDSGYLMTATVNGQIFRGVLFSPGPAMVSRGIVLGQSASSPMAHVAVTRPCP 583
Query: 582 NSNHIE--RFKPSQQPVGFSTPKSVRNHQQTQVSRQFPICRSTSPLAEQPKQRSDLQG 637
H E FKPSQQ + F P+S + ++QT ++R P+ RS +P PK R+DL G
Sbjct: 584 KLIHAEPSLFKPSQQAIAFPVPESGQAYRQTVIARPSPVVRSITP--AHPKLRTDLPG 639
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255542910|ref|XP_002512518.1| kelch repeat protein, putative [Ricinus communis] gi|223548479|gb|EEF49970.1| kelch repeat protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 795 bits (2052), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/652 (63%), Positives = 490/652 (75%), Gaps = 45/652 (6%)
Query: 1 MSSLG-GENAKRAAMWLYPKVLGFNPPERWGHSACYSHGAVYIFGGCCGGLHFGDVLMLN 59
M SLG E + + AMW YPKVLGF+P ERWGHSACYSHG VY+FGGCCGGLHF DVLMLN
Sbjct: 1 MGSLGVHETSNKKAMWFYPKVLGFHPSERWGHSACYSHGLVYVFGGCCGGLHFSDVLMLN 60
Query: 60 LDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPE 119
LDTM W+TLAT GQGPGPRDSHSA+L G +M VFGGTNG KKVNDLHILDL +KEW++PE
Sbjct: 61 LDTMSWNTLATIGQGPGPRDSHSAVLVGRQMFVFGGTNGSKKVNDLHILDLVTKEWIQPE 120
Query: 120 CRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPV 179
C+G PP PRESHTATL+GDD+++IFGGSGEGEANYLNDLHVLDLKTMRW+SP VKGDIPV
Sbjct: 121 CKGTPPCPRESHTATLIGDDRILIFGGSGEGEANYLNDLHVLDLKTMRWSSPEVKGDIPV 180
Query: 180 PRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINI 239
PRDSH + I N LFVYGGD GD+YHG++D+LD +++TWS+L + GSSPGVRAGHAA+NI
Sbjct: 181 PRDSHGAVAIGNDLFVYGGDRGDRYHGNVDVLDTDTMTWSKLVVQGSSPGVRAGHAAVNI 240
Query: 240 GTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVTGSDIVIYGGC 299
G KVY+IGGVGDKHYYND+W+L+V CSW+QLD CGQQPQGRFSH AVVT SDI IYGGC
Sbjct: 241 GNKVYVIGGVGDKHYYNDVWVLDVVACSWTQLDICGQQPQGRFSHTAVVTDSDIAIYGGC 300
Query: 300 GEDERPLNELLVLQLGAEHPNYRYNISMCKIFGNHWNQAKRRFPGGVENNSKTIFPGNNE 359
GEDE PLNELL+LQLGAEHP+ Y I +CKIFG HWNQ KRR P EN+S P
Sbjct: 301 GEDEHPLNELLILQLGAEHPDAPYRIPICKIFGKHWNQEKRRSPQA-ENDSVIELPSK-- 357
Query: 360 VKKGAHETELEAKQTFPLSSDTLQSKKRRAFNSTTVWEVESEQEEHSLSLSQHSSPSQSD 419
+ T+ S++ K++R NS + WEVESEQEEHSLSLSQHSSPSQSD
Sbjct: 358 -----YRTQSLFIYLLFQDSNSPYPKRKRTTNSKS-WEVESEQEEHSLSLSQHSSPSQSD 411
Query: 420 HEQTPVPKVSESLAGSQGFYLFNKQVNQIPKCFQPRNVASNQREFRNLIQRTPEDHQFSR 479
EQTPV K ++S+ SQGF LF KQ+N+ P+ Q +VAS Q+E N IQ++P + Q R
Sbjct: 412 QEQTPVRKATDSITASQGFNLF-KQLNRSPRNCQTIDVASYQKEPGNTIQKSPYNLQILR 470
Query: 480 EHQNHKKPEQCPHSVHTGGPATQHPADLQSMEAGPIQNLIGAEVQGKVDGAFDSGFLMTA 539
E H KPEQC IGAEV+G+VDGAFDSG LMTA
Sbjct: 471 E---HTKPEQC----------------------------IGAEVRGRVDGAFDSGLLMTA 499
Query: 540 TINGRIFRGVLFPPGPGIVSRGSPFTQAPSPPS-HMALAQSFPNSNHIERFKPSQQPVGF 598
T+NG+IFRGVLF P +VSRG+ Q PS P+ H+ A SFPNSNH+E K +QP F
Sbjct: 500 TVNGKIFRGVLFAPVSEVVSRGAILAQNPSTPANHIVNAHSFPNSNHMESLKICRQPSTF 559
Query: 599 STPKSVRNHQQTQV--SRQFPICRSTSPLAEQPKQRSDLQGVVLTLGGPRTG 648
P+S ++ +QTQ+ +R +P+ R+T LA++P+ R+DLQGVVLTLGGP +G
Sbjct: 560 PMPESGQSFRQTQMNTTRSYPLVRATPSLAKEPRLRNDLQGVVLTLGGPGSG 611
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449517790|ref|XP_004165927.1| PREDICTED: LOW QUALITY PROTEIN: rab9 effector protein with kelch motifs-like, partial [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 742 bits (1915), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/651 (60%), Positives = 472/651 (72%), Gaps = 50/651 (7%)
Query: 5 GGENAKRAAMWLYPKVLGFNPPERWGHSACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMV 64
GGE +K+ AMWLYPKV+GF P ERWGHSACY G VY+FGGCCGGLHF DVL+LNLDTMV
Sbjct: 1 GGETSKKKAMWLYPKVMGFTPSERWGHSACYYQGNVYVFGGCCGGLHFSDVLVLNLDTMV 60
Query: 65 WSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAP 124
W+ + TTGQGPGPRDSH A++ G++MIVFGGTNG KKVNDLHILDL +KEW++PEC+G P
Sbjct: 61 WTNMVTTGQGPGPRDSHGALIVGNQMIVFGGTNGSKKVNDLHILDLGTKEWVQPECKGNP 120
Query: 125 PSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSH 184
PSPRESHTATLVGDDK+VIFGGSGEGE+NYLNDLH+LDLK+M W + V+GDIPVPRDSH
Sbjct: 121 PSPRESHTATLVGDDKLVIFGGSGEGESNYLNDLHILDLKSMVWMNIEVRGDIPVPRDSH 180
Query: 185 SSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVY 244
S+ + ++LFVYGGDCGD+Y G +DMLD++SLTWS+L++ GSSPGVRAGHAA+NI TKVY
Sbjct: 181 SATAVGHKLFVYGGDCGDRYQGGVDMLDVHSLTWSKLSVQGSSPGVRAGHAAVNIATKVY 240
Query: 245 IIGGVGDKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVTGSDIVIYGGCGEDER 304
I+GGVGD+ YYND W+L++ TCSW+QLDTCGQQPQGRFSH AVV SDI IYGGCGEDER
Sbjct: 241 ILGGVGDRQYYNDAWVLDLCTCSWTQLDTCGQQPQGRFSHTAVVADSDIAIYGGCGEDER 300
Query: 305 PLNELLVLQLGAEHPNYRYNISMCKIFGNHWNQAKRRFPGGVENNSKTIFPGNNEVKKGA 364
PLN+LLVLQLGAEHPN RYN+SMCKIFG HWN R E+ S +F + K
Sbjct: 301 PLNDLLVLQLGAEHPNGRYNVSMCKIFGKHWNNQTRS--SLREDQSSVLF---FLIMKCT 355
Query: 365 HETELEAKQTFPLSSDTLQSKKRRAFNSTTVWEVESEQEEHSLSLSQHSSPSQSDHEQTP 424
FP +TL K+RR N VWEVESEQEEHSLSLSQHSSPSQSD EQTP
Sbjct: 356 XTIYFSL--CFP---ETLHPKRRRTMNPK-VWEVESEQEEHSLSLSQHSSPSQSDQEQTP 409
Query: 425 VPKVSESLAGSQGFYLFNKQVNQIPKCFQPRNVASNQREFRNLIQRTPEDHQFSREHQNH 484
V KVS+S+ SQG L K+VN +P +++ Q EFRN++Q P+ HQN
Sbjct: 410 VRKVSDSVTSSQGLRLL-KRVNH-SSTSEPYSISRTQPEFRNVVQTAPQQDLSYFGHQNL 467
Query: 485 KKPEQCPHSVHTGGPATQHPADLQSMEAGPIQNL--IGAEVQGKVDGAFDSGFLMTATIN 542
K EQ Q L IG+EV+G+VDGAFDSGFLMTAT+N
Sbjct: 468 LKTEQ--------------------------QQLLHIGSEVRGRVDGAFDSGFLMTATVN 501
Query: 543 GRIFRGVLFPP--GPGIVSRGSPFTQAPSPPSHMALAQSFPNSNHIERFKPSQQPVGFST 600
G+++RGVLF P GPG+ SR S T++P P++ + PNSNHIER K QQ
Sbjct: 502 GKVYRGVLFTPVSGPGVFSRASIVTESPPLPTN-----TVPNSNHIERSKSLQQRPSVVV 556
Query: 601 PKSVRNHQQTQVS-RQFPICRSTSPLAEQPKQRSDLQGVVLTLGGPRTGGS 650
P+S + +Q Q+S PI + T P + K R DLQGV LTLGGP G +
Sbjct: 557 PESGQXFRQAQLSPPPVPIIKPT-PSSLPVKLRDDLQGVFLTLGGPGNGSA 606
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224122912|ref|XP_002318947.1| predicted protein [Populus trichocarpa] gi|222857323|gb|EEE94870.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 734 bits (1895), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/544 (68%), Positives = 438/544 (80%), Gaps = 19/544 (3%)
Query: 14 MWLYPKVLGFNPPERWGHSACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQ 73
MWLYPKVLGFNP ERWGHSACYSHG VY+FGGCCGGL F DVLMLNLDTM+W+T+ATTGQ
Sbjct: 1 MWLYPKVLGFNPSERWGHSACYSHGIVYVFGGCCGGLDFSDVLMLNLDTMLWNTMATTGQ 60
Query: 74 GPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTA 133
GPGPRDSHSA+L G +MIVFGGTNG KKVNDLH+LDL +KEWM PEC+G PPSPRESHTA
Sbjct: 61 GPGPRDSHSAVLVGRQMIVFGGTNGSKKVNDLHVLDLGTKEWMSPECKGNPPSPRESHTA 120
Query: 134 TLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRL 193
TL+GDDK++IFGGSGEGEANYLNDLHVLDLK+MRW SP VKG IP RDSHS+ I ++L
Sbjct: 121 TLIGDDKIMIFGGSGEGEANYLNDLHVLDLKSMRWTSPEVKGSIPAARDSHSAVAIGSKL 180
Query: 194 FVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTK---VYIIGGVG 250
FVYGGD GD++HGD+D+LD +++TW++LA+ GS+PGVRAGH A+NIGTK VY+IGGVG
Sbjct: 181 FVYGGDRGDRFHGDVDVLDTDTMTWTKLAVQGSAPGVRAGHTAVNIGTKAINVYVIGGVG 240
Query: 251 DKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVTGSDIVIYGGCGEDERPLNELL 310
DKHYYND+W+L+VS CSW++LD GQQPQGRFSH AVVT +I IYGGC EDERPLN+LL
Sbjct: 241 DKHYYNDVWVLDVSACSWTKLDISGQQPQGRFSHTAVVTDLNIAIYGGCREDERPLNQLL 300
Query: 311 VLQLGAEHPNYRYNISMCKIFGNHWNQAKRRFPGGVENNSKTIFPGNNE-VKKGAHETEL 369
VLQL AEHPN RYNISMCKIFGNHWNQ KRRF G NNS+T+FPGNNE V KG+ E+E
Sbjct: 301 VLQLEAEHPNGRYNISMCKIFGNHWNQEKRRFLRGAANNSQTMFPGNNEIVGKGSQESE- 359
Query: 370 EAKQTFPLSSDTLQSKKRRAFNSTTVWEVESEQEEHSLSLSQHSSPSQSDHEQTPVPKVS 429
E+KQ F SSDTL K+R N WE++SEQEEHSLSLSQHSSPSQSD EQ PV +
Sbjct: 360 ESKQPFQFSSDTLHPTKKRTTN-LKAWEIDSEQEEHSLSLSQHSSPSQSDQEQFPVHRSV 418
Query: 430 ESLAGSQGFYLFNKQVNQIPKCFQPRNVASNQREFRNLIQRTPEDHQFSREHQNHKKPEQ 489
+SL QG F +Q+N+IP+ + +VASNQ++ +++RTP Q SRE +K+ EQ
Sbjct: 419 DSLTSCQGLNFF-RQLNKIPRNCRADDVASNQKQPITIVERTPYSLQISRE---NKRAEQ 474
Query: 490 CPHSVHTGGPATQHPADLQSMEAGPIQNLIGAEVQGKVDGAFDSGFLMTATINGRIFRGV 549
H+ G T P ME P +GAEV+GKVDGAFDSG LMTAT+NG+IFRGV
Sbjct: 475 YVHA-GLGRQGTPFPP----MEHRP----VGAEVRGKVDGAFDSGLLMTATVNGKIFRGV 525
Query: 550 LFPP 553
LF P
Sbjct: 526 LFAP 529
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449454133|ref|XP_004144810.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101218863 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/615 (59%), Positives = 443/615 (72%), Gaps = 50/615 (8%)
Query: 41 YIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYK 100
++F GCCGGLHF DVL+LNLDTMVW+ + TTGQGPGPRDSH A++ G++MIVFGGTNG K
Sbjct: 16 FVFSGCCGGLHFSDVLVLNLDTMVWTNMVTTGQGPGPRDSHGALIVGNQMIVFGGTNGSK 75
Query: 101 KVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHV 160
KVNDLHILDL +KEW++PEC+G PPSPRESHTATLVGDDK+VIFGGSGEGE+NYLNDLH+
Sbjct: 76 KVNDLHILDLGTKEWVQPECKGNPPSPRESHTATLVGDDKLVIFGGSGEGESNYLNDLHI 135
Query: 161 LDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSR 220
LDLK+M W + V+GDIPVPRDSHS+ + ++LFVYGGDCGD+Y G +DMLD++SLTWS+
Sbjct: 136 LDLKSMVWMNIEVRGDIPVPRDSHSATAVGHKLFVYGGDCGDRYQGGVDMLDVHSLTWSK 195
Query: 221 LAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLDTCGQQPQG 280
L++ GSSPGVRAGHAA+NI TKVYI+GGVGD+ YYND W+L++ TCSW+QLDTCGQQPQG
Sbjct: 196 LSVQGSSPGVRAGHAAVNIATKVYILGGVGDRQYYNDAWVLDLCTCSWTQLDTCGQQPQG 255
Query: 281 RFSHAAVVTGSDIVIYGGCGEDERPLNELLVLQLGAEHPNYRYNISMCKIFGNHWNQAKR 340
RFSH AVV SDI IYGGCGEDERPLN+LLVLQLGAEHPN RYN+SMCKIFG HWN R
Sbjct: 256 RFSHTAVVADSDIAIYGGCGEDERPLNDLLVLQLGAEHPNGRYNVSMCKIFGKHWNNQTR 315
Query: 341 RFPGGVENNSKTIFPGNNEVKKGAHETELEAKQTFPLSSDTLQSKKRRAFNSTTVWEVES 400
E+ S +F + K FP +TL K+RR N VWEVES
Sbjct: 316 S--SLREDQSSVLF---FLIMKCTXTIYFSL--CFP---ETLHPKRRRTMNPK-VWEVES 364
Query: 401 EQEEHSLSLSQHSSPSQSDHEQTPVPKVSESLAGSQGFYLFNKQVNQIPKCFQPRNVASN 460
EQEEHSLSLSQHSSPSQSD EQTPV KVS+S+ SQG L K+VN +P +++
Sbjct: 365 EQEEHSLSLSQHSSPSQSDQEQTPVRKVSDSVTSSQGLRLL-KRVNH-SSTSEPYSISRT 422
Query: 461 QREFRNLIQRTPEDHQFSREHQNHKKPEQCPHSVHTGGPATQHPADLQSMEAGPIQNL-- 518
Q EFRN++Q P+ HQN K EQ Q L
Sbjct: 423 QPEFRNVVQTAPQQDLSYFGHQNLLKTEQ--------------------------QQLLH 456
Query: 519 IGAEVQGKVDGAFDSGFLMTATINGRIFRGVLFPP--GPGIVSRGSPFTQAPSPPSHMAL 576
IG+EV+G+VDGAFDSGFLMTAT+NG+++RGVLF P GPG+ SR S T++P P++
Sbjct: 457 IGSEVRGRVDGAFDSGFLMTATVNGKVYRGVLFTPVSGPGVFSRASIVTESPPLPTN--- 513
Query: 577 AQSFPNSNHIERFKPSQQPVGFSTPKSVRNHQQTQVS-RQFPICRSTSPLAEQPKQRSDL 635
+ PNSNHIER K QQ P+S ++ +Q Q+S PI + T P + K R DL
Sbjct: 514 --TVPNSNHIERSKSLQQRPSVVVPESGQSFRQAQLSPPPVPIIKPT-PSSLPVKLRDDL 570
Query: 636 QGVVLTLGGPRTGGS 650
QGV LTLGGP G +
Sbjct: 571 QGVFLTLGGPGNGSA 585
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242052729|ref|XP_002455510.1| hypothetical protein SORBIDRAFT_03g012440 [Sorghum bicolor] gi|241927485|gb|EES00630.1| hypothetical protein SORBIDRAFT_03g012440 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 629 bits (1622), Expect = e-177, Method: Compositional matrix adjust.
Identities = 343/651 (52%), Positives = 436/651 (66%), Gaps = 54/651 (8%)
Query: 10 KRAAMWLYPKVLGFNPPERWGHSACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLA 69
+R AMWLYPKV+GFNPPERWGHSAC+ G VY+FGGCCGGLHF DVL LN++TM WS+LA
Sbjct: 4 RRKAMWLYPKVVGFNPPERWGHSACFFEGVVYVFGGCCGGLHFSDVLTLNVETMAWSSLA 63
Query: 70 TTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRE 129
TTGQ PG RDSH A L GH+M+VFGGTNG KKVNDLH+LDL ++EW RP+C+GAPPSPRE
Sbjct: 64 TTGQRPGTRDSHGAALVGHRMLVFGGTNGGKKVNDLHVLDLRTREWTRPQCKGAPPSPRE 123
Query: 130 SHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI 189
SHT T+VG D++V+FGGSGEGE NYL+D+HVLD+ TM W++P VK P PRDSHS+ +
Sbjct: 124 SHTVTVVGGDRLVVFGGSGEGEGNYLSDVHVLDVPTMTWSTPEVKAP-PAPRDSHSAVAV 182
Query: 190 ANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGV 249
+RLFV+GGDCGD+YHG++D+LD++++TWSR + G+SPGVRAGHAA+++G+KVYIIGGV
Sbjct: 183 GSRLFVFGGDCGDRYHGEVDVLDVDTMTWSRFPVKGASPGVRAGHAAMSVGSKVYIIGGV 242
Query: 250 GDKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVTGSDIVIYGGCGEDERPLNEL 309
GDK YY+D+W+L+V+ SWSQL+ CGQQPQGRFSH AVV +DI +YGGCGEDERPLNEL
Sbjct: 243 GDKQYYSDVWVLDVTNRSWSQLEVCGQQPQGRFSHTAVVMNTDIAVYGGCGEDERPLNEL 302
Query: 310 LVLQLGAEHPNYRYNISMCKIFGNHWNQAKRRFPGGVENNSKTIFPGNNEVKKGAHETEL 369
L+LQLG+EHPN RYNISMCK+ NHW+Q KR+F + + +K N ++ + E E+
Sbjct: 303 LILQLGSEHPNGRYNISMCKVLSNHWSQEKRKF---LRSETKDASVSNGKMVQKPREAEI 359
Query: 370 EAKQTFPLSSDTLQSKKRRAFNSTTVWEVESEQEEHSLSLSQHSSPSQSDHEQTPVPKVS 429
E + F + ++K+R+ E ESEQEEHSLSLSQHSSPSQSD EQ K+S
Sbjct: 360 EQRNPFLRGLENGRAKRRKT-GEVRPNEPESEQEEHSLSLSQHSSPSQSDQEQNGAHKLS 418
Query: 430 E----SLAGSQGFYLFNKQVNQIPKCFQPRNVASNQREFRNLIQRTPEDHQFSRE-HQNH 484
S++ Q F + N + P ++S R + QF R H
Sbjct: 419 ASPNTSISALQPFVRL--KANGTLRAPGPGGISS----------RPLKTDQFLRTIAPQH 466
Query: 485 KKPEQCPHSVHTGGPATQHPADLQSMEAGPIQNLIGAEVQGKVDGAFDSGFLMTATINGR 544
++ Q S H + P LIGAEV G VDGAFDSG+LMTA +NG+
Sbjct: 467 RQEVQFLSSDH------------KPQPRPPGPPLIGAEVHGTVDGAFDSGYLMTAVVNGQ 514
Query: 545 IFRGVLFPPGPGIVS-----RGSPFTQAPSPPSHM--ALAQSFPNSNHIERFKPSQQPVG 597
+FRGVLF PGPG+ + T + PP LA + P +P Q G
Sbjct: 515 LFRGVLFAPGPGVTAPRPTVHHQILTSSAVPPQQQRPLLAHAIPVHT-----RPVPQATG 569
Query: 598 FSTPKSVRNHQQTQVSRQFPICRSTSPLAEQPKQRSDLQGVVLTLGGPRTG 648
F P + +Q FP + + +E + SDL VVLTLGGP G
Sbjct: 570 FVLPDCAHHARQG-----FP---AKAVKSEPERGSSDLHDVVLTLGGPGGG 612
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115436122|ref|NP_001042819.1| Os01g0300900 [Oryza sativa Japonica Group] gi|14495224|dbj|BAB60943.1| putative p40 [Oryza sativa Japonica Group] gi|113532350|dbj|BAF04733.1| Os01g0300900 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 627 bits (1616), Expect = e-177, Method: Compositional matrix adjust.
Identities = 345/659 (52%), Positives = 428/659 (64%), Gaps = 59/659 (8%)
Query: 10 KRAAMWLYPKVLGFNPPERWGHSACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLA 69
+R AMWLYPKV+GFNPPERWGHSAC+ G VY+FGGCCGGLHF DVL LNL+TM WS+LA
Sbjct: 4 RRKAMWLYPKVVGFNPPERWGHSACFFEGVVYVFGGCCGGLHFSDVLTLNLETMAWSSLA 63
Query: 70 TTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRE 129
TTG PG RDSH A L GH+M+VFGGTNG KKVNDLH+LDL +KEW +P C+G PPSPRE
Sbjct: 64 TTGARPGTRDSHGAALVGHRMMVFGGTNGSKKVNDLHVLDLRTKEWTKPPCKGTPPSPRE 123
Query: 130 SHTATLVGD-DKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDI-PVPRDSHSSN 187
SHT T G D++V+FGGSGEGE NYLND+HVLD+ TM W+SP VKGD+ P PRDSH +
Sbjct: 124 SHTVTACGGCDRLVVFGGSGEGEGNYLNDVHVLDVATMTWSSPEVKGDVVPAPRDSHGAV 183
Query: 188 VIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIG 247
+ +RL VYGGDCGD+YHG++D+LDM+++ WSR A+ G+SPGVRAGHAA+ +G+KVY+IG
Sbjct: 184 AVGSRLVVYGGDCGDRYHGEVDVLDMDAMAWSRFAVKGASPGVRAGHAAVGVGSKVYVIG 243
Query: 248 GVGDKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVTGSDIVIYGGCGEDERPLN 307
GVGDK YY+D WIL+V+ SW+QL+ CGQQPQGRFSH+AVV +DI IYGGCGEDERPLN
Sbjct: 244 GVGDKQYYSDAWILDVANRSWTQLEICGQQPQGRFSHSAVVLNTDIAIYGGCGEDERPLN 303
Query: 308 ELLVLQLGAEHPNYRYNISMCKIFGNHWNQAKRRFPGGVENNSKTIFPGNNEVKKGAHET 367
ELL+LQLG+EHPN RYNISMCK+ NHW+Q +R+F N + N E+ + E
Sbjct: 304 ELLILQLGSEHPNGRYNISMCKVLSNHWSQERRKFL--RTENQRDPNMSNGELGPRSREA 361
Query: 368 ELEAKQTFPLSSDTLQSKKRRAFNSTTVWEVESEQEEHSLSLSQHSSPSQSDHEQTPVPK 427
E+E + F + K+RR + E ESEQEEHSLSLSQHSSPSQSD EQ K
Sbjct: 362 EIEQRNPFLRGLENGHVKRRRT-GDVRLKETESEQEEHSLSLSQHSSPSQSDQEQNGAQK 420
Query: 428 VSESLAGS----QGFYLFNKQ-VNQIPKCFQPRNVASNQREFRNLIQRTPEDHQF-SREH 481
+S S GS Q F N + PR + ++Q R + + + QF + E
Sbjct: 421 LSASPNGSISALQPFVHLNTNGTLRAAGGVSPRTLKTDQF-LRTIAPQQRHEVQFLAAEP 479
Query: 482 QNHKKPEQCPHSVHTGGPATQHPADLQSMEAGPIQNLIGAEVQGKVDGAFDSGFLMTATI 541
+ H +P P LIGAEV G +DGAFDSG+LMTA +
Sbjct: 480 KLHHRP--------------------------PTPPLIGAEVHGTIDGAFDSGYLMTAVV 513
Query: 542 NGRIFRGVLFPPGPGIVSRGSPFTQAPSPPSH--MALAQSFPNSNHIER----------F 589
NG++FRGVLF PGPG+ AP P H + ++ + P +R
Sbjct: 514 NGQLFRGVLFAPGPGVT--------APRPTLHHPILMSSAIPPQQQQQRPVLAHAIPVHA 565
Query: 590 KPSQQPVGFSTPKSVRNHQQTQVSRQFPICRSTSPLAEQPKQRSDLQGVVLTLGGPRTG 648
+P Q GF P NH + + +E + SDL VVLTLGGP G
Sbjct: 566 RPVPQATGFVLP-DCSNHARQAFPASAAAAAAKIIKSEPERGGSDLHDVVLTLGGPGAG 623
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|293334253|ref|NP_001170647.1| uncharacterized protein LOC100384701 [Zea mays] gi|238006618|gb|ACR34344.1| unknown [Zea mays] gi|413947978|gb|AFW80627.1| hypothetical protein ZEAMMB73_821757 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 621 bits (1601), Expect = e-175, Method: Compositional matrix adjust.
Identities = 326/655 (49%), Positives = 425/655 (64%), Gaps = 50/655 (7%)
Query: 10 KRAAMWLYPKVLGFNPPERWGHSACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLA 69
+R AMWLYPKV+GFNPPERWGHSAC+ G VY+FGGCCGGLHF DV+ L+++TM WS LA
Sbjct: 4 QRKAMWLYPKVVGFNPPERWGHSACFFEGVVYVFGGCCGGLHFSDVVTLDVETMAWSALA 63
Query: 70 TTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRE 129
TTGQ PG RDSH A L GH+M+VFGGTNG KKVN+LH+LDL ++EW RP+CRGA PSPRE
Sbjct: 64 TTGQRPGTRDSHGAALVGHRMLVFGGTNGGKKVNELHVLDLRTREWSRPQCRGAAPSPRE 123
Query: 130 SHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASP-AVKGDIPVPRDSHSSNV 188
SH+ T+VG D++V+FGGSGEGE NYL+D+HVLD+ TM W++P A++G P PRDSHS+
Sbjct: 124 SHSVTVVGGDRLVVFGGSGEGEGNYLSDVHVLDVPTMTWSTPEAIRGGAPAPRDSHSAVA 183
Query: 189 IANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGG 248
+ RLFV+GGDCGD+YHG +D+LD++++ WSR + G+SPGVRAGHAA+++G+K+YIIGG
Sbjct: 184 VGARLFVFGGDCGDRYHGGVDVLDVDTMAWSRFPVKGASPGVRAGHAALSVGSKIYIIGG 243
Query: 249 VGDKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVTGSDIVIYGGCGEDERPLNE 308
VGDK YY+D+W+L+V+ SWSQL+ GQ+PQGRFSH AVV +DI IYGGCGEDERPLNE
Sbjct: 244 VGDKQYYSDVWVLDVANRSWSQLEVSGQRPQGRFSHTAVVMNNDIAIYGGCGEDERPLNE 303
Query: 309 LLVLQLGAEHPNYRYNISMCKIFGNHWNQAKRRFPGGVENNSKTIFPGNNEVKKGAHETE 368
LL+LQLG+EHPN RYNIS CK+ N W+Q +R+F +++ +K N E + E E
Sbjct: 304 LLILQLGSEHPNGRYNISTCKVLSNQWSQERRKF---LQSETKDTGASNGETVQKRREAE 360
Query: 369 LEAKQTFPLSSDTLQSKKRRAFNST-TVWEVESEQEEHSLSLSQHSSPSQSDHEQTP--- 424
+E + F + ++K+R+ + + +QEEHSL+LSQHSSPSQSD EQ
Sbjct: 361 IEQRNPFLRGLENSRAKRRKTDEARPSEAAESEQQEEHSLTLSQHSSPSQSDQEQNGGGA 420
Query: 425 ---VPKVSESLAGSQGFYLFNKQVNQIPKCFQPRNVASNQREFRNLIQRTPEDHQFSR-- 479
P + S++ Q F + S++ + QF R
Sbjct: 421 HKLSPSPNASVSALQPFARLKANDGAPSAPGRGGGGVSSRPALKT--------DQFLRTV 472
Query: 480 EHQNHKKPEQCPHSVHTGGPATQHPADLQSMEAGPIQNLIGAEVQGKVDGAFDSGFLMTA 539
Q+H++ Q S H P LIGAEV G +DGAFDSG+LMTA
Sbjct: 473 APQHHRQEVQFLSSDH----------KKPQPRPAPGPPLIGAEVHGTIDGAFDSGYLMTA 522
Query: 540 TINGRIFRGVLFPPGPGIVS-----RGSPFTQAPSPPSHM-ALAQSFPNSNHIERFKPSQ 593
+NG++FRGVLF PGPG+ + T + PP LA + P +P
Sbjct: 523 VVNGQLFRGVLFAPGPGVTAPRPTVHHQILTSSAMPPQQRPLLAHAIP-----VHARPVP 577
Query: 594 QPVGFSTPKSVRNHQQTQVSRQFPICRSTSPLAEQPKQRSDLQGVVLTLGGPRTG 648
Q GF P V +Q FP + + +E + SDL VVLTLGGP G
Sbjct: 578 QATGFVLPNCVHRARQG-----FP---AKAVKSEPERGGSDLHDVVLTLGGPGGG 624
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 650 | ||||||
| DICTYBASE|DDB_G0270750 | 485 | DDB_G0270750 "Kelch repeat-con | 0.432 | 0.579 | 0.365 | 2e-45 | |
| UNIPROTKB|F1SKQ3 | 370 | RABEPK "Uncharacterized protei | 0.423 | 0.743 | 0.327 | 2.5e-38 | |
| RGD|1310612 | 372 | Rabepk "Rab9 effector protein | 0.429 | 0.75 | 0.328 | 7.2e-38 | |
| UNIPROTKB|Q5EA50 | 372 | RABEPK "Rab9 effector protein | 0.423 | 0.739 | 0.317 | 1.6e-37 | |
| MGI|MGI:2139530 | 380 | Rabepk "Rab9 effector protein | 0.487 | 0.834 | 0.309 | 1.6e-36 | |
| TAIR|locus:2143676 | 648 | ACBP5 "acyl-CoA binding protei | 0.475 | 0.476 | 0.326 | 6.1e-35 | |
| UNIPROTKB|Q7Z6M1 | 372 | RABEPK "Rab9 effector protein | 0.423 | 0.739 | 0.313 | 1.7e-34 | |
| POMBASE|SPCC1223.06 | 1147 | tea1 "cell end marker Tea1" [S | 0.436 | 0.247 | 0.314 | 1.1e-30 | |
| DICTYBASE|DDB_G0268860 | 943 | rngB "Kelch repeat-containing | 0.42 | 0.289 | 0.315 | 9.6e-30 | |
| UNIPROTKB|A5GFR1 | 410 | KLHDC3 "Uncharacterized protei | 0.418 | 0.663 | 0.295 | 9e-29 |
| DICTYBASE|DDB_G0270750 DDB_G0270750 "Kelch repeat-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 445 (161.7 bits), Expect = 2.0e-45, Sum P(2) = 2.0e-45
Identities = 105/287 (36%), Positives = 142/287 (49%)
Query: 22 GFNPPERWGHSACYSHGAVYIFGGCCGGLH-FGDVLMLNLDTMVWSTLATTGQGPGPRDS 80
GF P ER GH+ C V +FGG G H D+ L LDT W + T G P R
Sbjct: 113 GFFPVERHGHTTCLYKNKVILFGGTPDGSHGLSDLYFLYLDTYSWVEIKTKGNAPNGRYR 172
Query: 81 HSAILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDK 140
HSAI+ KM +FGG K +NDLH+LDLE+ W P C G PS R SH+ VG
Sbjct: 173 HSAIIIEDKMYIFGGYRS-KCLNDLHVLDLETFTWSEPICIGEAPSARSSHSVCCVGK-M 230
Query: 141 MVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDC 200
M++FGGSG A Y N+L LD TMRW V G P R H+ ++ +GG
Sbjct: 231 MILFGGSG---ARYSNELFSLDTVTMRWTKHDVLGTPPSERWCHTMCSFGKKVVTFGGSN 287
Query: 201 GDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWI 260
+ + +LD +++ WS+ G+ P R H A+ IG + + GG G ND++I
Sbjct: 288 DKRKDNKVYILDTDTMEWSQPPTSGNCPIPRQLHTAVAIGESMIVFGGWGKHQELNDLYI 347
Query: 261 LNVSTCSWSQLDTCGQQPQGRFSHAAVVTGSDIVIYGGCGEDERPLN 307
LN T W P R H+A V + GG +++R ++
Sbjct: 348 LNTRTMKWVCPKIDNVIPCCRQLHSAWVYNGKMYTLGGYFKNKRMID 394
|
|
| UNIPROTKB|F1SKQ3 RABEPK "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 413 (150.4 bits), Expect = 2.5e-38, P = 2.5e-38
Identities = 95/290 (32%), Positives = 144/290 (49%)
Query: 11 RAAMWLYPKVLGFNPPERWGHSACY-------SHGAVYIFGGCCGGLHFGDVLMLNLDTM 63
R A W G +P R GHS Y G V+I GG F DV ++L T
Sbjct: 14 RKATWYTLTPTGDSPCARVGHSCSYLPPVGDSKRGKVFIVGGANPNRSFSDVHTMDLGTH 73
Query: 64 VWSTLATTGQGPGPRDSHSAILWG---HKMIVFGGTNGYKKVNDLHILDLESKEWMRPEC 120
W TT +G PR H++ + H + VFGG + N L +L+ E++ W PE
Sbjct: 74 QWDL--TTSEGLLPRYEHASFVPSCAPHSIWVFGGADQSGNRNCLQVLNPETRTWTMPEV 131
Query: 121 RGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLND--LHVLDLKTMRWASPAVKGDIP 178
PPSPR HT++ V +++ +FGG GE A + D LHV D T+ W+ P G+ P
Sbjct: 132 TSPPPSPRTFHTSSSVIGNQLYVFGG-GERGAQPVQDVKLHVFDANTLTWSQPETLGEPP 190
Query: 179 VPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAIN 238
PR H +LF++GG GD+++ D+ +D+N + W +L+ G++P A H+A+
Sbjct: 191 SPRHGHVMVAAGTKLFIHGGLAGDKFYDDLHCIDINDMKWQKLSPTGAAPTGCAAHSAVT 250
Query: 239 IGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVV 288
+G VYI GG+ + ++ ++ W+ L P GR HA +
Sbjct: 251 VGKHVYIFGGMTPTGALDTMYQYHIEKQHWTLLKFDSFLPPGRLDHAMCI 300
|
|
| RGD|1310612 Rabepk "Rab9 effector protein with kelch motifs" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 409 (149.0 bits), Expect = 7.2e-38, P = 7.2e-38
Identities = 97/295 (32%), Positives = 143/295 (48%)
Query: 6 GENAKRAAMWLYPKVLGFNPPERWGHSACY-------SHGAVYIFGGCCGGLHFGDVLML 58
G+ ++AA W G P R GHS Y G V+I GG F DV +
Sbjct: 10 GDKPRKAA-WYTLTCPGDKPCPRVGHSCSYFPPVGEAEKGKVFIVGGANPNQSFSDVHTM 68
Query: 59 NLDTMVWSTLATTGQGPGPRDSHSAILWG---HKMIVFGGTNGYKKVNDLHILDLESKEW 115
+L T W T T +G PR H++ L H + VFGG + N L +++ E++ W
Sbjct: 69 DLGTHRWDT--ATREGLLPRYEHASFLPSCSPHSIWVFGGADQSGNRNCLQVMNPEARTW 126
Query: 116 MRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLND--LHVLDLKTMRWASPAV 173
PE G PPSPR HT++ + + +FGG GE A + D LHV D T+ WA P
Sbjct: 127 STPEVTGCPPSPRTFHTSSAAIGNHLYVFGG-GERGAQPVQDVKLHVFDANTLTWAQPET 185
Query: 174 KGDIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAG 233
G P PR H+ +LF++GG GD++ D+ +D+ ++W +L G++P A
Sbjct: 186 HGSPPSPRHGHAMVAAGTKLFIHGGLAGDRFFDDLHCIDIGDMSWQKLGPTGTAPVGCAA 245
Query: 234 HAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVV 288
HAA+ +G VY+ GG+ N ++ + W+ L P GR H+ V
Sbjct: 246 HAAVAVGHHVYVFGGMTATGALNTMYKYHTEKQHWTILQFDTSLPPGRLDHSMCV 300
|
|
| UNIPROTKB|Q5EA50 RABEPK "Rab9 effector protein with kelch motifs" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 406 (148.0 bits), Expect = 1.6e-37, P = 1.6e-37
Identities = 92/290 (31%), Positives = 144/290 (49%)
Query: 11 RAAMWLYPKVLGFNPPERWGHSACY-------SHGAVYIFGGCCGGLHFGDVLMLNLDTM 63
R W ++G +P R GHS Y G V+I GG F DV ++L T
Sbjct: 14 RKETWYTLTLVGDSPCARVGHSCSYLPPVGDAERGKVFIVGGADPNRSFSDVHTIDLGTH 73
Query: 64 VWSTLATTGQGPGPRDSHSAILWG---HKMIVFGGTNGYKKVNDLHILDLESKEWMRPEC 120
W LAT+ +G PR H++ + H + VFGG + N L +L+ +++ W PE
Sbjct: 74 QWD-LATS-EGLLPRYEHTSFIPSCTPHSIWVFGGADQSGNRNCLQVLNPDTRTWTTPEV 131
Query: 121 RGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLND--LHVLDLKTMRWASPAVKGDIP 178
G PPSPR HT++ D++ +FGG GE A + D LHV D T+ W+ P G P
Sbjct: 132 TGPPPSPRTFHTSSAAIGDQLYVFGG-GERGAQPVQDVQLHVFDANTLTWSQPETHGKPP 190
Query: 179 VPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAIN 238
PR H +LF++GG GD ++ D+ +D++ + W +L G++P A H+A+
Sbjct: 191 SPRHGHVMVAAGTKLFIHGGLAGDNFYDDLHCIDISDMKWQKLRPTGAAPTGCAAHSAVA 250
Query: 239 IGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVV 288
+G +Y+ GG+ N ++ ++ W+ L P GR H+ +
Sbjct: 251 VGKHLYVFGGMTPTGALNTMYQYHIEKQHWTLLKFENSPPTGRLDHSMCI 300
|
|
| MGI|MGI:2139530 Rabepk "Rab9 effector protein with kelch motifs" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 397 (144.8 bits), Expect = 1.6e-36, P = 1.6e-36
Identities = 107/346 (30%), Positives = 155/346 (44%)
Query: 11 RAAMWLYPKVLGFNPPERWGHSACY-------SHGAVYIFGGCCGGLHFGDVLMLNLDTM 63
R A W G P R GHS Y G ++I GG F DV ++L T
Sbjct: 22 RKATWYTLTCPGDRPCPRVGHSCSYFPPVGDAESGKIFIVGGANPNQSFSDVHTMDLGTH 81
Query: 64 VWSTLATTGQGPGPRDSHSAILWG---HKMIVFGGTNGYKKVNDLHILDLESKEWMRPEC 120
W T T +G PR H++ L H + VFGG + N L ++ E + W PE
Sbjct: 82 QWDT--ATREGLLPRYEHASFLPSCSPHSIWVFGGADQSGNRNCLQVMSPEDRTWSTPEV 139
Query: 121 RGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLND--LHVLDLKTMRWASPAVKGDIP 178
G+PPSPR HT++ +++ +FGG GE A + D LHV D T+ W+ P G P
Sbjct: 140 TGSPPSPRTFHTSSAAIGNQLYVFGG-GERGAQPVEDVKLHVFDANTLTWSQPETHGSPP 198
Query: 179 VPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAIN 238
PR H +LF++GG GD++ D+ +D+ ++W +L G+ P A HAA+
Sbjct: 199 SPRHGHVMVAAGTKLFIHGGLAGDKFFDDLHCIDIGDMSWQKLGPTGAVPVGCAAHAAVA 258
Query: 239 IGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVT--------- 289
+G VY+ GG+ N ++ + W+ L P GR H+ V
Sbjct: 259 VGHHVYMFGGMTATGALNMMYKYHTEKQHWTVLQFDTSLPAGRLDHSMCVIPWPVMSTSE 318
Query: 290 --GSDIVIYGGCGEDER-PLNELLVLQLGAEHPNYRYNISMCKIFG 332
SD VI +DE+ E Q G H + +C +FG
Sbjct: 319 NKDSDSVIL--TLQDEKGDAAEKAETQSGGPHEESPTTVLLCFVFG 362
|
|
| TAIR|locus:2143676 ACBP5 "acyl-CoA binding protein 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 401 (146.2 bits), Expect = 6.1e-35, P = 6.1e-35
Identities = 109/334 (32%), Positives = 165/334 (49%)
Query: 15 WLYPKVLGFNPPERWGHSACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLAT---T 71
W P+ G P R+ H A +Y++GG G + GD+ +L+L WS + T T
Sbjct: 172 WTAPRTSGQPPKARYQHGAAVIQDKMYMYGGNHNGRYLGDLHVLDLKNWTWSRVETKVVT 231
Query: 72 G--QGPGPRD-----SHSAILWGHKMIVFGG-TNGYKKVNDLHILDLESKEWMRPECRGA 123
G + P HS I W ++++ GG T + + + DL W + G
Sbjct: 232 GSQETSSPAKLTHCAGHSLIPWDNQLLSIGGHTKDPSESMPVMVFDLHCCSWSILKTYGK 291
Query: 124 PPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDS 183
PP R + TLVG +VIFGG + + + LNDLH+LDL TM W G P PR
Sbjct: 292 PPISRGGQSVTLVGKS-LVIFGGQ-DAKRSLLNDLHILDLDTMTWEEIDAVGSPPTPRSD 349
Query: 184 HSSNVIANR-LFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTK 242
H++ V A R L ++GG D+ +LD+ ++ WSR G +P RAGHA + IG
Sbjct: 350 HAAAVHAERYLLIFGGGSHATCFDDLHVLDLQTMEWSRHTQQGDAPTPRAGHAGVTIGEN 409
Query: 243 VYIIGGVGDKHYYNDIWILNVSTCSWSQLDTCGQQ-PQGRFSHAAVVT---GSDIVIYGG 298
YI+GG +K + +LN+ST +WS + + + P + VV+ G DIV+ G
Sbjct: 410 WYIVGGGDNKSGASKTVVLNMSTLAWSVVTSVQEHVPLASEGLSLVVSSYNGEDIVVAFG 469
Query: 299 CGEDERPLNELLVLQLGAEHPNYRYNISMCKIFG 332
G + NE+ VL+ P+++ ++ KI G
Sbjct: 470 -GYNGHYNNEVNVLK-----PSHKSSLKS-KIMG 496
|
|
| UNIPROTKB|Q7Z6M1 RABEPK "Rab9 effector protein with kelch motifs" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 379 (138.5 bits), Expect = 1.7e-34, P = 1.7e-34
Identities = 91/290 (31%), Positives = 140/290 (48%)
Query: 11 RAAMWLYPKVLGFNPPERWGHSACY-------SHGAVYIFGGCCGGLHFGDVLMLNLDTM 63
R A W V G +P R GHS Y G V+I GG F DV ++L
Sbjct: 14 RKATWYTLTVPGDSPCARVGHSCSYLPPVGNAKRGKVFIVGGANPNRSFSDVHTMDLGKH 73
Query: 64 VWSTLATTGQGPGPRDSHSAILWG---HKMIVFGGTNGYKKVNDLHILDLESKEWMRPEC 120
W T +G PR H++ + ++ VFGG N N L +L+ E++ W PE
Sbjct: 74 QWDL--DTCKGLLPRYEHASFIPSCTPDRIWVFGGANQSGNRNCLQVLNPETRTWTTPEV 131
Query: 121 RGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLND--LHVLDLKTMRWASPAVKGDIP 178
PPSPR HT++ +++ +FGG GE A + D LHV D T+ W+ P G+ P
Sbjct: 132 TSPPPSPRTFHTSSAAIGNQLYVFGG-GERGAQPVQDTKLHVFDANTLTWSQPETLGNPP 190
Query: 179 VPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAIN 238
PR H +LF++GG GD+++ D+ +D++ + W +L G++P A H+A+
Sbjct: 191 SPRHGHVMVAAGTKLFIHGGLAGDRFYDDLHCIDISDMKWQKLNPTGAAPAGCAAHSAVA 250
Query: 239 IGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVV 288
+G VYI GG+ + ++ + W+ L P GR H+ +
Sbjct: 251 MGKHVYIFGGMTPAGALDTMYQYHTEEQHWTLLKFDTLLPPGRLDHSMCI 300
|
|
| POMBASE|SPCC1223.06 tea1 "cell end marker Tea1" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 370 (135.3 bits), Expect = 1.1e-30, P = 1.1e-30
Identities = 95/302 (31%), Positives = 148/302 (49%)
Query: 12 AAMWLYPKVLGF-NPPERWGHSA-CYSHGA--VYIFGGCCGGLH-FGDVLMLNLDTMVWS 66
A+ W V G N R+ H++ Y+ G +YIFGG D+ +LNL T ++
Sbjct: 63 ASPWSKLTVRGSSNVLPRYSHASHLYAEGGQEIYIFGGVASDSQPKNDLWVLNLATSQFT 122
Query: 67 TLATTGQGPGPRDSHSAILWGHKMIVFGGTNGY----KKVNDLHILDLESKEWMRPECRG 122
+L + G+ P PR H++IL G+ IVFGG + ++ N L++L+ S W + G
Sbjct: 123 SLRSLGETPSPRLGHASILIGNAFIVFGGLTNHDVADRQDNSLYLLNTSSLVWQKANASG 182
Query: 123 APPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTM-----RWASPAVKGDI 177
A PS R HT + +G K+ +FGG Y NDL DL + RW +V D
Sbjct: 183 ARPSGRYGHTISCLGS-KICLFGGRLLDY--YFNDLVCFDLNNLNTSDSRWELASVVNDP 239
Query: 178 PVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAI 237
P R H + +++L+++GG G + D+ WS++ G +P RAGHAA
Sbjct: 240 PPARAGHVAFTFSDKLYIFGGTDGANFFNDLWCYHPKQSAWSKVETFGVAPNPRAGHAAS 299
Query: 238 NIGTKVYIIGG-VGDKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVTGSDIVIY 296
+ +Y+ GG D + ND++ +S+ W +L P R SH +G +V+
Sbjct: 300 VVEGILYVFGGRASDGTFLNDLYAFRLSSKHWYKLSDLPFTPSPRSSHTLSCSGLTLVLI 359
Query: 297 GG 298
GG
Sbjct: 360 GG 361
|
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| DICTYBASE|DDB_G0268860 rngB "Kelch repeat-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 363 (132.8 bits), Expect = 9.6e-30, Sum P(2) = 9.6e-30
Identities = 94/298 (31%), Positives = 145/298 (48%)
Query: 24 NPPERWGHSAC-YSHGAVYI-FGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSH 81
+P RWGH+ +G+ +I FGG F D+ N+ WS + G P R H
Sbjct: 13 SPEPRWGHTGTTLPNGSGFIVFGGNSNRA-FNDIQYYNIFNNSWSKIEAVGNAPSERYGH 71
Query: 82 SAILW---------GHKMIVFGGTNGYKKVNDLHILDLESKE---WMRPECRGAPPSPRE 129
SA+L+ +++I FGG K +D++IL + S W + + R
Sbjct: 72 SAVLYQSQSRPYSDSYQIIFFGGRATSKPFSDINILYVNSNRSFIWKQVTTKSI--EGRA 129
Query: 130 SHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSS-NV 188
HTA +V +V+FGG ++ Y N + + L++ W G IP R +HS+ V
Sbjct: 130 GHTA-VVYRQNLVVFGGHNNHKSKYYNSVLLFSLESNEWRQQVCGGVIPSARATHSTFQV 188
Query: 189 IANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINI-GTKVYIIG 247
N++F++GG G +Y+ DI LD+ + W ++ G+ P R+GH+A I K+ I G
Sbjct: 189 NNNKMFIFGGYDGKKYYNDIYYLDLETWIWKKVEAKGTPPKPRSGHSATMIQNNKLMIFG 248
Query: 248 GVG-DKHYYNDIWILNVSTCS---WSQLDTCGQQ-PQGRFSHAAVVTGSDIVIYGGCG 300
G G D ++ NDI IL++ + W Q G + PQ RF H G + IY G G
Sbjct: 249 GCGSDSNFLNDIHILHIEGANEYRWEQPSYLGLEIPQARFRHTTNFIGGRVYIYAGTG 306
|
|
| UNIPROTKB|A5GFR1 KLHDC3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 327 (120.2 bits), Expect = 9.0e-29, P = 9.0e-29
Identities = 88/298 (29%), Positives = 138/298 (46%)
Query: 26 PERWGHSACYSHGAVYIFGGCCGGLHFG-----DVLMLNLDTMVWSTL-----ATTGQGP 75
P R H+A VY FGG C G + DV + N ++ W+ L AT GQ P
Sbjct: 12 PRRVNHAAVAVGHRVYSFGGYCSGEDYETLRQIDVHIFNAVSLRWTKLPPVRPATRGQAP 71
Query: 76 G-P--RDSHSAILWGHKMIVFGGTNGYKKV-NDLHILDLESKEWMRPECRGAPPSPRESH 131
P R HS +L + ++GG N + N L+ D+ + +W P G P R+ H
Sbjct: 72 VVPYMRYGHSTVLIDDTVFLWGGRNDTEGACNVLYAFDVNTHKWSTPRVAGTVPGARDGH 131
Query: 132 TATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIAN 191
+A ++G M IFGG + + ND+H LD TM W KG+ RD HS+ ++ N
Sbjct: 132 SACVLGKT-MYIFGGYEQLADCFSNDIHKLDTSTMTWTLICTKGNPARWRDFHSATMLGN 190
Query: 192 RLFVYGG--DCGDQYHGD-------IDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTK 242
++V+GG D +H + I + D + W P R H+A +
Sbjct: 191 HMYVFGGRADRFGPFHSNNEIYCNRIRVFDTRTEAWLDCPPTPVLPEGRRSHSAFGYNGE 250
Query: 243 VYIIGGVGDK--HYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVTGSDIVIYGG 298
+YI GG + +++D+W N + +W +++ G+ P R + G IV++GG
Sbjct: 251 LYIFGGYNARLNRHFHDLWKFNPVSFTWKKIEPKGKGPCPRRRQCCCIVGDKIVLFGG 308
|
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00022593001 | SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (638 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 650 | |||
| PLN02193 | 470 | PLN02193, PLN02193, nitrile-specifier protein | 3e-16 | |
| PLN02153 | 341 | PLN02153, PLN02153, epithiospecifier protein | 2e-12 | |
| PLN02193 | 470 | PLN02193, PLN02193, nitrile-specifier protein | 2e-10 | |
| PLN02193 | 470 | PLN02193, PLN02193, nitrile-specifier protein | 1e-08 | |
| pfam13418 | 49 | pfam13418, Kelch_4, Galactose oxidase, central dom | 3e-08 | |
| PLN02193 | 470 | PLN02193, PLN02193, nitrile-specifier protein | 5e-08 | |
| pfam13415 | 48 | pfam13415, Kelch_3, Galactose oxidase, central dom | 5e-08 | |
| pfam13415 | 48 | pfam13415, Kelch_3, Galactose oxidase, central dom | 8e-07 | |
| pfam01344 | 46 | pfam01344, Kelch_1, Kelch motif | 1e-06 | |
| pfam13415 | 48 | pfam13415, Kelch_3, Galactose oxidase, central dom | 2e-06 | |
| TIGR03547 | 346 | TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family | 2e-06 | |
| PRK14131 | 376 | PRK14131, PRK14131, N-acetylneuraminic acid mutaro | 2e-06 | |
| pfam13418 | 49 | pfam13418, Kelch_4, Galactose oxidase, central dom | 3e-06 | |
| pfam01344 | 46 | pfam01344, Kelch_1, Kelch motif | 6e-06 | |
| pfam13415 | 48 | pfam13415, Kelch_3, Galactose oxidase, central dom | 7e-06 | |
| PLN02772 | 398 | PLN02772, PLN02772, guanylate kinase | 1e-05 | |
| pfam13854 | 42 | pfam13854, Kelch_5, Kelch motif | 2e-05 | |
| pfam13854 | 42 | pfam13854, Kelch_5, Kelch motif | 2e-05 | |
| PLN02153 | 341 | PLN02153, PLN02153, epithiospecifier protein | 3e-05 | |
| pfam13854 | 42 | pfam13854, Kelch_5, Kelch motif | 3e-05 | |
| pfam13964 | 50 | pfam13964, Kelch_6, Kelch motif | 4e-05 | |
| PHA03098 | 534 | PHA03098, PHA03098, kelch-like protein; Provisiona | 7e-05 | |
| pfam01344 | 46 | pfam01344, Kelch_1, Kelch motif | 1e-04 | |
| pfam01344 | 46 | pfam01344, Kelch_1, Kelch motif | 1e-04 | |
| PLN02772 | 398 | PLN02772, PLN02772, guanylate kinase | 1e-04 | |
| PHA03098 | 534 | PHA03098, PHA03098, kelch-like protein; Provisiona | 1e-04 | |
| PLN02193 | 470 | PLN02193, PLN02193, nitrile-specifier protein | 2e-04 | |
| pfam13415 | 48 | pfam13415, Kelch_3, Galactose oxidase, central dom | 2e-04 | |
| pfam07646 | 48 | pfam07646, Kelch_2, Kelch motif | 2e-04 | |
| pfam13418 | 49 | pfam13418, Kelch_4, Galactose oxidase, central dom | 3e-04 | |
| pfam13964 | 50 | pfam13964, Kelch_6, Kelch motif | 3e-04 | |
| pfam13418 | 49 | pfam13418, Kelch_4, Galactose oxidase, central dom | 5e-04 | |
| pfam13964 | 50 | pfam13964, Kelch_6, Kelch motif | 5e-04 | |
| pfam07646 | 48 | pfam07646, Kelch_2, Kelch motif | 5e-04 | |
| TIGR03548 | 323 | TIGR03548, mutarot_permut, cyclically-permuted mut | 7e-04 | |
| TIGR03547 | 346 | TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family | 8e-04 | |
| pfam13418 | 49 | pfam13418, Kelch_4, Galactose oxidase, central dom | 0.001 | |
| TIGR03547 | 346 | TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family | 0.001 | |
| COG3055 | 381 | COG3055, COG3055, Uncharacterized protein conserve | 0.001 | |
| pfam13964 | 50 | pfam13964, Kelch_6, Kelch motif | 0.002 | |
| PRK14131 | 376 | PRK14131, PRK14131, N-acetylneuraminic acid mutaro | 0.003 | |
| pfam13854 | 42 | pfam13854, Kelch_5, Kelch motif | 0.003 |
| >gnl|CDD|177844 PLN02193, PLN02193, nitrile-specifier protein | Back alignment and domain information |
|---|
Score = 81.5 bits (201), Expect = 3e-16
Identities = 66/243 (27%), Positives = 102/243 (41%), Gaps = 19/243 (7%)
Query: 65 WSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVND--LHILDLESKEWMRPECRG 122
W + G+GPG R SH G+K+ FGG + D L++ DLE++ W G
Sbjct: 153 WIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATG 212
Query: 123 APPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWA--SPAVKGDIPVP 180
P + + +FGG + Y N + D T W +P +G P P
Sbjct: 213 DVPHLSCLGVRMVSIGSTLYVFGGR-DASRQY-NGFYSFDTTTNEWKLLTPVEEG--PTP 268
Query: 181 RDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIG 240
R HS ++V+GG +D ++ W + G S +R G +
Sbjct: 269 RSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQ 328
Query: 241 TKVYIIGG-----VGDKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVTGSDIVI 295
KV+++ G V D HYY+ + W+Q++T G +P R A+ G IVI
Sbjct: 329 GKVWVVYGFNGCEVDDVHYYDPV------QDKWTQVETFGVRPSERSVFASAAVGKHIVI 382
Query: 296 YGG 298
+GG
Sbjct: 383 FGG 385
|
Length = 470 |
| >gnl|CDD|177814 PLN02153, PLN02153, epithiospecifier protein | Back alignment and domain information |
|---|
Score = 68.5 bits (167), Expect = 2e-12
Identities = 64/248 (25%), Positives = 100/248 (40%), Gaps = 26/248 (10%)
Query: 72 GQGPGPRDSHSAILWGHKMIVFGG--TNGYKKVNDLHILDLESKEWMRPECRGAPPSPRE 129
G+GPGPR SH + G K+ FGG DL++ D + W G P
Sbjct: 17 GKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISC 76
Query: 130 SHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDI---PVPRDSHSS 186
+ K+ IFGG E +D + D W K D P R HS
Sbjct: 77 LGVRMVAVGTKLYIFGGRDEKRE--FSDFYSYDTVKNEWTF-LTKLDEEGGPEARTFHSM 133
Query: 187 NVIANRLFVYGGDCGD------QYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIG 240
N ++V+GG + I+ ++ W +L G + R G +
Sbjct: 134 ASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQ 193
Query: 241 TKVYIIGGV------GDKHYY--NDIWILNVSTCSWSQLDTCGQQPQGR--FSHAAVVTG 290
K++++ G G K Y N + + ++ W++++T G +P R F+HA V G
Sbjct: 194 GKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVV--G 251
Query: 291 SDIVIYGG 298
I+I+GG
Sbjct: 252 KYIIIFGG 259
|
Length = 341 |
| >gnl|CDD|177844 PLN02193, PLN02193, nitrile-specifier protein | Back alignment and domain information |
|---|
Score = 63.1 bits (153), Expect = 2e-10
Identities = 58/200 (29%), Positives = 82/200 (41%), Gaps = 17/200 (8%)
Query: 114 EWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAV 173
+W++ E +G P R SH VG +K+ FGG L+V DL+T W+
Sbjct: 152 KWIKVEQKGEGPGLRCSHGIAQVG-NKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPA 210
Query: 174 KGDIPVPRDSHSSNV------IANRLFVYGG-DCGDQYHGDIDMLDMNSLTWSRLAIIGS 226
GD+P H S + I + L+V+GG D QY+G D + W L +
Sbjct: 211 TGDVP-----HLSCLGVRMVSIGSTLYVFGGRDASRQYNG-FYSFDTTTNEWKLLTPVEE 264
Query: 227 SPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHA- 285
P R+ H+ VY+ GGV + N+ W T G R
Sbjct: 265 GPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGL 324
Query: 286 AVVTGSDIVIYG--GCGEDE 303
VV G V+YG GC D+
Sbjct: 325 EVVQGKVWVVYGFNGCEVDD 344
|
Length = 470 |
| >gnl|CDD|177844 PLN02193, PLN02193, nitrile-specifier protein | Back alignment and domain information |
|---|
Score = 57.7 bits (139), Expect = 1e-08
Identities = 51/214 (23%), Positives = 79/214 (36%), Gaps = 17/214 (7%)
Query: 40 VYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGY 99
+Y+FGG + + T W L +GP PR HS + VFGG +
Sbjct: 231 LYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSAT 290
Query: 100 KKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLH 159
++ L ++ K+W G S R +V V++G +G ++D+H
Sbjct: 291 ARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNG----CEVDDVH 346
Query: 160 VLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCG---------DQYHGDIDM 210
D +W G P R +S + + ++GG+ Q
Sbjct: 347 YYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFA 406
Query: 211 LDMNSLTWSRLAIIGS---SPGVRAGHAAINIGT 241
LD +L W RL G +P R G A GT
Sbjct: 407 LDTETLQWERLDKFGEEEETPSSR-GWTASTTGT 439
|
Length = 470 |
| >gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 3e-08
Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 127 PRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRW 168
PR HT+T +GD ++ +FGG E + + L+D+ V DL T W
Sbjct: 1 PRAYHTSTSIGDGRLYLFGGENE-DGSVLSDVWVFDLSTNTW 41
|
Length = 49 |
| >gnl|CDD|177844 PLN02193, PLN02193, nitrile-specifier protein | Back alignment and domain information |
|---|
Score = 55.3 bits (133), Expect = 5e-08
Identities = 34/141 (24%), Positives = 61/141 (43%), Gaps = 3/141 (2%)
Query: 167 RWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQYHGD--IDMLDMNSLTWSRLAII 224
+W KG+ P R SH + N+++ +GG+ D + + D+ + TWS
Sbjct: 152 KWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPAT 211
Query: 225 GSSPGVRA-GHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFS 283
G P + G ++IG+ +Y+ GG YN + + +T W L + P R
Sbjct: 212 GDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSF 271
Query: 284 HAAVVTGSDIVIYGGCGEDER 304
H+ ++ ++GG R
Sbjct: 272 HSMAADEENVYVFGGVSATAR 292
|
Length = 470 |
| >gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 5e-08
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 138 DDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI 189
K+ +FGG G+G LNDL V DL T W GD+P PR H++ VI
Sbjct: 1 GGKIYVFGGLGDG-GTRLNDLWVYDLDTNTWEKL---GDLPGPRAGHAATVI 48
|
Length = 48 |
| >gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 8e-07
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 240 GTKVYIIGG-VGDKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVV 288
G K+Y+ GG ND+W+ ++ T +W + G P R HAA V
Sbjct: 1 GGKIYVFGGLGDGGTRLNDLWVYDLDTNTWEK---LGDLPGPRAGHAATV 47
|
Length = 48 |
| >gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 1e-06
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 231 RAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQL 271
R+G + +G K+Y+IGG + + + + T +WS+L
Sbjct: 2 RSGAGVVVLGGKIYVIGGYDGGQSLSSVEVYDPETNTWSKL 42
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase, for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 46 |
| >gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 2e-06
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 87 GHKMIVFGGTNG-YKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLV 136
G K+ VFGG ++NDL + DL++ W E G P PR H AT++
Sbjct: 1 GGKIYVFGGLGDGGTRLNDLWVYDLDTNTW---EKLGDLPGPRAGHAATVI 48
|
Length = 48 |
| >gnl|CDD|234253 TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 36/174 (20%), Positives = 69/174 (39%), Gaps = 34/174 (19%)
Query: 176 DIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLT--WSRLAIIGSSPGV-RA 232
D+PV + + +I ++++V G G ++ LD+ + W ++A PG R
Sbjct: 3 DLPVGFKNGTGAIIGDKVYVGLGSAGTSWY----KLDLKKPSKGWQKIA---DFPGGPRN 55
Query: 233 GHAAINIGTKVYIIGGVGDKH------YYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAA 286
A I K+Y+ GG+G + ++D++ + SW +LDT + P G +
Sbjct: 56 QAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDT--RSPVGLLGASG 113
Query: 287 V-VTGSDIVIYGG---------------CGEDERPLNELLVLQLGAEHPNYRYN 324
+ GG +D P ++L+ +Y +N
Sbjct: 114 FSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWN 167
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. Length = 346 |
| >gnl|CDD|237617 PRK14131, PRK14131, N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 19/133 (14%)
Query: 176 DIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLT--WSRLAIIGSSPGV-RA 232
D+PVP + + + N ++V G G ++ LD+N+ + W+++A + PG R
Sbjct: 24 DLPVPFKNGTGAIDNNTVYVGLGSAGTSWY----KLDLNAPSKGWTKIA---AFPGGPRE 76
Query: 233 GHAAINIGTKVYIIGGVGDK------HYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAA 286
A I K+Y+ GG+G ++D++ + T SW +LDT + P G H A
Sbjct: 77 QAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDT--RSPVGLAGHVA 134
Query: 287 VVT-GSDIVIYGG 298
V I GG
Sbjct: 135 VSLHNGKAYITGG 147
|
Length = 376 |
| >gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 3e-06
Identities = 14/45 (31%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 231 RAGHAAINIG-TKVYIIGGVGDK-HYYNDIWILNVSTCSWSQLDT 273
RA H + +IG ++Y+ GG + +D+W+ ++ST +W++L +
Sbjct: 2 RAYHTSTSIGDGRLYLFGGENEDGSVLSDVWVFDLSTNTWTRLPS 46
|
Length = 49 |
| >gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 6e-06
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 28 RWGHSACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLAT 70
R G G +Y+ GG GG V + + +T WS L +
Sbjct: 2 RSGAGVVVLGGKIYVIGGYDGGQSLSSVEVYDPETNTWSKLPS 44
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase, for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 46 |
| >gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 7e-06
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 38 GAVYIFGGCCG-GLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSA 83
G +Y+FGG G D+ + +LDT W L G PGPR H+A
Sbjct: 2 GKIYVFGGLGDGGTRLNDLWVYDLDTNTWEKL---GDLPGPRAGHAA 45
|
Length = 48 |
| >gnl|CDD|215414 PLN02772, PLN02772, guanylate kinase | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 70 TTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVN-DLHILDLESKEWMRPECRGAPPSPR 128
T G G P++ +++ G K V GG + ++ + ILD + W+ P G P P
Sbjct: 17 TNGFGVKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPC 76
Query: 129 ESHTATLVGDDK-MVIFGGSGEGEANYL 155
+ ++A ++ D+ +VI GS ++ +
Sbjct: 77 KGYSAVVLNKDRILVIKKGSAPDDSIWF 104
|
Length = 398 |
| >gnl|CDD|222419 pfam13854, Kelch_5, Kelch motif | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 2e-05
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 124 PPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKT 165
P PR +H A +VG ++ ++GG G +D++VL L
Sbjct: 1 LPVPRANHCAVVVGG-EIYLYGGYTSGNGQSSDDVYVLSLPG 41
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 42 |
| >gnl|CDD|222419 pfam13854, Kelch_5, Kelch motif | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 2e-05
Identities = 11/40 (27%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 228 PGVRAGHAAINIGTKVYIIGGVG--DKHYYNDIWILNVST 265
P RA H A+ +G ++Y+ GG + +D+++L++
Sbjct: 2 PVPRANHCAVVVGGEIYLYGGYTSGNGQSSDDVYVLSLPG 41
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 42 |
| >gnl|CDD|177814 PLN02153, PLN02153, epithiospecifier protein | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 3e-05
Identities = 49/179 (27%), Positives = 70/179 (39%), Gaps = 24/179 (13%)
Query: 25 PPERWGHSACYSHGAVYIFGGCC-GGL-----HFGDVLMLNLDTMVWSTLATTGQGPGPR 78
P R HS VY+FGG GGL F + N+ W L G+ R
Sbjct: 125 PEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKR 184
Query: 79 DSHS-AILWGHKMIVF--------GGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRE 129
A++ G +V+ GG + Y+ N + D S +W E GA PS R
Sbjct: 185 GGAGFAVVQGKIWVVYGFATSILPGGKSDYES-NAVQFFDPASGKWTEVETTGAKPSARS 243
Query: 130 SHTATLVGDDKMVIFGG-------SGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPR 181
+VG ++IFGG G N+ + LD +T+ W G+ +PR
Sbjct: 244 VFAHAVVG-KYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPR 301
|
Length = 341 |
| >gnl|CDD|222419 pfam13854, Kelch_5, Kelch motif | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 3e-05
Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 75 PGPRDSHSAILWGHKMIVFGGTNGYKKV--NDLHILDLESK 113
P PR +H A++ G ++ ++GG +D+++L L
Sbjct: 2 PVPRANHCAVVVGGEIYLYGGYTSGNGQSSDDVYVLSLPGF 42
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 42 |
| >gnl|CDD|206134 pfam13964, Kelch_6, Kelch motif | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 4e-05
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 231 RAGHAAINIGTKVYIIGGVGDKHYY-NDIWILNVSTCSWSQLD 272
R GH+A+++G K+Y+ GG + N + + + T SW +L
Sbjct: 2 RTGHSAVSVGGKIYVFGGYSNGSKASNKVLVYDPETGSWEKLP 44
|
Length = 50 |
| >gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 7e-05
Identities = 45/237 (18%), Positives = 91/237 (38%), Gaps = 24/237 (10%)
Query: 40 VYIFGGCCGGLHF-GDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNG 98
+Y GG V+ + T W+ + PR + ++ +++ V GG
Sbjct: 297 IYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIY---PRKNPGVTVFNNRIYVIGGIYN 353
Query: 99 YKKVNDLHILDLESKEWMRPECRGAPP--SPRESHTATLVGDDKMVIFGGSGEGEANYLN 156
+N + +W R PP PR + V + VI GG + + L
Sbjct: 354 SISLNTVESWKPGESKW-----REEPPLIFPRYNPCVVNVNNLIYVI-GGISKNDEL-LK 406
Query: 157 DLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDML---DM 213
+ L T +W+ +P+ + +++V GG +++ +
Sbjct: 407 TVECFSLNTNKWSK---GSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNP 463
Query: 214 NSLTWSRLAIIGSSPGVRAGHAAI-NIGTKVYIIGGVGDKHYYNDIWILNVSTCSWS 269
+ W+ L SS +A++ K+Y++GG ++Y N+I + + T +W+
Sbjct: 464 VTNKWTEL----SSLNFPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWT 516
|
Length = 534 |
| >gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 1e-04
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 180 PRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLA 222
PR V+ +++V GG G Q +++ D + TWS+L
Sbjct: 1 PRSGAGVVVLGGKIYVIGGYDGGQSLSSVEVYDPETNTWSKLP 43
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase, for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 46 |
| >gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 1e-04
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 77 PRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMR 117
PR ++ G K+ V GG +G + ++ + + D E+ W +
Sbjct: 1 PRSGAGVVVLGGKIYVIGGYDGGQSLSSVEVYDPETNTWSK 41
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase, for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 46 |
| >gnl|CDD|215414 PLN02772, PLN02772, guanylate kinase | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 1e-04
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 122 GAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPR 181
G P+ T+ +GD VI GG+ EG + + +LD T W SP V G P P
Sbjct: 19 GFGVKPKNRETSVTIGDKTYVI-GGNHEGNTLSI-GVQILDKITNNWVSPIVLGTGPKPC 76
Query: 182 DSHSSNVIAN-RLFVY 196
+S+ V+ R+ V
Sbjct: 77 KGYSAVVLNKDRILVI 92
|
Length = 398 |
| >gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 1e-04
Identities = 38/204 (18%), Positives = 69/204 (33%), Gaps = 14/204 (6%)
Query: 28 RWGHSACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWG 87
R + +Y+ GG + V W PR + +
Sbjct: 333 RKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIF---PRYNPCVVNVN 389
Query: 88 HKMIVFGGTN-GYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGG 146
+ + V GG + + + + L + +W + P A VI G
Sbjct: 390 NLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPL---PISHYGGCAIYHDGKIYVIGGI 446
Query: 147 SGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQYHG 206
S N + + T +W + PR + S + N+++V GGD + Y
Sbjct: 447 SYIDNIKVYNIVESYNPVTNKWT---ELSSLNFPRINASLCIFNNKIYVVGGDKYEYYIN 503
Query: 207 DIDMLDMNSLTWS----RLAIIGS 226
+I++ D + TW+ +IGS
Sbjct: 504 EIEVYDDKTNTWTLFCKFPKVIGS 527
|
Length = 534 |
| >gnl|CDD|177844 PLN02193, PLN02193, nitrile-specifier protein | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 2e-04
Identities = 41/151 (27%), Positives = 59/151 (39%), Gaps = 9/151 (5%)
Query: 25 PPERWGHSACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAI 84
P R HS VY+FGG + N+ W +T G R
Sbjct: 266 PTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLE 325
Query: 85 LWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIF 144
+ K+ V G NG +V+D+H D +W + E G PS R + VG +VIF
Sbjct: 326 VVQGKVWVVYGFNGC-EVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVG-KHIVIF 383
Query: 145 GG-------SGEGEANYLNDLHVLDLKTMRW 168
GG + G + LD +T++W
Sbjct: 384 GGEIAMDPLAHVGPGQLTDGTFALDTETLQW 414
|
Length = 470 |
| >gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 2e-04
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 191 NRLFVYGGDCGDQ-YHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAA 236
+++V+GG D+ + D+++ TW + +G PG RAGHAA
Sbjct: 2 GKIYVFGGLGDGGTRLNDLWVYDLDTNTWEK---LGDLPGPRAGHAA 45
|
Length = 48 |
| >gnl|CDD|116261 pfam07646, Kelch_2, Kelch motif | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 2e-04
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 127 PRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKG 175
PR H + V K+ + GGS +DL VLD +T W
Sbjct: 1 PRYPHASV-VVGGKLYVVGGSTGLGDLSSSDLWVLDPETNVWTELPALP 48
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Drosophila ring canal kelch protein is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 48 |
| >gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 3e-04
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 77 PRDSHSAILWG-HKMIVFGGTNG-YKKVNDLHILDLESKEWMRPECRGAPPS 126
PR H++ G ++ +FGG N ++D+ + DL + W + PS
Sbjct: 1 PRAYHTSTSIGDGRLYLFGGENEDGSVLSDVWVFDLSTNTW---TRLPSLPS 49
|
Length = 49 |
| >gnl|CDD|206134 pfam13964, Kelch_6, Kelch motif | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 3e-04
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 28 RWGHSACYSHGAVYIFGG-CCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPR 78
R GHSA G +Y+FGG G VL+ + +T W L P PR
Sbjct: 2 RTGHSAVSVGGKIYVFGGYSNGSKASNKVLVYDPETGSWEKLPPL---PTPR 50
|
Length = 50 |
| >gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 5e-04
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 28 RWGHSACY-SHGAVYIFGGCCG-GLHFGDVLMLNLDTMVWSTLAT 70
R H++ G +Y+FGG G DV + +L T W+ L +
Sbjct: 2 RAYHTSTSIGDGRLYLFGGENEDGSVLSDVWVFDLSTNTWTRLPS 46
|
Length = 49 |
| >gnl|CDD|206134 pfam13964, Kelch_6, Kelch motif | Back alignment and domain information |
|---|
Score = 37.8 bits (88), Expect = 5e-04
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 77 PRDSHSAILWGHKMIVFGG-TNGYKKVNDLHILDLESKEW 115
PR HSA+ G K+ VFGG +NG K N + + D E+ W
Sbjct: 1 PRTGHSAVSVGGKIYVFGGYSNGSKASNKVLVYDPETGSW 40
|
Length = 50 |
| >gnl|CDD|116261 pfam07646, Kelch_2, Kelch motif | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 5e-04
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 77 PRDSHSAILWGHKMIVFGG--TNGYKKVNDLHILDLESKEW 115
PR H++++ G K+ V GG G +DL +LD E+ W
Sbjct: 1 PRYPHASVVVGGKLYVVGGSTGLGDLSSSDLWVLDPETNVW 41
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Drosophila ring canal kelch protein is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 48 |
| >gnl|CDD|211835 TIGR03548, mutarot_permut, cyclically-permuted mutarotase family protein | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 7e-04
Identities = 45/178 (25%), Positives = 66/178 (37%), Gaps = 11/178 (6%)
Query: 25 PPERWGHSACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMVWS-TLATTGQGPGPRDSHSA 83
+G S +G YI GG F V + LD + + T P D+ SA
Sbjct: 61 YAAAYGASISTENGIYYI-GGSNSSESFSSVYRITLDESKEALIIETLPSLPFAMDNGSA 119
Query: 84 ILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVI 143
K+ V GG K N + +LE++EW E P +PR + +++ +
Sbjct: 120 TYKDGKLYVGGGNANGKPSNKFYCFNLETQEWE--ELPDFPGAPRVQPVCVKLQ-NELYV 176
Query: 144 FGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIA---NRLFVYGG 198
FGG G+ D + KT W A P + IA + L GG
Sbjct: 177 FGG---GDNIAYTDGYKYSPKTGTWEKVADPLSDGEPISLLGAASIAINESLLLCIGG 231
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. Length = 323 |
| >gnl|CDD|234253 TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 8e-04
Identities = 33/140 (23%), Positives = 55/140 (39%), Gaps = 19/140 (13%)
Query: 125 PSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTM--RWASPAVKGDIP-VPR 181
P ++ T ++GD V G +G + LDLK W A D P PR
Sbjct: 5 PVGFKNGTGAIIGDKVYVGLGSAG-------TSWYKLDLKKPSKGWQKIA---DFPGGPR 54
Query: 182 DSHSSNVIANRLFVYGGDCGDQYHGDIDMLD----MNSLTWSRLAIIGSSPGVRAGHAAI 237
+ + I +L+V+GG G + D + S + SP G +
Sbjct: 55 NQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGF 114
Query: 238 NI-GTKVYIIGGVGDKHYYN 256
++ + Y GGV +K+ ++
Sbjct: 115 SLHNGQAYFTGGV-NKNIFD 133
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. Length = 346 |
| >gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 0.001
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 180 PRDSHSSNVIA-NRLFVYGGDCGD-QYHGDIDMLDMNSLTWSRLA 222
PR H+S I RL+++GG+ D D+ + D+++ TW+RL
Sbjct: 1 PRAYHTSTSIGDGRLYLFGGENEDGSVLSDVWVFDLSTNTWTRLP 45
|
Length = 49 |
| >gnl|CDD|234253 TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.001
Identities = 56/293 (19%), Positives = 97/293 (33%), Gaps = 85/293 (29%)
Query: 76 GPRDSHSAILWGHKMIVFGG-----TNGYKKV-NDLHILDLESKEWMRPECRGAPPSPRE 129
GPR+ A K+ VFGG + G +V +D++ D + W + + R P
Sbjct: 52 GPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTR--SPVGLL 109
Query: 130 SHTATLVGDDKMVIFGGSGEGEAN-YLNDL-----------------------------H 159
+ + + + GG + + Y DL +
Sbjct: 110 GASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKN 169
Query: 160 VL--DLKTMRWASPAVKGDIPVPRDSHSSNVIA-NRLFVYGG--------DCGDQYHGDI 208
VL D T +W + G+ P + S+ V N+L + G QY
Sbjct: 170 VLSYDPSTNQWRN---LGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQY---- 222
Query: 209 DMLDMNSLTWSRL----AIIGSSPGVRAGHAAINIGTKVYIIGGVG-------------- 250
+ L W++L SS AG A + + GG
Sbjct: 223 -LFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLY 281
Query: 251 -----DKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVTGSDIVIYGG 298
K + ++++ L+ WS G+ PQG +V + +++ GG
Sbjct: 282 AHEGLIKAWSSEVYALDNG--KWS---KVGKLPQGLAYGVSVSWNNGVLLIGG 329
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. Length = 346 |
| >gnl|CDD|225597 COG3055, COG3055, Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 14/130 (10%)
Query: 176 DIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGV-RAGH 234
D+PV + + +I + ++V G G ++ +D+ W+++A PG R
Sbjct: 32 DLPVGFKNGAGALIGDTVYVGLGSAGTAFY-VLDLKKPGK-GWTKIA---DFPGGARNQA 86
Query: 235 AAINIGTKVYIIGGVGDK-----HYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVV- 288
A IG K+Y+ GG G +ND + + ST SW +LDT + P G +
Sbjct: 87 VAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDT--RSPTGLVGASTFSL 144
Query: 289 TGSDIVIYGG 298
G+ I +GG
Sbjct: 145 NGTKIYFFGG 154
|
Length = 381 |
| >gnl|CDD|206134 pfam13964, Kelch_6, Kelch motif | Back alignment and domain information |
|---|
Score = 36.3 bits (84), Expect = 0.002
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 127 PRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPR 181
PR H+A VG K+ +FGG G N + V D +T W +P PR
Sbjct: 1 PRTGHSAVSVGG-KIYVFGGYSNGS-KASNKVLVYDPETGSW---EKLPPLPTPR 50
|
Length = 50 |
| >gnl|CDD|237617 PRK14131, PRK14131, N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.003
Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 23/142 (16%)
Query: 125 PSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTM--RWASPAVKGDIP-VPR 181
P P ++ T + + V G +G + LDL W A P PR
Sbjct: 26 PVPFKNGTGAIDNNTVYVGLGSAG-------TSWYKLDLNAPSKGWTKIA---AFPGGPR 75
Query: 182 DSHSSNVIANRLFVYGG------DCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHA 235
+ + I +L+V+GG + Q D+ D + +W +L SP AGH
Sbjct: 76 EQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTR--SPVGLAGHV 133
Query: 236 AINI-GTKVYIIGGVGDKHYYN 256
A+++ K YI GGV +K+ ++
Sbjct: 134 AVSLHNGKAYITGGV-NKNIFD 154
|
Length = 376 |
| >gnl|CDD|222419 pfam13854, Kelch_5, Kelch motif | Back alignment and domain information |
|---|
Score = 35.7 bits (83), Expect = 0.003
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 278 PQGRFSHAAVVTGSDIVIYGG-CGEDERPLNELLVLQL 314
P R +H AVV G +I +YGG + + +++ VL L
Sbjct: 2 PVPRANHCAVVVGGEIYLYGGYTSGNGQSSDDVYVLSL 39
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 42 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 650 | |||
| PLN02193 | 470 | nitrile-specifier protein | 100.0 | |
| PLN02153 | 341 | epithiospecifier protein | 100.0 | |
| KOG4693 | 392 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| PLN02193 | 470 | nitrile-specifier protein | 100.0 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 100.0 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 100.0 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 100.0 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 100.0 | |
| KOG0379 | 482 | consensus Kelch repeat-containing proteins [Genera | 100.0 | |
| PLN02153 | 341 | epithiospecifier protein | 100.0 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 100.0 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 100.0 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 100.0 | |
| KOG4152 | 830 | consensus Host cell transcription factor HCFC1 [Ce | 100.0 | |
| KOG4693 | 392 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 100.0 | |
| KOG0379 | 482 | consensus Kelch repeat-containing proteins [Genera | 100.0 | |
| KOG1230 | 521 | consensus Protein containing repeated kelch motifs | 100.0 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 99.98 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 99.97 | |
| KOG1230 | 521 | consensus Protein containing repeated kelch motifs | 99.97 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 99.97 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 99.97 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 99.97 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 99.96 | |
| KOG4152 | 830 | consensus Host cell transcription factor HCFC1 [Ce | 99.96 | |
| COG3055 | 381 | Uncharacterized protein conserved in bacteria [Fun | 99.72 | |
| KOG2437 | 723 | consensus Muskelin [Signal transduction mechanisms | 99.7 | |
| COG3055 | 381 | Uncharacterized protein conserved in bacteria [Fun | 99.69 | |
| KOG2437 | 723 | consensus Muskelin [Signal transduction mechanisms | 99.55 | |
| PF13964 | 50 | Kelch_6: Kelch motif | 98.91 | |
| PF13964 | 50 | Kelch_6: Kelch motif | 98.9 | |
| PLN02772 | 398 | guanylate kinase | 98.74 | |
| PF13415 | 49 | Kelch_3: Galactose oxidase, central domain | 98.67 | |
| PLN02772 | 398 | guanylate kinase | 98.67 | |
| PF13415 | 49 | Kelch_3: Galactose oxidase, central domain | 98.66 | |
| PF03089 | 337 | RAG2: Recombination activating protein 2; InterPro | 98.63 | |
| PF07646 | 49 | Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is | 98.59 | |
| PF13418 | 49 | Kelch_4: Galactose oxidase, central domain; PDB: 2 | 98.57 | |
| PF01344 | 47 | Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is | 98.55 | |
| PF07646 | 49 | Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is | 98.55 | |
| PF13418 | 49 | Kelch_4: Galactose oxidase, central domain; PDB: 2 | 98.5 | |
| PF01344 | 47 | Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is | 98.47 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 98.45 | |
| PF13854 | 42 | Kelch_5: Kelch motif | 98.41 | |
| PF03089 | 337 | RAG2: Recombination activating protein 2; InterPro | 98.39 | |
| PF13854 | 42 | Kelch_5: Kelch motif | 98.35 | |
| smart00612 | 47 | Kelch Kelch domain. | 98.16 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 98.16 | |
| smart00612 | 47 | Kelch Kelch domain. | 98.15 | |
| TIGR01640 | 230 | F_box_assoc_1 F-box protein interaction domain. Th | 97.99 | |
| TIGR01640 | 230 | F_box_assoc_1 F-box protein interaction domain. Th | 97.53 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 97.51 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 97.26 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 96.89 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 96.67 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 96.57 | |
| cd00094 | 194 | HX Hemopexin-like repeats.; Hemopexin is a heme-bi | 95.75 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 95.62 | |
| cd00094 | 194 | HX Hemopexin-like repeats.; Hemopexin is a heme-bi | 95.55 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 95.34 | |
| PF07893 | 342 | DUF1668: Protein of unknown function (DUF1668); In | 94.92 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 94.75 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 94.55 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 94.45 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 94.22 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 94.21 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 94.2 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 94.17 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 93.71 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 93.2 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 92.98 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 92.96 | |
| PF07893 | 342 | DUF1668: Protein of unknown function (DUF1668); In | 92.72 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 92.64 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 92.62 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 92.48 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 92.41 | |
| PF02191 | 250 | OLF: Olfactomedin-like domain; InterPro: IPR003112 | 92.09 | |
| PF09910 | 339 | DUF2139: Uncharacterized protein conserved in arch | 91.7 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 91.63 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 91.37 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 90.93 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 90.75 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 90.64 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 90.6 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 90.5 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 89.98 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 89.88 | |
| PF02191 | 250 | OLF: Olfactomedin-like domain; InterPro: IPR003112 | 89.75 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 88.81 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 87.73 | |
| smart00284 | 255 | OLF Olfactomedin-like domains. | 87.69 | |
| PF08268 | 129 | FBA_3: F-box associated domain; InterPro: IPR01318 | 87.64 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 87.63 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 87.5 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 87.25 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 86.95 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 86.58 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 86.58 | |
| smart00284 | 255 | OLF Olfactomedin-like domains. | 86.54 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 86.11 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 86.06 | |
| PF08268 | 129 | FBA_3: F-box associated domain; InterPro: IPR01318 | 85.98 | |
| PF09910 | 339 | DUF2139: Uncharacterized protein conserved in arch | 85.86 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 85.06 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 83.74 | |
| TIGR01624 | 50 | LRP1_Cterm LRP1 C-terminal domain. This model repr | 82.51 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 81.99 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 81.85 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 81.42 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 81.29 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 80.01 |
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=377.93 Aligned_cols=300 Identities=22% Similarity=0.401 Sum_probs=255.4
Q ss_pred CCeEEeeecCCCCCCCcceeEEEEECCEEEEEccCCC--CcccceEEEEECCCCcEEEeecCCCCCC-CCcceEEEEECC
Q 006334 12 AAMWLYPKVLGFNPPERWGHSACYSHGAVYIFGGCCG--GLHFGDVLMLNLDTMVWSTLATTGQGPG-PRDSHSAILWGH 88 (650)
Q Consensus 12 ~~~W~~~~~~g~~P~~R~ghs~v~~~~~IyvfGG~~~--~~~~~dv~~yD~~t~sW~~l~~~g~~P~-pR~~hsa~~~~~ 88 (650)
+.+|.++...+..|.+|.+|+++++++.||||||... ....+++|+||+.+++|..++..+..|. .|.+|+++++++
T Consensus 150 ~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~ 229 (470)
T PLN02193 150 LGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGS 229 (470)
T ss_pred hceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECC
Confidence 5899988877778999999999999999999999753 2345789999999999998877665555 467899999999
Q ss_pred EEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCce
Q 006334 89 KMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRW 168 (650)
Q Consensus 89 ~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~W 168 (650)
+||||||.+....++++|+||+.+++|+++......|.+|+.|+++++ +++|||+||... ...++++++||+.+++|
T Consensus 230 ~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~-~~~iYv~GG~~~--~~~~~~~~~yd~~t~~W 306 (470)
T PLN02193 230 TLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAAD-EENVYVFGGVSA--TARLKTLDSYNIVDKKW 306 (470)
T ss_pred EEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEE-CCEEEEECCCCC--CCCcceEEEEECCCCEE
Confidence 999999998877899999999999999998544445889999999887 699999999853 44678999999999999
Q ss_pred eeccccCCCCCCCCcceeeeecCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEec
Q 006334 169 ASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGG 248 (650)
Q Consensus 169 t~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG 248 (650)
+.+...+.+|.+|..|++++++++||++||.++. .++++++||+.+++|+.++..+..|.+|..|++++++++|||+||
T Consensus 307 ~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~-~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG 385 (470)
T PLN02193 307 FHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGC-EVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGG 385 (470)
T ss_pred EeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCC-ccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECC
Confidence 9987666678899999999999999999997654 468999999999999999877777899999999999999999999
Q ss_pred cCC---------CcccCeEEEEECCCCcEEEeecCC---CCCCCcceeEEE--EE-C-CeEEEEcCCCCCCCCCCcEEEE
Q 006334 249 VGD---------KHYYNDIWILNVSTCSWSQLDTCG---QQPQGRFSHAAV--VT-G-SDIVIYGGCGEDERPLNELLVL 312 (650)
Q Consensus 249 ~~~---------~~~~~dv~~yD~~t~~W~~l~~~~---~~p~~R~~hsav--~~-~-~~lyV~GG~~~~~~~~~d~~~l 312 (650)
... ....+++|+||+.+++|+.+...+ ..|.+|..|+++ .+ + +.|++|||..+.+..++|+|+|
T Consensus 386 ~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~~~~~~D~~~~ 465 (470)
T PLN02193 386 EIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEEEETPSSRGWTASTTGTIDGKKGLVMHGGKAPTNDRFDDLFFY 465 (470)
T ss_pred ccCCccccccCccceeccEEEEEcCcCEEEEcccCCCCCCCCCCCccccceeeEEcCCceEEEEcCCCCccccccceEEE
Confidence 753 235679999999999999997643 357788777543 23 3 3499999998878889999999
Q ss_pred ecC
Q 006334 313 QLG 315 (650)
Q Consensus 313 ~l~ 315 (650)
+++
T Consensus 466 ~~~ 468 (470)
T PLN02193 466 GID 468 (470)
T ss_pred ecC
Confidence 876
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-41 Score=360.38 Aligned_cols=305 Identities=20% Similarity=0.372 Sum_probs=246.6
Q ss_pred cCCCeEEeeecCC-CCCCCcceeEEEEECCEEEEEccCCC--CcccceEEEEECCCCcEEEeecCCCCCCC-CcceEEEE
Q 006334 10 KRAAMWLYPKVLG-FNPPERWGHSACYSHGAVYIFGGCCG--GLHFGDVLMLNLDTMVWSTLATTGQGPGP-RDSHSAIL 85 (650)
Q Consensus 10 ~~~~~W~~~~~~g-~~P~~R~ghs~v~~~~~IyvfGG~~~--~~~~~dv~~yD~~t~sW~~l~~~g~~P~p-R~~hsa~~ 85 (650)
+....|..+...+ ..|.+|.+|++++++++||||||... ....+++|+||+.+++|..++.++..|.. +.+|++++
T Consensus 4 ~~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~ 83 (341)
T PLN02153 4 TLQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVA 83 (341)
T ss_pred ccCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEE
Confidence 3557799887644 47899999999999999999999853 33458999999999999998877544443 45789999
Q ss_pred ECCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecC--CCCCCCCcccEEEEEcCCEEEEEccccCCC----CcccceEE
Q 006334 86 WGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECR--GAPPSPRESHTATLVGDDKMVIFGGSGEGE----ANYLNDLH 159 (650)
Q Consensus 86 ~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~--~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~----~~~~~dv~ 159 (650)
++++||||||.+....++++++||+.+++|+.+... ...|.+|..|++++. +++|||+||..... ...+++++
T Consensus 84 ~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~v~ 162 (341)
T PLN02153 84 VGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASD-ENHVYVFGGVSKGGLMKTPERFRTIE 162 (341)
T ss_pred ECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEE-CCEEEEECCccCCCccCCCcccceEE
Confidence 999999999998777789999999999999987321 123789999998877 69999999985321 12468999
Q ss_pred EEecCCCceeeccccCCCCCCCCcceeeeecCEEEEEeccCC--------CCccCeEEEEECCCCcEEEeeecCCCCCcc
Q 006334 160 VLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCG--------DQYHGDIDMLDMNSLTWSRLAIIGSSPGVR 231 (650)
Q Consensus 160 ~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~--------~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R 231 (650)
+||+.+++|+.++..+..|.+|..|++++++++||++||... ....+++++||+.+++|++++..+.+|.+|
T Consensus 163 ~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r 242 (341)
T PLN02153 163 AYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSAR 242 (341)
T ss_pred EEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCc
Confidence 999999999998755555689999999999999999998642 123688999999999999998777789999
Q ss_pred cceEEEEECCEEEEEeccC---------CCcccCeEEEEECCCCcEEEeecCC--CCCCCcceeEEEEE--CCeEEEEcC
Q 006334 232 AGHAAINIGTKVYIIGGVG---------DKHYYNDIWILNVSTCSWSQLDTCG--QQPQGRFSHAAVVT--GSDIVIYGG 298 (650)
Q Consensus 232 ~~~s~v~~~~~IyI~GG~~---------~~~~~~dv~~yD~~t~~W~~l~~~~--~~p~~R~~hsav~~--~~~lyV~GG 298 (650)
..|++++++++||||||.. .....+++|+||+++++|+.+...+ .+|..|..++++.+ +++||||||
T Consensus 243 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~gG 322 (341)
T PLN02153 243 SVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHGG 322 (341)
T ss_pred ceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceEEEEcC
Confidence 9999999999999999974 2345679999999999999987532 34555554444443 458999999
Q ss_pred CCCCCCCCCcEEEEecC
Q 006334 299 CGEDERPLNELLVLQLG 315 (650)
Q Consensus 299 ~~~~~~~~~d~~~l~l~ 315 (650)
+...+..++|+|.+++.
T Consensus 323 ~~~~~~~~~~~~~~~~~ 339 (341)
T PLN02153 323 KLPTNERTDDLYFYAVN 339 (341)
T ss_pred cCCCCccccceEEEecc
Confidence 98776788999988764
|
|
| >KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-40 Score=322.28 Aligned_cols=285 Identities=32% Similarity=0.614 Sum_probs=253.6
Q ss_pred CeEEeeecCCCCCCCcceeEEEEECCEEEEEccCCCCccc-----ceEEEEECCCCcEEEeecC----------CCCCCC
Q 006334 13 AMWLYPKVLGFNPPERWGHSACYSHGAVYIFGGCCGGLHF-----GDVLMLNLDTMVWSTLATT----------GQGPGP 77 (650)
Q Consensus 13 ~~W~~~~~~g~~P~~R~ghs~v~~~~~IyvfGG~~~~~~~-----~dv~~yD~~t~sW~~l~~~----------g~~P~p 77 (650)
..|.. ...|- +.|.+|+++.++.+||-|||++....+ -|+.++|..+.+|+++++. +..|--
T Consensus 2 ~~WTV-HLeGG--PrRVNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyq 78 (392)
T KOG4693|consen 2 ATWTV-HLEGG--PRRVNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQ 78 (392)
T ss_pred ceEEE-EecCC--cccccceeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchh
Confidence 35774 33332 479999999999999999999854333 3799999999999998761 123667
Q ss_pred CcceEEEEECCEEEEEcccCC-CcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccc
Q 006334 78 RDSHSAILWGHKMIVFGGTNG-YKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLN 156 (650)
Q Consensus 78 R~~hsa~~~~~~lyVfGG~~~-~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~ 156 (650)
|++|+.+.+++++||.||.+. .+.-|-+|.||++++.|.+.++++..|.+|.+|++++++ +.+|||||+.+....+.+
T Consensus 79 RYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~g-n~MyiFGGye~~a~~FS~ 157 (392)
T KOG4693|consen 79 RYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWG-NQMYIFGGYEEDAQRFSQ 157 (392)
T ss_pred hcCceEEEEcceEEEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEEC-cEEEEecChHHHHHhhhc
Confidence 999999999999999999987 456799999999999999999999999999999999994 999999999877778899
Q ss_pred eEEEEecCCCceeeccccCCCCCCCCcceeeeecCEEEEEeccCC---------CCccCeEEEEECCCCcEEEeeecCCC
Q 006334 157 DLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCG---------DQYHGDIDMLDMNSLTWSRLAIIGSS 227 (650)
Q Consensus 157 dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~---------~~~~n~v~~yd~~t~~W~~i~~~g~~ 227 (650)
|++.+|+.|++|..+..++..|.=|..|+++++++.+|||||..+ ..+.+.+..+|+.+..|...+..+..
T Consensus 158 d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~ 237 (392)
T KOG4693|consen 158 DTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMK 237 (392)
T ss_pred cceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcC
Confidence 999999999999999999999999999999999999999999643 25678899999999999999888888
Q ss_pred CCcccceEEEEECCEEEEEeccCC--CcccCeEEEEECCCCcEEEeecCCCCCCCcceeEEEEECCeEEEEcCCCC
Q 006334 228 PGVRAGHAAINIGTKVYIIGGVGD--KHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVTGSDIVIYGGCGE 301 (650)
Q Consensus 228 P~~R~~~s~v~~~~~IyI~GG~~~--~~~~~dv~~yD~~t~~W~~l~~~~~~p~~R~~hsav~~~~~lyV~GG~~~ 301 (650)
|.+|..|++.+++++||+|||+++ +.-++|+|+||+.+..|..+...+..|.+|..+++++.++++|+|||...
T Consensus 238 P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LFGGTsP 313 (392)
T KOG4693|consen 238 PGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVYLFGGTSP 313 (392)
T ss_pred CCcccccceEEEcceEEEecccchhhhhhhcceeecccccchheeeeccCCCCCcccceeEEEECCEEEEecCCCC
Confidence 999999999999999999999985 45689999999999999999999999999999999999999999999754
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-36 Score=333.25 Aligned_cols=283 Identities=23% Similarity=0.365 Sum_probs=235.5
Q ss_pred cceeEEEEECCEEEEEccCCCCcccceEEEE--ECCC----CcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCC--
Q 006334 28 RWGHSACYSHGAVYIFGGCCGGLHFGDVLML--NLDT----MVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGY-- 99 (650)
Q Consensus 28 R~ghs~v~~~~~IyvfGG~~~~~~~~dv~~y--D~~t----~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~-- 99 (650)
..+...++.+++|+.|+|.... .++.+-.| ++.+ ++|..+...+..|.||.+|++++++++||||||....
T Consensus 111 ~~g~~f~~~~~~ivgf~G~~~~-~~~~ig~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~ 189 (470)
T PLN02193 111 RPGVKFVLQGGKIVGFHGRSTD-VLHSLGAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQ 189 (470)
T ss_pred CCCCEEEEcCCeEEEEeccCCC-cEEeeEEEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCC
Confidence 3455566678999999997643 35555444 6544 7999998877779999999999999999999998532
Q ss_pred cCcCeEEEEECCCCcEEeeecCCCCCC-CCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCC
Q 006334 100 KKVNDLHILDLESKEWMRPECRGAPPS-PRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIP 178 (650)
Q Consensus 100 ~~~ndv~~yD~~t~~W~~l~~~~~~P~-~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP 178 (650)
...+++|+||+.+++|+.+...+..|. .|..|+++++ +++||||||... ...++++|+||+.+++|+.+...+..|
T Consensus 190 ~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~-~~~lYvfGG~~~--~~~~ndv~~yD~~t~~W~~l~~~~~~P 266 (470)
T PLN02193 190 PIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSI-GSTLYVFGGRDA--SRQYNGFYSFDTTTNEWKLLTPVEEGP 266 (470)
T ss_pred CeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEE-CCEEEEECCCCC--CCCCccEEEEECCCCEEEEcCcCCCCC
Confidence 235789999999999998755545554 3567777777 699999999853 346899999999999999987444458
Q ss_pred CCCCcceeeeecCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeE
Q 006334 179 VPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDI 258 (650)
Q Consensus 179 ~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv 258 (650)
.+|+.|++++++++|||+||......++++++||+.+++|+.++..+.+|.+|..|++++++++|||+||.+.. .++++
T Consensus 267 ~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~-~~~dv 345 (470)
T PLN02193 267 TPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGC-EVDDV 345 (470)
T ss_pred CCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCC-ccCce
Confidence 89999999999999999999887778899999999999999998666677889999999999999999998654 47899
Q ss_pred EEEECCCCcEEEeecCCCCCCCcceeEEEEECCeEEEEcCCCCC--------CCCCCcEEEEecC
Q 006334 259 WILNVSTCSWSQLDTCGQQPQGRFSHAAVVTGSDIVIYGGCGED--------ERPLNELLVLQLG 315 (650)
Q Consensus 259 ~~yD~~t~~W~~l~~~~~~p~~R~~hsav~~~~~lyV~GG~~~~--------~~~~~d~~~l~l~ 315 (650)
++||+.+++|+.+...+..|.+|..|++++++++||||||.... ....++++.||+.
T Consensus 346 ~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~ 410 (470)
T PLN02193 346 HYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTE 410 (470)
T ss_pred EEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcC
Confidence 99999999999998777778999999999999999999998542 1345789999986
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-36 Score=339.24 Aligned_cols=272 Identities=22% Similarity=0.388 Sum_probs=243.8
Q ss_pred CCCCcceeEEEEECCEEEEEccCCC-CcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccC-CCcC
Q 006334 24 NPPERWGHSACYSHGAVYIFGGCCG-GLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTN-GYKK 101 (650)
Q Consensus 24 ~P~~R~ghs~v~~~~~IyvfGG~~~-~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~-~~~~ 101 (650)
.+.+|..... ...+.||++||... ....+.+..||+.++.|..+..+ |.+|..+++++++|+||++||++ +...
T Consensus 272 ~~~~~t~~r~-~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m---~~~r~~~~~~~~~~~lYv~GG~~~~~~~ 347 (571)
T KOG4441|consen 272 MQSPRTRPRR-SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPM---PSPRCRVGVAVLNGKLYVVGGYDSGSDR 347 (571)
T ss_pred ccCCCcccCc-CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCC---CcccccccEEEECCEEEEEccccCCCcc
Confidence 3444444433 45689999999986 67889999999999999999988 78999999999999999999999 7888
Q ss_pred cCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCC
Q 006334 102 VNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPR 181 (650)
Q Consensus 102 ~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R 181 (650)
++++|+||+.+++|+.+ .++..+|..++++++ ++.||++||.+ +...++.+++||+.+++|+.+. +++.+|
T Consensus 348 l~~ve~YD~~~~~W~~~---a~M~~~R~~~~v~~l-~g~iYavGG~d--g~~~l~svE~YDp~~~~W~~va---~m~~~r 418 (571)
T KOG4441|consen 348 LSSVERYDPRTNQWTPV---APMNTKRSDFGVAVL-DGKLYAVGGFD--GEKSLNSVECYDPVTNKWTPVA---PMLTRR 418 (571)
T ss_pred cceEEEecCCCCceecc---CCccCccccceeEEE-CCEEEEEeccc--cccccccEEEecCCCCcccccC---CCCcce
Confidence 99999999999999997 789999999999999 69999999996 4678999999999999999877 899999
Q ss_pred CcceeeeecCEEEEEeccCCCC-ccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEE
Q 006334 182 DSHSSNVIANRLFVYGGDCGDQ-YHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWI 260 (650)
Q Consensus 182 ~~hs~v~~~~~Iyv~GG~~~~~-~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~ 260 (650)
++|++++++++||++||.++.. .++++++||+.+++|+.++ +++.+|.++++++++++||++||.++......+++
T Consensus 419 ~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~---~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ 495 (571)
T KOG4441|consen 419 SGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIA---PMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVER 495 (571)
T ss_pred eeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecC---CcccccccceEEEECCEEEEECCccCCCccceEEE
Confidence 9999999999999999988877 9999999999999999998 89999999999999999999999998777888999
Q ss_pred EECCCCcEEEeecCCCCCCCcceeEEEEECCeEEEEcCCCCCCCCCCcEEEEecC
Q 006334 261 LNVSTCSWSQLDTCGQQPQGRFSHAAVVTGSDIVIYGGCGEDERPLNELLVLQLG 315 (650)
Q Consensus 261 yD~~t~~W~~l~~~~~~p~~R~~hsav~~~~~lyV~GG~~~~~~~~~d~~~l~l~ 315 (650)
||+.+++|+.+.. +..+|..++++++++++|++||++ ....++.+..+|..
T Consensus 496 ydp~~~~W~~v~~---m~~~rs~~g~~~~~~~ly~vGG~~-~~~~l~~ve~ydp~ 546 (571)
T KOG4441|consen 496 YDPETNQWTMVAP---MTSPRSAVGVVVLGGKLYAVGGFD-GNNNLNTVECYDPE 546 (571)
T ss_pred EcCCCCceeEccc---CccccccccEEEECCEEEEEeccc-CccccceeEEcCCC
Confidence 9999999999954 788999999999999999999965 33456666666665
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=336.32 Aligned_cols=262 Identities=21% Similarity=0.394 Sum_probs=237.4
Q ss_pred CCCcCCCeEEeeecCCCCCCCcceeEEEEECCEEEEEccCC-CCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEE
Q 006334 7 ENAKRAAMWLYPKVLGFNPPERWGHSACYSHGAVYIFGGCC-GGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAIL 85 (650)
Q Consensus 7 ~~~~~~~~W~~~~~~g~~P~~R~ghs~v~~~~~IyvfGG~~-~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~ 85 (650)
-+++.+..|.. ....|.+|..++++++++.||+.||++ +...++++|+||+.+++|..++++ ..+|..+++++
T Consensus 305 ~yd~~~~~w~~---~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M---~~~R~~~~v~~ 378 (571)
T KOG4441|consen 305 CYDPKTNEWSS---LAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPM---NTKRSDFGVAV 378 (571)
T ss_pred EecCCcCcEee---cCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCc---cCccccceeEE
Confidence 46788888994 345779999999999999999999999 688899999999999999999998 66899999999
Q ss_pred ECCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCC
Q 006334 86 WGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKT 165 (650)
Q Consensus 86 ~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t 165 (650)
++|.||++||.++...++++++||+.+++|..+ ++++.+|++|+++++ +++||++||.+. ...+++++++||+.+
T Consensus 379 l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~v---a~m~~~r~~~gv~~~-~g~iYi~GG~~~-~~~~l~sve~YDP~t 453 (571)
T KOG4441|consen 379 LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPV---APMLTRRSGHGVAVL-GGKLYIIGGGDG-SSNCLNSVECYDPET 453 (571)
T ss_pred ECCEEEEEeccccccccccEEEecCCCCccccc---CCCCcceeeeEEEEE-CCEEEEEcCcCC-CccccceEEEEcCCC
Confidence 999999999999999999999999999999997 778889999999988 699999999853 344899999999999
Q ss_pred CceeeccccCCCCCCCCcceeeeecCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEE
Q 006334 166 MRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYI 245 (650)
Q Consensus 166 ~~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI 245 (650)
++|+.++ +|+.+|.++.+++++++||++||.++...+.++++||+.+++|+.+. +++.+|..+.++++++++|+
T Consensus 454 ~~W~~~~---~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~---~m~~~rs~~g~~~~~~~ly~ 527 (571)
T KOG4441|consen 454 NTWTLIA---PMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVA---PMTSPRSAVGVVVLGGKLYA 527 (571)
T ss_pred CceeecC---CcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcc---cCccccccccEEEECCEEEE
Confidence 9999888 99999999999999999999999988778888999999999999997 78899999999999999999
Q ss_pred EeccCCCcccCeEEEEECCCCcEEEeecCCCCCCCcceeEEEE
Q 006334 246 IGGVGDKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVV 288 (650)
Q Consensus 246 ~GG~~~~~~~~dv~~yD~~t~~W~~l~~~~~~p~~R~~hsav~ 288 (650)
+||+++...++.+..||+.+++|+.... +...|.+.++++
T Consensus 528 vGG~~~~~~l~~ve~ydp~~d~W~~~~~---~~~~~~~~~~~~ 567 (571)
T KOG4441|consen 528 VGGFDGNNNLNTVECYDPETDTWTEVTE---PESGRGGAGVAV 567 (571)
T ss_pred EecccCccccceeEEcCCCCCceeeCCC---ccccccCcceEE
Confidence 9999999999999999999999999864 344454444444
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=308.19 Aligned_cols=270 Identities=21% Similarity=0.286 Sum_probs=215.9
Q ss_pred CCcceeEEEEECCEEEEEccCCCC----------cccceEEEEECCC--CcEEEeecCCCCCCCCcceEEEEECCEEEEE
Q 006334 26 PERWGHSACYSHGAVYIFGGCCGG----------LHFGDVLMLNLDT--MVWSTLATTGQGPGPRDSHSAILWGHKMIVF 93 (650)
Q Consensus 26 ~~R~ghs~v~~~~~IyvfGG~~~~----------~~~~dv~~yD~~t--~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVf 93 (650)
..+.++.++++++.|||+||.+.. ..++++|+|+... .+|..+..+ |.+|..+++++++++||++
T Consensus 2 ~~~~g~~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~l---p~~r~~~~~~~~~~~lyvi 78 (323)
T TIGR03548 2 LGVAGCYAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQL---PYEAAYGASVSVENGIYYI 78 (323)
T ss_pred CceeeEeeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccC---CccccceEEEEECCEEEEE
Confidence 567899999999999999998642 3567899996332 369888776 7789888888899999999
Q ss_pred cccCCCcCcCeEEEEECCCCcEE-eeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeecc
Q 006334 94 GGTNGYKKVNDLHILDLESKEWM-RPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPA 172 (650)
Q Consensus 94 GG~~~~~~~ndv~~yD~~t~~W~-~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~ 172 (650)
||.++...++++|+||+.+++|. .+....++|.+|..|+++++ +++|||+||... ...++++++||+.+++|+.++
T Consensus 79 GG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~~~iYv~GG~~~--~~~~~~v~~yd~~~~~W~~~~ 155 (323)
T TIGR03548 79 GGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-DGTLYVGGGNRN--GKPSNKSYLFNLETQEWFELP 155 (323)
T ss_pred cCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-CCEEEEEeCcCC--CccCceEEEEcCCCCCeeECC
Confidence 99988777899999999999983 22223678899999999887 699999999742 345799999999999999877
Q ss_pred ccCCCC-CCCCcceeeeecCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecC--CCCCcccceEEE-EECCEEEEEec
Q 006334 173 VKGDIP-VPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIG--SSPGVRAGHAAI-NIGTKVYIIGG 248 (650)
Q Consensus 173 ~~~~lP-~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g--~~P~~R~~~s~v-~~~~~IyI~GG 248 (650)
++| .+|..|+++.++++|||+||.+.. ...++++||+.+++|+.++... ..|..+..++++ +.+++|||+||
T Consensus 156 ---~~p~~~r~~~~~~~~~~~iYv~GG~~~~-~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG 231 (323)
T TIGR03548 156 ---DFPGEPRVQPVCVKLQNELYVFGGGSNI-AYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGG 231 (323)
T ss_pred ---CCCCCCCCcceEEEECCEEEEEcCCCCc-cccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECC
Confidence 666 479999999999999999997653 3467899999999999987432 234444455544 44689999999
Q ss_pred cCCCc--------------------------------ccCeEEEEECCCCcEEEeecCCCCC-CCcceeEEEEECCeEEE
Q 006334 249 VGDKH--------------------------------YYNDIWILNVSTCSWSQLDTCGQQP-QGRFSHAAVVTGSDIVI 295 (650)
Q Consensus 249 ~~~~~--------------------------------~~~dv~~yD~~t~~W~~l~~~~~~p-~~R~~hsav~~~~~lyV 295 (650)
.+... ..+++++||+.+++|+.+.. +| .+|.+++++.++++|||
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~---~p~~~r~~~~~~~~~~~iyv 308 (323)
T TIGR03548 232 FNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGN---SPFFARCGAALLLTGNNIFS 308 (323)
T ss_pred cCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEccc---ccccccCchheEEECCEEEE
Confidence 86421 23679999999999999974 44 58999999999999999
Q ss_pred EcCCCCCCCCCCc
Q 006334 296 YGGCGEDERPLNE 308 (650)
Q Consensus 296 ~GG~~~~~~~~~d 308 (650)
+||.........+
T Consensus 309 ~GG~~~pg~rt~~ 321 (323)
T TIGR03548 309 INGELKPGVRTPD 321 (323)
T ss_pred EeccccCCcCCcC
Confidence 9998665544433
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=309.79 Aligned_cols=273 Identities=18% Similarity=0.287 Sum_probs=217.1
Q ss_pred CCCCcceeEEEEECCEEEEEccCCCCcccceEEEEEC--CCCcEEEeecCCCCC-CCCcceEEEEECCEEEEEcccCCCc
Q 006334 24 NPPERWGHSACYSHGAVYIFGGCCGGLHFGDVLMLNL--DTMVWSTLATTGQGP-GPRDSHSAILWGHKMIVFGGTNGYK 100 (650)
Q Consensus 24 ~P~~R~ghs~v~~~~~IyvfGG~~~~~~~~dv~~yD~--~t~sW~~l~~~g~~P-~pR~~hsa~~~~~~lyVfGG~~~~~ 100 (650)
.|.+|..+++++++++|||+||... +++|+||+ .+++|..++.+ | .+|..+++++++++|||+||++...
T Consensus 4 lp~~~~~~~~~~~~~~vyv~GG~~~----~~~~~~d~~~~~~~W~~l~~~---p~~~R~~~~~~~~~~~iYv~GG~~~~~ 76 (346)
T TIGR03547 4 LPVGFKNGTGAIIGDKVYVGLGSAG----TSWYKLDLKKPSKGWQKIADF---PGGPRNQAVAAAIDGKLYVFGGIGKAN 76 (346)
T ss_pred CCccccCceEEEECCEEEEEccccC----CeeEEEECCCCCCCceECCCC---CCCCcccceEEEECCEEEEEeCCCCCC
Confidence 5678888899899999999999743 67999996 57889999877 5 4899999999999999999986432
Q ss_pred ------CcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCC-----------------------
Q 006334 101 ------KVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGE----------------------- 151 (650)
Q Consensus 101 ------~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~----------------------- 151 (650)
.++++|+||+.+++|+.+. ..+|.+|.+++++.+.+++||++||.....
T Consensus 77 ~~~~~~~~~~v~~Yd~~~~~W~~~~--~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (346)
T TIGR03547 77 SEGSPQVFDDVYRYDPKKNSWQKLD--TRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIA 154 (346)
T ss_pred CCCcceecccEEEEECCCCEEecCC--CCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHH
Confidence 4789999999999999973 235667777777644479999999984210
Q ss_pred ---------CcccceEEEEecCCCceeeccccCCCCC-CCCcceeeeecCEEEEEeccCCCC-ccCeEEEEE--CCCCcE
Q 006334 152 ---------ANYLNDLHVLDLKTMRWASPAVKGDIPV-PRDSHSSNVIANRLFVYGGDCGDQ-YHGDIDMLD--MNSLTW 218 (650)
Q Consensus 152 ---------~~~~~dv~~yd~~t~~Wt~i~~~~~lP~-~R~~hs~v~~~~~Iyv~GG~~~~~-~~n~v~~yd--~~t~~W 218 (650)
...++++++||+.+++|+.+. ++|. +|..++++.++++|||+||..... ...+++.|+ +++++|
T Consensus 155 ~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~---~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W 231 (346)
T TIGR03547 155 AYFSQPPEDYFWNKNVLSYDPSTNQWRNLG---ENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEW 231 (346)
T ss_pred HHhCCChhHcCccceEEEEECCCCceeECc---cCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCcee
Confidence 012478999999999999876 7885 688999999999999999975433 234566665 567799
Q ss_pred EEeeecCCCCCcc-------cceEEEEECCEEEEEeccCCCc-----------------ccCeEEEEECCCCcEEEeecC
Q 006334 219 SRLAIIGSSPGVR-------AGHAAINIGTKVYIIGGVGDKH-----------------YYNDIWILNVSTCSWSQLDTC 274 (650)
Q Consensus 219 ~~i~~~g~~P~~R-------~~~s~v~~~~~IyI~GG~~~~~-----------------~~~dv~~yD~~t~~W~~l~~~ 274 (650)
+.++ ++|.+| ..|++++++++|||+||.+... ....+.+||+++++|+.+..
T Consensus 232 ~~~~---~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~- 307 (346)
T TIGR03547 232 NKLP---PLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGK- 307 (346)
T ss_pred eecC---CCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCC-
Confidence 9988 444433 4666888999999999985210 12468999999999999864
Q ss_pred CCCCCCcceeEEEEECCeEEEEcCCCCCCCCCCcEEEEec
Q 006334 275 GQQPQGRFSHAAVVTGSDIVIYGGCGEDERPLNELLVLQL 314 (650)
Q Consensus 275 ~~~p~~R~~hsav~~~~~lyV~GG~~~~~~~~~d~~~l~l 314 (650)
+|.+|..+++++++++|||+||....+...++++.+.+
T Consensus 308 --lp~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~~~ 345 (346)
T TIGR03547 308 --LPQGLAYGVSVSWNNGVLLIGGENSGGKAVTDVYLLSW 345 (346)
T ss_pred --CCCCceeeEEEEcCCEEEEEeccCCCCCEeeeEEEEEe
Confidence 78889999988999999999999877777888887654
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-35 Score=324.73 Aligned_cols=294 Identities=37% Similarity=0.715 Sum_probs=261.6
Q ss_pred cCCCCCCCcceeEEEEECCEEEEEccCCCCcccc--eEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccC
Q 006334 20 VLGFNPPERWGHSACYSHGAVYIFGGCCGGLHFG--DVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTN 97 (650)
Q Consensus 20 ~~g~~P~~R~ghs~v~~~~~IyvfGG~~~~~~~~--dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~ 97 (650)
..+..|.+|++|+++++++.+|||||........ ++|++|..+..|......+..|.+|++|++++++++||+|||.+
T Consensus 53 ~~~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~ 132 (482)
T KOG0379|consen 53 VLGVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTD 132 (482)
T ss_pred cCCCCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEcccc
Confidence 4678999999999999999999999987554444 59999999999999999999999999999999999999999998
Q ss_pred C-CcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCC
Q 006334 98 G-YKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGD 176 (650)
Q Consensus 98 ~-~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~ 176 (650)
. ...+++++.||+.+++|+.+...+.+|.+|.+|++++++ ++||||||.+.. ...++++|+||+++.+|.++...+.
T Consensus 133 ~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g-~~l~vfGG~~~~-~~~~ndl~i~d~~~~~W~~~~~~g~ 210 (482)
T KOG0379|consen 133 KKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVG-TKLVVFGGIGGT-GDSLNDLHIYDLETSTWSELDTQGE 210 (482)
T ss_pred CCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEEC-CEEEEECCccCc-ccceeeeeeeccccccceecccCCC
Confidence 5 555899999999999999999988999999999999995 999999999543 3389999999999999999999999
Q ss_pred CCCCCCcceeeeecCEEEEEeccC-CCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCC--c
Q 006334 177 IPVPRDSHSSNVIANRLFVYGGDC-GDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDK--H 253 (650)
Q Consensus 177 lP~~R~~hs~v~~~~~Iyv~GG~~-~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~--~ 253 (650)
.|.||++|++++++++++++||.+ ...+++++|.||+.+.+|..+...+..|.+|+.|++++.+++++|+||.... .
T Consensus 211 ~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~~~~~ 290 (482)
T KOG0379|consen 211 APSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGGTDPKQE 290 (482)
T ss_pred CCCCCCCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeEEECCEEEEEcCCcccccc
Confidence 999999999999999999999988 7889999999999999999988889999999999999999999999999875 3
Q ss_pred ccCeEEEEECCCCcEEEeecCC-CCCCCcceeEEEEECC----eEEEEcCCCCCCCCCCcEEEEecC
Q 006334 254 YYNDIWILNVSTCSWSQLDTCG-QQPQGRFSHAAVVTGS----DIVIYGGCGEDERPLNELLVLQLG 315 (650)
Q Consensus 254 ~~~dv~~yD~~t~~W~~l~~~~-~~p~~R~~hsav~~~~----~lyV~GG~~~~~~~~~d~~~l~l~ 315 (650)
.+.++|.||+++..|..+...+ ..+.+|..|+++.... .+.++||........++++.+...
T Consensus 291 ~l~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (482)
T KOG0379|consen 291 PLGDLYGLDLETLVWSKVESVGVVRPSPRLGHAAELIDELGKDGLGILGGNQILGERLADVFSLQIK 357 (482)
T ss_pred cccccccccccccceeeeeccccccccccccccceeeccCCccceeeecCccccccchhhccccccc
Confidence 6899999999999999999876 6788999998888743 356667755555566666655554
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=302.29 Aligned_cols=253 Identities=25% Similarity=0.394 Sum_probs=205.3
Q ss_pred CCCcEEEeecC-CCCCCCCcceEEEEECCEEEEEcccCCC--cCcCeEEEEECCCCcEEeeecCCCCCCC-CcccEEEEE
Q 006334 61 DTMVWSTLATT-GQGPGPRDSHSAILWGHKMIVFGGTNGY--KKVNDLHILDLESKEWMRPECRGAPPSP-RESHTATLV 136 (650)
Q Consensus 61 ~t~sW~~l~~~-g~~P~pR~~hsa~~~~~~lyVfGG~~~~--~~~ndv~~yD~~t~~W~~l~~~~~~P~~-R~~hs~~~~ 136 (650)
....|..+... +..|.||..|++++++++|||+||.... ...+++|+||+.+++|+.+...+..|.. +.+|+++++
T Consensus 5 ~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~ 84 (341)
T PLN02153 5 LQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV 84 (341)
T ss_pred cCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE
Confidence 46679999764 3458999999999999999999998542 3468999999999999987543333332 346777777
Q ss_pred cCCEEEEEccccCCCCcccceEEEEecCCCceeecccc--CCCCCCCCcceeeeecCEEEEEeccCCC------CccCeE
Q 006334 137 GDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVK--GDIPVPRDSHSSNVIANRLFVYGGDCGD------QYHGDI 208 (650)
Q Consensus 137 ~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~--~~lP~~R~~hs~v~~~~~Iyv~GG~~~~------~~~n~v 208 (650)
+++||||||... ...++++++||+.+++|+.+... ...|.+|..|++++++++|||+||.... ..++++
T Consensus 85 -~~~iyv~GG~~~--~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v 161 (341)
T PLN02153 85 -GTKLYIFGGRDE--KREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTI 161 (341)
T ss_pred -CCEEEEECCCCC--CCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceE
Confidence 699999999853 34578999999999999987622 1237899999999999999999997643 245789
Q ss_pred EEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCC--------cccCeEEEEECCCCcEEEeecCCCCCCC
Q 006334 209 DMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDK--------HYYNDIWILNVSTCSWSQLDTCGQQPQG 280 (650)
Q Consensus 209 ~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~--------~~~~dv~~yD~~t~~W~~l~~~~~~p~~ 280 (650)
++||+.+++|+.++..+..|.+|.+|++++++++|||+||.... ...+++++||+.+++|+.++..+..|.+
T Consensus 162 ~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~ 241 (341)
T PLN02153 162 EAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSA 241 (341)
T ss_pred EEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCC
Confidence 99999999999998665566889999999999999999997521 2367899999999999999877778999
Q ss_pred cceeEEEEECCeEEEEcCCCCC--------CCCCCcEEEEecCC
Q 006334 281 RFSHAAVVTGSDIVIYGGCGED--------ERPLNELLVLQLGA 316 (650)
Q Consensus 281 R~~hsav~~~~~lyV~GG~~~~--------~~~~~d~~~l~l~~ 316 (650)
|..|++++++++||||||.... ....++++.||+..
T Consensus 242 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~ 285 (341)
T PLN02153 242 RSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTET 285 (341)
T ss_pred cceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCc
Confidence 9999999999999999997421 23457899999873
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-34 Score=322.84 Aligned_cols=244 Identities=16% Similarity=0.268 Sum_probs=209.6
Q ss_pred EEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccC-CCcCcCeEEEEECCCCcEEe
Q 006334 39 AVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTN-GYKKVNDLHILDLESKEWMR 117 (650)
Q Consensus 39 ~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~-~~~~~ndv~~yD~~t~~W~~ 117 (650)
.|++.||.. ......+++||+.+++|..++.+ |.+|..+++++++++|||+||.+ +...++++++||+.+++|..
T Consensus 259 ~l~~~~g~~-~~~~~~v~~yd~~~~~W~~l~~m---p~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~ 334 (557)
T PHA02713 259 CLVCHDTKY-NVCNPCILVYNINTMEYSVISTI---PNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVE 334 (557)
T ss_pred EEEEecCcc-ccCCCCEEEEeCCCCeEEECCCC---CccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEee
Confidence 455665521 12335789999999999999877 77899999999999999999986 34457999999999999998
Q ss_pred eecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeeecCEEEEEe
Q 006334 118 PECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYG 197 (650)
Q Consensus 118 l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~G 197 (650)
+ .++|.+|..++++++ +++||++||.+. ...++++++||+.+++|+.++ ++|.+|..+++++++++||++|
T Consensus 335 ~---~~m~~~R~~~~~~~~-~g~IYviGG~~~--~~~~~sve~Ydp~~~~W~~~~---~mp~~r~~~~~~~~~g~IYviG 405 (557)
T PHA02713 335 L---PPMIKNRCRFSLAVI-DDTIYAIGGQNG--TNVERTIECYTMGDDKWKMLP---DMPIALSSYGMCVLDQYIYIIG 405 (557)
T ss_pred C---CCCcchhhceeEEEE-CCEEEEECCcCC--CCCCceEEEEECCCCeEEECC---CCCcccccccEEEECCEEEEEe
Confidence 7 678999999999888 699999999842 345789999999999999877 8999999999999999999999
Q ss_pred ccCCC------------------CccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcc-cCeE
Q 006334 198 GDCGD------------------QYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHY-YNDI 258 (650)
Q Consensus 198 G~~~~------------------~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~-~~dv 258 (650)
|.++. ..++++++||+.+++|+.++ +++.+|..+++++++++||++||.++... .+.+
T Consensus 406 G~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~---~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~v 482 (557)
T PHA02713 406 GRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLP---NFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCI 482 (557)
T ss_pred CCCcccccccccccccccccccccccceEEEECCCCCeEeecC---CCCcccccCcEEEECCEEEEEeCCCCCCccceeE
Confidence 97542 13678999999999999988 78899999999999999999999875433 3468
Q ss_pred EEEECCC-CcEEEeecCCCCCCCcceeEEEEECCeEEEEcCCCC
Q 006334 259 WILNVST-CSWSQLDTCGQQPQGRFSHAAVVTGSDIVIYGGCGE 301 (650)
Q Consensus 259 ~~yD~~t-~~W~~l~~~~~~p~~R~~hsav~~~~~lyV~GG~~~ 301 (650)
++||+++ ++|+.++. +|.+|..+++++++++||++||.+.
T Consensus 483 e~Ydp~~~~~W~~~~~---m~~~r~~~~~~~~~~~iyv~Gg~~~ 523 (557)
T PHA02713 483 FRYNTNTYNGWELITT---TESRLSALHTILHDNTIMMLHCYES 523 (557)
T ss_pred EEecCCCCCCeeEccc---cCcccccceeEEECCEEEEEeeecc
Confidence 9999999 89999874 8889999999999999999999754
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=324.68 Aligned_cols=247 Identities=13% Similarity=0.147 Sum_probs=215.5
Q ss_pred CCcCCCeEEeeecCCCCCCCcceeEEEEECCEEEEEccCC-CCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE
Q 006334 8 NAKRAAMWLYPKVLGFNPPERWGHSACYSHGAVYIFGGCC-GGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW 86 (650)
Q Consensus 8 ~~~~~~~W~~~~~~g~~P~~R~ghs~v~~~~~IyvfGG~~-~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~ 86 (650)
+++.+..|..+. ..|.+|.+|+++++++.||++||.. .....+++++||+.++.|..++++ |.+|..++++++
T Consensus 277 yd~~~~~W~~l~---~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m---~~~R~~~~~~~~ 350 (557)
T PHA02713 277 YNINTMEYSVIS---TIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPM---IKNRCRFSLAVI 350 (557)
T ss_pred EeCCCCeEEECC---CCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCC---cchhhceeEEEE
Confidence 566778898543 4678899999999999999999975 345678999999999999999887 789999999999
Q ss_pred CCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCC---------------
Q 006334 87 GHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGE--------------- 151 (650)
Q Consensus 87 ~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~--------------- 151 (650)
+++||++||.++...++++++||+.+++|+.+ .++|.+|..++++++ +++||++||.+...
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~---~~mp~~r~~~~~~~~-~g~IYviGG~~~~~~~~~~~~~~~~~~~~ 426 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKML---PDMPIALSSYGMCVL-DQYIYIIGGRTEHIDYTSVHHMNSIDMEE 426 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEEC---CCCCcccccccEEEE-CCEEEEEeCCCcccccccccccccccccc
Confidence 99999999998777789999999999999997 678999999998887 69999999985211
Q ss_pred -CcccceEEEEecCCCceeeccccCCCCCCCCcceeeeecCEEEEEeccCCCC-ccCeEEEEECCC-CcEEEeeecCCCC
Q 006334 152 -ANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQ-YHGDIDMLDMNS-LTWSRLAIIGSSP 228 (650)
Q Consensus 152 -~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~~~-~~n~v~~yd~~t-~~W~~i~~~g~~P 228 (650)
...++.+++||+.+++|+.+. +++.+|..+++++++++||++||.++.. ..+.+++||+++ ++|+.++ ++|
T Consensus 427 ~~~~~~~ve~YDP~td~W~~v~---~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~---~m~ 500 (557)
T PHA02713 427 DTHSSNKVIRYDTVNNIWETLP---NFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELIT---TTE 500 (557)
T ss_pred cccccceEEEECCCCCeEeecC---CCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcc---ccC
Confidence 113678999999999999877 8999999999999999999999976543 335689999999 8999988 889
Q ss_pred CcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCcEEEeec
Q 006334 229 GVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLDT 273 (650)
Q Consensus 229 ~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~~ 273 (650)
.+|..+.+++++++||++||+++. ..+.+||+.+++|+.+..
T Consensus 501 ~~r~~~~~~~~~~~iyv~Gg~~~~---~~~e~yd~~~~~W~~~~~ 542 (557)
T PHA02713 501 SRLSALHTILHDNTIMMLHCYESY---MLQDTFNVYTYEWNHICH 542 (557)
T ss_pred cccccceeEEECCEEEEEeeecce---eehhhcCcccccccchhh
Confidence 999999999999999999998763 479999999999998864
|
|
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-33 Score=300.93 Aligned_cols=276 Identities=20% Similarity=0.328 Sum_probs=215.9
Q ss_pred CCCCCCcceeEEEEECCEEEEEccCCCCcccceEEEEECC--CCcEEEeecCCCCC-CCCcceEEEEECCEEEEEcccCC
Q 006334 22 GFNPPERWGHSACYSHGAVYIFGGCCGGLHFGDVLMLNLD--TMVWSTLATTGQGP-GPRDSHSAILWGHKMIVFGGTNG 98 (650)
Q Consensus 22 g~~P~~R~ghs~v~~~~~IyvfGG~~~~~~~~dv~~yD~~--t~sW~~l~~~g~~P-~pR~~hsa~~~~~~lyVfGG~~~ 98 (650)
...|.+|..+++++++++|||+||... +.+|+||+. ++.|..++.+ | .+|.+++++.++++|||+||++.
T Consensus 23 ~~lP~~~~~~~~~~~~~~iyv~gG~~~----~~~~~~d~~~~~~~W~~l~~~---p~~~r~~~~~v~~~~~IYV~GG~~~ 95 (376)
T PRK14131 23 PDLPVPFKNGTGAIDNNTVYVGLGSAG----TSWYKLDLNAPSKGWTKIAAF---PGGPREQAVAAFIDGKLYVFGGIGK 95 (376)
T ss_pred CCCCcCccCCeEEEECCEEEEEeCCCC----CeEEEEECCCCCCCeEECCcC---CCCCcccceEEEECCEEEEEcCCCC
Confidence 346778888889999999999999743 458999986 4789998766 4 47999999999999999999864
Q ss_pred ------CcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCC---------------------
Q 006334 99 ------YKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGE--------------------- 151 (650)
Q Consensus 99 ------~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~--------------------- 151 (650)
...++++|+||+.+++|+.+.. ..|.++.+|+++++.+++||++||.....
T Consensus 96 ~~~~~~~~~~~~v~~YD~~~n~W~~~~~--~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i 173 (376)
T PRK14131 96 TNSEGSPQVFDDVYKYDPKTNSWQKLDT--RSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKI 173 (376)
T ss_pred CCCCCceeEcccEEEEeCCCCEEEeCCC--CCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhh
Confidence 1236899999999999999732 34667778887774589999999974210
Q ss_pred -----------CcccceEEEEecCCCceeeccccCCCCC-CCCcceeeeecCEEEEEeccCCC-CccCeEE--EEECCCC
Q 006334 152 -----------ANYLNDLHVLDLKTMRWASPAVKGDIPV-PRDSHSSNVIANRLFVYGGDCGD-QYHGDID--MLDMNSL 216 (650)
Q Consensus 152 -----------~~~~~dv~~yd~~t~~Wt~i~~~~~lP~-~R~~hs~v~~~~~Iyv~GG~~~~-~~~n~v~--~yd~~t~ 216 (650)
....+++++||+.+++|+.+. ++|. +|..|+++.++++|||+||.... ....+++ .||++++
T Consensus 174 ~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~---~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~ 250 (376)
T PRK14131 174 NDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAG---ESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNL 250 (376)
T ss_pred HHHHhcCChhhcCcCceEEEEECCCCeeeECC---cCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCc
Confidence 012478999999999999876 7775 78889999999999999996432 2334444 4577899
Q ss_pred cEEEeeecCCCCCccc--------ceEEEEECCEEEEEeccCCCc--------------c---cCeEEEEECCCCcEEEe
Q 006334 217 TWSRLAIIGSSPGVRA--------GHAAINIGTKVYIIGGVGDKH--------------Y---YNDIWILNVSTCSWSQL 271 (650)
Q Consensus 217 ~W~~i~~~g~~P~~R~--------~~s~v~~~~~IyI~GG~~~~~--------------~---~~dv~~yD~~t~~W~~l 271 (650)
+|+.++ ++|.+|. .+.+++++++|||+||.+... . ...+++||+++++|+.+
T Consensus 251 ~W~~~~---~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~ 327 (376)
T PRK14131 251 KWQKLP---DLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKV 327 (376)
T ss_pred ceeecC---CCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCccccc
Confidence 999988 5555442 334677899999999986321 0 12467999999999988
Q ss_pred ecCCCCCCCcceeEEEEECCeEEEEcCCCCCCCCCCcEEEEecC
Q 006334 272 DTCGQQPQGRFSHAAVVTGSDIVIYGGCGEDERPLNELLVLQLG 315 (650)
Q Consensus 272 ~~~~~~p~~R~~hsav~~~~~lyV~GG~~~~~~~~~d~~~l~l~ 315 (650)
. .+|.+|..+++++++++|||+||........+++++++..
T Consensus 328 ~---~lp~~r~~~~av~~~~~iyv~GG~~~~~~~~~~v~~~~~~ 368 (376)
T PRK14131 328 G---ELPQGLAYGVSVSWNNGVLLIGGETAGGKAVSDVTLLSWD 368 (376)
T ss_pred C---cCCCCccceEEEEeCCEEEEEcCCCCCCcEeeeEEEEEEc
Confidence 6 4788999999999999999999987666678888888765
|
|
| >KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=297.14 Aligned_cols=316 Identities=31% Similarity=0.523 Sum_probs=264.5
Q ss_pred CCcCCCeEEeee-cCCCCCCCcceeEEEEECCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE
Q 006334 8 NAKRAAMWLYPK-VLGFNPPERWGHSACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW 86 (650)
Q Consensus 8 ~~~~~~~W~~~~-~~g~~P~~R~ghs~v~~~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~ 86 (650)
..+.--+|..+. .+|..|.+|.||.+++++..|+||||-++ ...+++.+||..+++|..-...|+.|.+-+.|.++..
T Consensus 12 a~~~~~rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNE-GiiDELHvYNTatnqWf~PavrGDiPpgcAA~Gfvcd 90 (830)
T KOG4152|consen 12 AEKNVVRWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNE-GIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCD 90 (830)
T ss_pred hhhcccceEEEecccCCCCCccccchheeeeeeEEEecCCcc-cchhhhhhhccccceeecchhcCCCCCchhhcceEec
Confidence 344457898775 78999999999999999999999999544 4578999999999999988888999999999999999
Q ss_pred CCEEEEEcccCCCc-CcCeEEEEECCCCcEEeeec----CCCCCCCCcccEEEEEcCCEEEEEccccCCC-------Ccc
Q 006334 87 GHKMIVFGGTNGYK-KVNDLHILDLESKEWMRPEC----RGAPPSPRESHTATLVGDDKMVIFGGSGEGE-------ANY 154 (650)
Q Consensus 87 ~~~lyVfGG~~~~~-~~ndv~~yD~~t~~W~~l~~----~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~-------~~~ 154 (650)
+.+||+|||+..++ ++||+|.+....-.|++++. .+.+|-||.+|+..+++ ++.|+|||..++. ..+
T Consensus 91 GtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~g-nKcYlFGGLaNdseDpknNvPrY 169 (830)
T KOG4152|consen 91 GTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVG-NKCYLFGGLANDSEDPKNNVPRY 169 (830)
T ss_pred CceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEec-cEeEEeccccccccCcccccchh
Confidence 99999999998765 57999888777777887743 45678999999999996 9999999984321 247
Q ss_pred cceEEEEecCCC----ceeeccccCCCCCCCCcceeeee------cCEEEEEeccCCCCccCeEEEEECCCCcEEEeeec
Q 006334 155 LNDLHVLDLKTM----RWASPAVKGDIPVPRDSHSSNVI------ANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAII 224 (650)
Q Consensus 155 ~~dv~~yd~~t~----~Wt~i~~~~~lP~~R~~hs~v~~------~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~ 224 (650)
+||+|++++.-+ .|......+.+|.+|..|+++.+ ..+||||||+++ ..+.|+|.+|+++.+|.+....
T Consensus 170 LnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G-~RLgDLW~Ldl~Tl~W~kp~~~ 248 (830)
T KOG4152|consen 170 LNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSG-CRLGDLWTLDLDTLTWNKPSLS 248 (830)
T ss_pred hcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEccccc-ccccceeEEecceeeccccccc
Confidence 999999998744 59988888999999999999988 247999999876 5678999999999999999999
Q ss_pred CCCCCcccceEEEEECCEEEEEeccCC--------------CcccCeEEEEECCCCcEEEeecC----CCCCCCcceeEE
Q 006334 225 GSSPGVRAGHAAINIGTKVYIIGGVGD--------------KHYYNDIWILNVSTCSWSQLDTC----GQQPQGRFSHAA 286 (650)
Q Consensus 225 g~~P~~R~~~s~v~~~~~IyI~GG~~~--------------~~~~~dv~~yD~~t~~W~~l~~~----~~~p~~R~~hsa 286 (650)
|..|.+|+-|+++.+++++|||||+-. -...+.+-++++.+..|+.+-.. ...|.+|.+|++
T Consensus 249 G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCA 328 (830)
T KOG4152|consen 249 GVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCA 328 (830)
T ss_pred CCCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeecccccccccccccccee
Confidence 999999999999999999999999731 13567788999999999987532 127899999999
Q ss_pred EEECCeEEEEcCCCCC------CCCCCcEEEEecCCCCCCCccccc
Q 006334 287 VVTGSDIVIYGGCGED------ERPLNELLVLQLGAEHPNYRYNIS 326 (650)
Q Consensus 287 v~~~~~lyV~GG~~~~------~~~~~d~~~l~l~~~~~~~~~~~~ 326 (650)
++++.+|||.-|.+.. ..=+.|+|.+|.....+..+..+-
T Consensus 329 vAigtRlYiWSGRDGYrKAwnnQVCCkDlWyLdTekPp~P~~VQL~ 374 (830)
T KOG4152|consen 329 VAIGTRLYIWSGRDGYRKAWNNQVCCKDLWYLDTEKPPPPARVQLV 374 (830)
T ss_pred EEeccEEEEEeccchhhHhhccccchhhhhhhcccCCCCCceEEEE
Confidence 9999999999986532 234678999988766665554443
|
|
| >KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=274.98 Aligned_cols=240 Identities=30% Similarity=0.561 Sum_probs=213.8
Q ss_pred cCCCeEEeeec----------CCCCCCCcceeEEEEECCEEEEEccCCC-CcccceEEEEECCCCcEEEeecCCCCCCCC
Q 006334 10 KRAAMWLYPKV----------LGFNPPERWGHSACYSHGAVYIFGGCCG-GLHFGDVLMLNLDTMVWSTLATTGQGPGPR 78 (650)
Q Consensus 10 ~~~~~W~~~~~----------~g~~P~~R~ghs~v~~~~~IyvfGG~~~-~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR 78 (650)
.-.-+|.+.+. ....|-.|+||+.+.+++++||+||.+. ...-|-+|.||+.++.|.+....+..|.+|
T Consensus 51 a~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaR 130 (392)
T KOG4693|consen 51 AENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGAR 130 (392)
T ss_pred ccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCccCcccccceeeeeccccccccccceeeecCCcc
Confidence 34568887653 2235778999999999999999999876 556788999999999999999999999999
Q ss_pred cceEEEEECCEEEEEcccCC--CcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCC------
Q 006334 79 DSHSAILWGHKMIVFGGTNG--YKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEG------ 150 (650)
Q Consensus 79 ~~hsa~~~~~~lyVfGG~~~--~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~------ 150 (650)
.+|+++++++.+|||||+.. ...++|++.+|..|.+|+.+.+.+.+|.=|.+|+++++ ++.+|||||+.+.
T Consensus 131 DGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~-~~~MYiFGGR~D~~gpfHs 209 (392)
T KOG4693|consen 131 DGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVI-DGMMYIFGGRSDESGPFHS 209 (392)
T ss_pred CCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhhhhhhhhhc-cceEEEeccccccCCCccc
Confidence 99999999999999999964 34589999999999999999999999999999999998 5999999999643
Q ss_pred -CCcccceEEEEecCCCceeeccccCCCCCCCCcceeeeecCEEEEEeccCCC--CccCeEEEEECCCCcEEEeeecCCC
Q 006334 151 -EANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGD--QYHGDIDMLDMNSLTWSRLAIIGSS 227 (650)
Q Consensus 151 -~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~~--~~~n~v~~yd~~t~~W~~i~~~g~~ 227 (650)
...+.+.+..+|+.|..|......+-.|..|..|++-+++++||+|||+.+. .-.+++|+||+.+..|..|...|.-
T Consensus 210 ~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~ 289 (392)
T KOG4693|consen 210 IHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKY 289 (392)
T ss_pred hhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEecccchhhhhhhcceeecccccchheeeeccCCC
Confidence 2346788889999999999988788889999999999999999999998764 5679999999999999999999999
Q ss_pred CCcccceEEEEECCEEEEEeccC
Q 006334 228 PGVRAGHAAINIGTKVYIIGGVG 250 (650)
Q Consensus 228 P~~R~~~s~v~~~~~IyI~GG~~ 250 (650)
|.+|.-+++++.++++|+|||..
T Consensus 290 P~aRRRqC~~v~g~kv~LFGGTs 312 (392)
T KOG4693|consen 290 PSARRRQCSVVSGGKVYLFGGTS 312 (392)
T ss_pred CCcccceeEEEECCEEEEecCCC
Confidence 99999999999999999999964
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-32 Score=308.24 Aligned_cols=232 Identities=17% Similarity=0.341 Sum_probs=204.7
Q ss_pred cceeEEEEECCEEEEEccCCCC-cccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEE
Q 006334 28 RWGHSACYSHGAVYIFGGCCGG-LHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLH 106 (650)
Q Consensus 28 R~ghs~v~~~~~IyvfGG~~~~-~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~ 106 (650)
+..|+++++++.||++||.... ...+++++||+.+++|..++.+ |.+|.+|++++++++||++||.++....++++
T Consensus 285 ~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~---~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~ 361 (534)
T PHA03098 285 VYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPEL---IYPRKNPGVTVFNNRIYVIGGIYNSISLNTVE 361 (534)
T ss_pred cccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCC---CcccccceEEEECCEEEEEeCCCCCEecceEE
Confidence 4557889999999999998753 3567999999999999988776 77899999999999999999998777789999
Q ss_pred EEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCccee
Q 006334 107 ILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSS 186 (650)
Q Consensus 107 ~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~ 186 (650)
+||+.+++|+.+ .++|.+|..|+++.+ +++||++||... ....++++++||+.+++|+.+. ++|.+|..|++
T Consensus 362 ~yd~~~~~W~~~---~~lp~~r~~~~~~~~-~~~iYv~GG~~~-~~~~~~~v~~yd~~t~~W~~~~---~~p~~r~~~~~ 433 (534)
T PHA03098 362 SWKPGESKWREE---PPLIFPRYNPCVVNV-NNLIYVIGGISK-NDELLKTVECFSLNTNKWSKGS---PLPISHYGGCA 433 (534)
T ss_pred EEcCCCCceeeC---CCcCcCCccceEEEE-CCEEEEECCcCC-CCcccceEEEEeCCCCeeeecC---CCCccccCceE
Confidence 999999999986 578899999999877 699999999743 2345789999999999999877 88999999999
Q ss_pred eeecCEEEEEeccCCCC---ccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEEC
Q 006334 187 NVIANRLFVYGGDCGDQ---YHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNV 263 (650)
Q Consensus 187 v~~~~~Iyv~GG~~~~~---~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~ 263 (650)
+.++++||++||..... ..+.+++||+.+++|+.++ +++.+|..++++.++++|||+||.......+++++||+
T Consensus 434 ~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~ 510 (534)
T PHA03098 434 IYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELS---SLNFPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDD 510 (534)
T ss_pred EEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCC---CCCcccccceEEEECCEEEEEcCCcCCcccceeEEEeC
Confidence 99999999999975432 3577999999999999987 67788999999999999999999987777889999999
Q ss_pred CCCcEEEeec
Q 006334 264 STCSWSQLDT 273 (650)
Q Consensus 264 ~t~~W~~l~~ 273 (650)
++++|+.+..
T Consensus 511 ~~~~W~~~~~ 520 (534)
T PHA03098 511 KTNTWTLFCK 520 (534)
T ss_pred CCCEEEecCC
Confidence 9999999864
|
|
| >KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=298.58 Aligned_cols=244 Identities=40% Similarity=0.743 Sum_probs=222.8
Q ss_pred cCCCCCCCCcceEEEEECCEEEEEcccCCCcCcC--eEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccc
Q 006334 70 TTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVN--DLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGS 147 (650)
Q Consensus 70 ~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~n--dv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~ 147 (650)
..+..|.+|+.|+++.+++++|||||........ |+|+||..+..|....+++..|.+|++|.++++ +++||+|||.
T Consensus 53 ~~~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~-~~~l~lfGG~ 131 (482)
T KOG0379|consen 53 VLGVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAV-GDKLYLFGGT 131 (482)
T ss_pred cCCCCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEE-CCeEEEEccc
Confidence 4556689999999999999999999997665544 599999999999999999999999999999999 5999999999
Q ss_pred cCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeeecCEEEEEeccCCCC-ccCeEEEEECCCCcEEEeeecCC
Q 006334 148 GEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQ-YHGDIDMLDMNSLTWSRLAIIGS 226 (650)
Q Consensus 148 ~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~~~-~~n~v~~yd~~t~~W~~i~~~g~ 226 (650)
.. ....++++++||+.+.+|..+...+..|.+|.+|+++.++++||||||..... ..|++|+||+++.+|.++.+.+.
T Consensus 132 ~~-~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~ 210 (482)
T KOG0379|consen 132 DK-KYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGE 210 (482)
T ss_pred cC-CCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCC
Confidence 64 34558999999999999999998889999999999999999999999987766 89999999999999999999999
Q ss_pred CCCcccceEEEEECCEEEEEeccC-CCcccCeEEEEECCCCcEEEeecCCCCCCCcceeEEEEECCeEEEEcCCCCCCC-
Q 006334 227 SPGVRAGHAAINIGTKVYIIGGVG-DKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVTGSDIVIYGGCGEDER- 304 (650)
Q Consensus 227 ~P~~R~~~s~v~~~~~IyI~GG~~-~~~~~~dv~~yD~~t~~W~~l~~~~~~p~~R~~hsav~~~~~lyV~GG~~~~~~- 304 (650)
.|.+|++|++++++++++|+||.+ ...+++|+|+||+.+..|..+...+..|.+|++|++++.++.++|+||......
T Consensus 211 ~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~~~~~ 290 (482)
T KOG0379|consen 211 APSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGGTDPKQE 290 (482)
T ss_pred CCCCCCCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeEEECCEEEEEcCCcccccc
Confidence 999999999999999999999998 788999999999999999998888899999999999999999999999876533
Q ss_pred CCCcEEEEecC
Q 006334 305 PLNELLVLQLG 315 (650)
Q Consensus 305 ~~~d~~~l~l~ 315 (650)
.+.++|.+++.
T Consensus 291 ~l~~~~~l~~~ 301 (482)
T KOG0379|consen 291 PLGDLYGLDLE 301 (482)
T ss_pred ccccccccccc
Confidence 68888888886
|
|
| >KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-32 Score=280.11 Aligned_cols=251 Identities=27% Similarity=0.525 Sum_probs=216.2
Q ss_pred cCCCCCCCcceeEEEEE--CCEEEEEccCC--C--CcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEEC-CEEEE
Q 006334 20 VLGFNPPERWGHSACYS--HGAVYIFGGCC--G--GLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWG-HKMIV 92 (650)
Q Consensus 20 ~~g~~P~~R~ghs~v~~--~~~IyvfGG~~--~--~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~-~~lyV 92 (650)
..-.+|.||...++++. .+.|++|||.- + ...+||+|.||..+++|+.+... +.|.||.+|.++++. |.+||
T Consensus 59 ~~~~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~sp-n~P~pRsshq~va~~s~~l~~ 137 (521)
T KOG1230|consen 59 TSVPPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSP-NAPPPRSSHQAVAVPSNILWL 137 (521)
T ss_pred ccCCCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccC-CCcCCCccceeEEeccCeEEE
Confidence 44457899999999875 47999999953 2 34579999999999999998655 458999999998885 89999
Q ss_pred EcccCCCc------CcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCC--CcccceEEEEecC
Q 006334 93 FGGTNGYK------KVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGE--ANYLNDLHVLDLK 164 (650)
Q Consensus 93 fGG~~~~~------~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~--~~~~~dv~~yd~~ 164 (650)
|||--.+. .+.|+|.||+.+++|++++..+ -|.+|.+|-|+++ +.+|+||||..+.+ -.++||+|+||++
T Consensus 138 fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g-~PS~RSGHRMvaw-K~~lilFGGFhd~nr~y~YyNDvy~FdLd 215 (521)
T KOG1230|consen 138 FGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG-GPSPRSGHRMVAW-KRQLILFGGFHDSNRDYIYYNDVYAFDLD 215 (521)
T ss_pred eccccCCcchhhhhhhhheeeeeeccchheeeccCC-CCCCCccceeEEe-eeeEEEEcceecCCCceEEeeeeEEEecc
Confidence 99974321 2799999999999999997764 7899999999998 69999999996544 3479999999999
Q ss_pred CCceeeccccCCCCCCCCcceeeee-cCEEEEEeccCC---------CCccCeEEEEECCC-----CcEEEeeecCCCCC
Q 006334 165 TMRWASPAVKGDIPVPRDSHSSNVI-ANRLFVYGGDCG---------DQYHGDIDMLDMNS-----LTWSRLAIIGSSPG 229 (650)
Q Consensus 165 t~~Wt~i~~~~~lP~~R~~hs~v~~-~~~Iyv~GG~~~---------~~~~n~v~~yd~~t-----~~W~~i~~~g~~P~ 229 (650)
+-+|++++..+..|.+|.+|++.+. .+.|||+|||+. ...++++|.+++++ ..|+.+...+..|.
T Consensus 216 tykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPs 295 (521)
T KOG1230|consen 216 TYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPS 295 (521)
T ss_pred ceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCC
Confidence 9999999988888999999999988 899999999863 25788999999998 88999999999999
Q ss_pred cccceEEEEECC-EEEEEeccCC---------CcccCeEEEEECCCCcEEEeec
Q 006334 230 VRAGHAAINIGT-KVYIIGGVGD---------KHYYNDIWILNVSTCSWSQLDT 273 (650)
Q Consensus 230 ~R~~~s~v~~~~-~IyI~GG~~~---------~~~~~dv~~yD~~t~~W~~l~~ 273 (650)
+|.++++++..+ +-|.|||..+ +.+++|+|.||+..++|.....
T Consensus 296 pRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~ql 349 (521)
T KOG1230|consen 296 PRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEGQL 349 (521)
T ss_pred CCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhheecccchhhHhhh
Confidence 999999998875 9999999864 3578999999999999988643
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-30 Score=296.33 Aligned_cols=256 Identities=20% Similarity=0.309 Sum_probs=213.0
Q ss_pred CEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCc-CcCeEEEEECCCCcEE
Q 006334 38 GAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYK-KVNDLHILDLESKEWM 116 (650)
Q Consensus 38 ~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~-~~ndv~~yD~~t~~W~ 116 (650)
..+++.||.. .....+..|+...++|..+... | .+..|++++++++|||+||.+... ..++++.||+.+++|.
T Consensus 251 ~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~ 324 (534)
T PHA03098 251 SIIYIHITMS--IFTYNYITNYSPLSEINTIIDI---H-YVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWN 324 (534)
T ss_pred cceEeecccc--hhhceeeecchhhhhcccccCc---c-ccccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeee
Confidence 4456656644 2334566788888889887543 3 245678899999999999997654 4679999999999998
Q ss_pred eeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeeecCEEEEE
Q 006334 117 RPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVY 196 (650)
Q Consensus 117 ~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~ 196 (650)
.+ ..+|.+|..|+++++ +++||++||.+ ....++++++||+.+++|+.+. ++|.+|..|+++.++++||++
T Consensus 325 ~~---~~~~~~R~~~~~~~~-~~~lyv~GG~~--~~~~~~~v~~yd~~~~~W~~~~---~lp~~r~~~~~~~~~~~iYv~ 395 (534)
T PHA03098 325 KV---PELIYPRKNPGVTVF-NNRIYVIGGIY--NSISLNTVESWKPGESKWREEP---PLIFPRYNPCVVNVNNLIYVI 395 (534)
T ss_pred EC---CCCCcccccceEEEE-CCEEEEEeCCC--CCEecceEEEEcCCCCceeeCC---CcCcCCccceEEEECCEEEEE
Confidence 87 577889999999888 69999999985 3456889999999999999877 899999999999999999999
Q ss_pred eccC-CCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCc---ccCeEEEEECCCCcEEEee
Q 006334 197 GGDC-GDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKH---YYNDIWILNVSTCSWSQLD 272 (650)
Q Consensus 197 GG~~-~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~---~~~dv~~yD~~t~~W~~l~ 272 (650)
||.. ....++++++||+.+++|+.++ ++|.+|.+|+++.++++|||+||..... .++++++||+.+++|+.++
T Consensus 396 GG~~~~~~~~~~v~~yd~~t~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~ 472 (534)
T PHA03098 396 GGISKNDELLKTVECFSLNTNKWSKGS---PLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELS 472 (534)
T ss_pred CCcCCCCcccceEEEEeCCCCeeeecC---CCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCC
Confidence 9964 3345789999999999999987 7888999999999999999999986432 3677999999999999986
Q ss_pred cCCCCCCCcceeEEEEECCeEEEEcCCCCCCCCCCcEEEEecC
Q 006334 273 TCGQQPQGRFSHAAVVTGSDIVIYGGCGEDERPLNELLVLQLG 315 (650)
Q Consensus 273 ~~~~~p~~R~~hsav~~~~~lyV~GG~~~~~~~~~d~~~l~l~ 315 (650)
. ++.+|.+++++..+++|||+||.... ...++++.||..
T Consensus 473 ~---~~~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~v~~yd~~ 511 (534)
T PHA03098 473 S---LNFPRINASLCIFNNKIYVVGGDKYE-YYINEIEVYDDK 511 (534)
T ss_pred C---CCcccccceEEEECCEEEEEcCCcCC-cccceeEEEeCC
Confidence 4 67789999999999999999998643 246788888876
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=284.06 Aligned_cols=212 Identities=20% Similarity=0.315 Sum_probs=188.6
Q ss_pred EEEECCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEECCC
Q 006334 33 ACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLES 112 (650)
Q Consensus 33 ~v~~~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t 112 (650)
.+..++.||++||.++....+++++||+.+++|..++.+ |.+|..+++++++++||++||.++ .+.+++||+.+
T Consensus 267 ~~~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m---~~~r~~~~~v~~~~~iYviGG~~~---~~sve~ydp~~ 340 (480)
T PHA02790 267 STHVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPM---NSPRLYASGVPANNKLYVVGGLPN---PTSVERWFHGD 340 (480)
T ss_pred eEEECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCC---CchhhcceEEEECCEEEEECCcCC---CCceEEEECCC
Confidence 345899999999987666778999999999999999887 778999999999999999999854 26799999999
Q ss_pred CcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeeecCE
Q 006334 113 KEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANR 192 (650)
Q Consensus 113 ~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~~~~ 192 (650)
++|..+ .++|.+|..++++++ +++||++||.+.. .+.+++||+.+++|+.++ +++.+|..+++++++++
T Consensus 341 n~W~~~---~~l~~~r~~~~~~~~-~g~IYviGG~~~~----~~~ve~ydp~~~~W~~~~---~m~~~r~~~~~~~~~~~ 409 (480)
T PHA02790 341 AAWVNM---PSLLKPRCNPAVASI-NNVIYVIGGHSET----DTTTEYLLPNHDQWQFGP---STYYPHYKSCALVFGRR 409 (480)
T ss_pred CeEEEC---CCCCCCCcccEEEEE-CCEEEEecCcCCC----CccEEEEeCCCCEEEeCC---CCCCccccceEEEECCE
Confidence 999987 678899999998888 6999999998421 367899999999999877 89999999999999999
Q ss_pred EEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCcEEEee
Q 006334 193 LFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLD 272 (650)
Q Consensus 193 Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~ 272 (650)
||++||. +++||+++++|+.++ +++.+|..+++++++++||++||.+.....+.+++||+++++|+...
T Consensus 410 IYv~GG~--------~e~ydp~~~~W~~~~---~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~~ 478 (480)
T PHA02790 410 LFLVGRN--------AEFYCESSNTWTLID---DPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNIWD 478 (480)
T ss_pred EEEECCc--------eEEecCCCCcEeEcC---CCCCCccccEEEEECCEEEEECCcCCCcccceEEEEECCCCeEEecC
Confidence 9999983 689999999999988 78889999999999999999999876666788999999999998753
|
|
| >KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-30 Score=265.65 Aligned_cols=241 Identities=27% Similarity=0.504 Sum_probs=206.3
Q ss_pred CCCCCCcceEEEEE--CCEEEEEccc--CCCc--CcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEcc
Q 006334 73 QGPGPRDSHSAILW--GHKMIVFGGT--NGYK--KVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGG 146 (650)
Q Consensus 73 ~~P~pR~~hsa~~~--~~~lyVfGG~--~~~~--~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG 146 (650)
.+|.||.+.++++. .+.|++|||- ++.. .+||+|.||.++++|+++.. ...|.||..|.++++..|.||||||
T Consensus 62 ~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~s-pn~P~pRsshq~va~~s~~l~~fGG 140 (521)
T KOG1230|consen 62 PPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVS-PNAPPPRSSHQAVAVPSNILWLFGG 140 (521)
T ss_pred CCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEecc-CCCcCCCccceeEEeccCeEEEecc
Confidence 35899999999886 3689999995 4433 38999999999999999854 4678899999999998799999999
Q ss_pred ccCCCC----cccceEEEEecCCCceeeccccCCCCCCCCcceeeeecCEEEEEeccCCC----CccCeEEEEECCCCcE
Q 006334 147 SGEGEA----NYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGD----QYHGDIDMLDMNSLTW 218 (650)
Q Consensus 147 ~~~~~~----~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~~----~~~n~v~~yd~~t~~W 218 (650)
--.+.+ -...|+|.||+.+++|+.+...+ .|.+|.+|-++++.++|++|||.... .++|+||+||+++.+|
T Consensus 141 EfaSPnq~qF~HYkD~W~fd~~trkweql~~~g-~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW 219 (521)
T KOG1230|consen 141 EFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG-GPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKW 219 (521)
T ss_pred ccCCcchhhhhhhhheeeeeeccchheeeccCC-CCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceee
Confidence 743322 34789999999999999998554 78999999999999999999995432 5799999999999999
Q ss_pred EEeeecCCCCCcccceEEEEE-CCEEEEEeccCC---------CcccCeEEEEECCC-----CcEEEeecCCCCCCCcce
Q 006334 219 SRLAIIGSSPGVRAGHAAINI-GTKVYIIGGVGD---------KHYYNDIWILNVST-----CSWSQLDTCGQQPQGRFS 283 (650)
Q Consensus 219 ~~i~~~g~~P~~R~~~s~v~~-~~~IyI~GG~~~---------~~~~~dv~~yD~~t-----~~W~~l~~~~~~p~~R~~ 283 (650)
+++.+.+..|.+|++|++.+. .+.|||+||++. +...+|+|.+++++ -.|..+...+..|.+|.+
T Consensus 220 ~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsg 299 (521)
T KOG1230|consen 220 SKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSG 299 (521)
T ss_pred eeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCc
Confidence 999988788999999999998 899999999962 45788999999998 679999998889999999
Q ss_pred eEEEEEC-CeEEEEcCCCCC--------CCCCCcEEEEecC
Q 006334 284 HAAVVTG-SDIVIYGGCGED--------ERPLNELLVLQLG 315 (650)
Q Consensus 284 hsav~~~-~~lyV~GG~~~~--------~~~~~d~~~l~l~ 315 (650)
+++++.. ++-+.|||..+- +...||+|.|++.
T Consensus 300 fsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt 340 (521)
T KOG1230|consen 300 FSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLT 340 (521)
T ss_pred eeEEEecCCceEEecceecccccchhhhhhhhhhhhheecc
Confidence 9999985 589999998762 1456889988887
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-29 Score=265.24 Aligned_cols=223 Identities=22% Similarity=0.330 Sum_probs=178.6
Q ss_pred CeEEeeecCCCCCCCcceeEEEEECCEEEEEccCCCCcccceEEEEECCCCcE----EEeecCCCCCCCCcceEEEEECC
Q 006334 13 AMWLYPKVLGFNPPERWGHSACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMVW----STLATTGQGPGPRDSHSAILWGH 88 (650)
Q Consensus 13 ~~W~~~~~~g~~P~~R~ghs~v~~~~~IyvfGG~~~~~~~~dv~~yD~~t~sW----~~l~~~g~~P~pR~~hsa~~~~~ 88 (650)
.+|... +..|.+|..++++++++.||++||.+....++++|+||+.+++| ..++. .|.+|..|+++++++
T Consensus 51 ~~W~~~---~~lp~~r~~~~~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~---lp~~~~~~~~~~~~~ 124 (323)
T TIGR03548 51 LKWVKD---GQLPYEAAYGASVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGN---LPFTFENGSACYKDG 124 (323)
T ss_pred eeEEEc---ccCCccccceEEEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCC---CCcCccCceEEEECC
Confidence 367743 35678898888889999999999998777789999999999998 44444 488999999999999
Q ss_pred EEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCC-CCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCc
Q 006334 89 KMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPP-SPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMR 167 (650)
Q Consensus 89 ~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P-~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~ 167 (650)
+|||+||.......+++++||+.+++|+.+ ..+| .+|..|+++++ +++|||+||.+. ....++++||+.+++
T Consensus 125 ~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~---~~~p~~~r~~~~~~~~-~~~iYv~GG~~~---~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 125 TLYVGGGNRNGKPSNKSYLFNLETQEWFEL---PDFPGEPRVQPVCVKL-QNELYVFGGGSN---IAYTDGYKYSPKKNQ 197 (323)
T ss_pred EEEEEeCcCCCccCceEEEEcCCCCCeeEC---CCCCCCCCCcceEEEE-CCEEEEEcCCCC---ccccceEEEecCCCe
Confidence 999999986666689999999999999997 3445 47888877766 699999999842 234678999999999
Q ss_pred eeeccccC--CCCCCCCcceee-eecCEEEEEeccCCCC--------------------------------ccCeEEEEE
Q 006334 168 WASPAVKG--DIPVPRDSHSSN-VIANRLFVYGGDCGDQ--------------------------------YHGDIDMLD 212 (650)
Q Consensus 168 Wt~i~~~~--~lP~~R~~hs~v-~~~~~Iyv~GG~~~~~--------------------------------~~n~v~~yd 212 (650)
|+.+.... ..|..+..++.+ ..+++||++||.+... +.+++++||
T Consensus 198 W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd 277 (323)
T TIGR03548 198 WQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYN 277 (323)
T ss_pred eEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEE
Confidence 99877322 233334444444 4478999999976421 246899999
Q ss_pred CCCCcEEEeeecCCCC-CcccceEEEEECCEEEEEeccCC
Q 006334 213 MNSLTWSRLAIIGSSP-GVRAGHAAINIGTKVYIIGGVGD 251 (650)
Q Consensus 213 ~~t~~W~~i~~~g~~P-~~R~~~s~v~~~~~IyI~GG~~~ 251 (650)
+.+++|+.++ ++| .+|..++++.++++||++||...
T Consensus 278 ~~~~~W~~~~---~~p~~~r~~~~~~~~~~~iyv~GG~~~ 314 (323)
T TIGR03548 278 VRTGKWKSIG---NSPFFARCGAALLLTGNNIFSINGELK 314 (323)
T ss_pred CCCCeeeEcc---cccccccCchheEEECCEEEEEecccc
Confidence 9999999988 455 58999999999999999999754
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=268.10 Aligned_cols=244 Identities=18% Similarity=0.278 Sum_probs=189.2
Q ss_pred CCeEEeeecCCCCCCCcceeEEEEECCEEEEEccCCC------CcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEE
Q 006334 12 AAMWLYPKVLGFNPPERWGHSACYSHGAVYIFGGCCG------GLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAIL 85 (650)
Q Consensus 12 ~~~W~~~~~~g~~P~~R~ghs~v~~~~~IyvfGG~~~------~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~ 85 (650)
+.+|.... ..+..+|.+|+++.+++.|||+||... ...++++|+||+.+++|+.++.. .|.++.+|++++
T Consensus 61 ~~~W~~l~--~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~--~p~~~~~~~~~~ 136 (376)
T PRK14131 61 SKGWTKIA--AFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTR--SPVGLAGHVAVS 136 (376)
T ss_pred CCCeEECC--cCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCC--CCCcccceEEEE
Confidence 56788543 323358999999999999999999864 13468999999999999998742 366778888776
Q ss_pred -ECCEEEEEcccCCC----------------------------------cCcCeEEEEECCCCcEEeeecCCCCCC-CCc
Q 006334 86 -WGHKMIVFGGTNGY----------------------------------KKVNDLHILDLESKEWMRPECRGAPPS-PRE 129 (650)
Q Consensus 86 -~~~~lyVfGG~~~~----------------------------------~~~ndv~~yD~~t~~W~~l~~~~~~P~-~R~ 129 (650)
.+++|||+||.+.. ...+++++||+.+++|+.+ ..+|. +|.
T Consensus 137 ~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~---~~~p~~~~~ 213 (376)
T PRK14131 137 LHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNA---GESPFLGTA 213 (376)
T ss_pred eeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeEC---CcCCCCCCC
Confidence 79999999998532 1247899999999999986 45664 677
Q ss_pred ccEEEEEcCCEEEEEccccCCCCcccceEE--EEecCCCceeeccccCCCCCCCCc--------ceeeeecCEEEEEecc
Q 006334 130 SHTATLVGDDKMVIFGGSGEGEANYLNDLH--VLDLKTMRWASPAVKGDIPVPRDS--------HSSNVIANRLFVYGGD 199 (650)
Q Consensus 130 ~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~--~yd~~t~~Wt~i~~~~~lP~~R~~--------hs~v~~~~~Iyv~GG~ 199 (650)
.++++.+ +++|||+||.... .....+++ .||+++++|+.+. .+|.+|.. +.+++++++|||+||.
T Consensus 214 ~~a~v~~-~~~iYv~GG~~~~-~~~~~~~~~~~~~~~~~~W~~~~---~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~ 288 (376)
T PRK14131 214 GSAVVIK-GNKLWLINGEIKP-GLRTDAVKQGKFTGNNLKWQKLP---DLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGA 288 (376)
T ss_pred cceEEEE-CCEEEEEeeeECC-CcCChhheEEEecCCCcceeecC---CCCCCCcCCcCCccceEeceeECCEEEEeecc
Confidence 7777766 6999999997432 22234555 4567889999877 77766542 3356789999999996
Q ss_pred CCCC-----------------ccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCC-CcccCeEEEE
Q 006334 200 CGDQ-----------------YHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGD-KHYYNDIWIL 261 (650)
Q Consensus 200 ~~~~-----------------~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~-~~~~~dv~~y 261 (650)
+... ....+++||+++++|+.+. .+|.+|..+++++++++|||+||... ....+++++|
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~---~lp~~r~~~~av~~~~~iyv~GG~~~~~~~~~~v~~~ 365 (376)
T PRK14131 289 NFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVG---ELPQGLAYGVSVSWNNGVLLIGGETAGGKAVSDVTLL 365 (376)
T ss_pred CCCCChhhhhcCCcccccCCcceeehheEEecCCcccccC---cCCCCccceEEEEeCCEEEEEcCCCCCCcEeeeEEEE
Confidence 5211 1135789999999999887 78899999999999999999999864 4678899999
Q ss_pred ECCCCcEEE
Q 006334 262 NVSTCSWSQ 270 (650)
Q Consensus 262 D~~t~~W~~ 270 (650)
+++.+.|..
T Consensus 366 ~~~~~~~~~ 374 (376)
T PRK14131 366 SWDGKKLTV 374 (376)
T ss_pred EEcCCEEEE
Confidence 999888765
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-28 Score=263.37 Aligned_cols=236 Identities=19% Similarity=0.289 Sum_probs=184.0
Q ss_pred CCCeEEeeecCCCCC-CCcceeEEEEECCEEEEEccCCCC------cccceEEEEECCCCcEEEeecCCCCCCCCcceEE
Q 006334 11 RAAMWLYPKVLGFNP-PERWGHSACYSHGAVYIFGGCCGG------LHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSA 83 (650)
Q Consensus 11 ~~~~W~~~~~~g~~P-~~R~ghs~v~~~~~IyvfGG~~~~------~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa 83 (650)
...+|.++. ..| .+|.+|++++++++|||+||.... ..++++|+||+.+++|+.++. ..|.+|.+|++
T Consensus 39 ~~~~W~~l~---~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~--~~p~~~~~~~~ 113 (346)
T TIGR03547 39 PSKGWQKIA---DFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDT--RSPVGLLGASG 113 (346)
T ss_pred CCCCceECC---CCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCC--CCCCcccceeE
Confidence 456788543 344 579999999999999999998532 247899999999999999873 23667888877
Q ss_pred E-EECCEEEEEcccCCCc----------------------------------CcCeEEEEECCCCcEEeeecCCCCCC-C
Q 006334 84 I-LWGHKMIVFGGTNGYK----------------------------------KVNDLHILDLESKEWMRPECRGAPPS-P 127 (650)
Q Consensus 84 ~-~~~~~lyVfGG~~~~~----------------------------------~~ndv~~yD~~t~~W~~l~~~~~~P~-~ 127 (650)
+ +++++||++||.+... .++++++||+.+++|+.+ ..+|. +
T Consensus 114 ~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~---~~~p~~~ 190 (346)
T TIGR03547 114 FSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNL---GENPFLG 190 (346)
T ss_pred EEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeEC---ccCCCCc
Confidence 6 7899999999986421 147899999999999997 56665 6
Q ss_pred CcccEEEEEcCCEEEEEccccCCCCcccceEEEEec--CCCceeeccccCCCCCCC-------CcceeeeecCEEEEEec
Q 006334 128 RESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDL--KTMRWASPAVKGDIPVPR-------DSHSSNVIANRLFVYGG 198 (650)
Q Consensus 128 R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~--~t~~Wt~i~~~~~lP~~R-------~~hs~v~~~~~Iyv~GG 198 (650)
|..++++++ +++|||+||.... .....+++.||+ ++++|+.+. ++|.+| ..|++++++++||++||
T Consensus 191 r~~~~~~~~-~~~iyv~GG~~~~-~~~~~~~~~y~~~~~~~~W~~~~---~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG 265 (346)
T TIGR03547 191 TAGSAIVHK-GNKLLLINGEIKP-GLRTAEVKQYLFTGGKLEWNKLP---PLPPPKSSSQEGLAGAFAGISNGVLLVAGG 265 (346)
T ss_pred CCCceEEEE-CCEEEEEeeeeCC-CccchheEEEEecCCCceeeecC---CCCCCCCCccccccEEeeeEECCEEEEeec
Confidence 777777776 6999999998432 222355666655 677999877 676654 35567788999999999
Q ss_pred cCCC-----------------CccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCC-CcccCeEEE
Q 006334 199 DCGD-----------------QYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGD-KHYYNDIWI 260 (650)
Q Consensus 199 ~~~~-----------------~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~-~~~~~dv~~ 260 (650)
.+.. .....+++||+++++|+.+. ++|.+|..+++++++++|||+||.+. ...+++++.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~---~lp~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~ 342 (346)
T TIGR03547 266 ANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVG---KLPQGLAYGVSVSWNNGVLLIGGENSGGKAVTDVYL 342 (346)
T ss_pred CCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccC---CCCCCceeeEEEEcCCEEEEEeccCCCCCEeeeEEE
Confidence 7521 11246899999999999987 78888999998899999999999875 466788887
Q ss_pred EE
Q 006334 261 LN 262 (650)
Q Consensus 261 yD 262 (650)
|.
T Consensus 343 ~~ 344 (346)
T TIGR03547 343 LS 344 (346)
T ss_pred EE
Confidence 64
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=267.14 Aligned_cols=204 Identities=17% Similarity=0.257 Sum_probs=177.9
Q ss_pred EEEECCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEe
Q 006334 83 AILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLD 162 (650)
Q Consensus 83 a~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd 162 (650)
++..++.||++||.++....+++++||+.+++|..+ .+++.+|..++++++ +++||++||.+. .+.+++||
T Consensus 267 ~~~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~---~~m~~~r~~~~~v~~-~~~iYviGG~~~-----~~sve~yd 337 (480)
T PHA02790 267 STHVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPI---PPMNSPRLYASGVPA-NNKLYVVGGLPN-----PTSVERWF 337 (480)
T ss_pred eEEECCEEEEEcCCCCCCcCCeEEEEECCCCEEEEC---CCCCchhhcceEEEE-CCEEEEECCcCC-----CCceEEEE
Confidence 345899999999997767788999999999999997 678899999998887 699999999842 25689999
Q ss_pred cCCCceeeccccCCCCCCCCcceeeeecCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCE
Q 006334 163 LKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTK 242 (650)
Q Consensus 163 ~~t~~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~ 242 (650)
+.+++|+.++ ++|.+|..|++++++++||++||.+.. .+.+++||+.+++|+.++ +++.+|..+++++++++
T Consensus 338 p~~n~W~~~~---~l~~~r~~~~~~~~~g~IYviGG~~~~--~~~ve~ydp~~~~W~~~~---~m~~~r~~~~~~~~~~~ 409 (480)
T PHA02790 338 HGDAAWVNMP---SLLKPRCNPAVASINNVIYVIGGHSET--DTTTEYLLPNHDQWQFGP---STYYPHYKSCALVFGRR 409 (480)
T ss_pred CCCCeEEECC---CCCCCCcccEEEEECCEEEEecCcCCC--CccEEEEeCCCCEEEeCC---CCCCccccceEEEECCE
Confidence 9999999877 899999999999999999999997543 368999999999999987 78899999999999999
Q ss_pred EEEEeccCCCcccCeEEEEECCCCcEEEeecCCCCCCCcceeEEEEECCeEEEEcCCCCCCCCCCcEEEEecC
Q 006334 243 VYIIGGVGDKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVTGSDIVIYGGCGEDERPLNELLVLQLG 315 (650)
Q Consensus 243 IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~~~~~~p~~R~~hsav~~~~~lyV~GG~~~~~~~~~d~~~l~l~ 315 (650)
||++||. +.+||+++++|+.++. ++.+|.++++++++++|||+||.... ...+.+.+||..
T Consensus 410 IYv~GG~--------~e~ydp~~~~W~~~~~---m~~~r~~~~~~v~~~~IYviGG~~~~-~~~~~ve~Yd~~ 470 (480)
T PHA02790 410 LFLVGRN--------AEFYCESSNTWTLIDD---PIYPRDNPELIIVDNKLLLIGGFYRG-SYIDTIEVYNNR 470 (480)
T ss_pred EEEECCc--------eEEecCCCCcEeEcCC---CCCCccccEEEEECCEEEEECCcCCC-cccceEEEEECC
Confidence 9999983 5789999999999864 78899999999999999999998632 234667777775
|
|
| >KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-28 Score=257.65 Aligned_cols=257 Identities=33% Similarity=0.608 Sum_probs=220.4
Q ss_pred CCCCCcCCCeEEeeecCCCCCCCcceeEEEEECCEEEEEccCCC-CcccceEEEEECCCCcEEEeec----CCCCCCCCc
Q 006334 5 GGENAKRAAMWLYPKVLGFNPPERWGHSACYSHGAVYIFGGCCG-GLHFGDVLMLNLDTMVWSTLAT----TGQGPGPRD 79 (650)
Q Consensus 5 ~~~~~~~~~~W~~~~~~g~~P~~R~ghs~v~~~~~IyvfGG~~~-~~~~~dv~~yD~~t~sW~~l~~----~g~~P~pR~ 79 (650)
.+.++..++.|..+.+-|..|++...|..+..+.+||+|||..+ +.++||+|.+-...-.|+++.+ .|.+|.||-
T Consensus 59 LHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRl 138 (830)
T KOG4152|consen 59 LHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRL 138 (830)
T ss_pred hhhhccccceeecchhcCCCCCchhhcceEecCceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCcc
Confidence 46688999999999999999999999999999999999999764 6788999988888888888754 467799999
Q ss_pred ceEEEEECCEEEEEcccCCC---------cCcCeEEEEECCCC----cEEeeecCCCCCCCCcccEEEEEc-----CCEE
Q 006334 80 SHSAILWGHKMIVFGGTNGY---------KKVNDLHILDLESK----EWMRPECRGAPPSPRESHTATLVG-----DDKM 141 (650)
Q Consensus 80 ~hsa~~~~~~lyVfGG~~~~---------~~~ndv~~yD~~t~----~W~~l~~~~~~P~~R~~hs~~~~~-----~~~L 141 (650)
+|+..+++++.|+|||..++ .++||+|++++.-. .|......+..|.+|..|+++++. ..++
T Consensus 139 GHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skm 218 (830)
T KOG4152|consen 139 GHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKM 218 (830)
T ss_pred CceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceE
Confidence 99999999999999998432 24799999999854 499988889999999999999883 2579
Q ss_pred EEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeeecCEEEEEeccCC--------------CCccCe
Q 006334 142 VIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCG--------------DQYHGD 207 (650)
Q Consensus 142 yv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~--------------~~~~n~ 207 (650)
|||||+. ...+.|+|.+|+++..|.+++..+..|.||.-|+++.++|+||||||+.. -+..++
T Consensus 219 vvyGGM~---G~RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTss 295 (830)
T KOG4152|consen 219 VVYGGMS---GCRLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSS 295 (830)
T ss_pred EEEcccc---cccccceeEEecceeecccccccCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccc
Confidence 9999994 56799999999999999999999999999999999999999999999521 135778
Q ss_pred EEEEECCCCcEEEeeec----CCCCCcccceEEEEECCEEEEEeccCC-------CcccCeEEEEECC
Q 006334 208 IDMLDMNSLTWSRLAII----GSSPGVRAGHAAINIGTKVYIIGGVGD-------KHYYNDIWILNVS 264 (650)
Q Consensus 208 v~~yd~~t~~W~~i~~~----g~~P~~R~~~s~v~~~~~IyI~GG~~~-------~~~~~dv~~yD~~ 264 (650)
+-++|+++..|+.+-.. ...|.+|.+|++++++.++||..|.++ ...-.|+|.+|.+
T Consensus 296 l~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAigtRlYiWSGRDGYrKAwnnQVCCkDlWyLdTe 363 (830)
T KOG4152|consen 296 LACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAIGTRLYIWSGRDGYRKAWNNQVCCKDLWYLDTE 363 (830)
T ss_pred eeeeeecchheeeeeeccccccccccccccceeEEeccEEEEEeccchhhHhhccccchhhhhhhccc
Confidence 89999999999988632 237899999999999999999999864 2334567777654
|
|
| >COG3055 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.5e-16 Score=159.69 Aligned_cols=276 Identities=20% Similarity=0.350 Sum_probs=202.0
Q ss_pred CCCCcceeEEEEECCEEEEEccCCCCcccceEEEEECCC--CcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCc-
Q 006334 24 NPPERWGHSACYSHGAVYIFGGCCGGLHFGDVLMLNLDT--MVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYK- 100 (650)
Q Consensus 24 ~P~~R~ghs~v~~~~~IyvfGG~~~~~~~~dv~~yD~~t--~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~- 100 (650)
.|.+--.-+...+++.+||.=|..+ ...|.+|+.. ..|++++...- .+|....+++++++||||||.....
T Consensus 33 lPvg~KnG~Ga~ig~~~YVGLGs~G----~afy~ldL~~~~k~W~~~a~FpG--~~rnqa~~a~~~~kLyvFgG~Gk~~~ 106 (381)
T COG3055 33 LPVGFKNGAGALIGDTVYVGLGSAG----TAFYVLDLKKPGKGWTKIADFPG--GARNQAVAAVIGGKLYVFGGYGKSVS 106 (381)
T ss_pred CCccccccccceecceEEEEeccCC----ccceehhhhcCCCCceEcccCCC--cccccchheeeCCeEEEeeccccCCC
Confidence 4444444467788899999777433 3577888764 57999987622 4799999999999999999985432
Q ss_pred ----CcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCC--------------------------
Q 006334 101 ----KVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEG-------------------------- 150 (650)
Q Consensus 101 ----~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~-------------------------- 150 (650)
.+||+|+||+.+++|.++++. .|....+++++...+.++|++||+...
T Consensus 107 ~~~~~~nd~Y~y~p~~nsW~kl~t~--sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~y 184 (381)
T COG3055 107 SSPQVFNDAYRYDPSTNSWHKLDTR--SPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHY 184 (381)
T ss_pred CCceEeeeeEEecCCCChhheeccc--cccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHH
Confidence 379999999999999998544 455577777777765699999998421
Q ss_pred ------CCcccceEEEEecCCCceeeccccCCCC-CCCCcceeeeecCEEEEEeccCCC-CccCeEEEEECC--CCcEEE
Q 006334 151 ------EANYLNDLHVLDLKTMRWASPAVKGDIP-VPRDSHSSNVIANRLFVYGGDCGD-QYHGDIDMLDMN--SLTWSR 220 (650)
Q Consensus 151 ------~~~~~~dv~~yd~~t~~Wt~i~~~~~lP-~~R~~hs~v~~~~~Iyv~GG~~~~-~~~n~v~~yd~~--t~~W~~ 220 (650)
+-.+..+++.||+.++.|..+- ..| .++++.+.+.-+|++.++-|.-.. -....+++++.. ..+|..
T Consensus 185 f~~~~~dy~~n~ev~sy~p~~n~W~~~G---~~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~ 261 (381)
T COG3055 185 FDKKAEDYFFNKEVLSYDPSTNQWRNLG---ENPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLK 261 (381)
T ss_pred hCCCHHHhcccccccccccccchhhhcC---cCcccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeee
Confidence 0124568899999999999654 555 466665555557889999886543 234456666654 667999
Q ss_pred eeecCCC----CCcccceEEEEECCEEEEEeccCC-------------------CcccCeEEEEECCCCcEEEeecCCCC
Q 006334 221 LAIIGSS----PGVRAGHAAINIGTKVYIIGGVGD-------------------KHYYNDIWILNVSTCSWSQLDTCGQQ 277 (650)
Q Consensus 221 i~~~g~~----P~~R~~~s~v~~~~~IyI~GG~~~-------------------~~~~~dv~~yD~~t~~W~~l~~~~~~ 277 (650)
+.....+ .....++-.-..++.+++.||..- ..+.++||.|| .+.|+.+. ++
T Consensus 262 l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~G---eL 336 (381)
T COG3055 262 LSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVG---EL 336 (381)
T ss_pred ccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeeec---cc
Confidence 8743221 123344444456789999999741 13567899998 89999985 57
Q ss_pred CCCcceeEEEEECCeEEEEcCCCCCCCCCCcEEEEecC
Q 006334 278 PQGRFSHAAVVTGSDIVIYGGCGEDERPLNELLVLQLG 315 (650)
Q Consensus 278 p~~R~~hsav~~~~~lyV~GG~~~~~~~~~d~~~l~l~ 315 (650)
|.++.+-.++..+++||++||....+.....++.+.+.
T Consensus 337 p~~l~YG~s~~~nn~vl~IGGE~~~Gka~~~v~~l~~~ 374 (381)
T COG3055 337 PQGLAYGVSLSYNNKVLLIGGETSGGKATTRVYSLSWD 374 (381)
T ss_pred CCCccceEEEecCCcEEEEccccCCCeeeeeEEEEEEc
Confidence 88888888888899999999999988888888777664
|
|
| >KOG2437 consensus Muskelin [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2e-18 Score=182.55 Aligned_cols=305 Identities=18% Similarity=0.298 Sum_probs=213.9
Q ss_pred cCCCeEEeeecCC-------CCCCCcceeEEEEECC--EEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcc
Q 006334 10 KRAAMWLYPKVLG-------FNPPERWGHSACYSHG--AVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDS 80 (650)
Q Consensus 10 ~~~~~W~~~~~~g-------~~P~~R~ghs~v~~~~--~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~ 80 (650)
+-+.+|.+.+.+. .-|..|.||.+|...+ .||++||+++-..+.|+|.|+...+.|..+...+..|..|.+
T Consensus 236 ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsC 315 (723)
T KOG2437|consen 236 EYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPGARSC 315 (723)
T ss_pred cccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCCCCcchhh
Confidence 3456888876655 6799999999998765 999999999999999999999999999999877767999999
Q ss_pred eEEEEECC--EEEEEcccCCCc------CcCeEEEEECCCCcEEeeecCC---CCCCCCcccEEEEEcC-CEEEEEcccc
Q 006334 81 HSAILWGH--KMIVFGGTNGYK------KVNDLHILDLESKEWMRPECRG---APPSPRESHTATLVGD-DKMVIFGGSG 148 (650)
Q Consensus 81 hsa~~~~~--~lyVfGG~~~~~------~~ndv~~yD~~t~~W~~l~~~~---~~P~~R~~hs~~~~~~-~~Lyv~GG~~ 148 (650)
|-+++... +||+.|-+-+.. .-.|+|+||..++.|..+.... .-|..-+.|.+++..+ +-|||+||..
T Consensus 316 HRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~ 395 (723)
T KOG2437|consen 316 HRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRI 395 (723)
T ss_pred hhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCee
Confidence 99998765 999999874432 2479999999999999874322 3478889999999863 2399999985
Q ss_pred CCCC-cccceEEEEecCCCceeeccccC-------CCCCCCCcceeeee--cCEEEEEeccCCCCccCeEEEEECCCCcE
Q 006334 149 EGEA-NYLNDLHVLDLKTMRWASPAVKG-------DIPVPRDSHSSNVI--ANRLFVYGGDCGDQYHGDIDMLDMNSLTW 218 (650)
Q Consensus 149 ~~~~-~~~~dv~~yd~~t~~Wt~i~~~~-------~lP~~R~~hs~v~~--~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W 218 (650)
.... ..+.-+|.||.....|..+.... .....|-+|++-++ ++++|++||...+.-++-.+.||+....-
T Consensus 396 ~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~El~L~f~y~I~~E~~ 475 (723)
T KOG2437|consen 396 LTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTELNLFFSYDIDSEHV 475 (723)
T ss_pred ccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceEEeehhcceeccccc
Confidence 3333 56788999999999998654221 11234666766655 57899999988777777777887665443
Q ss_pred EEeeec----CCCCCcccceEEEEE---CCEEEEEeccCC------CcccCeEEEEECCCCcEEEeecC-----------
Q 006334 219 SRLAII----GSSPGVRAGHAAINI---GTKVYIIGGVGD------KHYYNDIWILNVSTCSWSQLDTC----------- 274 (650)
Q Consensus 219 ~~i~~~----g~~P~~R~~~s~v~~---~~~IyI~GG~~~------~~~~~dv~~yD~~t~~W~~l~~~----------- 274 (650)
..+... ..+-..+....-+.. ..+|++.-|... ....+.+|+|++.++.|..+...
T Consensus 476 ~~~s~~~k~dsS~~pS~~f~qRs~~dp~~~~i~~~~G~~~~~~~~e~~~rns~wi~~i~~~~w~cI~~I~~~~~d~dtvf 555 (723)
T KOG2437|consen 476 DIISDGTKKDSSMVPSTGFTQRATIDPELNEIHVLSGLSKDKEKREENVRNSFWIYDIVRNSWSCIYKIDQAAKDNDTVF 555 (723)
T ss_pred hhhhccCcCccccCCCcchhhhcccCCCCcchhhhcccchhccCccccccCcEEEEEecccchhhHhhhHHhhccCCcee
Confidence 333210 011111211111222 236777767642 23677899999999999776321
Q ss_pred ----------CCCCCCcceeEEEEE--CCeEEEEcCCCCCC----CCCCcEEEEec
Q 006334 275 ----------GQQPQGRFSHAAVVT--GSDIVIYGGCGEDE----RPLNELLVLQL 314 (650)
Q Consensus 275 ----------~~~p~~R~~hsav~~--~~~lyV~GG~~~~~----~~~~d~~~l~l 314 (650)
-..+.+|++|+.++. ..-+|.+||..... ..++|.|.+++
T Consensus 556 svpFp~ks~~~~~~~~rf~h~~~~dL~~~~~yl~Ggn~~~~~~~~m~l~dfW~l~I 611 (723)
T KOG2437|consen 556 SVPFPTKSLQEEEPCPRFAHQLVYDLLHKVHYLFGGNPGKSCSPKMRLDDFWSLKI 611 (723)
T ss_pred eccCCcccccceeccccchhHHHHHHhhhhhhhhcCCCCCCCCchhhhhhHHHHhh
Confidence 014667888877664 34579999965432 12345555444
|
|
| >COG3055 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.8e-15 Score=155.98 Aligned_cols=241 Identities=21% Similarity=0.360 Sum_probs=179.8
Q ss_pred CcCCCeEEeeecCCCCCCCcceeEEEEECCEEEEEccCCC-----CcccceEEEEECCCCcEEEeecCCCCCCCCcceEE
Q 006334 9 AKRAAMWLYPKVLGFNPPERWGHSACYSHGAVYIFGGCCG-----GLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSA 83 (650)
Q Consensus 9 ~~~~~~W~~~~~~g~~P~~R~ghs~v~~~~~IyvfGG~~~-----~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa 83 (650)
+...-.|. +...++-.+|.+..+++++++||+|||... .+.++|+|+||+.+++|+++... .|....++++
T Consensus 66 ~~~~k~W~--~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~--sP~gl~G~~~ 141 (381)
T COG3055 66 KKPGKGWT--KIADFPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTR--SPTGLVGAST 141 (381)
T ss_pred hcCCCCce--EcccCCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheeccc--ccccccccee
Confidence 33446798 577788899999999999999999999863 34579999999999999999765 3667888999
Q ss_pred EEECC-EEEEEcccCC----------------------------------CcCcCeEEEEECCCCcEEeeecCCCCCCCC
Q 006334 84 ILWGH-KMIVFGGTNG----------------------------------YKKVNDLHILDLESKEWMRPECRGAPPSPR 128 (650)
Q Consensus 84 ~~~~~-~lyVfGG~~~----------------------------------~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R 128 (650)
+.+++ +||++||.+. .....+++.||+.++.|+.+ +..|..-
T Consensus 142 ~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~---G~~pf~~ 218 (381)
T COG3055 142 FSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNL---GENPFYG 218 (381)
T ss_pred EecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhc---CcCcccC
Confidence 99877 9999999851 01246799999999999987 5555444
Q ss_pred cccEEEEEcCCEEEEEccccCCCCcccceEEEEecC--CCceeeccccCCCCCCCC-------cceeeeecCEEEEEecc
Q 006334 129 ESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLK--TMRWASPAVKGDIPVPRD-------SHSSNVIANRLFVYGGD 199 (650)
Q Consensus 129 ~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~--t~~Wt~i~~~~~lP~~R~-------~hs~v~~~~~Iyv~GG~ 199 (650)
.+.++++..++++.++-|.-. .......++++++. ..+|..+. ++|.+.. ++..-..++.+.+.||.
T Consensus 219 ~aGsa~~~~~n~~~lInGEiK-pGLRt~~~k~~~~~~~~~~w~~l~---~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGA 294 (381)
T COG3055 219 NAGSAVVIKGNKLTLINGEIK-PGLRTAEVKQADFGGDNLKWLKLS---DLPAPIGSNKEGVAGAFSGKSNGEVLVAGGA 294 (381)
T ss_pred ccCcceeecCCeEEEEcceec-CCccccceeEEEeccCceeeeecc---CCCCCCCCCccccceeccceeCCeEEEecCC
Confidence 444666666788999999743 34445567777764 56898876 4443332 22333446788888883
Q ss_pred CC-------------------CCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCC-CcccCeEE
Q 006334 200 CG-------------------DQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGD-KHYYNDIW 259 (650)
Q Consensus 200 ~~-------------------~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~-~~~~~dv~ 259 (650)
.- ..+.++||.|| ++.|..+- .+|.++....++..++.||++||... .....+++
T Consensus 295 nF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~G---eLp~~l~YG~s~~~nn~vl~IGGE~~~Gka~~~v~ 369 (381)
T COG3055 295 NFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVG---ELPQGLAYGVSLSYNNKVLLIGGETSGGKATTRVY 369 (381)
T ss_pred CChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeeec---ccCCCccceEEEecCCcEEEEccccCCCeeeeeEE
Confidence 21 13567888888 99999987 78889999999999999999999864 45666666
Q ss_pred EEECCC
Q 006334 260 ILNVST 265 (650)
Q Consensus 260 ~yD~~t 265 (650)
.+-...
T Consensus 370 ~l~~~g 375 (381)
T COG3055 370 SLSWDG 375 (381)
T ss_pred EEEEcC
Confidence 654443
|
|
| >KOG2437 consensus Muskelin [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.8e-15 Score=158.97 Aligned_cols=264 Identities=17% Similarity=0.293 Sum_probs=186.9
Q ss_pred CCCcEEEeecCC-------CCCCCCcceEEEEECC--EEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCccc
Q 006334 61 DTMVWSTLATTG-------QGPGPRDSHSAILWGH--KMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESH 131 (650)
Q Consensus 61 ~t~sW~~l~~~g-------~~P~pR~~hsa~~~~~--~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h 131 (650)
-+..|..++... ..|..|.+|.++...+ .||++||+++...+.|+|.|+...+.|+.++.....|.+|.+|
T Consensus 237 y~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCH 316 (723)
T KOG2437|consen 237 YKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPGARSCH 316 (723)
T ss_pred ccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCCCCcchhhh
Confidence 355788776544 4588999999998754 9999999999999999999999999999998888899999999
Q ss_pred EEEEEc-CCEEEEEccccCC----CCcccceEEEEecCCCceeeccccC---CCCCCCCcceeeeecCE--EEEEeccCC
Q 006334 132 TATLVG-DDKMVIFGGSGEG----EANYLNDLHVLDLKTMRWASPAVKG---DIPVPRDSHSSNVIANR--LFVYGGDCG 201 (650)
Q Consensus 132 s~~~~~-~~~Lyv~GG~~~~----~~~~~~dv~~yd~~t~~Wt~i~~~~---~lP~~R~~hs~v~~~~~--Iyv~GG~~~ 201 (650)
-++... ..+||+.|-+-.. ......|+|+||.+++.|..+.... .-|...+.|.+++.+++ ||||||..-
T Consensus 317 RMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~ 396 (723)
T KOG2437|consen 317 RMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRIL 396 (723)
T ss_pred hhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeec
Confidence 998763 2489999987432 2234689999999999999876433 46778999999999877 999999642
Q ss_pred ---CCccCeEEEEECCCCcEEEeeecC-------CCCCcccceEEEEE--CCEEEEEeccCCCcccCeEEEEECCCCcEE
Q 006334 202 ---DQYHGDIDMLDMNSLTWSRLAIIG-------SSPGVRAGHAAINI--GTKVYIIGGVGDKHYYNDIWILNVSTCSWS 269 (650)
Q Consensus 202 ---~~~~n~v~~yd~~t~~W~~i~~~g-------~~P~~R~~~s~v~~--~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~ 269 (650)
......+|.||.....|..+...- .-...|.+|+|-.. ++.+|++||.....-++-.+.||+....=.
T Consensus 397 ~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~El~L~f~y~I~~E~~~ 476 (723)
T KOG2437|consen 397 TCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTELNLFFSYDIDSEHVD 476 (723)
T ss_pred cCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceEEeehhcceeccccch
Confidence 245678999999999999876421 11235777877655 458999999987777777788877655433
Q ss_pred EeecC-----CCCCCCcceeEEEEE---CCeEEEEcCCCCCCC-----CCCcEEEEecCCCCCCCcccc
Q 006334 270 QLDTC-----GQQPQGRFSHAAVVT---GSDIVIYGGCGEDER-----PLNELLVLQLGAEHPNYRYNI 325 (650)
Q Consensus 270 ~l~~~-----~~~p~~R~~hsav~~---~~~lyV~GG~~~~~~-----~~~d~~~l~l~~~~~~~~~~~ 325 (650)
.+... ...|+..+..- ++. ...|.+.-|...... ..+.+|++.+...++...+++
T Consensus 477 ~~s~~~k~dsS~~pS~~f~qR-s~~dp~~~~i~~~~G~~~~~~~~e~~~rns~wi~~i~~~~w~cI~~I 544 (723)
T KOG2437|consen 477 IISDGTKKDSSMVPSTGFTQR-ATIDPELNEIHVLSGLSKDKEKREENVRNSFWIYDIVRNSWSCIYKI 544 (723)
T ss_pred hhhccCcCccccCCCcchhhh-cccCCCCcchhhhcccchhccCccccccCcEEEEEecccchhhHhhh
Confidence 33211 11122111111 222 244665555543321 345677777765554444433
|
|
| >PF13964 Kelch_6: Kelch motif | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.1e-09 Score=81.31 Aligned_cols=49 Identities=41% Similarity=0.674 Sum_probs=44.9
Q ss_pred CCcceEEEEECCEEEEEcccCC-CcCcCeEEEEECCCCcEEeeecCCCCCCCC
Q 006334 77 PRDSHSAILWGHKMIVFGGTNG-YKKVNDLHILDLESKEWMRPECRGAPPSPR 128 (650)
Q Consensus 77 pR~~hsa~~~~~~lyVfGG~~~-~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R 128 (650)
||.+|++++++++||||||... ...++++++||+.+++|+++ .++|.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~---~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQL---PPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEEC---CCCCCCC
Confidence 6899999999999999999988 67799999999999999998 5778776
|
|
| >PF13964 Kelch_6: Kelch motif | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.1e-09 Score=81.29 Aligned_cols=49 Identities=39% Similarity=0.697 Sum_probs=45.1
Q ss_pred CcceeEEEEECCEEEEEccCCC-CcccceEEEEECCCCcEEEeecCCCCCCCC
Q 006334 27 ERWGHSACYSHGAVYIFGGCCG-GLHFGDVLMLNLDTMVWSTLATTGQGPGPR 78 (650)
Q Consensus 27 ~R~ghs~v~~~~~IyvfGG~~~-~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR 78 (650)
||.+|++++++++||||||... ...++++++||+.+++|+.++++ |.||
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~m---p~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPM---PTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCC---CCCC
Confidence 6899999999999999999987 78899999999999999999877 6666
|
|
| >PLN02772 guanylate kinase | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.7e-08 Score=104.42 Aligned_cols=92 Identities=20% Similarity=0.328 Sum_probs=80.4
Q ss_pred cCCCCCCCcceeEEEEECCEEEEEccCCCCc-ccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccC
Q 006334 20 VLGFNPPERWGHSACYSHGAVYIFGGCCGGL-HFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW-GHKMIVFGGTN 97 (650)
Q Consensus 20 ~~g~~P~~R~ghs~v~~~~~IyvfGG~~~~~-~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~-~~~lyVfGG~~ 97 (650)
..|+-..++..|+++.+++++|||||.+... ..+.+|+||..+++|......|.+|.||.+|+++++ +++|+|+++..
T Consensus 17 ~~~~~~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~ 96 (398)
T PLN02772 17 TNGFGVKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGS 96 (398)
T ss_pred ccCccCCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCC
Confidence 4566677999999999999999999987654 789999999999999999999999999999999998 58999999865
Q ss_pred CCcCcCeEEEEECCCC
Q 006334 98 GYKKVNDLHILDLESK 113 (650)
Q Consensus 98 ~~~~~ndv~~yD~~t~ 113 (650)
... +++|.+...|.
T Consensus 97 ~~~--~~~w~l~~~t~ 110 (398)
T PLN02772 97 APD--DSIWFLEVDTP 110 (398)
T ss_pred CCc--cceEEEEcCCH
Confidence 543 78999988764
|
|
| >PF13415 Kelch_3: Galactose oxidase, central domain | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.7e-08 Score=74.46 Aligned_cols=47 Identities=38% Similarity=0.814 Sum_probs=41.5
Q ss_pred CCEEEEEccCC--CCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE
Q 006334 37 HGAVYIFGGCC--GGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW 86 (650)
Q Consensus 37 ~~~IyvfGG~~--~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~ 86 (650)
+++||||||.+ ....++++|+||+.+++|+++ ++.|.+|.+|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~---~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRI---GDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEEC---CCCCCCccceEEEEC
Confidence 57999999998 678889999999999999998 445999999999864
|
|
| >PLN02772 guanylate kinase | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.2e-07 Score=102.07 Aligned_cols=88 Identities=20% Similarity=0.427 Sum_probs=77.3
Q ss_pred CCCCcceEEEEECCEEEEEcccCCCc-CcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCc
Q 006334 75 PGPRDSHSAILWGHKMIVFGGTNGYK-KVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEAN 153 (650)
Q Consensus 75 P~pR~~hsa~~~~~~lyVfGG~~~~~-~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~ 153 (650)
..++.+++++.+++++||+||.+... ..+++|+||..+.+|......+..|.+|.+|+++++.+++|+|+++-...
T Consensus 22 ~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~--- 98 (398)
T PLN02772 22 VKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP--- 98 (398)
T ss_pred CCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC---
Confidence 45899999999999999999988765 68999999999999999988999999999999999999999999875432
Q ss_pred ccceEEEEecCCC
Q 006334 154 YLNDLHVLDLKTM 166 (650)
Q Consensus 154 ~~~dv~~yd~~t~ 166 (650)
-.++|.+..+|.
T Consensus 99 -~~~~w~l~~~t~ 110 (398)
T PLN02772 99 -DDSIWFLEVDTP 110 (398)
T ss_pred -ccceEEEEcCCH
Confidence 267898887663
|
|
| >PF13415 Kelch_3: Galactose oxidase, central domain | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.4e-08 Score=74.64 Aligned_cols=47 Identities=45% Similarity=0.931 Sum_probs=42.0
Q ss_pred CCEEEEEcccC--CCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEE
Q 006334 87 GHKMIVFGGTN--GYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLV 136 (650)
Q Consensus 87 ~~~lyVfGG~~--~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~ 136 (650)
+++||||||.+ ....++|+|+||+.+++|+++ +.+|.+|++|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~---~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRI---GDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEEC---CCCCCCccceEEEEC
Confidence 57999999998 566689999999999999998 788999999999863
|
|
| >PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.5e-06 Score=84.55 Aligned_cols=212 Identities=20% Similarity=0.262 Sum_probs=130.1
Q ss_pred CCCCcceEEEEE---C---CEEEEEcccCCCc-CcCeEEEEECCCCc--------EEeeecCCCCCCCCcccEEEEEc--
Q 006334 75 PGPRDSHSAILW---G---HKMIVFGGTNGYK-KVNDLHILDLESKE--------WMRPECRGAPPSPRESHTATLVG-- 137 (650)
Q Consensus 75 P~pR~~hsa~~~---~---~~lyVfGG~~~~~-~~ndv~~yD~~t~~--------W~~l~~~~~~P~~R~~hs~~~~~-- 137 (650)
|..|.-+.+.+. + ...+|.||.+... .++.+|++...+.. +.+-+..++.|.+|++|++.++.
T Consensus 20 PPLR~PAv~~~~~~~~~~~~~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~Sr 99 (337)
T PF03089_consen 20 PPLRCPAVCHLSDPSDGEPEQYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSR 99 (337)
T ss_pred CCCCCccEeeecCCCCCCeeeEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEEC
Confidence 555666555552 2 2467889987544 46888888776543 33445678999999999999884
Q ss_pred -CCEEEEEccccCCC------------CcccceEEEEecCCCceeeccccCCCCCCCCcceeeeecCEEEEEeccC--CC
Q 006334 138 -DDKMVIFGGSGEGE------------ANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDC--GD 202 (650)
Q Consensus 138 -~~~Lyv~GG~~~~~------------~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~--~~ 202 (650)
+..+++|||+..-. -.+.-.++.+|++-+..+... .+.+..+..+|.+.+-++.+|++||.. .+
T Consensus 100 GKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~-lpEl~dG~SFHvslar~D~VYilGGHsl~sd 178 (337)
T PF03089_consen 100 GKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHT-LPELQDGQSFHVSLARNDCVYILGGHSLESD 178 (337)
T ss_pred CcEEEEEECCcccCCccccchhhcceeccCCCeEEEEecccccccccc-chhhcCCeEEEEEEecCceEEEEccEEccCC
Confidence 45688999984210 123456888999888877532 335666778899999999999999953 33
Q ss_pred CccCeEEEEECCCC---cEEEeeecCCCCCcccceEEEEE--C-CEEEEEeccCCCc---c--------cCeEEEEECCC
Q 006334 203 QYHGDIDMLDMNSL---TWSRLAIIGSSPGVRAGHAAINI--G-TKVYIIGGVGDKH---Y--------YNDIWILNVST 265 (650)
Q Consensus 203 ~~~n~v~~yd~~t~---~W~~i~~~g~~P~~R~~~s~v~~--~-~~IyI~GG~~~~~---~--------~~dv~~yD~~t 265 (650)
..-..++++..+-- -+.... .+....+..++++. + +..+|+||+.... . -+.|.+-..++
T Consensus 179 ~Rpp~l~rlkVdLllGSP~vsC~---vl~~glSisSAIvt~~~~~e~iIlGGY~sdsQKRm~C~~V~Ldd~~I~ie~~E~ 255 (337)
T PF03089_consen 179 SRPPRLYRLKVDLLLGSPAVSCT---VLQGGLSISSAIVTQTGPHEYIILGGYQSDSQKRMECNTVSLDDDGIHIEEREP 255 (337)
T ss_pred CCCCcEEEEEEeecCCCceeEEE---ECCCCceEeeeeEeecCCCceEEEecccccceeeeeeeEEEEeCCceEeccCCC
Confidence 34445666543211 111111 12233333333332 2 5899999985321 0 12244444445
Q ss_pred CcEEEeecCCCCCCCcceeEEEEECCeEEE
Q 006334 266 CSWSQLDTCGQQPQGRFSHAAVVTGSDIVI 295 (650)
Q Consensus 266 ~~W~~l~~~~~~p~~R~~hsav~~~~~lyV 295 (650)
-.|+ +++...|.+++..+-++.+++
T Consensus 256 P~Wt-----~dI~hSrtWFGgs~G~G~~Li 280 (337)
T PF03089_consen 256 PEWT-----GDIKHSRTWFGGSMGKGSALI 280 (337)
T ss_pred CCCC-----CCcCcCccccccccCCceEEE
Confidence 5565 345667777777776666443
|
V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus |
| >PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.2e-07 Score=72.27 Aligned_cols=45 Identities=38% Similarity=0.762 Sum_probs=41.2
Q ss_pred CcceeEEEEECCEEEEEccC---CCCcccceEEEEECCCCcEEEeecC
Q 006334 27 ERWGHSACYSHGAVYIFGGC---CGGLHFGDVLMLNLDTMVWSTLATT 71 (650)
Q Consensus 27 ~R~ghs~v~~~~~IyvfGG~---~~~~~~~dv~~yD~~t~sW~~l~~~ 71 (650)
+|.+|++++++++||||||+ ......+++++||+.+++|+.++.+
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCC
Confidence 68999999999999999999 4567889999999999999998765
|
This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding |
| >PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B | Back alignment and domain information |
|---|
Probab=98.57 E-value=7.1e-08 Score=73.31 Aligned_cols=45 Identities=29% Similarity=0.678 Sum_probs=30.9
Q ss_pred CcceeEEEEE-CCEEEEEccCCCC-cccceEEEEECCCCcEEEeecC
Q 006334 27 ERWGHSACYS-HGAVYIFGGCCGG-LHFGDVLMLNLDTMVWSTLATT 71 (650)
Q Consensus 27 ~R~ghs~v~~-~~~IyvfGG~~~~-~~~~dv~~yD~~t~sW~~l~~~ 71 (650)
||.+|+++.+ ++.||||||.+.. ..++++|+||+.+++|++++.+
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~ 47 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSM 47 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCC
Confidence 6999999998 5899999999865 7999999999999999999544
|
|
| >PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.3e-07 Score=71.00 Aligned_cols=45 Identities=27% Similarity=0.476 Sum_probs=41.6
Q ss_pred CcceeEEEEECCEEEEEccCCC-CcccceEEEEECCCCcEEEeecC
Q 006334 27 ERWGHSACYSHGAVYIFGGCCG-GLHFGDVLMLNLDTMVWSTLATT 71 (650)
Q Consensus 27 ~R~ghs~v~~~~~IyvfGG~~~-~~~~~dv~~yD~~t~sW~~l~~~ 71 (650)
||.+|++++++++|||+||... ....+++++||+.+++|+.++++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~m 46 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPM 46 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCC
Confidence 6899999999999999999987 78899999999999999999876
|
This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A .... |
| >PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.6e-07 Score=71.56 Aligned_cols=43 Identities=40% Similarity=0.723 Sum_probs=39.0
Q ss_pred CCcceEEEEECCEEEEEccc---CCCcCcCeEEEEECCCCcEEeee
Q 006334 77 PRDSHSAILWGHKMIVFGGT---NGYKKVNDLHILDLESKEWMRPE 119 (650)
Q Consensus 77 pR~~hsa~~~~~~lyVfGG~---~~~~~~ndv~~yD~~t~~W~~l~ 119 (650)
||++|++++++++||||||+ +.....+++++||+++++|+.++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~ 46 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELS 46 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecC
Confidence 68999999999999999999 45566899999999999999973
|
This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding |
| >PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.2e-07 Score=71.97 Aligned_cols=48 Identities=35% Similarity=0.768 Sum_probs=31.2
Q ss_pred CCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCC
Q 006334 127 PRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIP 178 (650)
Q Consensus 127 ~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP 178 (650)
||++|+++.+.+++||||||.+. ....++++|+||+++++|+++. ++|
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~-~~~~~~d~~~~d~~~~~W~~~~---~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDS-SGSPLNDLWIFDIETNTWTRLP---SMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE--TEE---EEEEETTTTEEEE-----SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCC-CCcccCCEEEEECCCCEEEECC---CCC
Confidence 69999999997799999999954 3468999999999999999874 555
|
|
| >PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.1e-07 Score=69.96 Aligned_cols=44 Identities=32% Similarity=0.664 Sum_probs=40.5
Q ss_pred CCCcceeeeecCEEEEEeccCC-CCccCeEEEEECCCCcEEEeee
Q 006334 180 PRDSHSSNVIANRLFVYGGDCG-DQYHGDIDMLDMNSLTWSRLAI 223 (650)
Q Consensus 180 ~R~~hs~v~~~~~Iyv~GG~~~-~~~~n~v~~yd~~t~~W~~i~~ 223 (650)
+|..|++++++++||++||... ...++++++||+.+++|+.++.
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~ 45 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPP 45 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCC
Confidence 6899999999999999999887 7899999999999999999983
|
This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A .... |
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=98.45 E-value=7.6e-06 Score=83.32 Aligned_cols=171 Identities=16% Similarity=0.169 Sum_probs=109.7
Q ss_pred eEEEEECCEEEEEccCCC----------C------------cccceEEEEECCCCcEEEeecCCCCCCCCcceEEEE-EC
Q 006334 31 HSACYSHGAVYIFGGCCG----------G------------LHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAIL-WG 87 (650)
Q Consensus 31 hs~v~~~~~IyvfGG~~~----------~------------~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~-~~ 87 (650)
|.+++.++++++|-..+- . ........||+.+++++.+... .--++.+-++ -+
T Consensus 2 h~~~~~~~~v~~~d~t~~g~s~~~~~~~~c~~~~~~~~~~~d~~a~s~~yD~~tn~~rpl~v~----td~FCSgg~~L~d 77 (243)
T PF07250_consen 2 HMALLHNNKVIMFDRTNFGPSNISLPDGRCRDNPEDNALKFDGPAHSVEYDPNTNTFRPLTVQ----TDTFCSGGAFLPD 77 (243)
T ss_pred eEeEccCCEEEEEeCCCcccccccCCCCccccCccccccccCceEEEEEEecCCCcEEeccCC----CCCcccCcCCCCC
Confidence 667777888888876320 0 0112345799999999988653 2233333333 47
Q ss_pred CEEEEEcccCCCcCcCeEEEEECCC----CcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEec
Q 006334 88 HKMIVFGGTNGYKKVNDLHILDLES----KEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDL 163 (650)
Q Consensus 88 ~~lyVfGG~~~~~~~ndv~~yD~~t----~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~ 163 (650)
|++++.||... -.+.+..|++.+ ..|.+. ...+-.+|.+.+.+.+.|++++|+||.... ..+.+..
T Consensus 78 G~ll~tGG~~~--G~~~ir~~~p~~~~~~~~w~e~--~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~------t~E~~P~ 147 (243)
T PF07250_consen 78 GRLLQTGGDND--GNKAIRIFTPCTSDGTCDWTES--PNDMQSGRWYPTATTLPDGRVLIVGGSNNP------TYEFWPP 147 (243)
T ss_pred CCEEEeCCCCc--cccceEEEecCCCCCCCCceEC--cccccCCCccccceECCCCCEEEEeCcCCC------cccccCC
Confidence 99999999865 234577788765 579875 234789999999999999999999998521 1233332
Q ss_pred CC-----Cceeecccc-CCCCCCCCcceeeeecCEEEEEeccCCCCccCeEEEEECCCCcE-EEee
Q 006334 164 KT-----MRWASPAVK-GDIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTW-SRLA 222 (650)
Q Consensus 164 ~t-----~~Wt~i~~~-~~lP~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W-~~i~ 222 (650)
.. ..|..+... ...+...+=+..+.-+++||+++. ++...||..++++ ..++
T Consensus 148 ~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an-------~~s~i~d~~~n~v~~~lP 206 (243)
T PF07250_consen 148 KGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFAN-------RGSIIYDYKTNTVVRTLP 206 (243)
T ss_pred ccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEc-------CCcEEEeCCCCeEEeeCC
Confidence 11 122222211 122333344555555899999988 4678899999977 5665
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >PF13854 Kelch_5: Kelch motif | Back alignment and domain information |
|---|
Probab=98.41 E-value=5.2e-07 Score=66.44 Aligned_cols=39 Identities=36% Similarity=0.643 Sum_probs=35.7
Q ss_pred CCCCcceeEEEEECCEEEEEccCC--CCcccceEEEEECCC
Q 006334 24 NPPERWGHSACYSHGAVYIFGGCC--GGLHFGDVLMLNLDT 62 (650)
Q Consensus 24 ~P~~R~ghs~v~~~~~IyvfGG~~--~~~~~~dv~~yD~~t 62 (650)
.|.+|.+|++++++++||||||.. ....++|+|+||+.+
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 488999999999999999999998 477899999999876
|
|
| >PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.3e-05 Score=81.26 Aligned_cols=174 Identities=19% Similarity=0.288 Sum_probs=112.2
Q ss_pred CCCCCcccEEEEEc-----C-CEEEEEccccCCCCcccceEEEEecCCC--------ceeeccccCCCCCCCCcceeeee
Q 006334 124 PPSPRESHTATLVG-----D-DKMVIFGGSGEGEANYLNDLHVLDLKTM--------RWASPAVKGDIPVPRDSHSSNVI 189 (650)
Q Consensus 124 ~P~~R~~hs~~~~~-----~-~~Lyv~GG~~~~~~~~~~dv~~yd~~t~--------~Wt~i~~~~~lP~~R~~hs~v~~ 189 (650)
+|..| +.+.+.+. + ...+|-||+ ..+++..+.+|+...+.. ...+.+..+++|.+|++|++.++
T Consensus 19 LPPLR-~PAv~~~~~~~~~~~~~YlIHGGr-TPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV 96 (337)
T PF03089_consen 19 LPPLR-CPAVCHLSDPSDGEPEQYLIHGGR-TPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVV 96 (337)
T ss_pred CCCCC-CccEeeecCCCCCCeeeEEecCCc-CCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEE
Confidence 34444 55555551 1 245577888 456777888888876532 23445567899999999999877
Q ss_pred c----CEEEEEeccCCC--------------CccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccC-
Q 006334 190 A----NRLFVYGGDCGD--------------QYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVG- 250 (650)
Q Consensus 190 ~----~~Iyv~GG~~~~--------------~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~- 250 (650)
. ...++|||.+-. .....|+.+|++-+..+.-. .+.+-.+.++|.+.+-+|.+|++||..
T Consensus 97 ~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~-lpEl~dG~SFHvslar~D~VYilGGHsl 175 (337)
T PF03089_consen 97 HSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHT-LPELQDGQSFHVSLARNDCVYILGGHSL 175 (337)
T ss_pred EECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEecccccccccc-chhhcCCeEEEEEEecCceEEEEccEEc
Confidence 3 458899995422 12345888999888877654 235667789999999999999999975
Q ss_pred -CCcccCeEEEEECCCCc---EEEeecCCCCCCCcceeEEEEE---CCeEEEEcCCCCCC
Q 006334 251 -DKHYYNDIWILNVSTCS---WSQLDTCGQQPQGRFSHAAVVT---GSDIVIYGGCGEDE 303 (650)
Q Consensus 251 -~~~~~~dv~~yD~~t~~---W~~l~~~~~~p~~R~~hsav~~---~~~lyV~GG~~~~~ 303 (650)
.+.....++++.++--. +..... +..+..-.++++. .++.+|+||+..+.
T Consensus 176 ~sd~Rpp~l~rlkVdLllGSP~vsC~v---l~~glSisSAIvt~~~~~e~iIlGGY~sds 232 (337)
T PF03089_consen 176 ESDSRPPRLYRLKVDLLLGSPAVSCTV---LQGGLSISSAIVTQTGPHEYIILGGYQSDS 232 (337)
T ss_pred cCCCCCCcEEEEEEeecCCCceeEEEE---CCCCceEeeeeEeecCCCceEEEecccccc
Confidence 34445567777554221 111111 2233333344443 46789999987554
|
V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus |
| >PF13854 Kelch_5: Kelch motif | Back alignment and domain information |
|---|
Probab=98.35 E-value=8.4e-07 Score=65.30 Aligned_cols=39 Identities=46% Similarity=0.761 Sum_probs=35.1
Q ss_pred CCCCCcceEEEEECCEEEEEcccCC--CcCcCeEEEEECCC
Q 006334 74 GPGPRDSHSAILWGHKMIVFGGTNG--YKKVNDLHILDLES 112 (650)
Q Consensus 74 ~P~pR~~hsa~~~~~~lyVfGG~~~--~~~~ndv~~yD~~t 112 (650)
.|.+|++|++++++++||||||++. ...++|+|+||+.+
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 3889999999999999999999984 56689999999876
|
|
| >smart00612 Kelch Kelch domain | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.7e-06 Score=63.20 Aligned_cols=47 Identities=28% Similarity=0.605 Sum_probs=41.1
Q ss_pred EEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECC
Q 006334 39 AVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGH 88 (650)
Q Consensus 39 ~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~ 88 (650)
+|||+||.......+++++||+.+++|+.++.+ |.+|..|+++++++
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~---~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLPSM---PTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCCCCeEccCCCC---CCccccceEEEeCC
Confidence 489999987767789999999999999998877 78999999988764
|
|
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00012 Score=74.53 Aligned_cols=150 Identities=13% Similarity=0.205 Sum_probs=100.7
Q ss_pred CeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCC----CceeeccccCCCC
Q 006334 103 NDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKT----MRWASPAVKGDIP 178 (650)
Q Consensus 103 ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t----~~Wt~i~~~~~lP 178 (650)
..--.||+.+++++.+.. ..--++.+.++..|+++++.||..++ ...+..|++.+ ..|.+.. ..|.
T Consensus 46 a~s~~yD~~tn~~rpl~v----~td~FCSgg~~L~dG~ll~tGG~~~G----~~~ir~~~p~~~~~~~~w~e~~--~~m~ 115 (243)
T PF07250_consen 46 AHSVEYDPNTNTFRPLTV----QTDTFCSGGAFLPDGRLLQTGGDNDG----NKAIRIFTPCTSDGTCDWTESP--NDMQ 115 (243)
T ss_pred EEEEEEecCCCcEEeccC----CCCCcccCcCCCCCCCEEEeCCCCcc----ccceEEEecCCCCCCCCceECc--cccc
Confidence 345689999999998743 34445555666678999999998542 24566777754 5788643 2488
Q ss_pred CCCCcceeeee-cCEEEEEeccCCCCccCeEEEEECCC-----CcEEEeeec-CCCCCcccceEEEEECCEEEEEeccCC
Q 006334 179 VPRDSHSSNVI-ANRLFVYGGDCGDQYHGDIDMLDMNS-----LTWSRLAII-GSSPGVRAGHAAINIGTKVYIIGGVGD 251 (650)
Q Consensus 179 ~~R~~hs~v~~-~~~Iyv~GG~~~~~~~n~v~~yd~~t-----~~W~~i~~~-g~~P~~R~~~s~v~~~~~IyI~GG~~~ 251 (650)
.+|+..+++.+ +++++|+||... ...+.+.... ..|..+... ...+...+-+....-+++||+++.
T Consensus 116 ~~RWYpT~~~L~DG~vlIvGG~~~----~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an--- 188 (243)
T PF07250_consen 116 SGRWYPTATTLPDGRVLIVGGSNN----PTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFAN--- 188 (243)
T ss_pred CCCccccceECCCCCEEEEeCcCC----CcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEc---
Confidence 99999999887 689999999762 2223333211 123223211 123445566667777899999976
Q ss_pred CcccCeEEEEECCCCcE-EEeec
Q 006334 252 KHYYNDIWILNVSTCSW-SQLDT 273 (650)
Q Consensus 252 ~~~~~dv~~yD~~t~~W-~~l~~ 273 (650)
.+..+||..++++ ..++.
T Consensus 189 ----~~s~i~d~~~n~v~~~lP~ 207 (243)
T PF07250_consen 189 ----RGSIIYDYKTNTVVRTLPD 207 (243)
T ss_pred ----CCcEEEeCCCCeEEeeCCC
Confidence 3678899999987 56654
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >smart00612 Kelch Kelch domain | Back alignment and domain information |
|---|
Probab=98.15 E-value=3.2e-06 Score=62.78 Aligned_cols=47 Identities=30% Similarity=0.544 Sum_probs=41.8
Q ss_pred EEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECC
Q 006334 192 RLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGT 241 (650)
Q Consensus 192 ~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~ 241 (650)
+||++||.......+++++||+.+++|+.++ +++.+|..++++++++
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLP---SMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCCCCeEccCC---CCCCccccceEEEeCC
Confidence 4899999877677899999999999999987 7889999999988764
|
|
| >TIGR01640 F_box_assoc_1 F-box protein interaction domain | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0032 Score=63.70 Aligned_cols=200 Identities=16% Similarity=0.173 Sum_probs=113.6
Q ss_pred ceEEEEECCCCcEEEeecCCCCCCCCcce-EEEEEC-----CEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCC
Q 006334 53 GDVLMLNLDTMVWSTLATTGQGPGPRDSH-SAILWG-----HKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPS 126 (650)
Q Consensus 53 ~dv~~yD~~t~sW~~l~~~g~~P~pR~~h-sa~~~~-----~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~ 126 (650)
..++++||.|.+|..++...........+ ...-++ =||+.+...........+.+|+..++.|+.+... ++.
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~--~~~ 91 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLGSNSWRTIECS--PPH 91 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeCCCCccccccC--CCC
Confidence 57999999999999997532110001111 111122 1565554432222345789999999999997522 221
Q ss_pred CCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceee-ccccCCCCCCC----CcceeeeecCEEEEEeccCC
Q 006334 127 PRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWAS-PAVKGDIPVPR----DSHSSNVIANRLFVYGGDCG 201 (650)
Q Consensus 127 ~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~-i~~~~~lP~~R----~~hs~v~~~~~Iyv~GG~~~ 201 (650)
.......+.+ ++.||-+.-.... .....+..||+.+++|.. ++ +|..+ ....++.++++|.++.....
T Consensus 92 ~~~~~~~v~~-~G~lyw~~~~~~~--~~~~~IvsFDl~~E~f~~~i~----~P~~~~~~~~~~~L~~~~G~L~~v~~~~~ 164 (230)
T TIGR01640 92 HPLKSRGVCI-NGVLYYLAYTLKT--NPDYFIVSFDVSSERFKEFIP----LPCGNSDSVDYLSLINYKGKLAVLKQKKD 164 (230)
T ss_pred ccccCCeEEE-CCEEEEEEEECCC--CCcEEEEEEEcccceEeeeee----cCccccccccceEEEEECCEEEEEEecCC
Confidence 1112224444 7888887644211 111268999999999995 44 33322 23456677888888765432
Q ss_pred CCccCeEEEEE-CCCCcEEEeeecCCCCCccc----ceEEEEECCEEEEEeccCCCcccCe-EEEEECCCC
Q 006334 202 DQYHGDIDMLD-MNSLTWSRLAIIGSSPGVRA----GHAAINIGTKVYIIGGVGDKHYYND-IWILNVSTC 266 (650)
Q Consensus 202 ~~~~n~v~~yd-~~t~~W~~i~~~g~~P~~R~----~~s~v~~~~~IyI~GG~~~~~~~~d-v~~yD~~t~ 266 (650)
.. .-++|+++ -....|+++-.....+.... ....+..+++|++.... .... +..||+.++
T Consensus 165 ~~-~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~----~~~~~~~~y~~~~~ 230 (230)
T TIGR01640 165 TN-NFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCED----ENPFYIFYYNVGEN 230 (230)
T ss_pred CC-cEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCC----CCceEEEEEeccCC
Confidence 11 13677775 44567998665432112211 23445667888887542 1123 889998764
|
This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. |
| >TIGR01640 F_box_assoc_1 F-box protein interaction domain | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.025 Score=57.14 Aligned_cols=184 Identities=19% Similarity=0.192 Sum_probs=103.8
Q ss_pred CeEEEEECCCCcEEeeecCCCCCCC---CcccEEEE-E----cCCEEEEEccccCCCCcccceEEEEecCCCceeecccc
Q 006334 103 NDLHILDLESKEWMRPECRGAPPSP---RESHTATL-V----GDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVK 174 (650)
Q Consensus 103 ndv~~yD~~t~~W~~l~~~~~~P~~---R~~hs~~~-~----~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~ 174 (650)
..++++||.|++|..++. ++.+ ...+.... + .+=|++.+.... . ......+++|++.+++|..+...
T Consensus 14 ~~~~V~NP~T~~~~~LP~---~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~-~-~~~~~~~~Vys~~~~~Wr~~~~~ 88 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPT---PKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRS-G-NRNQSEHQVYTLGSNSWRTIECS 88 (230)
T ss_pred CcEEEECCCCCCEEecCC---CCCcccccccceEEEeecccCCcEEEEEEEeec-C-CCCCccEEEEEeCCCCccccccC
Confidence 578999999999999832 2211 11111111 1 012455554321 1 11235789999999999987621
Q ss_pred CCCCCCCCcceeeeecCEEEEEeccCCCCccCeEEEEECCCCcEEE-eeecCCCCCcc----cceEEEEECCEEEEEecc
Q 006334 175 GDIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSR-LAIIGSSPGVR----AGHAAINIGTKVYIIGGV 249 (650)
Q Consensus 175 ~~lP~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~-i~~~g~~P~~R----~~~s~v~~~~~IyI~GG~ 249 (650)
.+........+.+++.||-+.-.........+..||+.+.+|.+ ++ +|..+ .....+..+++|.++...
T Consensus 89 --~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~----~P~~~~~~~~~~~L~~~~G~L~~v~~~ 162 (230)
T TIGR01640 89 --PPHHPLKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIP----LPCGNSDSVDYLSLINYKGKLAVLKQK 162 (230)
T ss_pred --CCCccccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeee----cCccccccccceEEEEECCEEEEEEec
Confidence 12111222367789998887643321111269999999999995 54 23322 234567778888887653
Q ss_pred CCCcccCeEEEEE-CCCCcEEEeecCCC--CCCCcc--eeEEEEECCeEEEEcC
Q 006334 250 GDKHYYNDIWILN-VSTCSWSQLDTCGQ--QPQGRF--SHAAVVTGSDIVIYGG 298 (650)
Q Consensus 250 ~~~~~~~dv~~yD-~~t~~W~~l~~~~~--~p~~R~--~hsav~~~~~lyV~GG 298 (650)
... ..-+||+++ .....|+++-.... .+.-+. ....+..+++|++...
T Consensus 163 ~~~-~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~ 215 (230)
T TIGR01640 163 KDT-NNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCE 215 (230)
T ss_pred CCC-CcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeC
Confidence 221 225888886 44667998544321 111111 1233445677777654
|
This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.072 Score=58.42 Aligned_cols=248 Identities=16% Similarity=0.212 Sum_probs=135.7
Q ss_pred cCCCeEEeeecCCCCCCCcceeEEEEECCEEEEEccCCCCcccceEEEEECCCC--cEEEeecCCC-----CCCCCcceE
Q 006334 10 KRAAMWLYPKVLGFNPPERWGHSACYSHGAVYIFGGCCGGLHFGDVLMLNLDTM--VWSTLATTGQ-----GPGPRDSHS 82 (650)
Q Consensus 10 ~~~~~W~~~~~~g~~P~~R~ghs~v~~~~~IyvfGG~~~~~~~~dv~~yD~~t~--sW~~l~~~g~-----~P~pR~~hs 82 (650)
..+..|...-..+ .+......+.++.+++||+.... ..++.||..++ .|+.-..... .+.++...+
T Consensus 43 ~~~~~W~~~~g~g-~~~~~~~~sPvv~~~~vy~~~~~------g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~ 115 (394)
T PRK11138 43 TPTTVWSTSVGDG-VGDYYSRLHPAVAYNKVYAADRA------GLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGG 115 (394)
T ss_pred CcceeeEEEcCCC-CccceeeeccEEECCEEEEECCC------CeEEEEECCCCcEeeEEcCCCcccccccccccccccc
Confidence 3445787532222 22212233457789999997653 36899998755 4875322100 001233344
Q ss_pred EEEECCEEEEEcccCCCcCcCeEEEEECCCC--cEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEE
Q 006334 83 AILWGHKMIVFGGTNGYKKVNDLHILDLESK--EWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHV 160 (650)
Q Consensus 83 a~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~--~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~ 160 (650)
.++.+++||+.+. ...++.||.++. .|+.- .+... .+.-++.++.+|+..+. ..++.
T Consensus 116 ~~v~~~~v~v~~~------~g~l~ald~~tG~~~W~~~-----~~~~~--~ssP~v~~~~v~v~~~~--------g~l~a 174 (394)
T PRK11138 116 VTVAGGKVYIGSE------KGQVYALNAEDGEVAWQTK-----VAGEA--LSRPVVSDGLVLVHTSN--------GMLQA 174 (394)
T ss_pred cEEECCEEEEEcC------CCEEEEEECCCCCCccccc-----CCCce--ecCCEEECCEEEEECCC--------CEEEE
Confidence 5667889887432 246899999876 59763 11111 12222336777774332 35899
Q ss_pred EecCCCc--eeeccccCCCCC--CCCcceeeeecCEEEEEeccCCCCccCeEEEEECCCCc--EEEeeecC--CCCC---
Q 006334 161 LDLKTMR--WASPAVKGDIPV--PRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLT--WSRLAIIG--SSPG--- 229 (650)
Q Consensus 161 yd~~t~~--Wt~i~~~~~lP~--~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~--W~~i~~~g--~~P~--- 229 (650)
||.++++ |+.-. ..|. .+...+.+..++.+|+..+ + ..++.+|..+.+ |+.-.... ....
T Consensus 175 ld~~tG~~~W~~~~---~~~~~~~~~~~sP~v~~~~v~~~~~-~-----g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~ 245 (394)
T PRK11138 175 LNESDGAVKWTVNL---DVPSLTLRGESAPATAFGGAIVGGD-N-----GRVSAVLMEQGQLIWQQRISQPTGATEIDRL 245 (394)
T ss_pred EEccCCCEeeeecC---CCCcccccCCCCCEEECCEEEEEcC-C-----CEEEEEEccCChhhheeccccCCCccchhcc
Confidence 9998764 87532 1111 1222344455677766443 2 468888887764 86422100 0000
Q ss_pred cccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCc--EEEeecCCCCCCCcceeEEEEECCeEEEEcCCCCCCCCCC
Q 006334 230 VRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCS--WSQLDTCGQQPQGRFSHAAVVTGSDIVIYGGCGEDERPLN 307 (650)
Q Consensus 230 ~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~--W~~l~~~~~~p~~R~~hsav~~~~~lyV~GG~~~~~~~~~ 307 (650)
.....+-++.++.+|+.+. ...++++|+.+.+ |+.-. ... ...++.++.||+... ..
T Consensus 246 ~~~~~sP~v~~~~vy~~~~------~g~l~ald~~tG~~~W~~~~-----~~~---~~~~~~~~~vy~~~~-------~g 304 (394)
T PRK11138 246 VDVDTTPVVVGGVVYALAY------NGNLVALDLRSGQIVWKREY-----GSV---NDFAVDGGRIYLVDQ-------ND 304 (394)
T ss_pred cccCCCcEEECCEEEEEEc------CCeEEEEECCCCCEEEeecC-----CCc---cCcEEECCEEEEEcC-------CC
Confidence 0112344567888888642 2479999998865 76521 111 134566888888743 23
Q ss_pred cEEEEecC
Q 006334 308 ELLVLQLG 315 (650)
Q Consensus 308 d~~~l~l~ 315 (650)
.++.++..
T Consensus 305 ~l~ald~~ 312 (394)
T PRK11138 305 RVYALDTR 312 (394)
T ss_pred eEEEEECC
Confidence 57777764
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.11 Score=56.87 Aligned_cols=196 Identities=17% Similarity=0.166 Sum_probs=108.6
Q ss_pred ceEEEEECCCCc--EEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEECCCC--cEEeeecCCCCCCC-
Q 006334 53 GDVLMLNLDTMV--WSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESK--EWMRPECRGAPPSP- 127 (650)
Q Consensus 53 ~dv~~yD~~t~s--W~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~--~W~~l~~~~~~P~~- 127 (650)
+.++.||..+++ |+.-..... ...+...+-++.++.+|+..+ ...++.+|..+. .|+.- . ..+...
T Consensus 170 g~l~ald~~tG~~~W~~~~~~~~-~~~~~~~sP~v~~~~v~~~~~------~g~v~a~d~~~G~~~W~~~-~-~~~~~~~ 240 (394)
T PRK11138 170 GMLQALNESDGAVKWTVNLDVPS-LTLRGESAPATAFGGAIVGGD------NGRVSAVLMEQGQLIWQQR-I-SQPTGAT 240 (394)
T ss_pred CEEEEEEccCCCEeeeecCCCCc-ccccCCCCCEEECCEEEEEcC------CCEEEEEEccCChhhheec-c-ccCCCcc
Confidence 358888887665 765322100 011222233445677766433 245888888876 48642 1 111100
Q ss_pred ---C---cccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCC--ceeeccccCCCCCCCCcceeeeecCEEEEEecc
Q 006334 128 ---R---ESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTM--RWASPAVKGDIPVPRDSHSSNVIANRLFVYGGD 199 (650)
Q Consensus 128 ---R---~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~--~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~ 199 (650)
| ...+-++. ++.+|+.+.. ..++++|+.+. .|+.-. ... ...+..++.||+...
T Consensus 241 ~~~~~~~~~~sP~v~-~~~vy~~~~~--------g~l~ald~~tG~~~W~~~~-----~~~---~~~~~~~~~vy~~~~- 302 (394)
T PRK11138 241 EIDRLVDVDTTPVVV-GGVVYALAYN--------GNLVALDLRSGQIVWKREY-----GSV---NDFAVDGGRIYLVDQ- 302 (394)
T ss_pred chhcccccCCCcEEE-CCEEEEEEcC--------CeEEEEECCCCCEEEeecC-----CCc---cCcEEECCEEEEEcC-
Confidence 1 11122333 6788875431 35889999876 487521 111 134566889998753
Q ss_pred CCCCccCeEEEEECCCCc--EEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCc--EEEeecCC
Q 006334 200 CGDQYHGDIDMLDMNSLT--WSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCS--WSQLDTCG 275 (650)
Q Consensus 200 ~~~~~~n~v~~yd~~t~~--W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~--W~~l~~~~ 275 (650)
...++.+|..+.+ |+.-. ...+...+.++.+++||+... ...++++|..+.+ |+.-
T Consensus 303 -----~g~l~ald~~tG~~~W~~~~-----~~~~~~~sp~v~~g~l~v~~~------~G~l~~ld~~tG~~~~~~~---- 362 (394)
T PRK11138 303 -----NDRVYALDTRGGVELWSQSD-----LLHRLLTAPVLYNGYLVVGDS------EGYLHWINREDGRFVAQQK---- 362 (394)
T ss_pred -----CCeEEEEECCCCcEEEcccc-----cCCCcccCCEEECCEEEEEeC------CCEEEEEECCCCCEEEEEE----
Confidence 2579999998764 76422 112333445567888887632 2368889988875 4431
Q ss_pred CCCCCcceeEEEEECCeEEEE
Q 006334 276 QQPQGRFSHAAVVTGSDIVIY 296 (650)
Q Consensus 276 ~~p~~R~~hsav~~~~~lyV~ 296 (650)
........+.++.++.|||-
T Consensus 363 -~~~~~~~s~P~~~~~~l~v~ 382 (394)
T PRK11138 363 -VDSSGFLSEPVVADDKLLIQ 382 (394)
T ss_pred -cCCCcceeCCEEECCEEEEE
Confidence 11223444556778888777
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.9 Score=49.28 Aligned_cols=224 Identities=19% Similarity=0.227 Sum_probs=119.9
Q ss_pred eEEEEECCEEEEEccCCCCcccceEEEEECCCCc--EEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEE
Q 006334 31 HSACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMV--WSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHIL 108 (650)
Q Consensus 31 hs~v~~~~~IyvfGG~~~~~~~~dv~~yD~~t~s--W~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~y 108 (650)
.+.++.++.||+.... ..++.||..+++ |..-... +...+.++.++.+|+.+ .+ ..++.|
T Consensus 59 ~~p~v~~~~v~v~~~~------g~v~a~d~~tG~~~W~~~~~~------~~~~~p~v~~~~v~v~~-~~-----g~l~al 120 (377)
T TIGR03300 59 LQPAVAGGKVYAADAD------GTVVALDAETGKRLWRVDLDE------RLSGGVGADGGLVFVGT-EK-----GEVIAL 120 (377)
T ss_pred cceEEECCEEEEECCC------CeEEEEEccCCcEeeeecCCC------CcccceEEcCCEEEEEc-CC-----CEEEEE
Confidence 3456678888886542 369999987654 8653222 11223345567777643 22 479999
Q ss_pred ECCCC--cEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCC--ceeeccccCCCCCCCCcc
Q 006334 109 DLESK--EWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTM--RWASPAVKGDIPVPRDSH 184 (650)
Q Consensus 109 D~~t~--~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~--~Wt~i~~~~~lP~~R~~h 184 (650)
|..+. .|+.- .+... ..+.+ +.++.+|+..+. ..++.+|++++ .|+.-...... ..+...
T Consensus 121 d~~tG~~~W~~~-----~~~~~-~~~p~-v~~~~v~v~~~~--------g~l~a~d~~tG~~~W~~~~~~~~~-~~~~~~ 184 (377)
T TIGR03300 121 DAEDGKELWRAK-----LSSEV-LSPPL-VANGLVVVRTND--------GRLTALDAATGERLWTYSRVTPAL-TLRGSA 184 (377)
T ss_pred ECCCCcEeeeec-----cCcee-ecCCE-EECCEEEEECCC--------CeEEEEEcCCCceeeEEccCCCce-eecCCC
Confidence 98776 48753 11111 11222 335777764331 35889998765 57743211110 112223
Q ss_pred eeeeecCEEEEEeccCCCCccCeEEEEECCCC--cEEEeeecC--CCCCcc---cceEEEEECCEEEEEeccCCCcccCe
Q 006334 185 SSNVIANRLFVYGGDCGDQYHGDIDMLDMNSL--TWSRLAIIG--SSPGVR---AGHAAINIGTKVYIIGGVGDKHYYND 257 (650)
Q Consensus 185 s~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~--~W~~i~~~g--~~P~~R---~~~s~v~~~~~IyI~GG~~~~~~~~d 257 (650)
+.+..++.+|+ |..+ ..++.+|+.+. .|+.-...+ .....| ...+.++.++.+|+... ...
T Consensus 185 sp~~~~~~v~~-~~~~-----g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~------~g~ 252 (377)
T TIGR03300 185 SPVIADGGVLV-GFAG-----GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSY------QGR 252 (377)
T ss_pred CCEEECCEEEE-ECCC-----CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEc------CCE
Confidence 44555665554 4322 37889998765 476422100 000001 12334456778887642 246
Q ss_pred EEEEECCCCc--EEEeecCCCCCCCcceeEEEEECCeEEEEcCCCCCCCCCCcEEEEecC
Q 006334 258 IWILNVSTCS--WSQLDTCGQQPQGRFSHAAVVTGSDIVIYGGCGEDERPLNELLVLQLG 315 (650)
Q Consensus 258 v~~yD~~t~~--W~~l~~~~~~p~~R~~hsav~~~~~lyV~GG~~~~~~~~~d~~~l~l~ 315 (650)
+++||+++.+ |..-. . ...+.++.++.||+... ...++.++..
T Consensus 253 l~a~d~~tG~~~W~~~~-----~---~~~~p~~~~~~vyv~~~-------~G~l~~~d~~ 297 (377)
T TIGR03300 253 VAALDLRSGRVLWKRDA-----S---SYQGPAVDDNRLYVTDA-------DGVVVALDRR 297 (377)
T ss_pred EEEEECCCCcEEEeecc-----C---CccCceEeCCEEEEECC-------CCeEEEEECC
Confidence 9999998764 65421 1 11234456778887742 2357777764
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.82 Score=45.63 Aligned_cols=186 Identities=23% Similarity=0.301 Sum_probs=106.7
Q ss_pred EEEECCEEEEEccCCCCcccceEEEEECCCCc--EEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEEC
Q 006334 33 ACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMV--WSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDL 110 (650)
Q Consensus 33 ~v~~~~~IyvfGG~~~~~~~~dv~~yD~~t~s--W~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~ 110 (650)
.+..++.+|+..+ ...++.||..+++ |+.-... +........++.||+..+- +.++.+|.
T Consensus 32 ~~~~~~~v~~~~~------~~~l~~~d~~tG~~~W~~~~~~------~~~~~~~~~~~~v~v~~~~------~~l~~~d~ 93 (238)
T PF13360_consen 32 AVPDGGRVYVASG------DGNLYALDAKTGKVLWRFDLPG------PISGAPVVDGGRVYVGTSD------GSLYALDA 93 (238)
T ss_dssp EEEETTEEEEEET------TSEEEEEETTTSEEEEEEECSS------CGGSGEEEETTEEEEEETT------SEEEEEET
T ss_pred EEEeCCEEEEEcC------CCEEEEEECCCCCEEEEeeccc------cccceeeecccccccccce------eeeEeccc
Confidence 3447899999742 4579999997765 6654321 2222247778999887621 37999998
Q ss_pred CCC--cEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCC--ceeeccccCCCCCC------
Q 006334 111 ESK--EWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTM--RWASPAVKGDIPVP------ 180 (650)
Q Consensus 111 ~t~--~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~--~Wt~i~~~~~lP~~------ 180 (650)
.+. .|+..... ..+..........+.++.+|+... ...++.+|++++ .|.... ..+..
T Consensus 94 ~tG~~~W~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--------~g~l~~~d~~tG~~~w~~~~---~~~~~~~~~~~ 161 (238)
T PF13360_consen 94 KTGKVLWSIYLTS-SPPAGVRSSSSPAVDGDRLYVGTS--------SGKLVALDPKTGKLLWKYPV---GEPRGSSPISS 161 (238)
T ss_dssp TTSCEEEEEEE-S-SCTCSTB--SEEEEETTEEEEEET--------CSEEEEEETTTTEEEEEEES---STT-SS--EEE
T ss_pred CCcceeeeecccc-ccccccccccCceEecCEEEEEec--------cCcEEEEecCCCcEEEEeec---CCCCCCcceee
Confidence 877 49832111 122222222223333566666543 136899998876 466522 11111
Q ss_pred --CCcceeeeecCEEEEEeccCCCCccCeEEEEECCCCc--EEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccC
Q 006334 181 --RDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLT--WSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYN 256 (650)
Q Consensus 181 --R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~--W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~ 256 (650)
......+..++.+|+..+.. .+..+|..+.+ |+.. .. -........++.+|+.. . ..
T Consensus 162 ~~~~~~~~~~~~~~v~~~~~~g------~~~~~d~~tg~~~w~~~-~~------~~~~~~~~~~~~l~~~~-~-----~~ 222 (238)
T PF13360_consen 162 FSDINGSPVISDGRVYVSSGDG------RVVAVDLATGEKLWSKP-IS------GIYSLPSVDGGTLYVTS-S-----DG 222 (238)
T ss_dssp ETTEEEEEECCTTEEEEECCTS------SEEEEETTTTEEEEEEC-SS-------ECECEECCCTEEEEEE-T-----TT
T ss_pred ecccccceEEECCEEEEEcCCC------eEEEEECCCCCEEEEec-CC------CccCCceeeCCEEEEEe-C-----CC
Confidence 11233344467888876632 26777999887 7432 11 11222455567777775 2 35
Q ss_pred eEEEEECCCCc
Q 006334 257 DIWILNVSTCS 267 (650)
Q Consensus 257 dv~~yD~~t~~ 267 (650)
.++++|+++++
T Consensus 223 ~l~~~d~~tG~ 233 (238)
T PF13360_consen 223 RLYALDLKTGK 233 (238)
T ss_dssp EEEEEETTTTE
T ss_pred EEEEEECCCCC
Confidence 89999999875
|
... |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.91 Score=49.25 Aligned_cols=209 Identities=20% Similarity=0.238 Sum_probs=110.5
Q ss_pred EECCEEEEEccCCCCcccceEEEEECCCCc--EEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEECCC
Q 006334 35 YSHGAVYIFGGCCGGLHFGDVLMLNLDTMV--WSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLES 112 (650)
Q Consensus 35 ~~~~~IyvfGG~~~~~~~~dv~~yD~~t~s--W~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t 112 (650)
+.++.+|+..+ ...++.+|..+++ |+.-..... ...+...+.++.++.+| +|..+ ..++.+|+.+
T Consensus 143 v~~~~v~v~~~------~g~l~a~d~~tG~~~W~~~~~~~~-~~~~~~~sp~~~~~~v~-~~~~~-----g~v~ald~~t 209 (377)
T TIGR03300 143 VANGLVVVRTN------DGRLTALDAATGERLWTYSRVTPA-LTLRGSASPVIADGGVL-VGFAG-----GKLVALDLQT 209 (377)
T ss_pred EECCEEEEECC------CCeEEEEEcCCCceeeEEccCCCc-eeecCCCCCEEECCEEE-EECCC-----CEEEEEEccC
Confidence 34555555332 2458888987654 765322100 01122233455566554 44322 3688999887
Q ss_pred C--cEEeeecCCCCCCC-----C---cccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCC--ceeeccccCCCCCC
Q 006334 113 K--EWMRPECRGAPPSP-----R---ESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTM--RWASPAVKGDIPVP 180 (650)
Q Consensus 113 ~--~W~~l~~~~~~P~~-----R---~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~--~Wt~i~~~~~lP~~ 180 (650)
. .|+.-. ..+.. + ...+.+ +.++.+|+.... ..+++||..+. .|..- ..
T Consensus 210 G~~~W~~~~---~~~~g~~~~~~~~~~~~~p~-~~~~~vy~~~~~--------g~l~a~d~~tG~~~W~~~-----~~-- 270 (377)
T TIGR03300 210 GQPLWEQRV---ALPKGRTELERLVDVDGDPV-VDGGQVYAVSYQ--------GRVAALDLRSGRVLWKRD-----AS-- 270 (377)
T ss_pred CCEeeeecc---ccCCCCCchhhhhccCCccE-EECCEEEEEEcC--------CEEEEEECCCCcEEEeec-----cC--
Confidence 6 476421 11111 1 111222 335777775432 35889998765 47642 11
Q ss_pred CCcceeeeecCEEEEEeccCCCCccCeEEEEECCCC--cEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeE
Q 006334 181 RDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSL--TWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDI 258 (650)
Q Consensus 181 R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~--~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv 258 (650)
...+.+..++++|+... ...++++|..+. .|+.-. . ..+...+.++.++.||+.. ....+
T Consensus 271 -~~~~p~~~~~~vyv~~~------~G~l~~~d~~tG~~~W~~~~----~-~~~~~ssp~i~g~~l~~~~------~~G~l 332 (377)
T TIGR03300 271 -SYQGPAVDDNRLYVTDA------DGVVVALDRRSGSELWKNDE----L-KYRQLTAPAVVGGYLVVGD------FEGYL 332 (377)
T ss_pred -CccCceEeCCEEEEECC------CCeEEEEECCCCcEEEcccc----c-cCCccccCEEECCEEEEEe------CCCEE
Confidence 12234556888988643 247999998765 476522 1 1122333455677777752 12468
Q ss_pred EEEECCCCc--EEEeecCCCCCCCcceeEEEEECCeEEEEcC
Q 006334 259 WILNVSTCS--WSQLDTCGQQPQGRFSHAAVVTGSDIVIYGG 298 (650)
Q Consensus 259 ~~yD~~t~~--W~~l~~~~~~p~~R~~hsav~~~~~lyV~GG 298 (650)
+++|..+.+ |+. + ........+.++.+++|||.+.
T Consensus 333 ~~~d~~tG~~~~~~-~----~~~~~~~~sp~~~~~~l~v~~~ 369 (377)
T TIGR03300 333 HWLSREDGSFVARL-K----TDGSGIASPPVVVGDGLLVQTR 369 (377)
T ss_pred EEEECCCCCEEEEE-E----cCCCccccCCEEECCEEEEEeC
Confidence 899987664 432 2 1222344556777888776643
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >cd00094 HX Hemopexin-like repeats | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.78 Score=45.25 Aligned_cols=154 Identities=14% Similarity=0.139 Sum_probs=81.3
Q ss_pred EEEECCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCC-CCCcccEEEEEcC-CEEEEEccccCCCCcccceEEE
Q 006334 83 AILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPP-SPRESHTATLVGD-DKMVIFGGSGEGEANYLNDLHV 160 (650)
Q Consensus 83 a~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P-~~R~~hs~~~~~~-~~Lyv~GG~~~~~~~~~~dv~~ 160 (650)
++...+++|+|-| +.+|+++..........+....| .+..--++....+ +++|+|-|. ..|+
T Consensus 12 ~~~~~g~~y~FkG-------~~~w~~~~~~~~~~p~~I~~~w~~~p~~IDAa~~~~~~~~~yfFkg~---------~yw~ 75 (194)
T cd00094 12 VTTLRGELYFFKG-------RYFWRLSPGKPPGSPFLISSFWPSLPSPVDAAFERPDTGKIYFFKGD---------KYWV 75 (194)
T ss_pred EEEeCCEEEEEeC-------CEEEEEeCCCCCCCCeEhhhhCCCCCCCccEEEEECCCCEEEEECCC---------EEEE
Confidence 3444699999977 46888876522211111111111 1222334444444 899999774 4888
Q ss_pred EecCCCceeeccccC--CCCC--CCCcceeeee-cCEEEEEeccCCCCccCeEEEEECCCCcEEE-----eee-cCCCCC
Q 006334 161 LDLKTMRWASPAVKG--DIPV--PRDSHSSNVI-ANRLFVYGGDCGDQYHGDIDMLDMNSLTWSR-----LAI-IGSSPG 229 (650)
Q Consensus 161 yd~~t~~Wt~i~~~~--~lP~--~R~~hs~v~~-~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~-----i~~-~g~~P~ 229 (650)
||..+..+.-..... .++. .....+.... ++++|+|.| +..|+||..+.+... +.. -..+|.
T Consensus 76 ~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg-------~~y~ry~~~~~~v~~~yP~~i~~~w~g~p~ 148 (194)
T cd00094 76 YTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG-------DKYWRYDEKTQKMDPGYPKLIETDFPGVPD 148 (194)
T ss_pred EcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC-------CEEEEEeCCCccccCCCCcchhhcCCCcCC
Confidence 886643332111000 1111 1122222222 579999988 678999876654321 110 011222
Q ss_pred cccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCc
Q 006334 230 VRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCS 267 (650)
Q Consensus 230 ~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~ 267 (650)
....+....++++|+|-| +..|+||..+++
T Consensus 149 -~idaa~~~~~~~~yfF~g-------~~y~~~d~~~~~ 178 (194)
T cd00094 149 -KVDAAFRWLDGYYYFFKG-------DQYWRFDPRSKE 178 (194)
T ss_pred -CcceeEEeCCCcEEEEEC-------CEEEEEeCccce
Confidence 122333333478999977 479999998775
|
; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat. |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=95.62 E-value=3 Score=42.32 Aligned_cols=200 Identities=11% Similarity=0.093 Sum_probs=108.0
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEcccCCCcCcCeEEEEECCCCc
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW--GHKMIVFGGTNGYKKVNDLHILDLESKE 114 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~--~~~lyVfGG~~~~~~~ndv~~yD~~t~~ 114 (650)
++.||+.-- ....++++|+.+..-..+... . ..++++. ++++|+... ..+.++|+.+.+
T Consensus 11 ~g~l~~~D~-----~~~~i~~~~~~~~~~~~~~~~----~---~~G~~~~~~~g~l~v~~~-------~~~~~~d~~~g~ 71 (246)
T PF08450_consen 11 DGRLYWVDI-----PGGRIYRVDPDTGEVEVIDLP----G---PNGMAFDRPDGRLYVADS-------GGIAVVDPDTGK 71 (246)
T ss_dssp TTEEEEEET-----TTTEEEEEETTTTEEEEEESS----S---EEEEEEECTTSEEEEEET-------TCEEEEETTTTE
T ss_pred CCEEEEEEc-----CCCEEEEEECCCCeEEEEecC----C---CceEEEEccCCEEEEEEc-------CceEEEecCCCc
Confidence 467777633 235799999999876655443 1 3444544 688888654 345777999999
Q ss_pred EEeeecCCCCC-CCCcccEEEEEcCCEEEEEccccCCCCccc--ceEEEEecCCCceeeccccCCCCCCCCcceeeee-c
Q 006334 115 WMRPECRGAPP-SPRESHTATLVGDDKMVIFGGSGEGEANYL--NDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI-A 190 (650)
Q Consensus 115 W~~l~~~~~~P-~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~--~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~-~ 190 (650)
++.+....... ......-+++..++.||+---. ....... ..++++++. .+...+.. .+. .-..++.. +
T Consensus 72 ~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~-~~~~~~~~~g~v~~~~~~-~~~~~~~~--~~~---~pNGi~~s~d 144 (246)
T PF08450_consen 72 VTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSG-GGGASGIDPGSVYRIDPD-GKVTVVAD--GLG---FPNGIAFSPD 144 (246)
T ss_dssp EEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEEC-CBCTTCGGSEEEEEEETT-SEEEEEEE--EES---SEEEEEEETT
T ss_pred EEEEeeccCCCcccCCCceEEEcCCCCEEEEecC-CCccccccccceEEECCC-CeEEEEec--Ccc---cccceEECCc
Confidence 98763321111 2222334455567887774221 1111112 679999988 66554331 111 11223322 3
Q ss_pred -CEEEEEeccCCCCccCeEEEEECC--CCcEEEeeecCCCCCcc-cceEEEE-ECCEEEEEeccCCCcccCeEEEEECCC
Q 006334 191 -NRLFVYGGDCGDQYHGDIDMLDMN--SLTWSRLAIIGSSPGVR-AGHAAIN-IGTKVYIIGGVGDKHYYNDIWILNVST 265 (650)
Q Consensus 191 -~~Iyv~GG~~~~~~~n~v~~yd~~--t~~W~~i~~~g~~P~~R-~~~s~v~-~~~~IyI~GG~~~~~~~~dv~~yD~~t 265 (650)
+.||+.- ...+.+++|++. ...+.........+... .--.+++ .++.||+..- ....|++||++-
T Consensus 145 g~~lyv~d-----s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~-----~~~~I~~~~p~G 214 (246)
T PF08450_consen 145 GKTLYVAD-----SFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW-----GGGRIVVFDPDG 214 (246)
T ss_dssp SSEEEEEE-----TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE-----TTTEEEEEETTS
T ss_pred chheeecc-----cccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc-----CCCEEEEECCCc
Confidence 4577642 234679999885 33344333211222221 2223333 3578999832 235899999996
Q ss_pred CcEEEee
Q 006334 266 CSWSQLD 272 (650)
Q Consensus 266 ~~W~~l~ 272 (650)
..-..+.
T Consensus 215 ~~~~~i~ 221 (246)
T PF08450_consen 215 KLLREIE 221 (246)
T ss_dssp CEEEEEE
T ss_pred cEEEEEc
Confidence 6666665
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >cd00094 HX Hemopexin-like repeats | Back alignment and domain information |
|---|
Probab=95.55 E-value=1 Score=44.40 Aligned_cols=153 Identities=18% Similarity=0.159 Sum_probs=80.7
Q ss_pred EEEECCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCC-CCCcceEEEEE-C-CEEEEEcccCCCcCcCeEEEEE
Q 006334 33 ACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGP-GPRDSHSAILW-G-HKMIVFGGTNGYKKVNDLHILD 109 (650)
Q Consensus 33 ~v~~~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P-~pR~~hsa~~~-~-~~lyVfGG~~~~~~~ndv~~yD 109 (650)
++...+.+|+|-| +.+|+++...............| .+..--++... . +++|+|-| +.+|+||
T Consensus 12 ~~~~~g~~y~FkG-------~~~w~~~~~~~~~~p~~I~~~w~~~p~~IDAa~~~~~~~~~yfFkg-------~~yw~~~ 77 (194)
T cd00094 12 VTTLRGELYFFKG-------RYFWRLSPGKPPGSPFLISSFWPSLPSPVDAAFERPDTGKIYFFKG-------DKYWVYT 77 (194)
T ss_pred EEEeCCEEEEEeC-------CEEEEEeCCCCCCCCeEhhhhCCCCCCCccEEEEECCCCEEEEECC-------CEEEEEc
Confidence 3445699999988 36888876522222211111111 11111222232 3 89999977 5788898
Q ss_pred CCCCcEE---eeecCCCCCCCCcccEEEEEc-CCEEEEEccccCCCCcccceEEEEecCCCceee-----ccc-cCCCCC
Q 006334 110 LESKEWM---RPECRGAPPSPRESHTATLVG-DDKMVIFGGSGEGEANYLNDLHVLDLKTMRWAS-----PAV-KGDIPV 179 (650)
Q Consensus 110 ~~t~~W~---~l~~~~~~P~~R~~hs~~~~~-~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~-----i~~-~~~lP~ 179 (650)
..+..+. .+..-+.++.+..--++.... ++++|+|-|. ..|+||..+++... +.. -..+|.
T Consensus 78 ~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg~---------~y~ry~~~~~~v~~~yP~~i~~~w~g~p~ 148 (194)
T cd00094 78 GKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKGD---------KYWRYDEKTQKMDPGYPKLIETDFPGVPD 148 (194)
T ss_pred CcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeCC---------EEEEEeCCCccccCCCCcchhhcCCCcCC
Confidence 7642221 111001111112223333343 6899999884 47888876554321 100 012332
Q ss_pred CCCcceeeeec-CEEEEEeccCCCCccCeEEEEECCCCc
Q 006334 180 PRDSHSSNVIA-NRLFVYGGDCGDQYHGDIDMLDMNSLT 217 (650)
Q Consensus 180 ~R~~hs~v~~~-~~Iyv~GG~~~~~~~n~v~~yd~~t~~ 217 (650)
. -.++.... +++|+|-| +..++||..+.+
T Consensus 149 ~--idaa~~~~~~~~yfF~g-------~~y~~~d~~~~~ 178 (194)
T cd00094 149 K--VDAAFRWLDGYYYFFKG-------DQYWRFDPRSKE 178 (194)
T ss_pred C--cceeEEeCCCcEEEEEC-------CEEEEEeCccce
Confidence 1 22333344 89999988 689999988765
|
; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat. |
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.75 Score=48.25 Aligned_cols=113 Identities=17% Similarity=0.286 Sum_probs=68.2
Q ss_pred cCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeecccc--CCCCC
Q 006334 102 VNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVK--GDIPV 179 (650)
Q Consensus 102 ~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~--~~lP~ 179 (650)
...++.||..+.+|..+ +..... .-..+....+++||+.|-.... ......+-.||..+.+|+.+... ..+|.
T Consensus 15 C~~lC~yd~~~~qW~~~---g~~i~G-~V~~l~~~~~~~Llv~G~ft~~-~~~~~~la~yd~~~~~w~~~~~~~s~~ipg 89 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSP---GNGISG-TVTDLQWASNNQLLVGGNFTLN-GTNSSNLATYDFKNQTWSSLGGGSSNSIPG 89 (281)
T ss_pred CCEEEEEECCCCEeecC---CCCceE-EEEEEEEecCCEEEEEEeeEEC-CCCceeEEEEecCCCeeeecCCcccccCCC
Confidence 68899999999999886 222111 1223333346788877755322 22345688999999999887642 24555
Q ss_pred CCCcceeeeec-CEEEEEeccCCCCccCeEEEEECCCCcEEEeee
Q 006334 180 PRDSHSSNVIA-NRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAI 223 (650)
Q Consensus 180 ~R~~hs~v~~~-~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~ 223 (650)
+.........+ +.+++.|... .-..-+..| +..+|..+..
T Consensus 90 pv~a~~~~~~d~~~~~~aG~~~--~g~~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 90 PVTALTFISNDGSNFWVAGRSA--NGSTFLMKY--DGSSWSSIGS 130 (281)
T ss_pred cEEEEEeeccCCceEEEeceec--CCCceEEEE--cCCceEeccc
Confidence 53222222223 4677777642 122345556 4778999874
|
|
| >PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.73 Score=49.80 Aligned_cols=118 Identities=16% Similarity=0.245 Sum_probs=74.6
Q ss_pred cCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeeecCEEEEEeccCCCCc-------cCeEE
Q 006334 137 GDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQY-------HGDID 209 (650)
Q Consensus 137 ~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~~~~-------~n~v~ 209 (650)
.+++|+.++.. ..+.+||.++..-...+ .++.+...-.++.++++||++........ .-++.
T Consensus 75 ~gskIv~~d~~--------~~t~vyDt~t~av~~~P---~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l 143 (342)
T PF07893_consen 75 HGSKIVAVDQS--------GRTLVYDTDTRAVATGP---RLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEAL 143 (342)
T ss_pred cCCeEEEEcCC--------CCeEEEECCCCeEeccC---CCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEe
Confidence 46888888654 23789999988777544 55555566677778999999988543221 22333
Q ss_pred EEE--------CCCCcEEEeeecCCCCCccc-------ceEEEEE-CCEEEE-EeccCCCcccCeEEEEECCCCcEEEee
Q 006334 210 MLD--------MNSLTWSRLAIIGSSPGVRA-------GHAAINI-GTKVYI-IGGVGDKHYYNDIWILNVSTCSWSQLD 272 (650)
Q Consensus 210 ~yd--------~~t~~W~~i~~~g~~P~~R~-------~~s~v~~-~~~IyI-~GG~~~~~~~~dv~~yD~~t~~W~~l~ 272 (650)
.|+ .....|..++ ++|..+. -.+-+++ +.+|+| .-|.. .-.|.||..+.+|+.+.
T Consensus 144 ~~~~~~~~~~~~~~w~W~~LP---~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-----~GTysfDt~~~~W~~~G 215 (342)
T PF07893_consen 144 VYRPPPDDPSPEESWSWRSLP---PPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-----WGTYSFDTESHEWRKHG 215 (342)
T ss_pred ccccccccccCCCcceEEcCC---CCCccccCCcccceEEEEEEecCCeEEEEecCCc-----eEEEEEEcCCcceeecc
Confidence 344 2344677766 3443332 2334445 568888 32221 24899999999999984
Q ss_pred c
Q 006334 273 T 273 (650)
Q Consensus 273 ~ 273 (650)
.
T Consensus 216 d 216 (342)
T PF07893_consen 216 D 216 (342)
T ss_pred c
Confidence 3
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=94.75 E-value=7.8 Score=43.07 Aligned_cols=193 Identities=13% Similarity=0.081 Sum_probs=97.9
Q ss_pred ceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECC-EEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCccc
Q 006334 53 GDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGH-KMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESH 131 (650)
Q Consensus 53 ~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~-~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h 131 (650)
..+|++|+.++....+... +.. .......-++ +|++....++ ..++|.+|+.+...+.+.. .+. ...
T Consensus 226 ~~i~~~dl~~g~~~~l~~~---~g~-~~~~~~SPDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~Lt~---~~~--~~~ 293 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNF---PGM-TFAPRFSPDGRKVVMSLSQGG---NTDIYTMDLRSGTTTRLTD---SPA--IDT 293 (435)
T ss_pred CEEEEEECCCCcEEEeecC---CCc-ccCcEECCCCCEEEEEEecCC---CceEEEEECCCCceEEccC---CCC--ccC
Confidence 5899999999887776543 211 1122223355 4444332222 3689999999988776521 111 111
Q ss_pred EEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeeecCEEEEEeccCCCCccCeEEEE
Q 006334 132 TATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDML 211 (650)
Q Consensus 132 s~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~y 211 (650)
......+++.++|..... . ...+|++|..+.....+... ..........-+++.+++...... ...++.+
T Consensus 294 ~~~~spDG~~i~f~s~~~--g--~~~Iy~~d~~g~~~~~lt~~----~~~~~~~~~SpdG~~ia~~~~~~~--~~~i~~~ 363 (435)
T PRK05137 294 SPSYSPDGSQIVFESDRS--G--SPQLYVMNADGSNPRRISFG----GGRYSTPVWSPRGDLIAFTKQGGG--QFSIGVM 363 (435)
T ss_pred ceeEcCCCCEEEEEECCC--C--CCeEEEEECCCCCeEEeecC----CCcccCeEECCCCCEEEEEEcCCC--ceEEEEE
Confidence 123333555444433211 1 24789999887766665411 111111111223433333322221 2478899
Q ss_pred ECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcc-cCeEEEEECCCCcEEEee
Q 006334 212 DMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHY-YNDIWILNVSTCSWSQLD 272 (650)
Q Consensus 212 d~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~-~~dv~~yD~~t~~W~~l~ 272 (650)
|+.+.....+... .........-+++.+++-....... ...+|.+|+....-..+.
T Consensus 364 d~~~~~~~~lt~~-----~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~ 420 (435)
T PRK05137 364 KPDGSGERILTSG-----FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVP 420 (435)
T ss_pred ECCCCceEeccCC-----CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEcc
Confidence 9877766555421 1122223334555555543322221 257999999887666654
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=94.55 E-value=5.5 Score=39.59 Aligned_cols=209 Identities=22% Similarity=0.282 Sum_probs=114.7
Q ss_pred ceEEEEECCCCc--EEEeecCCCCCCCCcceE--EEEECCEEEEEcccCCCcCcCeEEEEECCCCc--EEeeecCCCCCC
Q 006334 53 GDVLMLNLDTMV--WSTLATTGQGPGPRDSHS--AILWGHKMIVFGGTNGYKKVNDLHILDLESKE--WMRPECRGAPPS 126 (650)
Q Consensus 53 ~dv~~yD~~t~s--W~~l~~~g~~P~pR~~hs--a~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~--W~~l~~~~~~P~ 126 (650)
..+..+|+.+++ |+.-. . . ...... .+..++.+|+.. ....++.||..+.+ |+.- .+.
T Consensus 3 g~l~~~d~~tG~~~W~~~~-~-~---~~~~~~~~~~~~~~~v~~~~------~~~~l~~~d~~tG~~~W~~~-----~~~ 66 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYDL-G-P---GIGGPVATAVPDGGRVYVAS------GDGNLYALDAKTGKVLWRFD-----LPG 66 (238)
T ss_dssp SEEEEEETTTTEEEEEEEC-S-S---SCSSEEETEEEETTEEEEEE------TTSEEEEEETTTSEEEEEEE-----CSS
T ss_pred CEEEEEECCCCCEEEEEEC-C-C---CCCCccceEEEeCCEEEEEc------CCCEEEEEECCCCCEEEEee-----ccc
Confidence 357888886654 76632 1 1 122222 344788999873 24689999998874 7763 122
Q ss_pred CCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCC--ceee-ccccCCCCCCCCcceeeeecCEEEEEeccCCCC
Q 006334 127 PRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTM--RWAS-PAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQ 203 (650)
Q Consensus 127 ~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~--~Wt~-i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~~~ 203 (650)
+-... .. ..++.+|+.... +.++.+|..+. .|+. ........ .+........++.+|+...
T Consensus 67 ~~~~~-~~-~~~~~v~v~~~~--------~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----- 130 (238)
T PF13360_consen 67 PISGA-PV-VDGGRVYVGTSD--------GSLYALDAKTGKVLWSIYLTSSPPAG-VRSSSSPAVDGDRLYVGTS----- 130 (238)
T ss_dssp CGGSG-EE-EETTEEEEEETT--------SEEEEEETTTSCEEEEEEE-SSCTCS-TB--SEEEEETTEEEEEET-----
T ss_pred cccce-ee-ecccccccccce--------eeeEecccCCcceeeeeccccccccc-cccccCceEecCEEEEEec-----
Confidence 11122 33 336888876521 26899997765 5883 32111111 2223334444667776653
Q ss_pred ccCeEEEEECCCCc--EEEeeecCCCCC-------cccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCc--EEEee
Q 006334 204 YHGDIDMLDMNSLT--WSRLAIIGSSPG-------VRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCS--WSQLD 272 (650)
Q Consensus 204 ~~n~v~~yd~~t~~--W~~i~~~g~~P~-------~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~--W~~l~ 272 (650)
...++.+|+.+++ |..-.. ..+. .......+..++.+|+..+.. .+..+|..++. |+..
T Consensus 131 -~g~l~~~d~~tG~~~w~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g------~~~~~d~~tg~~~w~~~- 200 (238)
T PF13360_consen 131 -SGKLVALDPKTGKLLWKYPVG--EPRGSSPISSFSDINGSPVISDGRVYVSSGDG------RVVAVDLATGEKLWSKP- 200 (238)
T ss_dssp -CSEEEEEETTTTEEEEEEESS--TT-SS--EEEETTEEEEEECCTTEEEEECCTS------SEEEEETTTTEEEEEEC-
T ss_pred -cCcEEEEecCCCcEEEEeecC--CCCCCcceeeecccccceEEECCEEEEEcCCC------eEEEEECCCCCEEEEec-
Confidence 2589999998775 666331 1111 011234444567888886532 26777999987 7433
Q ss_pred cCCCCCCCcceeEEEEECCeEEEEcCCCCCCCCCCcEEEEecCC
Q 006334 273 TCGQQPQGRFSHAAVVTGSDIVIYGGCGEDERPLNELLVLQLGA 316 (650)
Q Consensus 273 ~~~~~p~~R~~hsav~~~~~lyV~GG~~~~~~~~~d~~~l~l~~ 316 (650)
.. .........++.||+.. . ...++.+|+.+
T Consensus 201 ~~------~~~~~~~~~~~~l~~~~-~------~~~l~~~d~~t 231 (238)
T PF13360_consen 201 IS------GIYSLPSVDGGTLYVTS-S------DGRLYALDLKT 231 (238)
T ss_dssp SS-------ECECEECCCTEEEEEE-T------TTEEEEEETTT
T ss_pred CC------CccCCceeeCCEEEEEe-C------CCEEEEEECCC
Confidence 21 11112334456666664 1 25788888763
|
... |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=94.45 E-value=9.2 Score=41.78 Aligned_cols=193 Identities=12% Similarity=0.067 Sum_probs=99.5
Q ss_pred ccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcc
Q 006334 51 HFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRES 130 (650)
Q Consensus 51 ~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~ 130 (650)
....+|+.|.....=..+...+. .........+++.++|....+. ...++++|+.+...+.+.. .....
T Consensus 168 ~~~~l~~~d~~g~~~~~l~~~~~----~~~~p~~Spdg~~la~~~~~~~--~~~i~v~d~~~g~~~~~~~---~~~~~-- 236 (417)
T TIGR02800 168 RRYELQVADYDGANPQTITRSRE----PILSPAWSPDGQKLAYVSFESG--KPEIYVQDLATGQREKVAS---FPGMN-- 236 (417)
T ss_pred CcceEEEEcCCCCCCEEeecCCC----ceecccCCCCCCEEEEEEcCCC--CcEEEEEECCCCCEEEeec---CCCCc--
Confidence 34568888876443233322211 1112223335665556544332 2679999999887666521 11111
Q ss_pred cEEEEEcCC-EEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceee-eecC-EEEEEeccCCCCccCe
Q 006334 131 HTATLVGDD-KMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSN-VIAN-RLFVYGGDCGDQYHGD 207 (650)
Q Consensus 131 hs~~~~~~~-~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v-~~~~-~Iyv~GG~~~~~~~n~ 207 (650)
.+.....++ .|++..... . ..++|.+|+.++....+...... ..... .-++ +|++.....+ ...
T Consensus 237 ~~~~~spDg~~l~~~~~~~-~----~~~i~~~d~~~~~~~~l~~~~~~-----~~~~~~s~dg~~l~~~s~~~g---~~~ 303 (417)
T TIGR02800 237 GAPAFSPDGSKLAVSLSKD-G----NPDIYVMDLDGKQLTRLTNGPGI-----DTEPSWSPDGKSIAFTSDRGG---SPQ 303 (417)
T ss_pred cceEECCCCCEEEEEECCC-C----CccEEEEECCCCCEEECCCCCCC-----CCCEEECCCCCEEEEEECCCC---Cce
Confidence 123333354 455443321 1 25799999988877765421111 11111 1234 4544432222 247
Q ss_pred EEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCcEEEeec
Q 006334 208 IDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLDT 273 (650)
Q Consensus 208 v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~~ 273 (650)
+|.+|+.+..+..+...+. .........+++.+++..... ....++.+|+.+..+..+..
T Consensus 304 iy~~d~~~~~~~~l~~~~~----~~~~~~~spdg~~i~~~~~~~--~~~~i~~~d~~~~~~~~l~~ 363 (417)
T TIGR02800 304 IYMMDADGGEVRRLTFRGG----YNASPSWSPDGDLIAFVHREG--GGFNIAVMDLDGGGERVLTD 363 (417)
T ss_pred EEEEECCCCCEEEeecCCC----CccCeEECCCCCEEEEEEccC--CceEEEEEeCCCCCeEEccC
Confidence 9999999888887763211 111122233456666654433 23579999999987776653
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=94.22 E-value=11 Score=41.69 Aligned_cols=190 Identities=12% Similarity=0.064 Sum_probs=96.1
Q ss_pred eEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEE
Q 006334 54 DVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTA 133 (650)
Q Consensus 54 dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~ 133 (650)
.+++.|.....=..+...+. ...+....-+++-++|..... ....+|++|+.+.+-+.+.. .+. .....
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~----~~~~p~wSpDG~~la~~s~~~--~~~~l~~~~l~~g~~~~l~~---~~g--~~~~~ 248 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSRE----PILSPRWSPDGKRIAYVSFEQ--KRPRIFVQNLDTGRREQITN---FEG--LNGAP 248 (430)
T ss_pred EEEEECCCCCCceEEecCCC----ceeeeeECCCCCEEEEEEcCC--CCCEEEEEECCCCCEEEccC---CCC--CcCCe
Confidence 57777776543223322211 111222223554443433322 23579999999988776521 111 11122
Q ss_pred EEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeee-ec-CEEEEEeccCCCCccCeEEEE
Q 006334 134 TLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNV-IA-NRLFVYGGDCGDQYHGDIDML 211 (650)
Q Consensus 134 ~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~-~~-~~Iyv~GG~~~~~~~n~v~~y 211 (650)
....+++.+++.-..+ . ..++|++|+++..+..+.. .+. ....... -+ ..|++.....+ ...+|.+
T Consensus 249 ~~SpDG~~la~~~~~~--g--~~~Iy~~d~~~~~~~~lt~---~~~--~~~~~~~spDg~~i~f~s~~~g---~~~iy~~ 316 (430)
T PRK00178 249 AWSPDGSKLAFVLSKD--G--NPEIYVMDLASRQLSRVTN---HPA--IDTEPFWGKDGRTLYFTSDRGG---KPQIYKV 316 (430)
T ss_pred EECCCCCEEEEEEccC--C--CceEEEEECCCCCeEEccc---CCC--CcCCeEECCCCCEEEEEECCCC---CceEEEE
Confidence 3333554333322211 1 2579999999988876552 111 1111222 13 34554432221 2579999
Q ss_pred ECCCCcEEEeeecCCCCCcccceEEEEECC-EEEEEeccCCCcccCeEEEEECCCCcEEEeec
Q 006334 212 DMNSLTWSRLAIIGSSPGVRAGHAAINIGT-KVYIIGGVGDKHYYNDIWILNVSTCSWSQLDT 273 (650)
Q Consensus 212 d~~t~~W~~i~~~g~~P~~R~~~s~v~~~~-~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~~ 273 (650)
|+.+.++..+...+ ..........++ .|++.. ..+. ..+++.+|+.+..++.+..
T Consensus 317 d~~~g~~~~lt~~~----~~~~~~~~Spdg~~i~~~~-~~~~--~~~l~~~dl~tg~~~~lt~ 372 (430)
T PRK00178 317 NVNGGRAERVTFVG----NYNARPRLSADGKTLVMVH-RQDG--NFHVAAQDLQRGSVRILTD 372 (430)
T ss_pred ECCCCCEEEeecCC----CCccceEECCCCCEEEEEE-ccCC--ceEEEEEECCCCCEEEccC
Confidence 99999888875221 111122223344 444443 2222 3469999999998888764
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.21 E-value=1.2 Score=48.61 Aligned_cols=152 Identities=13% Similarity=0.176 Sum_probs=92.2
Q ss_pred CCEEEEEcccCCCcCcCeEEEEECCCCcEEe-eecCCCCCCCCcccEEEEEcCCE-EEEEccccCCCCcccceEEEEecC
Q 006334 87 GHKMIVFGGTNGYKKVNDLHILDLESKEWMR-PECRGAPPSPRESHTATLVGDDK-MVIFGGSGEGEANYLNDLHVLDLK 164 (650)
Q Consensus 87 ~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~-l~~~~~~P~~R~~hs~~~~~~~~-Lyv~GG~~~~~~~~~~dv~~yd~~ 164 (650)
.--+++.+|+++. -.+|..|-+++.-.. +.... .| ...+....++. .++++|+. .-+|.||+.
T Consensus 224 ~~plllvaG~d~~---lrifqvDGk~N~~lqS~~l~~-fP----i~~a~f~p~G~~~i~~s~rr-------ky~ysyDle 288 (514)
T KOG2055|consen 224 TAPLLLVAGLDGT---LRIFQVDGKVNPKLQSIHLEK-FP----IQKAEFAPNGHSVIFTSGRR-------KYLYSYDLE 288 (514)
T ss_pred CCceEEEecCCCc---EEEEEecCccChhheeeeecc-Cc----cceeeecCCCceEEEecccc-------eEEEEeecc
Confidence 3468888988653 356666777665211 11111 11 22333333565 78888873 348999999
Q ss_pred CCceeeccccCCCCCCCCcceeeeecCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEE
Q 006334 165 TMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVY 244 (650)
Q Consensus 165 t~~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~Iy 244 (650)
+.+.+++.....++........+..++.++++-|..+ -++.+...++.|..-- .++......+....+.+||
T Consensus 289 ~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G-----~I~lLhakT~eli~s~---KieG~v~~~~fsSdsk~l~ 360 (514)
T KOG2055|consen 289 TAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNG-----HIHLLHAKTKELITSF---KIEGVVSDFTFSSDSKELL 360 (514)
T ss_pred ccccccccCCCCcccchhheeEecCCCCeEEEcccCc-----eEEeehhhhhhhhhee---eeccEEeeEEEecCCcEEE
Confidence 9999887754445533333444556666777777543 5677777787775422 1223333344444455788
Q ss_pred EEeccCCCcccCeEEEEECCCCc
Q 006334 245 IIGGVGDKHYYNDIWILNVSTCS 267 (650)
Q Consensus 245 I~GG~~~~~~~~dv~~yD~~t~~ 267 (650)
++||. ..+|++|+..+.
T Consensus 361 ~~~~~------GeV~v~nl~~~~ 377 (514)
T KOG2055|consen 361 ASGGT------GEVYVWNLRQNS 377 (514)
T ss_pred EEcCC------ceEEEEecCCcc
Confidence 88874 479999999874
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.20 E-value=9.6 Score=40.98 Aligned_cols=241 Identities=11% Similarity=0.075 Sum_probs=116.6
Q ss_pred CCCeEEeeecCCCCCCCcceeEEEEECCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCE
Q 006334 11 RAAMWLYPKVLGFNPPERWGHSACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW-GHK 89 (650)
Q Consensus 11 ~~~~W~~~~~~g~~P~~R~ghs~v~~~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~-~~~ 89 (650)
.-..|.+..... +.....-.++.+.++..|+.|.. .-+++-+-.-.+|+.+......|. ....+..+ ++.
T Consensus 74 gG~tW~~~~~~~-~~~~~~l~~v~~~~~~~~~~G~~------g~i~~S~DgG~tW~~~~~~~~~~~--~~~~i~~~~~~~ 144 (334)
T PRK13684 74 GGETWEERSLDL-PEENFRLISISFKGDEGWIVGQP------SLLLHTTDGGKNWTRIPLSEKLPG--SPYLITALGPGT 144 (334)
T ss_pred CCCCceECccCC-cccccceeeeEEcCCcEEEeCCC------ceEEEECCCCCCCeEccCCcCCCC--CceEEEEECCCc
Confidence 345788644322 11111122333345556665532 235555555678998853211121 22223333 345
Q ss_pred EEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEE-ecCCCce
Q 006334 90 MIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVL-DLKTMRW 168 (650)
Q Consensus 90 lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~y-d~~t~~W 168 (650)
+|+.|.. ..+++=+-.-.+|+.+.. +..-..+.+....++.++++|..+ .++.- |....+|
T Consensus 145 ~~~~g~~------G~i~~S~DgG~tW~~~~~----~~~g~~~~i~~~~~g~~v~~g~~G--------~i~~s~~~gg~tW 206 (334)
T PRK13684 145 AEMATNV------GAIYRTTDGGKNWEALVE----DAAGVVRNLRRSPDGKYVAVSSRG--------NFYSTWEPGQTAW 206 (334)
T ss_pred ceeeecc------ceEEEECCCCCCceeCcC----CCcceEEEEEECCCCeEEEEeCCc--------eEEEEcCCCCCeE
Confidence 6666542 235554445678998732 222234445555555555555432 23332 3334579
Q ss_pred eeccccCCCCCCCCcceeeee-cCEEEEEeccCCCCccCeEEEEE--CCCCcEEEeeecCCCCCc-ccceEEEEE-CCEE
Q 006334 169 ASPAVKGDIPVPRDSHSSNVI-ANRLFVYGGDCGDQYHGDIDMLD--MNSLTWSRLAIIGSSPGV-RAGHAAINI-GTKV 243 (650)
Q Consensus 169 t~i~~~~~lP~~R~~hs~v~~-~~~Iyv~GG~~~~~~~n~v~~yd--~~t~~W~~i~~~g~~P~~-R~~~s~v~~-~~~I 243 (650)
+.+. .+..+..++++.. ++.++++|.. ...++. -.-.+|+.+.. +.... ...++++.. ++.+
T Consensus 207 ~~~~----~~~~~~l~~i~~~~~g~~~~vg~~-------G~~~~~s~d~G~sW~~~~~--~~~~~~~~l~~v~~~~~~~~ 273 (334)
T PRK13684 207 TPHQ----RNSSRRLQSMGFQPDGNLWMLARG-------GQIRFNDPDDLESWSKPII--PEITNGYGYLDLAYRTPGEI 273 (334)
T ss_pred EEee----CCCcccceeeeEcCCCCEEEEecC-------CEEEEccCCCCCccccccC--CccccccceeeEEEcCCCCE
Confidence 8764 2233344444433 5778888652 223342 23357997642 11111 122333333 4578
Q ss_pred EEEeccCCCcccCeEEEEECCCCcEEEeecCCCCCCCcceeEEEEE-CCeEEEEcCC
Q 006334 244 YIIGGVGDKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVT-GSDIVIYGGC 299 (650)
Q Consensus 244 yI~GG~~~~~~~~dv~~yD~~t~~W~~l~~~~~~p~~R~~hsav~~-~~~lyV~GG~ 299 (650)
|++|.. .-++.-.-.-.+|+.+......+ ...+.++.. ++++|+.|..
T Consensus 274 ~~~G~~------G~v~~S~d~G~tW~~~~~~~~~~--~~~~~~~~~~~~~~~~~G~~ 322 (334)
T PRK13684 274 WAGGGN------GTLLVSKDGGKTWEKDPVGEEVP--SNFYKIVFLDPEKGFVLGQR 322 (334)
T ss_pred EEEcCC------CeEEEeCCCCCCCeECCcCCCCC--cceEEEEEeCCCceEEECCC
Confidence 888753 22343334456899875321222 234455555 6678887763
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=94.17 E-value=6.2 Score=43.34 Aligned_cols=211 Identities=11% Similarity=0.075 Sum_probs=113.3
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCcC------cCeEEEEE
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW-GHKMIVFGGTNGYKK------VNDLHILD 109 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~-~~~lyVfGG~~~~~~------~ndv~~yD 109 (650)
+++.++|+=..++.....++++|+.++....-.. +.+.... ++.. +++.|++...+.... ...+|+..
T Consensus 134 dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i----~~~~~~~-~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~ 208 (414)
T PF02897_consen 134 DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGI----ENPKFSS-VSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHK 208 (414)
T ss_dssp TSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEE----EEEESEE-EEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEE
T ss_pred CCCEEEEEecCCCCceEEEEEEECCCCcCcCCcc----cccccce-EEEeCCCCEEEEEEeCcccccccCCCCcEEEEEE
Confidence 4555565544444445579999999985433211 1122222 4444 456777766655433 67899999
Q ss_pred CCCCcEE--eeecCCCCCCCCc-ccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCC-----ceeeccccCCCCCCC
Q 006334 110 LESKEWM--RPECRGAPPSPRE-SHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTM-----RWASPAVKGDIPVPR 181 (650)
Q Consensus 110 ~~t~~W~--~l~~~~~~P~~R~-~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~-----~Wt~i~~~~~lP~~R 181 (650)
+.+..-. .+ - ..+.... ...+....+++.+++.-... .. .+++|.+|.... .|..+.. ...-
T Consensus 209 ~gt~~~~d~lv--f-e~~~~~~~~~~~~~s~d~~~l~i~~~~~--~~-~s~v~~~d~~~~~~~~~~~~~l~~----~~~~ 278 (414)
T PF02897_consen 209 LGTPQSEDELV--F-EEPDEPFWFVSVSRSKDGRYLFISSSSG--TS-ESEVYLLDLDDGGSPDAKPKLLSP----REDG 278 (414)
T ss_dssp TTS-GGG-EEE--E-C-TTCTTSEEEEEE-TTSSEEEEEEESS--SS-EEEEEEEECCCTTTSS-SEEEEEE----SSSS
T ss_pred CCCChHhCeeE--E-eecCCCcEEEEEEecCcccEEEEEEEcc--cc-CCeEEEEeccccCCCcCCcEEEeC----CCCc
Confidence 9887543 22 1 1122222 33344444555444332211 11 478999999875 7876541 1111
Q ss_pred CcceeeeecCEEEEEeccCCCCccCeEEEEECCCCc---EE-EeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCe
Q 006334 182 DSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLT---WS-RLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYND 257 (650)
Q Consensus 182 ~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~---W~-~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~d 257 (650)
..+.+...++.+|+.... +.....+..+++.+.. |. .+. +......--.+...+++|++.-= ......
T Consensus 279 ~~~~v~~~~~~~yi~Tn~--~a~~~~l~~~~l~~~~~~~~~~~l~---~~~~~~~l~~~~~~~~~Lvl~~~---~~~~~~ 350 (414)
T PF02897_consen 279 VEYYVDHHGDRLYILTND--DAPNGRLVAVDLADPSPAEWWTVLI---PEDEDVSLEDVSLFKDYLVLSYR---ENGSSR 350 (414)
T ss_dssp -EEEEEEETTEEEEEE-T--T-TT-EEEEEETTSTSGGGEEEEEE-----SSSEEEEEEEEETTEEEEEEE---ETTEEE
T ss_pred eEEEEEccCCEEEEeeCC--CCCCcEEEEecccccccccceeEEc---CCCCceeEEEEEEECCEEEEEEE---ECCccE
Confidence 223333457889988763 2344688999988765 66 443 22222344555667888887732 223568
Q ss_pred EEEEECCCCcEEEe
Q 006334 258 IWILNVSTCSWSQL 271 (650)
Q Consensus 258 v~~yD~~t~~W~~l 271 (650)
|.+||+. ..|...
T Consensus 351 l~v~~~~-~~~~~~ 363 (414)
T PF02897_consen 351 LRVYDLD-DGKESR 363 (414)
T ss_dssp EEEEETT--TEEEE
T ss_pred EEEEECC-CCcEEe
Confidence 9999998 334433
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=93.71 E-value=14 Score=41.30 Aligned_cols=192 Identities=12% Similarity=0.084 Sum_probs=99.6
Q ss_pred cceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCccc
Q 006334 52 FGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESH 131 (650)
Q Consensus 52 ~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h 131 (650)
...+|+.|.....-..+..... ........-+++.++|.-... ....+|++|+.+.+-+.+. ..+. ...
T Consensus 197 ~~~l~i~d~dG~~~~~l~~~~~----~~~~p~wSPDG~~La~~s~~~--g~~~L~~~dl~tg~~~~lt---~~~g--~~~ 265 (448)
T PRK04792 197 PYQLMIADYDGYNEQMLLRSPE----PLMSPAWSPDGRKLAYVSFEN--RKAEIFVQDIYTQVREKVT---SFPG--ING 265 (448)
T ss_pred ceEEEEEeCCCCCceEeecCCC----cccCceECCCCCEEEEEEecC--CCcEEEEEECCCCCeEEec---CCCC--CcC
Confidence 4577888876654444433211 112222333554444432211 1357999999988776652 1111 111
Q ss_pred EEEEEcCCE-EEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeee-ecC-EEEEEeccCCCCccCeE
Q 006334 132 TATLVGDDK-MVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNV-IAN-RLFVYGGDCGDQYHGDI 208 (650)
Q Consensus 132 s~~~~~~~~-Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~-~~~-~Iyv~GG~~~~~~~n~v 208 (650)
......+++ |++....+ . ..++|.+|+.+++.+.+.... . ....... -++ .|++.....+ ...+
T Consensus 266 ~~~wSPDG~~La~~~~~~---g--~~~Iy~~dl~tg~~~~lt~~~----~-~~~~p~wSpDG~~I~f~s~~~g---~~~I 332 (448)
T PRK04792 266 APRFSPDGKKLALVLSKD---G--QPEIYVVDIATKALTRITRHR----A-IDTEPSWHPDGKSLIFTSERGG---KPQI 332 (448)
T ss_pred CeeECCCCCEEEEEEeCC---C--CeEEEEEECCCCCeEECccCC----C-CccceEECCCCCEEEEEECCCC---CceE
Confidence 223333444 55443321 1 257999999998887665211 1 1111222 234 4544432222 2589
Q ss_pred EEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCcEEEeec
Q 006334 209 DMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLDT 273 (650)
Q Consensus 209 ~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~~ 273 (650)
|.+|+.+.++..+...+. .........+++.+++.+.... ..++|.+|+.+.....+..
T Consensus 333 y~~dl~~g~~~~Lt~~g~----~~~~~~~SpDG~~l~~~~~~~g--~~~I~~~dl~~g~~~~lt~ 391 (448)
T PRK04792 333 YRVNLASGKVSRLTFEGE----QNLGGSITPDGRSMIMVNRTNG--KFNIARQDLETGAMQVLTS 391 (448)
T ss_pred EEEECCCCCEEEEecCCC----CCcCeeECCCCCEEEEEEecCC--ceEEEEEECCCCCeEEccC
Confidence 999999999988753221 1111233334444444333322 3479999999998887753
|
|
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.84 Score=47.87 Aligned_cols=123 Identities=21% Similarity=0.282 Sum_probs=73.4
Q ss_pred EEccccC-CCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee-cCEEEEEeccCCCC-ccCeEEEEECCCCcEE
Q 006334 143 IFGGSGE-GEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI-ANRLFVYGGDCGDQ-YHGDIDMLDMNSLTWS 219 (650)
Q Consensus 143 v~GG~~~-~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~-~~~Iyv~GG~~~~~-~~n~v~~yd~~t~~W~ 219 (650)
++||.-+ .+.-.+..+..||..+.+|..+.. .+ .-.-..+... +++||+.|-..-.. ....+..||.++.+|+
T Consensus 2 ~VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g~--~i--~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~ 77 (281)
T PF12768_consen 2 YVGGSFTSAGSLPCPGLCLYDTDNSQWSSPGN--GI--SGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS 77 (281)
T ss_pred EEeeecCCCCCcCCCEEEEEECCCCEeecCCC--Cc--eEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee
Confidence 4566422 222246788899999999997541 11 1111233333 56777776543222 4567899999999999
Q ss_pred Eeeec--CCCCCcccceEEEEEC-CEEEEEeccCCCcccCeEEEEECCCCcEEEeec
Q 006334 220 RLAII--GSSPGVRAGHAAINIG-TKVYIIGGVGDKHYYNDIWILNVSTCSWSQLDT 273 (650)
Q Consensus 220 ~i~~~--g~~P~~R~~~s~v~~~-~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~~ 273 (650)
.+... ..+|.+.........+ +.+++.|... .-..-+..| +..+|..+..
T Consensus 78 ~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~--~g~~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 78 SLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSA--NGSTFLMKY--DGSSWSSIGS 130 (281)
T ss_pred ecCCcccccCCCcEEEEEeeccCCceEEEeceec--CCCceEEEE--cCCceEeccc
Confidence 98852 2355554333333333 3688877652 222345555 6779998865
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=92.98 E-value=20 Score=40.71 Aligned_cols=167 Identities=13% Similarity=0.140 Sum_probs=80.5
Q ss_pred cCeEEEEECCCCc--EEeeecCCCCCCCCcccEEEEE----cCC---EEEEEccccCCCCcccceEEEEecCCCc--eee
Q 006334 102 VNDLHILDLESKE--WMRPECRGAPPSPRESHTATLV----GDD---KMVIFGGSGEGEANYLNDLHVLDLKTMR--WAS 170 (650)
Q Consensus 102 ~ndv~~yD~~t~~--W~~l~~~~~~P~~R~~hs~~~~----~~~---~Lyv~GG~~~~~~~~~~dv~~yd~~t~~--Wt~ 170 (650)
.+.++.+|.++.+ |+.-........-+......+. .++ .++++|... ..++.+|.++.+ |+.
T Consensus 255 ~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~-------G~l~ald~~tG~~~W~~ 327 (488)
T cd00216 255 TDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKN-------GFFYVLDRTTGKLISAR 327 (488)
T ss_pred eeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCC-------ceEEEEECCCCcEeeEe
Confidence 4589999999874 8753111100000111111111 122 244455442 358899998764 774
Q ss_pred ccccCCCCCCCCcceeeeecCEEEEEeccC------------CCCccCeEEEEECCCCc--EEEeeecCC----CCCccc
Q 006334 171 PAVKGDIPVPRDSHSSNVIANRLFVYGGDC------------GDQYHGDIDMLDMNSLT--WSRLAIIGS----SPGVRA 232 (650)
Q Consensus 171 i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~------------~~~~~n~v~~yd~~t~~--W~~i~~~g~----~P~~R~ 232 (650)
-.. ...+....+.+|+-.... .......++.+|..+.+ |+.-..... ...+..
T Consensus 328 ~~~---------~~~~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~ 398 (488)
T cd00216 328 PEV---------EQPMAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHW 398 (488)
T ss_pred Eee---------ccccccCCceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCccc
Confidence 221 011112226666633211 11234578899988665 876431000 001122
Q ss_pred ceEEEEECCEEEEEeccCCCcccCeEEEEECCCCc--EEEeecCCCCCCCcceeEEE--EECCeEEEE
Q 006334 233 GHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCS--WSQLDTCGQQPQGRFSHAAV--VTGSDIVIY 296 (650)
Q Consensus 233 ~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~--W~~l~~~~~~p~~R~~hsav--~~~~~lyV~ 296 (650)
...+++.++.||+- .. ...++.||.++.+ |+. + ++. ....+.+ ..++++||.
T Consensus 399 ~~~~~~~g~~v~~g-~~-----dG~l~ald~~tG~~lW~~-~----~~~-~~~a~P~~~~~~g~~yv~ 454 (488)
T cd00216 399 GGSLATAGNLVFAG-AA-----DGYFRAFDATTGKELWKF-R----TPS-GIQATPMTYEVNGKQYVG 454 (488)
T ss_pred CcceEecCCeEEEE-CC-----CCeEEEEECCCCceeeEE-E----CCC-CceEcCEEEEeCCEEEEE
Confidence 33445555555554 32 2469999998875 764 2 222 2222333 458888876
|
The alignment model contains an 8-bladed beta-propeller. |
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=92.96 E-value=18 Score=40.20 Aligned_cols=230 Identities=12% Similarity=0.072 Sum_probs=110.0
Q ss_pred cceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCccc
Q 006334 52 FGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESH 131 (650)
Q Consensus 52 ~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h 131 (650)
..++|++|.....=..+..... ...+....-+++.++|...... ...+|++|+.+.+.+.+. ..+.. ..
T Consensus 181 ~~~l~~~d~dg~~~~~lt~~~~----~v~~p~wSpDG~~lay~s~~~g--~~~i~~~dl~~g~~~~l~---~~~g~--~~ 249 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLTDGSS----LVLTPRFSPNRQEITYMSYANG--RPRVYLLDLETGQRELVG---NFPGM--TF 249 (435)
T ss_pred ceEEEEECCCCCCcEEEecCCC----CeEeeEECCCCCEEEEEEecCC--CCEEEEEECCCCcEEEee---cCCCc--cc
Confidence 4578888876543333332211 1122222335554444433221 268999999998887662 11211 11
Q ss_pred EEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceee-eecCEEEEEeccCCCCccCeEEE
Q 006334 132 TATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSN-VIANRLFVYGGDCGDQYHGDIDM 210 (650)
Q Consensus 132 s~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v-~~~~~Iyv~GG~~~~~~~n~v~~ 210 (650)
......+++.+++....+. ..++|.+|+.+.....+.. .+. ...... .-+++-++|..... -...+|+
T Consensus 250 ~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~Lt~---~~~--~~~~~~~spDG~~i~f~s~~~--g~~~Iy~ 318 (435)
T PRK05137 250 APRFSPDGRKVVMSLSQGG----NTDIYTMDLRSGTTTRLTD---SPA--IDTSPSYSPDGSQIVFESDRS--GSPQLYV 318 (435)
T ss_pred CcEECCCCCEEEEEEecCC----CceEEEEECCCCceEEccC---CCC--ccCceeEcCCCCEEEEEECCC--CCCeEEE
Confidence 2223335544333222111 2579999998887766542 111 111112 12344333332111 1257999
Q ss_pred EECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCcEEEeecCCCCCCCcceeEEEEE-
Q 006334 211 LDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVT- 289 (650)
Q Consensus 211 yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~~~~~~p~~R~~hsav~~- 289 (650)
+|..+.....+... ...........+++.+++...... ...++.+|+.+.....+.... ... ...+.
T Consensus 319 ~d~~g~~~~~lt~~----~~~~~~~~~SpdG~~ia~~~~~~~--~~~i~~~d~~~~~~~~lt~~~-----~~~-~p~~sp 386 (435)
T PRK05137 319 MNADGSNPRRISFG----GGRYSTPVWSPRGDLIAFTKQGGG--QFSIGVMKPDGSGERILTSGF-----LVE-GPTWAP 386 (435)
T ss_pred EECCCCCeEEeecC----CCcccCeEECCCCCEEEEEEcCCC--ceEEEEEECCCCceEeccCCC-----CCC-CCeECC
Confidence 99988877777521 112222223334444444322221 247999999877766654311 111 12222
Q ss_pred CCeEEEEcCCCCCCCCCCcEEEEecC
Q 006334 290 GSDIVIYGGCGEDERPLNELLVLQLG 315 (650)
Q Consensus 290 ~~~lyV~GG~~~~~~~~~d~~~l~l~ 315 (650)
+++.+++-...........++++++.
T Consensus 387 DG~~i~~~~~~~~~~~~~~L~~~dl~ 412 (435)
T PRK05137 387 NGRVIMFFRQTPGSGGAPKLYTVDLT 412 (435)
T ss_pred CCCEEEEEEccCCCCCcceEEEEECC
Confidence 55555553322111012467888775
|
|
| >PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function | Back alignment and domain information |
|---|
Probab=92.72 E-value=3.3 Score=44.76 Aligned_cols=118 Identities=14% Similarity=0.228 Sum_probs=69.0
Q ss_pred ECCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCc-----CeEEEE--
Q 006334 36 SHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKV-----NDLHIL-- 108 (650)
Q Consensus 36 ~~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~-----ndv~~y-- 108 (650)
.+++|+..+.. ..+.+||..+..-..++.+ +.+...-.++.++++||++......... ..++.+
T Consensus 75 ~gskIv~~d~~------~~t~vyDt~t~av~~~P~l---~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~ 145 (342)
T PF07893_consen 75 HGSKIVAVDQS------GRTLVYDTDTRAVATGPRL---HSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVY 145 (342)
T ss_pred cCCeEEEEcCC------CCeEEEECCCCeEeccCCC---CCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEecc
Confidence 48888888664 3489999999877766554 3334444666679999999877433221 144444
Q ss_pred EC------CCC--cEEeeecCCCCCCCCcc-------cEEEEEcCCEEEE-EccccCCCCcccceEEEEecCCCceeecc
Q 006334 109 DL------ESK--EWMRPECRGAPPSPRES-------HTATLVGDDKMVI-FGGSGEGEANYLNDLHVLDLKTMRWASPA 172 (650)
Q Consensus 109 D~------~t~--~W~~l~~~~~~P~~R~~-------hs~~~~~~~~Lyv-~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~ 172 (650)
+. ... .|..+ ..+|..+.. .+-+++.+..|+| +-|.. .-.|.||..+.+|+.+-
T Consensus 146 ~~~~~~~~~~~~w~W~~L---P~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-------~GTysfDt~~~~W~~~G 215 (342)
T PF07893_consen 146 RPPPDDPSPEESWSWRSL---PPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-------WGTYSFDTESHEWRKHG 215 (342)
T ss_pred ccccccccCCCcceEEcC---CCCCccccCCcccceEEEEEEecCCeEEEEecCCc-------eEEEEEEcCCcceeecc
Confidence 41 122 46665 233433322 1222232355555 32221 24899999999999753
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.64 E-value=4.2 Score=44.63 Aligned_cols=153 Identities=16% Similarity=0.204 Sum_probs=87.9
Q ss_pred CEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEECCCCcEEe
Q 006334 38 GAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMR 117 (650)
Q Consensus 38 ~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~ 117 (650)
.-+.+.+|.++.. .+|..|-..+. .+..+.-...|.........+....+++|. ..-+|.||+.+.+-++
T Consensus 225 ~plllvaG~d~~l---rifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r-----rky~ysyDle~ak~~k 294 (514)
T KOG2055|consen 225 APLLLVAGLDGTL---RIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGR-----RKYLYSYDLETAKVTK 294 (514)
T ss_pred CceEEEecCCCcE---EEEEecCccCh--hheeeeeccCccceeeecCCCceEEEeccc-----ceEEEEeecccccccc
Confidence 5788899986543 35555655554 222211111233322222223337777775 3458999999998888
Q ss_pred eecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeeecCEEEEEe
Q 006334 118 PECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYG 197 (650)
Q Consensus 118 l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~G 197 (650)
+......+ .+..+...+..++.++++-|.. .-++.+...++.|..-- .++.-....+....+..||+.|
T Consensus 295 ~~~~~g~e-~~~~e~FeVShd~~fia~~G~~-------G~I~lLhakT~eli~s~---KieG~v~~~~fsSdsk~l~~~~ 363 (514)
T KOG2055|consen 295 LKPPYGVE-EKSMERFEVSHDSNFIAIAGNN-------GHIHLLHAKTKELITSF---KIEGVVSDFTFSSDSKELLASG 363 (514)
T ss_pred ccCCCCcc-cchhheeEecCCCCeEEEcccC-------ceEEeehhhhhhhhhee---eeccEEeeEEEecCCcEEEEEc
Confidence 74333333 2334444444566777777762 24777777888886311 2222223333334456788888
Q ss_pred ccCCCCccCeEEEEECCCCc
Q 006334 198 GDCGDQYHGDIDMLDMNSLT 217 (650)
Q Consensus 198 G~~~~~~~n~v~~yd~~t~~ 217 (650)
|+ ..||++|+.++.
T Consensus 364 ~~------GeV~v~nl~~~~ 377 (514)
T KOG2055|consen 364 GT------GEVYVWNLRQNS 377 (514)
T ss_pred CC------ceEEEEecCCcc
Confidence 75 489999998874
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=92.62 E-value=18 Score=39.44 Aligned_cols=182 Identities=14% Similarity=0.131 Sum_probs=91.8
Q ss_pred ceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECC-EEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCccc
Q 006334 53 GDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGH-KMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESH 131 (650)
Q Consensus 53 ~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~-~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h 131 (650)
..++++|..++....+... +..... .....++ .|++....+ ...++|.+|+.+...+.+...... . .
T Consensus 214 ~~i~v~d~~~g~~~~~~~~---~~~~~~-~~~spDg~~l~~~~~~~---~~~~i~~~d~~~~~~~~l~~~~~~---~--~ 281 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASF---PGMNGA-PAFSPDGSKLAVSLSKD---GNPDIYVMDLDGKQLTRLTNGPGI---D--T 281 (417)
T ss_pred cEEEEEECCCCCEEEeecC---CCCccc-eEECCCCCEEEEEECCC---CCccEEEEECCCCCEEECCCCCCC---C--C
Confidence 5799999988876655433 111111 2222344 455443222 135799999998877766322111 1 1
Q ss_pred EEEEEcCCE-EEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeee-ecCEEEEEeccCCCCccCeEE
Q 006334 132 TATLVGDDK-MVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNV-IANRLFVYGGDCGDQYHGDID 209 (650)
Q Consensus 132 s~~~~~~~~-Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~-~~~~Iyv~GG~~~~~~~n~v~ 209 (650)
......+++ |++..... . ...+|++|+.+..+..+...+ ........ -+++.+++..... ....++
T Consensus 282 ~~~~s~dg~~l~~~s~~~---g--~~~iy~~d~~~~~~~~l~~~~-----~~~~~~~~spdg~~i~~~~~~~--~~~~i~ 349 (417)
T TIGR02800 282 EPSWSPDGKSIAFTSDRG---G--SPQIYMMDADGGEVRRLTFRG-----GYNASPSWSPDGDLIAFVHREG--GGFNIA 349 (417)
T ss_pred CEEECCCCCEEEEEECCC---C--CceEEEEECCCCCEEEeecCC-----CCccCeEECCCCCEEEEEEccC--CceEEE
Confidence 112223444 44433221 1 237999999888877654211 12222222 2455566555432 234799
Q ss_pred EEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCC
Q 006334 210 MLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVST 265 (650)
Q Consensus 210 ~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t 265 (650)
.+|+.+..+..+.... .........+++.+++.-..+.. ..+++++...
T Consensus 350 ~~d~~~~~~~~l~~~~-----~~~~p~~spdg~~l~~~~~~~~~--~~l~~~~~~g 398 (417)
T TIGR02800 350 VMDLDGGGERVLTDTG-----LDESPSFAPNGRMILYATTRGGR--GVLGLVSTDG 398 (417)
T ss_pred EEeCCCCCeEEccCCC-----CCCCceECCCCCEEEEEEeCCCc--EEEEEEECCC
Confidence 9999987776665211 11122333355444443332222 3566666544
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=92.48 E-value=11 Score=38.05 Aligned_cols=179 Identities=15% Similarity=0.139 Sum_probs=95.0
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCC--CCCCCCcceEEEEECCEEEEEcccCCC-cCc--CeEEEEECC
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTG--QGPGPRDSHSAILWGHKMIVFGGTNGY-KKV--NDLHILDLE 111 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g--~~P~pR~~hsa~~~~~~lyVfGG~~~~-~~~--ndv~~yD~~ 111 (650)
++.+|+... ..+.++|+.+++++.+.... ..+..+..-.++.-+|+||+---.... ... ..+|++++.
T Consensus 51 ~g~l~v~~~-------~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~ 123 (246)
T PF08450_consen 51 DGRLYVADS-------GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD 123 (246)
T ss_dssp TSEEEEEET-------TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT
T ss_pred CCEEEEEEc-------CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC
Confidence 577877654 24577799999998876541 113334444444457888774322111 112 579999999
Q ss_pred CCcEEeeecCCCCCCCCcccEEEEEcCC-EEEEEccccCCCCcccceEEEEecCCCc--eeeccccCCCCCCC--Cccee
Q 006334 112 SKEWMRPECRGAPPSPRESHTATLVGDD-KMVIFGGSGEGEANYLNDLHVLDLKTMR--WASPAVKGDIPVPR--DSHSS 186 (650)
Q Consensus 112 t~~W~~l~~~~~~P~~R~~hs~~~~~~~-~Lyv~GG~~~~~~~~~~dv~~yd~~t~~--Wt~i~~~~~lP~~R--~~hs~ 186 (650)
.+...+... -..-..+++..++ .||+.-- ..+.+++|+++... +........++... ....+
T Consensus 124 -~~~~~~~~~-----~~~pNGi~~s~dg~~lyv~ds-------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~ 190 (246)
T PF08450_consen 124 -GKVTVVADG-----LGFPNGIAFSPDGKTLYVADS-------FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLA 190 (246)
T ss_dssp -SEEEEEEEE-----ESSEEEEEEETTSSEEEEEET-------TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEE
T ss_pred -CeEEEEecC-----cccccceEECCcchheeeccc-------ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcce
Confidence 665554211 1223456666665 4666321 23569999986433 43322111222221 12222
Q ss_pred eeecCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEEC----CEEEEE
Q 006334 187 NVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIG----TKVYII 246 (650)
Q Consensus 187 v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~----~~IyI~ 246 (650)
+--++.||+..-. .+.+++||++......+. .|.. ..+.+.++ ++|||.
T Consensus 191 vD~~G~l~va~~~-----~~~I~~~~p~G~~~~~i~----~p~~--~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 191 VDSDGNLWVADWG-----GGRIVVFDPDGKLLREIE----LPVP--RPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EBTTS-EEEEEET-----TTEEEEEETTSCEEEEEE-----SSS--SEEEEEEESTTSSEEEEE
T ss_pred EcCCCCEEEEEcC-----CCEEEEECCCccEEEEEc----CCCC--CEEEEEEECCCCCEEEEE
Confidence 3335789987321 258999999966666665 3322 34444442 467775
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=92.41 E-value=21 Score=39.65 Aligned_cols=190 Identities=13% Similarity=0.098 Sum_probs=95.0
Q ss_pred cceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCccc
Q 006334 52 FGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESH 131 (650)
Q Consensus 52 ~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h 131 (650)
...+|+.|.....=..+...+. ........-+++.++|..+.. ....+|++|+.+++.+.+. ..+.. ..
T Consensus 183 ~~~l~i~D~~g~~~~~lt~~~~----~v~~p~wSpDg~~la~~s~~~--~~~~l~~~dl~~g~~~~l~---~~~g~--~~ 251 (433)
T PRK04922 183 RYALQVADSDGYNPQTILRSAE----PILSPAWSPDGKKLAYVSFER--GRSAIYVQDLATGQRELVA---SFRGI--NG 251 (433)
T ss_pred eEEEEEECCCCCCceEeecCCC----ccccccCCCCCCEEEEEecCC--CCcEEEEEECCCCCEEEec---cCCCC--cc
Confidence 3468888876443223322211 111112223554444443322 2467999999988876652 11211 11
Q ss_pred EEEEEcCCE-EEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee-cCE-EEEEeccCCCCccCeE
Q 006334 132 TATLVGDDK-MVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI-ANR-LFVYGGDCGDQYHGDI 208 (650)
Q Consensus 132 s~~~~~~~~-Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~-~~~-Iyv~GG~~~~~~~n~v 208 (650)
+.....+++ |++.... ++ ..+++++|+.+.....+... . . ........ +++ |++.....+ ...+
T Consensus 252 ~~~~SpDG~~l~~~~s~-~g----~~~Iy~~d~~~g~~~~lt~~---~-~-~~~~~~~spDG~~l~f~sd~~g---~~~i 318 (433)
T PRK04922 252 APSFSPDGRRLALTLSR-DG----NPEIYVMDLGSRQLTRLTNH---F-G-IDTEPTWAPDGKSIYFTSDRGG---RPQI 318 (433)
T ss_pred CceECCCCCEEEEEEeC-CC----CceEEEEECCCCCeEECccC---C-C-CccceEECCCCCEEEEEECCCC---CceE
Confidence 223333554 4443222 11 24799999988876655411 1 0 11112222 344 444332221 2479
Q ss_pred EEEECCCCcEEEeeecCCCCCcccce-EEEEECC-EEEEEeccCCCcccCeEEEEECCCCcEEEeec
Q 006334 209 DMLDMNSLTWSRLAIIGSSPGVRAGH-AAINIGT-KVYIIGGVGDKHYYNDIWILNVSTCSWSQLDT 273 (650)
Q Consensus 209 ~~yd~~t~~W~~i~~~g~~P~~R~~~-s~v~~~~-~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~~ 273 (650)
|.+|+.+.++..+...+ .... .....++ .|++..+ .+. ...++.+|+.++.+..+..
T Consensus 319 y~~dl~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~~~-~~~--~~~I~v~d~~~g~~~~Lt~ 377 (433)
T PRK04922 319 YRVAASGGSAERLTFQG-----NYNARASVSPDGKKIAMVHG-SGG--QYRIAVMDLSTGSVRTLTP 377 (433)
T ss_pred EEEECCCCCeEEeecCC-----CCccCEEECCCCCEEEEEEC-CCC--ceeEEEEECCCCCeEECCC
Confidence 99999888888776322 1111 2223344 5555433 221 2379999999998887753
|
|
| >PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] | Back alignment and domain information |
|---|
Probab=92.09 E-value=12 Score=38.74 Aligned_cols=186 Identities=13% Similarity=0.162 Sum_probs=102.7
Q ss_pred CCEEEEEccCCCCcccceEEEEE----C-CCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEECC
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLN----L-DTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLE 111 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD----~-~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~ 111 (650)
.++||++.|..+. .++.|. + ..+.+...-.. |.+-.+.+.++++|.+|..-. ..+.+.+||+.
T Consensus 30 ~~~iy~~~~~~~~----~v~ey~~~~~f~~~~~~~~~~~L---p~~~~GtG~vVYngslYY~~~-----~s~~IvkydL~ 97 (250)
T PF02191_consen 30 SEKIYVTSGFSGN----TVYEYRNYEDFLRNGRSSRTYKL---PYPWQGTGHVVYNGSLYYNKY-----NSRNIVKYDLT 97 (250)
T ss_pred CCCEEEECccCCC----EEEEEcCHhHHhhcCCCceEEEE---eceeccCCeEEECCcEEEEec-----CCceEEEEECc
Confidence 4789999886543 566553 2 22233332222 556677777888888876432 46899999999
Q ss_pred CCcEE---eeecCCCC---CCCCcc---cEEEEEcCCEEEEEccccCCCCcccceEEEEecCC----CceeeccccCCCC
Q 006334 112 SKEWM---RPECRGAP---PSPRES---HTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKT----MRWASPAVKGDIP 178 (650)
Q Consensus 112 t~~W~---~l~~~~~~---P~~R~~---hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t----~~Wt~i~~~~~lP 178 (650)
++.-. .++..+.. +-.... .-.+ +.++-|+++=...+.+.. --+-.+|+.+ .+|.. ..+
T Consensus 98 t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~A-vDE~GLWvIYat~~~~g~--ivvskld~~tL~v~~tw~T-----~~~ 169 (250)
T PF02191_consen 98 TRSVVARRELPGAGYNNRFPYYWSGYTDIDFA-VDENGLWVIYATEDNNGN--IVVSKLDPETLSVEQTWNT-----SYP 169 (250)
T ss_pred CCcEEEEEECCccccccccceecCCCceEEEE-EcCCCEEEEEecCCCCCc--EEEEeeCcccCceEEEEEe-----ccC
Confidence 98644 33211111 111111 1222 235778877555332211 1234455543 46763 344
Q ss_pred CCCCcceeeeecCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEEC---CEEEEE
Q 006334 179 VPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIG---TKVYII 246 (650)
Q Consensus 179 ~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~---~~IyI~ 246 (650)
....+.+.++ -+.||++-..+... ..-.+.||+.+++=..+.. +.+.+-..++++.++ .+||++
T Consensus 170 k~~~~naFmv-CGvLY~~~s~~~~~-~~I~yafDt~t~~~~~~~i--~f~~~~~~~~~l~YNP~dk~LY~w 236 (250)
T PF02191_consen 170 KRSAGNAFMV-CGVLYATDSYDTRD-TEIFYAFDTYTGKEEDVSI--PFPNPYGNISMLSYNPRDKKLYAW 236 (250)
T ss_pred chhhcceeeE-eeEEEEEEECCCCC-cEEEEEEECCCCceeceee--eeccccCceEeeeECCCCCeEEEE
Confidence 4444444443 45788886654332 3446889999887665542 334444456666654 478888
|
Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding |
| >PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=91.70 E-value=5.8 Score=41.55 Aligned_cols=150 Identities=16% Similarity=0.185 Sum_probs=85.9
Q ss_pred eEEEEECCEEEEEcccC-------C--C--------cCcCeEEEEECCCCc----EEeeecCCCCCCCCcccEEEEEc--
Q 006334 81 HSAILWGHKMIVFGGTN-------G--Y--------KKVNDLHILDLESKE----WMRPECRGAPPSPRESHTATLVG-- 137 (650)
Q Consensus 81 hsa~~~~~~lyVfGG~~-------~--~--------~~~ndv~~yD~~t~~----W~~l~~~~~~P~~R~~hs~~~~~-- 137 (650)
.++..+++.|| |||+- + . ..++.+..||.++++ |+. +...+...++-.+-+++
T Consensus 40 NAV~~vDd~Iy-FGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWke---sih~~~~WaGEVSdIlYdP 115 (339)
T PF09910_consen 40 NAVEWVDDFIY-FGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKE---SIHDKTKWAGEVSDILYDP 115 (339)
T ss_pred eeeeeecceEE-EeeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEec---ccCCccccccchhheeeCC
Confidence 34555677776 68862 1 1 236889999998886 654 23334444444444443
Q ss_pred -CCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeeecCEEEEEeccCCCCccCeEEEEECCCC
Q 006334 138 -DDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSL 216 (650)
Q Consensus 138 -~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~ 216 (650)
++.||+.=+ ++ -..--+|.+|.++..-+.+. .-|.. -.+.+++..+|-+ ..-..-.+.+.+||+.++
T Consensus 116 ~~D~LLlAR~--DG--h~nLGvy~ldr~~g~~~~L~---~~ps~---KG~~~~D~a~F~i--~~~~~g~~~i~~~Dli~~ 183 (339)
T PF09910_consen 116 YEDRLLLARA--DG--HANLGVYSLDRRTGKAEKLS---SNPSL---KGTLVHDYACFGI--NNFHKGVSGIHCLDLISG 183 (339)
T ss_pred CcCEEEEEec--CC--cceeeeEEEcccCCceeecc---CCCCc---CceEeeeeEEEec--cccccCCceEEEEEccCC
Confidence 477877533 21 12235888898888877766 22222 2233444444433 333345678999999999
Q ss_pred cE--EEeeec----CCCCCcccceEEEEECCEEEEE
Q 006334 217 TW--SRLAII----GSSPGVRAGHAAINIGTKVYII 246 (650)
Q Consensus 217 ~W--~~i~~~----g~~P~~R~~~s~v~~~~~IyI~ 246 (650)
+| +..+.. +.....|....++.+.+++|.|
T Consensus 184 ~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF 219 (339)
T PF09910_consen 184 KWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAF 219 (339)
T ss_pred eEEEEecccccCCCCCceEeeccccEEEEeeeEEEE
Confidence 99 443321 1112234455567777776665
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=91.63 E-value=26 Score=38.97 Aligned_cols=185 Identities=11% Similarity=0.084 Sum_probs=96.0
Q ss_pred cceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECC-EEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcc
Q 006334 52 FGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGH-KMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRES 130 (650)
Q Consensus 52 ~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~-~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~ 130 (650)
...+|++|+.+++...+... +. .........++ +|++....++ ..++|.+|+.+++.+.+... .. ..
T Consensus 227 ~~~l~~~dl~~g~~~~l~~~---~g-~~~~~~~SpDG~~l~~~~s~~g---~~~Iy~~d~~~g~~~~lt~~---~~--~~ 294 (433)
T PRK04922 227 RSAIYVQDLATGQRELVASF---RG-INGAPSFSPDGRRLALTLSRDG---NPEIYVMDLGSRQLTRLTNH---FG--ID 294 (433)
T ss_pred CcEEEEEECCCCCEEEeccC---CC-CccCceECCCCCEEEEEEeCCC---CceEEEEECCCCCeEECccC---CC--Cc
Confidence 35799999988877666433 11 11122222344 4544332222 25899999999887665211 11 11
Q ss_pred cEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee--cCEEEEEeccCCCCccCeE
Q 006334 131 HTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI--ANRLFVYGGDCGDQYHGDI 208 (650)
Q Consensus 131 hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~--~~~Iyv~GG~~~~~~~n~v 208 (650)
.......+++.+++..... . ..++|.+|+.+.++..+...+ .+....... ++.|++..+. +. ...+
T Consensus 295 ~~~~~spDG~~l~f~sd~~--g--~~~iy~~dl~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~~~~-~~--~~~I 362 (433)
T PRK04922 295 TEPTWAPDGKSIYFTSDRG--G--RPQIYRVAASGGSAERLTFQG-----NYNARASVSPDGKKIAMVHGS-GG--QYRI 362 (433)
T ss_pred cceEECCCCCEEEEEECCC--C--CceEEEEECCCCCeEEeecCC-----CCccCEEECCCCCEEEEEECC-CC--ceeE
Confidence 1223334555444432211 1 247999999888887665221 222222222 3455554442 21 2378
Q ss_pred EEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCc
Q 006334 209 DMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCS 267 (650)
Q Consensus 209 ~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~ 267 (650)
+.+|+.+..+..+... . .........+++.+++..... ....+|.+++....
T Consensus 363 ~v~d~~~g~~~~Lt~~---~--~~~~p~~spdG~~i~~~s~~~--g~~~L~~~~~~g~~ 414 (433)
T PRK04922 363 AVMDLSTGSVRTLTPG---S--LDESPSFAPNGSMVLYATREG--GRGVLAAVSTDGRV 414 (433)
T ss_pred EEEECCCCCeEECCCC---C--CCCCceECCCCCEEEEEEecC--CceEEEEEECCCCc
Confidence 9999988888766521 1 111123344555555543332 23568888886543
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=91.37 E-value=8.9 Score=42.10 Aligned_cols=210 Identities=10% Similarity=0.060 Sum_probs=103.2
Q ss_pred EEEEEccCCCCcc------cceEEEEECCCCcEEEeecCCCCCCCCc-ceEEEE-ECCEEEEEcccCCCcCcCeEEEEEC
Q 006334 39 AVYIFGGCCGGLH------FGDVLMLNLDTMVWSTLATTGQGPGPRD-SHSAIL-WGHKMIVFGGTNGYKKVNDLHILDL 110 (650)
Q Consensus 39 ~IyvfGG~~~~~~------~~dv~~yD~~t~sW~~l~~~g~~P~pR~-~hsa~~-~~~~lyVfGG~~~~~~~ndv~~yD~ 110 (650)
..+++........ ...+|++...+..-........ +.... ...+.. .+++.+++.-..+.. .+++|.+|.
T Consensus 182 ~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~-~~~~~~~~~~~~s~d~~~l~i~~~~~~~-~s~v~~~d~ 259 (414)
T PF02897_consen 182 KGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEE-PDEPFWFVSVSRSKDGRYLFISSSSGTS-ESEVYLLDL 259 (414)
T ss_dssp SEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC--TTCTTSEEEEEE-TTSSEEEEEEESSSS-EEEEEEEEC
T ss_pred CEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEee-cCCCcEEEEEEecCcccEEEEEEEcccc-CCeEEEEec
Confidence 4555555444322 6678888887765431111111 12222 323332 344433333332222 589999999
Q ss_pred CCC-----cEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCc---eee-ccccCCCCCCC
Q 006334 111 ESK-----EWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMR---WAS-PAVKGDIPVPR 181 (650)
Q Consensus 111 ~t~-----~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~---Wt~-i~~~~~lP~~R 181 (650)
... .|..+.. ...-....+... ++.+|+.-..+ .....+..+++.+.. |.. +. +-....
T Consensus 260 ~~~~~~~~~~~~l~~----~~~~~~~~v~~~-~~~~yi~Tn~~----a~~~~l~~~~l~~~~~~~~~~~l~---~~~~~~ 327 (414)
T PF02897_consen 260 DDGGSPDAKPKLLSP----REDGVEYYVDHH-GDRLYILTNDD----APNGRLVAVDLADPSPAEWWTVLI---PEDEDV 327 (414)
T ss_dssp CCTTTSS-SEEEEEE----SSSS-EEEEEEE-TTEEEEEE-TT-----TT-EEEEEETTSTSGGGEEEEEE-----SSSE
T ss_pred cccCCCcCCcEEEeC----CCCceEEEEEcc-CCEEEEeeCCC----CCCcEEEEecccccccccceeEEc---CCCCce
Confidence 875 7888722 111112222223 68888876532 234568888887654 663 22 111111
Q ss_pred CcceeeeecCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEE---CCEE-EEEeccCCCcccCe
Q 006334 182 DSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINI---GTKV-YIIGGVGDKHYYND 257 (650)
Q Consensus 182 ~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~---~~~I-yI~GG~~~~~~~~d 257 (650)
.--.+...++.|++.-=. .....+.+||+. ..|..... ++|.. ........ .+.+ |.+.+. .....
T Consensus 328 ~l~~~~~~~~~Lvl~~~~---~~~~~l~v~~~~-~~~~~~~~--~~p~~-g~v~~~~~~~~~~~~~~~~ss~---~~P~~ 397 (414)
T PF02897_consen 328 SLEDVSLFKDYLVLSYRE---NGSSRLRVYDLD-DGKESREI--PLPEA-GSVSGVSGDFDSDELRFSYSSF---TTPPT 397 (414)
T ss_dssp EEEEEEEETTEEEEEEEE---TTEEEEEEEETT--TEEEEEE--ESSSS-SEEEEEES-TT-SEEEEEEEET---TEEEE
T ss_pred eEEEEEEECCEEEEEEEE---CCccEEEEEECC-CCcEEeee--cCCcc-eEEeccCCCCCCCEEEEEEeCC---CCCCE
Confidence 122333456777776432 234688999988 23333332 12221 11112221 2344 444443 33458
Q ss_pred EEEEECCCCcEEEee
Q 006334 258 IWILNVSTCSWSQLD 272 (650)
Q Consensus 258 v~~yD~~t~~W~~l~ 272 (650)
+|.||+.+++.+.+.
T Consensus 398 ~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 398 VYRYDLATGELTLLK 412 (414)
T ss_dssp EEEEETTTTCEEEEE
T ss_pred EEEEECCCCCEEEEE
Confidence 999999999988775
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=90.93 E-value=30 Score=38.47 Aligned_cols=239 Identities=12% Similarity=0.071 Sum_probs=115.7
Q ss_pred EEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEECCCCcEEee
Q 006334 39 AVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRP 118 (650)
Q Consensus 39 ~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l 118 (650)
-+|+.-..+ ..+..++|+.|.....=..+.... .........-+++.++|-.... ....+|.+|+.+.+-+.+
T Consensus 166 iayv~~~~~-~~~~~~l~~~d~dg~~~~~lt~~~----~~~~~p~wSPDG~~la~~s~~~--g~~~i~i~dl~~G~~~~l 238 (429)
T PRK03629 166 IAYVVQTNG-GQFPYELRVSDYDGYNQFVVHRSP----QPLMSPAWSPDGSKLAYVTFES--GRSALVIQTLANGAVRQV 238 (429)
T ss_pred EEEEEeeCC-CCcceeEEEEcCCCCCCEEeecCC----CceeeeEEcCCCCEEEEEEecC--CCcEEEEEECCCCCeEEc
Confidence 345543222 234568999987654333332221 1122223333555444432211 135799999988876665
Q ss_pred ecCCCCCCCCcccEEEEEcCCE-EEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee-cCEEEEE
Q 006334 119 ECRGAPPSPRESHTATLVGDDK-MVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI-ANRLFVY 196 (650)
Q Consensus 119 ~~~~~~P~~R~~hs~~~~~~~~-Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~-~~~Iyv~ 196 (650)
. ..+ ..........+++ |++.... .. ..++|++|+++.....+.. ... ........ +++.++|
T Consensus 239 ~---~~~--~~~~~~~~SPDG~~La~~~~~-~g----~~~I~~~d~~tg~~~~lt~---~~~--~~~~~~wSPDG~~I~f 303 (429)
T PRK03629 239 A---SFP--RHNGAPAFSPDGSKLAFALSK-TG----SLNLYVMDLASGQIRQVTD---GRS--NNTEPTWFPDSQNLAY 303 (429)
T ss_pred c---CCC--CCcCCeEECCCCCEEEEEEcC-CC----CcEEEEEECCCCCEEEccC---CCC--CcCceEECCCCCEEEE
Confidence 2 111 1112233344554 4443222 11 2369999999887776541 111 11122222 3443444
Q ss_pred eccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCcEEEeecCCC
Q 006334 197 GGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLDTCGQ 276 (650)
Q Consensus 197 GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~~~~~ 276 (650)
...... ...+|.+|+.+.....+...+ ..........+++.+++.+..+. ..+++.+|++++.+..+....
T Consensus 304 ~s~~~g--~~~Iy~~d~~~g~~~~lt~~~----~~~~~~~~SpDG~~Ia~~~~~~g--~~~I~~~dl~~g~~~~Lt~~~- 374 (429)
T PRK03629 304 TSDQAG--RPQVYKVNINGGAPQRITWEG----SQNQDADVSSDGKFMVMVSSNGG--QQHIAKQDLATGGVQVLTDTF- 374 (429)
T ss_pred EeCCCC--CceEEEEECCCCCeEEeecCC----CCccCEEECCCCCEEEEEEccCC--CceEEEEECCCCCeEEeCCCC-
Confidence 332211 247999999888777665211 11122223344544444333222 347999999999988876321
Q ss_pred CCCCcceeEEEEECCeEEEEcCCCCCCCCCCcEEEEecC
Q 006334 277 QPQGRFSHAAVVTGSDIVIYGGCGEDERPLNELLVLQLG 315 (650)
Q Consensus 277 ~p~~R~~hsav~~~~~lyV~GG~~~~~~~~~d~~~l~l~ 315 (650)
....-...-+++.+++.+.... ...+++.+++
T Consensus 375 ----~~~~p~~SpDG~~i~~~s~~~~---~~~l~~~~~~ 406 (429)
T PRK03629 375 ----LDETPSIAPNGTMVIYSSSQGM---GSVLNLVSTD 406 (429)
T ss_pred ----CCCCceECCCCCEEEEEEcCCC---ceEEEEEECC
Confidence 0011112235666666554211 2345555553
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=90.75 E-value=30 Score=38.22 Aligned_cols=245 Identities=11% Similarity=0.098 Sum_probs=118.8
Q ss_pred cCCCeEEeeecCCCCCCCc--ceeEEEEECCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-
Q 006334 10 KRAAMWLYPKVLGFNPPER--WGHSACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW- 86 (650)
Q Consensus 10 ~~~~~W~~~~~~g~~P~~R--~ghs~v~~~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~- 86 (650)
..-..|.+....+.....+ .-.++.+.++.+|+.|-. .-++.-+-.-.+|+.+......|.. .+.+...
T Consensus 117 DGG~tW~~~~~~~~~~~~~~~~l~~v~f~~~~g~~vG~~------G~il~T~DgG~tW~~~~~~~~~p~~--~~~i~~~~ 188 (398)
T PLN00033 117 DGGKTWVPRSIPSAEDEDFNYRFNSISFKGKEGWIIGKP------AILLHTSDGGETWERIPLSPKLPGE--PVLIKATG 188 (398)
T ss_pred CCCCCceECccCcccccccccceeeeEEECCEEEEEcCc------eEEEEEcCCCCCceECccccCCCCC--ceEEEEEC
Confidence 3446788644322111122 123455667788888643 2344445556889988654222322 2233334
Q ss_pred CCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCC-CCCCC--------------CcccEEEEEcCCEEEEEccccCCC
Q 006334 87 GHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRG-APPSP--------------RESHTATLVGDDKMVIFGGSGEGE 151 (650)
Q Consensus 87 ~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~-~~P~~--------------R~~hs~~~~~~~~Lyv~GG~~~~~ 151 (650)
++.+++.|.. ..+++-+-.-.+|+.+.... ..+.. -....+....++.++++|-.+
T Consensus 189 ~~~~~ivg~~------G~v~~S~D~G~tW~~~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~vg~~G--- 259 (398)
T PLN00033 189 PKSAEMVTDE------GAIYVTSNAGRNWKAAVEETVSATLNRTVSSGISGASYYTGTFSTVNRSPDGDYVAVSSRG--- 259 (398)
T ss_pred CCceEEEecc------ceEEEECCCCCCceEcccccccccccccccccccccceeccceeeEEEcCCCCEEEEECCc---
Confidence 4567777742 23555554556898751110 00110 111222333455666665442
Q ss_pred CcccceEEEEecCCC-ceeeccccCCCCCCCCcceee-eecCEEEEEeccCCCCccCeEEEEECCCCcE-----EEeeec
Q 006334 152 ANYLNDLHVLDLKTM-RWASPAVKGDIPVPRDSHSSN-VIANRLFVYGGDCGDQYHGDIDMLDMNSLTW-----SRLAII 224 (650)
Q Consensus 152 ~~~~~dv~~yd~~t~-~Wt~i~~~~~lP~~R~~hs~v-~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W-----~~i~~~ 224 (650)
.+++-+-.-. .|+.+. .+..+...++. ..++.++++|.. ..++.-+.....| .++.
T Consensus 260 -----~~~~s~d~G~~~W~~~~----~~~~~~l~~v~~~~dg~l~l~g~~------G~l~~S~d~G~~~~~~~f~~~~-- 322 (398)
T PLN00033 260 -----NFYLTWEPGQPYWQPHN----RASARRIQNMGWRADGGLWLLTRG------GGLYVSKGTGLTEEDFDFEEAD-- 322 (398)
T ss_pred -----cEEEecCCCCcceEEec----CCCccceeeeeEcCCCCEEEEeCC------ceEEEecCCCCcccccceeecc--
Confidence 2443332223 388765 33333333333 335778887642 2344444344434 4443
Q ss_pred CCCCCcccceE-EEEE-CCEEEEEeccCCCcccCeEEEEECCCCcEEEeecCCCCCCCcceeEEEEE-CCeEEEEcC
Q 006334 225 GSSPGVRAGHA-AINI-GTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVT-GSDIVIYGG 298 (650)
Q Consensus 225 g~~P~~R~~~s-~v~~-~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~~~~~~p~~R~~hsav~~-~~~lyV~GG 298 (650)
.+..++... +... ++.++++|... -+++-...-++|+........+...+ .+... +++.|+.|-
T Consensus 323 --~~~~~~~l~~v~~~~d~~~~a~G~~G------~v~~s~D~G~tW~~~~~~~~~~~~ly--~v~f~~~~~g~~~G~ 389 (398)
T PLN00033 323 --IKSRGFGILDVGYRSKKEAWAAGGSG------ILLRSTDGGKSWKRDKGADNIAANLY--SVKFFDDKKGFVLGN 389 (398)
T ss_pred --cCCCCcceEEEEEcCCCcEEEEECCC------cEEEeCCCCcceeEccccCCCCccee--EEEEcCCCceEEEeC
Confidence 222233232 3333 45888887642 35555556678999764222222222 44433 478888874
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=90.64 E-value=25 Score=37.12 Aligned_cols=236 Identities=11% Similarity=0.051 Sum_probs=105.1
Q ss_pred EEEEEccCCCCcccceEEEEECCC-CcEEEeecCCCCCCCCcceEEEEE-CC-EEEEEcccCCCcCcCeEEEEECC-CCc
Q 006334 39 AVYIFGGCCGGLHFGDVLMLNLDT-MVWSTLATTGQGPGPRDSHSAILW-GH-KMIVFGGTNGYKKVNDLHILDLE-SKE 114 (650)
Q Consensus 39 ~IyvfGG~~~~~~~~dv~~yD~~t-~sW~~l~~~g~~P~pR~~hsa~~~-~~-~lyVfGG~~~~~~~ndv~~yD~~-t~~ 114 (650)
++|+..+. .+.+..||..+ .+++.+.... ..-..+.+++. ++ .||+. +.. .+.+..|++. +.+
T Consensus 3 ~~y~~~~~-----~~~I~~~~~~~~g~l~~~~~~~---~~~~~~~l~~spd~~~lyv~-~~~----~~~i~~~~~~~~g~ 69 (330)
T PRK11028 3 IVYIASPE-----SQQIHVWNLNHEGALTLLQVVD---VPGQVQPMVISPDKRHLYVG-VRP----EFRVLSYRIADDGA 69 (330)
T ss_pred EEEEEcCC-----CCCEEEEEECCCCceeeeeEEe---cCCCCccEEECCCCCEEEEE-ECC----CCcEEEEEECCCCc
Confidence 46665443 24677888753 5676655431 11122233332 44 46664 332 2557677775 445
Q ss_pred EEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCc-e-eeccccCCCCCCCCcceeeee-c-
Q 006334 115 WMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMR-W-ASPAVKGDIPVPRDSHSSNVI-A- 190 (650)
Q Consensus 115 W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~-W-t~i~~~~~lP~~R~~hs~v~~-~- 190 (650)
++.+... +.+..-+.++...+++.++...+. .+.+.+||++++. . ..+. .++.....|.++.. +
T Consensus 70 l~~~~~~---~~~~~p~~i~~~~~g~~l~v~~~~------~~~v~v~~~~~~g~~~~~~~---~~~~~~~~~~~~~~p~g 137 (330)
T PRK11028 70 LTFAAES---PLPGSPTHISTDHQGRFLFSASYN------ANCVSVSPLDKDGIPVAPIQ---IIEGLEGCHSANIDPDN 137 (330)
T ss_pred eEEeeee---cCCCCceEEEECCCCCEEEEEEcC------CCeEEEEEECCCCCCCCcee---eccCCCcccEeEeCCCC
Confidence 6554321 111111233333455544444432 2457778775431 1 1111 12222233554443 3
Q ss_pred CEEEEEeccCCCCccCeEEEEECCCC-cEEEeee-cCCCCCcccceEEEEEC--CEEEEEeccCCCcccCeEEEEECC--
Q 006334 191 NRLFVYGGDCGDQYHGDIDMLDMNSL-TWSRLAI-IGSSPGVRAGHAAINIG--TKVYIIGGVGDKHYYNDIWILNVS-- 264 (650)
Q Consensus 191 ~~Iyv~GG~~~~~~~n~v~~yd~~t~-~W~~i~~-~g~~P~~R~~~s~v~~~--~~IyI~GG~~~~~~~~dv~~yD~~-- 264 (650)
+.+|+..- ..+.+.+||+.+. ....... ....+....-+.++... ..+|+.- ...+.+.+||+.
T Consensus 138 ~~l~v~~~-----~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~-----~~~~~v~v~~~~~~ 207 (330)
T PRK11028 138 RTLWVPCL-----KEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVN-----ELNSSVDVWQLKDP 207 (330)
T ss_pred CEEEEeeC-----CCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEe-----cCCCEEEEEEEeCC
Confidence 35665432 2257899998763 2221100 00011111111233333 3677762 224678888876
Q ss_pred CCcEEEeecCCCC----CCCcceeEEEEE-CC-eEEEEcCCCCCCCCCCcEEEEecC
Q 006334 265 TCSWSQLDTCGQQ----PQGRFSHAAVVT-GS-DIVIYGGCGEDERPLNELLVLQLG 315 (650)
Q Consensus 265 t~~W~~l~~~~~~----p~~R~~hsav~~-~~-~lyV~GG~~~~~~~~~d~~~l~l~ 315 (650)
+++++.+...... +.+|+...+.+. ++ .+|+... ..+.+.+++++
T Consensus 208 ~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~------~~~~I~v~~i~ 258 (330)
T PRK11028 208 HGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDR------TASLISVFSVS 258 (330)
T ss_pred CCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecC------CCCeEEEEEEe
Confidence 4565554332112 223433333333 33 4666521 13456666664
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=90.60 E-value=37 Score=38.98 Aligned_cols=214 Identities=16% Similarity=0.173 Sum_probs=107.8
Q ss_pred EEEEECCEEEEEccCCCCcccceEEEEECCCC--cEEEeecCCC--CC---CCCcceEEEEECCEEEEEcccCCCcCcCe
Q 006334 32 SACYSHGAVYIFGGCCGGLHFGDVLMLNLDTM--VWSTLATTGQ--GP---GPRDSHSAILWGHKMIVFGGTNGYKKVND 104 (650)
Q Consensus 32 s~v~~~~~IyvfGG~~~~~~~~dv~~yD~~t~--sW~~l~~~g~--~P---~pR~~hsa~~~~~~lyVfGG~~~~~~~nd 104 (650)
+.++.++.||+.... +.++.+|..+. .|+.-..... .+ ........++.+++||+... ...
T Consensus 64 tPvv~~g~vyv~s~~------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~------dg~ 131 (527)
T TIGR03075 64 QPLVVDGVMYVTTSY------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL------DAR 131 (527)
T ss_pred CCEEECCEEEEECCC------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC------CCE
Confidence 445678999985542 35889998765 4875432210 00 01122334667888886322 246
Q ss_pred EEEEECCCCc--EEeeecCCCCCCC-CcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCC--ceeeccccCCC--
Q 006334 105 LHILDLESKE--WMRPECRGAPPSP-RESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTM--RWASPAVKGDI-- 177 (650)
Q Consensus 105 v~~yD~~t~~--W~~l~~~~~~P~~-R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~--~Wt~i~~~~~l-- 177 (650)
++.+|.++.+ |+.-. ...... ....+-++. ++.||+-....+ ......++.||.++. .|+.-......
T Consensus 132 l~ALDa~TGk~~W~~~~--~~~~~~~~~tssP~v~-~g~Vivg~~~~~--~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~ 206 (527)
T TIGR03075 132 LVALDAKTGKVVWSKKN--GDYKAGYTITAAPLVV-KGKVITGISGGE--FGVRGYVTAYDAKTGKLVWRRYTVPGDMGY 206 (527)
T ss_pred EEEEECCCCCEEeeccc--ccccccccccCCcEEE-CCEEEEeecccc--cCCCcEEEEEECCCCceeEeccCcCCCccc
Confidence 9999998875 86531 111111 111222333 577666322111 123457888998876 47643211110
Q ss_pred -----------------CCCCCcce------eeeec---CEEEEEecc----CC------CCccCeEEEEECCCCc--EE
Q 006334 178 -----------------PVPRDSHS------SNVIA---NRLFVYGGD----CG------DQYHGDIDMLDMNSLT--WS 219 (650)
Q Consensus 178 -----------------P~~R~~hs------~v~~~---~~Iyv~GG~----~~------~~~~n~v~~yd~~t~~--W~ 219 (650)
+.....+. ...++ +.||+--|. .. +.+.+++..+|+++.+ |.
T Consensus 207 ~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~ 286 (527)
T TIGR03075 207 LDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWH 286 (527)
T ss_pred ccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEe
Confidence 00011110 11222 567776663 11 2457789999998775 77
Q ss_pred EeeecCCCCC--cccceEEEE--ECC---EEEEEeccCCCcccCeEEEEECCCCc
Q 006334 220 RLAIIGSSPG--VRAGHAAIN--IGT---KVYIIGGVGDKHYYNDIWILNVSTCS 267 (650)
Q Consensus 220 ~i~~~g~~P~--~R~~~s~v~--~~~---~IyI~GG~~~~~~~~dv~~yD~~t~~ 267 (650)
.-.+..+.-. .-....++- .++ ++++.+.- ...+|++|..+.+
T Consensus 287 ~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K-----~G~~~vlDr~tG~ 336 (527)
T TIGR03075 287 YQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADR-----NGFFYVLDRTNGK 336 (527)
T ss_pred eeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCC-----CceEEEEECCCCc
Confidence 6553221100 001112222 244 36666543 3468888888775
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=90.50 E-value=34 Score=38.35 Aligned_cols=185 Identities=13% Similarity=0.084 Sum_probs=91.3
Q ss_pred CcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCC
Q 006334 101 KVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVP 180 (650)
Q Consensus 101 ~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~ 180 (650)
....++..|.....-+.+-.. .. .........+++.+++.-... . ...+|++|+.+++-..+. ..+.
T Consensus 196 ~~~~l~i~d~dG~~~~~l~~~---~~--~~~~p~wSPDG~~La~~s~~~--g--~~~L~~~dl~tg~~~~lt---~~~g- 262 (448)
T PRK04792 196 YPYQLMIADYDGYNEQMLLRS---PE--PLMSPAWSPDGRKLAYVSFEN--R--KAEIFVQDIYTQVREKVT---SFPG- 262 (448)
T ss_pred CceEEEEEeCCCCCceEeecC---CC--cccCceECCCCCEEEEEEecC--C--CcEEEEEECCCCCeEEec---CCCC-
Confidence 346788888766554443111 11 111222233554444432211 1 257999999887766554 2221
Q ss_pred CCcceeeee-c-CEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeE
Q 006334 181 RDSHSSNVI-A-NRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDI 258 (650)
Q Consensus 181 R~~hs~v~~-~-~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv 258 (650)
........ + ..|++....++ ..++|.+|+.+.+.+.+..... .........+++.+++..... ...++
T Consensus 263 -~~~~~~wSPDG~~La~~~~~~g---~~~Iy~~dl~tg~~~~lt~~~~----~~~~p~wSpDG~~I~f~s~~~--g~~~I 332 (448)
T PRK04792 263 -INGAPRFSPDGKKLALVLSKDG---QPEIYVVDIATKALTRITRHRA----IDTEPSWHPDGKSLIFTSERG--GKPQI 332 (448)
T ss_pred -CcCCeeECCCCCEEEEEEeCCC---CeEEEEEECCCCCeEECccCCC----CccceEECCCCCEEEEEECCC--CCceE
Confidence 11122222 3 44555433222 2579999999998887763211 111112223444333322211 23589
Q ss_pred EEEECCCCcEEEeecCCCCCCCcceeEEEEE-CCeEEEEcCCCCCCCCCCcEEEEecCC
Q 006334 259 WILNVSTCSWSQLDTCGQQPQGRFSHAAVVT-GSDIVIYGGCGEDERPLNELLVLQLGA 316 (650)
Q Consensus 259 ~~yD~~t~~W~~l~~~~~~p~~R~~hsav~~-~~~lyV~GG~~~~~~~~~d~~~l~l~~ 316 (650)
|.+|+.+++++.+...+. ......+. +++.+++.+... ...+++++++..
T Consensus 333 y~~dl~~g~~~~Lt~~g~-----~~~~~~~SpDG~~l~~~~~~~---g~~~I~~~dl~~ 383 (448)
T PRK04792 333 YRVNLASGKVSRLTFEGE-----QNLGGSITPDGRSMIMVNRTN---GKFNIARQDLET 383 (448)
T ss_pred EEEECCCCCEEEEecCCC-----CCcCeeECCCCCEEEEEEecC---CceEEEEEECCC
Confidence 999999999988853211 11122222 555444533221 234678888753
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=89.98 E-value=24 Score=35.76 Aligned_cols=186 Identities=16% Similarity=0.232 Sum_probs=90.4
Q ss_pred EEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEE-ECC-EEEEEcccCCCcCcCeEEEEECCCCcEE
Q 006334 39 AVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAIL-WGH-KMIVFGGTNGYKKVNDLHILDLESKEWM 116 (650)
Q Consensus 39 ~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~-~~~-~lyVfGG~~~~~~~ndv~~yD~~t~~W~ 116 (650)
.+|+.++.+ +.+++||+.+++....-.... .++ ++.+ .++ .+|+.++. .+.++.||..+.+..
T Consensus 2 ~~~~s~~~d-----~~v~~~d~~t~~~~~~~~~~~--~~~---~l~~~~dg~~l~~~~~~-----~~~v~~~d~~~~~~~ 66 (300)
T TIGR03866 2 KAYVSNEKD-----NTISVIDTATLEVTRTFPVGQ--RPR---GITLSKDGKLLYVCASD-----SDTIQVIDLATGEVI 66 (300)
T ss_pred cEEEEecCC-----CEEEEEECCCCceEEEEECCC--CCC---ceEECCCCCEEEEEECC-----CCeEEEEECCCCcEE
Confidence 466666643 378899998776433322211 122 2333 244 56676643 246889999887765
Q ss_pred eeecCCCCCCCCcccEEEEEcCC-EEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeee-ecCEEE
Q 006334 117 RPECRGAPPSPRESHTATLVGDD-KMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNV-IANRLF 194 (650)
Q Consensus 117 ~l~~~~~~P~~R~~hs~~~~~~~-~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~-~~~~Iy 194 (650)
..- . ....+ ...+...++ .+|+.++.+ +.+.+||+.+.+-.. .++.....+.+.. -++.++
T Consensus 67 ~~~-~-~~~~~---~~~~~~~~g~~l~~~~~~~-------~~l~~~d~~~~~~~~-----~~~~~~~~~~~~~~~dg~~l 129 (300)
T TIGR03866 67 GTL-P-SGPDP---ELFALHPNGKILYIANEDD-------NLVTVIDIETRKVLA-----EIPVGVEPEGMAVSPDGKIV 129 (300)
T ss_pred Eec-c-CCCCc---cEEEECCCCCEEEEEcCCC-------CeEEEEECCCCeEEe-----EeeCCCCcceEEECCCCCEE
Confidence 421 1 11111 223333344 455554421 358889987754221 1111111122332 246666
Q ss_pred EEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCcE
Q 006334 195 VYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCSW 268 (650)
Q Consensus 195 v~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W 268 (650)
+++..+. +.+..||..+.+-......+. +..+.....+++.+++++..+ ..+..||+++.+.
T Consensus 130 ~~~~~~~----~~~~~~d~~~~~~~~~~~~~~----~~~~~~~s~dg~~l~~~~~~~----~~v~i~d~~~~~~ 191 (300)
T TIGR03866 130 VNTSETT----NMAHFIDTKTYEIVDNVLVDQ----RPRFAEFTADGKELWVSSEIG----GTVSVIDVATRKV 191 (300)
T ss_pred EEEecCC----CeEEEEeCCCCeEEEEEEcCC----CccEEEECCCCCEEEEEcCCC----CEEEEEEcCccee
Confidence 6655332 345667877654332111111 112223333455554543322 3688999987654
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=89.88 E-value=35 Score=37.63 Aligned_cols=182 Identities=11% Similarity=0.087 Sum_probs=93.7
Q ss_pred ceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECC-EEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCccc
Q 006334 53 GDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGH-KMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESH 131 (650)
Q Consensus 53 ~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~-~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h 131 (650)
..+|++|+.+++-..+..... ........-++ +|++..-.++ ..++|++|+.+..++.+.. ... ...
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g----~~~~~~~SpDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~lt~---~~~--~~~ 290 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEG----LNGAPAWSPDGSKLAFVLSKDG---NPEIYVMDLASRQLSRVTN---HPA--IDT 290 (430)
T ss_pred CEEEEEECCCCCEEEccCCCC----CcCCeEECCCCCEEEEEEccCC---CceEEEEECCCCCeEEccc---CCC--CcC
Confidence 479999999888777653311 11112222344 4443222111 2689999999998877621 111 111
Q ss_pred EEEEEcCCE-EEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceee-eec-CEEEEEeccCCCCccCeE
Q 006334 132 TATLVGDDK-MVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSN-VIA-NRLFVYGGDCGDQYHGDI 208 (650)
Q Consensus 132 s~~~~~~~~-Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v-~~~-~~Iyv~GG~~~~~~~n~v 208 (650)
......+++ |++.... . . ...+|.+|+.+..+..+...+ ....... .-+ +.|++.....+ ...+
T Consensus 291 ~~~~spDg~~i~f~s~~-~--g--~~~iy~~d~~~g~~~~lt~~~-----~~~~~~~~Spdg~~i~~~~~~~~---~~~l 357 (430)
T PRK00178 291 EPFWGKDGRTLYFTSDR-G--G--KPQIYKVNVNGGRAERVTFVG-----NYNARPRLSADGKTLVMVHRQDG---NFHV 357 (430)
T ss_pred CeEECCCCCEEEEEECC-C--C--CceEEEEECCCCCEEEeecCC-----CCccceEECCCCCEEEEEEccCC---ceEE
Confidence 122233444 4443222 1 1 247899999888887664211 1111122 223 44554433221 2469
Q ss_pred EEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCC
Q 006334 209 DMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTC 266 (650)
Q Consensus 209 ~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~ 266 (650)
+.+|+.+..+..+.... .........+++.+++...... ...++..+...+
T Consensus 358 ~~~dl~tg~~~~lt~~~-----~~~~p~~spdg~~i~~~~~~~g--~~~l~~~~~~g~ 408 (430)
T PRK00178 358 AAQDLQRGSVRILTDTS-----LDESPSVAPNGTMLIYATRQQG--RGVLMLVSINGR 408 (430)
T ss_pred EEEECCCCCEEEccCCC-----CCCCceECCCCCEEEEEEecCC--ceEEEEEECCCC
Confidence 99999998887775311 1111233445666666443222 245777777543
|
|
| >PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] | Back alignment and domain information |
|---|
Probab=89.75 E-value=17 Score=37.60 Aligned_cols=151 Identities=14% Similarity=0.137 Sum_probs=82.7
Q ss_pred eeEEEEECCEEEEEccCCCCcccceEEEEECCCCcEE-E--eecCCC---CCCC---CcceEEEEECCEEEEEcccCCCc
Q 006334 30 GHSACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMVWS-T--LATTGQ---GPGP---RDSHSAILWGHKMIVFGGTNGYK 100 (650)
Q Consensus 30 ghs~v~~~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~-~--l~~~g~---~P~p---R~~hsa~~~~~~lyVfGG~~~~~ 100 (650)
|-..++++|.+|. .....+++.+||+.+.+-. . ++..+. .|-. -...-.++.++-|+|+=......
T Consensus 71 GtG~vVYngslYY-----~~~~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~ 145 (250)
T PF02191_consen 71 GTGHVVYNGSLYY-----NKYNSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNN 145 (250)
T ss_pred cCCeEEECCcEEE-----EecCCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCC
Confidence 3344455555555 2335678999999988755 3 322211 1111 11123345567788775544332
Q ss_pred CcCeEEEEECCCC----cEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCC
Q 006334 101 KVNDLHILDLESK----EWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGD 176 (650)
Q Consensus 101 ~~ndv~~yD~~t~----~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~ 176 (650)
..--+-.+|+.+- +|.. ..+.+..+.+.+++ |.||++-..+... ..-.+.||+.+++=..+.. .
T Consensus 146 g~ivvskld~~tL~v~~tw~T-----~~~k~~~~naFmvC--GvLY~~~s~~~~~---~~I~yafDt~t~~~~~~~i--~ 213 (250)
T PF02191_consen 146 GNIVVSKLDPETLSVEQTWNT-----SYPKRSAGNAFMVC--GVLYATDSYDTRD---TEIFYAFDTYTGKEEDVSI--P 213 (250)
T ss_pred CcEEEEeeCcccCceEEEEEe-----ccCchhhcceeeEe--eEEEEEEECCCCC---cEEEEEEECCCCceeceee--e
Confidence 2223445566553 5654 24555666666665 7899987764322 3345789988776554321 3
Q ss_pred CCCCCCcceeeee---cCEEEEEe
Q 006334 177 IPVPRDSHSSNVI---ANRLFVYG 197 (650)
Q Consensus 177 lP~~R~~hs~v~~---~~~Iyv~G 197 (650)
++.+-..++++.+ +.+||++-
T Consensus 214 f~~~~~~~~~l~YNP~dk~LY~wd 237 (250)
T PF02191_consen 214 FPNPYGNISMLSYNPRDKKLYAWD 237 (250)
T ss_pred eccccCceEeeeECCCCCeEEEEE
Confidence 3333345555555 46899873
|
Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=88.81 E-value=47 Score=37.63 Aligned_cols=77 Identities=18% Similarity=0.233 Sum_probs=41.4
Q ss_pred EEEC-CEEEEEccCCCCcccceEEEEECCCCc--EEEeecCCCCCCCCcceEEEEECCEEEEEcccCCC----cCcCeEE
Q 006334 34 CYSH-GAVYIFGGCCGGLHFGDVLMLNLDTMV--WSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGY----KKVNDLH 106 (650)
Q Consensus 34 v~~~-~~IyvfGG~~~~~~~~dv~~yD~~t~s--W~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~----~~~ndv~ 106 (650)
++.+ ++||+... ...++.+|..+.+ |+.-......+.-....+.++.++.+|+ |..+.. .....++
T Consensus 106 ~~~~~~~V~v~~~------~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~v~ 178 (488)
T cd00216 106 AYWDPRKVFFGTF------DGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVII-GSSGAEFFACGVRGALR 178 (488)
T ss_pred EEccCCeEEEecC------CCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEE-eccccccccCCCCcEEE
Confidence 3445 77777432 2478999987654 7754322100000112334555666665 432221 2246789
Q ss_pred EEECCCC--cEEe
Q 006334 107 ILDLESK--EWMR 117 (650)
Q Consensus 107 ~yD~~t~--~W~~ 117 (650)
.||..+. .|+.
T Consensus 179 alD~~TG~~~W~~ 191 (488)
T cd00216 179 AYDVETGKLLWRF 191 (488)
T ss_pred EEECCCCceeeEe
Confidence 9999886 4865
|
The alignment model contains an 8-bladed beta-propeller. |
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=87.73 E-value=45 Score=36.10 Aligned_cols=201 Identities=24% Similarity=0.324 Sum_probs=100.3
Q ss_pred EEECCEEEEEccCCCCcccceEEEEECCCCc--EEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEECC
Q 006334 34 CYSHGAVYIFGGCCGGLHFGDVLMLNLDTMV--WSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLE 111 (650)
Q Consensus 34 v~~~~~IyvfGG~~~~~~~~dv~~yD~~t~s--W~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~ 111 (650)
+..+++||+.-. ...++.+|+.+.+ |...... -...........+++||+ |..++ .+++||..
T Consensus 65 ~~~dg~v~~~~~------~G~i~A~d~~~g~~~W~~~~~~---~~~~~~~~~~~~~G~i~~-g~~~g-----~~y~ld~~ 129 (370)
T COG1520 65 ADGDGTVYVGTR------DGNIFALNPDTGLVKWSYPLLG---AVAQLSGPILGSDGKIYV-GSWDG-----KLYALDAS 129 (370)
T ss_pred EeeCCeEEEecC------CCcEEEEeCCCCcEEecccCcC---cceeccCceEEeCCeEEE-ecccc-----eEEEEECC
Confidence 667889998611 1279999999877 8654321 001112222333677665 44433 79999996
Q ss_pred CC--cEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCC--CceeeccccCCCCCCCCcceee
Q 006334 112 SK--EWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKT--MRWASPAVKGDIPVPRDSHSSN 187 (650)
Q Consensus 112 t~--~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t--~~Wt~i~~~~~lP~~R~~hs~v 187 (650)
+. .|..-. .. . .+.. ...++.++.+|+.- + .+.++++|..+ ..|+.-...+ + ..+.....+
T Consensus 130 ~G~~~W~~~~-~~--~-~~~~-~~~v~~~~~v~~~s--~------~g~~~al~~~tG~~~W~~~~~~~-~-~~~~~~~~~ 194 (370)
T COG1520 130 TGTLVWSRNV-GG--S-PYYA-SPPVVGDGTVYVGT--D------DGHLYALNADTGTLKWTYETPAP-L-SLSIYGSPA 194 (370)
T ss_pred CCcEEEEEec-CC--C-eEEe-cCcEEcCcEEEEec--C------CCeEEEEEccCCcEEEEEecCCc-c-ccccccCce
Confidence 54 587741 11 1 2222 22334355666532 1 24578888774 4687422111 1 222233333
Q ss_pred eecCEEEEEeccCCCCccCeEEEEECCCC--cEEEeeecCCCCCcccce--EEEEECCEEEEEeccCCCcccCeEEEEEC
Q 006334 188 VIANRLFVYGGDCGDQYHGDIDMLDMNSL--TWSRLAIIGSSPGVRAGH--AAINIGTKVYIIGGVGDKHYYNDIWILNV 263 (650)
Q Consensus 188 ~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~--~W~~i~~~g~~P~~R~~~--s~v~~~~~IyI~GG~~~~~~~~dv~~yD~ 263 (650)
..++.+|+- ... ....++.+|++++ .|+.-... +..+..- ...+....||+-|+.........++++|.
T Consensus 195 ~~~~~vy~~-~~~---~~~~~~a~~~~~G~~~w~~~~~~---~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~ 267 (370)
T COG1520 195 IASGTVYVG-SDG---YDGILYALNAEDGTLKWSQKVSQ---TIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDA 267 (370)
T ss_pred eecceEEEe-cCC---CcceEEEEEccCCcEeeeeeeec---ccCcccccccccccCceEEECCcEEEEecCCeEEEEEc
Confidence 445566654 222 1236899998755 48753211 1111110 12233344555444221222334777877
Q ss_pred CCCc--EEEe
Q 006334 264 STCS--WSQL 271 (650)
Q Consensus 264 ~t~~--W~~l 271 (650)
.+.+ |+.-
T Consensus 268 ~~G~~~W~~~ 277 (370)
T COG1520 268 DTGELIWSFP 277 (370)
T ss_pred CCCceEEEEe
Confidence 7653 7654
|
|
| >smart00284 OLF Olfactomedin-like domains | Back alignment and domain information |
|---|
Probab=87.69 E-value=37 Score=35.12 Aligned_cols=188 Identities=12% Similarity=0.094 Sum_probs=98.1
Q ss_pred CCEEEEEccCCCCcccceEEEEE----CCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEECCC
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLN----LDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLES 112 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD----~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t 112 (650)
++++|++.+.. ...+.++.|. +....+.+.-.. |.+-.+.+.++++|.+|..-. ..+.+.+||+.+
T Consensus 34 ~~~~wv~~~~~--~~~~~v~ey~~~~~f~~~~~~~~~~L---p~~~~GtG~VVYngslYY~~~-----~s~~iiKydL~t 103 (255)
T smart00284 34 KSLYWYMPLNT--RVLRSVREYSSMSDFQMGKNPTDHPL---PHAGQGTGVVVYNGSLYFNKF-----NSHDICRFDLTT 103 (255)
T ss_pred CceEEEEcccc--CCCcEEEEecCHHHHhccCCceEEEC---CCccccccEEEECceEEEEec-----CCccEEEEECCC
Confidence 47888887753 2234566663 344444333233 666778888999999998432 247899999999
Q ss_pred CcEE---eeecCC---CCCCCCcc---cEEEEEcCCEEEEEccccCCCCcccceEEEEecCC----CceeeccccCCCCC
Q 006334 113 KEWM---RPECRG---APPSPRES---HTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKT----MRWASPAVKGDIPV 179 (650)
Q Consensus 113 ~~W~---~l~~~~---~~P~~R~~---hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t----~~Wt~i~~~~~lP~ 179 (650)
++-. .++..+ ..+-...+ .-.+ +.++-|+++=........ --+-.+|+.+ .+|.. ..+.
T Consensus 104 ~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlA-vDE~GLWvIYat~~~~g~--ivvSkLnp~tL~ve~tW~T-----~~~k 175 (255)
T smart00284 104 ETYQKEPLLNGAGYNNRFPYAWGGFSDIDLA-VDENGLWVIYATEQNAGK--IVISKLNPATLTIENTWIT-----TYNK 175 (255)
T ss_pred CcEEEEEecCccccccccccccCCCccEEEE-EcCCceEEEEeccCCCCC--EEEEeeCcccceEEEEEEc-----CCCc
Confidence 8754 221110 11111111 1122 235667766332121111 1123455543 46764 3444
Q ss_pred CCCcceeeeecCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEEC---CEEEEE
Q 006334 180 PRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIG---TKVYII 246 (650)
Q Consensus 180 ~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~---~~IyI~ 246 (650)
...+.+.++ -+.||+.-.. ......-.+.||+.+.+=..+.. +.+.....++++-.+ .+||+.
T Consensus 176 ~sa~naFmv-CGvLY~~~s~-~~~~~~I~yayDt~t~~~~~~~i--~f~n~y~~~s~l~YNP~d~~LY~w 241 (255)
T smart00284 176 RSASNAFMI-CGILYVTRSL-GSKGEKVFYAYDTNTGKEGHLDI--PFENMYEYISMLDYNPNDRKLYAW 241 (255)
T ss_pred ccccccEEE-eeEEEEEccC-CCCCcEEEEEEECCCCccceeee--eeccccccceeceeCCCCCeEEEE
Confidence 444433333 4678887421 11222346889988876443331 234444455565554 478887
|
|
| >PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants | Back alignment and domain information |
|---|
Probab=87.64 E-value=11 Score=34.29 Aligned_cols=85 Identities=12% Similarity=0.190 Sum_probs=56.9
Q ss_pred EECCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCC-cCcCeEEEEE-CCC
Q 006334 35 YSHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGY-KKVNDLHILD-LES 112 (650)
Q Consensus 35 ~~~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~-~~~ndv~~yD-~~t 112 (650)
.++|.||-..-. .....+-+..||..+.+|+.+..............++.++|+|-++.-.... ...-++|+++ ...
T Consensus 3 cinGvly~~a~~-~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~k 81 (129)
T PF08268_consen 3 CINGVLYWLAWS-EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYEK 81 (129)
T ss_pred EECcEEEeEEEE-CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecccc
Confidence 467777776654 3344567899999999998876531223345666777788998876544332 2456899994 556
Q ss_pred CcEEeeec
Q 006334 113 KEWMRPEC 120 (650)
Q Consensus 113 ~~W~~l~~ 120 (650)
.+|.+...
T Consensus 82 ~~Wsk~~~ 89 (129)
T PF08268_consen 82 QEWSKKHI 89 (129)
T ss_pred ceEEEEEE
Confidence 78998633
|
Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain. |
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=87.63 E-value=29 Score=33.80 Aligned_cols=187 Identities=12% Similarity=0.122 Sum_probs=86.1
Q ss_pred CEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCcCcCeEEEEECCCCcEE
Q 006334 38 GAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW-GHKMIVFGGTNGYKKVNDLHILDLESKEWM 116 (650)
Q Consensus 38 ~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~-~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~ 116 (650)
+.++++|+. ...+.+||..+..-...... . ...-..+... +++.+++++.+ ..+..||..+.+..
T Consensus 21 ~~~l~~~~~-----~g~i~i~~~~~~~~~~~~~~---~-~~~i~~~~~~~~~~~l~~~~~~-----~~i~i~~~~~~~~~ 86 (289)
T cd00200 21 GKLLATGSG-----DGTIKVWDLETGELLRTLKG---H-TGPVRDVAASADGTYLASGSSD-----KTIRLWDLETGECV 86 (289)
T ss_pred CCEEEEeec-----CcEEEEEEeeCCCcEEEEec---C-CcceeEEEECCCCCEEEEEcCC-----CeEEEEEcCcccce
Confidence 466666664 24678888776642221111 0 0111122222 45566666652 46888888775332
Q ss_pred eeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeeec-CEEEE
Q 006334 117 RPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIA-NRLFV 195 (650)
Q Consensus 117 ~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~~-~~Iyv 195 (650)
..- . ........+....++.+++.++.+ ..+.+||+.+.+-...- . .....-.++.... +.+++
T Consensus 87 ~~~-~---~~~~~i~~~~~~~~~~~~~~~~~~-------~~i~~~~~~~~~~~~~~---~-~~~~~i~~~~~~~~~~~l~ 151 (289)
T cd00200 87 RTL-T---GHTSYVSSVAFSPDGRILSSSSRD-------KTIKVWDVETGKCLTTL---R-GHTDWVNSVAFSPDGTFVA 151 (289)
T ss_pred EEE-e---ccCCcEEEEEEcCCCCEEEEecCC-------CeEEEEECCCcEEEEEe---c-cCCCcEEEEEEcCcCCEEE
Confidence 210 0 111122233333345666666632 35888998754433211 0 0111112222333 34444
Q ss_pred EeccCCCCccCeEEEEECCCCcE-EEeeecCCCCCcccceEEEEE-CCEEEEEeccCCCcccCeEEEEECCCCcE
Q 006334 196 YGGDCGDQYHGDIDMLDMNSLTW-SRLAIIGSSPGVRAGHAAINI-GTKVYIIGGVGDKHYYNDIWILNVSTCSW 268 (650)
Q Consensus 196 ~GG~~~~~~~n~v~~yd~~t~~W-~~i~~~g~~P~~R~~~s~v~~-~~~IyI~GG~~~~~~~~dv~~yD~~t~~W 268 (650)
.|..+ +.+..||+.+.+- ..+. . ....-.++... +++.+++++. ...+.+||+.+...
T Consensus 152 ~~~~~-----~~i~i~d~~~~~~~~~~~---~--~~~~i~~~~~~~~~~~l~~~~~-----~~~i~i~d~~~~~~ 211 (289)
T cd00200 152 SSSQD-----GTIKLWDLRTGKCVATLT---G--HTGEVNSVAFSPDGEKLLSSSS-----DGTIKLWDLSTGKC 211 (289)
T ss_pred EEcCC-----CcEEEEEccccccceeEe---c--CccccceEEECCCcCEEEEecC-----CCcEEEEECCCCce
Confidence 44323 4688898864432 2222 0 11111223333 3335555554 24688999877543
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=87.50 E-value=52 Score=36.59 Aligned_cols=190 Identities=12% Similarity=0.066 Sum_probs=102.9
Q ss_pred ceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECC-EEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCccc
Q 006334 53 GDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGH-KMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESH 131 (650)
Q Consensus 53 ~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~-~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h 131 (650)
.++|++|+.++.=+.+... + ..........++ +|++.-..++ ..++|.+|..+..++++... +. ...
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~---~-g~~~~~~~SPDG~~la~~~~~~g---~~~Iy~~dl~~g~~~~LT~~---~~--~d~ 280 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASS---Q-GMLVVSDVSKDGSKLLLTMAPKG---QPDIYLYDTNTKTLTQITNY---PG--IDV 280 (419)
T ss_pred CEEEEEECCCCcEEEEecC---C-CcEEeeEECCCCCEEEEEEccCC---CcEEEEEECCCCcEEEcccC---CC--ccC
Confidence 3899999988876666432 1 111122233344 5554433222 46899999999999887211 11 122
Q ss_pred EEEEEcCC-EEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeeecCE-EEEEeccCCCC---ccC
Q 006334 132 TATLVGDD-KMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANR-LFVYGGDCGDQ---YHG 206 (650)
Q Consensus 132 s~~~~~~~-~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~~~~-Iyv~GG~~~~~---~~n 206 (650)
......++ +||+.-.... ..++|++|+++...+.+...+. +.. ...-+++ |.......... ...
T Consensus 281 ~p~~SPDG~~I~F~Sdr~g-----~~~Iy~~dl~~g~~~rlt~~g~-----~~~-~~SPDG~~Ia~~~~~~~~~~~~~~~ 349 (419)
T PRK04043 281 NGNFVEDDKRIVFVSDRLG-----YPNIFMKKLNSGSVEQVVFHGK-----NNS-SVSTYKNYIVYSSRETNNEFGKNTF 349 (419)
T ss_pred ccEECCCCCEEEEEECCCC-----CceEEEEECCCCCeEeCccCCC-----cCc-eECCCCCEEEEEEcCCCcccCCCCc
Confidence 22333344 5666543321 2579999999988876653221 222 2222444 43333322111 235
Q ss_pred eEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCcEEEee
Q 006334 207 DIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLD 272 (650)
Q Consensus 207 ~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~ 272 (650)
+++.+|+++..+..+... .........-+++.++|-... .....++.+++..+.=..++
T Consensus 350 ~I~v~d~~~g~~~~LT~~-----~~~~~p~~SPDG~~I~f~~~~--~~~~~L~~~~l~g~~~~~l~ 408 (419)
T PRK04043 350 NLYLISTNSDYIRRLTAN-----GVNQFPRFSSDGGSIMFIKYL--GNQSALGIIRLNYNKSFLFP 408 (419)
T ss_pred EEEEEECCCCCeEECCCC-----CCcCCeEECCCCCEEEEEEcc--CCcEEEEEEecCCCeeEEee
Confidence 899999999999888732 122223344455544443222 22346888888766544443
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=87.25 E-value=53 Score=36.43 Aligned_cols=190 Identities=8% Similarity=0.011 Sum_probs=93.2
Q ss_pred ceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccE
Q 006334 53 GDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHT 132 (650)
Q Consensus 53 ~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs 132 (650)
.++|.+|........+..... ........-+++.++|..... ....+|.+|+.+.+=+.+. ..+ ....+
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~----~v~~p~wSPDG~~la~~s~~~--~~~~I~~~dl~~g~~~~l~---~~~--g~~~~ 244 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPE----PIISPAWSPDGTKLAYVSFES--KKPVVYVHDLATGRRRVVA---NFK--GSNSA 244 (427)
T ss_pred cEEEEECCCCCCceEeccCCC----CcccceEcCCCCEEEEEEccC--CCcEEEEEECCCCCEEEee---cCC--CCccc
Confidence 467777765544444432211 111222233555555544322 2357999999888655541 111 11122
Q ss_pred EEEEcCC-EEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee-cCE-EEEEeccCCCCccCeEE
Q 006334 133 ATLVGDD-KMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI-ANR-LFVYGGDCGDQYHGDID 209 (650)
Q Consensus 133 ~~~~~~~-~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~-~~~-Iyv~GG~~~~~~~n~v~ 209 (650)
.....++ +|++.... +. ..++|.+|........+.. .. .. ....... +++ |++.....+ ...+|
T Consensus 245 ~~~SPDG~~la~~~~~-~g----~~~Iy~~d~~~~~~~~lt~---~~-~~-~~~~~wSpDG~~l~f~s~~~g---~~~Iy 311 (427)
T PRK02889 245 PAWSPDGRTLAVALSR-DG----NSQIYTVNADGSGLRRLTQ---SS-GI-DTEPFFSPDGRSIYFTSDRGG---APQIY 311 (427)
T ss_pred eEECCCCCEEEEEEcc-CC----CceEEEEECCCCCcEECCC---CC-CC-CcCeEEcCCCCEEEEEecCCC---CcEEE
Confidence 3333455 44443332 11 2579999988776665541 11 11 1112222 344 444332211 24789
Q ss_pred EEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCcEEEee
Q 006334 210 MLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLD 272 (650)
Q Consensus 210 ~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~ 272 (650)
.++..+...+.+...+ ..........+++.+++....+. ...++++|+.+.....+.
T Consensus 312 ~~~~~~g~~~~lt~~g----~~~~~~~~SpDG~~Ia~~s~~~g--~~~I~v~d~~~g~~~~lt 368 (427)
T PRK02889 312 RMPASGGAAQRVTFTG----SYNTSPRISPDGKLLAYISRVGG--AFKLYVQDLATGQVTALT 368 (427)
T ss_pred EEECCCCceEEEecCC----CCcCceEECCCCCEEEEEEccCC--cEEEEEEECCCCCeEEcc
Confidence 9998888777775221 11111223334444434332222 237999999998887765
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=86.95 E-value=37 Score=34.31 Aligned_cols=147 Identities=16% Similarity=0.255 Sum_probs=71.7
Q ss_pred CEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-C-CEEEEEcccCCCcCcCeEEEEECCCCcE
Q 006334 38 GAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW-G-HKMIVFGGTNGYKKVNDLHILDLESKEW 115 (650)
Q Consensus 38 ~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~-~-~~lyVfGG~~~~~~~ndv~~yD~~t~~W 115 (650)
..+|+.++. .+.+++||..+.+.......+ ..+ ..+++. + +.+|+.++.+ +.+..||+.+.+-
T Consensus 43 ~~l~~~~~~-----~~~v~~~d~~~~~~~~~~~~~--~~~---~~~~~~~~g~~l~~~~~~~-----~~l~~~d~~~~~~ 107 (300)
T TIGR03866 43 KLLYVCASD-----SDTIQVIDLATGEVIGTLPSG--PDP---ELFALHPNGKILYIANEDD-----NLVTVIDIETRKV 107 (300)
T ss_pred CEEEEEECC-----CCeEEEEECCCCcEEEeccCC--CCc---cEEEECCCCCEEEEEcCCC-----CeEEEEECCCCeE
Confidence 356776653 246889999887665422211 111 122222 3 4566655422 4688999987643
Q ss_pred EeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeeecCEEEE
Q 006334 116 MRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFV 195 (650)
Q Consensus 116 ~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv 195 (650)
... .+.......+....++.+++++..+. +.++.||..+..-......+. +..+....-+++.++
T Consensus 108 ~~~-----~~~~~~~~~~~~~~dg~~l~~~~~~~------~~~~~~d~~~~~~~~~~~~~~----~~~~~~~s~dg~~l~ 172 (300)
T TIGR03866 108 LAE-----IPVGVEPEGMAVSPDGKIVVNTSETT------NMAHFIDTKTYEIVDNVLVDQ----RPRFAEFTADGKELW 172 (300)
T ss_pred EeE-----eeCCCCcceEEECCCCCEEEEEecCC------CeEEEEeCCCCeEEEEEEcCC----CccEEEECCCCCEEE
Confidence 221 11111123444455677777765421 235567876543322110111 111222222444444
Q ss_pred EeccCCCCccCeEEEEECCCCcE
Q 006334 196 YGGDCGDQYHGDIDMLDMNSLTW 218 (650)
Q Consensus 196 ~GG~~~~~~~n~v~~yd~~t~~W 218 (650)
+++... +.+..||+.+.+.
T Consensus 173 ~~~~~~----~~v~i~d~~~~~~ 191 (300)
T TIGR03866 173 VSSEIG----GTVSVIDVATRKV 191 (300)
T ss_pred EEcCCC----CEEEEEEcCccee
Confidence 444222 4688999887654
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=86.58 E-value=57 Score=36.15 Aligned_cols=206 Identities=11% Similarity=0.068 Sum_probs=99.0
Q ss_pred cceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCccc
Q 006334 52 FGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESH 131 (650)
Q Consensus 52 ~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h 131 (650)
..++|+.|.....=..+.... .........-+++.+++..... ....+|.+|+.+.+-+.+.. .+. ...
T Consensus 183 ~~~i~i~d~dg~~~~~lt~~~----~~v~~p~wSPDG~~la~~s~~~--~~~~i~i~dl~tg~~~~l~~---~~g--~~~ 251 (429)
T PRK01742 183 PYEVRVADYDGFNQFIVNRSS----QPLMSPAWSPDGSKLAYVSFEN--KKSQLVVHDLRSGARKVVAS---FRG--HNG 251 (429)
T ss_pred eEEEEEECCCCCCceEeccCC----CccccceEcCCCCEEEEEEecC--CCcEEEEEeCCCCceEEEec---CCC--ccC
Confidence 357888887654322222211 1122222333555555554432 13568999998877655521 111 112
Q ss_pred EEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeee-ecCE-EEEEeccCCCCccCeEE
Q 006334 132 TATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNV-IANR-LFVYGGDCGDQYHGDID 209 (650)
Q Consensus 132 s~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~-~~~~-Iyv~GG~~~~~~~n~v~ 209 (650)
......+++.++++...++ ..++|.+|+.+.....+.. .. ........ -+++ |++.....+ ...+|
T Consensus 252 ~~~wSPDG~~La~~~~~~g----~~~Iy~~d~~~~~~~~lt~---~~--~~~~~~~wSpDG~~i~f~s~~~g---~~~I~ 319 (429)
T PRK01742 252 APAFSPDGSRLAFASSKDG----VLNIYVMGANGGTPSQLTS---GA--GNNTEPSWSPDGQSILFTSDRSG---SPQVY 319 (429)
T ss_pred ceeECCCCCEEEEEEecCC----cEEEEEEECCCCCeEeecc---CC--CCcCCEEECCCCCEEEEEECCCC---CceEE
Confidence 2333446655555432121 1358899988777665541 11 11112222 2344 444433222 24778
Q ss_pred EEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCcEEEeecCCCCCCCcceeEEEEE
Q 006334 210 MLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVT 289 (650)
Q Consensus 210 ~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~~~~~~p~~R~~hsav~~ 289 (650)
.++.....-..+. . . .+ ......+++.+++.+. +.++.+|+.+..+..+... . . .....+.
T Consensus 320 ~~~~~~~~~~~l~---~--~-~~-~~~~SpDG~~ia~~~~------~~i~~~Dl~~g~~~~lt~~--~---~-~~~~~~s 380 (429)
T PRK01742 320 RMSASGGGASLVG---G--R-GY-SAQISADGKTLVMING------DNVVKQDLTSGSTEVLSST--F---L-DESPSIS 380 (429)
T ss_pred EEECCCCCeEEec---C--C-CC-CccCCCCCCEEEEEcC------CCEEEEECCCCCeEEecCC--C---C-CCCceEC
Confidence 8887665443332 1 1 11 1222334444334332 4688899999998876431 1 1 1122222
Q ss_pred -CCeEEEEcCC
Q 006334 290 -GSDIVIYGGC 299 (650)
Q Consensus 290 -~~~lyV~GG~ 299 (650)
++++++++..
T Consensus 381 PdG~~i~~~s~ 391 (429)
T PRK01742 381 PNGIMIIYSST 391 (429)
T ss_pred CCCCEEEEEEc
Confidence 5667777653
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=86.58 E-value=50 Score=35.46 Aligned_cols=242 Identities=12% Similarity=0.099 Sum_probs=116.3
Q ss_pred CCcCCCeEEeeecCCCCCCCcceeEEEEEC-CEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE
Q 006334 8 NAKRAAMWLYPKVLGFNPPERWGHSACYSH-GAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW 86 (650)
Q Consensus 8 ~~~~~~~W~~~~~~g~~P~~R~ghs~v~~~-~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~ 86 (650)
.......|..... |....-.++.+.+ +..|++|-. ..+++=+-.-.+|+....... ........+.+.
T Consensus 30 ~~~~~~~W~~~~~----~~~~~l~~v~F~d~~~g~avG~~------G~il~T~DgG~tW~~~~~~~~-~~~~~l~~v~~~ 98 (334)
T PRK13684 30 PMLSSSPWQVIDL----PTEANLLDIAFTDPNHGWLVGSN------RTLLETNDGGETWEERSLDLP-EENFRLISISFK 98 (334)
T ss_pred ccccCCCcEEEec----CCCCceEEEEEeCCCcEEEEECC------CEEEEEcCCCCCceECccCCc-ccccceeeeEEc
Confidence 3344567987653 3333444555555 466766632 345555555678998754211 111222333344
Q ss_pred CCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCC
Q 006334 87 GHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTM 166 (650)
Q Consensus 87 ~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~ 166 (650)
++..|+.|.. ..+++=+=.-.+|+++......+. .......+.++.+++.|..+ .+++-+-.-.
T Consensus 99 ~~~~~~~G~~------g~i~~S~DgG~tW~~~~~~~~~~~--~~~~i~~~~~~~~~~~g~~G--------~i~~S~DgG~ 162 (334)
T PRK13684 99 GDEGWIVGQP------SLLLHTTDGGKNWTRIPLSEKLPG--SPYLITALGPGTAEMATNVG--------AIYRTTDGGK 162 (334)
T ss_pred CCcEEEeCCC------ceEEEECCCCCCCeEccCCcCCCC--CceEEEEECCCcceeeeccc--------eEEEECCCCC
Confidence 5566766532 223332223358998742211222 22234444456677665532 3554444457
Q ss_pred ceeeccccCCCCCCCCcceeeeecCEEEEEeccCCCCccCeEEEE-ECCCCcEEEeeecCCCCCcccceEEEE-ECCEEE
Q 006334 167 RWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDML-DMNSLTWSRLAIIGSSPGVRAGHAAIN-IGTKVY 244 (650)
Q Consensus 167 ~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~y-d~~t~~W~~i~~~g~~P~~R~~~s~v~-~~~~Iy 244 (650)
+|+.+.. +..-..+.+....+..|++.|..+ .++.- |....+|+.+.. +..+.-.+++. .+++++
T Consensus 163 tW~~~~~----~~~g~~~~i~~~~~g~~v~~g~~G-----~i~~s~~~gg~tW~~~~~----~~~~~l~~i~~~~~g~~~ 229 (334)
T PRK13684 163 NWEALVE----DAAGVVRNLRRSPDGKYVAVSSRG-----NFYSTWEPGQTAWTPHQR----NSSRRLQSMGFQPDGNLW 229 (334)
T ss_pred CceeCcC----CCcceEEEEEECCCCeEEEEeCCc-----eEEEEcCCCCCeEEEeeC----CCcccceeeeEcCCCCEE
Confidence 9997652 112223334444444444444322 33332 344567999862 23344444444 356888
Q ss_pred EEeccCCCcccCeEEEE--ECCCCcEEEeecCCCCCCCcce-eEEEEE-CCeEEEEcC
Q 006334 245 IIGGVGDKHYYNDIWIL--NVSTCSWSQLDTCGQQPQGRFS-HAAVVT-GSDIVIYGG 298 (650)
Q Consensus 245 I~GG~~~~~~~~dv~~y--D~~t~~W~~l~~~~~~p~~R~~-hsav~~-~~~lyV~GG 298 (650)
++|... ..++ +-.-.+|+.+... .....+. +++++. ++.+++.|.
T Consensus 230 ~vg~~G-------~~~~~s~d~G~sW~~~~~~--~~~~~~~l~~v~~~~~~~~~~~G~ 278 (334)
T PRK13684 230 MLARGG-------QIRFNDPDDLESWSKPIIP--EITNGYGYLDLAYRTPGEIWAGGG 278 (334)
T ss_pred EEecCC-------EEEEccCCCCCccccccCC--ccccccceeeEEEcCCCCEEEEcC
Confidence 886432 1223 1233589976421 1111122 233333 557888775
|
|
| >smart00284 OLF Olfactomedin-like domains | Back alignment and domain information |
|---|
Probab=86.54 E-value=34 Score=35.43 Aligned_cols=151 Identities=11% Similarity=0.045 Sum_probs=77.0
Q ss_pred ceeEEEEECCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCC------CCC---CCcceEEEEECCEEEEEcccCCC
Q 006334 29 WGHSACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQ------GPG---PRDSHSAILWGHKMIVFGGTNGY 99 (650)
Q Consensus 29 ~ghs~v~~~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~------~P~---pR~~hsa~~~~~~lyVfGG~~~~ 99 (650)
.|-..++++|.+|.-- ...+.+.+||+.+.+-......+. .|- +-...-.++.++-|+|+=.....
T Consensus 75 ~GtG~VVYngslYY~~-----~~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~ 149 (255)
T smart00284 75 QGTGVVVYNGSLYFNK-----FNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQN 149 (255)
T ss_pred ccccEEEECceEEEEe-----cCCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCC
Confidence 4445566666666622 234689999999987653332210 111 01112234446667665222211
Q ss_pred cCcCeEEEEECCCC----cEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccC
Q 006334 100 KKVNDLHILDLESK----EWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKG 175 (650)
Q Consensus 100 ~~~ndv~~yD~~t~----~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~ 175 (650)
...--+-++|+.+- +|.. ..+....+.+.+++ +.||++-..... ...-.+.||+.+++=..+. -
T Consensus 150 ~g~ivvSkLnp~tL~ve~tW~T-----~~~k~sa~naFmvC--GvLY~~~s~~~~---~~~I~yayDt~t~~~~~~~--i 217 (255)
T smart00284 150 AGKIVISKLNPATLTIENTWIT-----TYNKRSASNAFMIC--GILYVTRSLGSK---GEKVFYAYDTNTGKEGHLD--I 217 (255)
T ss_pred CCCEEEEeeCcccceEEEEEEc-----CCCcccccccEEEe--eEEEEEccCCCC---CcEEEEEEECCCCccceee--e
Confidence 11112334566553 5654 34555556666665 689998532211 1234678898876533221 1
Q ss_pred CCCCCCCcceeeee---cCEEEEE
Q 006334 176 DIPVPRDSHSSNVI---ANRLFVY 196 (650)
Q Consensus 176 ~lP~~R~~hs~v~~---~~~Iyv~ 196 (650)
+++.....++++-+ +.+||+.
T Consensus 218 ~f~n~y~~~s~l~YNP~d~~LY~w 241 (255)
T smart00284 218 PFENMYEYISMLDYNPNDRKLYAW 241 (255)
T ss_pred eeccccccceeceeCCCCCeEEEE
Confidence 23333334455544 4789987
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=86.11 E-value=51 Score=35.06 Aligned_cols=243 Identities=14% Similarity=0.177 Sum_probs=106.3
Q ss_pred CCCeEEeeecCCCCCCCcceeEEEEEC-CEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCE
Q 006334 11 RAAMWLYPKVLGFNPPERWGHSACYSH-GAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHK 89 (650)
Q Consensus 11 ~~~~W~~~~~~g~~P~~R~ghs~v~~~-~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~ 89 (650)
....|..++..... .-..+.+.+ +.-|++|-. ..+++=+-.-.+|..+......+......++.+.++.
T Consensus 4 ~~~~W~~v~l~t~~----~l~dV~F~d~~~G~~VG~~------g~il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~ 73 (302)
T PF14870_consen 4 SGNSWQQVSLPTDK----PLLDVAFVDPNHGWAVGAY------GTILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNE 73 (302)
T ss_dssp SS--EEEEE-S-SS-----EEEEEESSSS-EEEEETT------TEEEEESSTTSS-EE-----S-----EEEEEEEETTE
T ss_pred cCCCcEEeecCCCC----ceEEEEEecCCEEEEEecC------CEEEEECCCCccccccccCCCccceeeEEEEEecCCc
Confidence 45679987754333 344455554 688888753 2455555566789987643222212233455566888
Q ss_pred EEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCcee
Q 006334 90 MIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWA 169 (650)
Q Consensus 90 lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt 169 (650)
.||.|-. .-++.-.=.-.+|+++...... +-.......+.++.++++|... .+++-.=.-.+|+
T Consensus 74 g~ivG~~------g~ll~T~DgG~tW~~v~l~~~l--pgs~~~i~~l~~~~~~l~~~~G--------~iy~T~DgG~tW~ 137 (302)
T PF14870_consen 74 GWIVGEP------GLLLHTTDGGKTWERVPLSSKL--PGSPFGITALGDGSAELAGDRG--------AIYRTTDGGKTWQ 137 (302)
T ss_dssp EEEEEET------TEEEEESSTTSS-EE----TT---SS-EEEEEEEETTEEEEEETT----------EEEESSTTSSEE
T ss_pred eEEEcCC------ceEEEecCCCCCcEEeecCCCC--CCCeeEEEEcCCCcEEEEcCCC--------cEEEeCCCCCCee
Confidence 9988742 1233333345689998543222 3334455666678888876542 3555443456899
Q ss_pred eccccCCCCCCCCcceeeee-cCEEEEEeccCCCCccCeEE-EEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEe
Q 006334 170 SPAVKGDIPVPRDSHSSNVI-ANRLFVYGGDCGDQYHGDID-MLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIG 247 (650)
Q Consensus 170 ~i~~~~~lP~~R~~hs~v~~-~~~Iyv~GG~~~~~~~n~v~-~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~G 247 (650)
.+.... . -....+... ++++++++- . ..++ ..|+....|..... .-..|.......-++.++++.
T Consensus 138 ~~~~~~---~-gs~~~~~r~~dG~~vavs~-~-----G~~~~s~~~G~~~w~~~~r---~~~~riq~~gf~~~~~lw~~~ 204 (302)
T PF14870_consen 138 AVVSET---S-GSINDITRSSDGRYVAVSS-R-----GNFYSSWDPGQTTWQPHNR---NSSRRIQSMGFSPDGNLWMLA 204 (302)
T ss_dssp EEE-S--------EEEEEE-TTS-EEEEET-T-----SSEEEEE-TT-SS-EEEE-----SSS-EEEEEE-TTS-EEEEE
T ss_pred EcccCC---c-ceeEeEEECCCCcEEEEEC-c-----ccEEEEecCCCccceEEcc---CccceehhceecCCCCEEEEe
Confidence 765211 1 111122222 456555553 2 2343 56777788999873 222343333344456777764
Q ss_pred ccCCCcccCeEEEEE--CCCCcEEEeecCCCCCCCcceeEEEEE--CCeEEEEcCCC
Q 006334 248 GVGDKHYYNDIWILN--VSTCSWSQLDTCGQQPQGRFSHAAVVT--GSDIVIYGGCG 300 (650)
Q Consensus 248 G~~~~~~~~dv~~yD--~~t~~W~~l~~~~~~p~~R~~hsav~~--~~~lyV~GG~~ 300 (650)
..+ .+++=+ -...+|.+-.. +.....++.--+.. ++.+++.||..
T Consensus 205 -~Gg-----~~~~s~~~~~~~~w~~~~~--~~~~~~~~~ld~a~~~~~~~wa~gg~G 253 (302)
T PF14870_consen 205 -RGG-----QIQFSDDPDDGETWSEPII--PIKTNGYGILDLAYRPPNEIWAVGGSG 253 (302)
T ss_dssp -TTT-----EEEEEE-TTEEEEE---B---TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred -CCc-----EEEEccCCCCccccccccC--CcccCceeeEEEEecCCCCEEEEeCCc
Confidence 221 344444 33456776321 22334454333333 46799998853
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=86.06 E-value=35 Score=33.19 Aligned_cols=186 Identities=11% Similarity=0.085 Sum_probs=84.0
Q ss_pred CEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCcCcCeEEEEECCCCcEE
Q 006334 38 GAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW-GHKMIVFGGTNGYKKVNDLHILDLESKEWM 116 (650)
Q Consensus 38 ~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~-~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~ 116 (650)
+..++.++. ...+++||..+......-.. ....-.++... ++++++.|+.+ ..+..||+.+.+..
T Consensus 63 ~~~l~~~~~-----~~~i~i~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~ 128 (289)
T cd00200 63 GTYLASGSS-----DKTIRLWDLETGECVRTLTG----HTSYVSSVAFSPDGRILSSSSRD-----KTIKVWDVETGKCL 128 (289)
T ss_pred CCEEEEEcC-----CCeEEEEEcCcccceEEEec----cCCcEEEEEEcCCCCEEEEecCC-----CeEEEEECCCcEEE
Confidence 345555554 24688888876532221111 01112223333 34666666522 46888988755433
Q ss_pred eeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee-cCEEEE
Q 006334 117 RPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI-ANRLFV 195 (650)
Q Consensus 117 ~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~-~~~Iyv 195 (650)
..- . .....-..+....++.+++.|..+ +.+.+||+.+.+-...- ... ...-.++... ++..++
T Consensus 129 ~~~---~-~~~~~i~~~~~~~~~~~l~~~~~~-------~~i~i~d~~~~~~~~~~---~~~-~~~i~~~~~~~~~~~l~ 193 (289)
T cd00200 129 TTL---R-GHTDWVNSVAFSPDGTFVASSSQD-------GTIKLWDLRTGKCVATL---TGH-TGEVNSVAFSPDGEKLL 193 (289)
T ss_pred EEe---c-cCCCcEEEEEEcCcCCEEEEEcCC-------CcEEEEEccccccceeE---ecC-ccccceEEECCCcCEEE
Confidence 210 0 111112233333334555554422 35888888643321111 000 1111222333 333555
Q ss_pred EeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEEC-CEEEEEeccCCCcccCeEEEEECCCC
Q 006334 196 YGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIG-TKVYIIGGVGDKHYYNDIWILNVSTC 266 (650)
Q Consensus 196 ~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~-~~IyI~GG~~~~~~~~dv~~yD~~t~ 266 (650)
+++.+ +.+..||..+......-. .....-.++.... +.+++.++. ...++.||+.+.
T Consensus 194 ~~~~~-----~~i~i~d~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~~~~-----~~~i~i~~~~~~ 251 (289)
T cd00200 194 SSSSD-----GTIKLWDLSTGKCLGTLR----GHENGVNSVAFSPDGYLLASGSE-----DGTIRVWDLRTG 251 (289)
T ss_pred EecCC-----CcEEEEECCCCceecchh----hcCCceEEEEEcCCCcEEEEEcC-----CCcEEEEEcCCc
Confidence 55542 478899987644332210 1111222333333 455555442 236888888764
|
|
| >PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants | Back alignment and domain information |
|---|
Probab=85.98 E-value=18 Score=32.91 Aligned_cols=85 Identities=16% Similarity=0.211 Sum_probs=57.1
Q ss_pred eecCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCC-cccCeEEEE-ECCC
Q 006334 188 VIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDK-HYYNDIWIL-NVST 265 (650)
Q Consensus 188 ~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~-~~~~dv~~y-D~~t 265 (650)
.++|-+|-..-. .....+.+.+||+.+.+|+.+..............++.++++|-++.-.... ...-++|++ |.++
T Consensus 3 cinGvly~~a~~-~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~k 81 (129)
T PF08268_consen 3 CINGVLYWLAWS-EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYEK 81 (129)
T ss_pred EECcEEEeEEEE-CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecccc
Confidence 456766655443 3344578899999999999988421123446667788889988887543322 234689999 4667
Q ss_pred CcEEEeec
Q 006334 266 CSWSQLDT 273 (650)
Q Consensus 266 ~~W~~l~~ 273 (650)
..|.+...
T Consensus 82 ~~Wsk~~~ 89 (129)
T PF08268_consen 82 QEWSKKHI 89 (129)
T ss_pred ceEEEEEE
Confidence 88998754
|
Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain. |
| >PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=85.86 E-value=36 Score=35.85 Aligned_cols=131 Identities=20% Similarity=0.280 Sum_probs=69.6
Q ss_pred cccceEEEEECCCCc----EEEeecCCCCCCCCcceEE-EEE---CCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecC
Q 006334 50 LHFGDVLMLNLDTMV----WSTLATTGQGPGPRDSHSA-ILW---GHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECR 121 (650)
Q Consensus 50 ~~~~dv~~yD~~t~s----W~~l~~~g~~P~pR~~hsa-~~~---~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~ 121 (650)
..++.+..||..+++ |..--.. +..-++=.. .++ +++||+.=+ ++.. --.+|.+|..+..-+++.
T Consensus 75 NKYSHVH~yd~e~~~VrLLWkesih~---~~~WaGEVSdIlYdP~~D~LLlAR~-DGh~-nLGvy~ldr~~g~~~~L~-- 147 (339)
T PF09910_consen 75 NKYSHVHEYDTENDSVRLLWKESIHD---KTKWAGEVSDILYDPYEDRLLLARA-DGHA-NLGVYSLDRRTGKAEKLS-- 147 (339)
T ss_pred eccceEEEEEcCCCeEEEEEecccCC---ccccccchhheeeCCCcCEEEEEec-CCcc-eeeeEEEcccCCceeecc--
Confidence 346889999998876 4432222 222222222 222 467776432 2222 246899999999888762
Q ss_pred CCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCce--eecccc----CCCCCCCCcceeeeecCEEEE
Q 006334 122 GAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRW--ASPAVK----GDIPVPRDSHSSNVIANRLFV 195 (650)
Q Consensus 122 ~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~W--t~i~~~----~~lP~~R~~hs~v~~~~~Iyv 195 (650)
..|.. -.+.+.|..++ |. ..-..-.+.+.+||+.+++| +..+.. +.....|....++...+++|+
T Consensus 148 -~~ps~----KG~~~~D~a~F---~i-~~~~~g~~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~fa 218 (339)
T PF09910_consen 148 -SNPSL----KGTLVHDYACF---GI-NNFHKGVSGIHCLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFA 218 (339)
T ss_pred -CCCCc----CceEeeeeEEE---ec-cccccCCceEEEEEccCCeEEEEecccccCCCCCceEeeccccEEEEeeeEEE
Confidence 22322 12233233333 22 11223367899999999999 433211 111222334455555677666
Q ss_pred E
Q 006334 196 Y 196 (650)
Q Consensus 196 ~ 196 (650)
|
T Consensus 219 F 219 (339)
T PF09910_consen 219 F 219 (339)
T ss_pred E
Confidence 5
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.06 E-value=49 Score=33.94 Aligned_cols=118 Identities=14% Similarity=0.187 Sum_probs=68.1
Q ss_pred cEEEEE-cCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeeec-CEEEEEeccCCCCccCeE
Q 006334 131 HTATLV-GDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIA-NRLFVYGGDCGDQYHGDI 208 (650)
Q Consensus 131 hs~~~~-~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~~-~~Iyv~GG~~~~~~~n~v 208 (650)
.++.+. .+|.|+..||- ..+|+.|+++++.+..- .+ ..-+-|+++.-+ +.=++-|+.++ .+
T Consensus 118 Nam~ldP~enSi~~AgGD--------~~~y~~dlE~G~i~r~~-rG---HtDYvH~vv~R~~~~qilsG~EDG-----tv 180 (325)
T KOG0649|consen 118 NAMWLDPSENSILFAGGD--------GVIYQVDLEDGRIQREY-RG---HTDYVHSVVGRNANGQILSGAEDG-----TV 180 (325)
T ss_pred ceeEeccCCCcEEEecCC--------eEEEEEEecCCEEEEEE-cC---CcceeeeeeecccCcceeecCCCc-----cE
Confidence 445544 46889998874 25889999999887632 11 234567777644 33444555553 67
Q ss_pred EEEECCCCcEEEe-eecCC--C--CCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCcEEEe
Q 006334 209 DMLDMNSLTWSRL-AIIGS--S--PGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQL 271 (650)
Q Consensus 209 ~~yd~~t~~W~~i-~~~g~--~--P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l 271 (650)
.++|..+.+-..+ ...-. + |.--....+...+...+|+||-- .+-.+++...+-+.+
T Consensus 181 RvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp------~lslwhLrsse~t~v 242 (325)
T KOG0649|consen 181 RVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGP------KLSLWHLRSSESTCV 242 (325)
T ss_pred EEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCC------ceeEEeccCCCceEE
Confidence 7888887765443 22111 1 11122335566666788888742 344555555544443
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=83.74 E-value=60 Score=33.96 Aligned_cols=185 Identities=12% Similarity=0.068 Sum_probs=96.0
Q ss_pred eEEEEECCCCcEEEeecCCCCCCCCcce-EEEEE-CCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCccc
Q 006334 54 DVLMLNLDTMVWSTLATTGQGPGPRDSH-SAILW-GHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESH 131 (650)
Q Consensus 54 dv~~yD~~t~sW~~l~~~g~~P~pR~~h-sa~~~-~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h 131 (650)
-+-++|+.+...++.+...+. +-.+. ++++. .+.|+..|-..-.+ ++|+.++.-+.. ..|..-.-.
T Consensus 125 aI~R~dpkt~evt~f~lp~~~--a~~nlet~vfD~~G~lWFt~q~G~yG------rLdPa~~~i~vf----paPqG~gpy 192 (353)
T COG4257 125 AIGRLDPKTLEVTRFPLPLEH--ADANLETAVFDPWGNLWFTGQIGAYG------RLDPARNVISVF----PAPQGGGPY 192 (353)
T ss_pred eeEEecCcccceEEeeccccc--CCCcccceeeCCCccEEEeeccccce------ecCcccCceeee----ccCCCCCCc
Confidence 455666666665555432111 11112 22332 36677665322222 556666544332 122223334
Q ss_pred EEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCC-Ccceeeee--cCEEEEEeccCCCCccCeE
Q 006334 132 TATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPR-DSHSSNVI--ANRLFVYGGDCGDQYHGDI 208 (650)
Q Consensus 132 s~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R-~~hs~v~~--~~~Iyv~GG~~~~~~~n~v 208 (650)
.+++..++.+|+.-=. -|-+-++|+.+..=+.++ .|.+. .+.--+.. -+++.+. ......+
T Consensus 193 Gi~atpdGsvwyasla-------gnaiaridp~~~~aev~p----~P~~~~~gsRriwsdpig~~wit-----twg~g~l 256 (353)
T COG4257 193 GICATPDGSVWYASLA-------GNAIARIDPFAGHAEVVP----QPNALKAGSRRIWSDPIGRAWIT-----TWGTGSL 256 (353)
T ss_pred ceEECCCCcEEEEecc-------ccceEEcccccCCcceec----CCCcccccccccccCccCcEEEe-----ccCCcee
Confidence 5566668888885222 123667777666444333 22221 11111222 2556664 2234689
Q ss_pred EEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCcEEEeec
Q 006334 209 DMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLDT 273 (650)
Q Consensus 209 ~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~~ 273 (650)
++||+.+..|.+.+..+. .+|....-+-..+++++. .-..+.|.+||+++.+++.++.
T Consensus 257 ~rfdPs~~sW~eypLPgs--~arpys~rVD~~grVW~s-----ea~agai~rfdpeta~ftv~p~ 314 (353)
T COG4257 257 HRFDPSVTSWIEYPLPGS--KARPYSMRVDRHGRVWLS-----EADAGAIGRFDPETARFTVLPI 314 (353)
T ss_pred eEeCcccccceeeeCCCC--CCCcceeeeccCCcEEee-----ccccCceeecCcccceEEEecC
Confidence 999999999999873221 233333223333566664 2234679999999999998864
|
|
| >TIGR01624 LRP1_Cterm LRP1 C-terminal domain | Back alignment and domain information |
|---|
Probab=82.51 E-value=2.2 Score=31.95 Aligned_cols=33 Identities=33% Similarity=0.558 Sum_probs=24.1
Q ss_pred eeeeeeccc-cceeEEEEEEccEEeeeeeeCCCC
Q 006334 523 VQGKVDGAF-DSGFLMTATINGRIFRGVLFPPGP 555 (650)
Q Consensus 523 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 555 (650)
|.+.=||-= .-.|--|+.++|.+|+|+||--||
T Consensus 17 vs~idd~~~~e~aYQt~V~IgGHvFkGiLyDqG~ 50 (50)
T TIGR01624 17 VTAIDDGEQAEYAYQATVTIGGHVFKGFLHDQGL 50 (50)
T ss_pred EeccCCCCCceEEEEEEEEECceEEeeEEeccCC
Confidence 444444432 247888999999999999998776
|
This model represents a tightly conserved small domain found in LRP1 and related plant proteins. This family also contains a well-conserved putative zinc finger domain (TIGR01623). The rest of the sequence of most members consists of highly divergent, low-complexity sequence. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=81.99 E-value=27 Score=36.93 Aligned_cols=149 Identities=13% Similarity=0.083 Sum_probs=83.6
Q ss_pred CEEEEEccccCCC--Cccc-ceEEEEecCCC-----ceeeccccCCCCCCCCcceeeeecCEEEEEeccCCCCccCeEEE
Q 006334 139 DKMVIFGGSGEGE--ANYL-NDLHVLDLKTM-----RWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDM 210 (650)
Q Consensus 139 ~~Lyv~GG~~~~~--~~~~-~dv~~yd~~t~-----~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~ 210 (650)
..++++|-.-... .... ..+..|++.+. ++..+. .....-.-.+++.+++++++.-| +.++.
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~---~~~~~g~V~ai~~~~~~lv~~~g-------~~l~v 111 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIH---STEVKGPVTAICSFNGRLVVAVG-------NKLYV 111 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEE---EEEESS-EEEEEEETTEEEEEET-------TEEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEE---EEeecCcceEhhhhCCEEEEeec-------CEEEE
Confidence 4666666542111 1122 67889998874 455433 22223334566677888777766 68888
Q ss_pred EECCCCc-EEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCe--EEEEECCCCcEEEeecCCCCCCCcceeEEE
Q 006334 211 LDMNSLT-WSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYND--IWILNVSTCSWSQLDTCGQQPQGRFSHAAV 287 (650)
Q Consensus 211 yd~~t~~-W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~d--v~~yD~~t~~W~~l~~~~~~p~~R~~hsav 287 (650)
|++...+ |...... ..+-...++.+.++.|++- - .... ++.|+.+..+-..+.. ...++.-.++.
T Consensus 112 ~~l~~~~~l~~~~~~---~~~~~i~sl~~~~~~I~vg-D-----~~~sv~~~~~~~~~~~l~~va~---d~~~~~v~~~~ 179 (321)
T PF03178_consen 112 YDLDNSKTLLKKAFY---DSPFYITSLSVFKNYILVG-D-----AMKSVSLLRYDEENNKLILVAR---DYQPRWVTAAE 179 (321)
T ss_dssp EEEETTSSEEEEEEE----BSSSEEEEEEETTEEEEE-E-----SSSSEEEEEEETTTE-EEEEEE---ESS-BEEEEEE
T ss_pred EEccCcccchhhhee---cceEEEEEEeccccEEEEE-E-----cccCEEEEEEEccCCEEEEEEe---cCCCccEEEEE
Confidence 8888887 8887743 2333556666777755544 2 2333 4566776666777664 34456666666
Q ss_pred EE-CCeEEEEcCCCCCCCCCCcEEEEecC
Q 006334 288 VT-GSDIVIYGGCGEDERPLNELLVLQLG 315 (650)
Q Consensus 288 ~~-~~~lyV~GG~~~~~~~~~d~~~l~l~ 315 (650)
++ ++. .++++-. ...++.+...
T Consensus 180 ~l~d~~-~~i~~D~-----~gnl~~l~~~ 202 (321)
T PF03178_consen 180 FLVDED-TIIVGDK-----DGNLFVLRYN 202 (321)
T ss_dssp EE-SSS-EEEEEET-----TSEEEEEEE-
T ss_pred EecCCc-EEEEEcC-----CCeEEEEEEC
Confidence 66 655 4444422 2456666654
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=81.85 E-value=79 Score=33.92 Aligned_cols=244 Identities=14% Similarity=0.176 Sum_probs=112.9
Q ss_pred EEccCCCCcccceE--EEEECCCCcEEEeecCCCCCCCCcceEEEE--ECCEEEEEcccCCCcCcCeEEEE--ECCCCcE
Q 006334 42 IFGGCCGGLHFGDV--LMLNLDTMVWSTLATTGQGPGPRDSHSAIL--WGHKMIVFGGTNGYKKVNDLHIL--DLESKEW 115 (650)
Q Consensus 42 vfGG~~~~~~~~dv--~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~--~~~~lyVfGG~~~~~~~ndv~~y--D~~t~~W 115 (650)
++|++.. .....+ +.||..+.+++.+........| .-+++ .++.||+..... .....+..| +..+.+.
T Consensus 3 ~vgsy~~-~~~~gI~~~~~d~~~g~l~~~~~~~~~~~P---s~l~~~~~~~~LY~~~e~~--~~~g~v~~~~i~~~~g~L 76 (345)
T PF10282_consen 3 YVGSYTN-GKGGGIYVFRFDEETGTLTLVQTVAEGENP---SWLAVSPDGRRLYVVNEGS--GDSGGVSSYRIDPDTGTL 76 (345)
T ss_dssp EEEECCS-SSSTEEEEEEEETTTTEEEEEEEEEESSSE---CCEEE-TTSSEEEEEETTS--STTTEEEEEEEETTTTEE
T ss_pred EEEcCCC-CCCCcEEEEEEcCCCCCceEeeeecCCCCC---ceEEEEeCCCEEEEEEccc--cCCCCEEEEEECCCccee
Confidence 3455543 222344 5556789999887643111111 12233 356788875543 122344444 4444677
Q ss_pred EeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCC-ceeecc------ccCCC---CCCCCcce
Q 006334 116 MRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTM-RWASPA------VKGDI---PVPRDSHS 185 (650)
Q Consensus 116 ~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~-~Wt~i~------~~~~l---P~~R~~hs 185 (650)
+.+..... ....-+| .++..+++.+++.-+. -..+.+|++..+ .-.... ..++. ...-.-|.
T Consensus 77 ~~~~~~~~-~g~~p~~-i~~~~~g~~l~vany~------~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~ 148 (345)
T PF10282_consen 77 TLLNSVPS-GGSSPCH-IAVDPDGRFLYVANYG------GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQ 148 (345)
T ss_dssp EEEEEEEE-SSSCEEE-EEECTTSSEEEEEETT------TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEE
T ss_pred EEeeeecc-CCCCcEE-EEEecCCCEEEEEEcc------CCeEEEEEccCCcccceeeeecccCCCCCccccccccccee
Confidence 77632211 1112233 2222344444433332 235777777653 222110 01111 12233455
Q ss_pred eeee--cCEEEEEeccCCCCccCeEEEEECCCCc--EEEeeecCCCCCcccceEEEEEC-CEEEEEeccCCCcccCeEEE
Q 006334 186 SNVI--ANRLFVYGGDCGDQYHGDIDMLDMNSLT--WSRLAIIGSSPGVRAGHAAINIG-TKVYIIGGVGDKHYYNDIWI 260 (650)
Q Consensus 186 ~v~~--~~~Iyv~GG~~~~~~~n~v~~yd~~t~~--W~~i~~~g~~P~~R~~~s~v~~~-~~IyI~GG~~~~~~~~dv~~ 260 (650)
+... ++.+|+..= -.+.++.|+.+... ..........+..--.|.+..-+ ..+||..- ..+.+.+
T Consensus 149 v~~~pdg~~v~v~dl-----G~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e-----~s~~v~v 218 (345)
T PF10282_consen 149 VVFSPDGRFVYVPDL-----GADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNE-----LSNTVSV 218 (345)
T ss_dssp EEE-TTSSEEEEEET-----TTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEET-----TTTEEEE
T ss_pred EEECCCCCEEEEEec-----CCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecC-----CCCcEEE
Confidence 5555 245776531 13678888887665 65543321122212223333333 47889854 3455666
Q ss_pred EECC--CCcEEEeecCCCCC---CCc-ceeEEEEE-C-CeEEEEcCCCCCCCCCCcEEEEecC
Q 006334 261 LNVS--TCSWSQLDTCGQQP---QGR-FSHAAVVT-G-SDIVIYGGCGEDERPLNELLVLQLG 315 (650)
Q Consensus 261 yD~~--t~~W~~l~~~~~~p---~~R-~~hsav~~-~-~~lyV~GG~~~~~~~~~d~~~l~l~ 315 (650)
|++. +..|+.+......| ... ..+..++. + ..|||.-- ..+.+.+|+++
T Consensus 219 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr------~~~sI~vf~~d 275 (345)
T PF10282_consen 219 FDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR------GSNSISVFDLD 275 (345)
T ss_dssp EEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC------TTTEEEEEEEC
T ss_pred EeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEec------cCCEEEEEEEe
Confidence 6665 67777765432222 222 33334444 3 35777622 14677788874
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=81.42 E-value=94 Score=34.53 Aligned_cols=190 Identities=11% Similarity=0.067 Sum_probs=96.0
Q ss_pred ceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCE-EEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCccc
Q 006334 53 GDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHK-MIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESH 131 (650)
Q Consensus 53 ~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~-lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h 131 (650)
..+|++|+.+++-..+... +. ........-+++ |++.....+ ..++|.+|+.+.+.+++... .. ...
T Consensus 223 ~~i~i~dl~~G~~~~l~~~---~~-~~~~~~~SPDG~~La~~~~~~g---~~~I~~~d~~tg~~~~lt~~---~~--~~~ 290 (429)
T PRK03629 223 SALVIQTLANGAVRQVASF---PR-HNGAPAFSPDGSKLAFALSKTG---SLNLYVMDLASGQIRQVTDG---RS--NNT 290 (429)
T ss_pred cEEEEEECCCCCeEEccCC---CC-CcCCeEECCCCCEEEEEEcCCC---CcEEEEEECCCCCEEEccCC---CC--CcC
Confidence 5789999988776665433 11 111222233554 544332221 24699999999888776211 11 112
Q ss_pred EEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeeecCEEEEEeccCCCCccCeEEEE
Q 006334 132 TATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDML 211 (650)
Q Consensus 132 s~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~y 211 (650)
......+++.+++..... . ...+|.+|+.+.....+...+ .........-+++.+++.+.... ...++.+
T Consensus 291 ~~~wSPDG~~I~f~s~~~--g--~~~Iy~~d~~~g~~~~lt~~~----~~~~~~~~SpDG~~Ia~~~~~~g--~~~I~~~ 360 (429)
T PRK03629 291 EPTWFPDSQNLAYTSDQA--G--RPQVYKVNINGGAPQRITWEG----SQNQDADVSSDGKFMVMVSSNGG--QQHIAKQ 360 (429)
T ss_pred ceEECCCCCEEEEEeCCC--C--CceEEEEECCCCCeEEeecCC----CCccCEEECCCCCEEEEEEccCC--CceEEEE
Confidence 223334555444433211 1 247889998877666553111 11111111224444444332222 2478999
Q ss_pred ECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCcEEEe
Q 006334 212 DMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQL 271 (650)
Q Consensus 212 d~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l 271 (650)
|+.+..+..+.... ........-+++.+++.+.... ...++..++....=..+
T Consensus 361 dl~~g~~~~Lt~~~-----~~~~p~~SpDG~~i~~~s~~~~--~~~l~~~~~~G~~~~~l 413 (429)
T PRK03629 361 DLATGGVQVLTDTF-----LDETPSIAPNGTMVIYSSSQGM--GSVLNLVSTDGRFKARL 413 (429)
T ss_pred ECCCCCeEEeCCCC-----CCCCceECCCCCEEEEEEcCCC--ceEEEEEECCCCCeEEC
Confidence 99999988776211 1112233456677777655432 23566667654443333
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=81.29 E-value=79 Score=33.60 Aligned_cols=244 Identities=15% Similarity=0.181 Sum_probs=105.3
Q ss_pred cCCCeEEeeecCCCCCCCcceeEEEEECCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEE-ECC
Q 006334 10 KRAAMWLYPKVLGFNPPERWGHSACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAIL-WGH 88 (650)
Q Consensus 10 ~~~~~W~~~~~~g~~P~~R~ghs~v~~~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~-~~~ 88 (650)
.--..|.........+....-.++.+.++..||.|-. .-+++-.-.-.+|++++.... .|-..+.+.. -++
T Consensus 44 DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~------g~ll~T~DgG~tW~~v~l~~~--lpgs~~~i~~l~~~ 115 (302)
T PF14870_consen 44 DGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEP------GLLLHTTDGGKTWERVPLSSK--LPGSPFGITALGDG 115 (302)
T ss_dssp STTSS-EE-----S-----EEEEEEEETTEEEEEEET------TEEEEESSTTSS-EE----TT---SS-EEEEEEEETT
T ss_pred CCCccccccccCCCccceeeEEEEEecCCceEEEcCC------ceEEEecCCCCCcEEeecCCC--CCCCeeEEEEcCCC
Confidence 3345788765443333223334555678889988742 235555556788999864322 2333344444 466
Q ss_pred EEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCce
Q 006334 89 KMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRW 168 (650)
Q Consensus 89 ~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~W 168 (650)
.++++|.. ..+|+=.=.-.+|+.+... .......+....++.+++++-.+. -....|+-...|
T Consensus 116 ~~~l~~~~------G~iy~T~DgG~tW~~~~~~----~~gs~~~~~r~~dG~~vavs~~G~-------~~~s~~~G~~~w 178 (302)
T PF14870_consen 116 SAELAGDR------GAIYRTTDGGKTWQAVVSE----TSGSINDITRSSDGRYVAVSSRGN-------FYSSWDPGQTTW 178 (302)
T ss_dssp EEEEEETT--------EEEESSTTSSEEEEE-S--------EEEEEE-TTS-EEEEETTSS-------EEEEE-TT-SS-
T ss_pred cEEEEcCC------CcEEEeCCCCCCeeEcccC----CcceeEeEEECCCCcEEEEECccc-------EEEEecCCCccc
Confidence 77777643 2344444455689987321 112233334445678777765531 123456666779
Q ss_pred eeccccCCCCCCCCcceeeee-cCEEEEEeccCCCCccCeEEEEE--CCCCcEEEeeecCCCCCcccceE-EEEE-CCEE
Q 006334 169 ASPAVKGDIPVPRDSHSSNVI-ANRLFVYGGDCGDQYHGDIDMLD--MNSLTWSRLAIIGSSPGVRAGHA-AINI-GTKV 243 (650)
Q Consensus 169 t~i~~~~~lP~~R~~hs~v~~-~~~Iyv~GG~~~~~~~n~v~~yd--~~t~~W~~i~~~g~~P~~R~~~s-~v~~-~~~I 243 (650)
.... .+..|.--++... ++.++++. .. ..+..=+ ....+|.+... +.....++.. ++.. ++.+
T Consensus 179 ~~~~----r~~~~riq~~gf~~~~~lw~~~-~G-----g~~~~s~~~~~~~~w~~~~~--~~~~~~~~~ld~a~~~~~~~ 246 (302)
T PF14870_consen 179 QPHN----RNSSRRIQSMGFSPDGNLWMLA-RG-----GQIQFSDDPDDGETWSEPII--PIKTNGYGILDLAYRPPNEI 246 (302)
T ss_dssp EEEE------SSS-EEEEEE-TTS-EEEEE-TT-----TEEEEEE-TTEEEEE---B---TTSS--S-EEEEEESSSS-E
T ss_pred eEEc----cCccceehhceecCCCCEEEEe-CC-----cEEEEccCCCCccccccccC--CcccCceeeEEEEecCCCCE
Confidence 8755 2233333344333 45666654 11 1333333 33456777331 2223334333 3333 3689
Q ss_pred EEEeccCCCcccCeEEEEECCCCcEEEeecCCCCCCCcceeEEEEE-CCeEEEEcC
Q 006334 244 YIIGGVGDKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVT-GSDIVIYGG 298 (650)
Q Consensus 244 yI~GG~~~~~~~~dv~~yD~~t~~W~~l~~~~~~p~~R~~hsav~~-~~~lyV~GG 298 (650)
++.||.. .+++=.-.-++|++.......| -.....++. .++-+|+|-
T Consensus 247 wa~gg~G------~l~~S~DgGktW~~~~~~~~~~--~n~~~i~f~~~~~gf~lG~ 294 (302)
T PF14870_consen 247 WAVGGSG------TLLVSTDGGKTWQKDRVGENVP--SNLYRIVFVNPDKGFVLGQ 294 (302)
T ss_dssp EEEESTT-------EEEESSTTSS-EE-GGGTTSS--S---EEEEEETTEEEEE-S
T ss_pred EEEeCCc------cEEEeCCCCccceECccccCCC--CceEEEEEcCCCceEEECC
Confidence 9998853 3444445567899987532223 223344444 568899875
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=80.01 E-value=1.5e+02 Score=35.86 Aligned_cols=140 Identities=6% Similarity=0.131 Sum_probs=68.5
Q ss_pred CEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEE-cCCEEEEEccccCCCCcccceEEEEecCCC
Q 006334 88 HKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLV-GDDKMVIFGGSGEGEANYLNDLHVLDLKTM 166 (650)
Q Consensus 88 ~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~-~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~ 166 (650)
+.+++.|+.++ .+.++|..+.+.... .. . ....-.++... .++.+++.||.+ ..+.+||+.+.
T Consensus 545 ~~~las~~~Dg-----~v~lWd~~~~~~~~~-~~-~--H~~~V~~l~~~p~~~~~L~Sgs~D-------g~v~iWd~~~~ 608 (793)
T PLN00181 545 KSQVASSNFEG-----VVQVWDVARSQLVTE-MK-E--HEKRVWSIDYSSADPTLLASGSDD-------GSVKLWSINQG 608 (793)
T ss_pred CCEEEEEeCCC-----eEEEEECCCCeEEEE-ec-C--CCCCEEEEEEcCCCCCEEEEEcCC-------CEEEEEECCCC
Confidence 45566666543 577788876643321 01 1 11112233332 246778888763 24778887654
Q ss_pred cee-eccccCCCCCCCCcceeeee---cCEEEEEeccCCCCccCeEEEEECCCCc--EEEeeecCCCCCcccceEEEEEC
Q 006334 167 RWA-SPAVKGDIPVPRDSHSSNVI---ANRLFVYGGDCGDQYHGDIDMLDMNSLT--WSRLAIIGSSPGVRAGHAAINIG 240 (650)
Q Consensus 167 ~Wt-~i~~~~~lP~~R~~hs~v~~---~~~Iyv~GG~~~~~~~n~v~~yd~~t~~--W~~i~~~g~~P~~R~~~s~v~~~ 240 (650)
.-. .+. . .....++.+ ++.+++.|+.+ +.+..||+.+.. ...+.. . . -.-..+...+
T Consensus 609 ~~~~~~~---~----~~~v~~v~~~~~~g~~latgs~d-----g~I~iwD~~~~~~~~~~~~~--h-~--~~V~~v~f~~ 671 (793)
T PLN00181 609 VSIGTIK---T----KANICCVQFPSESGRSLAFGSAD-----HKVYYYDLRNPKLPLCTMIG--H-S--KTVSYVRFVD 671 (793)
T ss_pred cEEEEEe---c----CCCeEEEEEeCCCCCEEEEEeCC-----CeEEEEECCCCCccceEecC--C-C--CCEEEEEEeC
Confidence 322 111 0 111122222 36677777755 478899987543 222210 0 0 0111222235
Q ss_pred CEEEEEeccCCCcccCeEEEEECCC
Q 006334 241 TKVYIIGGVGDKHYYNDIWILNVST 265 (650)
Q Consensus 241 ~~IyI~GG~~~~~~~~dv~~yD~~t 265 (650)
+..++.|+.++ .+.+||+..
T Consensus 672 ~~~lvs~s~D~-----~ikiWd~~~ 691 (793)
T PLN00181 672 SSTLVSSSTDN-----TLKLWDLSM 691 (793)
T ss_pred CCEEEEEECCC-----EEEEEeCCC
Confidence 56666666432 477777764
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 650 | ||||
| 2xn4_A | 302 | Crystal Structure Of The Kelch Domain Of Human Klhl | 7e-04 |
| >pdb|2XN4|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl2 (mayven) Length = 302 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695 | Back alignment and structure |
|---|
Score = 187 bits (475), Expect = 6e-51
Identities = 55/366 (15%), Positives = 110/366 (30%), Gaps = 60/366 (16%)
Query: 23 FNPPERWG----HSACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPR 78
F+ E + H F G L + +NL L + P R
Sbjct: 330 FDELEEFHLFCHHYVLCHATNYKEFAFTQGFLFDRSISEINLTVDEDYQL-LECECPINR 388
Query: 79 DSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECR---GAPPSPRESHTATL 135
+ G+ + GG+N Y+ VN++ L + + P R HT T
Sbjct: 389 KFGDVDVAGNDVFYMGGSNPYR-VNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTT 447
Query: 136 VG-DDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIAN-RL 193
+ ++++++ GG + L+D + D+KT W+ + R HS+ + + +
Sbjct: 448 ISRNNQLLLIGG-RKAPHQGLSDNWIFDMKTREWSMI---KSLSHTRFRHSACSLPDGNV 503
Query: 194 FVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGT----KVYIIGGV 249
+ GG + + ++ + + A + + + GG
Sbjct: 504 LILGGVTEG---PAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGF 560
Query: 250 GDKHYYND---IWILNVS--TCSWSQLDTCGQQPQGRFSHAAVVTGSD-IVIYGGCGEDE 303
D+ +D I+ + T + + R+ ++I GG
Sbjct: 561 MDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSG 620
Query: 304 R--PLNELLVLQLG--------------AEHPNYRYNISMCKI----------------F 331
N ++ L +H S+ F
Sbjct: 621 LFDRTNSIISLDPLSETLTSIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGGATCYGF 680
Query: 332 GNHWNQ 337
G+ N
Sbjct: 681 GSVTNV 686
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695 | Back alignment and structure |
|---|
Score = 63.2 bits (153), Expect = 1e-10
Identities = 13/90 (14%), Positives = 29/90 (32%), Gaps = 9/90 (10%)
Query: 15 WLYPKVLGFNPPERWGHSACY-SHGAVYIFGGCCGGLHFG---DVLMLNLDTMVWSTLAT 70
K L +R+G Y + + I GG F ++ L+ + +++
Sbjct: 584 ITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTSIPI 643
Query: 71 TGQGPGPRD----SHSAILWG-HKMIVFGG 95
+ + S + + + GG
Sbjct: 644 SRRIWEDHSLMLAGFSLVSTSMGTIHIIGG 673
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 1e-33
Identities = 52/265 (19%), Positives = 92/265 (34%), Gaps = 17/265 (6%)
Query: 25 PPERWGHSACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAI 84
P R Y G V+ GG G L V + W+++A R + A
Sbjct: 49 PSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRD---RRSTLGAA 105
Query: 85 LWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAP-PSPRESHTATLVGDDKMVI 143
+ + GG +G ++ + +++S EW AP + R S +V +
Sbjct: 106 VLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWF----HVAPMNTRRSSVGVGVV-GGLLYA 160
Query: 144 FGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQ 203
GG L+ + + T W A ++ R V+ N L+ GG G
Sbjct: 161 VGGYDVASRQCLSTVECYNATTNEWTYIA---EMSTRRSGAGVGVLNNLLYAVGGHDGPL 217
Query: 204 YHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNV 263
+++ D + W ++A R + +Y++GG + N
Sbjct: 218 VRKSVEVYDPTTNAWRQVA---DMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNP 274
Query: 264 STCSWSQLDTCGQQPQGRFSHAAVV 288
+T W+ + +C GR V
Sbjct: 275 TTDKWTVVSSC--MSTGRSYAGVTV 297
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 2e-29
Identities = 42/282 (14%), Positives = 83/282 (29%), Gaps = 23/282 (8%)
Query: 26 PERWGHSACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAIL 85
+ + + GG V + W +A P R +
Sbjct: 4 VRTRLRTPMNLPKLMVVVGGQ-APKAIRSVECYDFKEERWHQVAEL---PSRRCRAGMVY 59
Query: 86 WGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAP-PSPRESHTATLVGDDKMVIF 144
+ GG NG +V + D +W A R + A ++ + +
Sbjct: 60 MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTS----VANMRDRRSTLGAAVL-NGLLYAV 114
Query: 145 GGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGG--DCGD 202
GG L+ + ++K+ W A + R S V+ L+ GG
Sbjct: 115 GGFDGS--TGLSSVEAYNIKSNEWFHVA---PMNTRRSSVGVGVVGGLLYAVGGYDVASR 169
Query: 203 QYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILN 262
Q ++ + + W+ +A R+G + +Y +GG + + +
Sbjct: 170 QCLSTVECYNATTNEWTYIA---EMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYD 226
Query: 263 VSTCSWSQLDTCGQQPQGRFSHAAVVTGSDIVIYGGCGEDER 304
+T +W R + + + GG
Sbjct: 227 PTTNAWR---QVADMNMCRRNAGVCAVNGLLYVVGGDDGSCN 265
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 7e-19
Identities = 36/183 (19%), Positives = 59/183 (32%), Gaps = 13/183 (7%)
Query: 126 SPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHS 185
S R + MV+ GG + + D K RW A ++P R
Sbjct: 3 SVRTRLRTPMNLPKLMVVVGGQAP---KAIRSVECYDFKEERWHQVA---ELPSRRCRAG 56
Query: 186 SNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYI 245
+A +F GG G +D D W+ +A + R+ A + +Y
Sbjct: 57 MVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA---NMRDRRSTLGAAVLNGLLYA 113
Query: 246 IGGVGDKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVTGSDIVIYGGC-GEDER 304
+GG + + N+ + W R S V G + GG +
Sbjct: 114 VGGFDGSTGLSSVEAYNIKSNEWF---HVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQ 170
Query: 305 PLN 307
L+
Sbjct: 171 CLS 173
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 1e-18
Identities = 37/219 (16%), Positives = 73/219 (33%), Gaps = 18/219 (8%)
Query: 28 RWGHSACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWG 87
R A +G +Y GG G V N+ + W +A R S + G
Sbjct: 99 RSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPM---NTRRSSVGVGVVG 155
Query: 88 HKMIVFGGTNG--YKKVNDLHILDLESKEW-MRPECRGAPPSPRESHTATLVGDDKMVIF 144
+ GG + + ++ + + + EW E + R ++ ++ +
Sbjct: 156 GLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEM----STRRSGAGVGVL-NNLLYAV 210
Query: 145 GGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQY 204
GG + V D T W D+ + R + + L+V GGD G
Sbjct: 211 GGHDG--PLVRKSVEVYDPTTNAWRQ---VADMNMCRRNAGVCAVNGLLYVVGGDDGSCN 265
Query: 205 HGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKV 243
++ + + W+ ++ R+ I ++
Sbjct: 266 LASVEYYNPTTDKWTVVS--SCMSTGRSYAGVTVIDKRL 302
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 2e-32
Identities = 47/268 (17%), Positives = 86/268 (32%), Gaps = 23/268 (8%)
Query: 25 PPERWGHSACYSHGAVYIFGGCCGGLHFGDVLMLNLDT---MVWSTLATTGQGPGPRDSH 81
+R ++ H +Y+ GG G V L+ VW ++A R
Sbjct: 50 TRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNV---RRGLA 106
Query: 82 SAILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAP-PSPRESHTATLVGDDK 140
A G + V GG +G ++ + D +W + RE +
Sbjct: 107 GATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSM----LGDMQTAREGAGLVVA-SGV 161
Query: 141 MVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDC 200
+ GG N LN + D T W + + R ++ + ++V GG
Sbjct: 162 IYCLGGYDGL--NILNSVEKYDPHTGHWTNVT---PMATKRSGAGVALLNDHIYVVGGFD 216
Query: 201 GDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWI 260
G + ++ ++ + +W+ + S R A + ++Y I G + I
Sbjct: 217 GTAHLSSVEAYNIRTDSWTTVT---SMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIEC 273
Query: 261 LNVSTCSWSQLDTCGQQPQGRFSHAAVV 288
+ SW R V
Sbjct: 274 YDPIIDSWE---VVTSMGTQRCDAGVCV 298
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 6e-30
Identities = 49/279 (17%), Positives = 97/279 (34%), Gaps = 24/279 (8%)
Query: 31 HSACYSHGAVYIFGGCCG-GLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHK 89
+ ++ + + GG V + T WS L + R +++ +
Sbjct: 8 RARLGANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSI---TRKRRYVASVSLHDR 64
Query: 90 MIVFGGTNGYKKVNDLHILDLESKE---WMRPECRGAP-PSPRESHTATLVGDDKMVIFG 145
+ V GG +G +++ + LD + E W AP R AT + D + + G
Sbjct: 65 IYVIGGYDGRSRLSSVECLDYTADEDGVWYS----VAPMNVRRGLAGATTL-GDMIYVSG 119
Query: 146 GSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQYH 205
G + + D +W+ GD+ R+ V + ++ GG G
Sbjct: 120 GFDG--SRRHTSMERYDPNIDQWSM---LGDMQTAREGAGLVVASGVIYCLGGYDGLNIL 174
Query: 206 GDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVST 265
++ D ++ W+ + R+G + +Y++GG + + + N+ T
Sbjct: 175 NSVEKYDPHTGHWTNVT---PMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRT 231
Query: 266 CSWSQLDTCGQQPQGRFSHAAVVTGSDIVIYGGCGEDER 304
SW+ T R A V + G +
Sbjct: 232 DSWT---TVTSMTTPRCYVGATVLRGRLYAIAGYDGNSL 267
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301 | Back alignment and structure |
|---|
Score = 97.4 bits (243), Expect = 2e-22
Identities = 40/232 (17%), Positives = 79/232 (34%), Gaps = 16/232 (6%)
Query: 75 PGPRDSHSAILWGHKMIVFGGTNGYKK-VNDLHILDLESKEWMRPECRGAP-PSPRESHT 132
GPR + + + ++V GG + ++ + D +++EW R
Sbjct: 3 QGPR-TRARLGANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSF----LPSITRKRRYVA 57
Query: 133 ATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANR 192
+ + D++ + GG + L+ + LD + V R + + +
Sbjct: 58 SVSL-HDRIYVIGGYDGR--SRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDM 114
Query: 193 LFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDK 252
++V GG G + H ++ D N WS L R G + +Y +GG
Sbjct: 115 IYVSGGFDGSRRHTSMERYDPNIDQWSMLG---DMQTAREGAGLVVASGVIYCLGGYDGL 171
Query: 253 HYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVTGSDIVIYGGCGEDER 304
+ N + + T W+ + R + I + GG
Sbjct: 172 NILNSVEKYDPHTGHWTNVTPM---ATKRSGAGVALLNDHIYVVGGFDGTAH 220
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 4e-32
Identities = 52/270 (19%), Positives = 90/270 (33%), Gaps = 24/270 (8%)
Query: 25 PPERWGHSACYSHGAVYIFGGCC----GGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDS 80
R G + C G +Y GG G + N T WS A PR+
Sbjct: 58 QVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSV---PRNR 114
Query: 81 HSAILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAP-PSPRESHTATLVGDD 139
+ + GG++G N + + E EW AP + R ++ +
Sbjct: 115 IGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHL----VAPMLTRRIGVGVAVL-NR 169
Query: 140 KMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGD 199
+ GG N LN + W + R V+ N ++ GG
Sbjct: 170 LLYAVGGFDGT--NRLNSAECYYPERNEWRMIT---AMNTIRSGAGVCVLHNCIYAAGGY 224
Query: 200 CGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIW 259
G ++ D+ + TW+ +A R+ ++Y++GG + + +
Sbjct: 225 DGQDQLNSVERYDVETETWTFVA---PMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVE 281
Query: 260 ILNVSTCSWSQLDTCGQQPQGRFSHAAVVT 289
+ T +WS++ GR VT
Sbjct: 282 CYDPDTDTWSEVTRM---TSGRSGVGVAVT 308
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 8e-29
Identities = 50/277 (18%), Positives = 83/277 (29%), Gaps = 25/277 (9%)
Query: 30 GHSACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHK 89
G A +Y GG + N W LA PR + + G
Sbjct: 17 GSHAPKVGRLIYTAGGYFRQ-SLSYLEAYNPSNGTWLRLADL---QVPRSGLAGCVVGGL 72
Query: 90 MIVFGGTN----GYKKVNDLHILDLESKEWMRPECRGAP-PSPRESHTATLVGDDKMVIF 144
+ GG N G + L + + +W AP PR ++ D +
Sbjct: 73 LYAVGGRNNSPDGNTDSSALDCYNPMTNQWSP----CAPMSVPRNRIGVGVI-DGHIYAV 127
Query: 145 GGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQY 204
GGS + N + + + W A + R V+ L+ GG G
Sbjct: 128 GGSHGC--IHHNSVERYEPERDEWHLVA---PMLTRRIGVGVAVLNRLLYAVGGFDGTNR 182
Query: 205 HGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVS 264
+ W + + +R+G + +Y GG + N + +V
Sbjct: 183 LNSAECYYPERNEWRMIT---AMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVE 239
Query: 265 TCSWSQLDTCGQQPQGRFSHAAVVTGSDIVIYGGCGE 301
T +W+ R + V I + GG
Sbjct: 240 TETWT---FVAPMKHRRSALGITVHQGRIYVLGGYDG 273
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 7e-25
Identities = 43/231 (18%), Positives = 74/231 (32%), Gaps = 19/231 (8%)
Query: 77 PRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAP-PSPRESHTATL 135
PR SH+ + G + GG + ++ L + + W+R A PR +
Sbjct: 15 PRGSHAPKV-GRLIYTAGGYFR-QSLSYLEAYNPSNGTWLR----LADLQVPRSGLAGCV 68
Query: 136 VGDDKMVIFGGSGEGE--ANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRL 193
V + GG + L + T +W+ A + VPR+ VI +
Sbjct: 69 V-GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCA---PMSVPRNRIGVGVIDGHI 124
Query: 194 FVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKH 253
+ GG G +H ++ + W +A R G + +Y +GG +
Sbjct: 125 YAVGGSHGCIHHNSVERYEPERDEWHLVA---PMLTRRIGVGVAVLNRLLYAVGGFDGTN 181
Query: 254 YYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVTGSDIVIYGGCGEDER 304
N W R V + I GG ++
Sbjct: 182 RLNSAECYYPERNEWR---MITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQ 229
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308 | Back alignment and structure |
|---|
Score = 85.5 bits (212), Expect = 2e-18
Identities = 35/186 (18%), Positives = 54/186 (29%), Gaps = 18/186 (9%)
Query: 123 APPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRD 182
+ PR SH + + GG L+ L + W A D+ VPR
Sbjct: 11 SGLVPRGSHAPKV--GRLIYTAGGYFR---QSLSYLEAYNPSNGTWLRLA---DLQVPRS 62
Query: 183 SHSSNVIANRLFVYGG----DCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAIN 238
+ V+ L+ GG G+ +D + + WS A R
Sbjct: 63 GLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCA---PMSVPRNRIGVGV 119
Query: 239 IGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVTGSDIVIYGG 298
I +Y +GG ++N + W R V + GG
Sbjct: 120 IDGHIYAVGGSHGCIHHNSVERYEPERDEWH---LVAPMLTRRIGVGVAVLNRLLYAVGG 176
Query: 299 CGEDER 304
R
Sbjct: 177 FDGTNR 182
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 2e-31
Identities = 50/283 (17%), Positives = 87/283 (30%), Gaps = 27/283 (9%)
Query: 25 PPERWGHSACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAI 84
+R + + VYI GG + N+ W + PRDS +A
Sbjct: 43 FEKRRDAACVFWDNVVYILGGS-QLFPIKRMDCYNVVKDSWYSKLGPPT---PRDSLAAC 98
Query: 85 LWGHKMIVFGGTN-GYKKVNDLHILDLESKEWMRPECRGAP-PSPRESHTATLVGDDKMV 142
K+ GG+ G + D ++ W + R SH + +
Sbjct: 99 AAEGKIYTSGGSEVGNSALYLFECYDTRTESWHT----KPSMLTQRCSHGMVEA-NGLIY 153
Query: 143 IFGGSGEGEAN--YLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDC 200
+ GGS + LN V D T W + R +H + +++F GG
Sbjct: 154 VCGGSLGNNVSGRVLNSCEVYDPATETWTELC---PMIEARKNHGLVFVKDKIFAVGGQN 210
Query: 201 GDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWI 260
G +++ D+ W ++ P +G+ VY++ G I
Sbjct: 211 GLGGLDNVEYYDIKLNEWKMVS---PMPWKGVTVKCAAVGSIVYVLAGFQGVGRLGHILE 267
Query: 261 LNVSTCSWSQLDTCGQQPQGRFSHAAVVTGSDIVIYGGCGEDE 303
N T W + + V+ +E
Sbjct: 268 YNTETDKWVANSKV---RAFPVTSCLIC-----VVDTCGANEE 302
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 1e-28
Identities = 48/276 (17%), Positives = 91/276 (32%), Gaps = 28/276 (10%)
Query: 34 CYSHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVF 93
+ +FGG N W+ + R + + W + + +
Sbjct: 9 KKHDYRIALFGGS----QPQSCRYFNPKDYSWTDIRCP---FEKRRDAACVFWDNVVYIL 61
Query: 94 GGTNGYKKVNDLHILDLESKEWMRPECRGAP-PSPRESHTATLVGDDKMVIFGGSGEGEA 152
GG+ + + ++ W P+PR+S A + K+ GGS G
Sbjct: 62 GGSQL-FPIKRMDCYNVVKDSWYS----KLGPPTPRDSLAACAA-EGKIYTSGGSEVGN- 114
Query: 153 NYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDI---- 208
+ L D +T W + K + R SH ++V GG G+ G +
Sbjct: 115 SALYLFECYDTRTESWHT---KPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSC 171
Query: 209 DMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCSW 268
++ D + TW+ L R H + + K++ +GG +++ ++ W
Sbjct: 172 EVYDPATETWTELC---PMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEW 228
Query: 269 SQLDTCGQQPQGRFSHAAVVTGSDIVIYGGCGEDER 304
P + GS + + G R
Sbjct: 229 K---MVSPMPWKGVTVKCAAVGSIVYVLAGFQGVGR 261
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 1e-15
Identities = 35/184 (19%), Positives = 51/184 (27%), Gaps = 22/184 (11%)
Query: 127 PRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSS 186
PR D ++ +FGGS + K W R +
Sbjct: 6 PRRKK-----HDYRIALFGGS------QPQSCRYFNPKDYSWTDIR---CPFEKRRDAAC 51
Query: 187 NVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYII 246
N +++ GG +D ++ +W P R AA K+Y
Sbjct: 52 VFWDNVVYILGG-SQLFPIKRMDCYNVVKDSWYSKL---GPPTPRDSLAACAAEGKIYTS 107
Query: 247 GGVGD-KHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVTGSDIVIYGGCGEDERP 305
GG + T SW T R SH V I + GG +
Sbjct: 108 GGSEVGNSALYLFECYDTRTESWH---TKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVS 164
Query: 306 LNEL 309
L
Sbjct: 165 GRVL 168
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 6e-31
Identities = 61/352 (17%), Positives = 108/352 (30%), Gaps = 80/352 (22%)
Query: 25 PPERWGHSACYSHGAVYIFGGCCGGLHFGDVLMLNLDTM--VWSTLATTGQGPGPRDSHS 82
P + + VYI G G L+ W+ LA GPRD +
Sbjct: 7 PVPFKSGTGAIDNDTVYIGLGSAGT----AWYKLDTQAKDKKWTALAAFP--GGPRDQAT 60
Query: 83 AILWGHKMIVFGGTN-----GYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVG 137
+ + VFGG + ND+H + ++ W++ P H V
Sbjct: 61 SAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVK--LMSHAPMGMAGHVTF-VH 117
Query: 138 DDKMVIFGGSGEGEAN--------------------------------YLNDLHVLDLKT 165
+ K + GG + N + L D T
Sbjct: 118 NGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPST 177
Query: 166 MRWASPAVKGDIP-VPRDSHSSNVIANRLFVYGG-DCGDQYHGDIDMLDMNS--LTWSRL 221
+W+ G+ P + ++ ++ G + LD L W++L
Sbjct: 178 QQWSY---AGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKL 234
Query: 222 AIIGSSPGVRAGHAAINIGTKVYIIG-------------------GVGDKHYYNDIWILN 262
A + SSP AG A + G K Y DI + +
Sbjct: 235 APV-SSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWH 293
Query: 263 VSTCSWSQLDTCGQQPQGRFSHAAVVTGSDIVIYGGCGEDERPLNELLVLQL 314
W + G+ QGR ++ + ++I GG + + + +++ +
Sbjct: 294 --NGKWDKS---GELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLITV 340
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357 | Back alignment and structure |
|---|
Score = 93.9 bits (233), Expect = 7e-21
Identities = 39/266 (14%), Positives = 68/266 (25%), Gaps = 42/266 (15%)
Query: 19 KVLGFNPPERWGHSACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPR 78
K++ P GH +G Y+ GG + G LN + +
Sbjct: 100 KLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKIN------ 153
Query: 79 DSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGD 138
Y L D +++W G P + A +
Sbjct: 154 ----------AHYFDKKAEDYFFNKFLLSFDPSTQQW---SYAGESPWYGTAGAAVVNKG 200
Query: 139 DKMVIFGGSGEGEANYLNDLHVLDLKTMRWA-SPAVKGDIPVPRDSHSSNVIANRLFVYG 197
DK + G + + LD + P + + + L G
Sbjct: 201 DKTWLINGEA-KPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAG 259
Query: 198 G-----------------DCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIG 240
G G + D+ ++ W + G RA ++
Sbjct: 260 GAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDK---SGELSQGRAYGVSLPWN 316
Query: 241 TKVYIIGGVGDK-HYYNDIWILNVST 265
+ IIGG D ++ V
Sbjct: 317 NSLLIIGGETAGGKAVTDSVLITVKD 342
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357 | Back alignment and structure |
|---|
Score = 86.5 bits (214), Expect = 2e-18
Identities = 30/134 (22%), Positives = 51/134 (38%), Gaps = 11/134 (8%)
Query: 176 DIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHA 235
+ PVP S + + + +++ G G ++ +D W+ LA P R
Sbjct: 5 ETPVPFKSGTGAIDNDTVYIGLGSAGTAWY-KLD-TQAKDKKWTALAAFPGGP--RDQAT 60
Query: 236 AINIGTKVYIIGGV-----GDKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVTG 290
+ I +Y+ GG+ G +ND+ N T SW +L P G H V
Sbjct: 61 SAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKL--MSHAPMGMAGHVTFVHN 118
Query: 291 SDIVIYGGCGEDER 304
+ GG ++
Sbjct: 119 GKAYVTGGVNQNIF 132
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 6e-06
Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 6/89 (6%)
Query: 223 IIGSSPGVRAGHAAINIGTKVYIIGG-VGDKHYYNDIWILNVSTCSWSQLDTCGQQPQGR 281
++ +P VYI G G Y D W+ L P R
Sbjct: 2 VLPETPVPFKSGTGAIDNDTVYIGLGSAGTAWYKLD---TQAKDKKWTALAAFPGGP--R 56
Query: 282 FSHAAVVTGSDIVIYGGCGEDERPLNELL 310
+ ++ ++GG G++ L ++
Sbjct: 57 DQATSAFIDGNLYVFGGIGKNSEGLTQVF 85
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 1e-27
Identities = 51/299 (17%), Positives = 88/299 (29%), Gaps = 39/299 (13%)
Query: 25 PPERWGHSACYSHGAVYIFGGCCGGLHFGD------VLMLNLDTMVWSTLATTGQGPGPR 78
+ S V++ GG + L + W + P PR
Sbjct: 33 QVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPL---PSPR 89
Query: 79 DSHSAILWGHKMIVFGG---TNGYKKVNDLHILDLESKEWMRPECRGAP-PSPRESHTAT 134
+ + V GG +G + ++ + D S +W P P HT
Sbjct: 90 CLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWG----ESDPLPYVVYGHTVL 145
Query: 135 LVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLF 194
D + + GG G LN + V D K W A + R + V R+
Sbjct: 146 -SHMDLVYVIGGKGSDR-KCLNKMCVYDPKKFEWKELA---PMQTARSLFGATVHDGRII 200
Query: 195 VYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKH- 253
V G ++ + W+ + P R+ + +++ +Y IGG
Sbjct: 201 VAAGVTDTGLTSSAEVYSITDNKWAPFE---AFPQERSSLSLVSLVGTLYAIGGFATLET 257
Query: 254 --------YYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVTGSDIVIYGGCGEDER 304
NDIW N W + + ++ A + + E
Sbjct: 258 ESGELVPTELNDIWRYNEEEKKWEGV-----LREIAYAAGATFLPVRLNVLRLTKMAEN 311
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315 | Back alignment and structure |
|---|
Score = 95.9 bits (239), Expect = 8e-22
Identities = 44/289 (15%), Positives = 90/289 (31%), Gaps = 32/289 (11%)
Query: 35 YSHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFG 94
+ +++ + + + + P++ S + +++ V G
Sbjct: 2 FLQDLIFMISEE-------GAVAYDPAANECYCASLSS--QVPKNHVSLVTKENQVFVAG 52
Query: 95 GTNGYK------KVNDLHILDLESKEWMRPECRGAP-PSPRESHTATLVGDDKMVIFGGS 147
G + D EW+ P PSPR + + + GG
Sbjct: 53 GLFYNEDNKEDPMSAYFLQFDHLDSEWLG----MPPLPSPRCLFGLGEA-LNSIYVVGGR 107
Query: 148 GEGE-ANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGG-DCGDQYH 205
+ L+ + D + +W +P H+ + ++V GG +
Sbjct: 108 EIKDGERCLDSVMCYDRLSFKWGESD---PLPYVVYGHTVLSHMDLVYVIGGKGSDRKCL 164
Query: 206 GDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVST 265
+ + D W LA R+ A ++ + GV D + + +++
Sbjct: 165 NKMCVYDPKKFEWKELA---PMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITD 221
Query: 266 CSWSQLDTCGQQPQGRFSHAAVVTGSDIVIYGGCGEDERPLNELLVLQL 314
W+ PQ R S + V + GG E EL+ +L
Sbjct: 222 NKWA---PFEAFPQERSSLSLVSLVGTLYAIGGFATLETESGELVPTEL 267
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 9e-11
Identities = 21/137 (15%), Positives = 39/137 (28%), Gaps = 18/137 (13%)
Query: 28 RWGHSACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWG 87
R A G + + G + ++ W+ P R S S +
Sbjct: 187 RSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAF---PQERSSLSLVSLV 243
Query: 88 HKMIVFGGTNGYKK---------VNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGD 138
+ GG + +ND+ + E K+W G + AT
Sbjct: 244 GTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKW-----EGVLREIAYAAGAT-FLP 297
Query: 139 DKMVIFGGSGEGEANYL 155
++ + + E Y
Sbjct: 298 VRLNVLRLTKMAENLYF 314
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 5e-26
Identities = 45/290 (15%), Positives = 87/290 (30%), Gaps = 38/290 (13%)
Query: 25 PPERWGHSACYSHGAVYIFGGCCGGLHFGD------VLMLNLDTMVWSTLATTGQGPGPR 78
R S VY+ GG D L+ + W L P R
Sbjct: 44 QIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPL---PSAR 100
Query: 79 DSHSAILWGHKMIVFGGTN--GYKKVNDLHILDLESKEWMRPECRGAP-PSPRESHTATL 135
K+ V G + ++ + D + +W P H
Sbjct: 101 CLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWS----EVKNLPIKVYGHNVI- 155
Query: 136 VGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFV 195
+ + GG + + N + + + K W A + PR + ++ +
Sbjct: 156 SHNGMIYCLGGKTDDK-KCTNRVFIYNPKKGDWKDLA---PMKTPRSMFGVAIHKGKIVI 211
Query: 196 YGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGG------- 248
GG D ++ D+ + W + P R+ + +++ +Y IGG
Sbjct: 212 AGGVTEDGLSASVEAFDLKTNKWEVMT---EFPQERSSISLVSLAGSLYAIGGFAMIQLE 268
Query: 249 --VGDKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVTGSDIVIY 296
NDIW W+ + + R++ A + + ++
Sbjct: 269 SKEFAPTEVNDIWKYEDDKKEWAGML-----KEIRYASGASCLATRLNLF 313
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318 | Back alignment and structure |
|---|
Score = 95.1 bits (237), Expect = 1e-21
Identities = 46/278 (16%), Positives = 86/278 (30%), Gaps = 31/278 (11%)
Query: 35 YSHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFG 94
+ + + + + A PR+ S + +++ V G
Sbjct: 13 FVKDLILLVNDTA-------AVAYDPMENECYLTALAE--QIPRNHSSIVTQQNQVYVVG 63
Query: 95 GTNGYKK------VNDLHILDLESKEWMRPECRGAP-PSPRESHTATLVGDDKMVIFGGS 147
G ++ + LD S EW+ P PS R V DDK+ + G
Sbjct: 64 GLYVDEENKDQPLQSYFFQLDNVSSEWVG----LPPLPSARCLFGLGEV-DDKIYVVAGK 118
Query: 148 GEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGG-DCGDQYHG 206
L+ + D +W+ ++P+ H+ ++ GG +
Sbjct: 119 DLQTEASLDSVLCYDPVAAKWSEVK---NLPIKVYGHNVISHNGMIYCLGGKTDDKKCTN 175
Query: 207 DIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTC 266
+ + + W LA R+ K+ I GGV + + ++ T
Sbjct: 176 RVFIYNPKKGDWKDLA---PMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTN 232
Query: 267 SWSQLDTCGQQPQGRFSHAAVVTGSDIVIYGGCGEDER 304
W + PQ R S + V + GG +
Sbjct: 233 KWE---VMTEFPQERSSISLVSLAGSLYAIGGFAMIQL 267
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318 | Back alignment and structure |
|---|
Score = 79.7 bits (197), Expect = 2e-16
Identities = 45/234 (19%), Positives = 74/234 (31%), Gaps = 29/234 (12%)
Query: 28 RWGHSACYSHGAVYIFGGC--CGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAIL 85
R +Y+ G VL + WS + P H+ I
Sbjct: 100 RCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNL---PIKVYGHNVIS 156
Query: 86 WGHKMIVFGG-TNGYKKVNDLHILDLESKEWMRPECRGAP-PSPRESHTATLVGDDKMVI 143
+ GG T+ K N + I + + +W AP +PR + K+VI
Sbjct: 157 HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDW----KDLAPMKTPRSMFGVAIH-KGKIVI 211
Query: 144 FGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQ 203
GG E + DLKT +W + P R S S +A L+ GG Q
Sbjct: 212 AGG--VTEDGLSASVEAFDLKTNKWEVMT---EFPQERSSISLVSLAGSLYAIGGFAMIQ 266
Query: 204 YHG---------DIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGG 248
DI + + W+ + +G + + ++ +
Sbjct: 267 LESKEFAPTEVNDIWKYEDDKKEWAGML---KEIRYASGASCLATRLNLFKLSK 317
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 2e-12
Identities = 31/182 (17%), Positives = 61/182 (33%), Gaps = 25/182 (13%)
Query: 138 DDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYG 197
D +++ + D A+ +PR+ S N+++V G
Sbjct: 15 KDLILLVNDTA---------AVAYDPMENECYLTAL--AEQIPRNHSSIVTQQNQVYVVG 63
Query: 198 GDCGDQYHGD------IDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGG--V 249
G D+ + D LD S W L P R + K+Y++ G +
Sbjct: 64 GLYVDEENKDQPLQSYFFQLDNVSSEWVGLP---PLPSARCLFGLGEVDDKIYVVAGKDL 120
Query: 250 GDKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVTGSDIVIYGGCGEDERPLNEL 309
+ + + + WS++ P + H + I GG +D++ N +
Sbjct: 121 QTEASLDSVLCYDPVAAKWSEVKNL---PIKVYGHNVISHNGMIYCLGGKTDDKKCTNRV 177
Query: 310 LV 311
+
Sbjct: 178 FI 179
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Length = 656 | Back alignment and structure |
|---|
Score = 54.2 bits (129), Expect = 1e-07
Identities = 44/314 (14%), Positives = 79/314 (25%), Gaps = 37/314 (11%)
Query: 14 MWLYPKVLGFNPPERWGHSACYSHGAVYIFGGCCGGLHFG-------DVLMLNLDTMVWS 66
L + P +A + FG + T + S
Sbjct: 173 PGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVS 232
Query: 67 TLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPS 126
T ++ +++V GG + K + D S W+
Sbjct: 233 DRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS----LYDSSSDSWIP---GPDMQV 285
Query: 127 PRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSS 186
R ++ + D ++ GGS G + + V + W S P+
Sbjct: 286 ARGYQSSATMSDGRVFTIGGSWSG-GVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQG 344
Query: 187 NVIAN-RLFVYG---GDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGT- 241
++ +++G G S + + G R G
Sbjct: 345 LYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKS-AGKRQSNRGVAPDAMCGNA 403
Query: 242 --------KVYIIGGVGDKHYYN------DIWILNVSTCSWSQLDTCGQQPQGRFSHAAV 287
K+ GG D + I + T + + R H +V
Sbjct: 404 VMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFAS-NGLYFARTFHTSV 462
Query: 288 VTGS-DIVIYGGCG 300
V I GG
Sbjct: 463 VLPDGSTFITGGQR 476
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Length = 656 | Back alignment and structure |
|---|
Score = 47.3 bits (111), Expect = 1e-05
Identities = 41/259 (15%), Positives = 74/259 (28%), Gaps = 28/259 (10%)
Query: 18 PKVLGFNPPERWGHSACYSHGAVYIFGGCCGGL--HFGDVLMLNLDTMVWSTLATTGQGP 75
P S ++FG G + M T + + G+
Sbjct: 330 PNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQ 389
Query: 76 GPRDSHSAILWGH---------KMIVFGGTNGY---KKVNDLHILDLESKEWM-RPECRG 122
R + G+ K++ FGG+ Y + HI+ L
Sbjct: 390 SNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFAS 449
Query: 123 AP-PSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLH----VLDLKTMRWASPAVKGDI 177
R HT+ ++ D I GG G + + + + +
Sbjct: 450 NGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYK---QNPN 506
Query: 178 PVPRDSHSSNVIAN--RLFVYGGDCGDQY---HGDIDMLDMNSLTWSRLAIIGSSPGVRA 232
+ R HS +++ R+F GG H D + N L S + R
Sbjct: 507 SIVRVYHSISLLLPDGRVFNGGGGLCGDCTTNHFDAQIFTPNYLYNSNGNLATRPKITRT 566
Query: 233 GHAAINIGTKVYIIGGVGD 251
++ +G ++ I
Sbjct: 567 STQSVKVGGRITISTDSSI 585
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 650 | |||
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 100.0 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 100.0 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 100.0 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 100.0 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 100.0 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 100.0 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 100.0 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 100.0 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 100.0 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 100.0 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 100.0 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 100.0 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 100.0 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 100.0 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 100.0 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 99.97 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 99.97 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 99.94 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.02 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 97.82 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.25 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 97.18 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 97.12 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.11 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 97.08 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 96.98 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 96.89 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 96.87 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 96.81 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 96.78 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 96.77 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 96.7 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 96.7 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 96.68 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 96.62 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 96.55 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 96.53 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 96.51 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 96.51 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 96.49 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 96.46 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 96.41 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 96.29 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 96.27 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 96.19 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 96.12 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 96.1 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 96.09 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 96.08 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 96.07 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 96.03 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 95.97 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 95.91 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 95.81 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 95.76 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 95.7 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 95.69 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 95.68 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 95.65 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 95.65 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 95.64 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 95.59 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 95.52 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 95.48 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 95.47 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 95.47 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 95.46 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 95.39 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 95.29 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 95.27 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 95.25 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 95.21 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 95.19 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 95.16 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 95.15 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 95.11 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 95.0 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 95.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 94.96 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 94.93 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 94.92 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 94.82 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 94.81 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 94.74 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 94.68 | |
| 1qhu_A | 460 | Protein (hemopexin); beta propeller, HAEM binding | 94.67 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 94.63 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 94.58 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 94.58 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 94.49 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 94.48 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 94.36 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 94.34 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 94.3 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 94.26 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 94.22 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 94.21 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 94.16 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 94.12 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 94.09 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 94.09 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 94.04 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 93.95 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 93.87 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 93.87 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 93.86 | |
| 1pex_A | 207 | Collagenase-3, MMP-13; C-terminal hemopexin-like d | 93.85 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 93.81 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 93.76 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 93.75 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 93.74 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 93.69 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 93.63 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 93.59 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 93.55 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 93.55 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 93.52 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 93.51 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 93.46 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 93.38 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 93.18 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 93.18 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 93.16 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 93.05 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 93.05 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 92.99 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 92.96 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 92.85 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 92.74 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 92.73 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 92.68 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 92.61 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 92.54 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 92.51 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 92.49 | |
| 1itv_A | 195 | MMP9; adaptive molecular recognition, beta propell | 92.48 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 92.46 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 92.44 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 92.38 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 92.32 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 92.31 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 92.23 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 92.21 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 92.2 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 92.2 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 92.17 | |
| 1pex_A | 207 | Collagenase-3, MMP-13; C-terminal hemopexin-like d | 92.13 | |
| 1itv_A | 195 | MMP9; adaptive molecular recognition, beta propell | 92.12 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 92.03 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 92.01 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 91.99 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 91.95 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 91.81 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 91.77 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 91.77 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 91.76 | |
| 1gen_A | 218 | Gelatinase A; hydrolase, hemopexin domain, metallo | 91.76 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 91.72 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 91.68 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 91.55 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 91.55 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 91.24 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 91.23 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 91.2 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 91.13 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 91.06 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 91.04 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 90.86 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 90.74 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 90.71 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 90.64 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 90.37 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 90.2 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 90.06 | |
| 1su3_A | 450 | Interstitial collagenase; prodomain, hemopexin dom | 89.99 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 89.74 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 89.51 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 89.5 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 89.46 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 89.44 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 89.28 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 89.2 | |
| 1qhu_A | 460 | Protein (hemopexin); beta propeller, HAEM binding | 89.18 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 89.16 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 89.06 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 89.04 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 89.02 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 88.98 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 88.79 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 88.65 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 88.6 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 88.28 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 88.01 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 87.95 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 87.44 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 86.89 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 86.83 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 86.79 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 86.48 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 86.46 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 86.44 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 86.33 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 86.25 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 86.18 | |
| 3c7x_A | 196 | Matrix metalloproteinase-14; membrane protein inte | 86.14 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 86.07 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 85.85 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 85.83 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 85.82 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 85.53 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 85.5 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 85.1 | |
| 3ba0_A | 365 | Macrophage metalloelastase; FULL-length MMP-12, he | 85.01 | |
| 1su3_A | 450 | Interstitial collagenase; prodomain, hemopexin dom | 84.77 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 84.43 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 84.04 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 83.96 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 83.44 | |
| 3c7x_A | 196 | Matrix metalloproteinase-14; membrane protein inte | 83.24 | |
| 1gen_A | 218 | Gelatinase A; hydrolase, hemopexin domain, metallo | 83.23 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 83.14 | |
| 3ju4_A | 670 | Endo-N-acetylneuraminidase; endonf, polysia, high- | 82.83 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 82.8 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 82.77 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 82.21 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 81.93 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 81.83 | |
| 3ba0_A | 365 | Macrophage metalloelastase; FULL-length MMP-12, he | 81.44 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 81.27 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 81.19 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 80.55 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 80.53 |
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-42 Score=363.35 Aligned_cols=276 Identities=17% Similarity=0.241 Sum_probs=239.1
Q ss_pred cCCCCCCCcceeEEEEECCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEccc---
Q 006334 20 VLGFNPPERWGHSACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGT--- 96 (650)
Q Consensus 20 ~~g~~P~~R~ghs~v~~~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~--- 96 (650)
..+..|++|.+|+++.+++.||+|||. ....++++++||+.+++|+.++.+ |.+|.+|++++++++||||||.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~i~v~GG~-~~~~~~~~~~~d~~~~~W~~~~~~---p~~r~~~~~~~~~~~lyv~GG~~~~ 82 (308)
T 1zgk_A 7 HHHSSGLVPRGSHAPKVGRLIYTAGGY-FRQSLSYLEAYNPSNGTWLRLADL---QVPRSGLAGCVVGGLLYAVGGRNNS 82 (308)
T ss_dssp --------------CCCCCCEEEECCB-SSSBCCCEEEEETTTTEEEECCCC---SSCCBSCEEEEETTEEEEECCEEEE
T ss_pred ccccCCeeeCCccccCCCCEEEEEeCc-CCCCcceEEEEcCCCCeEeECCCC---CcccccceEEEECCEEEEECCCcCC
Confidence 455678899999999999999999998 556789999999999999999765 8899999999999999999998
Q ss_pred -CCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccC
Q 006334 97 -NGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKG 175 (650)
Q Consensus 97 -~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~ 175 (650)
++...++++++||+.+++|+.+ ..+|.+|..|+++++ +++|||+||... ...++++++||+.+++|+.+.
T Consensus 83 ~~~~~~~~~~~~~d~~~~~W~~~---~~~p~~r~~~~~~~~-~~~iyv~GG~~~--~~~~~~~~~yd~~~~~W~~~~--- 153 (308)
T 1zgk_A 83 PDGNTDSSALDCYNPMTNQWSPC---APMSVPRNRIGVGVI-DGHIYAVGGSHG--CIHHNSVERYEPERDEWHLVA--- 153 (308)
T ss_dssp TTEEEECCCEEEEETTTTEEEEC---CCCSSCCBTCEEEEE-TTEEEEECCEET--TEECCCEEEEETTTTEEEECC---
T ss_pred CCCCeecceEEEECCCCCeEeEC---CCCCcCccccEEEEE-CCEEEEEcCCCC--CcccccEEEECCCCCeEeECC---
Confidence 5556689999999999999997 578899999999988 699999999853 456899999999999999887
Q ss_pred CCCCCCCcceeeeecCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCccc
Q 006334 176 DIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYY 255 (650)
Q Consensus 176 ~lP~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~ 255 (650)
++|.+|..|++++++++||++||.+....++++++||+.+++|+.++ ++|.+|..|++++++++|||+||.+.....
T Consensus 154 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~ 230 (308)
T 1zgk_A 154 PMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMIT---AMNTIRSGAGVCVLHNCIYAAGGYDGQDQL 230 (308)
T ss_dssp CCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEECCBCSSSBC
T ss_pred CCCccccceEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCC---CCCCccccceEEEECCEEEEEeCCCCCCcc
Confidence 88999999999999999999999887777999999999999999987 788899999999999999999999887788
Q ss_pred CeEEEEECCCCcEEEeecCCCCCCCcceeEEEEECCeEEEEcCCCCCCCCCCcEEEEecC
Q 006334 256 NDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVTGSDIVIYGGCGEDERPLNELLVLQLG 315 (650)
Q Consensus 256 ~dv~~yD~~t~~W~~l~~~~~~p~~R~~hsav~~~~~lyV~GG~~~~~~~~~d~~~l~l~ 315 (650)
+++++||+++++|+.+. .+|.+|.+|++++++++|||+||.+. ....+++++||+.
T Consensus 231 ~~v~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~i~v~GG~~~-~~~~~~v~~yd~~ 286 (308)
T 1zgk_A 231 NSVERYDVETETWTFVA---PMKHRRSALGITVHQGRIYVLGGYDG-HTFLDSVECYDPD 286 (308)
T ss_dssp CCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEECCBCS-SCBCCEEEEEETT
T ss_pred ceEEEEeCCCCcEEECC---CCCCCccceEEEEECCEEEEEcCcCC-CcccceEEEEcCC
Confidence 99999999999999987 47889999999999999999999864 3467899999986
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-41 Score=351.66 Aligned_cols=268 Identities=19% Similarity=0.336 Sum_probs=242.0
Q ss_pred CCcCCCeEEeeecCCCCCCCcceeEEEEECCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEEC
Q 006334 8 NAKRAAMWLYPKVLGFNPPERWGHSACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWG 87 (650)
Q Consensus 8 ~~~~~~~W~~~~~~g~~P~~R~ghs~v~~~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~ 87 (650)
++..+.+|..+ +..|.+|.+|+++.++++|||+||......++++++||+.+++|+.++.+ |.+|..|++++++
T Consensus 35 ~d~~~~~W~~~---~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~---p~~r~~~~~~~~~ 108 (302)
T 2xn4_A 35 YDFKEERWHQV---AELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANM---RDRRSTLGAAVLN 108 (302)
T ss_dssp EETTTTEEEEE---CCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCC---SSCCBSCEEEEET
T ss_pred EcCcCCcEeEc---ccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCC---CccccceEEEEEC
Confidence 45667889975 36788999999999999999999998777889999999999999999876 7899999999999
Q ss_pred CEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCc
Q 006334 88 HKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMR 167 (650)
Q Consensus 88 ~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~ 167 (650)
++|||+||.++...++++++||+.+++|+.+ ..+|.+|..|+++++ +++||++||.+......++++++||+.+++
T Consensus 109 ~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~---~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~ 184 (302)
T 2xn4_A 109 GLLYAVGGFDGSTGLSSVEAYNIKSNEWFHV---APMNTRRSSVGVGVV-GGLLYAVGGYDVASRQCLSTVECYNATTNE 184 (302)
T ss_dssp TEEEEEEEECSSCEEEEEEEEETTTTEEEEE---CCCSSCCBSCEEEEE-TTEEEEECCEETTTTEECCCEEEEETTTTE
T ss_pred CEEEEEcCCCCCccCceEEEEeCCCCeEeec---CCCCCcccCceEEEE-CCEEEEEeCCCCCCCccccEEEEEeCCCCc
Confidence 9999999998877889999999999999998 578899999999988 699999999865434568999999999999
Q ss_pred eeeccccCCCCCCCCcceeeeecCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEe
Q 006334 168 WASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIG 247 (650)
Q Consensus 168 Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~G 247 (650)
|+.+. .+|.+|..|++++++++||++||.++....+++++||+.+++|+.+. ++|.+|..|+++.++++|||+|
T Consensus 185 W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~~~i~v~G 258 (302)
T 2xn4_A 185 WTYIA---EMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVA---DMNMCRRNAGVCAVNGLLYVVG 258 (302)
T ss_dssp EEEEC---CCSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEEC
T ss_pred EEECC---CCccccccccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCC---CCCCccccCeEEEECCEEEEEC
Confidence 99886 88999999999999999999999988778899999999999999998 7888999999999999999999
Q ss_pred ccCCCcccCeEEEEECCCCcEEEeecCCCCCCCcceeEEEEECCeE
Q 006334 248 GVGDKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVTGSDI 293 (650)
Q Consensus 248 G~~~~~~~~dv~~yD~~t~~W~~l~~~~~~p~~R~~hsav~~~~~l 293 (650)
|.+.....+++++||+++++|+.++. .++.+|.+|++++++++|
T Consensus 259 G~~~~~~~~~v~~yd~~~~~W~~~~~--~~~~~r~~~~~~~~~~~i 302 (302)
T 2xn4_A 259 GDDGSCNLASVEYYNPTTDKWTVVSS--CMSTGRSYAGVTVIDKRL 302 (302)
T ss_dssp CBCSSSBCCCEEEEETTTTEEEECSS--CCSSCCBSCEEEEEEC--
T ss_pred CcCCCcccccEEEEcCCCCeEEECCc--ccCcccccceEEEecccC
Confidence 99887788999999999999999863 478899999999998765
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-40 Score=344.48 Aligned_cols=263 Identities=16% Similarity=0.266 Sum_probs=234.4
Q ss_pred EEEECCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEECCC
Q 006334 33 ACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLES 112 (650)
Q Consensus 33 ~v~~~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t 112 (650)
.+.+++.||+|||.+. ...+++++||+.+++|..+..+ |.+|.+|+++.++++|||+||.++...++++++||+.+
T Consensus 11 ~~~~~~~i~v~GG~~~-~~~~~~~~~d~~~~~W~~~~~~---p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~ 86 (302)
T 2xn4_A 11 PMNLPKLMVVVGGQAP-KAIRSVECYDFKEERWHQVAEL---PSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVK 86 (302)
T ss_dssp ----CEEEEEECCBSS-SBCCCEEEEETTTTEEEEECCC---SSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTT
T ss_pred ccCCCCEEEEECCCCC-CCCCcEEEEcCcCCcEeEcccC---CcccccceEEEECCEEEEEeCcCCCccccceEEECCCC
Confidence 4456889999999865 4678999999999999999765 88999999999999999999998888889999999999
Q ss_pred CcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeeecCE
Q 006334 113 KEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANR 192 (650)
Q Consensus 113 ~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~~~~ 192 (650)
++|+.+ ..+|.+|..|+++++ +++|||+||.+. ...++++++||+.+++|+.+. ++|.+|..|+++.++++
T Consensus 87 ~~W~~~---~~~p~~r~~~~~~~~-~~~iyv~GG~~~--~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~ 157 (302)
T 2xn4_A 87 DQWTSV---ANMRDRRSTLGAAVL-NGLLYAVGGFDG--STGLSSVEAYNIKSNEWFHVA---PMNTRRSSVGVGVVGGL 157 (302)
T ss_dssp TEEEEE---CCCSSCCBSCEEEEE-TTEEEEEEEECS--SCEEEEEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTE
T ss_pred CceeeC---CCCCccccceEEEEE-CCEEEEEcCCCC--CccCceEEEEeCCCCeEeecC---CCCCcccCceEEEECCE
Confidence 999998 578899999999988 699999999853 456899999999999999887 88999999999999999
Q ss_pred EEEEeccCCC--CccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCcEEE
Q 006334 193 LFVYGGDCGD--QYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQ 270 (650)
Q Consensus 193 Iyv~GG~~~~--~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~ 270 (650)
||++||.+.. ..++++++||+.+++|+.+. ++|.+|..|++++++++|||+||.++....+++++||+++++|+.
T Consensus 158 iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 234 (302)
T 2xn4_A 158 LYAVGGYDVASRQCLSTVECYNATTNEWTYIA---EMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQ 234 (302)
T ss_dssp EEEECCEETTTTEECCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEE
T ss_pred EEEEeCCCCCCCccccEEEEEeCCCCcEEECC---CCccccccccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEee
Confidence 9999997654 35889999999999999997 788999999999999999999999887778999999999999999
Q ss_pred eecCCCCCCCcceeEEEEECCeEEEEcCCCCCCCCCCcEEEEecC
Q 006334 271 LDTCGQQPQGRFSHAAVVTGSDIVIYGGCGEDERPLNELLVLQLG 315 (650)
Q Consensus 271 l~~~~~~p~~R~~hsav~~~~~lyV~GG~~~~~~~~~d~~~l~l~ 315 (650)
+.. ++.+|.+|+++.++++|||+||.+.. ...+++++||+.
T Consensus 235 ~~~---~~~~r~~~~~~~~~~~i~v~GG~~~~-~~~~~v~~yd~~ 275 (302)
T 2xn4_A 235 VAD---MNMCRRNAGVCAVNGLLYVVGGDDGS-CNLASVEYYNPT 275 (302)
T ss_dssp ECC---CSSCCBSCEEEEETTEEEEECCBCSS-SBCCCEEEEETT
T ss_pred CCC---CCCccccCeEEEECCEEEEECCcCCC-cccccEEEEcCC
Confidence 974 78899999999999999999998643 357889999986
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-40 Score=344.10 Aligned_cols=262 Identities=18% Similarity=0.303 Sum_probs=237.6
Q ss_pred EECCEEEEEcc-CCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEECCCC
Q 006334 35 YSHGAVYIFGG-CCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESK 113 (650)
Q Consensus 35 ~~~~~IyvfGG-~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~ 113 (650)
.+++.||+||| .......+++++||+.+++|..++.+ |.+|.+|+++.++++||||||.++...++++++||+.++
T Consensus 12 ~~~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~---p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~ 88 (301)
T 2vpj_A 12 GANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSI---TRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTAD 88 (301)
T ss_dssp -CCEEEEEECCEETTTEECCCEEEEETTTTEEEECCCC---SSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCC
T ss_pred cCCCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCC---ChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCC
Confidence 36889999999 55567889999999999999999865 779999999999999999999987778899999999999
Q ss_pred c---EEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeeec
Q 006334 114 E---WMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIA 190 (650)
Q Consensus 114 ~---W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~~ 190 (650)
+ |+.+ ..+|.+|..|+++++ +++|||+||... ...++++++||+.+++|+.+. ++|.+|..|+++.++
T Consensus 89 ~~~~W~~~---~~~p~~r~~~~~~~~-~~~lyv~GG~~~--~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~ 159 (301)
T 2vpj_A 89 EDGVWYSV---APMNVRRGLAGATTL-GDMIYVSGGFDG--SRRHTSMERYDPNIDQWSMLG---DMQTAREGAGLVVAS 159 (301)
T ss_dssp TTCCCEEE---CCCSSCCBSCEEEEE-TTEEEEECCBCS--SCBCCEEEEEETTTTEEEEEE---ECSSCCBSCEEEEET
T ss_pred CCCeeEEC---CCCCCCccceeEEEE-CCEEEEEcccCC--CcccceEEEEcCCCCeEEECC---CCCCCcccceEEEEC
Confidence 9 9998 678899999999988 699999999853 446899999999999999987 788999999999999
Q ss_pred CEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCcEEE
Q 006334 191 NRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQ 270 (650)
Q Consensus 191 ~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~ 270 (650)
++||++||.+....++++++||+.+++|+.+. ++|.+|..|+++.++++|||+||.+.....+++++||+++++|+.
T Consensus 160 ~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 236 (301)
T 2vpj_A 160 GVIYCLGGYDGLNILNSVEKYDPHTGHWTNVT---PMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTT 236 (301)
T ss_dssp TEEEEECCBCSSCBCCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred CEEEEECCCCCCcccceEEEEeCCCCcEEeCC---CCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEE
Confidence 99999999988788999999999999999997 788999999999999999999999887778999999999999999
Q ss_pred eecCCCCCCCcceeEEEEECCeEEEEcCCCCCCCCCCcEEEEecC
Q 006334 271 LDTCGQQPQGRFSHAAVVTGSDIVIYGGCGEDERPLNELLVLQLG 315 (650)
Q Consensus 271 l~~~~~~p~~R~~hsav~~~~~lyV~GG~~~~~~~~~d~~~l~l~ 315 (650)
+.. +|.+|.+|++++++++|||+||.... ...+++++|++.
T Consensus 237 ~~~---~p~~r~~~~~~~~~~~i~v~GG~~~~-~~~~~v~~yd~~ 277 (301)
T 2vpj_A 237 VTS---MTTPRCYVGATVLRGRLYAIAGYDGN-SLLSSIECYDPI 277 (301)
T ss_dssp ECC---CSSCCBSCEEEEETTEEEEECCBCSS-SBEEEEEEEETT
T ss_pred CCC---CCCcccceeEEEECCEEEEEcCcCCC-cccccEEEEcCC
Confidence 964 78899999999999999999997644 356788999886
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-40 Score=345.03 Aligned_cols=257 Identities=18% Similarity=0.345 Sum_probs=233.2
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEECCCCcEE
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESKEWM 116 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~ 116 (650)
.+.||+|||... .+++++||+.+++|+.++.+ |.+|.+|++++++++||||||.+ ...++++++||+.+++|+
T Consensus 11 ~~~l~~~GG~~~---~~~~~~~d~~~~~W~~~~~~---p~~r~~~~~~~~~~~lyv~GG~~-~~~~~~~~~~d~~~~~W~ 83 (306)
T 3ii7_A 11 HDYRIALFGGSQ---PQSCRYFNPKDYSWTDIRCP---FEKRRDAACVFWDNVVYILGGSQ-LFPIKRMDCYNVVKDSWY 83 (306)
T ss_dssp CCEEEEEECCSS---TTSEEEEETTTTEEEECCCC---SCCCBSCEEEEETTEEEEECCBS-SSBCCEEEEEETTTTEEE
T ss_pred cceEEEEeCCCC---CceEEEecCCCCCEecCCCC---CcccceeEEEEECCEEEEEeCCC-CCCcceEEEEeCCCCeEE
Confidence 489999999765 78999999999999999766 78999999999999999999998 667899999999999999
Q ss_pred eeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeeecCEEEEE
Q 006334 117 RPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVY 196 (650)
Q Consensus 117 ~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~ 196 (650)
.+ ..+|.+|..|+++++ +++|||+||.+. ....++++++||+.+++|+.+. ++|.+|..|+++.++++||++
T Consensus 84 ~~---~~~p~~r~~~~~~~~-~~~iyv~GG~~~-~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~ 155 (306)
T 3ii7_A 84 SK---LGPPTPRDSLAACAA-EGKIYTSGGSEV-GNSALYLFECYDTRTESWHTKP---SMLTQRCSHGMVEANGLIYVC 155 (306)
T ss_dssp EE---ECCSSCCBSCEEEEE-TTEEEEECCBBT-TBSCCCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEE
T ss_pred EC---CCCCccccceeEEEE-CCEEEEECCCCC-CCcEeeeEEEEeCCCCceEeCC---CCcCCcceeEEEEECCEEEEE
Confidence 98 568899999999988 699999999852 4567899999999999999876 899999999999999999999
Q ss_pred eccCCCCc----cCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCcEEEee
Q 006334 197 GGDCGDQY----HGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLD 272 (650)
Q Consensus 197 GG~~~~~~----~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~ 272 (650)
||...... ++++++||+.+++|+.++ ++|.+|..|++++++++|||+||.+.....+++++||+++++|+.+.
T Consensus 156 GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~ 232 (306)
T 3ii7_A 156 GGSLGNNVSGRVLNSCEVYDPATETWTELC---PMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVS 232 (306)
T ss_dssp CCEESCTTTCEECCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECC
T ss_pred CCCCCCCCcccccceEEEeCCCCCeEEECC---CccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECC
Confidence 99876654 899999999999999998 78899999999999999999999988778899999999999999996
Q ss_pred cCCCCCCCcceeEEEEECCeEEEEcCCCCCCCCCCcEEEEecC
Q 006334 273 TCGQQPQGRFSHAAVVTGSDIVIYGGCGEDERPLNELLVLQLG 315 (650)
Q Consensus 273 ~~~~~p~~R~~hsav~~~~~lyV~GG~~~~~~~~~d~~~l~l~ 315 (650)
. +|.+|.+|++++++++|||+||.+.. ...+++++|++.
T Consensus 233 ~---~p~~r~~~~~~~~~~~i~v~GG~~~~-~~~~~~~~yd~~ 271 (306)
T 3ii7_A 233 P---MPWKGVTVKCAAVGSIVYVLAGFQGV-GRLGHILEYNTE 271 (306)
T ss_dssp C---CSCCBSCCEEEEETTEEEEEECBCSS-SBCCEEEEEETT
T ss_pred C---CCCCccceeEEEECCEEEEEeCcCCC-eeeeeEEEEcCC
Confidence 4 78899999999999999999998644 367899999987
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-40 Score=345.03 Aligned_cols=261 Identities=20% Similarity=0.314 Sum_probs=237.7
Q ss_pred CCcCCCeEEeeecCCCCCCCcceeEEEEECCEEEEEccC----CCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEE
Q 006334 8 NAKRAAMWLYPKVLGFNPPERWGHSACYSHGAVYIFGGC----CGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSA 83 (650)
Q Consensus 8 ~~~~~~~W~~~~~~g~~P~~R~ghs~v~~~~~IyvfGG~----~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa 83 (650)
+++.+.+|..+ +..|.+|.+|+++++++.|||+||. .....++++|+||+.+++|+.++.+ |.+|..|++
T Consensus 44 ~d~~~~~W~~~---~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~---p~~r~~~~~ 117 (308)
T 1zgk_A 44 YNPSNGTWLRL---ADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPM---SVPRNRIGV 117 (308)
T ss_dssp EETTTTEEEEC---CCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCC---SSCCBTCEE
T ss_pred EcCCCCeEeEC---CCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCC---CcCccccEE
Confidence 56778899965 4678899999999999999999998 5566789999999999999999876 789999999
Q ss_pred EEECCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEec
Q 006334 84 ILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDL 163 (650)
Q Consensus 84 ~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~ 163 (650)
++++++|||+||.++...++++++||+.+++|+.+ ..+|.+|..|+++++ +++|||+||.+. ...++++++||+
T Consensus 118 ~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~---~~~p~~r~~~~~~~~-~~~iyv~GG~~~--~~~~~~~~~yd~ 191 (308)
T 1zgk_A 118 GVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLV---APMLTRRIGVGVAVL-NRLLYAVGGFDG--TNRLNSAECYYP 191 (308)
T ss_dssp EEETTEEEEECCEETTEECCCEEEEETTTTEEEEC---CCCSSCCBSCEEEEE-TTEEEEECCBCS--SCBCCCEEEEET
T ss_pred EEECCEEEEEcCCCCCcccccEEEECCCCCeEeEC---CCCCccccceEEEEE-CCEEEEEeCCCC--CCcCceEEEEeC
Confidence 99999999999998877889999999999999997 578899999999988 799999999853 334899999999
Q ss_pred CCCceeeccccCCCCCCCCcceeeeecCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEE
Q 006334 164 KTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKV 243 (650)
Q Consensus 164 ~t~~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~I 243 (650)
.+++|+.+. .+|.+|..|+++.++++||++||.+.....+++++||+.+++|+.+. ++|.+|..|++++++++|
T Consensus 192 ~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~i 265 (308)
T 1zgk_A 192 ERNEWRMIT---AMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVA---PMKHRRSALGITVHQGRI 265 (308)
T ss_dssp TTTEEEECC---CCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTEE
T ss_pred CCCeEeeCC---CCCCccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEECC---CCCCCccceEEEEECCEE
Confidence 999999887 88999999999999999999999988778999999999999999988 788999999999999999
Q ss_pred EEEeccCCCcccCeEEEEECCCCcEEEeecCCCCCCCcceeEEEEE
Q 006334 244 YIIGGVGDKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVT 289 (650)
Q Consensus 244 yI~GG~~~~~~~~dv~~yD~~t~~W~~l~~~~~~p~~R~~hsav~~ 289 (650)
||+||.+.....+++++||+++++|+.+.. +|.+|.+|+++++
T Consensus 266 ~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~---~p~~r~~~~~~~l 308 (308)
T 1zgk_A 266 YVLGGYDGHTFLDSVECYDPDTDTWSEVTR---MTSGRSGVGVAVT 308 (308)
T ss_dssp EEECCBCSSCBCCEEEEEETTTTEEEEEEE---CSSCCBSCEEEEC
T ss_pred EEEcCcCCCcccceEEEEcCCCCEEeecCC---CCCCcccceeEeC
Confidence 999999888888999999999999999975 7899999999864
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-40 Score=343.15 Aligned_cols=264 Identities=19% Similarity=0.280 Sum_probs=238.1
Q ss_pred CCcCCCeEEeeecCCCCCCCcceeEEEEECCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEEC
Q 006334 8 NAKRAAMWLYPKVLGFNPPERWGHSACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWG 87 (650)
Q Consensus 8 ~~~~~~~W~~~~~~g~~P~~R~ghs~v~~~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~ 87 (650)
+++.+.+|..+ ...|.+|.+|+++++++.|||+||.. ...++++++||+.+++|+.++.+ |.+|.+|++++++
T Consensus 29 ~d~~~~~W~~~---~~~p~~r~~~~~~~~~~~lyv~GG~~-~~~~~~~~~~d~~~~~W~~~~~~---p~~r~~~~~~~~~ 101 (306)
T 3ii7_A 29 FNPKDYSWTDI---RCPFEKRRDAACVFWDNVVYILGGSQ-LFPIKRMDCYNVVKDSWYSKLGP---PTPRDSLAACAAE 101 (306)
T ss_dssp EETTTTEEEEC---CCCSCCCBSCEEEEETTEEEEECCBS-SSBCCEEEEEETTTTEEEEEECC---SSCCBSCEEEEET
T ss_pred ecCCCCCEecC---CCCCcccceeEEEEECCEEEEEeCCC-CCCcceEEEEeCCCCeEEECCCC---CccccceeEEEEC
Confidence 56788899965 35788999999999999999999988 67789999999999999999876 8899999999999
Q ss_pred CEEEEEcccC-CCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCC--cccceEEEEecC
Q 006334 88 HKMIVFGGTN-GYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEA--NYLNDLHVLDLK 164 (650)
Q Consensus 88 ~~lyVfGG~~-~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~--~~~~dv~~yd~~ 164 (650)
++|||+||.+ +...++++++||+.+++|+.+ ..+|.+|..|+++++ +++|||+||...... ..++++++||+.
T Consensus 102 ~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~---~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~ 177 (306)
T 3ii7_A 102 GKIYTSGGSEVGNSALYLFECYDTRTESWHTK---PSMLTQRCSHGMVEA-NGLIYVCGGSLGNNVSGRVLNSCEVYDPA 177 (306)
T ss_dssp TEEEEECCBBTTBSCCCCEEEEETTTTEEEEE---CCCSSCCBSCEEEEE-TTEEEEECCEESCTTTCEECCCEEEEETT
T ss_pred CEEEEECCCCCCCcEeeeEEEEeCCCCceEeC---CCCcCCcceeEEEEE-CCEEEEECCCCCCCCcccccceEEEeCCC
Confidence 9999999997 556689999999999999998 678999999999988 699999999853221 238999999999
Q ss_pred CCceeeccccCCCCCCCCcceeeeecCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEE
Q 006334 165 TMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVY 244 (650)
Q Consensus 165 t~~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~Iy 244 (650)
+++|+.+. ++|.+|..|+++.++++||++||.+....++++++||+.+++|+.+. ++|.+|..|++++++++||
T Consensus 178 ~~~W~~~~---~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~i~ 251 (306)
T 3ii7_A 178 TETWTELC---PMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVS---PMPWKGVTVKCAAVGSIVY 251 (306)
T ss_dssp TTEEEEEC---CCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECC---CCSCCBSCCEEEEETTEEE
T ss_pred CCeEEECC---CccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECC---CCCCCccceeEEEECCEEE
Confidence 99999887 89999999999999999999999888778899999999999999997 7889999999999999999
Q ss_pred EEeccCCCcccCeEEEEECCCCcEEEeecCCCCCCCcceeEEEEECC
Q 006334 245 IIGGVGDKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVTGS 291 (650)
Q Consensus 245 I~GG~~~~~~~~dv~~yD~~t~~W~~l~~~~~~p~~R~~hsav~~~~ 291 (650)
|+||.+.....+++++||+++++|+.+.. ++.+|.+|+++++.+
T Consensus 252 v~GG~~~~~~~~~~~~yd~~~~~W~~~~~---~~~~r~~~~~~~~~~ 295 (306)
T 3ii7_A 252 VLAGFQGVGRLGHILEYNTETDKWVANSK---VRAFPVTSCLICVVD 295 (306)
T ss_dssp EEECBCSSSBCCEEEEEETTTTEEEEEEE---EECCSCTTCEEEEEE
T ss_pred EEeCcCCCeeeeeEEEEcCCCCeEEeCCC---cccccceeEEEEECC
Confidence 99999888888999999999999999975 678899999888754
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=349.50 Aligned_cols=271 Identities=18% Similarity=0.263 Sum_probs=238.9
Q ss_pred CCCcCCCeEEeeecCCCCCCCcceeEEEEECCEEEEEccCC------CCcccceEEEEECCCCcEEEeecCCCCCCCCcc
Q 006334 7 ENAKRAAMWLYPKVLGFNPPERWGHSACYSHGAVYIFGGCC------GGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDS 80 (650)
Q Consensus 7 ~~~~~~~~W~~~~~~g~~P~~R~ghs~v~~~~~IyvfGG~~------~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~ 80 (650)
.+++.+.+|.. .....|.+|.+|++++++++|||+||.. .....+++|+||+.+++|+.++.+ |.+|.+
T Consensus 17 ~yd~~~~~W~~--~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~---p~~r~~ 91 (315)
T 4asc_A 17 AYDPAANECYC--ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPL---PSPRCL 91 (315)
T ss_dssp EEETTTTEEEE--EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCB---SSCEES
T ss_pred EECCCCCeEec--CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCC---Ccchhc
Confidence 35778899985 3334477999999999999999999962 233456799999999999999776 889999
Q ss_pred eEEEEECCEEEEEcccC---CCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccce
Q 006334 81 HSAILWGHKMIVFGGTN---GYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLND 157 (650)
Q Consensus 81 hsa~~~~~~lyVfGG~~---~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~d 157 (650)
|++++++++|||+||.+ +...++++++||+.+++|+.+ ..+|.+|..|+++++ +++|||+||.. .....+++
T Consensus 92 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~---~~~p~~r~~~~~~~~-~~~iyv~GG~~-~~~~~~~~ 166 (315)
T 4asc_A 92 FGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGES---DPLPYVVYGHTVLSH-MDLVYVIGGKG-SDRKCLNK 166 (315)
T ss_dssp CEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEEC---CCCSSCCBSCEEEEE-TTEEEEECCBC-TTSCBCCC
T ss_pred eeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeEC---CCCCCcccceeEEEE-CCEEEEEeCCC-CCCcccce
Confidence 99999999999999975 356689999999999999997 578899999999987 69999999984 34567899
Q ss_pred EEEEecCCCceeeccccCCCCCCCCcceeeeecCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEE
Q 006334 158 LHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAI 237 (650)
Q Consensus 158 v~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v 237 (650)
+++||+.+++|+.+. ++|.+|..|+++.++++||++||.+....++++++||+.+++|+.+. ++|.+|..|+++
T Consensus 167 ~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~ 240 (315)
T 4asc_A 167 MCVYDPKKFEWKELA---PMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFE---AFPQERSSLSLV 240 (315)
T ss_dssp EEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEEC---CCSSCCBSCEEE
T ss_pred EEEEeCCCCeEEECC---CCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECC---CCCCcccceeEE
Confidence 999999999999887 88999999999999999999999988788899999999999999997 788999999999
Q ss_pred EECCEEEEEeccCCC---------cccCeEEEEECCCCcEEEeecCCCCCCCcceeEEEEECCeEEEEcC
Q 006334 238 NIGTKVYIIGGVGDK---------HYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVTGSDIVIYGG 298 (650)
Q Consensus 238 ~~~~~IyI~GG~~~~---------~~~~dv~~yD~~t~~W~~l~~~~~~p~~R~~hsav~~~~~lyV~GG 298 (650)
.++++|||+||.+.. ..++++|+||+++++|+.+ .+.+|..|++++++++|||+..
T Consensus 241 ~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~-----~~~~r~~~~~~~~~~~l~v~~~ 305 (315)
T 4asc_A 241 SLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV-----LREIAYAAGATFLPVRLNVLRL 305 (315)
T ss_dssp EETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE-----ESCSSCCSSCEEEEEEECGGGS
T ss_pred EECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh-----ccCCcCccceEEeCCEEEEEEe
Confidence 999999999998531 4578999999999999999 4667999999999999999965
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=338.61 Aligned_cols=262 Identities=18% Similarity=0.315 Sum_probs=238.4
Q ss_pred CCcCCCeEEeeecCCCCCCCcceeEEEEECCEEEEEccCCCCcccceEEEEECCCCc---EEEeecCCCCCCCCcceEEE
Q 006334 8 NAKRAAMWLYPKVLGFNPPERWGHSACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMV---WSTLATTGQGPGPRDSHSAI 84 (650)
Q Consensus 8 ~~~~~~~W~~~~~~g~~P~~R~ghs~v~~~~~IyvfGG~~~~~~~~dv~~yD~~t~s---W~~l~~~g~~P~pR~~hsa~ 84 (650)
++..+.+|..+. ..|.+|.+|+++.+++.||||||..+....+++++||+.+++ |+.++.+ |.+|..|+++
T Consensus 36 ~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~---p~~r~~~~~~ 109 (301)
T 2vpj_A 36 YDPKTQEWSFLP---SITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPM---NVRRGLAGAT 109 (301)
T ss_dssp EETTTTEEEECC---CCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCC---SSCCBSCEEE
T ss_pred EcCCCCeEEeCC---CCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCC---CCCccceeEE
Confidence 466778999654 467899999999999999999999877788999999999999 9999766 7899999999
Q ss_pred EECCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecC
Q 006334 85 LWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLK 164 (650)
Q Consensus 85 ~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~ 164 (650)
+++++|||+||.++...++++++||+.+++|+.+ ..+|.+|..|+++++ +++||++||.+. ...++++++||+.
T Consensus 110 ~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~---~~~p~~r~~~~~~~~-~~~iyv~GG~~~--~~~~~~~~~~d~~ 183 (301)
T 2vpj_A 110 TLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSML---GDMQTAREGAGLVVA-SGVIYCLGGYDG--LNILNSVEKYDPH 183 (301)
T ss_dssp EETTEEEEECCBCSSCBCCEEEEEETTTTEEEEE---EECSSCCBSCEEEEE-TTEEEEECCBCS--SCBCCCEEEEETT
T ss_pred EECCEEEEEcccCCCcccceEEEEcCCCCeEEEC---CCCCCCcccceEEEE-CCEEEEECCCCC--CcccceEEEEeCC
Confidence 9999999999998877789999999999999998 467899999999988 799999999853 3478999999999
Q ss_pred CCceeeccccCCCCCCCCcceeeeecCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEE
Q 006334 165 TMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVY 244 (650)
Q Consensus 165 t~~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~Iy 244 (650)
+++|+.+. ++|.+|..|+++.++++||++||.+.....+++++||+.+++|+.+. .+|.+|..|++++++++||
T Consensus 184 ~~~W~~~~---~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~i~ 257 (301)
T 2vpj_A 184 TGHWTNVT---PMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVT---SMTTPRCYVGATVLRGRLY 257 (301)
T ss_dssp TTEEEEEC---CCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEE
T ss_pred CCcEEeCC---CCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECC---CCCCcccceeEEEECCEEE
Confidence 99999886 88999999999999999999999888777899999999999999997 7889999999999999999
Q ss_pred EEeccCCCcccCeEEEEECCCCcEEEeecCCCCCCCcceeEEEEEC
Q 006334 245 IIGGVGDKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVTG 290 (650)
Q Consensus 245 I~GG~~~~~~~~dv~~yD~~t~~W~~l~~~~~~p~~R~~hsav~~~ 290 (650)
|+||.+.....+++++||+++++|+.+.. +|.+|++|+++++.
T Consensus 258 v~GG~~~~~~~~~v~~yd~~~~~W~~~~~---~~~~r~~~~~~~~~ 300 (301)
T 2vpj_A 258 AIAGYDGNSLLSSIECYDPIIDSWEVVTS---MGTQRCDAGVCVLR 300 (301)
T ss_dssp EECCBCSSSBEEEEEEEETTTTEEEEEEE---EEEEEESCEEEEEE
T ss_pred EEcCcCCCcccccEEEEcCCCCeEEEcCC---CCcccccceEEEeC
Confidence 99999877778999999999999999975 78899999998874
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-40 Score=347.96 Aligned_cols=271 Identities=16% Similarity=0.275 Sum_probs=237.6
Q ss_pred CCCcCCCeEEeeecCCCCCCCcceeEEEEECCEEEEEccCCC------CcccceEEEEECCCCcEEEeecCCCCCCCCcc
Q 006334 7 ENAKRAAMWLYPKVLGFNPPERWGHSACYSHGAVYIFGGCCG------GLHFGDVLMLNLDTMVWSTLATTGQGPGPRDS 80 (650)
Q Consensus 7 ~~~~~~~~W~~~~~~g~~P~~R~ghs~v~~~~~IyvfGG~~~------~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~ 80 (650)
.+++.+.+|...+ ...|.+|.+|+++++++.|||+||... ....+++++||+.+++|..++.+ |.+|..
T Consensus 28 ~yd~~~~~W~~~~--~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~---p~~r~~ 102 (318)
T 2woz_A 28 AYDPMENECYLTA--LAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPL---PSARCL 102 (318)
T ss_dssp EEETTTTEEEEEE--ECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCB---SSCBCS
T ss_pred EECCCCCceeccc--CCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCC---Cccccc
Confidence 3567888999733 345678999999999999999999631 12345699999999999999776 889999
Q ss_pred eEEEEECCEEEEEcccC--CCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceE
Q 006334 81 HSAILWGHKMIVFGGTN--GYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDL 158 (650)
Q Consensus 81 hsa~~~~~~lyVfGG~~--~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv 158 (650)
|++++++++|||+||.+ +...++++++||+.+++|+.+ ..+|.+|..|+++++ +++|||+||... ....++++
T Consensus 103 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~---~~~p~~r~~~~~~~~-~~~iyv~GG~~~-~~~~~~~~ 177 (318)
T 2woz_A 103 FGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEV---KNLPIKVYGHNVISH-NGMIYCLGGKTD-DKKCTNRV 177 (318)
T ss_dssp CEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEE---CCCSSCEESCEEEEE-TTEEEEECCEES-SSCBCCCE
T ss_pred cceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeEC---CCCCCcccccEEEEE-CCEEEEEcCCCC-CCCccceE
Confidence 99999999999999986 445689999999999999998 578899999999987 799999999843 35578999
Q ss_pred EEEecCCCceeeccccCCCCCCCCcceeeeecCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEE
Q 006334 159 HVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAIN 238 (650)
Q Consensus 159 ~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~ 238 (650)
++||+.+++|+.+. ++|.+|..|++++++++||++||.+.....+++++||+.+++|+.+. ++|.+|..|++++
T Consensus 178 ~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~ 251 (318)
T 2woz_A 178 FIYNPKKGDWKDLA---PMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMT---EFPQERSSISLVS 251 (318)
T ss_dssp EEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCCEEECC---CCSSCCBSCEEEE
T ss_pred EEEcCCCCEEEECC---CCCCCcccceEEEECCEEEEEcCcCCCCccceEEEEECCCCeEEECC---CCCCcccceEEEE
Confidence 99999999999887 88999999999999999999999888778899999999999999987 7888999999999
Q ss_pred ECCEEEEEeccCC---------CcccCeEEEEECCCCcEEEeecCCCCCCCcceeEEEEECCeEEEEcC
Q 006334 239 IGTKVYIIGGVGD---------KHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVTGSDIVIYGG 298 (650)
Q Consensus 239 ~~~~IyI~GG~~~---------~~~~~dv~~yD~~t~~W~~l~~~~~~p~~R~~hsav~~~~~lyV~GG 298 (650)
++++|||+||.+. ....+++|+||+++++|+.+ ++.+|++|++++++++|||+.-
T Consensus 252 ~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~-----~~~~r~~~~~~~~~~~iyi~~~ 315 (318)
T 2woz_A 252 LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM-----LKEIRYASGASCLATRLNLFKL 315 (318)
T ss_dssp ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE-----ESCCGGGTTCEEEEEEEEGGGC
T ss_pred ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh-----cccccccccceeeCCEEEEEEe
Confidence 9999999999864 24578999999999999998 4778999999999999999843
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=347.30 Aligned_cols=278 Identities=21% Similarity=0.324 Sum_probs=227.5
Q ss_pred CCCCCCcceeEEEEECCEEEEEccCCCCcccceEEEEECC--CCcEEEeecCCCCC-CCCcceEEEEECCEEEEEccc-C
Q 006334 22 GFNPPERWGHSACYSHGAVYIFGGCCGGLHFGDVLMLNLD--TMVWSTLATTGQGP-GPRDSHSAILWGHKMIVFGGT-N 97 (650)
Q Consensus 22 g~~P~~R~ghs~v~~~~~IyvfGG~~~~~~~~dv~~yD~~--t~sW~~l~~~g~~P-~pR~~hsa~~~~~~lyVfGG~-~ 97 (650)
...|.+|.+|++++++++|||+||... +++|+||+. +++|+.++.+ | .+|.+|++++++++||||||. +
T Consensus 4 ~~lP~~r~~~~~~~~~~~iyv~GG~~~----~~~~~~d~~~~~~~W~~~~~~---p~~~R~~~~~~~~~~~lyv~GG~~~ 76 (357)
T 2uvk_A 4 PETPVPFKSGTGAIDNDTVYIGLGSAG----TAWYKLDTQAKDKKWTALAAF---PGGPRDQATSAFIDGNLYVFGGIGK 76 (357)
T ss_dssp CCCSSCCCSCEEEEETTEEEEECGGGT----TCEEEEETTSSSCCEEECCCC---TTCCCBSCEEEEETTEEEEECCEEE
T ss_pred CCCCccccceEEEEECCEEEEEeCcCC----CeEEEEccccCCCCeeECCCC---CCCcCccceEEEECCEEEEEcCCCC
Confidence 456889999999999999999999754 589999998 4899999876 6 789999999999999999998 3
Q ss_pred ----CCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCC----------------------
Q 006334 98 ----GYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGE---------------------- 151 (650)
Q Consensus 98 ----~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~---------------------- 151 (650)
....++++|+||+.+++|+++... +|.+|..|+++++ +++|||+||.+...
T Consensus 77 ~~~~~~~~~~~v~~yd~~~~~W~~~~~~--~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (357)
T 2uvk_A 77 NSEGLTQVFNDVHKYNPKTNSWVKLMSH--APMGMAGHVTFVH-NGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKIN 153 (357)
T ss_dssp CTTSCEEECCCEEEEETTTTEEEECSCC--CSSCCSSEEEEEE-TTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCccceeeccEEEEeCCCCcEEECCCC--CCcccccceEEEE-CCEEEEEeCcCCCcCcccccchhhcCCcccchhhhh
Confidence 234589999999999999998332 2589999999886 79999999984210
Q ss_pred ----------CcccceEEEEecCCCceeeccccCCCCCCCCc-ceeeeecCEEEEEeccCCC-CccCeEEEEEC--CCCc
Q 006334 152 ----------ANYLNDLHVLDLKTMRWASPAVKGDIPVPRDS-HSSNVIANRLFVYGGDCGD-QYHGDIDMLDM--NSLT 217 (650)
Q Consensus 152 ----------~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~-hs~v~~~~~Iyv~GG~~~~-~~~n~v~~yd~--~t~~ 217 (650)
...++++++||+.+++|+.+. ++|.+|.. |++++++++||++||.+.. ...+++++||+ .+++
T Consensus 154 ~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~---~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~ 230 (357)
T 2uvk_A 154 AHYFDKKAEDYFFNKFLLSFDPSTQQWSYAG---ESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLK 230 (357)
T ss_dssp HHHHSSCGGGGCCCCEEEEEETTTTEEEEEE---ECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CE
T ss_pred hhhccccccccCCcccEEEEeCCCCcEEECC---CCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCc
Confidence 024689999999999999886 77876554 9999999999999997543 45789999987 8999
Q ss_pred EEEeeecCCCCCcccceEEEEECCEEEEEeccCCC-----------------cccCeEEEEECCCCcEEEeecCCCCCCC
Q 006334 218 WSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDK-----------------HYYNDIWILNVSTCSWSQLDTCGQQPQG 280 (650)
Q Consensus 218 W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~-----------------~~~~dv~~yD~~t~~W~~l~~~~~~p~~ 280 (650)
|+.+... +.|..|..|++++++++|||+||.+.. ..+.++++||+++++|+.+.. +|.+
T Consensus 231 W~~~~~~-~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~---~p~~ 306 (357)
T 2uvk_A 231 WNKLAPV-SSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGE---LSQG 306 (357)
T ss_dssp EEECCCS-STTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEE---CSSC
T ss_pred EEecCCC-CCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCC---CCCC
Confidence 9999743 335557789999999999999997432 234689999999999999975 7889
Q ss_pred cceeEEEEECCeEEEEcCCCCCCCCCCcEEEEecCC
Q 006334 281 RFSHAAVVTGSDIVIYGGCGEDERPLNELLVLQLGA 316 (650)
Q Consensus 281 R~~hsav~~~~~lyV~GG~~~~~~~~~d~~~l~l~~ 316 (650)
|.+|+++.++++||||||.+.++..++++++++++.
T Consensus 307 r~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~ 342 (357)
T 2uvk_A 307 RAYGVSLPWNNSLLIIGGETAGGKAVTDSVLITVKD 342 (357)
T ss_dssp CBSSEEEEETTEEEEEEEECGGGCEEEEEEEEEC-C
T ss_pred cccceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcC
Confidence 999999999999999999987776789999999973
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-39 Score=337.03 Aligned_cols=258 Identities=16% Similarity=0.254 Sum_probs=225.5
Q ss_pred ECCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccC----C--CcCcCeEEEEE
Q 006334 36 SHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTN----G--YKKVNDLHILD 109 (650)
Q Consensus 36 ~~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~----~--~~~~ndv~~yD 109 (650)
+++.||++|| +++++||+.+++|.. ..+.. |.+|.+|++++++++|||+||.. . ....+++++||
T Consensus 3 ~~~~l~~~GG-------~~~~~yd~~~~~W~~-~~~~~-p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d 73 (315)
T 4asc_A 3 LQDLIFMISE-------EGAVAYDPAANECYC-ASLSS-QVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFD 73 (315)
T ss_dssp CEEEEEEEET-------TEEEEEETTTTEEEE-EECCC-CSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEE
T ss_pred cceEEEEEcC-------CceEEECCCCCeEec-CCCCC-CCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEec
Confidence 3568999999 689999999999987 44422 67899999999999999999962 1 22357799999
Q ss_pred CCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccC-CCCcccceEEEEecCCCceeeccccCCCCCCCCcceeee
Q 006334 110 LESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGE-GEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNV 188 (650)
Q Consensus 110 ~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~-~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~ 188 (650)
+.+++|+.+ ..+|.+|..|+++++ +++|||+||... .....++++++||+.+++|+.+. ++|.+|..|+++.
T Consensus 74 ~~~~~W~~~---~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~ 146 (315)
T 4asc_A 74 HLDSEWLGM---PPLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESD---PLPYVVYGHTVLS 146 (315)
T ss_dssp TTTTEEEEC---CCBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECC---CCSSCCBSCEEEE
T ss_pred CCCCeEEEC---CCCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECC---CCCCcccceeEEE
Confidence 999999997 578899999999988 699999999753 23567899999999999999887 8999999999999
Q ss_pred ecCEEEEEecc-CCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCc
Q 006334 189 IANRLFVYGGD-CGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCS 267 (650)
Q Consensus 189 ~~~~Iyv~GG~-~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~ 267 (650)
++++||++||. .....++++++||+.+++|+.++ ++|.+|..|++++++++|||+||.+.....+++++||+++++
T Consensus 147 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 147 HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELA---PMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECC---CCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCe
Confidence 99999999998 56678899999999999999987 788999999999999999999999887788999999999999
Q ss_pred EEEeecCCCCCCCcceeEEEEECCeEEEEcCCCCC----C----CCCCcEEEEecC
Q 006334 268 WSQLDTCGQQPQGRFSHAAVVTGSDIVIYGGCGED----E----RPLNELLVLQLG 315 (650)
Q Consensus 268 W~~l~~~~~~p~~R~~hsav~~~~~lyV~GG~~~~----~----~~~~d~~~l~l~ 315 (650)
|+.+.. +|.+|.+|++++++++|||+||.... . ...+++++||+.
T Consensus 224 W~~~~~---~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~ 276 (315)
T 4asc_A 224 WAPFEA---FPQERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEE 276 (315)
T ss_dssp EEEECC---CSSCCBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETT
T ss_pred EEECCC---CCCcccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCC
Confidence 999964 78899999999999999999997531 1 245788888886
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-38 Score=330.56 Aligned_cols=265 Identities=18% Similarity=0.237 Sum_probs=228.0
Q ss_pred CCcceeEEEEECCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCC--C----
Q 006334 26 PERWGHSACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNG--Y---- 99 (650)
Q Consensus 26 ~~R~ghs~v~~~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~--~---- 99 (650)
.+|.++.. ++.||+|||. ++++||+.+++|...+ +. .|.+|.+|+++..+++||||||... .
T Consensus 7 ~~r~~~~~---~~~i~~~GG~-------~~~~yd~~~~~W~~~~-~~-~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~ 74 (318)
T 2woz_A 7 IPRHGMFV---KDLILLVNDT-------AAVAYDPMENECYLTA-LA-EQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQ 74 (318)
T ss_dssp SCCCCCSE---EEEEEEECSS-------EEEEEETTTTEEEEEE-EC-TTSCSSEEEEECSSSCEEEEESSCC-------
T ss_pred ccccccee---cchhhhcccc-------ceEEECCCCCceeccc-CC-ccCCccceEEEEECCEEEEECCcccCccccCC
Confidence 45555433 4689999993 5899999999999843 32 2578999999999999999999631 1
Q ss_pred cCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCC
Q 006334 100 KKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPV 179 (650)
Q Consensus 100 ~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~ 179 (650)
...+++++||+.+++|+.+ ..+|.+|..|+++++ +++|||+||........++++++||+.+++|+.+. ++|.
T Consensus 75 ~~~~~~~~~d~~~~~W~~~---~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~ 147 (318)
T 2woz_A 75 PLQSYFFQLDNVSSEWVGL---PPLPSARCLFGLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVK---NLPI 147 (318)
T ss_dssp CCCBEEEEEETTTTEEEEC---SCBSSCBCSCEEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEEC---CCSS
T ss_pred CccccEEEEeCCCCcEEEC---CCCCccccccceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECC---CCCC
Confidence 2245699999999999997 578899999999988 69999999986445667899999999999999887 8999
Q ss_pred CCCcceeeeecCEEEEEeccC-CCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeE
Q 006334 180 PRDSHSSNVIANRLFVYGGDC-GDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDI 258 (650)
Q Consensus 180 ~R~~hs~v~~~~~Iyv~GG~~-~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv 258 (650)
+|..|++++++++||++||.. ....++++++||+.+++|+.++ ++|.+|..|++++++++|||+||.......+++
T Consensus 148 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 224 (318)
T 2woz_A 148 KVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLA---PMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASV 224 (318)
T ss_dssp CEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEEEEEETTEEEEEE
T ss_pred cccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECC---CCCCCcccceEEEECCEEEEEcCcCCCCccceE
Confidence 999999999999999999974 4567899999999999999997 788999999999999999999999887788999
Q ss_pred EEEECCCCcEEEeecCCCCCCCcceeEEEEECCeEEEEcCCCCC--------CCCCCcEEEEecC
Q 006334 259 WILNVSTCSWSQLDTCGQQPQGRFSHAAVVTGSDIVIYGGCGED--------ERPLNELLVLQLG 315 (650)
Q Consensus 259 ~~yD~~t~~W~~l~~~~~~p~~R~~hsav~~~~~lyV~GG~~~~--------~~~~~d~~~l~l~ 315 (650)
++||+++++|+.+.. +|.+|.+|++++++++|||+||.... ....+++++||+.
T Consensus 225 ~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~ 286 (318)
T 2woz_A 225 EAFDLKTNKWEVMTE---FPQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDD 286 (318)
T ss_dssp EEEETTTCCEEECCC---CSSCCBSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETT
T ss_pred EEEECCCCeEEECCC---CCCcccceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCC
Confidence 999999999999864 78899999999999999999998643 1346889999986
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-36 Score=351.22 Aligned_cols=282 Identities=17% Similarity=0.209 Sum_probs=233.2
Q ss_pred CCCCCCcceeEEEEECCEEEEEccCCCCcccceEEEEECCCCcEEEee-c--CCCCCCCCcceEEEEE--CCEEEEEccc
Q 006334 22 GFNPPERWGHSACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLA-T--TGQGPGPRDSHSAILW--GHKMIVFGGT 96 (650)
Q Consensus 22 g~~P~~R~ghs~v~~~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~-~--~g~~P~pR~~hsa~~~--~~~lyVfGG~ 96 (650)
...|+.|++|+++ +++.||||||... ..++++|+||+.+++|+.++ . .+..|.+|.+|+++++ +++|||+||.
T Consensus 383 ~~~p~rr~g~~~~-~~~~iyv~GG~~~-~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~ 460 (695)
T 2zwa_A 383 ECPINRKFGDVDV-AGNDVFYMGGSNP-YRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGR 460 (695)
T ss_dssp CCTTCCBSCEEEE-CSSCEEEECCBSS-SBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCB
T ss_pred CCCCCCceeEEEE-ECCEEEEECCCCC-CCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCC
Confidence 4567778877655 8999999999877 78899999999999999998 4 2345889999999999 9999999999
Q ss_pred CCCc-CcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccC
Q 006334 97 NGYK-KVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKG 175 (650)
Q Consensus 97 ~~~~-~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~ 175 (650)
+... .++++|+||+.+++|+.+ ..+|.+|+.|+++++.+++|||+||.+... ++++||+.+++|+.+...+
T Consensus 461 ~~~~~~~~dv~~yd~~t~~W~~~---~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~-----~v~~yd~~t~~W~~~~~~g 532 (695)
T 2zwa_A 461 KAPHQGLSDNWIFDMKTREWSMI---KSLSHTRFRHSACSLPDGNVLILGGVTEGP-----AMLLYNVTEEIFKDVTPKD 532 (695)
T ss_dssp SSTTCBCCCCEEEETTTTEEEEC---CCCSBCCBSCEEEECTTSCEEEECCBCSSC-----SEEEEETTTTEEEECCCSS
T ss_pred CCCCCccccEEEEeCCCCcEEEC---CCCCCCcccceEEEEcCCEEEEECCCCCCC-----CEEEEECCCCceEEccCCC
Confidence 8755 689999999999999998 678999999999987679999999985322 8999999999999988666
Q ss_pred CCCCCCCcceeeeec---CEEEEEeccCCC--CccCeEEEEECCCCc------EEEeeecCCCCCcccceEEEEEC-CEE
Q 006334 176 DIPVPRDSHSSNVIA---NRLFVYGGDCGD--QYHGDIDMLDMNSLT------WSRLAIIGSSPGVRAGHAAINIG-TKV 243 (650)
Q Consensus 176 ~lP~~R~~hs~v~~~---~~Iyv~GG~~~~--~~~n~v~~yd~~t~~------W~~i~~~g~~P~~R~~~s~v~~~-~~I 243 (650)
.+|.+|..|++++++ ++||++||.... ..++++++||+.+++ |+.+.. .++.+|.+|++++++ ++|
T Consensus 533 ~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~--~p~~~R~~~~~~~~~~~~i 610 (695)
T 2zwa_A 533 EFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQ--HPLFQRYGSQIKYITPRKL 610 (695)
T ss_dssp GGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEE--CGGGCCBSCEEEEEETTEE
T ss_pred CCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCC--CCCCCcccceEEEeCCCEE
Confidence 689999999988877 899999997543 678999999999999 899874 235789999999999 999
Q ss_pred EEEeccCCC---cccCeEEEEECCCCcEEEeecCCC----CCCCcceeEEEEECC-eEEEEcCCCC---CCCCCCcEEEE
Q 006334 244 YIIGGVGDK---HYYNDIWILNVSTCSWSQLDTCGQ----QPQGRFSHAAVVTGS-DIVIYGGCGE---DERPLNELLVL 312 (650)
Q Consensus 244 yI~GG~~~~---~~~~dv~~yD~~t~~W~~l~~~~~----~p~~R~~hsav~~~~-~lyV~GG~~~---~~~~~~d~~~l 312 (650)
||+||.+.. ...+++++||+.+++|+.+..... .+..+.+|+++.+++ +|||+||... .+...+++|.+
T Consensus 611 yv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg~~cfsfGt~~n~i~~l 690 (695)
T 2zwa_A 611 LIVGGTSPSGLFDRTNSIISLDPLSETLTSIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGGATCYGFGSVTNVGLKL 690 (695)
T ss_dssp EEECCBCSSCCCCTTTSEEEEETTTTEEEECCCCHHHHHHSCCCCSSCEEECC---CEEEECCEEECTTSCEEECCCEEE
T ss_pred EEECCccCCCCCCCCCeEEEEECCCCeEEEeeccccccCCCCccceeeeEEEeCCCEEEEEeCCccCcCccccccceEEE
Confidence 999998754 368899999999999997643211 122577899998876 9999999532 23334577777
Q ss_pred ecC
Q 006334 313 QLG 315 (650)
Q Consensus 313 ~l~ 315 (650)
++.
T Consensus 691 dl~ 693 (695)
T 2zwa_A 691 IAI 693 (695)
T ss_dssp EEC
T ss_pred EEE
Confidence 664
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-34 Score=304.00 Aligned_cols=246 Identities=20% Similarity=0.262 Sum_probs=200.2
Q ss_pred CCeEEeeecCCCCC-CCcceeEEEEECCEEEEEccC-C----CCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEE
Q 006334 12 AAMWLYPKVLGFNP-PERWGHSACYSHGAVYIFGGC-C----GGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAIL 85 (650)
Q Consensus 12 ~~~W~~~~~~g~~P-~~R~ghs~v~~~~~IyvfGG~-~----~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~ 85 (650)
+.+|..+. ..| .+|.+|++++++++||||||. . ....++++|+||+.+++|+.++.+. |.+|.+|++++
T Consensus 42 ~~~W~~~~---~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~--p~~r~~~~~~~ 116 (357)
T 2uvk_A 42 DKKWTALA---AFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHA--PMGMAGHVTFV 116 (357)
T ss_dssp SCCEEECC---CCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCC--SSCCSSEEEEE
T ss_pred CCCeeECC---CCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCC--CcccccceEEE
Confidence 57899543 356 799999999999999999998 3 2456899999999999999998874 58999999999
Q ss_pred ECCEEEEEcccCCCc----------------------------------CcCeEEEEECCCCcEEeeecCCCCCCCCcc-
Q 006334 86 WGHKMIVFGGTNGYK----------------------------------KVNDLHILDLESKEWMRPECRGAPPSPRES- 130 (650)
Q Consensus 86 ~~~~lyVfGG~~~~~----------------------------------~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~- 130 (650)
.+++|||+||.+... .++++++||+.+++|+.+ ..+|.+|..
T Consensus 117 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~---~~~p~~~~~~ 193 (357)
T 2uvk_A 117 HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYA---GESPWYGTAG 193 (357)
T ss_dssp ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEE---EECSSCCCBS
T ss_pred ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEEC---CCCCCCCccc
Confidence 999999999986532 468999999999999998 456665555
Q ss_pred cEEEEEcCCEEEEEccccCCCCcccceEEEEec--CCCceeeccccCCCCCC--CCcceeeeecCEEEEEeccCC-----
Q 006334 131 HTATLVGDDKMVIFGGSGEGEANYLNDLHVLDL--KTMRWASPAVKGDIPVP--RDSHSSNVIANRLFVYGGDCG----- 201 (650)
Q Consensus 131 hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~--~t~~Wt~i~~~~~lP~~--R~~hs~v~~~~~Iyv~GG~~~----- 201 (650)
|+++++ +++|||+||... .....+++++||+ .+++|+.+. .+|.+ |..|+++.++++|||+||.+.
T Consensus 194 ~~~~~~-~~~iyv~GG~~~-~~~~~~~v~~~d~d~~~~~W~~~~---~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~ 268 (357)
T 2uvk_A 194 AAVVNK-GDKTWLINGEAK-PGLRTDAVFELDFTGNNLKWNKLA---PVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRE 268 (357)
T ss_dssp CEEEEE-TTEEEEECCEEE-TTEECCCEEEEECC---CEEEECC---CSSTTTCCBSCEEEEETTEEEEECCEECTTHHH
T ss_pred ccEEEE-CCEEEEEeeecC-CCcccCceEEEEecCCCCcEEecC---CCCCCcccccceEEEECCEEEEEcCccccCCcc
Confidence 888777 799999999853 2356789999987 899999886 55544 667889999999999999642
Q ss_pred ------------CCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCC-cccCeEEEEECCCCcE
Q 006334 202 ------------DQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDK-HYYNDIWILNVSTCSW 268 (650)
Q Consensus 202 ------------~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~-~~~~dv~~yD~~t~~W 268 (650)
...++++++||+.+++|+.+. .+|.+|..|+++.++++|||+||.+.. ..++++++|++++++|
T Consensus 269 ~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~ 345 (357)
T 2uvk_A 269 NYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSG---ELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKV 345 (357)
T ss_dssp HHHTTCSSTTTTCCCEECCEEEECC---CEEEE---ECSSCCBSSEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSC
T ss_pred cccccceeccccccceeeEEEEecCCCceeeCC---CCCCCcccceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEe
Confidence 223468999999999999997 688899999999999999999999754 4579999999999999
Q ss_pred EEeec
Q 006334 269 SQLDT 273 (650)
Q Consensus 269 ~~l~~ 273 (650)
..+..
T Consensus 346 ~~~~~ 350 (357)
T 2uvk_A 346 TVQNL 350 (357)
T ss_dssp EEEC-
T ss_pred Eeeec
Confidence 99864
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-30 Score=301.23 Aligned_cols=233 Identities=15% Similarity=0.210 Sum_probs=200.2
Q ss_pred CCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEECCCCcEEeee-c--CCCCCCCCcccEEEEEc-CCEEEEEcccc
Q 006334 73 QGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPE-C--RGAPPSPRESHTATLVG-DDKMVIFGGSG 148 (650)
Q Consensus 73 ~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~-~--~~~~P~~R~~hs~~~~~-~~~Lyv~GG~~ 148 (650)
..|.+|++++++ ++++||||||.+. ..++++|+||+.+++|+.+. . .+.+|.+|.+|+++++. +++|||+||.+
T Consensus 384 ~~p~rr~g~~~~-~~~~iyv~GG~~~-~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~ 461 (695)
T 2zwa_A 384 CPINRKFGDVDV-AGNDVFYMGGSNP-YRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRK 461 (695)
T ss_dssp CTTCCBSCEEEE-CSSCEEEECCBSS-SBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBS
T ss_pred CCCCCceeEEEE-ECCEEEEECCCCC-CCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCC
Confidence 336677776554 8999999999988 77899999999999999986 2 24589999999999995 69999999985
Q ss_pred CCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee-cCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCC
Q 006334 149 EGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI-ANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSS 227 (650)
Q Consensus 149 ~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~-~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~ 227 (650)
. ....++++|+||+.+++|+.+. ++|.+|+.|+++++ +++|||+||.+... ++++||+.+++|+.+...+.+
T Consensus 462 ~-~~~~~~dv~~yd~~t~~W~~~~---~~p~~R~~h~~~~~~~~~iyv~GG~~~~~---~v~~yd~~t~~W~~~~~~g~~ 534 (695)
T 2zwa_A 462 A-PHQGLSDNWIFDMKTREWSMIK---SLSHTRFRHSACSLPDGNVLILGGVTEGP---AMLLYNVTEEIFKDVTPKDEF 534 (695)
T ss_dssp S-TTCBCCCCEEEETTTTEEEECC---CCSBCCBSCEEEECTTSCEEEECCBCSSC---SEEEEETTTTEEEECCCSSGG
T ss_pred C-CCCccccEEEEeCCCCcEEECC---CCCCCcccceEEEEcCCEEEEECCCCCCC---CEEEEECCCCceEEccCCCCC
Confidence 3 3347899999999999999886 89999999999996 99999999987655 999999999999999976668
Q ss_pred CCcccceEEEEEC---CEEEEEeccCC--CcccCeEEEEECCCCc------EEEeecCCCCCCCcceeEEEEEC-CeEEE
Q 006334 228 PGVRAGHAAINIG---TKVYIIGGVGD--KHYYNDIWILNVSTCS------WSQLDTCGQQPQGRFSHAAVVTG-SDIVI 295 (650)
Q Consensus 228 P~~R~~~s~v~~~---~~IyI~GG~~~--~~~~~dv~~yD~~t~~------W~~l~~~~~~p~~R~~hsav~~~-~~lyV 295 (650)
|.+|.+|++++++ ++|||+||... ...++++|+||+.+++ |+.+... .+.+|++|++++++ ++|||
T Consensus 535 p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~--p~~~R~~~~~~~~~~~~iyv 612 (695)
T 2zwa_A 535 FQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQH--PLFQRYGSQIKYITPRKLLI 612 (695)
T ss_dssp GGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEEC--GGGCCBSCEEEEEETTEEEE
T ss_pred CCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCC--CCCCcccceEEEeCCCEEEE
Confidence 9999999988877 89999999854 3678999999999999 8988752 25789999999998 99999
Q ss_pred EcCCCCCC--CCCCcEEEEecCC
Q 006334 296 YGGCGEDE--RPLNELLVLQLGA 316 (650)
Q Consensus 296 ~GG~~~~~--~~~~d~~~l~l~~ 316 (650)
+||..... ...+++++||+..
T Consensus 613 ~GG~~~~~~~~~~~~v~~yd~~t 635 (695)
T 2zwa_A 613 VGGTSPSGLFDRTNSIISLDPLS 635 (695)
T ss_dssp ECCBCSSCCCCTTTSEEEEETTT
T ss_pred ECCccCCCCCCCCCeEEEEECCC
Confidence 99986544 3678999999973
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=99.97 E-value=8.1e-31 Score=302.69 Aligned_cols=274 Identities=13% Similarity=0.132 Sum_probs=215.4
Q ss_pred CCCcCCCeEEeeecCCCCCCCcceeEEEEE--CCEEEEEccCCCCc------ccceEEEEECCCCcEEEeecCCCCCCCC
Q 006334 7 ENAKRAAMWLYPKVLGFNPPERWGHSACYS--HGAVYIFGGCCGGL------HFGDVLMLNLDTMVWSTLATTGQGPGPR 78 (650)
Q Consensus 7 ~~~~~~~~W~~~~~~g~~P~~R~ghs~v~~--~~~IyvfGG~~~~~------~~~dv~~yD~~t~sW~~l~~~g~~P~pR 78 (650)
..++.+++|..+. |.||.+|+++++ +++||++||..... ..+++++||+.+++|+.+..+ |.+|
T Consensus 170 ~~dp~~~~W~~~~-----~~P~~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~---~~~~ 241 (656)
T 1k3i_A 170 APQPGLGRWGPTI-----DLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVT---VTKH 241 (656)
T ss_dssp CCCTTSCEEEEEE-----ECSSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEE---ECSC
T ss_pred cCCCCCCeeeeec-----cCCCCceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCccc---CCCC
Confidence 4677889999643 356677777777 89999999976422 345899999999999998876 4455
Q ss_pred cce--EEEE-ECCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCccc
Q 006334 79 DSH--SAIL-WGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYL 155 (650)
Q Consensus 79 ~~h--sa~~-~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~ 155 (650)
..+ ++++ .+++|||+||.+.. ++++||+.+++|+++ ..++.+|.+|+++++.+++|||+||..+ ....+
T Consensus 242 ~~~~~~~~~~~~g~lyv~GG~~~~----~v~~yd~~t~~W~~~---~~~~~~R~~~s~~~~~dg~iyv~GG~~~-~~~~~ 313 (656)
T 1k3i_A 242 DMFCPGISMDGNGQIVVTGGNDAK----KTSLYDSSSDSWIPG---PDMQVARGYQSSATMSDGRVFTIGGSWS-GGVFE 313 (656)
T ss_dssp CCSSCEEEECTTSCEEEECSSSTT----CEEEEEGGGTEEEEC---CCCSSCCSSCEEEECTTSCEEEECCCCC-SSSCC
T ss_pred CCccccccCCCCCCEEEeCCCCCC----ceEEecCcCCceeEC---CCCCccccccceEEecCCeEEEEeCccc-CCccc
Confidence 444 3444 58999999998653 799999999999997 5789999999999886799999999633 34478
Q ss_pred ceEEEEecCCCceeeccccC--CCCCC-----------------------------------------------------
Q 006334 156 NDLHVLDLKTMRWASPAVKG--DIPVP----------------------------------------------------- 180 (650)
Q Consensus 156 ~dv~~yd~~t~~Wt~i~~~~--~lP~~----------------------------------------------------- 180 (650)
+++++||+.+++|+.+.... +++..
T Consensus 314 ~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~ 393 (656)
T 1k3i_A 314 KNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRG 393 (656)
T ss_dssp CCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTE
T ss_pred ccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccc
Confidence 89999999999999863211 11111
Q ss_pred ----CCcceeee---ecCEEEEEeccC---CCCccC---eEEEEECCCCcEEEeeecCCCCCcccceEEEEE-CCEEEEE
Q 006334 181 ----RDSHSSNV---IANRLFVYGGDC---GDQYHG---DIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINI-GTKVYII 246 (650)
Q Consensus 181 ----R~~hs~v~---~~~~Iyv~GG~~---~~~~~n---~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~-~~~IyI~ 246 (650)
+..++++. ++++||++||.. +...++ ++++||+.+++|..+. .+.+|.+|..|+++++ +++|||+
T Consensus 394 ~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~-~~~mp~~R~~~~~~~l~~g~i~v~ 472 (656)
T 1k3i_A 394 VAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFA-SNGLYFARTFHTSVVLPDGSTFIT 472 (656)
T ss_dssp ECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEEC-TTCCSSCCBSCEEEECTTSCEEEE
T ss_pred cCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEc-cCCCCCCcccCCeEECCCCCEEEE
Confidence 22344443 479999999954 233455 7899999999999986 3468899999999888 8999999
Q ss_pred eccCC------CcccCeEEEEECCCCcEEEeecCCCCCCCcceeEEEEE--CCeEEEEcCCC
Q 006334 247 GGVGD------KHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVT--GSDIVIYGGCG 300 (650)
Q Consensus 247 GG~~~------~~~~~dv~~yD~~t~~W~~l~~~~~~p~~R~~hsav~~--~~~lyV~GG~~ 300 (650)
||.+. .....++++||+++++|+.+.. ++.+|.+|+++++ +++|||+||..
T Consensus 473 GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~---~~~~R~~hs~a~ll~dg~v~v~GG~~ 531 (656)
T 1k3i_A 473 GGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNP---NSIVRVYHSISLLLPDGRVFNGGGGL 531 (656)
T ss_dssp CCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCC---CSSCCCTTEEEEECTTSCEEEEECCC
T ss_pred CCcccCcCcCCCCcccceEEEcCCCCceeecCC---CCCccccccHhhcCCCcEEEecCCCC
Confidence 99753 3557899999999999999864 7889999998888 99999999953
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=259.89 Aligned_cols=243 Identities=16% Similarity=0.194 Sum_probs=186.7
Q ss_pred EEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEcccCCCc------CcCeEEEEECCCCcEEeeecCCCCCC
Q 006334 55 VLMLNLDTMVWSTLATTGQGPGPRDSHSAILW--GHKMIVFGGTNGYK------KVNDLHILDLESKEWMRPECRGAPPS 126 (650)
Q Consensus 55 v~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~--~~~lyVfGG~~~~~------~~ndv~~yD~~t~~W~~l~~~~~~P~ 126 (650)
+..||+.+++|..+..+ ||..+.++++ +++|||+||.+... ..+++++||+.+++|+.+. .+|.
T Consensus 168 ~~~~dp~~~~W~~~~~~-----P~~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~---~~~~ 239 (656)
T 1k3i_A 168 YTAPQPGLGRWGPTIDL-----PIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRT---VTVT 239 (656)
T ss_dssp CCCCCTTSCEEEEEEEC-----SSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCE---EEEC
T ss_pred cccCCCCCCeeeeeccC-----CCCceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCc---ccCC
Confidence 44567889999988765 5566666666 99999999986532 2468999999999999873 3455
Q ss_pred CCccc--EEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee-cCEEEEEec-cCCC
Q 006334 127 PRESH--TATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI-ANRLFVYGG-DCGD 202 (650)
Q Consensus 127 ~R~~h--s~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~-~~~Iyv~GG-~~~~ 202 (650)
+|..+ +++++.+++||++||... .++++||+.+++|+.+. ++|.+|..|+++.+ +++||++|| .++.
T Consensus 240 ~~~~~~~~~~~~~~g~lyv~GG~~~------~~v~~yd~~t~~W~~~~---~~~~~R~~~s~~~~~dg~iyv~GG~~~~~ 310 (656)
T 1k3i_A 240 KHDMFCPGISMDGNGQIVVTGGNDA------KKTSLYDSSSDSWIPGP---DMQVARGYQSSATMSDGRVFTIGGSWSGG 310 (656)
T ss_dssp SCCCSSCEEEECTTSCEEEECSSST------TCEEEEEGGGTEEEECC---CCSSCCSSCEEEECTTSCEEEECCCCCSS
T ss_pred CCCCccccccCCCCCCEEEeCCCCC------CceEEecCcCCceeECC---CCCccccccceEEecCCeEEEEeCcccCC
Confidence 55444 456566899999999843 27999999999999876 89999999999999 999999999 5666
Q ss_pred CccCeEEEEECCCCcEEEeeecC--CCCC---------------------------------------------------
Q 006334 203 QYHGDIDMLDMNSLTWSRLAIIG--SSPG--------------------------------------------------- 229 (650)
Q Consensus 203 ~~~n~v~~yd~~t~~W~~i~~~g--~~P~--------------------------------------------------- 229 (650)
..++++++||+.+++|+.++..+ +++.
T Consensus 311 ~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~ 390 (656)
T 1k3i_A 311 VFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQS 390 (656)
T ss_dssp SCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEE
T ss_pred cccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCcccc
Confidence 68899999999999999973110 1111
Q ss_pred ------cccceEEEE---ECCEEEEEeccCC---CcccC---eEEEEECCCCcEEEeecCCCCCCCcceeEEEEE-CCeE
Q 006334 230 ------VRAGHAAIN---IGTKVYIIGGVGD---KHYYN---DIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVT-GSDI 293 (650)
Q Consensus 230 ------~R~~~s~v~---~~~~IyI~GG~~~---~~~~~---dv~~yD~~t~~W~~l~~~~~~p~~R~~hsav~~-~~~l 293 (650)
.+..++++. .+++|||+||... ...++ ++++||+.+++|..+. .+.+|.+|.+|+++++ +++|
T Consensus 391 ~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~-~~~mp~~R~~~~~~~l~~g~i 469 (656)
T 1k3i_A 391 NRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFA-SNGLYFARTFHTSVVLPDGST 469 (656)
T ss_dssp TTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEEC-TTCCSSCCBSCEEEECTTSCE
T ss_pred ccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEc-cCCCCCCcccCCeEECCCCCE
Confidence 122344443 4799999999742 33444 7999999999999986 2358999999999988 9999
Q ss_pred EEEcCCCCC-----CCCCCcEEEEecC
Q 006334 294 VIYGGCGED-----ERPLNELLVLQLG 315 (650)
Q Consensus 294 yV~GG~~~~-----~~~~~d~~~l~l~ 315 (650)
||+||.... ....+++++||..
T Consensus 470 ~v~GG~~~~~~~~~~~~~~~v~~ydp~ 496 (656)
T 1k3i_A 470 FITGGQRRGIPFEDSTPVFTPEIYVPE 496 (656)
T ss_dssp EEECCBSBCCTTCCCSBCCCCEEEEGG
T ss_pred EEECCcccCcCcCCCCcccceEEEcCC
Confidence 999997532 2346778888875
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.02 E-value=0.0078 Score=62.26 Aligned_cols=246 Identities=11% Similarity=0.020 Sum_probs=139.9
Q ss_pred CCCcceeEEEEECCEEEEEccCCCCcccceEEEEECCCCcEEE-eecCCCCCCCCcceEEEE-ECCEEEEEcccCCCcCc
Q 006334 25 PPERWGHSACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMVWST-LATTGQGPGPRDSHSAIL-WGHKMIVFGGTNGYKKV 102 (650)
Q Consensus 25 P~~R~ghs~v~~~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~-l~~~g~~P~pR~~hsa~~-~~~~lyVfGG~~~~~~~ 102 (650)
+.....+.+++.++++|+.... .+.+.++|+.+.+... ++.. ..-+.+++ .++++||.... .
T Consensus 41 ~lg~~~~~i~~~~~~lyv~~~~-----~~~v~viD~~t~~~~~~i~~~------~~p~~i~~~~~g~lyv~~~~-----~ 104 (328)
T 3dsm_A 41 KLGDVAQSMVIRDGIGWIVVNN-----SHVIFAIDINTFKEVGRITGF------TSPRYIHFLSDEKAYVTQIW-----D 104 (328)
T ss_dssp CCBSCEEEEEEETTEEEEEEGG-----GTEEEEEETTTCCEEEEEECC------SSEEEEEEEETTEEEEEEBS-----C
T ss_pred ccCccceEEEEECCEEEEEEcC-----CCEEEEEECcccEEEEEcCCC------CCCcEEEEeCCCeEEEEECC-----C
Confidence 3445567778889999997752 4679999999887633 3221 22234444 68899997643 3
Q ss_pred CeEEEEECCCCcEEe-eecCCCCCC-CCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCC
Q 006334 103 NDLHILDLESKEWMR-PECRGAPPS-PRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVP 180 (650)
Q Consensus 103 ndv~~yD~~t~~W~~-l~~~~~~P~-~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~ 180 (650)
+.++++|+.+.+-.. +.. +.... ...-..+++ .+++||+..-. .-+.+.++|+.+++....-..+..|
T Consensus 105 ~~v~~iD~~t~~~~~~i~~-g~~~~~~~~p~~i~~-~~~~lyv~~~~------~~~~v~viD~~t~~~~~~i~~g~~p-- 174 (328)
T 3dsm_A 105 YRIFIINPKTYEITGYIEC-PDMDMESGSTEQMVQ-YGKYVYVNCWS------YQNRILKIDTETDKVVDELTIGIQP-- 174 (328)
T ss_dssp SEEEEEETTTTEEEEEEEC-TTCCTTTCBCCCEEE-ETTEEEEEECT------TCCEEEEEETTTTEEEEEEECSSCB--
T ss_pred CeEEEEECCCCeEEEEEEc-CCccccCCCcceEEE-ECCEEEEEcCC------CCCEEEEEECCCCeEEEEEEcCCCc--
Confidence 689999999887543 221 12000 001223333 47899987420 1246999999988765422112211
Q ss_pred CCcceeee-ecCEEEEEeccCCCCc-----cCeEEEEECCCCcEEEeeecCCCCCcccceEEEEE--CCEEEEEeccCCC
Q 006334 181 RDSHSSNV-IANRLFVYGGDCGDQY-----HGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINI--GTKVYIIGGVGDK 252 (650)
Q Consensus 181 R~~hs~v~-~~~~Iyv~GG~~~~~~-----~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~--~~~IyI~GG~~~~ 252 (650)
+.++. -++++|+......... .+.++++|+.+.+....-. .+....-..++.. ++.+|+..+
T Consensus 175 ---~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~---~~~g~~p~~la~~~d~~~lyv~~~---- 244 (328)
T 3dsm_A 175 ---TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFK---FKLGDWPSEVQLNGTRDTLYWINN---- 244 (328)
T ss_dssp ---CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEE---CCTTCCCEEEEECTTSCEEEEESS----
T ss_pred ---cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEe---cCCCCCceeEEEecCCCEEEEEcc----
Confidence 22332 3578887754221111 3689999999887664321 2222222344444 457888732
Q ss_pred cccCeEEEEECCCCcEEEeecCCCCCC-CcceeEEEEE--CCeEEEEcCCCCCCCCCCcEEEEecC
Q 006334 253 HYYNDIWILNVSTCSWSQLDTCGQQPQ-GRFSHAAVVT--GSDIVIYGGCGEDERPLNELLVLQLG 315 (650)
Q Consensus 253 ~~~~dv~~yD~~t~~W~~l~~~~~~p~-~R~~hsav~~--~~~lyV~GG~~~~~~~~~d~~~l~l~ 315 (650)
.+++||+.+.+...... .+. ...-.++++. ++.|||....+. ...+.+++++..
T Consensus 245 ----~v~~~d~~t~~~~~~~~---~~~~~~~p~gi~vdp~~g~lyva~~~~y--~~~~~V~v~d~~ 301 (328)
T 3dsm_A 245 ----DIWRMPVEADRVPVRPF---LEFRDTKYYGLTVNPNNGEVYVADAIDY--QQQGIVYRYSPQ 301 (328)
T ss_dssp ----SEEEEETTCSSCCSSCS---BCCCSSCEEEEEECTTTCCEEEEECTTS--SSEEEEEEECTT
T ss_pred ----EEEEEECCCCceeeeee---ecCCCCceEEEEEcCCCCeEEEEccccc--ccCCEEEEECCC
Confidence 79999999877532111 111 2333455553 578999862211 123467777664
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=97.82 E-value=0.019 Score=59.22 Aligned_cols=226 Identities=9% Similarity=0.040 Sum_probs=131.0
Q ss_pred cceEEEEECCCCcEEEeecC--CCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEECCCCcEEe-eecCCCCCCCC
Q 006334 52 FGDVLMLNLDTMVWSTLATT--GQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMR-PECRGAPPSPR 128 (650)
Q Consensus 52 ~~dv~~yD~~t~sW~~l~~~--g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~-l~~~~~~P~~R 128 (650)
.+.+..||+.++++...... ...+.....+.+++.++++|+.... .+.+.++|+.+.+-.. +. .. .
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~-----~~~v~viD~~t~~~~~~i~---~~---~ 84 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNN-----SHVIFAIDINTFKEVGRIT---GF---T 84 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGG-----GTEEEEEETTTCCEEEEEE---CC---S
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcC-----CCEEEEEECcccEEEEEcC---CC---C
Confidence 56899999999987653210 0113334456677789999998742 3679999999887633 31 11 2
Q ss_pred cccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceee-ccccCCCC-CCCCcceeeeecCEEEEEeccCCCCccC
Q 006334 129 ESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWAS-PAVKGDIP-VPRDSHSSNVIANRLFVYGGDCGDQYHG 206 (650)
Q Consensus 129 ~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~-i~~~~~lP-~~R~~hs~v~~~~~Iyv~GG~~~~~~~n 206 (650)
.-..+++..++++|+.... .+.+.++|+.+.+... +. .+... ....-+.++..++++|+..-. ..+
T Consensus 85 ~p~~i~~~~~g~lyv~~~~-------~~~v~~iD~~t~~~~~~i~-~g~~~~~~~~p~~i~~~~~~lyv~~~~----~~~ 152 (328)
T 3dsm_A 85 SPRYIHFLSDEKAYVTQIW-------DYRIFIINPKTYEITGYIE-CPDMDMESGSTEQMVQYGKYVYVNCWS----YQN 152 (328)
T ss_dssp SEEEEEEEETTEEEEEEBS-------CSEEEEEETTTTEEEEEEE-CTTCCTTTCBCCCEEEETTEEEEEECT----TCC
T ss_pred CCcEEEEeCCCeEEEEECC-------CCeEEEEECCCCeEEEEEE-cCCccccCCCcceEEEECCEEEEEcCC----CCC
Confidence 2234444356899987643 2469999998876542 22 11200 000222344467899988421 236
Q ss_pred eEEEEECCCCcEEEeeecCCCCCcccceEEEE-ECCEEEEEeccCCCc-c----cCeEEEEECCCCcEEEeecCCCCCCC
Q 006334 207 DIDMLDMNSLTWSRLAIIGSSPGVRAGHAAIN-IGTKVYIIGGVGDKH-Y----YNDIWILNVSTCSWSQLDTCGQQPQG 280 (650)
Q Consensus 207 ~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~-~~~~IyI~GG~~~~~-~----~~dv~~yD~~t~~W~~l~~~~~~p~~ 280 (650)
.+.++|+.+.+....-..+..| +.++. -++++|+..-..... . ...++++|+.+.+....-. .+..
T Consensus 153 ~v~viD~~t~~~~~~i~~g~~p-----~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~---~~~g 224 (328)
T 3dsm_A 153 RILKIDTETDKVVDELTIGIQP-----TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFK---FKLG 224 (328)
T ss_dssp EEEEEETTTTEEEEEEECSSCB-----CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEE---CCTT
T ss_pred EEEEEECCCCeEEEEEEcCCCc-----cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEe---cCCC
Confidence 8999999988765433222222 22222 357887774321111 1 3689999999987653221 2222
Q ss_pred cceeEEEEE--CCeEEEEcCCCCCCCCCCcEEEEecCCC
Q 006334 281 RFSHAAVVT--GSDIVIYGGCGEDERPLNELLVLQLGAE 317 (650)
Q Consensus 281 R~~hsav~~--~~~lyV~GG~~~~~~~~~d~~~l~l~~~ 317 (650)
..-..+++. ++.||+..+ .++++|....
T Consensus 225 ~~p~~la~~~d~~~lyv~~~---------~v~~~d~~t~ 254 (328)
T 3dsm_A 225 DWPSEVQLNGTRDTLYWINN---------DIWRMPVEAD 254 (328)
T ss_dssp CCCEEEEECTTSCEEEEESS---------SEEEEETTCS
T ss_pred CCceeEEEecCCCEEEEEcc---------EEEEEECCCC
Confidence 222345555 456777632 6888888643
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.073 Score=53.17 Aligned_cols=201 Identities=13% Similarity=0.146 Sum_probs=122.9
Q ss_pred CcceEEEEECCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccce
Q 006334 78 RDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLND 157 (650)
Q Consensus 78 R~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~d 157 (650)
-+-+.+.+.++.||+-.|..+ .+.+.++|+.+.+-..- ..++..-++.+++.. +++||+.... .+.
T Consensus 21 ~ftqGL~~~~~~LyestG~~g---~S~v~~vD~~tgkv~~~---~~l~~~~fgeGi~~~-~~~ly~ltw~-------~~~ 86 (243)
T 3mbr_X 21 AFTEGLFYLRGHLYESTGETG---RSSVRKVDLETGRILQR---AEVPPPYFGAGIVAW-RDRLIQLTWR-------NHE 86 (243)
T ss_dssp CCEEEEEEETTEEEEEECCTT---SCEEEEEETTTCCEEEE---EECCTTCCEEEEEEE-TTEEEEEESS-------SSE
T ss_pred cccccEEEECCEEEEECCCCC---CceEEEEECCCCCEEEE---EeCCCCcceeEEEEe-CCEEEEEEee-------CCE
Confidence 455678888999999888644 35789999999876552 233444445556665 6999998654 257
Q ss_pred EEEEecCCCceeeccccCCCCCCCCcceeeeecCEEEEEeccCCCCccCeEEEEECCCCcEE-EeeecCCCCCc-ccceE
Q 006334 158 LHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWS-RLAIIGSSPGV-RAGHA 235 (650)
Q Consensus 158 v~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~-~i~~~g~~P~~-R~~~s 235 (650)
+++||.++.+-.. .++.+..+..++..++++|+.-| .+.++.+|+.+.+-. .+... .-+.+ +.---
T Consensus 87 v~v~D~~tl~~~~-----ti~~~~~Gwglt~dg~~L~vSdg------s~~l~~iDp~t~~~~~~I~V~-~~g~~~~~lNe 154 (243)
T 3mbr_X 87 GFVYDLATLTPRA-----RFRYPGEGWALTSDDSHLYMSDG------TAVIRKLDPDTLQQVGSIKVT-AGGRPLDNLNE 154 (243)
T ss_dssp EEEEETTTTEEEE-----EEECSSCCCEEEECSSCEEEECS------SSEEEEECTTTCCEEEEEECE-ETTEECCCEEE
T ss_pred EEEEECCcCcEEE-----EEeCCCCceEEeeCCCEEEEECC------CCeEEEEeCCCCeEEEEEEEc-cCCccccccee
Confidence 9999998765443 22223355666666778888755 258999999987644 33321 11222 11123
Q ss_pred EEEECCEEEEEeccCCCcccCeEEEEECCCCc---EEEeecCC-CC-----CCCcceeEEEEE--CCeEEEEcCCCCCCC
Q 006334 236 AINIGTKVYIIGGVGDKHYYNDIWILNVSTCS---WSQLDTCG-QQ-----PQGRFSHAAVVT--GSDIVIYGGCGEDER 304 (650)
Q Consensus 236 ~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~---W~~l~~~~-~~-----p~~R~~hsav~~--~~~lyV~GG~~~~~~ 304 (650)
+...+++||+- .+ ..++|.+.|+++.+ |..+..+- .. +..-.--+.+.. .+.|||.|-.
T Consensus 155 Le~~~G~lyan--vw---~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~----- 224 (243)
T 3mbr_X 155 LEWVNGELLAN--VW---LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR----- 224 (243)
T ss_dssp EEEETTEEEEE--ET---TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT-----
T ss_pred eEEeCCEEEEE--EC---CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC-----
Confidence 45568888854 21 24689999999986 44433211 01 111122344444 4678888753
Q ss_pred CCCcEEEEecC
Q 006334 305 PLNELLVLQLG 315 (650)
Q Consensus 305 ~~~d~~~l~l~ 315 (650)
-..+|.+.+.
T Consensus 225 -wp~~~~v~~~ 234 (243)
T 3mbr_X 225 -WPMLYEIRLT 234 (243)
T ss_dssp -CSEEEEEEEC
T ss_pred -CCcEEEEEEe
Confidence 3566666653
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=97.18 E-value=0.29 Score=50.73 Aligned_cols=224 Identities=17% Similarity=0.258 Sum_probs=124.9
Q ss_pred ceeEEEEECCEEEEEccCCCCcccceEEEEECCCCc--EEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEE
Q 006334 29 WGHSACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMV--WSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLH 106 (650)
Q Consensus 29 ~ghs~v~~~~~IyvfGG~~~~~~~~dv~~yD~~t~s--W~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~ 106 (650)
...+.++.++.||+... ...++.||..+++ |+.-... ....+.++.++.||+... ...++
T Consensus 95 ~~~~~~~~~~~v~v~~~------~g~l~a~d~~tG~~~W~~~~~~------~~~~~p~~~~~~v~v~~~------~g~l~ 156 (376)
T 3q7m_A 95 LSGGVTVSGGHVYIGSE------KAQVYALNTSDGTVAWQTKVAG------EALSRPVVSDGLVLIHTS------NGQLQ 156 (376)
T ss_dssp EEEEEEEETTEEEEEET------TSEEEEEETTTCCEEEEEECSS------CCCSCCEEETTEEEEECT------TSEEE
T ss_pred cccCceEeCCEEEEEcC------CCEEEEEECCCCCEEEEEeCCC------ceEcCCEEECCEEEEEcC------CCeEE
Confidence 33445667889998543 2479999998764 7653221 112233456888887442 24799
Q ss_pred EEECCCCc--EEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCC--ceeeccccCCCCCCC-
Q 006334 107 ILDLESKE--WMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTM--RWASPAVKGDIPVPR- 181 (650)
Q Consensus 107 ~yD~~t~~--W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~--~Wt~i~~~~~lP~~R- 181 (650)
.||..+.+ |+.-. .......+...+.++. ++.+|+ |..+ ..++.||+.+. .|+.-. ..+...
T Consensus 157 ~~d~~tG~~~W~~~~-~~~~~~~~~~~~~~~~-~~~v~~-g~~~-------g~l~~~d~~tG~~~w~~~~---~~~~~~~ 223 (376)
T 3q7m_A 157 ALNEADGAVKWTVNL-DMPSLSLRGESAPTTA-FGAAVV-GGDN-------GRVSAVLMEQGQMIWQQRI---SQATGST 223 (376)
T ss_dssp EEETTTCCEEEEEEC-CC-----CCCCCCEEE-TTEEEE-CCTT-------TEEEEEETTTCCEEEEEEC---CC-----
T ss_pred EEECCCCcEEEEEeC-CCCceeecCCCCcEEE-CCEEEE-EcCC-------CEEEEEECCCCcEEEEEec---ccCCCCc
Confidence 99998875 87631 1111111111222333 577666 3321 35888998765 576422 111111
Q ss_pred -------CcceeeeecCEEEEEeccCCCCccCeEEEEECCCCc--EEEeeecCCCCCcccceEEEEECCEEEEEeccCCC
Q 006334 182 -------DSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLT--WSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDK 252 (650)
Q Consensus 182 -------~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~--W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~ 252 (650)
.....+..++.+|+.+. ...++.||+.+.+ |+.-. . .....+..++.||+...
T Consensus 224 ~~~~~~~~~~~p~~~~~~v~~~~~------~g~l~~~d~~tG~~~w~~~~-----~---~~~~~~~~~~~l~~~~~---- 285 (376)
T 3q7m_A 224 EIDRLSDVDTTPVVVNGVVFALAY------NGNLTALDLRSGQIMWKREL-----G---SVNDFIVDGNRIYLVDQ---- 285 (376)
T ss_dssp ------CCCCCCEEETTEEEEECT------TSCEEEEETTTCCEEEEECC-----C---CEEEEEEETTEEEEEET----
T ss_pred ccccccccCCCcEEECCEEEEEec------CcEEEEEECCCCcEEeeccC-----C---CCCCceEECCEEEEEcC----
Confidence 22334455778887642 2478999987664 76532 1 12345667888988743
Q ss_pred cccCeEEEEECCCCc--EEEeecCCCCCCCcceeEEEEECCeEEEEcCCCCCCCCCCcEEEEecC
Q 006334 253 HYYNDIWILNVSTCS--WSQLDTCGQQPQGRFSHAAVVTGSDIVIYGGCGEDERPLNELLVLQLG 315 (650)
Q Consensus 253 ~~~~dv~~yD~~t~~--W~~l~~~~~~p~~R~~hsav~~~~~lyV~GG~~~~~~~~~d~~~l~l~ 315 (650)
...+++||..+.+ |+.-. ...+...+.++.++.||+... ...++.++..
T Consensus 286 --~g~l~~~d~~tG~~~w~~~~-----~~~~~~~~~~~~~~~l~v~~~-------~g~l~~~d~~ 336 (376)
T 3q7m_A 286 --NDRVMALTIDGGVTLWTQSD-----LLHRLLTSPVLYNGNLVVGDS-------EGYLHWINVE 336 (376)
T ss_dssp --TCCEEEEETTTCCEEEEECT-----TTTSCCCCCEEETTEEEEECT-------TSEEEEEETT
T ss_pred --CCeEEEEECCCCcEEEeecc-----cCCCcccCCEEECCEEEEEeC-------CCeEEEEECC
Confidence 2469999998876 66431 112223344556777777632 1357777765
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=97.12 E-value=0.33 Score=50.32 Aligned_cols=226 Identities=15% Similarity=0.229 Sum_probs=125.4
Q ss_pred EEEEECCEEEEEccCCCCcccceEEEEECCCCc--EEEeecCCCC----CCCCcceEEEEECCEEEEEcccCCCcCcCeE
Q 006334 32 SACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMV--WSTLATTGQG----PGPRDSHSAILWGHKMIVFGGTNGYKKVNDL 105 (650)
Q Consensus 32 s~v~~~~~IyvfGG~~~~~~~~dv~~yD~~t~s--W~~l~~~g~~----P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv 105 (650)
+.++.++.||+.... ..++.||..+++ |+.-...... .......+.++.++.||+... ...+
T Consensus 48 ~p~v~~~~v~~~~~~------g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~------~g~l 115 (376)
T 3q7m_A 48 HPALADNVVYAADRA------GLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSE------KAQV 115 (376)
T ss_dssp CCEEETTEEEEECTT------SEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEET------TSEE
T ss_pred ccEEECCEEEEEcCC------CeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcC------CCEE
Confidence 456778999997542 379999987654 7654321100 012333445567889988543 2579
Q ss_pred EEEECCCCc--EEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCc--eeeccccCCCCCCC
Q 006334 106 HILDLESKE--WMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMR--WASPAVKGDIPVPR 181 (650)
Q Consensus 106 ~~yD~~t~~--W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~--Wt~i~~~~~lP~~R 181 (650)
+.||..+.+ |+.- .... ...+.++. ++.+|+.... ..++.||..+.+ |..-.. ......+
T Consensus 116 ~a~d~~tG~~~W~~~-~~~~-----~~~~p~~~-~~~v~v~~~~--------g~l~~~d~~tG~~~W~~~~~-~~~~~~~ 179 (376)
T 3q7m_A 116 YALNTSDGTVAWQTK-VAGE-----ALSRPVVS-DGLVLIHTSN--------GQLQALNEADGAVKWTVNLD-MPSLSLR 179 (376)
T ss_dssp EEEETTTCCEEEEEE-CSSC-----CCSCCEEE-TTEEEEECTT--------SEEEEEETTTCCEEEEEECC-C-----C
T ss_pred EEEECCCCCEEEEEe-CCCc-----eEcCCEEE-CCEEEEEcCC--------CeEEEEECCCCcEEEEEeCC-CCceeec
Confidence 999998774 7653 1111 11122333 6777774321 368999987764 875321 1111112
Q ss_pred CcceeeeecCEEEEEeccCCCCccCeEEEEECCCCc--EEEeeecCCCCCcc--------cceEEEEECCEEEEEeccCC
Q 006334 182 DSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLT--WSRLAIIGSSPGVR--------AGHAAINIGTKVYIIGGVGD 251 (650)
Q Consensus 182 ~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~--W~~i~~~g~~P~~R--------~~~s~v~~~~~IyI~GG~~~ 251 (650)
...+.+..++.+|+ |..+ ..++.||+.+.+ |+.-.. .+... .....+..++.+|+.+.
T Consensus 180 ~~~~~~~~~~~v~~-g~~~-----g~l~~~d~~tG~~~w~~~~~---~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~--- 247 (376)
T 3q7m_A 180 GESAPTTAFGAAVV-GGDN-----GRVSAVLMEQGQMIWQQRIS---QATGSTEIDRLSDVDTTPVVVNGVVFALAY--- 247 (376)
T ss_dssp CCCCCEEETTEEEE-CCTT-----TEEEEEETTTCCEEEEEECC---C-----------CCCCCCEEETTEEEEECT---
T ss_pred CCCCcEEECCEEEE-EcCC-----CEEEEEECCCCcEEEEEecc---cCCCCcccccccccCCCcEEECCEEEEEec---
Confidence 22344555677766 3222 478999987654 765431 11111 22334556788888642
Q ss_pred CcccCeEEEEECCCCc--EEEeecCCCCCCCcceeEEEEECCeEEEEcCCCCCCCCCCcEEEEecC
Q 006334 252 KHYYNDIWILNVSTCS--WSQLDTCGQQPQGRFSHAAVVTGSDIVIYGGCGEDERPLNELLVLQLG 315 (650)
Q Consensus 252 ~~~~~dv~~yD~~t~~--W~~l~~~~~~p~~R~~hsav~~~~~lyV~GG~~~~~~~~~d~~~l~l~ 315 (650)
...+++||+++.+ |..-. . . ....++.++.||+... ...++.++..
T Consensus 248 ---~g~l~~~d~~tG~~~w~~~~-----~--~-~~~~~~~~~~l~~~~~-------~g~l~~~d~~ 295 (376)
T 3q7m_A 248 ---NGNLTALDLRSGQIMWKREL-----G--S-VNDFIVDGNRIYLVDQ-------NDRVMALTID 295 (376)
T ss_dssp ---TSCEEEEETTTCCEEEEECC-----C--C-EEEEEEETTEEEEEET-------TCCEEEEETT
T ss_pred ---CcEEEEEECCCCcEEeeccC-----C--C-CCCceEECCEEEEEcC-------CCeEEEEECC
Confidence 2468999998764 66431 1 1 2345556788888743 1357777765
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.12 Score=51.67 Aligned_cols=199 Identities=16% Similarity=0.148 Sum_probs=120.6
Q ss_pred ceeEEEEECCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEE
Q 006334 29 WGHSACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHIL 108 (650)
Q Consensus 29 ~ghs~v~~~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~y 108 (650)
+-+...+.++.||+-.|..+ .+.+.++|+.+++-..-... |..-++.+++..+++||+.... .+.+++|
T Consensus 22 ftqGL~~~~~~LyestG~~g---~S~v~~vD~~tgkv~~~~~l---~~~~fgeGi~~~~~~ly~ltw~-----~~~v~v~ 90 (243)
T 3mbr_X 22 FTEGLFYLRGHLYESTGETG---RSSVRKVDLETGRILQRAEV---PPPYFGAGIVAWRDRLIQLTWR-----NHEGFVY 90 (243)
T ss_dssp CEEEEEEETTEEEEEECCTT---SCEEEEEETTTCCEEEEEEC---CTTCCEEEEEEETTEEEEEESS-----SSEEEEE
T ss_pred ccccEEEECCEEEEECCCCC---CceEEEEECCCCCEEEEEeC---CCCcceeEEEEeCCEEEEEEee-----CCEEEEE
Confidence 33456677899999888543 35799999999876654444 4455777888899999997533 4789999
Q ss_pred ECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceee-ccccCCCCCCC-Cccee
Q 006334 109 DLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWAS-PAVKGDIPVPR-DSHSS 186 (650)
Q Consensus 109 D~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~-i~~~~~lP~~R-~~hs~ 186 (650)
|..+.+-..- .+.+..+.+++.. ++.||+.-|. +.++.+|+++.+-.. +.. +.-+.+. .-..+
T Consensus 91 D~~tl~~~~t-----i~~~~~Gwglt~d-g~~L~vSdgs--------~~l~~iDp~t~~~~~~I~V-~~~g~~~~~lNeL 155 (243)
T 3mbr_X 91 DLATLTPRAR-----FRYPGEGWALTSD-DSHLYMSDGT--------AVIRKLDPDTLQQVGSIKV-TAGGRPLDNLNEL 155 (243)
T ss_dssp ETTTTEEEEE-----EECSSCCCEEEEC-SSCEEEECSS--------SEEEEECTTTCCEEEEEEC-EETTEECCCEEEE
T ss_pred ECCcCcEEEE-----EeCCCCceEEeeC-CCEEEEECCC--------CeEEEEeCCCCeEEEEEEE-ccCCcccccceee
Confidence 9988765431 1122345555543 4678886442 469999998865433 221 1122221 11234
Q ss_pred eeecCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCC-C--------CcccceEEEEE--CCEEEEEeccCCCccc
Q 006334 187 NVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSS-P--------GVRAGHAAINI--GTKVYIIGGVGDKHYY 255 (650)
Q Consensus 187 v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~-P--------~~R~~~s~v~~--~~~IyI~GG~~~~~~~ 255 (650)
...+++||+--- ..+++.+.|+.+.+-...-..+.+ + ..-.--..+.. .+++||.|=. .
T Consensus 156 e~~~G~lyanvw-----~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~-----w 225 (243)
T 3mbr_X 156 EWVNGELLANVW-----LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR-----W 225 (243)
T ss_dssp EEETTEEEEEET-----TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT-----C
T ss_pred EEeCCEEEEEEC-----CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC-----C
Confidence 456888886432 236899999999875433222111 1 11111223333 4689999844 4
Q ss_pred CeEEEEEC
Q 006334 256 NDIWILNV 263 (650)
Q Consensus 256 ~dv~~yD~ 263 (650)
..+|...+
T Consensus 226 p~~~~v~~ 233 (243)
T 3mbr_X 226 PMLYEIRL 233 (243)
T ss_dssp SEEEEEEE
T ss_pred CcEEEEEE
Confidence 56665543
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=97.08 E-value=0.065 Score=55.52 Aligned_cols=223 Identities=13% Similarity=0.151 Sum_probs=117.8
Q ss_pred CEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CC-EEEEEcccCCCcCcCeEEEEECCCCcE
Q 006334 38 GAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW-GH-KMIVFGGTNGYKKVNDLHILDLESKEW 115 (650)
Q Consensus 38 ~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~-~~-~lyVfGG~~~~~~~ndv~~yD~~t~~W 115 (650)
+.+|+.|+.+ +.+++||..+++........ ..-.++++. ++ .||+.|+.+ ..++++|+.+.+.
T Consensus 2 ~~l~vs~~~d-----~~v~v~d~~~~~~~~~~~~~-----~~~~~~~~s~dg~~l~~~~~~d-----~~i~v~d~~~~~~ 66 (391)
T 1l0q_A 2 TFAYIANSES-----DNISVIDVTSNKVTATIPVG-----SNPMGAVISPDGTKVYVANAHS-----NDVSIIDTATNNV 66 (391)
T ss_dssp EEEEEEETTT-----TEEEEEETTTTEEEEEEECS-----SSEEEEEECTTSSEEEEEEGGG-----TEEEEEETTTTEE
T ss_pred CEEEEEcCCC-----CEEEEEECCCCeEEEEeecC-----CCcceEEECCCCCEEEEECCCC-----CeEEEEECCCCeE
Confidence 4577777643 46999999887655433221 112334443 34 577766543 4789999988865
Q ss_pred EeeecCCCCCCCCcccEEEEEcCCE-EEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee--cCE
Q 006334 116 MRPECRGAPPSPRESHTATLVGDDK-MVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI--ANR 192 (650)
Q Consensus 116 ~~l~~~~~~P~~R~~hs~~~~~~~~-Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~--~~~ 192 (650)
...-.. ...-..++...+++ ||+.+.. + +.+++||+.+++...... ....-..++.. +..
T Consensus 67 ~~~~~~-----~~~v~~~~~spdg~~l~~~~~~-~------~~v~v~d~~~~~~~~~~~-----~~~~~~~~~~s~dg~~ 129 (391)
T 1l0q_A 67 IATVPA-----GSSPQGVAVSPDGKQVYVTNMA-S------STLSVIDTTSNTVAGTVK-----TGKSPLGLALSPDGKK 129 (391)
T ss_dssp EEEEEC-----SSSEEEEEECTTSSEEEEEETT-T------TEEEEEETTTTEEEEEEE-----CSSSEEEEEECTTSSE
T ss_pred EEEEEC-----CCCccceEECCCCCEEEEEECC-C------CEEEEEECCCCeEEEEEe-----CCCCcceEEECCCCCE
Confidence 443111 11223344444454 5554432 1 469999998876543221 11112233332 245
Q ss_pred EEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEE-CC-EEEEEeccCCCcccCeEEEEECCCCcEEE
Q 006334 193 LFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINI-GT-KVYIIGGVGDKHYYNDIWILNVSTCSWSQ 270 (650)
Q Consensus 193 Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~-~~-~IyI~GG~~~~~~~~dv~~yD~~t~~W~~ 270 (650)
+|+.++.+ +.+++||+.+.+....-..+. ....++.. ++ .||+.++.+ ..+++||+.+.+...
T Consensus 130 l~~~~~~~-----~~v~~~d~~~~~~~~~~~~~~-----~~~~~~~~~dg~~l~~~~~~~-----~~v~~~d~~~~~~~~ 194 (391)
T 1l0q_A 130 LYVTNNGD-----KTVSVINTVTKAVINTVSVGR-----SPKGIAVTPDGTKVYVANFDS-----MSISVIDTVTNSVID 194 (391)
T ss_dssp EEEEETTT-----TEEEEEETTTTEEEEEEECCS-----SEEEEEECTTSSEEEEEETTT-----TEEEEEETTTTEEEE
T ss_pred EEEEeCCC-----CEEEEEECCCCcEEEEEecCC-----CcceEEECCCCCEEEEEeCCC-----CEEEEEECCCCeEEE
Confidence 76776543 489999998887655432211 11233332 23 666665432 469999999886554
Q ss_pred eecCCCCCCCcceeEEEEE-CCeEEEEcCCCCCCCCCCcEEEEecC
Q 006334 271 LDTCGQQPQGRFSHAAVVT-GSDIVIYGGCGEDERPLNELLVLQLG 315 (650)
Q Consensus 271 l~~~~~~p~~R~~hsav~~-~~~lyV~GG~~~~~~~~~d~~~l~l~ 315 (650)
.-.. ...-.++++. +++.+++++... ....++++++.
T Consensus 195 ~~~~-----~~~~~~~~~~~~g~~l~~~~~~~---~~~~v~~~d~~ 232 (391)
T 1l0q_A 195 TVKV-----EAAPSGIAVNPEGTKAYVTNVDK---YFNTVSMIDTG 232 (391)
T ss_dssp EEEC-----SSEEEEEEECTTSSEEEEEEECS---SCCEEEEEETT
T ss_pred EEec-----CCCccceEECCCCCEEEEEecCc---CCCcEEEEECC
Confidence 3321 1112233333 444444443210 13467777775
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=96.98 E-value=0.11 Score=52.40 Aligned_cols=199 Identities=12% Similarity=0.057 Sum_probs=116.7
Q ss_pred cceEEEEECCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceE
Q 006334 79 DSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDL 158 (650)
Q Consensus 79 ~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv 158 (650)
+...+.+.++.||+..|..+ .+.+.++|+++.+-..- ..++..-++.+++.. +++||+..... +.+
T Consensus 44 ftqGL~~~~~~LyestG~~g---~S~v~~vD~~Tgkv~~~---~~l~~~~FgeGit~~-g~~ly~ltw~~-------~~v 109 (262)
T 3nol_A 44 FTEGFFYRNGYFYESTGLNG---RSSIRKVDIESGKTLQQ---IELGKRYFGEGISDW-KDKIVGLTWKN-------GLG 109 (262)
T ss_dssp EEEEEEEETTEEEEEEEETT---EEEEEEECTTTCCEEEE---EECCTTCCEEEEEEE-TTEEEEEESSS-------SEE
T ss_pred ccceEEEECCEEEEECCCCC---CceEEEEECCCCcEEEE---EecCCccceeEEEEe-CCEEEEEEeeC-------CEE
Confidence 44566777899999888644 24688999999875542 122333334445555 68999985542 579
Q ss_pred EEEecCCCceeeccccCCCCCCCCcceeeeecCEEEEEeccCCCCccCeEEEEECCCCcEE-EeeecCCCCCcccc-eEE
Q 006334 159 HVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWS-RLAIIGSSPGVRAG-HAA 236 (650)
Q Consensus 159 ~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~-~i~~~g~~P~~R~~-~s~ 236 (650)
++||+++.+-.. .++.+-.+..++..++.+|+.-| .+.++.+|+.+.+-. .+... .-..+... --+
T Consensus 110 ~v~D~~t~~~~~-----ti~~~~eG~glt~dg~~L~~SdG------s~~i~~iDp~T~~v~~~I~V~-~~g~~~~~lNEL 177 (262)
T 3nol_A 110 FVWNIRNLRQVR-----SFNYDGEGWGLTHNDQYLIMSDG------TPVLRFLDPESLTPVRTITVT-AHGEELPELNEL 177 (262)
T ss_dssp EEEETTTCCEEE-----EEECSSCCCCEEECSSCEEECCS------SSEEEEECTTTCSEEEEEECE-ETTEECCCEEEE
T ss_pred EEEECccCcEEE-----EEECCCCceEEecCCCEEEEECC------CCeEEEEcCCCCeEEEEEEec-cCCcccccccee
Confidence 999998765442 22223355566666677888654 268999999987643 33321 11111111 124
Q ss_pred EEECCEEEEEeccCCCcccCeEEEEECCCCcEEEeecCCCC--------CCCcceeEEEEE--CCeEEEEcCCCCCCCCC
Q 006334 237 INIGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLDTCGQQ--------PQGRFSHAAVVT--GSDIVIYGGCGEDERPL 306 (650)
Q Consensus 237 v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~~~~~~--------p~~R~~hsav~~--~~~lyV~GG~~~~~~~~ 306 (650)
...+++||+- . ...++|.+.|+++.+=...-..+.+ +..-.-.+.++. .+.+||.|-. -
T Consensus 178 e~~~G~lyan--~---w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~------W 246 (262)
T 3nol_A 178 EWVDGEIFAN--V---WQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL------W 246 (262)
T ss_dssp EEETTEEEEE--E---TTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT------C
T ss_pred EEECCEEEEE--E---ccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC------C
Confidence 4458888854 2 2346899999999874332211111 111122444554 4678888753 3
Q ss_pred CcEEEEec
Q 006334 307 NELLVLQL 314 (650)
Q Consensus 307 ~d~~~l~l 314 (650)
..+|.+.+
T Consensus 247 p~~~ev~~ 254 (262)
T 3nol_A 247 PKVFEITL 254 (262)
T ss_dssp SEEEEEEE
T ss_pred CceEEEEE
Confidence 45666555
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.47 Score=50.28 Aligned_cols=221 Identities=11% Similarity=0.118 Sum_probs=110.9
Q ss_pred eEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEE
Q 006334 54 DVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTA 133 (650)
Q Consensus 54 dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~ 133 (650)
.+.+||..+..-...... ......++..++..++.|+.++ .+..||+.+.+-...- . .. ...-..
T Consensus 220 ~i~~wd~~~~~~~~~~~~-----~~~~v~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~-~-~~---~~~v~~ 284 (445)
T 2ovr_B 220 TLRVWDIETGQCLHVLMG-----HVAAVRCVQYDGRRVVSGAYDF-----MVKVWDPETETCLHTL-Q-GH---TNRVYS 284 (445)
T ss_dssp EEEEEESSSCCEEEEEEC-----CSSCEEEEEECSSCEEEEETTS-----CEEEEEGGGTEEEEEE-C-CC---SSCEEE
T ss_pred EEEEEECCCCcEEEEEcC-----CcccEEEEEECCCEEEEEcCCC-----EEEEEECCCCcEeEEe-c-CC---CCceEE
Confidence 567777766553322111 1111222333666677776543 5778888776543210 1 11 111122
Q ss_pred EEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeeecCEEEEEeccCCCCccCeEEEEEC
Q 006334 134 TLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDM 213 (650)
Q Consensus 134 ~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~ 213 (650)
..+ ++..++.|+.+ +.+.+||+.+.+-...- .........+..++.+++.|+.+ ..+..||+
T Consensus 285 ~~~-~~~~l~~~~~d-------~~i~i~d~~~~~~~~~~-----~~~~~~v~~~~~~~~~l~~~~~d-----g~i~vwd~ 346 (445)
T 2ovr_B 285 LQF-DGIHVVSGSLD-------TSIRVWDVETGNCIHTL-----TGHQSLTSGMELKDNILVSGNAD-----STVKIWDI 346 (445)
T ss_dssp EEE-CSSEEEEEETT-------SCEEEEETTTCCEEEEE-----CCCCSCEEEEEEETTEEEEEETT-----SCEEEEET
T ss_pred EEE-CCCEEEEEeCC-------CeEEEEECCCCCEEEEE-----cCCcccEEEEEEeCCEEEEEeCC-----CeEEEEEC
Confidence 223 56677777763 35888998776533211 11111222334456677777755 47899998
Q ss_pred CCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCcEEEee-cCCCCCCCcceeEEEEEC-C
Q 006334 214 NSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLD-TCGQQPQGRFSHAAVVTG-S 291 (650)
Q Consensus 214 ~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~-~~~~~p~~R~~hsav~~~-~ 291 (650)
.+.+-...- ...........++..++.+++.|+.+ ..+.+||+.+.+....- ..........-.++.+.. +
T Consensus 347 ~~~~~~~~~--~~~~~~~~~v~~~~~~~~~l~s~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 419 (445)
T 2ovr_B 347 KTGQCLQTL--QGPNKHQSAVTCLQFNKNFVITSSDD-----GTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTK 419 (445)
T ss_dssp TTCCEEEEE--CSTTSCSSCEEEEEECSSEEEEEETT-----SEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSE
T ss_pred CCCcEEEEE--ccCCCCCCCEEEEEECCCEEEEEeCC-----CeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCE
Confidence 776533221 11111223344455567777777654 36899999988754422 110001111112233333 4
Q ss_pred eEEEEcCCCCCCCCCCcEEEEecCC
Q 006334 292 DIVIYGGCGEDERPLNELLVLQLGA 316 (650)
Q Consensus 292 ~lyV~GG~~~~~~~~~d~~~l~l~~ 316 (650)
.+++.|+.+ +.....+++++++.
T Consensus 420 ~~la~~~~d--g~~~~~l~v~df~~ 442 (445)
T 2ovr_B 420 LVCAVGSRN--GTEETKLLVLDFDV 442 (445)
T ss_dssp EEEEEECSS--SSSCCEEEEEECCC
T ss_pred EEEEEcccC--CCCccEEEEEECCC
Confidence 455666643 32345678888763
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.078 Score=61.51 Aligned_cols=224 Identities=11% Similarity=0.113 Sum_probs=124.9
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCcCcCeEEEEECCCCcE
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW-GHKMIVFGGTNGYKKVNDLHILDLESKEW 115 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~-~~~lyVfGG~~~~~~~ndv~~yD~~t~~W 115 (650)
++.|+| |.. ..-+++||+.+++++..... ..+ ...-.+++.. ++.|||.. . +.+++||+.+.+|
T Consensus 417 ~g~lWi-gt~-----~~Gl~~~~~~~~~~~~~~~~-~~~-~~~v~~i~~d~~g~lwigt-~------~Gl~~~~~~~~~~ 481 (781)
T 3v9f_A 417 EGNLWF-GTY-----LGNISYYNTRLKKFQIIELE-KNE-LLDVRVFYEDKNKKIWIGT-H------AGVFVIDLASKKV 481 (781)
T ss_dssp TSCEEE-EET-----TEEEEEECSSSCEEEECCST-TTC-CCCEEEEEECTTSEEEEEE-T------TEEEEEESSSSSC
T ss_pred CCCEEE-Eec-----cCCEEEEcCCCCcEEEeccC-CCC-CCeEEEEEECCCCCEEEEE-C------CceEEEeCCCCeE
Confidence 467777 221 23589999999988877532 111 1122233332 47787732 1 4699999999888
Q ss_pred EeeecCCCCCC-CCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeee-ecCEE
Q 006334 116 MRPECRGAPPS-PRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNV-IANRL 193 (650)
Q Consensus 116 ~~l~~~~~~P~-~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~-~~~~I 193 (650)
+.......... ...-.+++...++.|+|- ... .-+++||+.+++|+.......++.... .+++. -++.|
T Consensus 482 ~~~~~~~~~~~~~~~i~~i~~d~~g~lWig-t~~-------~Gl~~~~~~~~~~~~~~~~~~l~~~~i-~~i~~d~~g~l 552 (781)
T 3v9f_A 482 IHHYDTSNSQLLENFVRSIAQDSEGRFWIG-TFG-------GGVGIYTPDMQLVRKFNQYEGFCSNTI-NQIYRSSKGQM 552 (781)
T ss_dssp CEEECTTTSSCSCSCEEEEEECTTCCEEEE-ESS-------SCEEEECTTCCEEEEECTTTTCSCSCE-EEEEECTTSCE
T ss_pred EecccCcccccccceeEEEEEcCCCCEEEE-EcC-------CCEEEEeCCCCeEEEccCCCCCCCCee-EEEEECCCCCE
Confidence 76532211111 122233334445777763 221 238899999988887653223332111 11221 24667
Q ss_pred EEEeccCCCCccCeE-EEEECCCCcEEEeeecCCCCCcccceEEEEE-CCEEEEEeccCCCcccCeEEEEECCCCcEEEe
Q 006334 194 FVYGGDCGDQYHGDI-DMLDMNSLTWSRLAIIGSSPGVRAGHAAINI-GTKVYIIGGVGDKHYYNDIWILNVSTCSWSQL 271 (650)
Q Consensus 194 yv~GG~~~~~~~n~v-~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~-~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l 271 (650)
++... +.+ ++||+.+.++..+.....+|.... .+++.. ++.|++.+. +.+.+||+++.++...
T Consensus 553 Wi~T~-------~Glv~~~d~~~~~~~~~~~~~gl~~~~i-~~i~~d~~g~lW~~t~-------~Gl~~~~~~~~~~~~~ 617 (781)
T 3v9f_A 553 WLATG-------EGLVCFPSARNFDYQVFQRKEGLPNTHI-RAISEDKNGNIWASTN-------TGISCYITSKKCFYTY 617 (781)
T ss_dssp EEEET-------TEEEEESCTTTCCCEEECGGGTCSCCCC-CEEEECSSSCEEEECS-------SCEEEEETTTTEEEEE
T ss_pred EEEEC-------CCceEEECCCCCcEEEccccCCCCCceE-EEEEECCCCCEEEEcC-------CceEEEECCCCceEEe
Confidence 77532 356 899999988887764333443332 334333 467777642 3589999999999887
Q ss_pred ecCCCCCCCcceeEEEEE-CCeEEEEcCC
Q 006334 272 DTCGQQPQGRFSHAAVVT-GSDIVIYGGC 299 (650)
Q Consensus 272 ~~~~~~p~~R~~hsav~~-~~~lyV~GG~ 299 (650)
.....++...+...++.. .+..+.|||.
T Consensus 618 ~~~dGl~~~~f~~~~~~~~~~G~l~~g~~ 646 (781)
T 3v9f_A 618 DHSNNIPQGSFISGCVTKDHNGLIYFGSI 646 (781)
T ss_dssp CGGGTCCSSCEEEEEEEECTTSCEEEEET
T ss_pred cccCCccccccccCceEECCCCEEEEECC
Confidence 653334544444333333 3444555663
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=96.81 E-value=0.15 Score=54.35 Aligned_cols=224 Identities=12% Similarity=0.047 Sum_probs=119.4
Q ss_pred ceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccE
Q 006334 53 GDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHT 132 (650)
Q Consensus 53 ~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs 132 (650)
..++++|.....-..+.... ......+..-+++.+++++.++. ...++++|+.+.+...+.. .+ ....+
T Consensus 159 ~~i~i~d~~g~~~~~l~~~~----~~v~~~~~Spdg~~la~~s~~~~--~~~i~~~d~~tg~~~~l~~---~~--~~~~~ 227 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHRSP----QPLMSPAWSPDGSKLAYVTFESG--RSALVIQTLANGAVRQVAS---FP--RHNGA 227 (415)
T ss_dssp EEEEEEETTSCSCEEEEEES----SCEEEEEECTTSSEEEEEECTTS--SCEEEEEETTTCCEEEEEC---CS--SCEEE
T ss_pred ceEEEEcCCCCCCEEEeCCC----CcceeeEEcCCCCEEEEEEecCC--CcEEEEEECCCCcEEEeec---CC--CcccC
Confidence 68999998866555543321 11122222236666677765432 2689999999988766521 11 12233
Q ss_pred EEEEcCCEEEE-EccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee-cCEEEEEeccCCCCccCeEEE
Q 006334 133 ATLVGDDKMVI-FGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI-ANRLFVYGGDCGDQYHGDIDM 210 (650)
Q Consensus 133 ~~~~~~~~Lyv-~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~-~~~Iyv~GG~~~~~~~n~v~~ 210 (650)
.....+++.++ .+.. +. ...++++|+.+.+...+. ... ......... +++.+++++... -...++.
T Consensus 228 ~~~spdg~~la~~~~~-~g----~~~i~~~d~~~~~~~~l~---~~~--~~~~~~~~spdg~~l~~~s~~~--g~~~i~~ 295 (415)
T 2hqs_A 228 PAFSPDGSKLAFALSK-TG----SLNLYVMDLASGQIRQVT---DGR--SNNTEPTWFPDSQNLAFTSDQA--GRPQVYK 295 (415)
T ss_dssp EEECTTSSEEEEEECT-TS----SCEEEEEETTTCCEEECC---CCS--SCEEEEEECTTSSEEEEEECTT--SSCEEEE
T ss_pred EEEcCCCCEEEEEEec-CC----CceEEEEECCCCCEEeCc---CCC--CcccceEECCCCCEEEEEECCC--CCcEEEE
Confidence 44444565444 4433 21 246999999888776543 111 111122222 455444444321 1247999
Q ss_pred EECCCCcEEEeeecCCCCCcccceEEEE-ECCEEEEEeccCCCcccCeEEEEECCCCcEEEeecCCCCCCCcceeEEEEE
Q 006334 211 LDMNSLTWSRLAIIGSSPGVRAGHAAIN-IGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVT 289 (650)
Q Consensus 211 yd~~t~~W~~i~~~g~~P~~R~~~s~v~-~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~~~~~~p~~R~~hsav~~ 289 (650)
+|+.+.....+.. .......++. .+++.+++++..+. ...++++|+.+.+...+... . ...+..+.
T Consensus 296 ~d~~~~~~~~l~~-----~~~~~~~~~~spdG~~l~~~~~~~g--~~~i~~~d~~~~~~~~l~~~-----~-~~~~~~~s 362 (415)
T 2hqs_A 296 VNINGGAPQRITW-----EGSQNQDADVSSDGKFMVMVSSNGG--QQHIAKQDLATGGVQVLSST-----F-LDETPSLA 362 (415)
T ss_dssp EETTSSCCEECCC-----SSSEEEEEEECTTSSEEEEEEECSS--CEEEEEEETTTCCEEECCCS-----S-SCEEEEEC
T ss_pred EECCCCCEEEEec-----CCCcccCeEECCCCCEEEEEECcCC--ceEEEEEECCCCCEEEecCC-----C-CcCCeEEc
Confidence 9998876554431 1122222222 34555555554322 35799999999988766431 1 22233333
Q ss_pred -CCeEEEEcCCCCCCCCCCcEEEEecC
Q 006334 290 -GSDIVIYGGCGEDERPLNELLVLQLG 315 (650)
Q Consensus 290 -~~~lyV~GG~~~~~~~~~d~~~l~l~ 315 (650)
+++.+++++.... ...++++++.
T Consensus 363 pdg~~l~~~s~~~~---~~~l~~~d~~ 386 (415)
T 2hqs_A 363 PNGTMVIYSSSQGM---GSVLNLVSTD 386 (415)
T ss_dssp TTSSEEEEEEEETT---EEEEEEEETT
T ss_pred CCCCEEEEEEcCCC---ccEEEEEECC
Confidence 5677777664221 2367777775
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.23 Score=50.11 Aligned_cols=195 Identities=10% Similarity=0.076 Sum_probs=114.9
Q ss_pred eEEEEECCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEEC
Q 006334 31 HSACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDL 110 (650)
Q Consensus 31 hs~v~~~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~ 110 (650)
..+.+.++.||+-.|..+ .+.+.++|+.+++-..-... +..-++.+++..+++||+.-.. .+.+++||+
T Consensus 46 qGL~~~~~~LyestG~~g---~S~v~~vD~~Tgkv~~~~~l---~~~~FgeGit~~g~~ly~ltw~-----~~~v~v~D~ 114 (262)
T 3nol_A 46 EGFFYRNGYFYESTGLNG---RSSIRKVDIESGKTLQQIEL---GKRYFGEGISDWKDKIVGLTWK-----NGLGFVWNI 114 (262)
T ss_dssp EEEEEETTEEEEEEEETT---EEEEEEECTTTCCEEEEEEC---CTTCCEEEEEEETTEEEEEESS-----SSEEEEEET
T ss_pred ceEEEECCEEEEECCCCC---CceEEEEECCCCcEEEEEec---CCccceeEEEEeCCEEEEEEee-----CCEEEEEEC
Confidence 344556889999888533 35789999999876554333 3344566788889999997542 468999999
Q ss_pred CCCcEEe-eecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceee-ccccCCCCCCCCc-ceee
Q 006334 111 ESKEWMR-PECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWAS-PAVKGDIPVPRDS-HSSN 187 (650)
Q Consensus 111 ~t~~W~~-l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~-i~~~~~lP~~R~~-hs~v 187 (650)
.+.+-.. ++. +-.+.+++.. ++.||+.-| .+.++.+|+.+.+-.. +... .-..+... ..+.
T Consensus 115 ~t~~~~~ti~~------~~eG~glt~d-g~~L~~SdG--------s~~i~~iDp~T~~v~~~I~V~-~~g~~~~~lNELe 178 (262)
T 3nol_A 115 RNLRQVRSFNY------DGEGWGLTHN-DQYLIMSDG--------TPVLRFLDPESLTPVRTITVT-AHGEELPELNELE 178 (262)
T ss_dssp TTCCEEEEEEC------SSCCCCEEEC-SSCEEECCS--------SSEEEEECTTTCSEEEEEECE-ETTEECCCEEEEE
T ss_pred ccCcEEEEEEC------CCCceEEecC-CCEEEEECC--------CCeEEEEcCCCCeEEEEEEec-cCCccccccceeE
Confidence 9876543 221 2244455533 467777543 2469999998865433 2211 11111111 1244
Q ss_pred eecCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCC--------CcccceEEEEE--CCEEEEEeccCCCcccCe
Q 006334 188 VIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSP--------GVRAGHAAINI--GTKVYIIGGVGDKHYYND 257 (650)
Q Consensus 188 ~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P--------~~R~~~s~v~~--~~~IyI~GG~~~~~~~~d 257 (650)
..+++||+--- ..+++.+.|+.+.+-...-..+.+. ..-.-...+.. .+++||.|-. ...
T Consensus 179 ~~~G~lyan~w-----~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~-----Wp~ 248 (262)
T 3nol_A 179 WVDGEIFANVW-----QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL-----WPK 248 (262)
T ss_dssp EETTEEEEEET-----TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT-----CSE
T ss_pred EECCEEEEEEc-----cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC-----CCc
Confidence 55888886422 2468999999998855433221111 11111233333 3689999854 345
Q ss_pred EEEEE
Q 006334 258 IWILN 262 (650)
Q Consensus 258 v~~yD 262 (650)
+|...
T Consensus 249 ~~ev~ 253 (262)
T 3nol_A 249 VFEIT 253 (262)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 55543
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=96.77 E-value=0.43 Score=47.65 Aligned_cols=231 Identities=13% Similarity=0.134 Sum_probs=116.8
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCcCcCeEEEEECCCCcE
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW-GHKMIVFGGTNGYKKVNDLHILDLESKEW 115 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~-~~~lyVfGG~~~~~~~ndv~~yD~~t~~W 115 (650)
++.+++.|+.++ .+.+||..+......... . ...-.+++.. ++++++.|+.++ .+.+||+.+.+-
T Consensus 34 ~~~~l~s~~~dg-----~i~iw~~~~~~~~~~~~~-h---~~~v~~~~~~~~~~~l~s~~~d~-----~i~vwd~~~~~~ 99 (312)
T 4ery_A 34 NGEWLASSSADK-----LIKIWGAYDGKFEKTISG-H---KLGISDVAWSSDSNLLVSASDDK-----TLKIWDVSSGKC 99 (312)
T ss_dssp TSSEEEEEETTS-----CEEEEETTTCCEEEEECC-C---SSCEEEEEECTTSSEEEEEETTS-----EEEEEETTTCCE
T ss_pred CCCEEEEeeCCC-----eEEEEeCCCcccchhhcc-C---CCceEEEEEcCCCCEEEEECCCC-----EEEEEECCCCcE
Confidence 356666666443 578889888776554321 1 1111223332 567777787643 688899887764
Q ss_pred EeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee--cCEE
Q 006334 116 MRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI--ANRL 193 (650)
Q Consensus 116 ~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~--~~~I 193 (650)
...- .+ ....-..+....++.+++.|+.+ ..+.+||+.+.+-... +......-..+.+ ++.+
T Consensus 100 ~~~~-~~---~~~~v~~~~~~~~~~~l~s~~~d-------~~i~iwd~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~ 163 (312)
T 4ery_A 100 LKTL-KG---HSNYVFCCNFNPQSNLIVSGSFD-------ESVRIWDVKTGKCLKT-----LPAHSDPVSAVHFNRDGSL 163 (312)
T ss_dssp EEEE-EC---CSSCEEEEEECSSSSEEEEEETT-------SCEEEEETTTCCEEEE-----ECCCSSCEEEEEECTTSSE
T ss_pred EEEE-cC---CCCCEEEEEEcCCCCEEEEEeCC-------CcEEEEECCCCEEEEE-----ecCCCCcEEEEEEcCCCCE
Confidence 3320 11 01112233333456777777763 2488899877643321 1111111122222 4567
Q ss_pred EEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCcEEEeec
Q 006334 194 FVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLDT 273 (650)
Q Consensus 194 yv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~~ 273 (650)
++.|+.+ ..+..||+.+.+....-. ..............+++.++.|+.+ ..+.+||+.+..-...-.
T Consensus 164 l~~~~~d-----~~i~~wd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~ 231 (312)
T 4ery_A 164 IVSSSYD-----GLCRIWDTASGQCLKTLI--DDDNPPVSFVKFSPNGKYILAATLD-----NTLKLWDYSKGKCLKTYT 231 (312)
T ss_dssp EEEEETT-----SCEEEEETTTCCEEEEEC--CSSCCCEEEEEECTTSSEEEEEETT-----TEEEEEETTTTEEEEEEC
T ss_pred EEEEeCC-----CcEEEEECCCCceeeEEe--ccCCCceEEEEECCCCCEEEEEcCC-----CeEEEEECCCCcEEEEEE
Confidence 7777765 468899988776443221 1111111111222245666666643 368999998875433221
Q ss_pred CCCCCCCcceeEEEE-ECCeEEEEcCCCCCCCCCCcEEEEecCC
Q 006334 274 CGQQPQGRFSHAAVV-TGSDIVIYGGCGEDERPLNELLVLQLGA 316 (650)
Q Consensus 274 ~~~~p~~R~~hsav~-~~~~lyV~GG~~~~~~~~~d~~~l~l~~ 316 (650)
. .......-..... .++.+++.|+.+ ..+.++++..
T Consensus 232 ~-~~~~~~~~~~~~~~~~~~~l~sg~~d------g~i~vwd~~~ 268 (312)
T 4ery_A 232 G-HKNEKYCIFANFSVTGGKWIVSGSED------NLVYIWNLQT 268 (312)
T ss_dssp S-SCCSSSCCCEEEECSSSCEEEECCTT------SCEEEEETTT
T ss_pred e-cCCceEEEEEEEEeCCCcEEEEECCC------CEEEEEECCC
Confidence 1 1111111112222 256677777642 3566777653
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.24 Score=51.92 Aligned_cols=201 Identities=11% Similarity=0.148 Sum_probs=101.4
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEcccCCCcCcCeEEEEECCCCc
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW--GHKMIVFGGTNGYKKVNDLHILDLESKE 114 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~--~~~lyVfGG~~~~~~~ndv~~yD~~t~~ 114 (650)
++.+|+.++.+ ..+++||+.+.+....... ....-.++++. ++.+|+.++.+ ..+++||+.+.+
T Consensus 180 ~~~~~~s~~~d-----~~v~~~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~-----~~i~~~d~~~~~ 245 (433)
T 3bws_A 180 HNELWVSQMQA-----NAVHVFDLKTLAYKATVDL----TGKWSKILLYDPIRDLVYCSNWIS-----EDISVIDRKTKL 245 (433)
T ss_dssp GTEEEEEEGGG-----TEEEEEETTTCCEEEEEEC----SSSSEEEEEEETTTTEEEEEETTT-----TEEEEEETTTTE
T ss_pred CCEEEEEECCC-----CEEEEEECCCceEEEEEcC----CCCCeeEEEEcCCCCEEEEEecCC-----CcEEEEECCCCc
Confidence 45666666532 4688999887664432221 11122333443 34566666433 369999998876
Q ss_pred EEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCc-ccceEEEEecCCCceeeccccCCCCCCCCcceeeee--cC
Q 006334 115 WMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEAN-YLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI--AN 191 (650)
Q Consensus 115 W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~-~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~--~~ 191 (650)
.... .+....-..++...+++.+++++....... .-..+++||+.+.+..... ..+ ..-..++.. ++
T Consensus 246 ~~~~-----~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~---~~~--~~~~~~~~~~~g~ 315 (433)
T 3bws_A 246 EIRK-----TDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI---GPP--GNKRHIVSGNTEN 315 (433)
T ss_dssp EEEE-----CCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE---EEE--ECEEEEEECSSTT
T ss_pred EEEE-----ecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec---cCC--CCcceEEECCCCC
Confidence 6443 111122233444445655555554221100 1247889999876543321 001 111122222 34
Q ss_pred EEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEE-CCEEEEEeccCCCc----------ccCeEEE
Q 006334 192 RLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINI-GTKVYIIGGVGDKH----------YYNDIWI 260 (650)
Q Consensus 192 ~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~-~~~IyI~GG~~~~~----------~~~dv~~ 260 (650)
.+|+.++.+ +.+.+||+.+.+-...-.. ...-..++.. +++.+++++..... .-..+++
T Consensus 316 ~l~~~~~~~-----~~v~v~d~~~~~~~~~~~~-----~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~ 385 (433)
T 3bws_A 316 KIYVSDMCC-----SKIEVYDLKEKKVQKSIPV-----FDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYV 385 (433)
T ss_dssp EEEEEETTT-----TEEEEEETTTTEEEEEEEC-----SSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEE
T ss_pred EEEEEecCC-----CEEEEEECCCCcEEEEecC-----CCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEE
Confidence 677776644 4799999987764433211 1111233332 34444444332211 1247999
Q ss_pred EECCCCcEEEe
Q 006334 261 LNVSTCSWSQL 271 (650)
Q Consensus 261 yD~~t~~W~~l 271 (650)
||+.+.+....
T Consensus 386 ~d~~~~~~~~~ 396 (433)
T 3bws_A 386 IDTTTDTVKEF 396 (433)
T ss_dssp EETTTTEEEEE
T ss_pred EECCCCcEEEE
Confidence 99988775544
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.33 Score=56.27 Aligned_cols=212 Identities=11% Similarity=0.091 Sum_probs=115.7
Q ss_pred ceEEEEECCCCcEEEeecCCC-CCCCCcceEEEEE-CCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCC-C-CCC
Q 006334 53 GDVLMLNLDTMVWSTLATTGQ-GPGPRDSHSAILW-GHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAP-P-SPR 128 (650)
Q Consensus 53 ~dv~~yD~~t~sW~~l~~~g~-~P~pR~~hsa~~~-~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~-P-~~R 128 (650)
.-+++||+.++++........ .+. ..-.++... ++.|||.. . +.+++||+.+++|+........ . ...
T Consensus 427 ~Gl~~~d~~~~~~~~~~~~~~~l~~-~~v~~i~~d~~g~lwigt-~------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (795)
T 4a2l_A 427 GGLSILHRNSGQVENFNQRNSQLVN-ENVYAILPDGEGNLWLGT-L------SALVRFNPEQRSFTTIEKEKDGTPVVSK 498 (795)
T ss_dssp TEEEEEETTTCCEEEECTTTSCCSC-SCEEEEEECSSSCEEEEE-S------SCEEEEETTTTEEEECCBCTTCCBCCCC
T ss_pred CceeEEeCCCCcEEEeecCCCCcCC-CeeEEEEECCCCCEEEEe-c------CceeEEeCCCCeEEEccccccccccCCc
Confidence 358999999998887754211 111 111222222 46777743 2 3599999999999886322100 0 111
Q ss_pred cccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeecccc---CCCCCCCCcceeee-ecCEEEEEeccCCCCc
Q 006334 129 ESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVK---GDIPVPRDSHSSNV-IANRLFVYGGDCGDQY 204 (650)
Q Consensus 129 ~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~---~~lP~~R~~hs~v~-~~~~Iyv~GG~~~~~~ 204 (650)
.-.++....++.|++-.. +-+++||+.++++ ..... ..++.. .-.+++. .++.|++...
T Consensus 499 ~i~~i~~d~~g~lWigt~---------~Gl~~~~~~~~~~-~~~~~~~~~~l~~~-~i~~i~~d~~g~lWigT~------ 561 (795)
T 4a2l_A 499 QITTLFRDSHKRLWIGGE---------EGLSVFKQEGLDI-QKASILPVSNVTKL-FTNCIYEASNGIIWVGTR------ 561 (795)
T ss_dssp CEEEEEECTTCCEEEEES---------SCEEEEEEETTEE-EECCCSCSCGGGGS-CEEEEEECTTSCEEEEES------
T ss_pred eEEEEEECCCCCEEEEeC---------CceEEEeCCCCeE-EEecCCCCCCCCCC-eeEEEEECCCCCEEEEeC------
Confidence 122333334577777432 1388999988887 43210 111111 1111222 2466776432
Q ss_pred cCeEEEEECCCCcEEEeeecCCCCCcccceEEEEE-CCEEEEEeccCCCcccCeEEEEECCCCcEEEeecCCCCCCCcce
Q 006334 205 HGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINI-GTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFS 283 (650)
Q Consensus 205 ~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~-~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~~~~~~p~~R~~ 283 (650)
+.+++||+.+.++........+|.... .+++.. ++.|++.+. ..+.+||+++.++..+.....++...+.
T Consensus 562 -~Gl~~~d~~~~~~~~~~~~~gl~~~~i-~~i~~d~~g~lWi~t~-------~Gl~~~~~~~~~~~~~~~~dGl~~~~f~ 632 (795)
T 4a2l_A 562 -EGFYCFNEKDKQIKRYNTTNGLPNNVV-YGILEDSFGRLWLSTN-------RGISCFNPETEKFRNFTESDGLQSNQFN 632 (795)
T ss_dssp -SCEEEEETTTTEEEEECGGGTCSCSCE-EEEEECTTSCEEEEET-------TEEEEEETTTTEEEEECGGGTCSCSCEE
T ss_pred -CCceeECCCCCcEEEeCCCCCCchhhe-EEEEECCCCCEEEEcC-------CceEEEcCCCCcEEEcCCcCCCccccCc
Confidence 268999999999888764333443322 233333 357877752 4689999999999887653334444443
Q ss_pred eEE-EEECCeEEEEcC
Q 006334 284 HAA-VVTGSDIVIYGG 298 (650)
Q Consensus 284 hsa-v~~~~~lyV~GG 298 (650)
..+ +...+.-+.|||
T Consensus 633 ~~~~~~~~~G~l~~g~ 648 (795)
T 4a2l_A 633 TASYCRTSVGQMYFGG 648 (795)
T ss_dssp EEEEEECTTSCEEEEE
T ss_pred cCceeECCCCeEEEec
Confidence 333 333333444555
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.1 Score=52.78 Aligned_cols=155 Identities=8% Similarity=-0.002 Sum_probs=97.4
Q ss_pred cceEEEEECCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceE
Q 006334 79 DSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDL 158 (650)
Q Consensus 79 ~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv 158 (650)
+..++.+.++.||+..|..+. +.++|+++.+-..- . ++..-++.+++.. +++||+....+ +.+
T Consensus 56 ftqGL~~~~~~Ly~stG~~g~-----v~~iD~~Tgkv~~~---~-l~~~~FgeGit~~-g~~Ly~ltw~~-------~~v 118 (268)
T 3nok_A 56 FTQGLVFHQGHFFESTGHQGT-----LRQLSLESAQPVWM---E-RLGNIFAEGLASD-GERLYQLTWTE-------GLL 118 (268)
T ss_dssp CEEEEEEETTEEEEEETTTTE-----EEECCSSCSSCSEE---E-ECTTCCEEEEEEC-SSCEEEEESSS-------CEE
T ss_pred ccceEEEECCEEEEEcCCCCE-----EEEEECCCCcEEeE---E-CCCCcceeEEEEe-CCEEEEEEccC-------CEE
Confidence 446777779999998886543 88999999865432 1 2222233445544 68999985542 579
Q ss_pred EEEecCCCceeeccccCCCCCCCCcceeeeecCEEEEEeccCCCCccCeEEEEECCCCcEEE-eeecCCCCCcc-cceEE
Q 006334 159 HVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSR-LAIIGSSPGVR-AGHAA 236 (650)
Q Consensus 159 ~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~-i~~~g~~P~~R-~~~s~ 236 (650)
++||+++.+-.. .++.+-.+..++..+..+|+.-| .+.++.+|+.+.+-.. +... .-+.+. .---+
T Consensus 119 ~V~D~~Tl~~~~-----ti~~~~eGwGLt~Dg~~L~vSdG------s~~l~~iDp~T~~v~~~I~V~-~~g~~v~~lNeL 186 (268)
T 3nok_A 119 FTWSGMPPQRER-----TTRYSGEGWGLCYWNGKLVRSDG------GTMLTFHEPDGFALVGAVQVK-LRGQPVELINEL 186 (268)
T ss_dssp EEEETTTTEEEE-----EEECSSCCCCEEEETTEEEEECS------SSEEEEECTTTCCEEEEEECE-ETTEECCCEEEE
T ss_pred EEEECCcCcEEE-----EEeCCCceeEEecCCCEEEEECC------CCEEEEEcCCCCeEEEEEEeC-CCCccccccccc
Confidence 999998765543 22223345566666788998765 3689999999876443 3321 112221 11223
Q ss_pred EEECCEEEEEeccCCCcccCeEEEEECCCCc
Q 006334 237 INIGTKVYIIGGVGDKHYYNDIWILNVSTCS 267 (650)
Q Consensus 237 v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~ 267 (650)
...+++||+- . ...++|.+.|+++.+
T Consensus 187 e~~dG~lyan--v---w~s~~I~vIDp~TG~ 212 (268)
T 3nok_A 187 ECANGVIYAN--I---WHSSDVLEIDPATGT 212 (268)
T ss_dssp EEETTEEEEE--E---TTCSEEEEECTTTCB
T ss_pred EEeCCEEEEE--E---CCCCeEEEEeCCCCc
Confidence 4558888853 2 224689999999986
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=96.62 E-value=0.32 Score=51.55 Aligned_cols=226 Identities=11% Similarity=0.124 Sum_probs=120.8
Q ss_pred EEECCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEECCCC
Q 006334 34 CYSHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESK 113 (650)
Q Consensus 34 v~~~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~ 113 (650)
+..++..++.|+.+ ..+.+||..+..-...-.. ....-.+...++.+++.|+.++ .+.++|..+.
T Consensus 139 ~~~d~~~l~~g~~d-----g~i~iwd~~~~~~~~~~~~-----h~~~v~~l~~~~~~l~sg~~dg-----~i~vwd~~~~ 203 (435)
T 1p22_A 139 LQYDDQKIVSGLRD-----NTIKIWDKNTLECKRILTG-----HTGSVLCLQYDERVIITGSSDS-----TVRVWDVNTG 203 (435)
T ss_dssp EECCSSEEEEEESS-----SCEEEEESSSCCEEEEECC-----CSSCEEEEECCSSEEEEEETTS-----CEEEEESSSC
T ss_pred EEECCCEEEEEeCC-----CeEEEEeCCCCeEEEEEcC-----CCCcEEEEEECCCEEEEEcCCC-----eEEEEECCCC
Confidence 34467777777754 3688999887765433221 1112233334777888887654 5888998887
Q ss_pred cEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeeecCEE
Q 006334 114 EWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRL 193 (650)
Q Consensus 114 ~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~~~~I 193 (650)
+....- . . ....-..+.+ ++.+++.|+.+ ..+.+||+.+..-..... .+........++..++..
T Consensus 204 ~~~~~~-~-~---h~~~v~~l~~-~~~~l~s~s~d-------g~i~vwd~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~ 268 (435)
T 1p22_A 204 EMLNTL-I-H---HCEAVLHLRF-NNGMMVTCSKD-------RSIAVWDMASPTDITLRR--VLVGHRAAVNVVDFDDKY 268 (435)
T ss_dssp CEEEEE-C-C---CCSCEEEEEC-CTTEEEEEETT-------SCEEEEECSSSSCCEEEE--EECCCSSCEEEEEEETTE
T ss_pred cEEEEE-c-C---CCCcEEEEEE-cCCEEEEeeCC-------CcEEEEeCCCCCCceeee--EecCCCCcEEEEEeCCCE
Confidence 654321 1 1 1111122222 35567777763 358888887654221100 011111222333446667
Q ss_pred EEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCcEEEeec
Q 006334 194 FVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLDT 273 (650)
Q Consensus 194 yv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~~ 273 (650)
++.|+.+ ..+.+||+.+.+-...-. . ......++..++.+++.|+.+ ..+.+||+.+..-...-.
T Consensus 269 l~s~~~d-----g~i~vwd~~~~~~~~~~~--~---~~~~v~~~~~~~~~l~~g~~d-----g~i~iwd~~~~~~~~~~~ 333 (435)
T 1p22_A 269 IVSASGD-----RTIKVWNTSTCEFVRTLN--G---HKRGIACLQYRDRLVVSGSSD-----NTIRLWDIECGACLRVLE 333 (435)
T ss_dssp EEEEETT-----SEEEEEETTTCCEEEEEE--C---CSSCEEEEEEETTEEEEEETT-----SCEEEEETTTCCEEEEEC
T ss_pred EEEEeCC-----CeEEEEECCcCcEEEEEc--C---CCCcEEEEEeCCCEEEEEeCC-----CeEEEEECCCCCEEEEEe
Confidence 7777654 478899988765433221 1 112233444466677777654 368999998765432211
Q ss_pred CCCCCCCcceeEEEEECCeEEEEcCCCCCCCCCCcEEEEecC
Q 006334 274 CGQQPQGRFSHAAVVTGSDIVIYGGCGEDERPLNELLVLQLG 315 (650)
Q Consensus 274 ~~~~p~~R~~hsav~~~~~lyV~GG~~~~~~~~~d~~~l~l~ 315 (650)
.....-.++..++..++.|+.+ ..+.++++.
T Consensus 334 -----~h~~~v~~~~~~~~~l~sg~~d------g~i~vwd~~ 364 (435)
T 1p22_A 334 -----GHEELVRCIRFDNKRIVSGAYD------GKIKVWDLV 364 (435)
T ss_dssp -----CCSSCEEEEECCSSEEEEEETT------SCEEEEEHH
T ss_pred -----CCcCcEEEEEecCCEEEEEeCC------CcEEEEECC
Confidence 0111123344477888888743 356667664
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=96.55 E-value=0.35 Score=49.87 Aligned_cols=222 Identities=15% Similarity=0.164 Sum_probs=115.4
Q ss_pred CEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CC-EEEEEcccCCCcCcCeEEEEECCCCcE
Q 006334 38 GAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW-GH-KMIVFGGTNGYKKVNDLHILDLESKEW 115 (650)
Q Consensus 38 ~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~-~~-~lyVfGG~~~~~~~ndv~~yD~~t~~W 115 (650)
..||+.|+.+ ..+++||..+++.......+ ..-.++++. ++ .||+.|.. ...+++||+.+++.
T Consensus 44 ~~l~~~~~~d-----~~i~v~d~~~~~~~~~~~~~-----~~v~~~~~spdg~~l~~~~~~-----~~~v~v~d~~~~~~ 108 (391)
T 1l0q_A 44 TKVYVANAHS-----NDVSIIDTATNNVIATVPAG-----SSPQGVAVSPDGKQVYVTNMA-----SSTLSVIDTTSNTV 108 (391)
T ss_dssp SEEEEEEGGG-----TEEEEEETTTTEEEEEEECS-----SSEEEEEECTTSSEEEEEETT-----TTEEEEEETTTTEE
T ss_pred CEEEEECCCC-----CeEEEEECCCCeEEEEEECC-----CCccceEECCCCCEEEEEECC-----CCEEEEEECCCCeE
Confidence 4677776533 47999999888765443321 122333333 34 46655432 25699999998875
Q ss_pred EeeecCCCCCCCCcccEEEEEcCC-EEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee--cCE
Q 006334 116 MRPECRGAPPSPRESHTATLVGDD-KMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI--ANR 192 (650)
Q Consensus 116 ~~l~~~~~~P~~R~~hs~~~~~~~-~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~--~~~ 192 (650)
...-.. ......+....++ .||+.++.+ +.+++||+.+.+....-..+ ..-..++.. ++.
T Consensus 109 ~~~~~~-----~~~~~~~~~s~dg~~l~~~~~~~-------~~v~~~d~~~~~~~~~~~~~-----~~~~~~~~~~dg~~ 171 (391)
T 1l0q_A 109 AGTVKT-----GKSPLGLALSPDGKKLYVTNNGD-------KTVSVINTVTKAVINTVSVG-----RSPKGIAVTPDGTK 171 (391)
T ss_dssp EEEEEC-----SSSEEEEEECTTSSEEEEEETTT-------TEEEEEETTTTEEEEEEECC-----SSEEEEEECTTSSE
T ss_pred EEEEeC-----CCCcceEEECCCCCEEEEEeCCC-------CEEEEEECCCCcEEEEEecC-----CCcceEEECCCCCE
Confidence 443111 1122334444444 466666542 36899999887665432111 111222222 346
Q ss_pred EEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEE-CC-EEEEEeccCCCcccCeEEEEECCCCcEEE
Q 006334 193 LFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINI-GT-KVYIIGGVGDKHYYNDIWILNVSTCSWSQ 270 (650)
Q Consensus 193 Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~-~~-~IyI~GG~~~~~~~~dv~~yD~~t~~W~~ 270 (650)
+|+.++.+ +.+++||+.+.+....... ......++.. ++ .||+.+. . .....+++||+.+.+-..
T Consensus 172 l~~~~~~~-----~~v~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~g~~l~~~~~-~--~~~~~v~~~d~~~~~~~~ 238 (391)
T 1l0q_A 172 VYVANFDS-----MSISVIDTVTNSVIDTVKV-----EAAPSGIAVNPEGTKAYVTNV-D--KYFNTVSMIDTGTNKITA 238 (391)
T ss_dssp EEEEETTT-----TEEEEEETTTTEEEEEEEC-----SSEEEEEEECTTSSEEEEEEE-C--SSCCEEEEEETTTTEEEE
T ss_pred EEEEeCCC-----CEEEEEECCCCeEEEEEec-----CCCccceEECCCCCEEEEEec-C--cCCCcEEEEECCCCeEEE
Confidence 77766543 5799999988765544321 1111222222 34 4555432 1 123579999998875433
Q ss_pred eecCCCCCCCcceeEEEEE-CC-eEEEEcCCCCCCCCCCcEEEEecC
Q 006334 271 LDTCGQQPQGRFSHAAVVT-GS-DIVIYGGCGEDERPLNELLVLQLG 315 (650)
Q Consensus 271 l~~~~~~p~~R~~hsav~~-~~-~lyV~GG~~~~~~~~~d~~~l~l~ 315 (650)
.-.. ...-.++++. ++ .||+.++.+ ..+.++++.
T Consensus 239 ~~~~-----~~~~~~~~~s~dg~~l~~s~~~d------~~v~v~d~~ 274 (391)
T 1l0q_A 239 RIPV-----GPDPAGIAVTPDGKKVYVALSFX------NTVSVIDTA 274 (391)
T ss_dssp EEEC-----CSSEEEEEECTTSSEEEEEETTT------TEEEEEETT
T ss_pred EEec-----CCCccEEEEccCCCEEEEEcCCC------CEEEEEECC
Confidence 2211 1111233333 34 455665432 456777765
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.25 Score=49.88 Aligned_cols=156 Identities=13% Similarity=0.035 Sum_probs=98.5
Q ss_pred eeEEEEECCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEE
Q 006334 30 GHSACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILD 109 (650)
Q Consensus 30 ghs~v~~~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD 109 (650)
.+.+.+.++.||+-.|..+ .+.++|+.+++-..-. . +..-++.+++..+++||+.... .+.+++||
T Consensus 57 tqGL~~~~~~Ly~stG~~g-----~v~~iD~~Tgkv~~~~-l---~~~~FgeGit~~g~~Ly~ltw~-----~~~v~V~D 122 (268)
T 3nok_A 57 TQGLVFHQGHFFESTGHQG-----TLRQLSLESAQPVWME-R---LGNIFAEGLASDGERLYQLTWT-----EGLLFTWS 122 (268)
T ss_dssp EEEEEEETTEEEEEETTTT-----EEEECCSSCSSCSEEE-E---CTTCCEEEEEECSSCEEEEESS-----SCEEEEEE
T ss_pred cceEEEECCEEEEEcCCCC-----EEEEEECCCCcEEeEE-C---CCCcceeEEEEeCCEEEEEEcc-----CCEEEEEE
Confidence 3455667899999888543 3899999988643332 2 3344666788889999997542 46899999
Q ss_pred CCCCcEEe-eecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceee-ccccCCCCCCCC-ccee
Q 006334 110 LESKEWMR-PECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWAS-PAVKGDIPVPRD-SHSS 186 (650)
Q Consensus 110 ~~t~~W~~-l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~-i~~~~~lP~~R~-~hs~ 186 (650)
+.+.+-.. ++ .+-.+.+++.. .+.||+.-|. +.++.+|+++.+-.. +.. ..-+.+.. -..+
T Consensus 123 ~~Tl~~~~ti~------~~~eGwGLt~D-g~~L~vSdGs--------~~l~~iDp~T~~v~~~I~V-~~~g~~v~~lNeL 186 (268)
T 3nok_A 123 GMPPQRERTTR------YSGEGWGLCYW-NGKLVRSDGG--------TMLTFHEPDGFALVGAVQV-KLRGQPVELINEL 186 (268)
T ss_dssp TTTTEEEEEEE------CSSCCCCEEEE-TTEEEEECSS--------SEEEEECTTTCCEEEEEEC-EETTEECCCEEEE
T ss_pred CCcCcEEEEEe------CCCceeEEecC-CCEEEEECCC--------CEEEEEcCCCCeEEEEEEe-CCCCccccccccc
Confidence 99876543 22 12234555554 4788887552 479999998865443 221 11121211 1223
Q ss_pred eeecCEEEEEeccCCCCccCeEEEEECCCCcEEE
Q 006334 187 NVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSR 220 (650)
Q Consensus 187 v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~ 220 (650)
...+++||+-- + ..+++.+.|+.+.+-..
T Consensus 187 e~~dG~lyanv-w----~s~~I~vIDp~TG~V~~ 215 (268)
T 3nok_A 187 ECANGVIYANI-W----HSSDVLEIDPATGTVVG 215 (268)
T ss_dssp EEETTEEEEEE-T----TCSEEEEECTTTCBEEE
T ss_pred EEeCCEEEEEE-C----CCCeEEEEeCCCCcEEE
Confidence 44578888532 1 24689999999987443
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.33 Score=47.01 Aligned_cols=229 Identities=12% Similarity=0.008 Sum_probs=117.3
Q ss_pred ccceEEEEECCCCcEEEeecCCCCCCCCcceEEEE-ECCEEEEEcccCCCcCcCeEEEEECCC-CcEEeeecCCCCCCCC
Q 006334 51 HFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAIL-WGHKMIVFGGTNGYKKVNDLHILDLES-KEWMRPECRGAPPSPR 128 (650)
Q Consensus 51 ~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~-~~~~lyVfGG~~~~~~~ndv~~yD~~t-~~W~~l~~~~~~P~~R 128 (650)
....++++|+.++....+... ...-.++.+ .+++.+++++. ..++++|+.+ .+...+. ......
T Consensus 20 ~~~~i~~~d~~~~~~~~~~~~-----~~~v~~~~~spdg~~l~~~~~------~~i~~~d~~~~~~~~~~~---~~~~~~ 85 (297)
T 2ojh_A 20 MRSSIEIFNIRTRKMRVVWQT-----PELFEAPNWSPDGKYLLLNSE------GLLYRLSLAGDPSPEKVD---TGFATI 85 (297)
T ss_dssp CCEEEEEEETTTTEEEEEEEE-----SSCCEEEEECTTSSEEEEEET------TEEEEEESSSCCSCEECC---CTTCCC
T ss_pred cceeEEEEeCCCCceeeeccC-----CcceEeeEECCCCCEEEEEcC------CeEEEEeCCCCCCceEec---cccccc
Confidence 346799999999887765433 111223333 35666666642 4799999998 7766642 111112
Q ss_pred cccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee-cC-EEEEEeccCCCCccC
Q 006334 129 ESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI-AN-RLFVYGGDCGDQYHG 206 (650)
Q Consensus 129 ~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~-~~-~Iyv~GG~~~~~~~n 206 (650)
....+....+++.+++++.... ....+|.++..+.....+. ... . ...+... ++ .|++.++.++. -
T Consensus 86 ~~~~~~~spdg~~l~~~~~~~~---~~~~l~~~~~~~~~~~~~~---~~~-~--~~~~~~spdg~~l~~~~~~~~~---~ 153 (297)
T 2ojh_A 86 CNNDHGISPDGALYAISDKVEF---GKSAIYLLPSTGGTPRLMT---KNL-P--SYWHGWSPDGKSFTYCGIRDQV---F 153 (297)
T ss_dssp BCSCCEECTTSSEEEEEECTTT---SSCEEEEEETTCCCCEECC---SSS-S--EEEEEECTTSSEEEEEEEETTE---E
T ss_pred cccceEECCCCCEEEEEEeCCC---CcceEEEEECCCCceEEee---cCC-C--ccceEECCCCCEEEEEECCCCc---e
Confidence 2233444456776666664211 2457889988776655443 111 1 2222222 34 45544443321 3
Q ss_pred eEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCcEEEeecCCCCCCCcceeEE
Q 006334 207 DIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAA 286 (650)
Q Consensus 207 ~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~~~~~~p~~R~~hsa 286 (650)
.+|.++..+.....+.. .+ ..........+++.+++++..+ ....+|.+++.......+... ......+
T Consensus 154 ~l~~~~~~~~~~~~~~~---~~-~~~~~~~~s~dg~~l~~~~~~~--~~~~i~~~~~~~~~~~~~~~~-----~~~~~~~ 222 (297)
T 2ojh_A 154 DIYSMDIDSGVETRLTH---GE-GRNDGPDYSPDGRWIYFNSSRT--GQMQIWRVRVDGSSVERITDS-----AYGDWFP 222 (297)
T ss_dssp EEEEEETTTCCEEECCC---SS-SCEEEEEECTTSSEEEEEECTT--SSCEEEEEETTSSCEEECCCC-----SEEEEEE
T ss_pred EEEEEECCCCcceEccc---CC-CccccceECCCCCEEEEEecCC--CCccEEEECCCCCCcEEEecC-----CcccCCe
Confidence 67888888777766542 11 1111222222455444443222 245789999888777666421 1111222
Q ss_pred EEE-CCeEEEEcCCCCCCC-----CCCcEEEEecCC
Q 006334 287 VVT-GSDIVIYGGCGEDER-----PLNELLVLQLGA 316 (650)
Q Consensus 287 v~~-~~~lyV~GG~~~~~~-----~~~d~~~l~l~~ 316 (650)
.+. +++.+++++...... ....++++++..
T Consensus 223 ~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~ 258 (297)
T 2ojh_A 223 HPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDG 258 (297)
T ss_dssp EECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTS
T ss_pred EECCCCCEEEEEEcCCCCCcccccCceEEEEEecCC
Confidence 222 556555554322111 124577777753
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.82 Score=45.99 Aligned_cols=198 Identities=9% Similarity=0.016 Sum_probs=100.6
Q ss_pred CEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCC-----CCcceEEEEE--CCEEEEEcccCCCcCcCeEEEEEC
Q 006334 38 GAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPG-----PRDSHSAILW--GHKMIVFGGTNGYKKVNDLHILDL 110 (650)
Q Consensus 38 ~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~-----pR~~hsa~~~--~~~lyVfGG~~~~~~~ndv~~yD~ 110 (650)
+.+|+.+.. .+.+++||+.+.+-......+.... +..-+.+++. ++.+|+.+... ...+++||+
T Consensus 101 ~~l~v~~~~-----~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~----~~~i~~~d~ 171 (353)
T 3vgz_A 101 QTLWFGNTV-----NSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK----ESVIWVVDG 171 (353)
T ss_dssp TEEEEEETT-----TTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS----SCEEEEEET
T ss_pred CEEEEEecC-----CCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCC----CceEEEEcC
Confidence 456666553 2479999998877533322211111 1112334443 35677765321 246999999
Q ss_pred CCCcEEeeecCCCCCCCCcccEEEEEcCC-EEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee
Q 006334 111 ESKEWMRPECRGAPPSPRESHTATLVGDD-KMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI 189 (650)
Q Consensus 111 ~t~~W~~l~~~~~~P~~R~~hs~~~~~~~-~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~ 189 (650)
.+.+-...-. . ....-+.++...++ .||+... -+.+++||+.+.+-......+..........++..
T Consensus 172 ~~~~~~~~~~---~-~~~~~~~~~~s~dg~~l~~~~~--------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s 239 (353)
T 3vgz_A 172 GNIKLKTAIQ---N-TGKMSTGLALDSEGKRLYTTNA--------DGELITIDTADNKILSRKKLLDDGKEHFFINISLD 239 (353)
T ss_dssp TTTEEEEEEC---C-CCTTCCCCEEETTTTEEEEECT--------TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEE
T ss_pred CCCceEEEec---C-CCCccceEEECCCCCEEEEEcC--------CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEEC
Confidence 8876443211 0 11112334444444 4555432 13688999887654322111111011111122322
Q ss_pred --cCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEEC-CEEEEEeccCCCcccCeEEEEECCCC
Q 006334 190 --ANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIG-TKVYIIGGVGDKHYYNDIWILNVSTC 266 (650)
Q Consensus 190 --~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~-~~IyI~GG~~~~~~~~dv~~yD~~t~ 266 (650)
++.+|+.... .+.+++||+.+.+....-.. +.+ ...+...+ +.+|+.... .+.+++||+.+.
T Consensus 240 ~dg~~l~~~~~~-----~~~v~~~d~~~~~~~~~~~~---~~~--~~~~~s~dg~~l~v~~~~-----~~~v~~~d~~~~ 304 (353)
T 3vgz_A 240 TARQRAFITDSK-----AAEVLVVDTRNGNILAKVAA---PES--LAVLFNPARNEAYVTHRQ-----AGKVSVIDAKSY 304 (353)
T ss_dssp TTTTEEEEEESS-----SSEEEEEETTTCCEEEEEEC---SSC--CCEEEETTTTEEEEEETT-----TTEEEEEETTTT
T ss_pred CCCCEEEEEeCC-----CCEEEEEECCCCcEEEEEEc---CCC--ceEEECCCCCEEEEEECC-----CCeEEEEECCCC
Confidence 3557766532 26899999988776543322 222 12222233 457776532 247999999888
Q ss_pred cEEEe
Q 006334 267 SWSQL 271 (650)
Q Consensus 267 ~W~~l 271 (650)
+....
T Consensus 305 ~~~~~ 309 (353)
T 3vgz_A 305 KVVKT 309 (353)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 75543
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=96.49 E-value=0.44 Score=47.41 Aligned_cols=214 Identities=13% Similarity=0.144 Sum_probs=109.5
Q ss_pred CEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCcCcCeEEEEECCCCcEE
Q 006334 38 GAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW-GHKMIVFGGTNGYKKVNDLHILDLESKEWM 116 (650)
Q Consensus 38 ~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~-~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~ 116 (650)
+.+++.|+.+ ..+.+||..+..+........ . ...-.++.+. ++++++.|+.++ .+..||+.+.+..
T Consensus 109 ~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~~-~-~~~i~~~~~~~~~~~l~~~~~dg-----~v~~~d~~~~~~~ 176 (337)
T 1gxr_A 109 GCTLIVGGEA-----STLSIWDLAAPTPRIKAELTS-S-APACYALAISPDSKVCFSCCSDG-----NIAVWDLHNQTLV 176 (337)
T ss_dssp SSEEEEEESS-----SEEEEEECCCC--EEEEEEEC-S-SSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTTEEE
T ss_pred CCEEEEEcCC-----CcEEEEECCCCCcceeeeccc-C-CCceEEEEECCCCCEEEEEeCCC-----cEEEEeCCCCcee
Confidence 4555555532 368899998877544332211 0 1111223332 566777776543 5889999887654
Q ss_pred eeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee-cCEEEE
Q 006334 117 RPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI-ANRLFV 195 (650)
Q Consensus 117 ~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~-~~~Iyv 195 (650)
..- . . ....-.++....++.+++.|+.+ ..+.+||+.+.+-.... ..+ ..-.++... ++.+++
T Consensus 177 ~~~-~-~--~~~~i~~~~~~~~~~~l~~~~~d-------g~i~~~d~~~~~~~~~~---~~~--~~v~~~~~s~~~~~l~ 240 (337)
T 1gxr_A 177 RQF-Q-G--HTDGASCIDISNDGTKLWTGGLD-------NTVRSWDLREGRQLQQH---DFT--SQIFSLGYCPTGEWLA 240 (337)
T ss_dssp EEE-C-C--CSSCEEEEEECTTSSEEEEEETT-------SEEEEEETTTTEEEEEE---ECS--SCEEEEEECTTSSEEE
T ss_pred eee-e-c--ccCceEEEEECCCCCEEEEEecC-------CcEEEEECCCCceEeee---cCC--CceEEEEECCCCCEEE
Confidence 421 1 1 11222334444466677777753 35889998776543221 111 111222222 456777
Q ss_pred EeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEE-CCEEEEEeccCCCcccCeEEEEECCCCcEEEeecC
Q 006334 196 YGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINI-GTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLDTC 274 (650)
Q Consensus 196 ~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~-~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~~~ 274 (650)
+|+.+ ..+..||+.+..-..+.. . ...-.++... ++++++.|+.+ ..+.+||+.+.+-.....
T Consensus 241 ~~~~~-----~~i~~~~~~~~~~~~~~~---~--~~~v~~~~~~~~~~~l~~~~~d-----g~i~~~~~~~~~~~~~~~- 304 (337)
T 1gxr_A 241 VGMES-----SNVEVLHVNKPDKYQLHL---H--ESCVLSLKFAYCGKWFVSTGKD-----NLLNAWRTPYGASIFQSK- 304 (337)
T ss_dssp EEETT-----SCEEEEETTSSCEEEECC---C--SSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTCCEEEEEE-
T ss_pred EEcCC-----CcEEEEECCCCCeEEEcC---C--ccceeEEEECCCCCEEEEecCC-----CcEEEEECCCCeEEEEec-
Confidence 77654 468899988776443321 1 1111222222 45667776643 368999998876553321
Q ss_pred CCCCCCcceeEEEEE-CCeEEEEcCC
Q 006334 275 GQQPQGRFSHAAVVT-GSDIVIYGGC 299 (650)
Q Consensus 275 ~~~p~~R~~hsav~~-~~~lyV~GG~ 299 (650)
....-.++.+. ++.+++.|+.
T Consensus 305 ----~~~~v~~~~~s~~~~~l~~~~~ 326 (337)
T 1gxr_A 305 ----ESSSVLSCDISVDDKYIVTGSG 326 (337)
T ss_dssp ----CSSCEEEEEECTTSCEEEEEET
T ss_pred ----CCCcEEEEEECCCCCEEEEecC
Confidence 11111223333 4566676664
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.32 Score=50.97 Aligned_cols=198 Identities=10% Similarity=-0.013 Sum_probs=102.4
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcc-eEEEE-ECCEEEEEcccCCCcCcCeEEEEECCCCc
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDS-HSAIL-WGHKMIVFGGTNGYKKVNDLHILDLESKE 114 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~-hsa~~-~~~~lyVfGG~~~~~~~ndv~~yD~~t~~ 114 (650)
++.+|+.++.+ ..+++||+.+.+................ .++++ .++++|+.|+.+ ..+++||+.+.+
T Consensus 133 ~~~~~~~~~~~-----~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d-----~~v~~~d~~~~~ 202 (433)
T 3bws_A 133 NTRLAIPLLED-----EGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQA-----NAVHVFDLKTLA 202 (433)
T ss_dssp SSEEEEEBTTS-----SSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGG-----TEEEEEETTTCC
T ss_pred CCeEEEEeCCC-----CeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCC-----CEEEEEECCCce
Confidence 56777776643 3599999998876653221110011111 12222 267888877643 468999998876
Q ss_pred EEeeecCCCCCCCCcccEEEEEcCC-EEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee-cCE
Q 006334 115 WMRPECRGAPPSPRESHTATLVGDD-KMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI-ANR 192 (650)
Q Consensus 115 W~~l~~~~~~P~~R~~hs~~~~~~~-~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~-~~~ 192 (650)
....-. .....-..++...++ .+|+.++.+ ..+.+||+.+.+..... +....-..++.. ++.
T Consensus 203 ~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~-------~~i~~~d~~~~~~~~~~-----~~~~~~~~~~~~~~g~ 266 (433)
T 3bws_A 203 YKATVD----LTGKWSKILLYDPIRDLVYCSNWIS-------EDISVIDRKTKLEIRKT-----DKIGLPRGLLLSKDGK 266 (433)
T ss_dssp EEEEEE----CSSSSEEEEEEETTTTEEEEEETTT-------TEEEEEETTTTEEEEEC-----CCCSEEEEEEECTTSS
T ss_pred EEEEEc----CCCCCeeEEEEcCCCCEEEEEecCC-------CcEEEEECCCCcEEEEe-----cCCCCceEEEEcCCCC
Confidence 443211 111122334444444 455655432 36899999877654321 111111222222 344
Q ss_pred EEEEeccCCCCc---cCeEEEEECCCCcEEEeeecCCCCCcccceEEEEE-CC-EEEEEeccCCCcccCeEEEEECCCCc
Q 006334 193 LFVYGGDCGDQY---HGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINI-GT-KVYIIGGVGDKHYYNDIWILNVSTCS 267 (650)
Q Consensus 193 Iyv~GG~~~~~~---~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~-~~-~IyI~GG~~~~~~~~dv~~yD~~t~~ 267 (650)
.+++++...... -..+++||+.+.+....... + .....++.. ++ .+|+.++.+ ..+.+||+.+.+
T Consensus 267 ~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~---~--~~~~~~~~~~~g~~l~~~~~~~-----~~v~v~d~~~~~ 336 (433)
T 3bws_A 267 ELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGP---P--GNKRHIVSGNTENKIYVSDMCC-----SKIEVYDLKEKK 336 (433)
T ss_dssp EEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEE---E--ECEEEEEECSSTTEEEEEETTT-----TEEEEEETTTTE
T ss_pred EEEEEECCCCccccCCCeEEEEECCCCcEEeeccC---C--CCcceEEECCCCCEEEEEecCC-----CEEEEEECCCCc
Confidence 444444322211 25789999988764443211 0 111122222 33 677776543 479999998765
Q ss_pred EEE
Q 006334 268 WSQ 270 (650)
Q Consensus 268 W~~ 270 (650)
-..
T Consensus 337 ~~~ 339 (433)
T 3bws_A 337 VQK 339 (433)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.25 Score=50.25 Aligned_cols=195 Identities=11% Similarity=0.066 Sum_probs=100.0
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-C--CEEEEEcccCCCcCcCeEEEEECCCC
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW-G--HKMIVFGGTNGYKKVNDLHILDLESK 113 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~-~--~~lyVfGG~~~~~~~ndv~~yD~~t~ 113 (650)
++.+++.|+.++ .+.+||.....+..+..... ....-.++.+. + +.+++.|+.++ .+.++|+.+.
T Consensus 22 ~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~~~dg-----~v~iwd~~~~ 89 (379)
T 3jrp_A 22 YGKRLATCSSDK-----TIKIFEVEGETHKLIDTLTG--HEGPVWRVDWAHPKFGTILASCSYDG-----KVLIWKEENG 89 (379)
T ss_dssp SSSEEEEEETTS-----CEEEEEEETTEEEEEEEECC--CSSCEEEEEECCGGGCSEEEEEETTS-----CEEEEEEETT
T ss_pred CCCEEEEEECCC-----cEEEEecCCCcceeeeEecC--CCCcEEEEEeCCCCCCCEEEEeccCC-----EEEEEEcCCC
Confidence 356666676543 57888887666766543311 01111233332 2 67777777643 5788898888
Q ss_pred cEEeeecCCCCCCCCcccEEEEEcC--CEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee--
Q 006334 114 EWMRPECRGAPPSPRESHTATLVGD--DKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI-- 189 (650)
Q Consensus 114 ~W~~l~~~~~~P~~R~~hs~~~~~~--~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~-- 189 (650)
+|..+...... ...-.++....+ +.+++.|+.+ ..+.+||+.+............ ...-.++...
T Consensus 90 ~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~~d-------~~i~v~d~~~~~~~~~~~~~~~--~~~v~~~~~~~~ 158 (379)
T 3jrp_A 90 RWSQIAVHAVH--SASVNSVQWAPHEYGPLLLVASSD-------GKVSVVEFKENGTTSPIIIDAH--AIGVNSASWAPA 158 (379)
T ss_dssp EEEEEEEECCC--SSCEEEEEECCGGGCSEEEEEETT-------SEEEEEECCTTSCCCEEEEECC--TTCEEEEEECCC
T ss_pred ceeEeeeecCC--CcceEEEEeCCCCCCCEEEEecCC-------CcEEEEecCCCCceeeEEecCC--CCceEEEEEcCc
Confidence 87665322111 122223333334 5677777763 3578888876532211100000 1111122222
Q ss_pred ------------cCEEEEEeccCCCCccCeEEEEECCCC--cEEEeeecCCCCCcccceEEEE-EC---CEEEEEeccCC
Q 006334 190 ------------ANRLFVYGGDCGDQYHGDIDMLDMNSL--TWSRLAIIGSSPGVRAGHAAIN-IG---TKVYIIGGVGD 251 (650)
Q Consensus 190 ------------~~~Iyv~GG~~~~~~~n~v~~yd~~t~--~W~~i~~~g~~P~~R~~~s~v~-~~---~~IyI~GG~~~ 251 (650)
++.+++.|+.++ .+..||+.+. .|..+...... ...-.+++. .+ +.+++.|+.++
T Consensus 159 ~~~~~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~h--~~~v~~~~~sp~~~~~~~l~s~~~dg 231 (379)
T 3jrp_A 159 TIEEDGEHNGTKESRKFVTGGADN-----LVKIWKYNSDAQTYVLESTLEGH--SDWVRDVAWSPTVLLRSYLASVSQDR 231 (379)
T ss_dssp C----------CTTCEEEEEETTS-----CEEEEEEETTTTEEEEEEEECCC--SSCEEEEEECCCCSSSEEEEEEETTS
T ss_pred cccccccccCCCCCCEEEEEeCCC-----eEEEEEecCCCcceeeEEEEecc--cCcEeEEEECCCCCCCCeEEEEeCCC
Confidence 366777777653 6777876543 35554422111 111122222 23 57888877543
Q ss_pred CcccCeEEEEECCCC
Q 006334 252 KHYYNDIWILNVSTC 266 (650)
Q Consensus 252 ~~~~~dv~~yD~~t~ 266 (650)
.+.+||+.+.
T Consensus 232 -----~i~iwd~~~~ 241 (379)
T 3jrp_A 232 -----TCIIWTQDNE 241 (379)
T ss_dssp -----CEEEEEESST
T ss_pred -----EEEEEeCCCC
Confidence 4788888775
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=96.29 E-value=1.1 Score=47.21 Aligned_cols=211 Identities=13% Similarity=0.106 Sum_probs=105.6
Q ss_pred eEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEE
Q 006334 54 DVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTA 133 (650)
Q Consensus 54 dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~ 133 (650)
.+.+||..++.....-.. ....-.+...++..++.|+.+ ..+..||+.+.+-...- .+ . ...-..
T Consensus 180 ~i~vwd~~~~~~~~~~~~-----h~~~v~~~~~~~~~l~s~s~d-----g~i~~wd~~~~~~~~~~-~~-~---~~~v~~ 244 (445)
T 2ovr_B 180 TLKVWNAETGECIHTLYG-----HTSTVRCMHLHEKRVVSGSRD-----ATLRVWDIETGQCLHVL-MG-H---VAAVRC 244 (445)
T ss_dssp CEEEEETTTTEEEEEECC-----CSSCEEEEEEETTEEEEEETT-----SEEEEEESSSCCEEEEE-EC-C---SSCEEE
T ss_pred eEEEEECCcCcEEEEECC-----CCCcEEEEEecCCEEEEEeCC-----CEEEEEECCCCcEEEEE-cC-C---cccEEE
Confidence 466777766643322111 111112222334445566543 36888888876543321 11 1 111122
Q ss_pred EEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeeecCEEEEEeccCCCCccCeEEEEEC
Q 006334 134 TLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDM 213 (650)
Q Consensus 134 ~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~ 213 (650)
+.. ++.+++.|+.+ ..+.+||+.+.+-... +.........+..++..++.|+.+ +.+..||+
T Consensus 245 ~~~-~~~~l~~~~~d-------g~i~iwd~~~~~~~~~-----~~~~~~~v~~~~~~~~~l~~~~~d-----~~i~i~d~ 306 (445)
T 2ovr_B 245 VQY-DGRRVVSGAYD-------FMVKVWDPETETCLHT-----LQGHTNRVYSLQFDGIHVVSGSLD-----TSIRVWDV 306 (445)
T ss_dssp EEE-CSSCEEEEETT-------SCEEEEEGGGTEEEEE-----ECCCSSCEEEEEECSSEEEEEETT-----SCEEEEET
T ss_pred EEE-CCCEEEEEcCC-------CEEEEEECCCCcEeEE-----ecCCCCceEEEEECCCEEEEEeCC-----CeEEEEEC
Confidence 223 56677777763 3578888876543321 111111223334466777777755 46899998
Q ss_pred CCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCcEEEeecCCCCCCCcceeEEEEECCeE
Q 006334 214 NSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVTGSDI 293 (650)
Q Consensus 214 ~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~~~~~~p~~R~~hsav~~~~~l 293 (650)
.+.+-...- ........+...++.+++.|+.+ ..+.+||+.+.+-...-.. .......-.++..++.+
T Consensus 307 ~~~~~~~~~-----~~~~~~v~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~ 374 (445)
T 2ovr_B 307 ETGNCIHTL-----TGHQSLTSGMELKDNILVSGNAD-----STVKIWDIKTGQCLQTLQG--PNKHQSAVTCLQFNKNF 374 (445)
T ss_dssp TTCCEEEEE-----CCCCSCEEEEEEETTEEEEEETT-----SCEEEEETTTCCEEEEECS--TTSCSSCEEEEEECSSE
T ss_pred CCCCEEEEE-----cCCcccEEEEEEeCCEEEEEeCC-----CeEEEEECCCCcEEEEEcc--CCCCCCCEEEEEECCCE
Confidence 876543221 01111223334455566676643 3689999987654332110 01111222344456777
Q ss_pred EEEcCCCCCCCCCCcEEEEecC
Q 006334 294 VIYGGCGEDERPLNELLVLQLG 315 (650)
Q Consensus 294 yV~GG~~~~~~~~~d~~~l~l~ 315 (650)
++.|+.+ ..+.++++.
T Consensus 375 l~s~~~d------g~v~iwd~~ 390 (445)
T 2ovr_B 375 VITSSDD------GTVKLWDLK 390 (445)
T ss_dssp EEEEETT------SEEEEEETT
T ss_pred EEEEeCC------CeEEEEECC
Confidence 7777742 356667765
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=96.27 E-value=0.42 Score=48.50 Aligned_cols=151 Identities=11% Similarity=0.081 Sum_probs=78.6
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCcCcCeEEEEECCCCcE
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW-GHKMIVFGGTNGYKKVNDLHILDLESKEW 115 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~-~~~lyVfGG~~~~~~~ndv~~yD~~t~~W 115 (650)
++.+++.|+.+ ..+.+||..+..|..+..... ....-.++.+. ++++++.|+.++ .+..||+.+.++
T Consensus 19 ~~~~l~~~~~d-----~~v~i~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~ 86 (372)
T 1k8k_C 19 DRTQIAICPNN-----HEVHIYEKSGNKWVQVHELKE--HNGQVTGVDWAPDSNRIVTCGTDR-----NAYVWTLKGRTW 86 (372)
T ss_dssp TSSEEEEECSS-----SEEEEEEEETTEEEEEEEEEC--CSSCEEEEEEETTTTEEEEEETTS-----CEEEEEEETTEE
T ss_pred CCCEEEEEeCC-----CEEEEEeCCCCcEEeeeeecC--CCCcccEEEEeCCCCEEEEEcCCC-----eEEEEECCCCee
Confidence 45666677643 468899998887665544311 11112233333 567777777543 578888888877
Q ss_pred EeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCc-eeeccccCCCCCCCCcceeeee-cCEE
Q 006334 116 MRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMR-WASPAVKGDIPVPRDSHSSNVI-ANRL 193 (650)
Q Consensus 116 ~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~-Wt~i~~~~~lP~~R~~hs~v~~-~~~I 193 (650)
....... .....-.++....++.+++.|+.+ ..+.+||+.+.. |...... ..+....-.++... ++.+
T Consensus 87 ~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d-------~~v~i~d~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~ 156 (372)
T 1k8k_C 87 KPTLVIL--RINRAARCVRWAPNEKKFAVGSGS-------RVISICYFEQENDWWVCKHI-KKPIRSTVLSLDWHPNSVL 156 (372)
T ss_dssp EEEEECC--CCSSCEEEEEECTTSSEEEEEETT-------SSEEEEEEETTTTEEEEEEE-CTTCCSCEEEEEECTTSSE
T ss_pred eeeEEee--cCCCceeEEEECCCCCEEEEEeCC-------CEEEEEEecCCCcceeeeee-ecccCCCeeEEEEcCCCCE
Confidence 6542111 112222333444466777777753 246667765543 3222111 01111111222222 4567
Q ss_pred EEEeccCCCCccCeEEEEECC
Q 006334 194 FVYGGDCGDQYHGDIDMLDMN 214 (650)
Q Consensus 194 yv~GG~~~~~~~n~v~~yd~~ 214 (650)
++.|+.+ ..+..||+.
T Consensus 157 l~~~~~d-----g~i~~~d~~ 172 (372)
T 1k8k_C 157 LAAGSCD-----FKCRIFSAY 172 (372)
T ss_dssp EEEEETT-----SCEEEEECC
T ss_pred EEEEcCC-----CCEEEEEcc
Confidence 7777754 467888854
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=96.19 E-value=0.25 Score=52.59 Aligned_cols=203 Identities=11% Similarity=0.093 Sum_probs=110.4
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCE-EEEEcccCCCcCcCeEEEEECCCCc
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW-GHK-MIVFGGTNGYKKVNDLHILDLESKE 114 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~-~~~-lyVfGG~~~~~~~ndv~~yD~~t~~ 114 (650)
++..+++++.... ...++++|+.+++...+... .....+.++. +++ |++.+..++ ...+|.+|+.+.+
T Consensus 189 dg~~la~~s~~~~--~~~i~~~d~~tg~~~~l~~~-----~~~~~~~~~spdg~~la~~~~~~g---~~~i~~~d~~~~~ 258 (415)
T 2hqs_A 189 DGSKLAYVTFESG--RSALVIQTLANGAVRQVASF-----PRHNGAPAFSPDGSKLAFALSKTG---SLNLYVMDLASGQ 258 (415)
T ss_dssp TSSEEEEEECTTS--SCEEEEEETTTCCEEEEECC-----SSCEEEEEECTTSSEEEEEECTTS---SCEEEEEETTTCC
T ss_pred CCCEEEEEEecCC--CcEEEEEECCCCcEEEeecC-----CCcccCEEEcCCCCEEEEEEecCC---CceEEEEECCCCC
Confidence 3455555554321 25799999999887765433 1122233332 555 444443322 3579999999988
Q ss_pred EEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeee-ecCEE
Q 006334 115 WMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNV-IANRL 193 (650)
Q Consensus 115 W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~-~~~~I 193 (650)
...+.. . ...........+++.+++++..+. ...+|++|+.+.....+.. .......++. -+++.
T Consensus 259 ~~~l~~---~--~~~~~~~~~spdg~~l~~~s~~~g----~~~i~~~d~~~~~~~~l~~-----~~~~~~~~~~spdG~~ 324 (415)
T 2hqs_A 259 IRQVTD---G--RSNNTEPTWFPDSQNLAFTSDQAG----RPQVYKVNINGGAPQRITW-----EGSQNQDADVSSDGKF 324 (415)
T ss_dssp EEECCC---C--SSCEEEEEECTTSSEEEEEECTTS----SCEEEEEETTSSCCEECCC-----SSSEEEEEEECTTSSE
T ss_pred EEeCcC---C--CCcccceEECCCCCEEEEEECCCC----CcEEEEEECCCCCEEEEec-----CCCcccCeEECCCCCE
Confidence 766521 1 111223333446665555553211 2468999998776544331 1111112222 24555
Q ss_pred EEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCcEEEee
Q 006334 194 FVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLD 272 (650)
Q Consensus 194 yv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~ 272 (650)
+++++.... ...++++|+.+.+...+... ......+..-+++.+++++..+. ...+|.+|+.......+.
T Consensus 325 l~~~~~~~g--~~~i~~~d~~~~~~~~l~~~-----~~~~~~~~spdg~~l~~~s~~~~--~~~l~~~d~~g~~~~~l~ 394 (415)
T 2hqs_A 325 MVMVSSNGG--QQHIAKQDLATGGVQVLSST-----FLDETPSLAPNGTMVIYSSSQGM--GSVLNLVSTDGRFKARLP 394 (415)
T ss_dssp EEEEEECSS--CEEEEEEETTTCCEEECCCS-----SSCEEEEECTTSSEEEEEEEETT--EEEEEEEETTSCCEEECC
T ss_pred EEEEECcCC--ceEEEEEECCCCCEEEecCC-----CCcCCeEEcCCCCEEEEEEcCCC--ccEEEEEECCCCcEEEee
Confidence 555553321 35799999999888665421 12222222335666666664332 347999999888777664
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=96.12 E-value=0.8 Score=44.39 Aligned_cols=226 Identities=14% Similarity=0.067 Sum_probs=113.5
Q ss_pred CCEEEE-EccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCcCcCeEEEEECCCCc
Q 006334 37 HGAVYI-FGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW-GHKMIVFGGTNGYKKVNDLHILDLESKE 114 (650)
Q Consensus 37 ~~~Iyv-fGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~-~~~lyVfGG~~~~~~~ndv~~yD~~t~~ 114 (650)
++.||+ .... .+.+++||..+.........+ ...-+++++. +++|||... .+.+++||+.+..
T Consensus 34 ~g~l~v~~~~~-----~~~i~~~~~~~~~~~~~~~~~----~~~p~~i~~~~~g~l~v~~~------~~~i~~~d~~~~~ 98 (270)
T 1rwi_B 34 AGNVYVTSEGM-----YGRVVKLATGSTGTTVLPFNG----LYQPQGLAVDGAGTVYVTDF------NNRVVTLAAGSNN 98 (270)
T ss_dssp TCCEEEEECSS-----SCEEEEECC-----EECCCCS----CCSCCCEEECTTCCEEEEET------TTEEEEECTTCSC
T ss_pred CCCEEEEccCC-----CCcEEEecCCCcccceEeeCC----cCCcceeEECCCCCEEEEcC------CCEEEEEeCCCce
Confidence 468888 4332 246888988776554432211 1122344444 567888654 2478999988775
Q ss_pred EEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee-cCEE
Q 006334 115 WMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI-ANRL 193 (650)
Q Consensus 115 W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~-~~~I 193 (650)
...+.. .....-..+++..+++||+.... .+.+++||..+........ ..+. .-..++.. ++.+
T Consensus 99 ~~~~~~----~~~~~p~~i~~~~~g~l~v~~~~-------~~~i~~~~~~~~~~~~~~~-~~~~---~p~~i~~~~~g~l 163 (270)
T 1rwi_B 99 QTVLPF----DGLNYPEGLAVDTQGAVYVADRG-------NNRVVKLAAGSKTQTVLPF-TGLN---DPDGVAVDNSGNV 163 (270)
T ss_dssp CEECCC----CSCSSEEEEEECTTCCEEEEEGG-------GTEEEEECTTCCSCEECCC-CSCC---SCCCEEECTTCCE
T ss_pred Eeeeec----CCcCCCcceEECCCCCEEEEECC-------CCEEEEEECCCceeEeecc-ccCC---CceeEEEeCCCCE
Confidence 544311 11122234444446788886432 2358888766554432211 1111 11223332 4678
Q ss_pred EEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEE-CCEEEEEeccCCCcccCeEEEEECCCCcEEEee
Q 006334 194 FVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINI-GTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLD 272 (650)
Q Consensus 194 yv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~-~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~ 272 (650)
|+.... .+.+++||+....-...... .. ..-..++.. ++.||+.... ...+++||+....-..+.
T Consensus 164 ~v~~~~-----~~~i~~~~~~~~~~~~~~~~-~~---~~p~~i~~d~~g~l~v~~~~-----~~~v~~~~~~~~~~~~~~ 229 (270)
T 1rwi_B 164 YVTDTD-----NNRVVKLEAESNNQVVLPFT-DI---TAPWGIAVDEAGTVYVTEHN-----TNQVVKLLAGSTTSTVLP 229 (270)
T ss_dssp EEEEGG-----GTEEEEECTTTCCEEECCCS-SC---CSEEEEEECTTCCEEEEETT-----TSCEEEECTTCSCCEECC
T ss_pred EEEECC-----CCEEEEEecCCCceEeeccc-CC---CCceEEEECCCCCEEEEECC-----CCcEEEEcCCCCcceeec
Confidence 887542 25789999887664433211 11 112233333 3478887432 246899998776433322
Q ss_pred cCCCCCCCcceeEEEEE-CCeEEEEcCCCCCCCCCCcEEEEecCC
Q 006334 273 TCGQQPQGRFSHAAVVT-GSDIVIYGGCGEDERPLNELLVLQLGA 316 (650)
Q Consensus 273 ~~~~~p~~R~~hsav~~-~~~lyV~GG~~~~~~~~~d~~~l~l~~ 316 (650)
. .....-.++++. ++.|||.... .+.+.++++..
T Consensus 230 ~----~~~~~p~~i~~~~~g~l~v~~~~------~~~v~~~~~~~ 264 (270)
T 1rwi_B 230 F----TGLNTPLAVAVDSDRTVYVADRG------NDRVVKLTSLE 264 (270)
T ss_dssp C----CSCSCEEEEEECTTCCEEEEEGG------GTEEEEECCCG
T ss_pred c----CCCCCceeEEECCCCCEEEEECC------CCEEEEEcCCC
Confidence 1 111112233333 4678887542 24667776653
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.10 E-value=1.3 Score=44.99 Aligned_cols=178 Identities=13% Similarity=0.170 Sum_probs=93.9
Q ss_pred ceEEEEECCCCcEEEeecCCCCCCCCcceEEEE-ECCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCccc
Q 006334 53 GDVLMLNLDTMVWSTLATTGQGPGPRDSHSAIL-WGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESH 131 (650)
Q Consensus 53 ~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~-~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h 131 (650)
..+.++|..+..-....... + ....++++ .+++.++.|+.+ ..+..||..+..-...- . .......
T Consensus 102 ~~i~lWd~~~~~~~~~~~~~--~--~~~~~~~~spdg~~l~~g~~d-----g~v~i~~~~~~~~~~~~-~---~~~~~v~ 168 (321)
T 3ow8_A 102 AHIRLWDLENGKQIKSIDAG--P--VDAWTLAFSPDSQYLATGTHV-----GKVNIFGVESGKKEYSL-D---TRGKFIL 168 (321)
T ss_dssp SEEEEEETTTTEEEEEEECC--T--TCCCCEEECTTSSEEEEECTT-----SEEEEEETTTCSEEEEE-E---CSSSCEE
T ss_pred CcEEEEECCCCCEEEEEeCC--C--ccEEEEEECCCCCEEEEEcCC-----CcEEEEEcCCCceeEEe-c---CCCceEE
Confidence 36788898877644322221 1 11122333 356777777653 35788888876543210 0 1112233
Q ss_pred EEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee-cCEEEEEeccCCCCccCeEEE
Q 006334 132 TATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI-ANRLFVYGGDCGDQYHGDIDM 210 (650)
Q Consensus 132 s~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~-~~~Iyv~GG~~~~~~~n~v~~ 210 (650)
++....++++++.|+.+ ..+.+||+.+.+-...- . ....+ -.++... ++.+++.|+.+ ..+.+
T Consensus 169 ~~~~spdg~~lasg~~d-------g~i~iwd~~~~~~~~~~-~-~h~~~--v~~l~~spd~~~l~s~s~d-----g~i~i 232 (321)
T 3ow8_A 169 SIAYSPDGKYLASGAID-------GIINIFDIATGKLLHTL-E-GHAMP--IRSLTFSPDSQLLVTASDD-----GYIKI 232 (321)
T ss_dssp EEEECTTSSEEEEEETT-------SCEEEEETTTTEEEEEE-C-CCSSC--CCEEEECTTSCEEEEECTT-----SCEEE
T ss_pred EEEECCCCCEEEEEcCC-------CeEEEEECCCCcEEEEE-c-ccCCc--eeEEEEcCCCCEEEEEcCC-----CeEEE
Confidence 44444567788888763 35888998876543211 0 10001 1122222 46677777765 36889
Q ss_pred EECCCCcEEEeeecCCCCCcccceEEEEE--CCEEEEEeccCCCcccCeEEEEECCCCcEE
Q 006334 211 LDMNSLTWSRLAIIGSSPGVRAGHAAINI--GTKVYIIGGVGDKHYYNDIWILNVSTCSWS 269 (650)
Q Consensus 211 yd~~t~~W~~i~~~g~~P~~R~~~s~v~~--~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~ 269 (650)
||+.+......- .........+.+ ++++++.|+.++ .+.+||+.+.+-.
T Consensus 233 wd~~~~~~~~~~-----~~h~~~v~~~~~sp~~~~l~s~s~D~-----~v~iwd~~~~~~~ 283 (321)
T 3ow8_A 233 YDVQHANLAGTL-----SGHASWVLNVAFCPDDTHFVSSSSDK-----SVKVWDVGTRTCV 283 (321)
T ss_dssp EETTTCCEEEEE-----CCCSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTTEEE
T ss_pred EECCCcceeEEE-----cCCCCceEEEEECCCCCEEEEEeCCC-----cEEEEeCCCCEEE
Confidence 998876644321 111111222222 456777776543 5888999876543
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.77 Score=47.92 Aligned_cols=218 Identities=11% Similarity=0.107 Sum_probs=106.4
Q ss_pred eEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEE
Q 006334 54 DVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTA 133 (650)
Q Consensus 54 dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~ 133 (650)
.+.+||..+......-.. ......++..++.+++.|+.+ ..+..+|+....-......+ ....-.++
T Consensus 157 ~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~---~~~~v~~~ 223 (401)
T 4aez_A 157 LVDIYDVESQTKLRTMAG-----HQARVGCLSWNRHVLSSGSRS-----GAIHHHDVRIANHQIGTLQG---HSSEVCGL 223 (401)
T ss_dssp CEEEEETTTCCEEEEECC-----CSSCEEEEEEETTEEEEEETT-----SEEEEEETTSSSCEEEEEEC---CSSCEEEE
T ss_pred eEEEEECcCCeEEEEecC-----CCCceEEEEECCCEEEEEcCC-----CCEEEEecccCcceeeEEcC---CCCCeeEE
Confidence 567777776654332211 111122233355667777654 36888888743321111111 11122333
Q ss_pred EEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee--cCEEEEEeccCCCCccCeEEEE
Q 006334 134 TLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI--ANRLFVYGGDCGDQYHGDIDML 211 (650)
Q Consensus 134 ~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~--~~~Iyv~GG~~~~~~~n~v~~y 211 (650)
....++.+++.|+.+ +.+.+||+.+..-...- ... ...-.++... +..+++.||... -..+..|
T Consensus 224 ~~~~~~~~l~s~~~d-------~~v~iwd~~~~~~~~~~--~~~--~~~v~~~~~~p~~~~ll~~~~gs~---d~~i~i~ 289 (401)
T 4aez_A 224 AWRSDGLQLASGGND-------NVVQIWDARSSIPKFTK--TNH--NAAVKAVAWCPWQSNLLATGGGTM---DKQIHFW 289 (401)
T ss_dssp EECTTSSEEEEEETT-------SCEEEEETTCSSEEEEE--CCC--SSCCCEEEECTTSTTEEEEECCTT---TCEEEEE
T ss_pred EEcCCCCEEEEEeCC-------CeEEEccCCCCCccEEe--cCC--cceEEEEEECCCCCCEEEEecCCC---CCEEEEE
Confidence 444467778888763 35888998765432211 011 1111222222 346777765211 2578999
Q ss_pred ECCCCcEEEeeecCCCCCcccceEEEEE-CC-EEEEEeccCCCcccCeEEEEECCCCcEEEeecCCCCCCCcceeEEEEE
Q 006334 212 DMNSLTWSRLAIIGSSPGVRAGHAAINI-GT-KVYIIGGVGDKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVT 289 (650)
Q Consensus 212 d~~t~~W~~i~~~g~~P~~R~~~s~v~~-~~-~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~~~~~~p~~R~~hsav~~ 289 (650)
|+.+.+....-.. . ..-.+++.. ++ .+++.+|..+ ..+.+||+.+.....+.... ....+.. ++++.
T Consensus 290 d~~~~~~~~~~~~---~--~~v~~~~~s~~~~~l~~~~g~~d----g~i~v~~~~~~~~~~~~~~~-~h~~~v~-~~~~s 358 (401)
T 4aez_A 290 NAATGARVNTVDA---G--SQVTSLIWSPHSKEIMSTHGFPD----NNLSIWSYSSSGLTKQVDIP-AHDTRVL-YSALS 358 (401)
T ss_dssp ETTTCCEEEEEEC---S--SCEEEEEECSSSSEEEEEECTTT----CEEEEEEEETTEEEEEEEEE-CCSSCCC-EEEEC
T ss_pred ECCCCCEEEEEeC---C--CcEEEEEECCCCCeEEEEeecCC----CcEEEEecCCccceeEEEec-CCCCCEE-EEEEC
Confidence 9887764433211 1 111222222 33 4555545433 36889998887766653210 1112222 22333
Q ss_pred -CCeEEEEcCCCCCCCCCCcEEEEecC
Q 006334 290 -GSDIVIYGGCGEDERPLNELLVLQLG 315 (650)
Q Consensus 290 -~~~lyV~GG~~~~~~~~~d~~~l~l~ 315 (650)
++.+++.||.+ ..+.++++.
T Consensus 359 ~dg~~l~s~~~d------g~i~iw~~~ 379 (401)
T 4aez_A 359 PDGRILSTAASD------ENLKFWRVY 379 (401)
T ss_dssp TTSSEEEEECTT------SEEEEEECC
T ss_pred CCCCEEEEEeCC------CcEEEEECC
Confidence 56677777742 356666664
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=1.3 Score=44.57 Aligned_cols=201 Identities=11% Similarity=0.026 Sum_probs=115.3
Q ss_pred cceEEEEEC-CEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccce
Q 006334 79 DSHSAILWG-HKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLND 157 (650)
Q Consensus 79 ~~hsa~~~~-~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~d 157 (650)
+-+.+.+.+ +.||+..|..+ .+.+.++|+.+++-... ...+...+..+++.. +++||+..-. -+.
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~---~s~v~~iD~~tg~v~~~---i~l~~~~fgeGi~~~-g~~lyv~t~~-------~~~ 87 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYG---RSSVRQVALQTGKVENI---HKMDDSYFGEGLTLL-NEKLYQVVWL-------KNI 87 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTT---TCEEEEEETTTCCEEEE---EECCTTCCEEEEEEE-TTEEEEEETT-------CSE
T ss_pred CcccEEEeCCCeEEEECCCCC---CCEEEEEECCCCCEEEE---EecCCCcceEEEEEe-CCEEEEEEec-------CCE
Confidence 346777765 89999876321 36799999999875542 112222334455555 5899997543 257
Q ss_pred EEEEecCCCceee-ccccCCCCCCCCcceeeeecCEEEEEeccCCCCccCeEEEEECCCCcEE-EeeecCCCCCcc-cce
Q 006334 158 LHVLDLKTMRWAS-PAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWS-RLAIIGSSPGVR-AGH 234 (650)
Q Consensus 158 v~~yd~~t~~Wt~-i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~-~i~~~g~~P~~R-~~~ 234 (650)
+++||..+.+-.. ++ .+ .| .+..++..++++|+.-| .+.++.+|+.+.+-. .+.. +..+.+. .-.
T Consensus 88 v~viD~~t~~v~~~i~-~g-~~---~g~glt~Dg~~l~vs~g------s~~l~viD~~t~~v~~~I~V-g~~~~p~~~~n 155 (266)
T 2iwa_A 88 GFIYDRRTLSNIKNFT-HQ-MK---DGWGLATDGKILYGSDG------TSILYEIDPHTFKLIKKHNV-KYNGHRVIRLN 155 (266)
T ss_dssp EEEEETTTTEEEEEEE-CC-SS---SCCEEEECSSSEEEECS------SSEEEEECTTTCCEEEEEEC-EETTEECCCEE
T ss_pred EEEEECCCCcEEEEEE-CC-CC---CeEEEEECCCEEEEECC------CCeEEEEECCCCcEEEEEEE-CCCCcccccce
Confidence 9999998764332 22 11 12 23344444577888654 368999999987643 3332 1111111 112
Q ss_pred EEEEECCEEEEEeccCCCcccCeEEEEECCCCc---EEEeecC------CCCCCCcceeEEEEE--CCeEEEEcCCCCCC
Q 006334 235 AAINIGTKVYIIGGVGDKHYYNDIWILNVSTCS---WSQLDTC------GQQPQGRFSHAAVVT--GSDIVIYGGCGEDE 303 (650)
Q Consensus 235 s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~---W~~l~~~------~~~p~~R~~hsav~~--~~~lyV~GG~~~~~ 303 (650)
.+...++++|+-- ...+++.+.|+++.+ |..+... ...+..-.-.+.++. ++.+||.|+..
T Consensus 156 ele~~dg~lyvn~-----~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~--- 227 (266)
T 2iwa_A 156 ELEYINGEVWANI-----WQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLW--- 227 (266)
T ss_dssp EEEEETTEEEEEE-----TTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTC---
T ss_pred eEEEECCEEEEec-----CCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCC---
Confidence 3334478888662 224689999999885 3333210 000111122455555 35799998753
Q ss_pred CCCCcEEEEecCC
Q 006334 304 RPLNELLVLQLGA 316 (650)
Q Consensus 304 ~~~~d~~~l~l~~ 316 (650)
+.++++++..
T Consensus 228 ---~~v~~i~l~~ 237 (266)
T 2iwa_A 228 ---PKLFEIKLHL 237 (266)
T ss_dssp ---SEEEEEEEEE
T ss_pred ---CeEEEEEEec
Confidence 5778887753
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=96.07 E-value=1.3 Score=44.00 Aligned_cols=191 Identities=10% Similarity=0.086 Sum_probs=96.5
Q ss_pred CEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEE-ECCEEEEEcccCCCcCcCeEEEEECCCCcEE
Q 006334 38 GAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAIL-WGHKMIVFGGTNGYKKVNDLHILDLESKEWM 116 (650)
Q Consensus 38 ~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~-~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~ 116 (650)
+.+++.|+.+ ..+.+||..+..-...-.. . ...-.++.+ .++.+++.|+.++ .+..+|+.+.+-.
T Consensus 77 ~~~l~s~~~d-----~~i~vwd~~~~~~~~~~~~-~---~~~v~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~ 142 (312)
T 4ery_A 77 SNLLVSASDD-----KTLKIWDVSSGKCLKTLKG-H---SNYVFCCNFNPQSNLIVSGSFDE-----SVRIWDVKTGKCL 142 (312)
T ss_dssp SSEEEEEETT-----SEEEEEETTTCCEEEEEEC-C---SSCEEEEEECSSSSEEEEEETTS-----CEEEEETTTCCEE
T ss_pred CCEEEEECCC-----CEEEEEECCCCcEEEEEcC-C---CCCEEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCEEE
Confidence 4455555532 3678888887654332111 0 011112222 2566777777644 5888999877643
Q ss_pred eeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee--cCEEE
Q 006334 117 RPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI--ANRLF 194 (650)
Q Consensus 117 ~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~--~~~Iy 194 (650)
..- . . ....-.++....++.+++.|+.+ ..+.+||+.+.+....... . .......+.+ ++..+
T Consensus 143 ~~~-~-~--~~~~v~~~~~~~~~~~l~~~~~d-------~~i~~wd~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~l 207 (312)
T 4ery_A 143 KTL-P-A--HSDPVSAVHFNRDGSLIVSSSYD-------GLCRIWDTASGQCLKTLID-D---DNPPVSFVKFSPNGKYI 207 (312)
T ss_dssp EEE-C-C--CSSCEEEEEECTTSSEEEEEETT-------SCEEEEETTTCCEEEEECC-S---SCCCEEEEEECTTSSEE
T ss_pred EEe-c-C--CCCcEEEEEEcCCCCEEEEEeCC-------CcEEEEECCCCceeeEEec-c---CCCceEEEEECCCCCEE
Confidence 321 0 1 11112233333456777888763 2588899877654321100 0 0011112222 45666
Q ss_pred EEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEE-ECCEEEEEeccCCCcccCeEEEEECCCCcE
Q 006334 195 VYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAIN-IGTKVYIIGGVGDKHYYNDIWILNVSTCSW 268 (650)
Q Consensus 195 v~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~-~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W 268 (650)
+.|+.+ +.+..||+.+.+-...-. +............. .++.+++.|+.+ ..+.+||+.+..-
T Consensus 208 ~~~~~d-----~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~sg~~d-----g~i~vwd~~~~~~ 271 (312)
T 4ery_A 208 LAATLD-----NTLKLWDYSKGKCLKTYT-GHKNEKYCIFANFSVTGGKWIVSGSED-----NLVYIWNLQTKEI 271 (312)
T ss_dssp EEEETT-----TEEEEEETTTTEEEEEEC-SSCCSSSCCCEEEECSSSCEEEECCTT-----SCEEEEETTTCCE
T ss_pred EEEcCC-----CeEEEEECCCCcEEEEEE-ecCCceEEEEEEEEeCCCcEEEEECCC-----CEEEEEECCCchh
Confidence 666654 478999988775433221 11111111112222 345677777654 3588999987753
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.58 Score=52.85 Aligned_cols=194 Identities=10% Similarity=0.057 Sum_probs=97.7
Q ss_pred cCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCC-ceeeccccCCCCCC
Q 006334 102 VNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTM-RWASPAVKGDIPVP 180 (650)
Q Consensus 102 ~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~-~Wt~i~~~~~lP~~ 180 (650)
...++++|+.+.+...+... ..............+++.++++..+. ......++++|+.+. .+..+..... ...
T Consensus 234 ~~~l~~~d~~~~~~~~~~~~--~~~~~~~~~~~~spdg~~l~~~~~~~--~~~~~~v~~~d~~~g~~~~~~~~~~~-~~~ 308 (706)
T 2z3z_A 234 HVTVGIYHLATGKTVYLQTG--EPKEKFLTNLSWSPDENILYVAEVNR--AQNECKVNAYDAETGRFVRTLFVETD-KHY 308 (706)
T ss_dssp EEEEEEEETTTTEEEECCCC--SCTTCEEEEEEECTTSSEEEEEEECT--TSCEEEEEEEETTTCCEEEEEEEEEC-SSC
T ss_pred eeEEEEEECCCCceEeeccC--CCCceeEeeEEEECCCCEEEEEEeCC--CCCeeEEEEEECCCCceeeEEEEccC-CCe
Confidence 36799999998876654211 11112222334445666555554422 122457899999887 6654431111 000
Q ss_pred C-Ccceeee-e--cCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECC-EEEEEeccCCCccc
Q 006334 181 R-DSHSSNV-I--ANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGT-KVYIIGGVGDKHYY 255 (650)
Q Consensus 181 R-~~hs~v~-~--~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~-~IyI~GG~~~~~~~ 255 (650)
. ....+.. - ++++++.+..++ ...+|.+|........+.. -........+..-++ .||+.+ ..+....
T Consensus 309 ~~~~~~~~~sp~~dg~~l~~~~~~g---~~~l~~~~~~~~~~~~l~~---~~~~v~~~~~~spdg~~l~~~~-~~~~~~~ 381 (706)
T 2z3z_A 309 VEPLHPLTFLPGSNNQFIWQSRRDG---WNHLYLYDTTGRLIRQVTK---GEWEVTNFAGFDPKGTRLYFES-TEASPLE 381 (706)
T ss_dssp CCCCSCCEECTTCSSEEEEEECTTS---SCEEEEEETTSCEEEECCC---SSSCEEEEEEECTTSSEEEEEE-SSSCTTC
T ss_pred ECccCCceeecCCCCEEEEEEccCC---ccEEEEEECCCCEEEecCC---CCeEEEeeeEEcCCCCEEEEEe-cCCCCce
Confidence 0 0012222 2 567655554432 3678999977777766641 111111111122234 455554 3333234
Q ss_pred CeEEEEECCCCcEEEeecCCCCCCCcceeEEEEE-CCeEEEEcCCCCCCCCCCcEEEEecC
Q 006334 256 NDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVT-GSDIVIYGGCGEDERPLNELLVLQLG 315 (650)
Q Consensus 256 ~dv~~yD~~t~~W~~l~~~~~~p~~R~~hsav~~-~~~lyV~GG~~~~~~~~~d~~~l~l~ 315 (650)
..+|.+|+.+.....+.. ....+.+.+. +++.+++..... ....+++++++.
T Consensus 382 ~~l~~~d~~~~~~~~l~~------~~~~~~~~~spdg~~l~~~~~~~--~~p~~i~l~d~~ 434 (706)
T 2z3z_A 382 RHFYCIDIKGGKTKDLTP------ESGMHRTQLSPDGSAIIDIFQSP--TVPRKVTVTNIG 434 (706)
T ss_dssp BEEEEEETTCCCCEESCC------SSSEEEEEECTTSSEEEEEEECS--SCSCEEEEEESS
T ss_pred EEEEEEEcCCCCceeccC------CCceEEEEECCCCCEEEEEecCC--CCCcEEEEEECC
Confidence 589999998887666542 1112333333 566666654322 123567777765
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=95.97 E-value=0.51 Score=46.90 Aligned_cols=226 Identities=14% Similarity=0.039 Sum_probs=113.8
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCcE----EEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCcCcCeEEEEECC
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMVW----STLATTGQGPGPRDSHSAILW-GHKMIVFGGTNGYKKVNDLHILDLE 111 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~sW----~~l~~~g~~P~pR~~hsa~~~-~~~lyVfGG~~~~~~~ndv~~yD~~ 111 (650)
++.+++.|+ + ..+.+||..+... ..+... .....-.++.+. ++++++.|+.+ ..+..||+.
T Consensus 62 ~~~~l~~~~-d-----g~i~iw~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~~~d~~ 127 (337)
T 1gxr_A 62 PTRHVYTGG-K-----GCVKVWDISHPGNKSPVSQLDCL---NRDNYIRSCKLLPDGCTLIVGGEA-----STLSIWDLA 127 (337)
T ss_dssp SSSEEEEEC-B-----SEEEEEETTSTTCCSCSEEEECS---CTTSBEEEEEECTTSSEEEEEESS-----SEEEEEECC
T ss_pred CCcEEEEcC-C-----CeEEEEECCCCCceeeeeccccc---CCCCcEEEEEEcCCCCEEEEEcCC-----CcEEEEECC
Confidence 455666665 3 4688889876542 111111 111112223333 56677777653 368899998
Q ss_pred CCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee-c
Q 006334 112 SKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI-A 190 (650)
Q Consensus 112 t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~-~ 190 (650)
+.++........ .......+....++.+++.|+.+ ..+.+||+.+.+....- ... ...-.++... +
T Consensus 128 ~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d-------g~v~~~d~~~~~~~~~~---~~~-~~~i~~~~~~~~ 194 (337)
T 1gxr_A 128 APTPRIKAELTS--SAPACYALAISPDSKVCFSCCSD-------GNIAVWDLHNQTLVRQF---QGH-TDGASCIDISND 194 (337)
T ss_dssp CC--EEEEEEEC--SSSCEEEEEECTTSSEEEEEETT-------SCEEEEETTTTEEEEEE---CCC-SSCEEEEEECTT
T ss_pred CCCcceeeeccc--CCCceEEEEECCCCCEEEEEeCC-------CcEEEEeCCCCceeeee---ecc-cCceEEEEECCC
Confidence 877543211111 11112233334466777777753 35888998876544321 111 1111122222 4
Q ss_pred CEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEE-ECCEEEEEeccCCCcccCeEEEEECCCCcEE
Q 006334 191 NRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAIN-IGTKVYIIGGVGDKHYYNDIWILNVSTCSWS 269 (650)
Q Consensus 191 ~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~-~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~ 269 (650)
+..++.|+.+ ..+..||+.+.+-..... .+ ..-.+++. .+++++++|+.+ ..+.+||+.+..-.
T Consensus 195 ~~~l~~~~~d-----g~i~~~d~~~~~~~~~~~---~~--~~v~~~~~s~~~~~l~~~~~~-----~~i~~~~~~~~~~~ 259 (337)
T 1gxr_A 195 GTKLWTGGLD-----NTVRSWDLREGRQLQQHD---FT--SQIFSLGYCPTGEWLAVGMES-----SNVEVLHVNKPDKY 259 (337)
T ss_dssp SSEEEEEETT-----SEEEEEETTTTEEEEEEE---CS--SCEEEEEECTTSSEEEEEETT-----SCEEEEETTSSCEE
T ss_pred CCEEEEEecC-----CcEEEEECCCCceEeeec---CC--CceEEEEECCCCCEEEEEcCC-----CcEEEEECCCCCeE
Confidence 5666777654 478999998776443321 11 11122222 245677776643 35899999887644
Q ss_pred EeecCCCCCCCcceeEEEEE-CCeEEEEcCCCCCCCCCCcEEEEecC
Q 006334 270 QLDTCGQQPQGRFSHAAVVT-GSDIVIYGGCGEDERPLNELLVLQLG 315 (650)
Q Consensus 270 ~l~~~~~~p~~R~~hsav~~-~~~lyV~GG~~~~~~~~~d~~~l~l~ 315 (650)
.+.. . ...-.++.+. ++++++.|+.+ ..+.++++.
T Consensus 260 ~~~~----~-~~~v~~~~~~~~~~~l~~~~~d------g~i~~~~~~ 295 (337)
T 1gxr_A 260 QLHL----H-ESCVLSLKFAYCGKWFVSTGKD------NLLNAWRTP 295 (337)
T ss_dssp EECC----C-SSCEEEEEECTTSSEEEEEETT------SEEEEEETT
T ss_pred EEcC----C-ccceeEEEECCCCCEEEEecCC------CcEEEEECC
Confidence 3321 1 1111223333 46677777642 356667665
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=1.2 Score=50.81 Aligned_cols=217 Identities=11% Similarity=0.050 Sum_probs=114.3
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCC-----------cCcCe
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW-GHKMIVFGGTNGY-----------KKVND 104 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~-~~~lyVfGG~~~~-----------~~~nd 104 (650)
+++.+.|+....+.....++++|+.++......... ... ..++.. +++.++++..... .....
T Consensus 135 Dg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~----~~~-~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~ 209 (710)
T 2xdw_A 135 DGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER----VKF-SCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQK 209 (710)
T ss_dssp TSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE----ECS-CCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCE
T ss_pred CCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC----ccc-ceEEEEeCCCEEEEEEECCccccccccccccCCCCE
Confidence 455555554333333348999999999887643221 111 223333 6666666655433 23467
Q ss_pred EEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCC------C--ceeeccccCC
Q 006334 105 LHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKT------M--RWASPAVKGD 176 (650)
Q Consensus 105 v~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t------~--~Wt~i~~~~~ 176 (650)
+|++++.+.......+......+..........+++.+++..... ....++++++|+.+ . .|..+..
T Consensus 210 v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~--~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~--- 284 (710)
T 2xdw_A 210 LYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREG--CDPVNRLWYCDLQQESNGITGILKWVKLID--- 284 (710)
T ss_dssp EEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECS--SSSCCEEEEEEGGGSSSSSCSSCCCEEEEC---
T ss_pred EEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEcc--CCCccEEEEEECcccccccCCccceEEeeC---
Confidence 999999887632111111111233333444455666555544311 11246899999876 4 5666541
Q ss_pred CCCCCCcceeeeecCEEEEEeccCCCCccCeEEEEECCCC---cEEEeeecCCCCCcccceEEEEE-CCEEEEEeccCCC
Q 006334 177 IPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSL---TWSRLAIIGSSPGVRAGHAAINI-GTKVYIIGGVGDK 252 (650)
Q Consensus 177 lP~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~---~W~~i~~~g~~P~~R~~~s~v~~-~~~IyI~GG~~~~ 252 (650)
.... ........++.||+.+... .....++.+|+.+. .|..+... . ....-..+... ++++++....+.
T Consensus 285 ~~~~-~~~~~s~dg~~l~~~s~~~--~~~~~l~~~d~~~~~~~~~~~l~~~--~-~~~~~~~~~~~~~~~lv~~~~~~g- 357 (710)
T 2xdw_A 285 NFEG-EYDYVTNEGTVFTFKTNRH--SPNYRLINIDFTDPEESKWKVLVPE--H-EKDVLEWVACVRSNFLVLCYLHDV- 357 (710)
T ss_dssp SSSS-CEEEEEEETTEEEEEECTT--CTTCEEEEEETTSCCGGGCEEEECC--C-SSCEEEEEEEETTTEEEEEEEETT-
T ss_pred CCCc-EEEEEeccCCEEEEEECCC--CCCCEEEEEeCCCCCcccceeccCC--C-CCCeEEEEEEEcCCEEEEEEEECC-
Confidence 1111 1111222356788776533 23467999999876 58887621 1 11122233444 667777754332
Q ss_pred cccCeEEEEECCCCc-EEEee
Q 006334 253 HYYNDIWILNVSTCS-WSQLD 272 (650)
Q Consensus 253 ~~~~dv~~yD~~t~~-W~~l~ 272 (650)
...++++|+.+++ ...+.
T Consensus 358 --~~~l~~~~~~~g~~~~~l~ 376 (710)
T 2xdw_A 358 --KNTLQLHDLATGALLKIFP 376 (710)
T ss_dssp --EEEEEEEETTTCCEEEEEC
T ss_pred --EEEEEEEECCCCCEEEecC
Confidence 3579999996554 45453
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=95.81 E-value=1.6 Score=43.89 Aligned_cols=199 Identities=9% Similarity=-0.005 Sum_probs=114.0
Q ss_pred eEEEEEC-CEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEE
Q 006334 31 HSACYSH-GAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILD 109 (650)
Q Consensus 31 hs~v~~~-~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD 109 (650)
+.+.+.+ +.||+-.|.. ..+.+.++|+.+++-...... +...+...++..+++||+..- ..+.+++||
T Consensus 24 ~Gl~~~~dg~Lyvstg~~---~~s~v~~iD~~tg~v~~~i~l---~~~~fgeGi~~~g~~lyv~t~-----~~~~v~viD 92 (266)
T 2iwa_A 24 QGLVYAENDTLFESTGLY---GRSSVRQVALQTGKVENIHKM---DDSYFGEGLTLLNEKLYQVVW-----LKNIGFIYD 92 (266)
T ss_dssp EEEEECSTTEEEEEECST---TTCEEEEEETTTCCEEEEEEC---CTTCCEEEEEEETTEEEEEET-----TCSEEEEEE
T ss_pred ccEEEeCCCeEEEECCCC---CCCEEEEEECCCCCEEEEEec---CCCcceEEEEEeCCEEEEEEe-----cCCEEEEEE
Confidence 4555555 8999977632 236799999999875543333 223455677778999999753 346899999
Q ss_pred CCCCcEEe-eecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceee-ccccCCCCCCC-Cccee
Q 006334 110 LESKEWMR-PECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWAS-PAVKGDIPVPR-DSHSS 186 (650)
Q Consensus 110 ~~t~~W~~-l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~-i~~~~~lP~~R-~~hs~ 186 (650)
+.+.+-.. ++. + .+ .+.+++. ..+++|+.-| .+.++.+|+++.+-.. +. .+..+.+. .-..+
T Consensus 93 ~~t~~v~~~i~~-g-~~---~g~glt~-Dg~~l~vs~g--------s~~l~viD~~t~~v~~~I~-Vg~~~~p~~~~nel 157 (266)
T 2iwa_A 93 RRTLSNIKNFTH-Q-MK---DGWGLAT-DGKILYGSDG--------TSILYEIDPHTFKLIKKHN-VKYNGHRVIRLNEL 157 (266)
T ss_dssp TTTTEEEEEEEC-C-SS---SCCEEEE-CSSSEEEECS--------SSEEEEECTTTCCEEEEEE-CEETTEECCCEEEE
T ss_pred CCCCcEEEEEEC-C-CC---CeEEEEE-CCCEEEEECC--------CCeEEEEECCCCcEEEEEE-ECCCCcccccceeE
Confidence 98875332 211 1 12 2333333 2467887643 2579999998865433 22 11111121 11233
Q ss_pred eeecCEEEEEeccCCCCccCeEEEEECCCCcEEE-eeecCC--------CCCcccceEEEEE--CCEEEEEeccCCCccc
Q 006334 187 NVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSR-LAIIGS--------SPGVRAGHAAINI--GTKVYIIGGVGDKHYY 255 (650)
Q Consensus 187 v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~-i~~~g~--------~P~~R~~~s~v~~--~~~IyI~GG~~~~~~~ 255 (650)
...++++|+--.. .+++.+.|+.+++-.. +...+. .+..-.-...+.. ++++||.|+.+
T Consensus 158 e~~dg~lyvn~~~-----~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~----- 227 (266)
T 2iwa_A 158 EYINGEVWANIWQ-----TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLW----- 227 (266)
T ss_dssp EEETTEEEEEETT-----SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTC-----
T ss_pred EEECCEEEEecCC-----CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCC-----
Confidence 3447888865332 3689999999886433 221110 0100111333443 35899998764
Q ss_pred CeEEEEECCC
Q 006334 256 NDIWILNVST 265 (650)
Q Consensus 256 ~dv~~yD~~t 265 (650)
+.+++.++..
T Consensus 228 ~~v~~i~l~~ 237 (266)
T 2iwa_A 228 PKLFEIKLHL 237 (266)
T ss_dssp SEEEEEEEEE
T ss_pred CeEEEEEEec
Confidence 5677776654
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=95.76 E-value=2.5 Score=44.63 Aligned_cols=149 Identities=11% Similarity=0.098 Sum_probs=85.2
Q ss_pred ECCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCC
Q 006334 86 WGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKT 165 (650)
Q Consensus 86 ~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t 165 (650)
.++.+++.|+.++ .+..||+.+.+-...- . .....-.++....++..++.|+.+ ..+.+||+.+
T Consensus 278 ~~~~~l~~~~~d~-----~i~vwd~~~~~~~~~~-~---~~~~~v~~~~~~~~~~~l~sg~~d-------g~i~vwd~~~ 341 (464)
T 3v7d_B 278 GHGNIVVSGSYDN-----TLIVWDVAQMKCLYIL-S---GHTDRIYSTIYDHERKRCISASMD-------TTIRIWDLEN 341 (464)
T ss_dssp EETTEEEEEETTS-----CEEEEETTTTEEEEEE-C---CCSSCEEEEEEETTTTEEEEEETT-------SCEEEEETTT
T ss_pred CCCCEEEEEeCCC-----eEEEEECCCCcEEEEe-c---CCCCCEEEEEEcCCCCEEEEEeCC-------CcEEEEECCC
Confidence 3455666676543 5888998876543321 1 111223344445566777777763 3588899877
Q ss_pred CceeeccccCCCCCCCCcceeeeecCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEE
Q 006334 166 MRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYI 245 (650)
Q Consensus 166 ~~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI 245 (650)
.+-... +......-..+.+++..++.|+.+ ..+.+||+.+..-..... ........+...++++++
T Consensus 342 ~~~~~~-----~~~h~~~v~~~~~~~~~l~s~s~d-----g~v~vwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~ 407 (464)
T 3v7d_B 342 GELMYT-----LQGHTALVGLLRLSDKFLVSAAAD-----GSIRGWDANDYSRKFSYH----HTNLSAITTFYVSDNILV 407 (464)
T ss_dssp TEEEEE-----ECCCSSCEEEEEECSSEEEEEETT-----SEEEEEETTTCCEEEEEE----CTTCCCEEEEEECSSEEE
T ss_pred CcEEEE-----EeCCCCcEEEEEEcCCEEEEEeCC-----CcEEEEECCCCceeeeec----CCCCccEEEEEeCCCEEE
Confidence 653321 111112223344556777777755 478899988765332221 111233344556677777
Q ss_pred EeccCCCcccCeEEEEECCCCcEEE
Q 006334 246 IGGVGDKHYYNDIWILNVSTCSWSQ 270 (650)
Q Consensus 246 ~GG~~~~~~~~dv~~yD~~t~~W~~ 270 (650)
.|+ + ..+.+||+++.+-..
T Consensus 408 ~~~-d-----g~i~iwd~~~g~~~~ 426 (464)
T 3v7d_B 408 SGS-E-----NQFNIYNLRSGKLVH 426 (464)
T ss_dssp EEE-T-----TEEEEEETTTCCEEE
T ss_pred Eec-C-----CeEEEEECCCCcEEe
Confidence 776 2 479999999887654
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.42 Score=46.23 Aligned_cols=203 Identities=10% Similarity=0.017 Sum_probs=103.9
Q ss_pred CCEEEEEccCCCCcccceEEEEECCC-CcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEECCCCcE
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDT-MVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESKEW 115 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t-~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W 115 (650)
++..+++++ ...++++|..+ .....+.... ............+++.+++++.... ....+|.+|..+...
T Consensus 52 dg~~l~~~~------~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~~~-~~~~l~~~~~~~~~~ 122 (297)
T 2ojh_A 52 DGKYLLLNS------EGLLYRLSLAGDPSPEKVDTGF--ATICNNDHGISPDGALYAISDKVEF-GKSAIYLLPSTGGTP 122 (297)
T ss_dssp TSSEEEEEE------TTEEEEEESSSCCSCEECCCTT--CCCBCSCCEECTTSSEEEEEECTTT-SSCEEEEEETTCCCC
T ss_pred CCCEEEEEc------CCeEEEEeCCCCCCceEecccc--ccccccceEECCCCCEEEEEEeCCC-CcceEEEEECCCCce
Confidence 355555554 24799999998 7766554321 1112222233336666666664322 356899999988775
Q ss_pred EeeecCCCCCCCCcccEEEEEcCCE-EEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee-cCE-
Q 006334 116 MRPECRGAPPSPRESHTATLVGDDK-MVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI-ANR- 192 (650)
Q Consensus 116 ~~l~~~~~~P~~R~~hs~~~~~~~~-Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~-~~~- 192 (650)
..+... .. ........+++ |++.++.+ . ...+|.+|..+.....+. ... .....+... ++.
T Consensus 123 ~~~~~~----~~--~~~~~~spdg~~l~~~~~~~---~--~~~l~~~~~~~~~~~~~~---~~~--~~~~~~~~s~dg~~ 186 (297)
T 2ojh_A 123 RLMTKN----LP--SYWHGWSPDGKSFTYCGIRD---Q--VFDIYSMDIDSGVETRLT---HGE--GRNDGPDYSPDGRW 186 (297)
T ss_dssp EECCSS----SS--EEEEEECTTSSEEEEEEEET---T--EEEEEEEETTTCCEEECC---CSS--SCEEEEEECTTSSE
T ss_pred EEeecC----CC--ccceEECCCCCEEEEEECCC---C--ceEEEEEECCCCcceEcc---cCC--CccccceECCCCCE
Confidence 554211 11 22333334555 44444432 1 136777777776665443 111 111122222 444
Q ss_pred EEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEE-ECCEEEEEeccCCCc------ccCeEEEEECCC
Q 006334 193 LFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAIN-IGTKVYIIGGVGDKH------YYNDIWILNVST 265 (650)
Q Consensus 193 Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~-~~~~IyI~GG~~~~~------~~~dv~~yD~~t 265 (650)
|++.+..++ ...+|.++........+.. .. .....+.. .+++.+++++..... ....+++||+.+
T Consensus 187 l~~~~~~~~---~~~i~~~~~~~~~~~~~~~---~~--~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~ 258 (297)
T 2ojh_A 187 IYFNSSRTG---QMQIWRVRVDGSSVERITD---SA--YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDG 258 (297)
T ss_dssp EEEEECTTS---SCEEEEEETTSSCEEECCC---CS--EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTS
T ss_pred EEEEecCCC---CccEEEECCCCCCcEEEec---CC--cccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCC
Confidence 444433232 3578888887777766541 11 11112222 245555555443211 235699999998
Q ss_pred CcEEEee
Q 006334 266 CSWSQLD 272 (650)
Q Consensus 266 ~~W~~l~ 272 (650)
.+...+.
T Consensus 259 ~~~~~~~ 265 (297)
T 2ojh_A 259 GNVETLF 265 (297)
T ss_dssp CSCEEEE
T ss_pred CCceeee
Confidence 8766554
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.2 Score=57.95 Aligned_cols=211 Identities=8% Similarity=0.021 Sum_probs=109.9
Q ss_pred eEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccE
Q 006334 54 DVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW-GHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHT 132 (650)
Q Consensus 54 dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~-~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs 132 (650)
-+++||+.+..+.........+. ..-.+++.. ++.||| |.. ...+++||+.+++++.+... ......-.+
T Consensus 384 Gl~~~~~~~~~~~~~~~~~~~~~-~~v~~i~~d~~g~lWi-gt~-----~~Gl~~~~~~~~~~~~~~~~--~~~~~~v~~ 454 (781)
T 3v9f_A 384 GINVFENGKRVAIYNKENRELLS-NSVLCSLKDSEGNLWF-GTY-----LGNISYYNTRLKKFQIIELE--KNELLDVRV 454 (781)
T ss_dssp CEEEEETTEEEEECC-----CCC-SBEEEEEECTTSCEEE-EET-----TEEEEEECSSSCEEEECCST--TTCCCCEEE
T ss_pred cEEEEECCCCeEEEccCCCCCCC-cceEEEEECCCCCEEE-Eec-----cCCEEEEcCCCCcEEEeccC--CCCCCeEEE
Confidence 37777877666654421101111 111223332 577887 322 14689999999998876321 111122233
Q ss_pred EEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCC-cceeeee-cCEEEEEeccCCCCccCeEEE
Q 006334 133 ATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRD-SHSSNVI-ANRLFVYGGDCGDQYHGDIDM 210 (650)
Q Consensus 133 ~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~-~hs~v~~-~~~Iyv~GG~~~~~~~n~v~~ 210 (650)
++...++.|+|-. . +-+++||+.+++|.............. -.+++.. ++.|++..- .+.+++
T Consensus 455 i~~d~~g~lwigt-~--------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~------~~Gl~~ 519 (781)
T 3v9f_A 455 FYEDKNKKIWIGT-H--------AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTF------GGGVGI 519 (781)
T ss_dssp EEECTTSEEEEEE-T--------TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEES------SSCEEE
T ss_pred EEECCCCCEEEEE-C--------CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEc------CCCEEE
Confidence 3333457777732 1 248899999988876542111111111 1122211 466776431 135899
Q ss_pred EECCCCcEEEeeecCCCCCcccceEEEE-ECCEEEEEeccCCCcccCeE-EEEECCCCcEEEeecCCCCCCCcceeEEEE
Q 006334 211 LDMNSLTWSRLAIIGSSPGVRAGHAAIN-IGTKVYIIGGVGDKHYYNDI-WILNVSTCSWSQLDTCGQQPQGRFSHAAVV 288 (650)
Q Consensus 211 yd~~t~~W~~i~~~g~~P~~R~~~s~v~-~~~~IyI~GG~~~~~~~~dv-~~yD~~t~~W~~l~~~~~~p~~R~~hsav~ 288 (650)
||+.+.+|..+.....++.... .+++. .++.|++... .-+ ++||+.++++..+.....++.... .+++.
T Consensus 520 ~~~~~~~~~~~~~~~~l~~~~i-~~i~~d~~g~lWi~T~-------~Glv~~~d~~~~~~~~~~~~~gl~~~~i-~~i~~ 590 (781)
T 3v9f_A 520 YTPDMQLVRKFNQYEGFCSNTI-NQIYRSSKGQMWLATG-------EGLVCFPSARNFDYQVFQRKEGLPNTHI-RAISE 590 (781)
T ss_dssp ECTTCCEEEEECTTTTCSCSCE-EEEEECTTSCEEEEET-------TEEEEESCTTTCCCEEECGGGTCSCCCC-CEEEE
T ss_pred EeCCCCeEEEccCCCCCCCCee-EEEEECCCCCEEEEEC-------CCceEEECCCCCcEEEccccCCCCCceE-EEEEE
Confidence 9999999988763222222221 22222 2457777531 346 899999998888764322343333 23333
Q ss_pred E-CCeEEEEc
Q 006334 289 T-GSDIVIYG 297 (650)
Q Consensus 289 ~-~~~lyV~G 297 (650)
. ++.|++.+
T Consensus 591 d~~g~lW~~t 600 (781)
T 3v9f_A 591 DKNGNIWAST 600 (781)
T ss_dssp CSSSCEEEEC
T ss_pred CCCCCEEEEc
Confidence 3 46677764
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.66 Score=52.65 Aligned_cols=215 Identities=12% Similarity=0.051 Sum_probs=109.8
Q ss_pred CCEEEEEccC-CCCcccceEEEEECCCCcEEEeecCCCCC-C--------------CC------cceEEEEECCEEEEEc
Q 006334 37 HGAVYIFGGC-CGGLHFGDVLMLNLDTMVWSTLATTGQGP-G--------------PR------DSHSAILWGHKMIVFG 94 (650)
Q Consensus 37 ~~~IyvfGG~-~~~~~~~dv~~yD~~t~sW~~l~~~g~~P-~--------------pR------~~hsa~~~~~~lyVfG 94 (650)
++..+++++. ++......++++|..+++...+....... . .| ....+..-+++.++++
T Consensus 47 dG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~ 126 (741)
T 2ecf_A 47 DGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRLLFP 126 (741)
T ss_dssp TSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSSEEEEE
T ss_pred CCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCEEEEE
Confidence 4565666654 43333458999999998887664321100 0 00 1122223366666666
Q ss_pred ccCCCcCcCeEEEEECCCC---cEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeec
Q 006334 95 GTNGYKKVNDLHILDLESK---EWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASP 171 (650)
Q Consensus 95 G~~~~~~~ndv~~yD~~t~---~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i 171 (650)
.. ..++++|+.+. ....+.. ............+++.++++.. +.++++|+.++....+
T Consensus 127 ~~------~~i~~~d~~~~~~~~~~~l~~-----~~~~~~~~~~SPDG~~la~~~~--------~~i~~~d~~~g~~~~~ 187 (741)
T 2ecf_A 127 LG------GELYLYDLKQEGKAAVRQLTH-----GEGFATDAKLSPKGGFVSFIRG--------RNLWVIDLASGRQMQL 187 (741)
T ss_dssp ET------TEEEEEESSSCSTTSCCBCCC-----SSSCEEEEEECTTSSEEEEEET--------TEEEEEETTTTEEEEC
T ss_pred eC------CcEEEEECCCCCcceEEEccc-----CCcccccccCCCCCCEEEEEeC--------CcEEEEecCCCCEEEe
Confidence 53 78999999887 5444311 1122233444456776666542 2699999988877655
Q ss_pred cccCCCCC--CC---------Ccceeeee--cCEEEEEeccCCCC----------------------------ccCeEEE
Q 006334 172 AVKGDIPV--PR---------DSHSSNVI--ANRLFVYGGDCGDQ----------------------------YHGDIDM 210 (650)
Q Consensus 172 ~~~~~lP~--~R---------~~hs~v~~--~~~Iyv~GG~~~~~----------------------------~~n~v~~ 210 (650)
...+.... .. .....+.+ +++.++++..+... ....++.
T Consensus 188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~ 267 (741)
T 2ecf_A 188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGV 267 (741)
T ss_dssp CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEE
T ss_pred ccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEE
Confidence 42211000 00 00111222 44444444322210 1227888
Q ss_pred EECCC-CcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCcEEEee
Q 006334 211 LDMNS-LTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLD 272 (650)
Q Consensus 211 yd~~t-~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~ 272 (650)
+|+.+ .+-..+... ............ -+++.++++..+......+++.+|+.+.+...+.
T Consensus 268 ~d~~~~~~~~~~~~~-~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~ 328 (741)
T 2ecf_A 268 ISPAEQAQTQWIDLG-KEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLA 328 (741)
T ss_dssp ECSSTTCCCEEECCC-SCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEE
T ss_pred EECCCCCceEEecCC-CCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEE
Confidence 89887 765554311 001111122223 4444444444333334568999999998877664
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=95.65 E-value=1.6 Score=43.45 Aligned_cols=198 Identities=10% Similarity=0.080 Sum_probs=90.7
Q ss_pred CEEEEEccCCCCcccceEEEEECC-CCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCcCcCeEEEEECC--CC
Q 006334 38 GAVYIFGGCCGGLHFGDVLMLNLD-TMVWSTLATTGQGPGPRDSHSAILW-GHKMIVFGGTNGYKKVNDLHILDLE--SK 113 (650)
Q Consensus 38 ~~IyvfGG~~~~~~~~dv~~yD~~-t~sW~~l~~~g~~P~pR~~hsa~~~-~~~lyVfGG~~~~~~~ndv~~yD~~--t~ 113 (650)
..+|+.++. .+.+++||.. +.++..+..... ...-..+++. +++.+++++... ..+.+|++. +.
T Consensus 5 ~~l~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~spdg~~l~~~~~~~----~~v~~~~~~~~~~ 72 (343)
T 1ri6_A 5 QTVYIASPE-----SQQIHVWNLNHEGALTLTQVVDV---PGQVQPMVVSPDKRYLYVGVRPE----FRVLAYRIAPDDG 72 (343)
T ss_dssp EEEEEEEGG-----GTEEEEEEECTTSCEEEEEEEEC---SSCCCCEEECTTSSEEEEEETTT----TEEEEEEECTTTC
T ss_pred EEEEEeCCC-----CCeEEEEEECCCCcEEEeeeEec---CCCCceEEECCCCCEEEEeecCC----CeEEEEEecCCCC
Confidence 456665442 3467888774 455554433211 1112223332 454333444322 467777766 67
Q ss_pred cEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCC-ceeeccccCCCCCCCCcceeeee--c
Q 006334 114 EWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTM-RWASPAVKGDIPVPRDSHSSNVI--A 190 (650)
Q Consensus 114 ~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~-~Wt~i~~~~~lP~~R~~hs~v~~--~ 190 (650)
+++.+..... ...-..++...+++.+++++..+ +.+.+||+... ....+.. .+....-+.++.. +
T Consensus 73 ~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~~------~~i~~~d~~~~~~~~~~~~---~~~~~~~~~~~~s~dg 140 (343)
T 1ri6_A 73 ALTFAAESAL---PGSLTHISTDHQGQFVFVGSYNA------GNVSVTRLEDGLPVGVVDV---VEGLDGCHSANISPDN 140 (343)
T ss_dssp CEEEEEEEEC---SSCCSEEEECTTSSEEEEEETTT------TEEEEEEEETTEEEEEEEE---ECCCTTBCCCEECTTS
T ss_pred ceeecccccc---CCCCcEEEEcCCCCEEEEEecCC------CeEEEEECCCCcccccccc---ccCCCCceEEEECCCC
Confidence 7765522111 11223444444555444444321 35778887422 1222221 1111112233333 3
Q ss_pred CEEEEEeccCCCCccCeEEEEECCC-CcEEEee--ecCCCCCcccceEEEEE-CC-EEEEEeccCCCcccCeEEEEECC-
Q 006334 191 NRLFVYGGDCGDQYHGDIDMLDMNS-LTWSRLA--IIGSSPGVRAGHAAINI-GT-KVYIIGGVGDKHYYNDIWILNVS- 264 (650)
Q Consensus 191 ~~Iyv~GG~~~~~~~n~v~~yd~~t-~~W~~i~--~~g~~P~~R~~~s~v~~-~~-~IyI~GG~~~~~~~~dv~~yD~~- 264 (650)
+.+|+.+..+ +.+.+||+.+ .++..+. .. ..+....-..++.. ++ .+|+.+.. ...+.+||+.
T Consensus 141 ~~l~~~~~~~-----~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~pdg~~l~~~~~~-----~~~i~~~~~~~ 209 (343)
T 1ri6_A 141 RTLWVPALKQ-----DRICLFTVSDDGHLVAQDPAEV-TTVEGAGPRHMVFHPNEQYAYCVNEL-----NSSVDVWELKD 209 (343)
T ss_dssp SEEEEEEGGG-----TEEEEEEECTTSCEEEEEEEEE-ECSTTCCEEEEEECTTSSEEEEEETT-----TTEEEEEESSC
T ss_pred CEEEEecCCC-----CEEEEEEecCCCceeeeccccc-ccCCCCCcceEEECCCCCEEEEEeCC-----CCEEEEEEecC
Confidence 4577665322 4789999887 6665433 11 11111111122222 34 46666532 2468888884
Q ss_pred -CCcEEE
Q 006334 265 -TCSWSQ 270 (650)
Q Consensus 265 -t~~W~~ 270 (650)
+..+..
T Consensus 210 ~~g~~~~ 216 (343)
T 1ri6_A 210 PHGNIEC 216 (343)
T ss_dssp TTSCCEE
T ss_pred CCCcEEE
Confidence 455543
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=95.65 E-value=1.1 Score=44.93 Aligned_cols=161 Identities=16% Similarity=0.138 Sum_probs=79.9
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CC-EEEEEcccCCCcCcCeEEEEECCCCc
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW-GH-KMIVFGGTNGYKKVNDLHILDLESKE 114 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~-~~-~lyVfGG~~~~~~~ndv~~yD~~t~~ 114 (650)
++.+|+.++. .+.++++|+.+++....-..+. ...-+.+++. ++ .+|+.+.. ...+++||+.+.+
T Consensus 10 ~~~~~v~~~~-----~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~~~s~dg~~~~v~~~~-----~~~i~~~d~~t~~ 76 (349)
T 1jmx_B 10 GHEYMIVTNY-----PNNLHVVDVASDTVYKSCVMPD---KFGPGTAMMAPDNRTAYVLNNH-----YGDIYGIDLDTCK 76 (349)
T ss_dssp TCEEEEEEET-----TTEEEEEETTTTEEEEEEECSS---CCSSCEEEECTTSSEEEEEETT-----TTEEEEEETTTTE
T ss_pred CCEEEEEeCC-----CCeEEEEECCCCcEEEEEecCC---CCCCceeEECCCCCEEEEEeCC-----CCcEEEEeCCCCc
Confidence 5677887764 3579999999887654333211 0012333433 44 57776532 2579999999876
Q ss_pred EEeeecCCCCCC--CCcccEEEEEcCCEEEEEcccc--CCCCcc---cceEEEEecCCCceeeccccCCCCCCCCcceee
Q 006334 115 WMRPECRGAPPS--PRESHTATLVGDDKMVIFGGSG--EGEANY---LNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSN 187 (650)
Q Consensus 115 W~~l~~~~~~P~--~R~~hs~~~~~~~~Lyv~GG~~--~~~~~~---~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v 187 (650)
....-.....+. ...-..+++..+++.+++++.+ .....+ .+.+++||+.+++-..... ....++.-.++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~ 154 (349)
T 1jmx_B 77 NTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVR--TFPMPRQVYLMR 154 (349)
T ss_dssp EEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSE--EEECCSSCCCEE
T ss_pred EEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceee--eccCCCccccee
Confidence 543211111110 1112334444455544444421 000001 2579999988744222110 111122222222
Q ss_pred e-ecCEEEEEeccCCCCccCeEEEEECCCCcEEE
Q 006334 188 V-IANRLFVYGGDCGDQYHGDIDMLDMNSLTWSR 220 (650)
Q Consensus 188 ~-~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~ 220 (650)
. -++++|+.++ ++++||+.+.+...
T Consensus 155 ~s~dg~l~~~~~--------~i~~~d~~~~~~~~ 180 (349)
T 1jmx_B 155 AADDGSLYVAGP--------DIYKMDVKTGKYTV 180 (349)
T ss_dssp ECTTSCEEEESS--------SEEEECTTTCCEEE
T ss_pred ECCCCcEEEccC--------cEEEEeCCCCceec
Confidence 2 2456777432 48888887766443
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.64 E-value=1.3 Score=44.35 Aligned_cols=199 Identities=9% Similarity=0.030 Sum_probs=98.6
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCcCcCeEEEEECCCCcE
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW-GHKMIVFGGTNGYKKVNDLHILDLESKEW 115 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~-~~~lyVfGG~~~~~~~ndv~~yD~~t~~W 115 (650)
++.+++.|+.+ ..+.+||..+......-.. . ...-.++.+. +++.++.|+.+ ..+.+||+.+.+.
T Consensus 43 ~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~-h---~~~v~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~ 108 (369)
T 3zwl_B 43 EGDLLFSCSKD-----SSASVWYSLNGERLGTLDG-H---TGTIWSIDVDCFTKYCVTGSAD-----YSIKLWDVSNGQC 108 (369)
T ss_dssp TSCEEEEEESS-----SCEEEEETTTCCEEEEECC-C---SSCEEEEEECTTSSEEEEEETT-----TEEEEEETTTCCE
T ss_pred CCCEEEEEeCC-----CEEEEEeCCCchhhhhhhh-c---CCcEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCcE
Confidence 45666667643 3688999887764433211 0 1111223332 56677777654 3688999988765
Q ss_pred EeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCce----eeccccC--CCC--CCCCcceee
Q 006334 116 MRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRW----ASPAVKG--DIP--VPRDSHSSN 187 (650)
Q Consensus 116 ~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~W----t~i~~~~--~lP--~~R~~hs~v 187 (650)
...-. ....-..+....++..+++++.+. ......+.+||+.+..- ....... .+. ........+
T Consensus 109 ~~~~~-----~~~~v~~~~~~~~~~~l~~~~~~~--~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (369)
T 3zwl_B 109 VATWK-----SPVPVKRVEFSPCGNYFLAILDNV--MKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVA 181 (369)
T ss_dssp EEEEE-----CSSCEEEEEECTTSSEEEEEECCB--TTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEE
T ss_pred EEEee-----cCCCeEEEEEccCCCEEEEecCCc--cCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEE
Confidence 44311 112233344444566666665421 11224677777754321 1110000 000 000011222
Q ss_pred ee--cCEEEEEeccCCCCccCeEEEEECCC-CcEE-EeeecCCCCCcccceEEEEE-CCEEEEEeccCCCcccCeEEEEE
Q 006334 188 VI--ANRLFVYGGDCGDQYHGDIDMLDMNS-LTWS-RLAIIGSSPGVRAGHAAINI-GTKVYIIGGVGDKHYYNDIWILN 262 (650)
Q Consensus 188 ~~--~~~Iyv~GG~~~~~~~n~v~~yd~~t-~~W~-~i~~~g~~P~~R~~~s~v~~-~~~IyI~GG~~~~~~~~dv~~yD 262 (650)
.+ ++.+++.|+.+ ..+..||+.+ ..-. .+.. .. ..-.+++.. ++.+++.|+.+ ..+.+||
T Consensus 182 ~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~----~~-~~v~~~~~~~~~~~l~~~~~d-----~~i~v~d 246 (369)
T 3zwl_B 182 GWSTKGKYIIAGHKD-----GKISKYDVSNNYEYVDSIDL----HE-KSISDMQFSPDLTYFITSSRD-----TNSFLVD 246 (369)
T ss_dssp EECGGGCEEEEEETT-----SEEEEEETTTTTEEEEEEEC----CS-SCEEEEEECTTSSEEEEEETT-----SEEEEEE
T ss_pred EEcCCCCEEEEEcCC-----CEEEEEECCCCcEeEEEEec----CC-CceeEEEECCCCCEEEEecCC-----ceEEEEE
Confidence 22 45566666654 4789999987 3322 2221 11 111222222 45666666543 3689999
Q ss_pred CCCCcEEEe
Q 006334 263 VSTCSWSQL 271 (650)
Q Consensus 263 ~~t~~W~~l 271 (650)
+.+......
T Consensus 247 ~~~~~~~~~ 255 (369)
T 3zwl_B 247 VSTLQVLKK 255 (369)
T ss_dssp TTTCCEEEE
T ss_pred CCCCceeee
Confidence 988765443
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=95.59 E-value=1.2 Score=44.20 Aligned_cols=245 Identities=10% Similarity=0.051 Sum_probs=118.5
Q ss_pred CCEEEEEccCC--CCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-C-CEEEEEcccCCCcCcCeEEEEECCC
Q 006334 37 HGAVYIFGGCC--GGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW-G-HKMIVFGGTNGYKKVNDLHILDLES 112 (650)
Q Consensus 37 ~~~IyvfGG~~--~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~-~-~~lyVfGG~~~~~~~ndv~~yD~~t 112 (650)
++.||+..... .......+++||+.++++..+...........-+++++. + ++|||.... +.+++||+.
T Consensus 28 ~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~------~~l~~~d~~- 100 (314)
T 1pjx_A 28 NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR------LGLLVVQTD- 100 (314)
T ss_dssp TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT------TEEEEEETT-
T ss_pred CCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECC------CCEEEEeCC-
Confidence 57888871100 011235699999988888765431000001112334433 5 788886542 369999998
Q ss_pred CcEEee-ecCCCCCCCCcccEEEEEcCCEEEEEccccC--------CCCcccceEEEEecCCCceeeccccCCCCCCCCc
Q 006334 113 KEWMRP-ECRGAPPSPRESHTATLVGDDKMVIFGGSGE--------GEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDS 183 (650)
Q Consensus 113 ~~W~~l-~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~--------~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~ 183 (650)
.+...+ ...........-..++...++.+|+...... ........+++||+. .+...+.. ... ..
T Consensus 101 g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~--~~~---~~ 174 (314)
T 1pjx_A 101 GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT--AFQ---FP 174 (314)
T ss_dssp SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE--EES---SE
T ss_pred CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc--CCC---Cc
Confidence 776554 2111111112234455555678887643210 001112568899876 55543321 111 11
Q ss_pred ceeeee-----cC-EEEEEeccCCCCccCeEEEEECC-CCcEEEeeecCCCCCc--ccceEEEEE-CCEEEEEeccCCCc
Q 006334 184 HSSNVI-----AN-RLFVYGGDCGDQYHGDIDMLDMN-SLTWSRLAIIGSSPGV--RAGHAAINI-GTKVYIIGGVGDKH 253 (650)
Q Consensus 184 hs~v~~-----~~-~Iyv~GG~~~~~~~n~v~~yd~~-t~~W~~i~~~g~~P~~--R~~~s~v~~-~~~IyI~GG~~~~~ 253 (650)
..++.. ++ .+|+.... .+.+++||+. +.++.........+.. ..-..++.. ++.||+....
T Consensus 175 ~~i~~~~~~d~dg~~l~v~~~~-----~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~---- 245 (314)
T 1pjx_A 175 NGIAVRHMNDGRPYQLIVAETP-----TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG---- 245 (314)
T ss_dssp EEEEEEECTTSCEEEEEEEETT-----TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET----
T ss_pred ceEEEecccCCCCCEEEEEECC-----CCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcC----
Confidence 223333 23 56766432 2578899875 4444322211111111 111223332 4678877422
Q ss_pred ccCeEEEEECCCCcE-EEeecCCCCCCCcceeEEEEE-CCe-EEEEcCCCCCCCCCCcEEEEecC
Q 006334 254 YYNDIWILNVSTCSW-SQLDTCGQQPQGRFSHAAVVT-GSD-IVIYGGCGEDERPLNELLVLQLG 315 (650)
Q Consensus 254 ~~~dv~~yD~~t~~W-~~l~~~~~~p~~R~~hsav~~-~~~-lyV~GG~~~~~~~~~d~~~l~l~ 315 (650)
...+++||+++.+. ..+. .+. ..-.++++. ++. |||.... .+.++++++.
T Consensus 246 -~~~i~~~d~~~g~~~~~~~----~~~-~~~~~i~~~~dg~~l~v~~~~------~~~l~~~~~~ 298 (314)
T 1pjx_A 246 -SSHIEVFGPDGGQPKMRIR----CPF-EKPSNLHFKPQTKTIFVTEHE------NNAVWKFEWQ 298 (314)
T ss_dssp -TTEEEEECTTCBSCSEEEE----CSS-SCEEEEEECTTSSEEEEEETT------TTEEEEEECS
T ss_pred -CCEEEEEcCCCCcEeEEEe----CCC-CCceeEEECCCCCEEEEEeCC------CCeEEEEeCC
Confidence 24789999985432 2222 121 222233333 445 7766432 1468888875
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.52 E-value=1.8 Score=43.44 Aligned_cols=237 Identities=9% Similarity=0.033 Sum_probs=110.5
Q ss_pred CEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEE-ECCEEEEEcccCCCcCcCeEEEEECCCCc--
Q 006334 38 GAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAIL-WGHKMIVFGGTNGYKKVNDLHILDLESKE-- 114 (650)
Q Consensus 38 ~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~-~~~~lyVfGG~~~~~~~ndv~~yD~~t~~-- 114 (650)
+..++.|+.+ ..+.+||+.+......... ...-.++.+ .++..++.++.+.......+..||+.+..
T Consensus 86 ~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~ 155 (369)
T 3zwl_B 86 TKYCVTGSAD-----YSIKLWDVSNGQCVATWKS-----PVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSAT 155 (369)
T ss_dssp SSEEEEEETT-----TEEEEEETTTCCEEEEEEC-----SSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTT
T ss_pred CCEEEEEeCC-----CeEEEEECCCCcEEEEeec-----CCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccc
Confidence 4455555532 3688899887765444332 111122233 25666666665423333567777765442
Q ss_pred --EEeeecC-----CCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCC-Cceee-ccccCCCCCCCCcce
Q 006334 115 --WMRPECR-----GAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKT-MRWAS-PAVKGDIPVPRDSHS 185 (650)
Q Consensus 115 --W~~l~~~-----~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t-~~Wt~-i~~~~~lP~~R~~hs 185 (650)
+...... ...........+....++.++++|+.+ ..+.+||+.+ ..-.. +. . . ...-.+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-------g~i~i~d~~~~~~~~~~~~---~-~-~~~v~~ 223 (369)
T 3zwl_B 156 HELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKD-------GKISKYDVSNNYEYVDSID---L-H-EKSISD 223 (369)
T ss_dssp CCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETT-------SEEEEEETTTTTEEEEEEE---C-C-SSCEEE
T ss_pred eeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCC-------CEEEEEECCCCcEeEEEEe---c-C-CCceeE
Confidence 2221000 000000122233333456677777653 3588999876 33221 11 1 0 111112
Q ss_pred eeee-cCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCC---------ccc
Q 006334 186 SNVI-ANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDK---------HYY 255 (650)
Q Consensus 186 ~v~~-~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~---------~~~ 255 (650)
+... ++.+++.|+.+ ..+..||+.+.+....-. .. ......+...+++.+++|+..+. ...
T Consensus 224 ~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~~~~~~~---~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 294 (369)
T 3zwl_B 224 MQFSPDLTYFITSSRD-----TNSFLVDVSTLQVLKKYE---TD-CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGK 294 (369)
T ss_dssp EEECTTSSEEEEEETT-----SEEEEEETTTCCEEEEEE---CS-SCEEEEEECSSSSEEEEEECCC-------------
T ss_pred EEECCCCCEEEEecCC-----ceEEEEECCCCceeeeec---CC-CCceeEEecCCCceEEEeecCCCceEEEEecCCCc
Confidence 2222 45666666644 478999998876544331 11 11112222234556666654431 111
Q ss_pred CeEEEEECCCCcEEEeecCCCCCCCcceeEEEEE-CCeEEEEcCCCCCCCCCCcEEEEecC
Q 006334 256 NDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVT-GSDIVIYGGCGEDERPLNELLVLQLG 315 (650)
Q Consensus 256 ~dv~~yD~~t~~W~~l~~~~~~p~~R~~hsav~~-~~~lyV~GG~~~~~~~~~d~~~l~l~ 315 (650)
..+.+||..+.+-...-. ...... .++.+. ++++++.|+.+ ..+.++++.
T Consensus 295 ~~i~~~d~~~~~~~~~~~---~~~~~v-~~~~~s~~~~~l~s~~~d------g~v~iw~~~ 345 (369)
T 3zwl_B 295 FEARFYHKIFEEEIGRVQ---GHFGPL-NTVAISPQGTSYASGGED------GFIRLHHFE 345 (369)
T ss_dssp CEEEEEETTTCCEEEEEE---CCSSCE-EEEEECTTSSEEEEEETT------SEEEEEEEC
T ss_pred ceeEEEecCCCcchhhee---cccCcE-EEEEECCCCCEEEEEcCC------CeEEEEECc
Confidence 268888887765333211 011111 122222 56777777742 245556554
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=95.48 E-value=0.42 Score=54.02 Aligned_cols=195 Identities=12% Similarity=0.001 Sum_probs=102.8
Q ss_pred cceEEEEECCCCcEEEeecCCCCCCCCcceEEEE-ECCEEEEEcccCCCcCcCeEEEEECCCC-cEEeeecCCCCCCCCc
Q 006334 52 FGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAIL-WGHKMIVFGGTNGYKKVNDLHILDLESK-EWMRPECRGAPPSPRE 129 (650)
Q Consensus 52 ~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~-~~~~lyVfGG~~~~~~~ndv~~yD~~t~-~W~~l~~~~~~P~~R~ 129 (650)
...++++|..+.....+... . .....-..+.. -+++.++++..+.......++.+|+.+. .+..+.........-.
T Consensus 234 ~~~l~~~d~~~~~~~~~~~~-~-~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~ 311 (706)
T 2z3z_A 234 HVTVGIYHLATGKTVYLQTG-E-PKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEP 311 (706)
T ss_dssp EEEEEEEETTTTEEEECCCC-S-CTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCC
T ss_pred eeEEEEEECCCCceEeeccC-C-CCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECc
Confidence 35799999998876555322 1 11122222232 3666566666555445568999999988 6665421111000000
Q ss_pred ccEEEEEc--CCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcc-eeeee--cC-EEEEEeccCCCC
Q 006334 130 SHTATLVG--DDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSH-SSNVI--AN-RLFVYGGDCGDQ 203 (650)
Q Consensus 130 ~hs~~~~~--~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~h-s~v~~--~~-~Iyv~GG~~~~~ 203 (650)
........ ++++++.+..+ . ...+|.+|........+. . ..... ..+.+ ++ .||+.+.. ...
T Consensus 312 ~~~~~~sp~~dg~~l~~~~~~-g----~~~l~~~~~~~~~~~~l~---~---~~~~v~~~~~~spdg~~l~~~~~~-~~~ 379 (706)
T 2z3z_A 312 LHPLTFLPGSNNQFIWQSRRD-G----WNHLYLYDTTGRLIRQVT---K---GEWEVTNFAGFDPKGTRLYFESTE-ASP 379 (706)
T ss_dssp CSCCEECTTCSSEEEEEECTT-S----SCEEEEEETTSCEEEECC---C---SSSCEEEEEEECTTSSEEEEEESS-SCT
T ss_pred cCCceeecCCCCEEEEEEccC-C----ccEEEEEECCCCEEEecC---C---CCeEEEeeeEEcCCCCEEEEEecC-CCC
Confidence 12234444 67766665442 1 356888887666666543 1 11111 11222 33 45555443 222
Q ss_pred ccCeEEEEECCCCcEEEeeecCCCCCcccceEEEE-ECCEEEEEeccCCCcccCeEEEEECCCCc
Q 006334 204 YHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAIN-IGTKVYIIGGVGDKHYYNDIWILNVSTCS 267 (650)
Q Consensus 204 ~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~-~~~~IyI~GG~~~~~~~~dv~~yD~~t~~ 267 (650)
....+|.+|+.+.....+.. ... .+.++. -+++.+++...+ .....+++.+|+.+.+
T Consensus 380 ~~~~l~~~d~~~~~~~~l~~-----~~~-~~~~~~spdg~~l~~~~~~-~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 380 LERHFYCIDIKGGKTKDLTP-----ESG-MHRTQLSPDGSAIIDIFQS-PTVPRKVTVTNIGKGS 437 (706)
T ss_dssp TCBEEEEEETTCCCCEESCC-----SSS-EEEEEECTTSSEEEEEEEC-SSCSCEEEEEESSSCE
T ss_pred ceEEEEEEEcCCCCceeccC-----CCc-eEEEEECCCCCEEEEEecC-CCCCcEEEEEECCCCe
Confidence 33589999998877665541 111 222222 345555554332 2334679999998887
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.47 E-value=2.5 Score=42.75 Aligned_cols=226 Identities=10% Similarity=0.076 Sum_probs=110.6
Q ss_pred CEEEEEccCCCCcccceEEEEECCCCcEEEeec-CCCCCCCCcceEEEEE-CCEEEEEcccCCCcCcCeEEEEECCCCcE
Q 006334 38 GAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLAT-TGQGPGPRDSHSAILW-GHKMIVFGGTNGYKKVNDLHILDLESKEW 115 (650)
Q Consensus 38 ~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~-~g~~P~pR~~hsa~~~-~~~lyVfGG~~~~~~~ndv~~yD~~t~~W 115 (650)
+.+++.|+.++ .+.++|..+........ .+. ...-.++.+. ++.+++.|+.++ .+..+|+.+.+-
T Consensus 48 ~~~l~tgs~D~-----~v~vW~~~~~~~~~~~~l~gh---~~~v~~~~~~~~~~~l~s~s~D~-----~i~lWd~~~~~~ 114 (321)
T 3ow8_A 48 SETVVTGSLDD-----LVKVWKWRDERLDLQWSLEGH---QLGVVSVDISHTLPIAASSSLDA-----HIRLWDLENGKQ 114 (321)
T ss_dssp -CEEEEEETTS-----CEEEEEEETTEEEEEEEECCC---SSCEEEEEECSSSSEEEEEETTS-----EEEEEETTTTEE
T ss_pred CCEEEEEcCCC-----CEEEEECCCCCeeeeeeeccC---CCCEEEEEECCCCCEEEEEeCCC-----cEEEEECCCCCE
Confidence 45677777654 35555555544432211 111 1111122222 455667676543 678889887754
Q ss_pred EeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee-cCEEE
Q 006334 116 MRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI-ANRLF 194 (650)
Q Consensus 116 ~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~-~~~Iy 194 (650)
...- . ..+ ....++....++++++.|+.+ ..+.+||..+..-...- . . ....-.+++.. +++++
T Consensus 115 ~~~~-~-~~~--~~~~~~~~spdg~~l~~g~~d-------g~v~i~~~~~~~~~~~~-~-~--~~~~v~~~~~spdg~~l 179 (321)
T 3ow8_A 115 IKSI-D-AGP--VDAWTLAFSPDSQYLATGTHV-------GKVNIFGVESGKKEYSL-D-T--RGKFILSIAYSPDGKYL 179 (321)
T ss_dssp EEEE-E-CCT--TCCCCEEECTTSSEEEEECTT-------SEEEEEETTTCSEEEEE-E-C--SSSCEEEEEECTTSSEE
T ss_pred EEEE-e-CCC--ccEEEEEECCCCCEEEEEcCC-------CcEEEEEcCCCceeEEe-c-C--CCceEEEEEECCCCCEE
Confidence 3321 1 111 112234444567777877763 35778888765432211 0 0 01111122222 46677
Q ss_pred EEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEE-ECCEEEEEeccCCCcccCeEEEEECCCCcEEEeec
Q 006334 195 VYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAIN-IGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLDT 273 (650)
Q Consensus 195 v~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~-~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~~ 273 (650)
+.|+.+ ..+..||+.+.+-...- . .. ... -.+++. .++++++.|+.+ ..+.+||+.+......-.
T Consensus 180 asg~~d-----g~i~iwd~~~~~~~~~~-~-~h-~~~-v~~l~~spd~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~ 245 (321)
T 3ow8_A 180 ASGAID-----GIINIFDIATGKLLHTL-E-GH-AMP-IRSLTFSPDSQLLVTASDD-----GYIKIYDVQHANLAGTLS 245 (321)
T ss_dssp EEEETT-----SCEEEEETTTTEEEEEE-C-CC-SSC-CCEEEECTTSCEEEEECTT-----SCEEEEETTTCCEEEEEC
T ss_pred EEEcCC-----CeEEEEECCCCcEEEEE-c-cc-CCc-eeEEEEcCCCCEEEEEcCC-----CeEEEEECCCcceeEEEc
Confidence 777765 46889999877543221 0 10 111 112222 346777777654 358899998776543211
Q ss_pred CCCCCCCcceeEEEEE-CCeEEEEcCCCCCCCCCCcEEEEecC
Q 006334 274 CGQQPQGRFSHAAVVT-GSDIVIYGGCGEDERPLNELLVLQLG 315 (650)
Q Consensus 274 ~~~~p~~R~~hsav~~-~~~lyV~GG~~~~~~~~~d~~~l~l~ 315 (650)
.....-.++++. ++.+++.|+.+ ..+.++++.
T Consensus 246 ----~h~~~v~~~~~sp~~~~l~s~s~D------~~v~iwd~~ 278 (321)
T 3ow8_A 246 ----GHASWVLNVAFCPDDTHFVSSSSD------KSVKVWDVG 278 (321)
T ss_dssp ----CCSSCEEEEEECTTSSEEEEEETT------SCEEEEETT
T ss_pred ----CCCCceEEEEECCCCCEEEEEeCC------CcEEEEeCC
Confidence 011111122232 56677777743 246666665
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=95.47 E-value=0.89 Score=45.78 Aligned_cols=249 Identities=9% Similarity=0.050 Sum_probs=121.6
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCcCcCeEEEEECCCCcE
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW-GHKMIVFGGTNGYKKVNDLHILDLESKEW 115 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~-~~~lyVfGG~~~~~~~ndv~~yD~~t~~W 115 (650)
++.||+.+... ..+++||+.++.+..+... + ...-++++.. ++++|+....+ ......+++||+.+...
T Consensus 55 ~g~l~~~~~~~-----~~i~~~d~~~~~~~~~~~~---~-~~~~~~i~~~~dg~l~v~~~~~-~~~~~~i~~~d~~~~~~ 124 (333)
T 2dg1_A 55 QGQLFLLDVFE-----GNIFKINPETKEIKRPFVS---H-KANPAAIKIHKDGRLFVCYLGD-FKSTGGIFAATENGDNL 124 (333)
T ss_dssp TSCEEEEETTT-----CEEEEECTTTCCEEEEEEC---S-SSSEEEEEECTTSCEEEEECTT-SSSCCEEEEECTTSCSC
T ss_pred CCCEEEEECCC-----CEEEEEeCCCCcEEEEeeC---C-CCCcceEEECCCCcEEEEeCCC-CCCCceEEEEeCCCCEE
Confidence 46788766532 4799999998888765422 1 1222344443 67888765332 11235799999988876
Q ss_pred EeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee-cC-EE
Q 006334 116 MRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI-AN-RL 193 (650)
Q Consensus 116 ~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~-~~-~I 193 (650)
..+-.. ......-..++...++.+|+...... .......+++||+++.+...+.. ... ....++.. ++ .|
T Consensus 125 ~~~~~~--~~~~~~~~~i~~d~~g~l~v~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~--~~~---~~~~i~~~~dg~~l 196 (333)
T 2dg1_A 125 QDIIED--LSTAYCIDDMVFDSKGGFYFTDFRGY-STNPLGGVYYVSPDFRTVTPIIQ--NIS---VANGIALSTDEKVL 196 (333)
T ss_dssp EEEECS--SSSCCCEEEEEECTTSCEEEEECCCB-TTBCCEEEEEECTTSCCEEEEEE--EES---SEEEEEECTTSSEE
T ss_pred EEEEcc--CccCCcccceEECCCCCEEEEecccc-ccCCCceEEEEeCCCCEEEEeec--CCC---cccceEECCCCCEE
Confidence 533111 11122233444445678887543211 11223578999987766654321 110 11222222 33 57
Q ss_pred EEEeccCCCCccCeEEEEECCC--CcEEEeee--cCCCCCcccceEEEEE-CCEEEEEeccCCCcccCeEEEEECCCCcE
Q 006334 194 FVYGGDCGDQYHGDIDMLDMNS--LTWSRLAI--IGSSPGVRAGHAAINI-GTKVYIIGGVGDKHYYNDIWILNVSTCSW 268 (650)
Q Consensus 194 yv~GG~~~~~~~n~v~~yd~~t--~~W~~i~~--~g~~P~~R~~~s~v~~-~~~IyI~GG~~~~~~~~dv~~yD~~t~~W 268 (650)
|+.... .+.+++||+.+ .....+.. ....+....-..++.. +++||+.... ...+++||++...-
T Consensus 197 ~v~~~~-----~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~-----~~~v~~~d~~g~~~ 266 (333)
T 2dg1_A 197 WVTETT-----ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG-----QGRVLVFNKRGYPI 266 (333)
T ss_dssp EEEEGG-----GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET-----TTEEEEECTTSCEE
T ss_pred EEEeCC-----CCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcC-----CCEEEEECCCCCEE
Confidence 776432 25789999853 23332210 0001111111223332 4577776422 24689999865544
Q ss_pred EEeecCCCCCCCc--ceeEEEEE-C-CeEEEEcCCCCCCCCCCcEEEEecC
Q 006334 269 SQLDTCGQQPQGR--FSHAAVVT-G-SDIVIYGGCGEDERPLNELLVLQLG 315 (650)
Q Consensus 269 ~~l~~~~~~p~~R--~~hsav~~-~-~~lyV~GG~~~~~~~~~d~~~l~l~ 315 (650)
..+.... ...+. .-.++++. + +.||+..... .......++++++.
T Consensus 267 ~~~~~~~-~~~g~~~~~~~~~~~~dg~~L~v~~~~g-~~~~~~~l~~~~~~ 315 (333)
T 2dg1_A 267 GQILIPG-RDEGHMLRSTHPQFIPGTNQLIICSNDI-EMGGGSMLYTVNGF 315 (333)
T ss_dssp EEEECTT-GGGTCSCBCCEEEECTTSCEEEEEEECG-GGTCCEEEEEEECS
T ss_pred EEEEcCC-CccccccCcceEEECCCCCEEEEEeCcc-CCCCCceEEEEecc
Confidence 4443210 00000 12233333 3 3566654321 11123467777765
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.61 Score=54.03 Aligned_cols=212 Identities=9% Similarity=0.059 Sum_probs=108.1
Q ss_pred eEEEEECCCCcEEEeecCCCCCC----CCcceEEEEE-CCE-EEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCC
Q 006334 54 DVLMLNLDTMVWSTLATTGQGPG----PRDSHSAILW-GHK-MIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSP 127 (650)
Q Consensus 54 dv~~yD~~t~sW~~l~~~g~~P~----pR~~hsa~~~-~~~-lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~ 127 (650)
-+.+||+.++.+.........+. ...-.+++.. ++. ||| |.. ...+++||+.+++++.+.........
T Consensus 378 Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWi-gt~-----~~Gl~~~d~~~~~~~~~~~~~~~l~~ 451 (795)
T 4a2l_A 378 GLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYI-GTH-----AGGLSILHRNSGQVENFNQRNSQLVN 451 (795)
T ss_dssp CEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEE-EET-----TTEEEEEETTTCCEEEECTTTSCCSC
T ss_pred CeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEE-EeC-----cCceeEEeCCCCcEEEeecCCCCcCC
Confidence 36777777777766543210000 1112233333 566 776 322 14589999999988876321111111
Q ss_pred CcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccC---CCCCCCCcceeee-ecCEEEEEeccCCCC
Q 006334 128 RESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKG---DIPVPRDSHSSNV-IANRLFVYGGDCGDQ 203 (650)
Q Consensus 128 R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~---~lP~~R~~hs~v~-~~~~Iyv~GG~~~~~ 203 (650)
..-.++....++.|++-. . +-+++||+.+++|+...... .++.. .-.++.. -++.|++...
T Consensus 452 ~~v~~i~~d~~g~lwigt-~--------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~i~~d~~g~lWigt~----- 516 (795)
T 4a2l_A 452 ENVYAILPDGEGNLWLGT-L--------SALVRFNPEQRSFTTIEKEKDGTPVVSK-QITTLFRDSHKRLWIGGE----- 516 (795)
T ss_dssp SCEEEEEECSSSCEEEEE-S--------SCEEEEETTTTEEEECCBCTTCCBCCCC-CEEEEEECTTCCEEEEES-----
T ss_pred CeeEEEEECCCCCEEEEe-c--------CceeEEeCCCCeEEEccccccccccCCc-eEEEEEECCCCCEEEEeC-----
Confidence 122233333356777632 2 23889999999998764221 11111 1111211 1466777532
Q ss_pred ccCeEEEEECCCCcEEEeeecCCCC-CcccceEEEEE--CCEEEEEeccCCCcccCeEEEEECCCCcEEEeecCCCCCCC
Q 006334 204 YHGDIDMLDMNSLTWSRLAIIGSSP-GVRAGHAAINI--GTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLDTCGQQPQG 280 (650)
Q Consensus 204 ~~n~v~~yd~~t~~W~~i~~~g~~P-~~R~~~s~v~~--~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~~~~~~p~~ 280 (650)
+.+++||+.+.++ .+....... .+-....++.. ++.|+|... ..+++||+.+++++.+.....++..
T Consensus 517 --~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-------~Gl~~~d~~~~~~~~~~~~~gl~~~ 586 (795)
T 4a2l_A 517 --EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-------EGFYCFNEKDKQIKRYNTTNGLPNN 586 (795)
T ss_dssp --SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-------SCEEEEETTTTEEEEECGGGTCSCS
T ss_pred --CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-------CCceeECCCCCcEEEeCCCCCCchh
Confidence 3689999988888 443110001 11111222222 357777531 2589999999999887643224433
Q ss_pred cceeEEEEE-CCeEEEEc
Q 006334 281 RFSHAAVVT-GSDIVIYG 297 (650)
Q Consensus 281 R~~hsav~~-~~~lyV~G 297 (650)
.. .+++.. ++.|++.+
T Consensus 587 ~i-~~i~~d~~g~lWi~t 603 (795)
T 4a2l_A 587 VV-YGILEDSFGRLWLST 603 (795)
T ss_dssp CE-EEEEECTTSCEEEEE
T ss_pred he-EEEEECCCCCEEEEc
Confidence 32 233332 46677765
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=95.39 E-value=2.4 Score=41.95 Aligned_cols=239 Identities=11% Similarity=0.058 Sum_probs=121.8
Q ss_pred ceeEEEEEC--CEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCcCcCeE
Q 006334 29 WGHSACYSH--GAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW-GHKMIVFGGTNGYKKVNDL 105 (650)
Q Consensus 29 ~ghs~v~~~--~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~-~~~lyVfGG~~~~~~~ndv 105 (650)
...+.+... +.||+.+.. ...+++||+.+. ...+... . ..-.++++. ++++|+.... ...+
T Consensus 29 ~~eg~~~d~~g~~l~~~~~~-----~~~i~~~~~~~~-~~~~~~~----~-~~~~~l~~~~dg~l~v~~~~-----~~~i 92 (296)
T 3e5z_A 29 WTEGPVYVPARSAVIFSDVR-----QNRTWAWSDDGQ-LSPEMHP----S-HHQNGHCLNKQGHLIACSHG-----LRRL 92 (296)
T ss_dssp SEEEEEEEGGGTEEEEEEGG-----GTEEEEEETTSC-EEEEESS----C-SSEEEEEECTTCCEEEEETT-----TTEE
T ss_pred cccCCeEeCCCCEEEEEeCC-----CCEEEEEECCCC-eEEEECC----C-CCcceeeECCCCcEEEEecC-----CCeE
Confidence 344555542 457877753 247999999988 6655432 1 122344443 6778775421 2569
Q ss_pred EEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEE----ccccC------CCCcccceEEEEecCCCceeeccccC
Q 006334 106 HILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIF----GGSGE------GEANYLNDLHVLDLKTMRWASPAVKG 175 (650)
Q Consensus 106 ~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~----GG~~~------~~~~~~~dv~~yd~~t~~Wt~i~~~~ 175 (650)
++||+.+.+.+.+...........-..+++..++.||+. |.... ........+|+||.. .+...+. .
T Consensus 93 ~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~--~ 169 (296)
T 3e5z_A 93 ERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPI--R 169 (296)
T ss_dssp EEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEE--C
T ss_pred EEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEee--c
Confidence 999998888766521101111111223445557888886 43210 001112478999887 5554432 1
Q ss_pred CCCCCCCcceeeee-cCEEEEEeccCCCCccCeEEEEECC-CCcE-EEeeecCCCCCcccceEEEEECCEEEEEeccCCC
Q 006334 176 DIPVPRDSHSSNVI-ANRLFVYGGDCGDQYHGDIDMLDMN-SLTW-SRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDK 252 (650)
Q Consensus 176 ~lP~~R~~hs~v~~-~~~Iyv~GG~~~~~~~n~v~~yd~~-t~~W-~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~ 252 (650)
.+..+ ..++.. ++++++.... .+.+++||+. +.+. ...... ..........+.--+++||+..
T Consensus 170 ~~~~~---~gi~~s~dg~~lv~~~~-----~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~----- 235 (296)
T 3e5z_A 170 DRVKP---NGLAFLPSGNLLVSDTG-----DNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA----- 235 (296)
T ss_dssp CCSSE---EEEEECTTSCEEEEETT-----TTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE-----
T ss_pred CCCCC---ccEEECCCCCEEEEeCC-----CCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc-----
Confidence 11111 222222 4555544332 2578999986 5555 222211 1111111122222356888875
Q ss_pred cccCeEEEEECCCCcEEEeecCCCCCCCcceeEEEEE--C-CeEEEEcCCCCCCCCCCcEEEEecCC
Q 006334 253 HYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVT--G-SDIVIYGGCGEDERPLNELLVLQLGA 316 (650)
Q Consensus 253 ~~~~dv~~yD~~t~~W~~l~~~~~~p~~R~~hsav~~--~-~~lyV~GG~~~~~~~~~d~~~l~l~~ 316 (650)
...+++||+.......+.. +.. -.++++. + +.|||... +.++++++..
T Consensus 236 --~~~v~~~~~~g~~~~~~~~----~~~--~~~~~f~~~d~~~L~v~t~--------~~l~~~~~~~ 286 (296)
T 3e5z_A 236 --GDGVHVLTPDGDELGRVLT----PQT--TSNLCFGGPEGRTLYMTVS--------TEFWSIETNV 286 (296)
T ss_dssp --TTEEEEECTTSCEEEEEEC----SSC--CCEEEEESTTSCEEEEEET--------TEEEEEECSC
T ss_pred --CCeEEEECCCCCEEEEEEC----CCC--ceeEEEECCCCCEEEEEcC--------CeEEEEEccc
Confidence 2479999998665555543 222 1233332 2 24666532 3678887753
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=95.29 E-value=1.5 Score=44.25 Aligned_cols=196 Identities=11% Similarity=0.107 Sum_probs=92.2
Q ss_pred eEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEE
Q 006334 54 DVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTA 133 (650)
Q Consensus 54 dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~ 133 (650)
.+|.+|..++++..+...... ......+..-+++||+.+... ....++.||+.+.+++.+.... .....-..+
T Consensus 19 ~v~~~d~~tg~~~~~~~~~~~--~~p~~~a~spdg~l~~~~~~~---~~~~v~~~~~~~g~~~~~~~~~--~~~~~p~~~ 91 (347)
T 3hfq_A 19 YQGTLDTTAKTLTNDGLLAAT--QNPTYLALSAKDCLYSVDKED---DEGGIAAWQIDGQTAHKLNTVV--APGTPPAYV 91 (347)
T ss_dssp EEEEEETTTTEEEEEEEEEEC--SCCCCEEECTTCEEEEEEEET---TEEEEEEEEEETTEEEEEEEEE--EESCCCSEE
T ss_pred EEEEEcCCCCeEEEeeeeecc--CCcceEEEccCCeEEEEEecC---CCceEEEEEecCCcEEEeeeee--cCCCCCEEE
Confidence 467778888888765432111 111122223367877765321 1357899999888776653210 011112334
Q ss_pred EEEcCCEEEEEccccCCCCcccceEEEEecC-CCceeecc---ccCCCCCCCC----cceeeee-cCEEEEEeccCCCCc
Q 006334 134 TLVGDDKMVIFGGSGEGEANYLNDLHVLDLK-TMRWASPA---VKGDIPVPRD----SHSSNVI-ANRLFVYGGDCGDQY 204 (650)
Q Consensus 134 ~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~-t~~Wt~i~---~~~~lP~~R~----~hs~v~~-~~~Iyv~GG~~~~~~ 204 (650)
++..+++.+++.+..+ +.+.+||+. +.....+. ..+.-|.+|. -+.++.. ++++|+.+...
T Consensus 92 a~spdg~~l~~~~~~~------~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~---- 161 (347)
T 3hfq_A 92 AVDEARQLVYSANYHK------GTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGS---- 161 (347)
T ss_dssp EEETTTTEEEEEETTT------TEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTT----
T ss_pred EECCCCCEEEEEeCCC------CEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCC----
Confidence 4455555444433311 357777774 33333222 1111221111 1222222 45677664432
Q ss_pred cCeEEEEECC-CCcEEEeeecCCCCCcccceEEEEECC-EEEEEeccCCCcccCeEEEEECC--CCcEEEee
Q 006334 205 HGDIDMLDMN-SLTWSRLAIIGSSPGVRAGHAAINIGT-KVYIIGGVGDKHYYNDIWILNVS--TCSWSQLD 272 (650)
Q Consensus 205 ~n~v~~yd~~-t~~W~~i~~~g~~P~~R~~~s~v~~~~-~IyI~GG~~~~~~~~dv~~yD~~--t~~W~~l~ 272 (650)
+.+++||+. +.+...+......+.....+.+..-++ .+|+.+... +.+.+|++. +.++..+.
T Consensus 162 -~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~-----~~v~v~~~~~~~g~~~~~~ 227 (347)
T 3hfq_A 162 -DKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELS-----SQIASLKYDTQTGAFTQLG 227 (347)
T ss_dssp -TEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT-----TEEEEEEEETTTTEEEEEE
T ss_pred -CEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCC-----CEEEEEEecCCCCceEEee
Confidence 478889987 566655432111111111122222344 477764322 345555544 57766554
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=95.27 E-value=1.8 Score=43.27 Aligned_cols=232 Identities=9% Similarity=-0.033 Sum_probs=114.3
Q ss_pred cceeEEEEE--CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEE-ECCEEEEEcccCCCcCcCe
Q 006334 28 RWGHSACYS--HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAIL-WGHKMIVFGGTNGYKKVND 104 (650)
Q Consensus 28 R~ghs~v~~--~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~-~~~~lyVfGG~~~~~~~nd 104 (650)
..+-..+.. ++.||+..-. .+.+++||+.++........ .+. .+++. .++++|+.. .+.
T Consensus 13 ~~~Egp~w~~~~~~l~~~d~~-----~~~i~~~d~~~~~~~~~~~~-----~~~-~~i~~~~dG~l~v~~-------~~~ 74 (297)
T 3g4e_A 13 RCGESPVWEEVSNSLLFVDIP-----AKKVCRWDSFTKQVQRVTMD-----APV-SSVALRQSGGYVATI-------GTK 74 (297)
T ss_dssp SBEEEEEEETTTTEEEEEETT-----TTEEEEEETTTCCEEEEECS-----SCE-EEEEEBTTSSEEEEE-------TTE
T ss_pred ccccCCeEECCCCEEEEEECC-----CCEEEEEECCCCcEEEEeCC-----Cce-EEEEECCCCCEEEEE-------CCe
Confidence 344455554 3688887653 34799999998876544322 111 23333 356766643 257
Q ss_pred EEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCC-----CcccceEEEEecCCCceeeccccCCCCC
Q 006334 105 LHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGE-----ANYLNDLHVLDLKTMRWASPAVKGDIPV 179 (650)
Q Consensus 105 v~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~-----~~~~~dv~~yd~~t~~Wt~i~~~~~lP~ 179 (650)
+++||+.+.+++.+..............+++..+++||+- ...... ......+|++|... +...+.. .+.
T Consensus 75 l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~-~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~~~--~~~- 149 (297)
T 3g4e_A 75 FCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAG-TMAEETAPAVLERHQGALYSLFPDH-HVKKYFD--QVD- 149 (297)
T ss_dssp EEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEE-EEECCSBTTBCCTTCEEEEEECTTS-CEEEEEE--EES-
T ss_pred EEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEe-cCCcccccccccCCCcEEEEEECCC-CEEEEee--ccc-
Confidence 9999999998876632211111111223444446787763 221110 01234688888753 3332211 111
Q ss_pred CCCcceeeee--cCEEEEEeccCCCCccCeEEEEEC--CCCcEEEeeecCCCCC-cccceEEEE-ECCEEEEEeccCCCc
Q 006334 180 PRDSHSSNVI--ANRLFVYGGDCGDQYHGDIDMLDM--NSLTWSRLAIIGSSPG-VRAGHAAIN-IGTKVYIIGGVGDKH 253 (650)
Q Consensus 180 ~R~~hs~v~~--~~~Iyv~GG~~~~~~~n~v~~yd~--~t~~W~~i~~~g~~P~-~R~~~s~v~-~~~~IyI~GG~~~~~ 253 (650)
.-..++.. ++.+|+.... .+.+++||. .+............+. ...-..++. .++.||+..-.
T Consensus 150 --~pngi~~spdg~~lyv~~~~-----~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~---- 218 (297)
T 3g4e_A 150 --ISNGLDWSLDHKIFYYIDSL-----SYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYN---- 218 (297)
T ss_dssp --BEEEEEECTTSCEEEEEEGG-----GTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEET----
T ss_pred --cccceEEcCCCCEEEEecCC-----CCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcC----
Confidence 11222322 3467777542 257888875 4555432111101111 111123333 34688887421
Q ss_pred ccCeEEEEECCCCcEEEeecCCCCCCCcceeEEEEEC---CeEEEEcC
Q 006334 254 YYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVTG---SDIVIYGG 298 (650)
Q Consensus 254 ~~~dv~~yD~~t~~W~~l~~~~~~p~~R~~hsav~~~---~~lyV~GG 298 (650)
-..|++||+++.+....-. .|..+. .++++.+ +.|||...
T Consensus 219 -~~~v~~~d~~tG~~~~~i~---~p~~~~-t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 219 -GGRVIRLDPVTGKRLQTVK---LPVDKT-TSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp -TTEEEEECTTTCCEEEEEE---CSSSBE-EEEEEESGGGCEEEEEEB
T ss_pred -CCEEEEEcCCCceEEEEEE---CCCCCc-eEEEEeCCCCCEEEEEcC
Confidence 1359999999766543221 232222 2333332 46888754
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=95.25 E-value=1.7 Score=49.55 Aligned_cols=124 Identities=18% Similarity=0.242 Sum_probs=69.6
Q ss_pred EEEEECCEEEEEccCCCCcccceEEEEECCCCc--EEEeecCCCC--C---CCCcceEEEEECCEEEEEcccCCCcCcCe
Q 006334 32 SACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMV--WSTLATTGQG--P---GPRDSHSAILWGHKMIVFGGTNGYKKVND 104 (650)
Q Consensus 32 s~v~~~~~IyvfGG~~~~~~~~dv~~yD~~t~s--W~~l~~~g~~--P---~pR~~hsa~~~~~~lyVfGG~~~~~~~nd 104 (650)
+.++.++.||+... .+.++.+|..+++ |+.-...... + ......+.++.+++||+... ...
T Consensus 72 ~P~v~~g~vyv~~~------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~------dg~ 139 (677)
T 1kb0_A 72 TPVVVDGIMYVSAS------WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW------DGR 139 (677)
T ss_dssp CCEEETTEEEEECG------GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT------TSE
T ss_pred CCEEECCEEEEECC------CCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC------CCE
Confidence 44667999999765 2569999988764 8764322100 0 00122345667889888532 256
Q ss_pred EEEEECCCCc--EEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCC--ceee
Q 006334 105 LHILDLESKE--WMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTM--RWAS 170 (650)
Q Consensus 105 v~~yD~~t~~--W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~--~Wt~ 170 (650)
++.+|..+.+ |+.-.............+.++. ++.+|+..+..+ ......++.||..+. .|+.
T Consensus 140 l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~-~~~v~v~~~~~~--~~~~g~v~a~D~~tG~~~W~~ 206 (677)
T 1kb0_A 140 LIALDAATGKEVWHQNTFEGQKGSLTITGAPRVF-KGKVIIGNGGAE--YGVRGYITAYDAETGERKWRW 206 (677)
T ss_dssp EEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEE-TTEEEECCBCTT--TCCBCEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCCEEeeecCCcCcCcCcccccCcEEE-CCEEEEEecccc--cCCCCEEEEEECCCCcEEEEe
Confidence 9999998874 8763110000001111222333 677776433211 123467999999876 4775
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=95.21 E-value=3.7 Score=43.18 Aligned_cols=231 Identities=12% Similarity=0.032 Sum_probs=113.6
Q ss_pred EECCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEECCCCc
Q 006334 35 YSHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESKE 114 (650)
Q Consensus 35 ~~~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~ 114 (650)
..++.+++.|+.+ ..+.+||..+..-...-. +. ...-.++....+.+++.|+.++ .+..+|+.+.+
T Consensus 129 ~~~~~~l~sgs~d-----g~i~vwd~~~~~~~~~~~-~h---~~~V~~l~~~~~~~l~s~s~dg-----~i~vwd~~~~~ 194 (464)
T 3v7d_B 129 QFEDNYVITGADD-----KMIRVYDSINKKFLLQLS-GH---DGGVWALKYAHGGILVSGSTDR-----TVRVWDIKKGC 194 (464)
T ss_dssp EEETTEEEEEETT-----SCEEEEETTTTEEEEEEC-CC---SSCEEEEEECSTTEEEEEETTS-----CEEEEETTTTE
T ss_pred EECCCEEEEEcCC-----CcEEEEECCCCcEEEEEe-CC---CcCEEEEEEcCCCEEEEEeCCC-----CEEEEECCCCc
Confidence 3445566666643 368899988775333211 11 1112233333333677776643 57888988876
Q ss_pred EEeeecCCCCCCCCcccEEEEE--cCCEEEEEccccCCCCcccceEEEEecCCCceeeccccC-----------------
Q 006334 115 WMRPECRGAPPSPRESHTATLV--GDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKG----------------- 175 (650)
Q Consensus 115 W~~l~~~~~~P~~R~~hs~~~~--~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~----------------- 175 (650)
-...- ..... .-.++... .++.+++.|+.+ ..+.+||+.+..-.......
T Consensus 195 ~~~~~--~~h~~--~v~~l~~~~~~~~~~l~s~s~d-------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (464)
T 3v7d_B 195 CTHVF--EGHNS--TVRCLDIVEYKNIKYIVTGSRD-------NTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV 263 (464)
T ss_dssp EEEEE--CCCSS--CEEEEEEEESSSCEEEEEEETT-------SCEEEEECCCCCCC------CCSSEEESCGGGCTTEE
T ss_pred EEEEE--CCCCC--ccEEEEEecCCCCCEEEEEcCC-------CcEEEeeCCCCcccccccccCCcceEeeccCCCeEEE
Confidence 43321 11111 11222222 356778888763 24777887654322100000
Q ss_pred -CCCCCCCcceeeeecCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEE-ECCEEEEEeccCCCc
Q 006334 176 -DIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAIN-IGTKVYIIGGVGDKH 253 (650)
Q Consensus 176 -~lP~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~-~~~~IyI~GG~~~~~ 253 (650)
.+.........+..++.+++.|+.+ ..+..||+.+.+-...- ...... -.+++. .++..++.|+.+
T Consensus 264 ~~~~~~~~~v~~~~~~~~~l~~~~~d-----~~i~vwd~~~~~~~~~~---~~~~~~-v~~~~~~~~~~~l~sg~~d--- 331 (464)
T 3v7d_B 264 GVLRGHMASVRTVSGHGNIVVSGSYD-----NTLIVWDVAQMKCLYIL---SGHTDR-IYSTIYDHERKRCISASMD--- 331 (464)
T ss_dssp EEECCCSSCEEEEEEETTEEEEEETT-----SCEEEEETTTTEEEEEE---CCCSSC-EEEEEEETTTTEEEEEETT---
T ss_pred EEccCccceEEEEcCCCCEEEEEeCC-----CeEEEEECCCCcEEEEe---cCCCCC-EEEEEEcCCCCEEEEEeCC---
Confidence 0000011111223345666777655 46899998876543322 111111 122222 345666776654
Q ss_pred ccCeEEEEECCCCcEEEeecCCCCCCCcceeEEEEECCeEEEEcCCCCCCCCCCcEEEEecC
Q 006334 254 YYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVTGSDIVIYGGCGEDERPLNELLVLQLG 315 (650)
Q Consensus 254 ~~~dv~~yD~~t~~W~~l~~~~~~p~~R~~hsav~~~~~lyV~GG~~~~~~~~~d~~~l~l~ 315 (650)
..+.+||+.+.+-...-. .....-.++..++..++.|+.+ ..+.++++.
T Consensus 332 --g~i~vwd~~~~~~~~~~~-----~h~~~v~~~~~~~~~l~s~s~d------g~v~vwd~~ 380 (464)
T 3v7d_B 332 --TTIRIWDLENGELMYTLQ-----GHTALVGLLRLSDKFLVSAAAD------GSIRGWDAN 380 (464)
T ss_dssp --SCEEEEETTTTEEEEEEC-----CCSSCEEEEEECSSEEEEEETT------SEEEEEETT
T ss_pred --CcEEEEECCCCcEEEEEe-----CCCCcEEEEEEcCCEEEEEeCC------CcEEEEECC
Confidence 358999998775333211 1112224444567777777743 246666665
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=95.19 E-value=2.9 Score=41.75 Aligned_cols=215 Identities=11% Similarity=0.049 Sum_probs=108.7
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCc--EEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEECCCC-
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMV--WSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESK- 113 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~s--W~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~- 113 (650)
.+.+++.|..+ +.++++|..+++ |+.-... .....+..+..++++|+.+ .+.++.||+..+
T Consensus 4 ~~~~lv~~~~~-----~~v~~~d~~tG~~~w~~~~~~----~~~~~~~~~~pdG~ilvs~-------~~~V~~~d~~G~~ 67 (276)
T 3no2_A 4 PQHLLVGGSGW-----NKIAIINKDTKEIVWEYPLEK----GWECNSVAATKAGEILFSY-------SKGAKMITRDGRE 67 (276)
T ss_dssp CCEEEEECTTC-----SEEEEEETTTTEEEEEEECCT----TCCCCEEEECTTSCEEEEC-------BSEEEEECTTSCE
T ss_pred CCcEEEeeCCC-----CEEEEEECCCCeEEEEeCCCc----cCCCcCeEECCCCCEEEeC-------CCCEEEECCCCCE
Confidence 35677766533 568899987665 6543211 0122333344478888832 256999999332
Q ss_pred cEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCC-ceeeccccCCCCC--CCCcceeeeec
Q 006334 114 EWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTM-RWASPAVKGDIPV--PRDSHSSNVIA 190 (650)
Q Consensus 114 ~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~-~Wt~i~~~~~lP~--~R~~hs~v~~~ 190 (650)
.|+.- . +.....++.....++.+++..... ...++.+|++.. .|+. ........ ..........+
T Consensus 68 ~W~~~---~--~~~~~~~~~~~~~dG~~lv~~~~~------~~~v~~vd~~Gk~l~~~-~~~~~~~~~~~~~~~v~~~~~ 135 (276)
T 3no2_A 68 LWNIA---A--PAGCEMQTARILPDGNALVAWCGH------PSTILEVNMKGEVLSKT-EFETGIERPHAQFRQINKNKK 135 (276)
T ss_dssp EEEEE---C--CTTCEEEEEEECTTSCEEEEEEST------TEEEEEECTTSCEEEEE-EECCSCSSGGGSCSCCEECTT
T ss_pred EEEEc---C--CCCccccccEECCCCCEEEEecCC------CCEEEEEeCCCCEEEEE-eccCCCCcccccccCceECCC
Confidence 37542 1 111233455555677777654321 135777887433 2442 11111111 11112223335
Q ss_pred CEEEEEeccCCCCccCeEEEEECCCC-cEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCc--
Q 006334 191 NRLFVYGGDCGDQYHGDIDMLDMNSL-TWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCS-- 267 (650)
Q Consensus 191 ~~Iyv~GG~~~~~~~n~v~~yd~~t~-~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~-- 267 (650)
+.+++.... ...+.+||++.. .|+.-. +. ....+....++.++|.+..+ ..++.||+.+.+
T Consensus 136 G~~lv~~~~-----~~~v~~~d~~G~~~w~~~~--~~----~~~~~~~~~~g~~~v~~~~~-----~~v~~~d~~tG~~~ 199 (276)
T 3no2_A 136 GNYLVPLFA-----TSEVREIAPNGQLLNSVKL--SG----TPFSSAFLDNGDCLVACGDA-----HCFVQLNLESNRIV 199 (276)
T ss_dssp SCEEEEETT-----TTEEEEECTTSCEEEEEEC--SS----CCCEEEECTTSCEEEECBTT-----SEEEEECTTTCCEE
T ss_pred CCEEEEecC-----CCEEEEECCCCCEEEEEEC--CC----CccceeEcCCCCEEEEeCCC-----CeEEEEeCcCCcEE
Confidence 555554432 257899998732 365432 11 11123333456788776432 369999999654
Q ss_pred EEEeecCCCCCCCcc--eeEEEEE-CCeEEEEc
Q 006334 268 WSQLDTCGQQPQGRF--SHAAVVT-GSDIVIYG 297 (650)
Q Consensus 268 W~~l~~~~~~p~~R~--~hsav~~-~~~lyV~G 297 (650)
|+.-.. ..+..+. -.++... ++.+||..
T Consensus 200 w~~~~~--~~~~~~l~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 200 RRVNAN--DIEGVQLFFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp EEEEGG--GSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred EEecCC--CCCCccccccccceEcCCCCEEEEe
Confidence 665422 1121222 2233333 77888886
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=95.16 E-value=2 Score=43.28 Aligned_cols=203 Identities=9% Similarity=0.036 Sum_probs=96.7
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCcCcCeEEEEECCCCc-
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW-GHKMIVFGGTNGYKKVNDLHILDLESKE- 114 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~-~~~lyVfGG~~~~~~~ndv~~yD~~t~~- 114 (650)
++.+++.|+.+ ..+.+||..+..+........ ....-.++.+. ++++++.|+.++ .+..||..+..
T Consensus 63 ~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~-----~v~i~d~~~~~~ 130 (372)
T 1k8k_C 63 DSNRIVTCGTD-----RNAYVWTLKGRTWKPTLVILR--INRAARCVRWAPNEKKFAVGSGSR-----VISICYFEQEND 130 (372)
T ss_dssp TTTEEEEEETT-----SCEEEEEEETTEEEEEEECCC--CSSCEEEEEECTTSSEEEEEETTS-----SEEEEEEETTTT
T ss_pred CCCEEEEEcCC-----CeEEEEECCCCeeeeeEEeec--CCCceeEEEECCCCCEEEEEeCCC-----EEEEEEecCCCc
Confidence 45566666643 358888888887765533211 11122233332 566777776543 35566655543
Q ss_pred EEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCc---------eeeccccC----CCCCCC
Q 006334 115 WMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMR---------WASPAVKG----DIPVPR 181 (650)
Q Consensus 115 W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~---------Wt~i~~~~----~lP~~R 181 (650)
|...... ..+....-.++....++.+++.|+.+ ..+.+||+.... |..-...+ .+....
T Consensus 131 ~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d-------g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (372)
T 1k8k_C 131 WWVCKHI-KKPIRSTVLSLDWHPNSVLLAAGSCD-------FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSC 202 (372)
T ss_dssp EEEEEEE-CTTCCSCEEEEEECTTSSEEEEEETT-------SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCS
T ss_pred ceeeeee-ecccCCCeeEEEEcCCCCEEEEEcCC-------CCEEEEEcccccccccccccccccccchhhheEecCCCC
Confidence 3322111 11112223344444466777777763 247788854211 11100000 111111
Q ss_pred Ccceeeee--cCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEE
Q 006334 182 DSHSSNVI--ANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIW 259 (650)
Q Consensus 182 ~~hs~v~~--~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~ 259 (650)
..-..+.+ ++.+++.|+.+ +.+..||+.+.+-...-. . ........+...++++++.| .+ ..+.
T Consensus 203 ~~v~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~--~-~~~~v~~~~~~~~~~~l~~~-~d-----~~i~ 268 (372)
T 1k8k_C 203 GWVHGVCFSANGSRVAWVSHD-----STVCLADADKKMAVATLA--S-ETLPLLAVTFITESSLVAAG-HD-----CFPV 268 (372)
T ss_dssp SCEEEEEECSSSSEEEEEETT-----TEEEEEEGGGTTEEEEEE--C-SSCCEEEEEEEETTEEEEEE-TT-----SSCE
T ss_pred CeEEEEEECCCCCEEEEEeCC-----CEEEEEECCCCceeEEEc--c-CCCCeEEEEEecCCCEEEEE-eC-----CeEE
Confidence 11112222 45566666654 478899987765332221 1 11111122223456766655 32 2466
Q ss_pred EEECCC--CcEEEeec
Q 006334 260 ILNVST--CSWSQLDT 273 (650)
Q Consensus 260 ~yD~~t--~~W~~l~~ 273 (650)
+||+.+ +.|..+..
T Consensus 269 i~~~~~~~~~~~~~~~ 284 (372)
T 1k8k_C 269 LFTYDSAAGKLSFGGR 284 (372)
T ss_dssp EEEEETTTTEEEECCC
T ss_pred EEEccCcCceEEEeec
Confidence 777777 88887643
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.15 E-value=3.3 Score=43.78 Aligned_cols=154 Identities=10% Similarity=0.031 Sum_probs=77.8
Q ss_pred CEEEEEccCCCCcccceEEEEECC--CCcEEEe-ecCCCCCCCCcceEEEEE-CCEEEEEcccCCCcCcCeEEEEECCCC
Q 006334 38 GAVYIFGGCCGGLHFGDVLMLNLD--TMVWSTL-ATTGQGPGPRDSHSAILW-GHKMIVFGGTNGYKKVNDLHILDLESK 113 (650)
Q Consensus 38 ~~IyvfGG~~~~~~~~dv~~yD~~--t~sW~~l-~~~g~~P~pR~~hsa~~~-~~~lyVfGG~~~~~~~ndv~~yD~~t~ 113 (650)
..|++.|+.+ ..+.+||.. +...... .... .+..-.++++. +++.+++|+.+ ..++.+|+.+.
T Consensus 115 ~~l~~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~---~~~~v~~~~~sp~~~~l~~~~~~-----g~v~~~~~~~~ 181 (450)
T 2vdu_B 115 SRLIACADSD-----KSLLVFDVDKTSKNVLKLRKRFC---FSKRPNAISIAEDDTTVIIADKF-----GDVYSIDINSI 181 (450)
T ss_dssp SEEEEEEGGG-----TEEEEEEECSSSSSCEEEEEEEE---CSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTSC
T ss_pred CEEEEEECCC-----CeEEEEECcCCCCceeeeeeccc---CCCCceEEEEcCCCCEEEEEeCC-----CcEEEEecCCc
Confidence 3556777753 357788877 5443332 2110 01111233332 56677777542 35788888765
Q ss_pred cEEeeecCCCCC-CCCcccEEEEEcC---CEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee
Q 006334 114 EWMRPECRGAPP-SPRESHTATLVGD---DKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI 189 (650)
Q Consensus 114 ~W~~l~~~~~~P-~~R~~hs~~~~~~---~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~ 189 (650)
..... ...... ....-.++....+ +.+++.|+.+ ..+.+||+.+.........+ ... .-.+++..
T Consensus 182 ~~~~~-~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d-------~~i~vwd~~~~~~~~~~~~~--h~~-~v~~~~~s 250 (450)
T 2vdu_B 182 PEEKF-TQEPILGHVSMLTDVHLIKDSDGHQFIITSDRD-------EHIKISHYPQCFIVDKWLFG--HKH-FVSSICCG 250 (450)
T ss_dssp CCSSC-CCCCSEECSSCEEEEEEEECTTSCEEEEEEETT-------SCEEEEEESCTTCEEEECCC--CSS-CEEEEEEC
T ss_pred ccccc-cceeeecccCceEEEEEcCCCCCCcEEEEEcCC-------CcEEEEECCCCceeeeeecC--CCC-ceEEEEEC
Confidence 43210 000010 1112233444456 7788888763 35888898766543211001 111 11122222
Q ss_pred cCEEEEEeccCCCCccCeEEEEECCCCcEEE
Q 006334 190 ANRLFVYGGDCGDQYHGDIDMLDMNSLTWSR 220 (650)
Q Consensus 190 ~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~ 220 (650)
++.+++.|+.+ ..+.+||+.+.+...
T Consensus 251 d~~~l~s~~~d-----~~v~vwd~~~~~~~~ 276 (450)
T 2vdu_B 251 KDYLLLSAGGD-----DKIFAWDWKTGKNLS 276 (450)
T ss_dssp STTEEEEEESS-----SEEEEEETTTCCEEE
T ss_pred CCCEEEEEeCC-----CeEEEEECCCCcEee
Confidence 66777777754 478999998876443
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.11 E-value=2.3 Score=43.55 Aligned_cols=146 Identities=9% Similarity=0.064 Sum_probs=74.3
Q ss_pred CEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCc
Q 006334 88 HKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMR 167 (650)
Q Consensus 88 ~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~ 167 (650)
+..++.|+.+ ..++.||+.+.+-...- . .....-..+....++.+++.|+.+ ..+.+||+.+..
T Consensus 217 ~~~~~~~~~~-----g~i~~~d~~~~~~~~~~-~---~~~~~i~~~~~~~~~~~l~~~~~d-------~~i~i~d~~~~~ 280 (425)
T 1r5m_A 217 DDKFVIPGPK-----GAIFVYQITEKTPTGKL-I---GHHGPISVLEFNDTNKLLLSASDD-------GTLRIWHGGNGN 280 (425)
T ss_dssp TTEEEEECGG-----GCEEEEETTCSSCSEEE-C---CCSSCEEEEEEETTTTEEEEEETT-------SCEEEECSSSBS
T ss_pred CCEEEEEcCC-----CeEEEEEcCCCceeeee-c---cCCCceEEEEECCCCCEEEEEcCC-------CEEEEEECCCCc
Confidence 3345566543 46889998876432210 0 111223344445566677777753 248888887654
Q ss_pred eeeccccCCCCCCCCcceeeeecCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEE-ECCEEEEE
Q 006334 168 WASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAIN-IGTKVYII 246 (650)
Q Consensus 168 Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~-~~~~IyI~ 246 (650)
....- .. ....-.++....+.+++.|+.+ ..+.+||+.+.+-...-. ... ..-.+++. .++.+++.
T Consensus 281 ~~~~~--~~--~~~~i~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~---~~~-~~i~~~~~s~~~~~l~~ 347 (425)
T 1r5m_A 281 SQNCF--YG--HSQSIVSASWVGDDKVISCSMD-----GSVRLWSLKQNTLLALSI---VDG-VPIFAGRISQDGQKYAV 347 (425)
T ss_dssp CSEEE--CC--CSSCEEEEEEETTTEEEEEETT-----SEEEEEETTTTEEEEEEE---CTT-CCEEEEEECTTSSEEEE
T ss_pred cceEe--cC--CCccEEEEEECCCCEEEEEeCC-----CcEEEEECCCCcEeEecc---cCC-ccEEEEEEcCCCCEEEE
Confidence 32211 01 1111223333333266666654 478999988776433321 111 11122222 24567777
Q ss_pred eccCCCcccCeEEEEECCCCc
Q 006334 247 GGVGDKHYYNDIWILNVSTCS 267 (650)
Q Consensus 247 GG~~~~~~~~dv~~yD~~t~~ 267 (650)
|+.+ ..+.+||+.+..
T Consensus 348 ~~~d-----g~i~i~~~~~~~ 363 (425)
T 1r5m_A 348 AFMD-----GQVNVYDLKKLN 363 (425)
T ss_dssp EETT-----SCEEEEECHHHH
T ss_pred EECC-----CeEEEEECCCCc
Confidence 6643 358888887654
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=95.00 E-value=3.7 Score=41.98 Aligned_cols=240 Identities=13% Similarity=0.123 Sum_probs=120.6
Q ss_pred CeEEeeecCCCCCCCcceeEEEEECCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEE-EECCEEE
Q 006334 13 AMWLYPKVLGFNPPERWGHSACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAI-LWGHKMI 91 (650)
Q Consensus 13 ~~W~~~~~~g~~P~~R~ghs~v~~~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~-~~~~~ly 91 (650)
..|.........+ ...-.++.+..+.+|+.|-. ..+++-+-.-.+|+.+......|. ....++ .-++.+|
T Consensus 66 ~tW~~~~~~~~~~-~~~~~~i~~~~~~~~~~g~~------g~i~~S~DgG~tW~~~~~~~~~~~--~~~~i~~~~~~~~~ 136 (327)
T 2xbg_A 66 QTWEPRTLVLDHS-DYRFNSVSFQGNEGWIVGEP------PIMLHTTDGGQSWSQIPLDPKLPG--SPRLIKALGNGSAE 136 (327)
T ss_dssp SSCEECCCCCSCC-CCEEEEEEEETTEEEEEEET------TEEEEESSTTSSCEECCCCTTCSS--CEEEEEEEETTEEE
T ss_pred CCCeECCCCCCCC-CccEEEEEecCCeEEEEECC------CeEEEECCCCCCceECccccCCCC--CeEEEEEECCCCEE
Confidence 4687654322111 12233445566888887532 246665445678999864321121 123333 3468888
Q ss_pred EEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecC-CCceee
Q 006334 92 VFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLK-TMRWAS 170 (650)
Q Consensus 92 VfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~-t~~Wt~ 170 (650)
+.|.. ..+++-+=.-.+|+.+.. +.....+.++...++.+|++|-. ..+++-+-. -.+|+.
T Consensus 137 ~~~~~------g~v~~S~DgG~tW~~~~~----~~~~~~~~~~~~~~~~~~~~g~~--------G~~~~S~d~gG~tW~~ 198 (327)
T 2xbg_A 137 MITNV------GAIYRTKDSGKNWQALVQ----EAIGVMRNLNRSPSGEYVAVSSR--------GSFYSTWEPGQTAWEP 198 (327)
T ss_dssp EEETT------CCEEEESSTTSSEEEEEC----SCCCCEEEEEECTTSCEEEEETT--------SSEEEEECTTCSSCEE
T ss_pred EEeCC------ccEEEEcCCCCCCEEeec----CCCcceEEEEEcCCCcEEEEECC--------CcEEEEeCCCCCceeE
Confidence 87742 135544334568999742 22233445554456677766532 124444322 578997
Q ss_pred ccccCCCCCCCCcceeeee-cCEEEEEeccCCCCccCeEEEEECC-CCcEEEeeecCCCCCcccceEEEEE-CCEEEEEe
Q 006334 171 PAVKGDIPVPRDSHSSNVI-ANRLFVYGGDCGDQYHGDIDMLDMN-SLTWSRLAIIGSSPGVRAGHAAINI-GTKVYIIG 247 (650)
Q Consensus 171 i~~~~~lP~~R~~hs~v~~-~~~Iyv~GG~~~~~~~n~v~~yd~~-t~~W~~i~~~g~~P~~R~~~s~v~~-~~~IyI~G 247 (650)
+. .+.....+.++.. ++.+|+.+.. ..+++.+.+ ..+|+.+.. +.++.....++++.. ++.+|+.|
T Consensus 199 ~~----~~~~~~~~~~~~~~~g~~~~~~~~------G~~~~s~~D~G~tW~~~~~-~~~~~~~~~~~v~~~~~~~~~~~g 267 (327)
T 2xbg_A 199 HN----RTTSRRLHNMGFTPDGRLWMIVNG------GKIAFSDPDNSENWGELLS-PLRRNSVGFLDLAYRTPNEVWLAG 267 (327)
T ss_dssp EE----CCSSSCEEEEEECTTSCEEEEETT------TEEEEEETTEEEEECCCBC-TTSSCCSCEEEEEESSSSCEEEEE
T ss_pred CC----CCCCCccceeEECCCCCEEEEeCC------ceEEEecCCCCCeeEeccC-CcccCCcceEEEEecCCCEEEEEe
Confidence 64 1223333444432 4678877641 235555433 567988752 112222222333333 46788887
Q ss_pred ccCCCcccCeEEEEECCCCcEEEeecCCCCCCCcceeEEEEE-CCeEEEEcC
Q 006334 248 GVGDKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVT-GSDIVIYGG 298 (650)
Q Consensus 248 G~~~~~~~~dv~~yD~~t~~W~~l~~~~~~p~~R~~hsav~~-~~~lyV~GG 298 (650)
+. ..+++-.-.-.+|+.+......+ .. .+.+++. ++.+++.|.
T Consensus 268 ~~------g~i~~S~DgG~tW~~~~~~~~~~-~~-~~~v~~~~~~~~~~~G~ 311 (327)
T 2xbg_A 268 GA------GALLCSQDGGQTWQQDVDVKKVP-SN-FYKILFFSPDQGFILGQ 311 (327)
T ss_dssp ST------TCEEEESSTTSSCEECGGGTTSS-SC-CCEEEEEETTEEEEECS
T ss_pred CC------CeEEEeCCCCcccEEcCccCCCC-CC-eEEEEEECCCceEEEcC
Confidence 62 23544333457899886421111 22 2344443 455665553
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=95.00 E-value=3.3 Score=46.20 Aligned_cols=123 Identities=15% Similarity=0.229 Sum_probs=68.5
Q ss_pred EEEEECCEEEEEccCCCCcccceEEEEEC-CCC--cEEEeecCCCC--C---CCCcceEEEEECCEEEEEcccCCCcCcC
Q 006334 32 SACYSHGAVYIFGGCCGGLHFGDVLMLNL-DTM--VWSTLATTGQG--P---GPRDSHSAILWGHKMIVFGGTNGYKKVN 103 (650)
Q Consensus 32 s~v~~~~~IyvfGG~~~~~~~~dv~~yD~-~t~--sW~~l~~~g~~--P---~pR~~hsa~~~~~~lyVfGG~~~~~~~n 103 (650)
+.++.++.||+.... ...++.+|. .++ .|+.-...... + ......+.++.+++||+... ..
T Consensus 57 ~P~v~~g~vyv~~~~-----~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~------dg 125 (571)
T 2ad6_A 57 APLVIGDMMYVHSAF-----PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA------NG 125 (571)
T ss_dssp CCEEETTEEEEECST-----TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT------TS
T ss_pred ccEEECCEEEEEeCC-----CCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC------CC
Confidence 456679999997652 246999998 665 48764322100 0 00112345667899988643 24
Q ss_pred eEEEEECCCC--cEEeeecCCCCCCC-CcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCC--ceee
Q 006334 104 DLHILDLESK--EWMRPECRGAPPSP-RESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTM--RWAS 170 (650)
Q Consensus 104 dv~~yD~~t~--~W~~l~~~~~~P~~-R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~--~Wt~ 170 (650)
.++.+|..+. .|+.- . ...+.. ....+-++. ++.+|+-.+..+ ...-..++.||..+. .|+.
T Consensus 126 ~l~alD~~tG~~~W~~~-~-~~~~~~~~~~~~P~v~-~g~v~vg~~~~~--~~~~g~v~a~D~~tG~~~W~~ 192 (571)
T 2ad6_A 126 HLLALDAKTGKINWEVE-V-CDPKVGSTLTQAPFVA-KDTVLMGCSGAE--LGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp EEEEEETTTCCEEEEEE-C-CCGGGTCBCCSCCEEE-TTEEEEECBCGG--GTCCCEEEEEETTTCCEEEEE
T ss_pred EEEEEECCCCCEEEEec-C-CCCCccceeccCCEEE-CCEEEEEecCCc--cCCCCEEEEEECCCCcEEEEE
Confidence 6999999887 48753 1 111100 111222333 678776443211 112356899998765 4764
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=94.96 E-value=2.8 Score=47.77 Aligned_cols=228 Identities=11% Similarity=0.019 Sum_probs=113.7
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEECCCCcEE
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESKEWM 116 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~ 116 (650)
++.+++.|+.+ ..+.+||..++.....-.. . .......+...+++.+++|+.+ ..+.+||..+.+..
T Consensus 24 ~~~~la~~~~~-----g~v~iwd~~~~~~~~~~~~-~--~~~v~~~~~s~~~~~l~~~~~d-----g~i~vw~~~~~~~~ 90 (814)
T 3mkq_A 24 TEPWVLTTLYS-----GRVEIWNYETQVEVRSIQV-T--ETPVRAGKFIARKNWIIVGSDD-----FRIRVFNYNTGEKV 90 (814)
T ss_dssp SSSEEEEEETT-----SEEEEEETTTTEEEEEEEC-C--SSCEEEEEEEGGGTEEEEEETT-----SEEEEEETTTCCEE
T ss_pred CCCEEEEEeCC-----CEEEEEECCCCceEEEEec-C--CCcEEEEEEeCCCCEEEEEeCC-----CeEEEEECCCCcEE
Confidence 35566666632 4688999988765443221 1 1111222222356677777753 46889999888765
Q ss_pred eeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCC-ceeeccccCCCCCCCCcceeeee--cCEE
Q 006334 117 RPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTM-RWASPAVKGDIPVPRDSHSSNVI--ANRL 193 (650)
Q Consensus 117 ~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~-~Wt~i~~~~~lP~~R~~hs~v~~--~~~I 193 (650)
..-. + ....-.++....++..++.|+.+ ..+.+||+.++ .....- . .. ...-.+++.. ++.+
T Consensus 91 ~~~~-~---~~~~v~~~~~s~~~~~l~~~~~d-------g~i~vw~~~~~~~~~~~~-~-~~--~~~v~~~~~~p~~~~~ 155 (814)
T 3mkq_A 91 VDFE-A---HPDYIRSIAVHPTKPYVLSGSDD-------LTVKLWNWENNWALEQTF-E-GH--EHFVMCVAFNPKDPST 155 (814)
T ss_dssp EEEE-C---CSSCEEEEEECSSSSEEEEEETT-------SEEEEEEGGGTSEEEEEE-E-CC--SSCEEEEEEETTEEEE
T ss_pred EEEe-c---CCCCEEEEEEeCCCCEEEEEcCC-------CEEEEEECCCCceEEEEE-c-CC--CCcEEEEEEEcCCCCE
Confidence 4211 1 11122333444456667777653 35788888765 222211 0 11 1111222232 4567
Q ss_pred EEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEE---CCEEEEEeccCCCcccCeEEEEECCCCcEEE
Q 006334 194 FVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINI---GTKVYIIGGVGDKHYYNDIWILNVSTCSWSQ 270 (650)
Q Consensus 194 yv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~---~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~ 270 (650)
++.|+.+ ..+..||+.+..-...... ........++.. ++.+++.|+.+ ..+.+||+.+..-..
T Consensus 156 l~~~~~d-----g~v~vwd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~~ 222 (814)
T 3mkq_A 156 FASGCLD-----RTVKVWSLGQSTPNFTLTT---GQERGVNYVDYYPLPDKPYMITASDD-----LTIKIWDYQTKSCVA 222 (814)
T ss_dssp EEEEETT-----SEEEEEETTCSSCSEEEEC---CCTTCCCEEEECCSTTCCEEEEECTT-----SEEEEEETTTTEEEE
T ss_pred EEEEeCC-----CeEEEEECCCCcceeEEec---CCCCCEEEEEEEECCCCCEEEEEeCC-----CEEEEEECCCCcEEE
Confidence 7777755 4788999865542222111 111111222222 56677777643 368999988765433
Q ss_pred eecCCCCCCCcceeEEEEE-CCeEEEEcCCCCCCCCCCcEEEEecC
Q 006334 271 LDTCGQQPQGRFSHAAVVT-GSDIVIYGGCGEDERPLNELLVLQLG 315 (650)
Q Consensus 271 l~~~~~~p~~R~~hsav~~-~~~lyV~GG~~~~~~~~~d~~~l~l~ 315 (650)
.-. ...... .++++. ++.+++.|+.+ ..+.++++.
T Consensus 223 ~~~---~~~~~v-~~~~~~~~~~~l~~~~~d------g~v~vwd~~ 258 (814)
T 3mkq_A 223 TLE---GHMSNV-SFAVFHPTLPIIISGSED------GTLKIWNSS 258 (814)
T ss_dssp EEE---CCSSCE-EEEEECSSSSEEEEEETT------SCEEEEETT
T ss_pred EEc---CCCCCE-EEEEEcCCCCEEEEEeCC------CeEEEEECC
Confidence 211 011111 122222 45677777642 245666654
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=94.93 E-value=2.9 Score=42.61 Aligned_cols=156 Identities=13% Similarity=0.019 Sum_probs=81.8
Q ss_pred cCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEc-CCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCC
Q 006334 102 VNDLHILDLESKEWMRPECRGAPPSPRESHTATLVG-DDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVP 180 (650)
Q Consensus 102 ~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~-~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~ 180 (650)
...++.+|+.+.+...+.. ............ ++..+++... .........+|.+|+....+..+.. ..+
T Consensus 167 ~~~l~~~d~~~g~~~~~~~-----~~~~~~~~~~sp~dg~~l~~~~~-~~~~~~~~~l~~~d~~~~~~~~l~~----~~~ 236 (396)
T 3c5m_A 167 TCRLIKVDIETGELEVIHQ-----DTAWLGHPIYRPFDDSTVGFCHE-GPHDLVDARMWLVNEDGSNVRKIKE----HAE 236 (396)
T ss_dssp CEEEEEEETTTCCEEEEEE-----ESSCEEEEEEETTEEEEEEEEEC-SCSSSCSCCCEEEETTSCCCEESSC----CCT
T ss_pred cceEEEEECCCCcEEeecc-----CCcccccceECCCCCCEEEEEec-CCCCCCCceEEEEECCCCceeEeec----cCC
Confidence 3579999999988776531 112223333343 3443333222 1112223579999998877766541 111
Q ss_pred CCcc-eeeee-cCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEE-CCEEEEEeccCC------
Q 006334 181 RDSH-SSNVI-ANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINI-GTKVYIIGGVGD------ 251 (650)
Q Consensus 181 R~~h-s~v~~-~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~-~~~IyI~GG~~~------ 251 (650)
.... ..... +++.+++...........++++|+.+.+...+.. .+. .. ..... +++++++++...
T Consensus 237 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~---~~~--~~-~~~s~~dg~~l~~~~~~~p~~~~~ 310 (396)
T 3c5m_A 237 GESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV---MPP--CS-HLMSNFDGSLMVGDGCDAPVDVAD 310 (396)
T ss_dssp TEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE---CCS--EE-EEEECSSSSEEEEEECCC------
T ss_pred CccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee---CCC--CC-CCccCCCCceEEEecCCcceeecc
Confidence 1111 11222 4443334333222222459999999888777653 221 11 23333 666666654321
Q ss_pred -----CcccCeEEEEECCCCcEEEeec
Q 006334 252 -----KHYYNDIWILNVSTCSWSQLDT 273 (650)
Q Consensus 252 -----~~~~~dv~~yD~~t~~W~~l~~ 273 (650)
......+|.+|+.+.....+..
T Consensus 311 ~~~~~~~~~~~i~~~d~~~~~~~~l~~ 337 (396)
T 3c5m_A 311 ADSYNIENDPFLYVLNTKAKSAQKLCK 337 (396)
T ss_dssp ----CCCCCCEEEEEETTTTBCCEEEE
T ss_pred ccccccCCCCcEEEEecccCceEEccC
Confidence 1123679999999887766653
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=94.92 E-value=2.2 Score=48.56 Aligned_cols=260 Identities=10% Similarity=-0.028 Sum_probs=129.4
Q ss_pred ECCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCC-CCC--CcceEEEEECCEEEEEcccCCCcCcCeEEEEECCC
Q 006334 36 SHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQG-PGP--RDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLES 112 (650)
Q Consensus 36 ~~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~-P~p--R~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t 112 (650)
.++++|.+=- ........+|+.+.....|+.+...... ... ........-+++.++|+...+......++++|+.+
T Consensus 82 dG~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 82 KGKRYFYFYN-TGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp ETTEEEEEEE-CSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred ECCEEEEEEE-cCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 3455554422 1223446789988877778766322110 001 11111222366766666443323334899999999
Q ss_pred CcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCC---------CcccceEEEEecCCCceeeccccCCCCCCCCc
Q 006334 113 KEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGE---------ANYLNDLHVLDLKTMRWASPAVKGDIPVPRDS 183 (650)
Q Consensus 113 ~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~---------~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~ 183 (650)
++........ .. ....+...|++.++++...... ......++++++.+..............+...
T Consensus 161 g~~~~~~~~~----~~-~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~ 235 (710)
T 2xdw_A 161 AKELPDVLER----VK-FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWM 235 (710)
T ss_dssp TEEEEEEEEE----EC-SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCE
T ss_pred CCCCcccccC----cc-cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEE
Confidence 9887642111 11 1233444466655555443210 12345699999887764311100111112222
Q ss_pred ceeee-ecCEEEEEeccCCCCccCeEEEEECCC------C--cEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcc
Q 006334 184 HSSNV-IANRLFVYGGDCGDQYHGDIDMLDMNS------L--TWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHY 254 (650)
Q Consensus 184 hs~v~-~~~~Iyv~GG~~~~~~~n~v~~yd~~t------~--~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~ 254 (650)
..... -+++.+++.........++++.+|+.+ . .|..+... .... .......+++||+.+..+ ..
T Consensus 236 ~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~---~~~~-~~~~s~dg~~l~~~s~~~--~~ 309 (710)
T 2xdw_A 236 GGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDN---FEGE-YDYVTNEGTVFTFKTNRH--SP 309 (710)
T ss_dssp EEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECS---SSSC-EEEEEEETTEEEEEECTT--CT
T ss_pred EEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCC---CCcE-EEEEeccCCEEEEEECCC--CC
Confidence 22222 244544444332222357899999876 4 57777621 1111 122233456888886532 23
Q ss_pred cCeEEEEECCCC---cEEEeecCCCCCCCcceeEEEEE-CCeEEEEcCCCCCCCCCCcEEEEec
Q 006334 255 YNDIWILNVSTC---SWSQLDTCGQQPQGRFSHAAVVT-GSDIVIYGGCGEDERPLNELLVLQL 314 (650)
Q Consensus 255 ~~dv~~yD~~t~---~W~~l~~~~~~p~~R~~hsav~~-~~~lyV~GG~~~~~~~~~d~~~l~l 314 (650)
...|+.+|+.+. .|+.+... .. ...-..+... ++.+++....+ ....++++++
T Consensus 310 ~~~l~~~d~~~~~~~~~~~l~~~--~~-~~~~~~~~~~~~~~lv~~~~~~----g~~~l~~~~~ 366 (710)
T 2xdw_A 310 NYRLINIDFTDPEESKWKVLVPE--HE-KDVLEWVACVRSNFLVLCYLHD----VKNTLQLHDL 366 (710)
T ss_dssp TCEEEEEETTSCCGGGCEEEECC--CS-SCEEEEEEEETTTEEEEEEEET----TEEEEEEEET
T ss_pred CCEEEEEeCCCCCcccceeccCC--CC-CCeEEEEEEEcCCEEEEEEEEC----CEEEEEEEEC
Confidence 468999999876 58887532 11 1122233444 55666654321 1235677776
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.82 E-value=0.55 Score=54.15 Aligned_cols=195 Identities=11% Similarity=0.078 Sum_probs=99.9
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEE-EC--CEEEEEcccCCCcCcCeEEEEECCCC
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAIL-WG--HKMIVFGGTNGYKKVNDLHILDLESK 113 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~-~~--~~lyVfGG~~~~~~~ndv~~yD~~t~ 113 (650)
++.+++.||.+ ..+.+||..+.++..+..... ....-.++.+ .+ +.+++.|+.++ .+.++|+.+.
T Consensus 20 dg~~latg~~d-----g~I~vwd~~~~~~~~~~~l~~--h~~~V~~l~~s~~~~~~~l~s~s~Dg-----~I~vwd~~~~ 87 (753)
T 3jro_A 20 YGKRLATCSSD-----KTIKIFEVEGETHKLIDTLTG--HEGPVWRVDWAHPKFGTILASCSYDG-----KVLIWKEENG 87 (753)
T ss_dssp SSCCEEEEETT-----TEEEEEEEETTEEEEEEEECC--CSSCEEEEEECCTTSCSEEEEEETTS-----CEEEEEEETT
T ss_pred CCCeEEEEECC-----CcEEEEecCCCCCccceeccC--CcCceEEEEecCCCCCCEEEEEeCCC-----eEEEEECCCC
Confidence 35666667653 368888887777766644311 0111123333 23 67777787644 5788888888
Q ss_pred cEEeeecCCCCCCCCcccEEEEEcC--CEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee--
Q 006334 114 EWMRPECRGAPPSPRESHTATLVGD--DKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI-- 189 (650)
Q Consensus 114 ~W~~l~~~~~~P~~R~~hs~~~~~~--~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~-- 189 (650)
+|..+...... ...-.++....+ +.+++.|+.+ ..+.+||+.+..-.........+.. -.++...
T Consensus 88 ~~~~~~~~~~h--~~~V~~v~~sp~~~~~~l~sgs~d-------g~I~vwdl~~~~~~~~~~~~~~~~~--v~~l~~~p~ 156 (753)
T 3jro_A 88 RWSQIAVHAVH--SASVNSVQWAPHEYGPLLLVASSD-------GKVSVVEFKENGTTSPIIIDAHAIG--VNSASWAPA 156 (753)
T ss_dssp EEEEEEEECCC--SSCEEEEEECCGGGCSEEEEEETT-------SEEEEEECCSSSCCCCEEEECCSSC--EEEEEECCC
T ss_pred cccccccccCC--CCCeEEEEECCCCCCCEEEEEeCC-------CcEEEEEeecCCCcceeEeecCCCc--eEEEEecCc
Confidence 87665322111 122223333334 6778888763 3588888876522111100011111 1111111
Q ss_pred ------------cCEEEEEeccCCCCccCeEEEEECCCC--cEEEeeecCCCCCcccceEEEE-EC---CEEEEEeccCC
Q 006334 190 ------------ANRLFVYGGDCGDQYHGDIDMLDMNSL--TWSRLAIIGSSPGVRAGHAAIN-IG---TKVYIIGGVGD 251 (650)
Q Consensus 190 ------------~~~Iyv~GG~~~~~~~n~v~~yd~~t~--~W~~i~~~g~~P~~R~~~s~v~-~~---~~IyI~GG~~~ 251 (650)
++.+++.|+.++ .+..||+.+. .+..+...... ...-.+++. .+ +.+++.||.++
T Consensus 157 ~~~~~~~~~~~~d~~~l~sgs~dg-----~I~iwd~~~~~~~~~~~~~~~~h--~~~V~~l~~sp~~~~~~~l~s~s~Dg 229 (753)
T 3jro_A 157 TIEEDGEHNGTKESRKFVTGGADN-----LVKIWKYNSDAQTYVLESTLEGH--SDWVRDVAWSPTVLLRSYLASVSQDR 229 (753)
T ss_dssp C---------CGGGCCEEEEETTS-----CEEEEEEETTTTEEEEEEEECCC--SSCEEEEEECCCCSSSEEEEEEESSS
T ss_pred ccccccccccCCCCCEEEEEECCC-----eEEEEeccCCcccceeeeeecCC--CCcEEEEEeccCCCCCCEEEEEecCC
Confidence 356677777553 5777776543 44444422111 111122222 23 67888887643
Q ss_pred CcccCeEEEEECCCC
Q 006334 252 KHYYNDIWILNVSTC 266 (650)
Q Consensus 252 ~~~~~dv~~yD~~t~ 266 (650)
.+.+||+.+.
T Consensus 230 -----~I~iwd~~~~ 239 (753)
T 3jro_A 230 -----TCIIWTQDNE 239 (753)
T ss_dssp -----CEEEEEESSS
T ss_pred -----EEEEecCCCC
Confidence 5788888765
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=94.81 E-value=4 Score=41.40 Aligned_cols=228 Identities=11% Similarity=0.056 Sum_probs=109.4
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEE-ECCEEEEEcccCCCcCcCeEEEEECCCCc-
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAIL-WGHKMIVFGGTNGYKKVNDLHILDLESKE- 114 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~-~~~~lyVfGG~~~~~~~ndv~~yD~~t~~- 114 (650)
++.+++.|+.+ ..+.++|..+..-....... ...-.++++ .++.+++.||.+ ..+.+||+.+..
T Consensus 66 d~~~l~s~s~D-----g~v~iWd~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~s~~~d-----~~v~iw~~~~~~~ 131 (340)
T 1got_B 66 DSRLLLSASQD-----GKLIIWDSYTTNKVHAIPLR----SSWVMTCAYAPSGNYVACGGLD-----NICSIYNLKTREG 131 (340)
T ss_dssp TSSEEEEEETT-----TEEEEEETTTCCEEEEEECS----SSCEEEEEECTTSSEEEEEETT-----CEEEEEETTTCSB
T ss_pred CCCEEEEEeCC-----CcEEEEECCCCCcceEeecC----CccEEEEEECCCCCEEEEEeCC-----CeEEEEECccCCC
Confidence 35666666654 36888898776543322210 111122222 256777778764 357788877643
Q ss_pred -EEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee-cCE
Q 006334 115 -WMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI-ANR 192 (650)
Q Consensus 115 -W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~-~~~ 192 (650)
.......... ...-..+....++. ++.|+.+ ..+.+||+.+.+-...- .+ . ...-.++... ++.
T Consensus 132 ~~~~~~~~~~h--~~~v~~~~~~~~~~-l~s~s~d-------~~i~~wd~~~~~~~~~~-~~--h-~~~v~~~~~~~~~~ 197 (340)
T 1got_B 132 NVRVSRELAGH--TGYLSCCRFLDDNQ-IVTSSGD-------TTCALWDIETGQQTTTF-TG--H-TGDVMSLSLAPDTR 197 (340)
T ss_dssp SCEEEEEEECC--SSCEEEEEEEETTE-EEEEETT-------SCEEEEETTTTEEEEEE-CC--C-SSCEEEEEECTTSS
T ss_pred cceeEEEecCC--CccEEEEEECCCCc-EEEEECC-------CcEEEEECCCCcEEEEE-cC--C-CCceEEEEECCCCC
Confidence 1111000000 11112222333455 4555542 24788898876543211 00 0 1111122222 466
Q ss_pred EEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEE-ECCEEEEEeccCCCcccCeEEEEECCCCcEEEe
Q 006334 193 LFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAIN-IGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQL 271 (650)
Q Consensus 193 Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~-~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l 271 (650)
+++.|+.+ ..+..||+.+..-...- . . .. ..-.+++. .++.+++.|+.++ .+.+||+.+.+-...
T Consensus 198 ~l~sg~~d-----~~v~~wd~~~~~~~~~~-~-~-h~-~~v~~v~~~p~~~~l~s~s~d~-----~v~iwd~~~~~~~~~ 263 (340)
T 1got_B 198 LFVSGACD-----ASAKLWDVREGMCRQTF-T-G-HE-SDINAICFFPNGNAFATGSDDA-----TCRLFDLRADQELMT 263 (340)
T ss_dssp EEEEEETT-----SCEEEEETTTCSEEEEE-C-C-CS-SCEEEEEECTTSSEEEEEETTS-----CEEEEETTTTEEEEE
T ss_pred EEEEEeCC-----CcEEEEECCCCeeEEEE-c-C-Cc-CCEEEEEEcCCCCEEEEEcCCC-----cEEEEECCCCcEEEE
Confidence 77777765 47888998776533221 0 1 01 11112222 2456777776543 588899887653322
Q ss_pred ecCCCCCCCcceeEEEEE--CCeEEEEcCCCCCCCCCCcEEEEecC
Q 006334 272 DTCGQQPQGRFSHAAVVT--GSDIVIYGGCGEDERPLNELLVLQLG 315 (650)
Q Consensus 272 ~~~~~~p~~R~~hsav~~--~~~lyV~GG~~~~~~~~~d~~~l~l~ 315 (650)
-. .......-.++.+ ++.+++.|+.+ ..+.++++.
T Consensus 264 ~~---~~~~~~~v~~~~~s~~g~~l~~g~~d------~~i~vwd~~ 300 (340)
T 1got_B 264 YS---HDNIICGITSVSFSKSGRLLLAGYDD------FNCNVWDAL 300 (340)
T ss_dssp EC---CTTCCSCEEEEEECTTSSEEEEEETT------SEEEEEETT
T ss_pred Ec---cCCcccceEEEEECCCCCEEEEECCC------CeEEEEEcc
Confidence 11 1111112222222 56677777642 346666654
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=94.74 E-value=0.88 Score=50.91 Aligned_cols=241 Identities=12% Similarity=0.008 Sum_probs=121.9
Q ss_pred cceEEEEECC--C-CcEEEeecCCCCC-CCCcceEEEEECCEEEEEcccCCC-----cCcCeEEEEECCC------CcEE
Q 006334 52 FGDVLMLNLD--T-MVWSTLATTGQGP-GPRDSHSAILWGHKMIVFGGTNGY-----KKVNDLHILDLES------KEWM 116 (650)
Q Consensus 52 ~~dv~~yD~~--t-~sW~~l~~~g~~P-~pR~~hsa~~~~~~lyVfGG~~~~-----~~~ndv~~yD~~t------~~W~ 116 (650)
...+|.+|.. . .....+....... ..+....+..-+++.+++...+.. ....+++.+|+.+ ...+
T Consensus 101 ~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 180 (662)
T 3azo_A 101 DQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR 180 (662)
T ss_dssp TCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE
T ss_pred CCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee
Confidence 3579999987 3 5555554321100 112222333336665555554311 2246899999988 6666
Q ss_pred eeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCc-ccceEEEEecC-CC---ceeeccccCCCCCCCCcceeeee-c
Q 006334 117 RPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEAN-YLNDLHVLDLK-TM---RWASPAVKGDIPVPRDSHSSNVI-A 190 (650)
Q Consensus 117 ~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~-~~~dv~~yd~~-t~---~Wt~i~~~~~lP~~R~~hs~v~~-~ 190 (650)
.+.. .............+++.+++...+..... ...+++++|++ +. ....+... . .......... +
T Consensus 181 ~l~~----~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~---~-~~~~~~~~~spd 252 (662)
T 3azo_A 181 ELSD----DAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGG---P-EEAIAQAEWAPD 252 (662)
T ss_dssp ESSC----SCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEE---T-TBCEEEEEECTT
T ss_pred EEEe----cCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCC---C-CceEcceEECCC
Confidence 5420 11122233344456766655554321111 12579999998 56 33333210 0 1111222222 5
Q ss_pred CEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCC-C--CCccc-ceEEEEE-CCEEEEEeccCCCcccCeEEEEECCC
Q 006334 191 NRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGS-S--PGVRA-GHAAINI-GTKVYIIGGVGDKHYYNDIWILNVST 265 (650)
Q Consensus 191 ~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~-~--P~~R~-~~s~v~~-~~~IyI~GG~~~~~~~~dv~~yD~~t 265 (650)
+++|+.+..++ ...+|++|+.+.+|..+..... . |.-.. ....+.. ++++++.+.. ....+|.+|+.+
T Consensus 253 g~l~~~~~~~~---~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~d~~~ 325 (662)
T 3azo_A 253 GSLIVATDRTG---WWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK----GAAVLGILDPES 325 (662)
T ss_dssp SCEEEEECTTS---SCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS----SSCEEEEEETTT
T ss_pred CeEEEEECCCC---CeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc----CccEEEEEECCC
Confidence 66776665432 2479999998888887753110 0 00000 1123333 5677766543 346899999998
Q ss_pred CcEEEeecCCCCCCCcceeEE-EEECCeEEEEcCCCCCCCCCCcEEEEecC
Q 006334 266 CSWSQLDTCGQQPQGRFSHAA-VVTGSDIVIYGGCGEDERPLNELLVLQLG 315 (650)
Q Consensus 266 ~~W~~l~~~~~~p~~R~~hsa-v~~~~~lyV~GG~~~~~~~~~d~~~l~l~ 315 (650)
.....+.. ..... ... ...++.+++..+... ...++|.+++.
T Consensus 326 ~~~~~l~~----~~~~~-~~~~s~~~~~~~~~~~~~~---~~~~i~~~d~~ 368 (662)
T 3azo_A 326 GELVDAAG----PWTEW-AATLTVSGTRAVGVAASPR---TAYEVVELDTV 368 (662)
T ss_dssp TEEEECCS----SCCEE-EEEEEEETTEEEEEEEETT---EEEEEEEEETT
T ss_pred CcEEEecC----CCCeE-EEEEecCCCEEEEEEcCCC---CCCEEEEEECC
Confidence 88777643 11111 122 334556655543221 23467777764
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=94.68 E-value=1.7 Score=45.85 Aligned_cols=186 Identities=20% Similarity=0.212 Sum_probs=98.8
Q ss_pred EEECCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEec
Q 006334 84 ILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDL 163 (650)
Q Consensus 84 ~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~ 163 (650)
...++..++.|+.++ .+.+||..+.+-...- .+ . . ....++..++.+++.|+.+ ..+.+||+
T Consensus 139 ~~~d~~~l~~g~~dg-----~i~iwd~~~~~~~~~~-~~-h---~-~~v~~l~~~~~~l~sg~~d-------g~i~vwd~ 200 (435)
T 1p22_A 139 LQYDDQKIVSGLRDN-----TIKIWDKNTLECKRIL-TG-H---T-GSVLCLQYDERVIITGSSD-------STVRVWDV 200 (435)
T ss_dssp EECCSSEEEEEESSS-----CEEEEESSSCCEEEEE-CC-C---S-SCEEEEECCSSEEEEEETT-------SCEEEEES
T ss_pred EEECCCEEEEEeCCC-----eEEEEeCCCCeEEEEE-cC-C---C-CcEEEEEECCCEEEEEcCC-------CeEEEEEC
Confidence 344777788887643 6888998877654321 11 1 1 1112222267788888763 35888898
Q ss_pred CCCceeeccccCCCCCCCCcceeeeecCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEE
Q 006334 164 KTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKV 243 (650)
Q Consensus 164 ~t~~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~I 243 (650)
.+.+....- ......-..+..++.+++.|+.+ ..+..||+.+..-..... ..........++..++..
T Consensus 201 ~~~~~~~~~-----~~h~~~v~~l~~~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~ 268 (435)
T 1p22_A 201 NTGEMLNTL-----IHHCEAVLHLRFNNGMMVTCSKD-----RSIAVWDMASPTDITLRR--VLVGHRAAVNVVDFDDKY 268 (435)
T ss_dssp SSCCEEEEE-----CCCCSCEEEEECCTTEEEEEETT-----SCEEEEECSSSSCCEEEE--EECCCSSCEEEEEEETTE
T ss_pred CCCcEEEEE-----cCCCCcEEEEEEcCCEEEEeeCC-----CcEEEEeCCCCCCceeee--EecCCCCcEEEEEeCCCE
Confidence 876543211 11112223334455677777755 478889987654221110 001112223334446666
Q ss_pred EEEeccCCCcccCeEEEEECCCCcEEEeecCCCCCCCcceeEEEEECCeEEEEcCCCCCCCCCCcEEEEecC
Q 006334 244 YIIGGVGDKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVTGSDIVIYGGCGEDERPLNELLVLQLG 315 (650)
Q Consensus 244 yI~GG~~~~~~~~dv~~yD~~t~~W~~l~~~~~~p~~R~~hsav~~~~~lyV~GG~~~~~~~~~d~~~l~l~ 315 (650)
++.|+.+ ..+.+||+.+.+-...-. .....-.++..++.+++.|+.+ ..+.++++.
T Consensus 269 l~s~~~d-----g~i~vwd~~~~~~~~~~~-----~~~~~v~~~~~~~~~l~~g~~d------g~i~iwd~~ 324 (435)
T 1p22_A 269 IVSASGD-----RTIKVWNTSTCEFVRTLN-----GHKRGIACLQYRDRLVVSGSSD------NTIRLWDIE 324 (435)
T ss_dssp EEEEETT-----SEEEEEETTTCCEEEEEE-----CCSSCEEEEEEETTEEEEEETT------SCEEEEETT
T ss_pred EEEEeCC-----CeEEEEECCcCcEEEEEc-----CCCCcEEEEEeCCCEEEEEeCC------CeEEEEECC
Confidence 6666643 468899998875433211 0111223344466777777743 356777765
|
| >1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A* | Back alignment and structure |
|---|
Probab=94.67 E-value=4.5 Score=44.01 Aligned_cols=184 Identities=17% Similarity=0.260 Sum_probs=101.2
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEECCCCc--
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESKE-- 114 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~-- 114 (650)
++.+|+|-| +..|+||..+++.....-.+ . +. --++....+++|+|=| +..|+||..+.+
T Consensus 158 ~~~~yfFkG-------~~yw~yd~~~~~~~~~~w~g-i--~~-iDAA~~~~g~~YfFkG-------~~y~rfd~~~~~v~ 219 (460)
T 1qhu_A 158 DEGILFFQG-------NRKWFWDLTTGTKKERSWPA-V--GN-CTSALRWLGRYYCFQG-------NQFLRFNPVSGEVP 219 (460)
T ss_dssp SSEEEEEET-------TEEEEEETTTTEEEEECCTT-S--CC-CSEEEEETTEEEEEET-------TEEEEECTTTCCCC
T ss_pred CCeEEEEec-------ccEEEEecccceeecccCCC-C--Cc-cchheeeCCceEEEEC-------CEEEEEcCccCccc
Confidence 678899988 46899999887655321111 1 22 2345555799999988 578899876543
Q ss_pred ----------EEeeecCC------------CCC---C-CCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCce
Q 006334 115 ----------WMRPECRG------------APP---S-PRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRW 168 (650)
Q Consensus 115 ----------W~~l~~~~------------~~P---~-~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~W 168 (650)
|..+...+ ..| . .....+++...++++|+|-|. ..|++|.....+
T Consensus 220 ~gyPk~is~~w~~c~~~g~~~~~~~st~~~~~p~~C~p~~~~DAi~~~~~G~tYFFKg~---------~yWR~~~~~~~~ 290 (460)
T 1qhu_A 220 PGYPLDVRDYFLSCPGRGHRSSHRNSTQHGHESTRCDPDLVLSAMVSDNHGATYVFSGS---------HYWRLDTNRDGW 290 (460)
T ss_dssp TTCCEEHHHHTSCCTTCCSCC-------CCCTTTTTCTTCCCCEEEECTTCCEEEEETT---------EEEECTTGGGCC
T ss_pred CCCCcchhhcccCCCCCCCccccccCCccccccccccCCCCcCEEEecCCCeEEEEeCC---------EEEEEecCCCCc
Confidence 21110000 000 0 112233333246899998774 367776544333
Q ss_pred eecccc---CCCCCCCCcceeeeecCEEEEEeccCCCCccCeEEEEECCCCcEEEeee--------cCCCCCc----ccc
Q 006334 169 ASPAVK---GDIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAI--------IGSSPGV----RAG 233 (650)
Q Consensus 169 t~i~~~---~~lP~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~--------~g~~P~~----R~~ 233 (650)
....+. ..+|.. --++...++++|+|=| +.+|+|+..+. .+.+.. .| +|.. +-.
T Consensus 291 ~p~~Is~~WpglP~~--IDAAf~~~~~~yfFkG-------~~yw~f~~~~g-~~~~~GyPK~I~~~lG-lp~~~~~~~ID 359 (460)
T 1qhu_A 291 HSWPIAHQWPQGPST--VDAAFSWEDKLYLIQD-------TKVYVFLTKGG-YTLVNGYPKRLEKELG-SPPVISLEAVD 359 (460)
T ss_dssp CCEEGGGTCTTSCSS--CSEEEEETTEEEEEET-------TEEEEEECSBS-CEECTTCCEEHHHHHC-CCSSCCCSCCC
T ss_pred CccchhhhccCCCCC--CcEEEEECCeEEEEeC-------CEEEEEeCCCC-ceecCCCCeEHHHhcc-CCCccccCccc
Confidence 211111 133432 2344445789999977 67899986531 222210 11 2222 122
Q ss_pred eEEEE-ECCEEEEEeccCCCcccCeEEEEECCC
Q 006334 234 HAAIN-IGTKVYIIGGVGDKHYYNDIWILNVST 265 (650)
Q Consensus 234 ~s~v~-~~~~IyI~GG~~~~~~~~dv~~yD~~t 265 (650)
++... ..+++|+|-| +..|+||...
T Consensus 360 AA~~~~~~~ktyfFkG-------~~ywryd~~~ 385 (460)
T 1qhu_A 360 AAFVCPGSSRLHIMAG-------RRLWWLDLKS 385 (460)
T ss_dssp EEECCTTCCEEEEEET-------TEEEEEEGGG
T ss_pred EEEEeCCCCEEEEEEC-------CEEEEEECCC
Confidence 22222 2469999977 4789999874
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=94.63 E-value=5 Score=42.04 Aligned_cols=147 Identities=7% Similarity=0.068 Sum_probs=76.5
Q ss_pred CEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCcCcCeEEEEECCCCcEE
Q 006334 38 GAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW-GHKMIVFGGTNGYKKVNDLHILDLESKEWM 116 (650)
Q Consensus 38 ~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~-~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~ 116 (650)
+.+++.|+.++ .+.+||..+......-.. . ...-.++++. ++++++.|+.++ .+.++|+.+.+-.
T Consensus 120 ~~~l~s~s~Dg-----~i~vwd~~~~~~~~~l~~-h---~~~V~~v~~~~~~~~l~sgs~D~-----~i~iwd~~~~~~~ 185 (410)
T 1vyh_C 120 FSVMVSASEDA-----TIKVWDYETGDFERTLKG-H---TDSVQDISFDHSGKLLASCSADM-----TIKLWDFQGFECI 185 (410)
T ss_dssp SSEEEEEESSS-----CEEEEETTTCCCCEEECC-C---SSCEEEEEECTTSSEEEEEETTS-----CCCEEETTSSCEE
T ss_pred CCEEEEEeCCC-----eEEEEECCCCcEEEEEec-c---CCcEEEEEEcCCCCEEEEEeCCC-----eEEEEeCCCCcee
Confidence 56777777543 588899887754332111 1 1111222332 567788887654 3566777665543
Q ss_pred eeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee--cCEEE
Q 006334 117 RPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI--ANRLF 194 (650)
Q Consensus 117 ~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~--~~~Iy 194 (650)
.. . ......-.++....++..++.|+.+ ..+.+||+.+..-...- .+ .......+.. ++.++
T Consensus 186 ~~--~--~~h~~~V~~v~~~p~~~~l~s~s~D-------~~i~~wd~~~~~~~~~~-~~----h~~~v~~~~~~~~g~~l 249 (410)
T 1vyh_C 186 RT--M--HGHDHNVSSVSIMPNGDHIVSASRD-------KTIKMWEVQTGYCVKTF-TG----HREWVRMVRPNQDGTLI 249 (410)
T ss_dssp EC--C--CCCSSCEEEEEECSSSSEEEEEETT-------SEEEEEETTTCCEEEEE-EC----CSSCEEEEEECTTSSEE
T ss_pred EE--E--cCCCCCEEEEEEeCCCCEEEEEeCC-------CeEEEEECCCCcEEEEE-eC----CCccEEEEEECCCCCEE
Confidence 31 0 0111112233333456677777763 35888898776533211 01 1111112222 46677
Q ss_pred EEeccCCCCccCeEEEEECCCCcEE
Q 006334 195 VYGGDCGDQYHGDIDMLDMNSLTWS 219 (650)
Q Consensus 195 v~GG~~~~~~~n~v~~yd~~t~~W~ 219 (650)
+.|+.+ ..+..||+.+....
T Consensus 250 ~s~s~D-----~~v~vwd~~~~~~~ 269 (410)
T 1vyh_C 250 ASCSND-----QTVRVWVVATKECK 269 (410)
T ss_dssp EEEETT-----SCEEEEETTTCCEE
T ss_pred EEEcCC-----CeEEEEECCCCcee
Confidence 777765 36788888776543
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=94.58 E-value=3.7 Score=46.82 Aligned_cols=124 Identities=15% Similarity=0.163 Sum_probs=68.7
Q ss_pred EEEECCEEEEEcccCCCcCcCeEEEEECCCCc--EEeeecCCCCCCC-----CcccEEEEEcCCEEEEEccccCCCCccc
Q 006334 83 AILWGHKMIVFGGTNGYKKVNDLHILDLESKE--WMRPECRGAPPSP-----RESHTATLVGDDKMVIFGGSGEGEANYL 155 (650)
Q Consensus 83 a~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~--W~~l~~~~~~P~~-----R~~hs~~~~~~~~Lyv~GG~~~~~~~~~ 155 (650)
-++.++.||+... .+.++.+|..+.+ |+.-........+ ....+.++ .+++||+....
T Consensus 73 P~v~~g~vyv~~~------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~-~~~~v~v~~~d-------- 137 (677)
T 1kb0_A 73 PVVVDGIMYVSAS------WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL-WKGKVYVGAWD-------- 137 (677)
T ss_dssp CEEETTEEEEECG------GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE-ETTEEEEECTT--------
T ss_pred CEEECCEEEEECC------CCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE-ECCEEEEEcCC--------
Confidence 3567999999765 2579999998874 8763110000000 01122333 46788775321
Q ss_pred ceEEEEecCCC--ceeeccccCCCCC-CCCcceeeeecCEEEEEeccCCCCccCeEEEEECCCCc--EEEee
Q 006334 156 NDLHVLDLKTM--RWASPAVKGDIPV-PRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLT--WSRLA 222 (650)
Q Consensus 156 ~dv~~yd~~t~--~Wt~i~~~~~lP~-~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~--W~~i~ 222 (650)
..++.+|..++ .|+.-... .... .....+.++.++.+|+..+.........++.||..+.+ |+.-.
T Consensus 138 g~l~alD~~tG~~~W~~~~~~-~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 208 (677)
T 1kb0_A 138 GRLIALDAATGKEVWHQNTFE-GQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFS 208 (677)
T ss_dssp SEEEEEETTTCCEEEEEETTT-TCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred CEEEEEECCCCCEEeeecCCc-CcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEecc
Confidence 35899998766 48752210 1110 11222344567888775442222234679999998765 87644
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.58 E-value=1.1 Score=45.97 Aligned_cols=184 Identities=7% Similarity=0.054 Sum_probs=92.6
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEE-ECCEEEEEcccCCCcCcCeEEEEECCCCcE
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAIL-WGHKMIVFGGTNGYKKVNDLHILDLESKEW 115 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~-~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W 115 (650)
++.+++.||.++ .+.+||..++.|........ .....-.++++ .++++++.|+.++ .+.++|..+..+
T Consensus 27 ~g~~las~~~D~-----~i~iw~~~~~~~~~~~~~~~-~h~~~v~~~~~sp~g~~l~s~s~D~-----~v~iw~~~~~~~ 95 (345)
T 3fm0_A 27 AGTLLASCGGDR-----RIRIWGTEGDSWICKSVLSE-GHQRTVRKVAWSPCGNYLASASFDA-----TTCIWKKNQDDF 95 (345)
T ss_dssp TSSCEEEEETTS-----CEEEEEEETTEEEEEEEECS-SCSSCEEEEEECTTSSEEEEEETTS-----CEEEEEECCC-E
T ss_pred CCCEEEEEcCCC-----eEEEEEcCCCcceeeeeecc-ccCCcEEEEEECCCCCEEEEEECCC-----cEEEEEccCCCe
Confidence 467777777543 57788888887764322111 01111222333 2577777787654 456677777666
Q ss_pred EeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCc-eeeccccCCCCCCCCcceeeee--cCE
Q 006334 116 MRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMR-WASPAVKGDIPVPRDSHSSNVI--ANR 192 (650)
Q Consensus 116 ~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~-Wt~i~~~~~lP~~R~~hs~v~~--~~~ 192 (650)
..+..-... ...-.++....++.+++.|+.+ ..+.+||+.+.. +..+.. +.........+.+ ++.
T Consensus 96 ~~~~~~~~h--~~~v~~v~~sp~~~~l~s~s~D-------~~v~iwd~~~~~~~~~~~~---~~~h~~~v~~~~~~p~~~ 163 (345)
T 3fm0_A 96 ECVTTLEGH--ENEVKSVAWAPSGNLLATCSRD-------KSVWVWEVDEEDEYECVSV---LNSHTQDVKHVVWHPSQE 163 (345)
T ss_dssp EEEEEECCC--SSCEEEEEECTTSSEEEEEETT-------SCEEEEEECTTSCEEEEEE---ECCCCSCEEEEEECSSSS
T ss_pred EEEEEccCC--CCCceEEEEeCCCCEEEEEECC-------CeEEEEECCCCCCeEEEEE---ecCcCCCeEEEEECCCCC
Confidence 543211111 1112233334467788888764 247788876542 322221 1111111122222 456
Q ss_pred EEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEE--CCEEEEEeccCC
Q 006334 193 LFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINI--GTKVYIIGGVGD 251 (650)
Q Consensus 193 Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~--~~~IyI~GG~~~ 251 (650)
+++.|+.+ ..+..||..+..|..+.....- ......+.+ ++++++.|+.++
T Consensus 164 ~l~s~s~d-----~~i~~w~~~~~~~~~~~~~~~h---~~~v~~l~~sp~g~~l~s~s~D~ 216 (345)
T 3fm0_A 164 LLASASYD-----DTVKLYREEEDDWVCCATLEGH---ESTVWSLAFDPSGQRLASCSDDR 216 (345)
T ss_dssp CEEEEETT-----SCEEEEEEETTEEEEEEEECCC---SSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEeCC-----CcEEEEEecCCCEEEEEEecCC---CCceEEEEECCCCCEEEEEeCCC
Confidence 77777755 3678888888888755432111 111222222 456777776543
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=94.49 E-value=0.2 Score=51.42 Aligned_cols=152 Identities=11% Similarity=0.083 Sum_probs=71.8
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCcCcCeEEEEECCCCc-
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW-GHKMIVFGGTNGYKKVNDLHILDLESKE- 114 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~-~~~lyVfGG~~~~~~~ndv~~yD~~t~~- 114 (650)
++.+++.|+.+ ..+.+||..++.|..+.....- ...-.++.+. ++++++.|+.++ .+.+||+.+..
T Consensus 22 ~g~~l~~~~~d-----~~i~iw~~~~~~~~~~~~~~~h--~~~v~~~~~s~~~~~l~s~s~d~-----~v~vwd~~~~~~ 89 (377)
T 3dwl_C 22 QRTEFVTTTAT-----NQVELYEQDGNGWKHARTFSDH--DKIVTCVDWAPKSNRIVTCSQDR-----NAYVYEKRPDGT 89 (377)
T ss_dssp SSSEEECCCSS-----SCBCEEEEETTEEEECCCBCCC--SSCEEEEEECTTTCCEEEEETTS-----SEEEC------C
T ss_pred CCCEEEEecCC-----CEEEEEEccCCceEEEEEEecC--CceEEEEEEeCCCCEEEEEeCCC-----eEEEEEcCCCCc
Confidence 45666667653 3577888888878776544210 1111222332 567777777543 57788887766
Q ss_pred EEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCc-eeeccccCCCCCCCCcceeeee-cCE
Q 006334 115 WMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMR-WASPAVKGDIPVPRDSHSSNVI-ANR 192 (650)
Q Consensus 115 W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~-Wt~i~~~~~lP~~R~~hs~v~~-~~~ 192 (650)
|........ ....-..+....++.+++.|+.+ ..+.+||+.+.. |..+..... +....-.++... ++.
T Consensus 90 ~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d-------~~i~iwd~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~ 159 (377)
T 3dwl_C 90 WKQTLVLLR--LNRAATFVRWSPNEDKFAVGSGA-------RVISVCYFEQENDWWVSKHLKR-PLRSTILSLDWHPNNV 159 (377)
T ss_dssp CCCEEECCC--CSSCEEEEECCTTSSCCEEEESS-------SCEEECCC-----CCCCEEECS-SCCSCEEEEEECTTSS
T ss_pred eeeeeEecc--cCCceEEEEECCCCCEEEEEecC-------CeEEEEEECCcccceeeeEeec-ccCCCeEEEEEcCCCC
Confidence 443311111 11222233333456777777763 247788887654 433221111 011111222222 456
Q ss_pred EEEEeccCCCCccCeEEEEECCC
Q 006334 193 LFVYGGDCGDQYHGDIDMLDMNS 215 (650)
Q Consensus 193 Iyv~GG~~~~~~~n~v~~yd~~t 215 (650)
+++.|+.+ ..+..||+.+
T Consensus 160 ~l~~~~~d-----~~i~iwd~~~ 177 (377)
T 3dwl_C 160 LLAAGCAD-----RKAYVLSAYV 177 (377)
T ss_dssp EEEEEESS-----SCEEEEEECC
T ss_pred EEEEEeCC-----CEEEEEEEEe
Confidence 77777765 3677888753
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=94.48 E-value=4.4 Score=40.45 Aligned_cols=235 Identities=10% Similarity=0.044 Sum_probs=118.0
Q ss_pred CEEEEEccCCC-CcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-C-CEEEEEcccCCCcCcCeEEEEECCCCc
Q 006334 38 GAVYIFGGCCG-GLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW-G-HKMIVFGGTNGYKKVNDLHILDLESKE 114 (650)
Q Consensus 38 ~~IyvfGG~~~-~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~-~-~~lyVfGG~~~~~~~ndv~~yD~~t~~ 114 (650)
+.||+...... ....+.++++|+.+.+.......+. + .+.+++. + +.+|+.+..+ +.++.||+.+.+
T Consensus 53 ~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~----~-~~~~~~s~dg~~l~v~~~~~-----~~v~~~d~~~~~ 122 (353)
T 3vgz_A 53 NALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDL----K-PFGATINNTTQTLWFGNTVN-----SAVTAIDAKTGE 122 (353)
T ss_dssp TEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESS----C-CCSEEEETTTTEEEEEETTT-----TEEEEEETTTCC
T ss_pred CEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCC----C-cceEEECCCCCEEEEEecCC-----CEEEEEeCCCCe
Confidence 47777553211 1225679999998876544333221 1 2233333 4 4577766532 479999999876
Q ss_pred EEe-eecCCCC-C---CCCcccEEEEEcC-CEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeee
Q 006334 115 WMR-PECRGAP-P---SPRESHTATLVGD-DKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNV 188 (650)
Q Consensus 115 W~~-l~~~~~~-P---~~R~~hs~~~~~~-~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~ 188 (650)
-.. +...... + .+..-+.+++..+ +.+|+.+... -..+++||+.+.+-...- .. ....-+.++.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~------~~~i~~~d~~~~~~~~~~---~~-~~~~~~~~~~ 192 (353)
T 3vgz_A 123 VKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK------ESVIWVVDGGNIKLKTAI---QN-TGKMSTGLAL 192 (353)
T ss_dssp EEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS------SCEEEEEETTTTEEEEEE---CC-CCTTCCCCEE
T ss_pred eEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCC------CceEEEEcCCCCceEEEe---cC-CCCccceEEE
Confidence 432 2221100 0 0111233444444 4566654221 145999999876543321 10 1111222333
Q ss_pred e--cCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEE--CCEEEEEeccCCCcccCeEEEEECC
Q 006334 189 I--ANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINI--GTKVYIIGGVGDKHYYNDIWILNVS 264 (650)
Q Consensus 189 ~--~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~--~~~IyI~GG~~~~~~~~dv~~yD~~ 264 (650)
. ++.+|+... .+.+++||+.+.+-......+..........++.. ++.+|+... ..+.+++||+.
T Consensus 193 s~dg~~l~~~~~------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-----~~~~v~~~d~~ 261 (353)
T 3vgz_A 193 DSEGKRLYTTNA------DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDS-----KAAEVLVVDTR 261 (353)
T ss_dssp ETTTTEEEEECT------TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEES-----SSSEEEEEETT
T ss_pred CCCCCEEEEEcC------CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeC-----CCCEEEEEECC
Confidence 2 345666543 25788999988764433222111111222223333 346766642 23579999998
Q ss_pred CCcEEEeecCCCCCCCcceeEEEEE-CC-eEEEEcCCCCCCCCCCcEEEEecC
Q 006334 265 TCSWSQLDTCGQQPQGRFSHAAVVT-GS-DIVIYGGCGEDERPLNELLVLQLG 315 (650)
Q Consensus 265 t~~W~~l~~~~~~p~~R~~hsav~~-~~-~lyV~GG~~~~~~~~~d~~~l~l~ 315 (650)
+.+....-.. +.+ ..+++. ++ .+|+.+.. .+.+.++++.
T Consensus 262 ~~~~~~~~~~---~~~---~~~~~s~dg~~l~v~~~~------~~~v~~~d~~ 302 (353)
T 3vgz_A 262 NGNILAKVAA---PES---LAVLFNPARNEAYVTHRQ------AGKVSVIDAK 302 (353)
T ss_dssp TCCEEEEEEC---SSC---CCEEEETTTTEEEEEETT------TTEEEEEETT
T ss_pred CCcEEEEEEc---CCC---ceEEECCCCCEEEEEECC------CCeEEEEECC
Confidence 8876543322 111 123333 44 47776542 2467777765
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=94.36 E-value=5.2 Score=40.77 Aligned_cols=203 Identities=6% Similarity=-0.043 Sum_probs=96.8
Q ss_pred ECCEEEEEccCCCCcccceEEEEECCCCc-------EEEeecCCCCCCCCcceEEEE-EC----C---EEEEEcccCCCc
Q 006334 36 SHGAVYIFGGCCGGLHFGDVLMLNLDTMV-------WSTLATTGQGPGPRDSHSAIL-WG----H---KMIVFGGTNGYK 100 (650)
Q Consensus 36 ~~~~IyvfGG~~~~~~~~dv~~yD~~t~s-------W~~l~~~g~~P~pR~~hsa~~-~~----~---~lyVfGG~~~~~ 100 (650)
....+++.|+.+ ..+.+||..+.. ...+... . ..-.++.+ .+ + .+++.|+.++
T Consensus 24 ~~~~~l~s~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~h---~--~~v~~~~~~~~~~~~g~~~~~l~s~~~dg-- 91 (397)
T 1sq9_A 24 ACNSFTVSCSGD-----GYLKVWDNKLLDNENPKDKSYSHFVH---K--SGLHHVDVLQAIERDAFELCLVATTSFSG-- 91 (397)
T ss_dssp ECSSEEEEEETT-----SEEEEEESBCCTTCCGGGGEEEEECC---T--TCEEEEEEEEEEETTTEEEEEEEEEETTS--
T ss_pred ecCCeEEEEcCC-----CEEEEEECCCcccccCCCcceEEecC---C--CcEEEEEEecccccCCccccEEEEEcCCC--
Confidence 344666667653 368888988765 3333321 1 11122222 34 6 7888887643
Q ss_pred CcCeEEEEECCCCc------EEeeecCCCCCCCCcccEEEEE----cCCEE-EEEccccCCCCcccceEEEEecCC----
Q 006334 101 KVNDLHILDLESKE------WMRPECRGAPPSPRESHTATLV----GDDKM-VIFGGSGEGEANYLNDLHVLDLKT---- 165 (650)
Q Consensus 101 ~~ndv~~yD~~t~~------W~~l~~~~~~P~~R~~hs~~~~----~~~~L-yv~GG~~~~~~~~~~dv~~yd~~t---- 165 (650)
.+.+||+.+.. +..+...........-.++... .++.+ ++.|+.+ ..+.+||+.+
T Consensus 92 ---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d-------g~i~iwd~~~~~~~ 161 (397)
T 1sq9_A 92 ---DLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVK-------GTTYIWKFHPFADE 161 (397)
T ss_dssp ---CEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETT-------SCEEEEEEESSSSH
T ss_pred ---CEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCC-------CcEEEEeCCccccc
Confidence 57777777665 6655211000001223344444 45666 7777763 3477788765
Q ss_pred --CceeeccccCCC--------CCCCCcceeeee-cCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCC-CC-Cccc
Q 006334 166 --MRWASPAVKGDI--------PVPRDSHSSNVI-ANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGS-SP-GVRA 232 (650)
Q Consensus 166 --~~Wt~i~~~~~l--------P~~R~~hs~v~~-~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~-~P-~~R~ 232 (650)
..-........+ .....-.++... ++ +++.|+.+ ..+..||+.+.+....-.... .. ....
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~h~~~~~~ 235 (397)
T 1sq9_A 162 SNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNN-----GTVQISELSTLRPLYNFESQHSMINNSNS 235 (397)
T ss_dssp HHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTT-----SEEEEEETTTTEEEEEEECCC---CCCCC
T ss_pred cccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCC-----CcEEEEECCCCceeEEEeccccccccCCc
Confidence 221110000000 011112223333 35 66666654 478999998775443221100 00 0111
Q ss_pred ceEEEE-ECCEEEEEeccCCCcccCeEEEEECCCCcE
Q 006334 233 GHAAIN-IGTKVYIIGGVGDKHYYNDIWILNVSTCSW 268 (650)
Q Consensus 233 ~~s~v~-~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W 268 (650)
-.+++. .++++++.|+.++ ....+.+||+.+.+-
T Consensus 236 i~~i~~~~~~~~l~~~~~d~--~~g~i~i~d~~~~~~ 270 (397)
T 1sq9_A 236 IRSVKFSPQGSLLAIAHDSN--SFGCITLYETEFGER 270 (397)
T ss_dssp EEEEEECSSTTEEEEEEEET--TEEEEEEEETTTCCE
T ss_pred cceEEECCCCCEEEEEecCC--CCceEEEEECCCCcc
Confidence 122222 2456777766431 114699999987653
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=94.34 E-value=3.8 Score=46.52 Aligned_cols=211 Identities=11% Similarity=0.092 Sum_probs=112.5
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCC--------cCcCeEEEE
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGY--------KKVNDLHIL 108 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~--------~~~ndv~~y 108 (650)
+++.+.|+-...+....+++++|+.++........ ..+....+.. +++-++++-.... .....+|++
T Consensus 139 Dg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~----~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~ 213 (693)
T 3iuj_A 139 DGRILAYSLSLAGSDWREIHLMDVESKQPLETPLK----DVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFH 213 (693)
T ss_dssp TSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEE----EEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEE
T ss_pred CCCEEEEEEecCCCceEEEEEEECCCCCCCccccC----CceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEE
Confidence 35555553322233345899999999987654321 1122333344 6655555544322 345679999
Q ss_pred ECCCCcE--EeeecCCCCC-CCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCC--ceeeccccCCCCCCCCc
Q 006334 109 DLESKEW--MRPECRGAPP-SPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTM--RWASPAVKGDIPVPRDS 183 (650)
Q Consensus 109 D~~t~~W--~~l~~~~~~P-~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~--~Wt~i~~~~~lP~~R~~ 183 (650)
++.+..= ..+ ..... .+..........+++.+++.-... ...+++|++|+.+. .|..+. . +.. ..
T Consensus 214 ~lgt~~~~~~~v--~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~---~~~~~i~~~d~~~~~~~~~~l~---~-~~~-~~ 283 (693)
T 3iuj_A 214 RLGTAQEDDRLV--FGAIPAQHHRYVGATVTEDDRFLLISAANS---TSGNRLYVKDLSQENAPLLTVQ---G-DLD-AD 283 (693)
T ss_dssp ETTSCGGGCEEE--ESCSGGGCCSEEEEEECTTSCEEEEEEESS---SSCCEEEEEETTSTTCCCEEEE---C-SSS-SC
T ss_pred ECCCCcccceEE--EecCCCCCeEEEEEEEcCCCCEEEEEEccC---CCCcEEEEEECCCCCCceEEEe---C-CCC-ce
Confidence 9887642 122 11111 122233344444565444432211 12368999998765 677654 1 111 11
Q ss_pred ce-eeeecCEEEEEeccCCCCccCeEEEEECCCC---cEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEE
Q 006334 184 HS-SNVIANRLFVYGGDCGDQYHGDIDMLDMNSL---TWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIW 259 (650)
Q Consensus 184 hs-~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~---~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~ 259 (650)
.. ....++.+|+....+. ....++.+|+.+. .|+.+... ..... .....++.|++..-.+ ....++
T Consensus 284 ~~~~~~~g~~l~~~t~~~~--~~~~l~~~d~~~~~~~~~~~l~~~---~~~~~--~~s~~g~~lv~~~~~~---g~~~l~ 353 (693)
T 3iuj_A 284 VSLVDNKGSTLYLLTNRDA--PNRRLVTVDAANPGPAHWRDLIPE---RQQVL--TVHSGSGYLFAEYMVD---ATARVE 353 (693)
T ss_dssp EEEEEEETTEEEEEECTTC--TTCEEEEEETTSCCGGGCEEEECC---CSSCE--EEEEETTEEEEEEEET---TEEEEE
T ss_pred EEEEeccCCEEEEEECCCC--CCCEEEEEeCCCCCccccEEEecC---CCCEE--EEEEECCEEEEEEEEC---CeeEEE
Confidence 12 2334678888876432 3468999998763 48876521 11111 4445566766553322 235789
Q ss_pred EEECCCCcEEEee
Q 006334 260 ILNVSTCSWSQLD 272 (650)
Q Consensus 260 ~yD~~t~~W~~l~ 272 (650)
++|+.......+.
T Consensus 354 ~~d~~g~~~~~l~ 366 (693)
T 3iuj_A 354 QFDYEGKRVREVA 366 (693)
T ss_dssp EECTTSCEEEEEC
T ss_pred EEECCCCeeEEee
Confidence 9999877666554
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=94.30 E-value=4.2 Score=39.50 Aligned_cols=186 Identities=11% Similarity=-0.009 Sum_probs=97.4
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCcCcCeEEEEECCCCcE
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW-GHKMIVFGGTNGYKKVNDLHILDLESKEW 115 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~-~~~lyVfGG~~~~~~~ndv~~yD~~t~~W 115 (650)
++.||+.... .+.+++||+ +.......... ....-..+++. ++++|+..- ..+.+++||+ +.+.
T Consensus 109 ~g~l~v~~~~-----~~~i~~~d~-~g~~~~~~~~~---~~~~~~~i~~~~~g~l~v~~~-----~~~~i~~~~~-~g~~ 173 (299)
T 2z2n_A 109 NGDIWFTEMN-----GNRIGRITD-DGKIREYELPN---KGSYPSFITLGSDNALWFTEN-----QNNAIGRITE-SGDI 173 (299)
T ss_dssp TSCEEEEETT-----TTEEEEECT-TCCEEEEECSS---TTCCEEEEEECTTSCEEEEET-----TTTEEEEECT-TCCE
T ss_pred CCCEEEEecC-----CceEEEECC-CCCEEEecCCC---CCCCCceEEEcCCCCEEEEeC-----CCCEEEEEcC-CCcE
Confidence 4677775432 246888998 66665543221 11222344443 568887542 1257899999 7777
Q ss_pred EeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCc-ceeeee-cCEE
Q 006334 116 MRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDS-HSSNVI-ANRL 193 (650)
Q Consensus 116 ~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~-hs~v~~-~~~I 193 (650)
..+..... ...-..++...++.||+.... .+.+++||+ ++.+..+. ++..... ..++.. ++.+
T Consensus 174 ~~~~~~~~---~~~~~~i~~~~~g~l~v~~~~-------~~~i~~~~~-~g~~~~~~----~~~~~~~~~~i~~~~~g~l 238 (299)
T 2z2n_A 174 TEFKIPTP---ASGPVGITKGNDDALWFVEII-------GNKIGRITT-SGEITEFK----IPTPNARPHAITAGAGIDL 238 (299)
T ss_dssp EEEECSST---TCCEEEEEECTTSSEEEEETT-------TTEEEEECT-TCCEEEEE----CSSTTCCEEEEEECSTTCE
T ss_pred EEeeCCCC---CCcceeEEECCCCCEEEEccC-------CceEEEECC-CCcEEEEE----CCCCCCCceeEEECCCCCE
Confidence 65422111 111223444445778876432 236889998 77666532 1111111 222222 4678
Q ss_pred EEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCc
Q 006334 194 FVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCS 267 (650)
Q Consensus 194 yv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~ 267 (650)
|+.... .+.+.+||+ +.....+..... ...-.+++..++.||+... .+.+.+||+++++
T Consensus 239 ~v~~~~-----~~~i~~~d~-~g~~~~~~~~~~---~~~~~~i~~~~g~l~v~~~------~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 239 WFTEWG-----ANKIGRLTS-NNIIEEYPIQIK---SAEPHGICFDGETIWFAME------CDKIGKLTLIKDN 297 (299)
T ss_dssp EEEETT-----TTEEEEEET-TTEEEEEECSSS---SCCEEEEEECSSCEEEEET------TTEEEEEEEC---
T ss_pred EEeccC-----CceEEEECC-CCceEEEeCCCC---CCccceEEecCCCEEEEec------CCcEEEEEcCccc
Confidence 876422 257999998 455555432111 1122333335567887742 2578899887653
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.26 E-value=1.6 Score=44.13 Aligned_cols=200 Identities=10% Similarity=0.147 Sum_probs=100.2
Q ss_pred CEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-C--CEEEEEcccCCCcCcCeEEEEECCCCc
Q 006334 38 GAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW-G--HKMIVFGGTNGYKKVNDLHILDLESKE 114 (650)
Q Consensus 38 ~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~-~--~~lyVfGG~~~~~~~ndv~~yD~~t~~ 114 (650)
+.+++.|+.+ ..+.+||..++.|..+..... ....-.++.+. + +.+++.|+.++ .+.+||+.+..
T Consensus 69 ~~~l~s~~~d-----g~v~iwd~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~d~-----~i~v~d~~~~~ 136 (379)
T 3jrp_A 69 GTILASCSYD-----GKVLIWKEENGRWSQIAVHAV--HSASVNSVQWAPHEYGPLLLVASSDG-----KVSVVEFKENG 136 (379)
T ss_dssp CSEEEEEETT-----SCEEEEEEETTEEEEEEEECC--CSSCEEEEEECCGGGCSEEEEEETTS-----EEEEEECCTTS
T ss_pred CCEEEEeccC-----CEEEEEEcCCCceeEeeeecC--CCcceEEEEeCCCCCCCEEEEecCCC-----cEEEEecCCCC
Confidence 5666666653 358889998888876654421 11122233332 3 56777776543 67888887763
Q ss_pred EE-eeecCCCCCCCCcccEEEEEc-------------CCEEEEEccccCCCCcccceEEEEecCCCc--eeeccccCCCC
Q 006334 115 WM-RPECRGAPPSPRESHTATLVG-------------DDKMVIFGGSGEGEANYLNDLHVLDLKTMR--WASPAVKGDIP 178 (650)
Q Consensus 115 W~-~l~~~~~~P~~R~~hs~~~~~-------------~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~--Wt~i~~~~~lP 178 (650)
.. ...... ....-.++.... ++.+++.|+.+ ..+.+||+.+.. |..+. .+.
T Consensus 137 ~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-------g~i~i~d~~~~~~~~~~~~---~~~ 203 (379)
T 3jrp_A 137 TTSPIIIDA---HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD-------NLVKIWKYNSDAQTYVLES---TLE 203 (379)
T ss_dssp CCCEEEEEC---CTTCEEEEEECCCC----------CTTCEEEEEETT-------SCEEEEEEETTTTEEEEEE---EEC
T ss_pred ceeeEEecC---CCCceEEEEEcCccccccccccCCCCCCEEEEEeCC-------CeEEEEEecCCCcceeeEE---EEe
Confidence 21 111110 011112222222 46778888763 247788876543 44322 111
Q ss_pred CCCCc-ceeeee-c---CEEEEEeccCCCCccCeEEEEECCCCc--EEEeeecCCCCCcccceEEEE-ECCEEEEEeccC
Q 006334 179 VPRDS-HSSNVI-A---NRLFVYGGDCGDQYHGDIDMLDMNSLT--WSRLAIIGSSPGVRAGHAAIN-IGTKVYIIGGVG 250 (650)
Q Consensus 179 ~~R~~-hs~v~~-~---~~Iyv~GG~~~~~~~n~v~~yd~~t~~--W~~i~~~g~~P~~R~~~s~v~-~~~~IyI~GG~~ 250 (650)
..... .+++.. + +.+++.|+.++ .+.+||+.+.. +.... .........-.+++. .++++++.|+.+
T Consensus 204 ~h~~~v~~~~~sp~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~d 277 (379)
T 3jrp_A 204 GHSDWVRDVAWSPTVLLRSYLASVSQDR-----TCIIWTQDNEQGPWKKTL-LKEEKFPDVLWRASWSLSGNVLALSGGD 277 (379)
T ss_dssp CCSSCEEEEEECCCCSSSEEEEEEETTS-----CEEEEEESSTTSCCEEEE-SSSSCCSSCEEEEEECSSSCCEEEEESS
T ss_pred cccCcEeEEEECCCCCCCCeEEEEeCCC-----EEEEEeCCCCCccceeee-eccccCCCcEEEEEEcCCCCEEEEecCC
Confidence 11111 122222 3 57778777653 57888877653 22211 101111111122222 345677776653
Q ss_pred CCcccCeEEEEECC-CCcEEEeec
Q 006334 251 DKHYYNDIWILNVS-TCSWSQLDT 273 (650)
Q Consensus 251 ~~~~~~dv~~yD~~-t~~W~~l~~ 273 (650)
..+.+||+. ...|..+..
T Consensus 278 -----g~i~iw~~~~~~~~~~~~~ 296 (379)
T 3jrp_A 278 -----NKVTLWKENLEGKWEPAGE 296 (379)
T ss_dssp -----SSEEEEEEEETTEEEEEEE
T ss_pred -----CcEEEEeCCCCCccccccc
Confidence 347777776 567887754
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=94.22 E-value=2.8 Score=41.90 Aligned_cols=108 Identities=11% Similarity=0.105 Sum_probs=59.4
Q ss_pred CEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEcccCCCcCcCeEEEEECCCCcE
Q 006334 38 GAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW--GHKMIVFGGTNGYKKVNDLHILDLESKEW 115 (650)
Q Consensus 38 ~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~--~~~lyVfGG~~~~~~~ndv~~yD~~t~~W 115 (650)
+.+++.|+.+ ..+.+||..+..-...-.. . ...-.++.+. ++.+++.|+.++ .+.+||+.+.+.
T Consensus 85 ~~~l~~~~~d-----g~i~v~d~~~~~~~~~~~~-~---~~~i~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~ 150 (366)
T 3k26_A 85 HPLLAVAGSR-----GIIRIINPITMQCIKHYVG-H---GNAINELKFHPRDPNLLLSVSKDH-----ALRLWNIQTDTL 150 (366)
T ss_dssp CEEEEEEETT-----CEEEEECTTTCCEEEEEES-C---CSCEEEEEECSSCTTEEEEEETTS-----CEEEEETTTTEE
T ss_pred CCEEEEecCC-----CEEEEEEchhceEeeeecC-C---CCcEEEEEECCCCCCEEEEEeCCC-----eEEEEEeecCeE
Confidence 4677777754 3688899887654332211 1 1112233332 567777777643 588899988765
Q ss_pred EeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCc
Q 006334 116 MRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMR 167 (650)
Q Consensus 116 ~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~ 167 (650)
...-. ........-.++....++..++.|+.+ ..+.+||+.+.+
T Consensus 151 ~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d-------g~i~i~d~~~~~ 194 (366)
T 3k26_A 151 VAIFG-GVEGHRDEVLSADYDLLGEKIMSCGMD-------HSLKLWRINSKR 194 (366)
T ss_dssp EEEEC-STTSCSSCEEEEEECTTSSEEEEEETT-------SCEEEEESCSHH
T ss_pred EEEec-ccccccCceeEEEECCCCCEEEEecCC-------CCEEEEECCCCc
Confidence 44210 001112222333433456777777763 358888887643
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=94.21 E-value=5.4 Score=40.43 Aligned_cols=114 Identities=10% Similarity=-0.029 Sum_probs=51.5
Q ss_pred EEEEEccCCCCc-ccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCE-EEEEcccCCCcCcCeEEEEECCCCcEE
Q 006334 39 AVYIFGGCCGGL-HFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHK-MIVFGGTNGYKKVNDLHILDLESKEWM 116 (650)
Q Consensus 39 ~IyvfGG~~~~~-~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~-lyVfGG~~~~~~~ndv~~yD~~t~~W~ 116 (650)
..+++|.+.... ..-.+|.+|..+.++..+... .. ....+.+..-+++ ||+.+..+.....-.+|.+|..+.+.+
T Consensus 14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~-~~--~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~ 90 (361)
T 3scy_A 14 LTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA-EV--ANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLH 90 (361)
T ss_dssp EEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE-EC--SCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEE
T ss_pred eEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc-cC--CCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEE
Confidence 344556664321 112355667788888776543 11 1112222233454 655543221111223456666667776
Q ss_pred eeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCC
Q 006334 117 RPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKT 165 (650)
Q Consensus 117 ~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t 165 (650)
.+... +..........+..+.||+.. ..+ ..+.+|++..
T Consensus 91 ~~~~~---~~~~~~p~~~~~dg~~l~~~~-~~~------~~v~~~~~~~ 129 (361)
T 3scy_A 91 LLNTQ---KTMGADPCYLTTNGKNIVTAN-YSG------GSITVFPIGQ 129 (361)
T ss_dssp EEEEE---ECSSSCEEEEEECSSEEEEEE-TTT------TEEEEEEBCT
T ss_pred EeeEe---ccCCCCcEEEEECCCEEEEEE-CCC------CEEEEEEeCC
Confidence 65221 111112222223334555543 321 3577888764
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=94.16 E-value=1.6 Score=45.00 Aligned_cols=183 Identities=12% Similarity=0.139 Sum_probs=91.0
Q ss_pred CCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcC-CEEEEEccccCCCCcccceEEEEecCC
Q 006334 87 GHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGD-DKMVIFGGSGEGEANYLNDLHVLDLKT 165 (650)
Q Consensus 87 ~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~-~~Lyv~GG~~~~~~~~~~dv~~yd~~t 165 (650)
+++.++.|+.++ .+.++|..+.+....- .+ ....-.++....+ +.+++.||.+ ..+.+||+.+
T Consensus 150 dg~~l~sgs~dg-----~v~iwd~~~~~~~~~~-~~---h~~~v~~v~~s~~~~~~~~s~~~d-------g~v~~wd~~~ 213 (357)
T 4g56_B 150 DGTQAVSGGKDF-----SVKVWDLSQKAVLKSY-NA---HSSEVNCVAACPGKDTIFLSCGED-------GRILLWDTRK 213 (357)
T ss_dssp SSSEEEEEETTS-----CEEEEETTTTEEEEEE-CC---CSSCEEEEEECTTCSSCEEEEETT-------SCEEECCTTS
T ss_pred CCCEEEEEeCCC-----eEEEEECCCCcEEEEE-cC---CCCCEEEEEEccCCCceeeeeccC-------CceEEEECCC
Confidence 667777787644 4788898887654320 11 0111122222233 3467777763 2477888876
Q ss_pred CceeeccccCCCCCCCCcceeeee---cCEEEEEeccCCCCccCeEEEEECCCCcEE-EeeecCCCCCcccceEEEEE--
Q 006334 166 MRWASPAVKGDIPVPRDSHSSNVI---ANRLFVYGGDCGDQYHGDIDMLDMNSLTWS-RLAIIGSSPGVRAGHAAINI-- 239 (650)
Q Consensus 166 ~~Wt~i~~~~~lP~~R~~hs~v~~---~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~-~i~~~g~~P~~R~~~s~v~~-- 239 (650)
.+-.... ...........+.+ ++.+++.|+.+ ..+..||+.+.+-. .+. . ......++.+
T Consensus 214 ~~~~~~~---~~~~~~~~v~~v~~sp~~~~~la~g~~d-----~~i~~wd~~~~~~~~~~~---~---~~~~v~~l~~sp 279 (357)
T 4g56_B 214 PKPATRI---DFCASDTIPTSVTWHPEKDDTFACGDET-----GNVSLVNIKNPDSAQTSA---V---HSQNITGLAYSY 279 (357)
T ss_dssp SSCBCBC---CCTTCCSCEEEEEECTTSTTEEEEEESS-----SCEEEEESSCGGGCEEEC---C---CSSCEEEEEECS
T ss_pred Cceeeee---eeccccccccchhhhhcccceEEEeecc-----cceeEEECCCCcEeEEEe---c---cceeEEEEEEcC
Confidence 5433211 11111111122222 35677777755 36888998765421 111 1 1111222222
Q ss_pred CC-EEEEEeccCCCcccCeEEEEECCCCcEEEeecCCCCCCCcceeEEEEE--CCeEEEEcCCCCCCCCCCcEEEEecC
Q 006334 240 GT-KVYIIGGVGDKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVT--GSDIVIYGGCGEDERPLNELLVLQLG 315 (650)
Q Consensus 240 ~~-~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~~~~~~p~~R~~hsav~~--~~~lyV~GG~~~~~~~~~d~~~l~l~ 315 (650)
++ ++++.|+.+ ..+.+||+++.+..... + ....-.++++. ++.+++.||.+ ..+.++++.
T Consensus 280 ~~~~~lasgs~D-----~~i~iwd~~~~~~~~~~--~---H~~~V~~vafsP~d~~~l~s~s~D------g~v~iW~~~ 342 (357)
T 4g56_B 280 HSSPFLASISED-----CTVAVLDADFSEVFRDL--S---HRDFVTGVAWSPLDHSKFTTVGWD------HKVLHHHLP 342 (357)
T ss_dssp SSSCCEEEEETT-----SCEEEECTTSCEEEEEC--C---CSSCEEEEEECSSSTTEEEEEETT------SCEEEEECC
T ss_pred CCCCEEEEEeCC-----CEEEEEECCCCcEeEEC--C---CCCCEEEEEEeCCCCCEEEEEcCC------CeEEEEECC
Confidence 33 566666643 35888999877544321 1 11111233332 56788888753 245666664
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=94.12 E-value=0.79 Score=46.98 Aligned_cols=202 Identities=9% Similarity=-0.014 Sum_probs=99.5
Q ss_pred ceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCC-cCcCeEEEEECCCCcEEeeecCCCCCCCC-c
Q 006334 53 GDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW-GHKMIVFGGTNGY-KKVNDLHILDLESKEWMRPECRGAPPSPR-E 129 (650)
Q Consensus 53 ~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~-~~~lyVfGG~~~~-~~~ndv~~yD~~t~~W~~l~~~~~~P~~R-~ 129 (650)
..++++|+.++....+... .....+..... +++.+++...... .....+|.+|..+..+..+.. ..+. .
T Consensus 168 ~~l~~~d~~~g~~~~~~~~----~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~----~~~~~~ 239 (396)
T 3c5m_A 168 CRLIKVDIETGELEVIHQD----TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKE----HAEGES 239 (396)
T ss_dssp EEEEEEETTTCCEEEEEEE----SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSC----CCTTEE
T ss_pred ceEEEEECCCCcEEeeccC----CcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeec----cCCCcc
Confidence 4789999998887766532 11222223333 3543333322111 123679999998887776521 1111 1
Q ss_pred ccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee-cCEEEEEeccCC-------
Q 006334 130 SHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI-ANRLFVYGGDCG------- 201 (650)
Q Consensus 130 ~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~-~~~Iyv~GG~~~------- 201 (650)
........+++.+++...... .....++++|+.+.+...+. ..+. .. ....- +++++++.+...
T Consensus 240 ~~~~~~spdg~~l~~~~~~~~--~~~~~l~~~d~~~g~~~~l~---~~~~--~~-~~~s~~dg~~l~~~~~~~p~~~~~~ 311 (396)
T 3c5m_A 240 CTHEFWIPDGSAMAYVSYFKG--QTDRVIYKANPETLENEEVM---VMPP--CS-HLMSNFDGSLMVGDGCDAPVDVADA 311 (396)
T ss_dssp EEEEEECTTSSCEEEEEEETT--TCCEEEEEECTTTCCEEEEE---ECCS--EE-EEEECSSSSEEEEEECCC-------
T ss_pred ccceEECCCCCEEEEEecCCC--CccceEEEEECCCCCeEEee---eCCC--CC-CCccCCCCceEEEecCCcceeeccc
Confidence 222233345554444433211 11234999999888766544 2221 11 12222 566666654221
Q ss_pred ----CCccCeEEEEECCCCcEEEeeecCCCC-----C-c-ccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCcEEE
Q 006334 202 ----DQYHGDIDMLDMNSLTWSRLAIIGSSP-----G-V-RAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQ 270 (650)
Q Consensus 202 ----~~~~n~v~~yd~~t~~W~~i~~~g~~P-----~-~-R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~ 270 (650)
......++++|+.+.+...+....... . . .........+++.+++..... ....+|.+|+.+..++.
T Consensus 312 ~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~--~~~~l~~~~~~~~~~~~ 389 (396)
T 3c5m_A 312 DSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFE--GVPAIYIADVPESYKHL 389 (396)
T ss_dssp ---CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTT--SSCEEEEEECCTTCC--
T ss_pred cccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCC--CCceEEEEEEccccccc
Confidence 112367999999888776665321100 0 0 011112223444344433322 23579999999888776
Q ss_pred ee
Q 006334 271 LD 272 (650)
Q Consensus 271 l~ 272 (650)
+.
T Consensus 390 ~~ 391 (396)
T 3c5m_A 390 EH 391 (396)
T ss_dssp --
T ss_pred cc
Confidence 54
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=94.09 E-value=6.6 Score=40.99 Aligned_cols=207 Identities=12% Similarity=0.086 Sum_probs=91.3
Q ss_pred eEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEE
Q 006334 54 DVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTA 133 (650)
Q Consensus 54 dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~ 133 (650)
.+.+||..+++-...... ......+...++.+++.|+.+ ..++.+|............+ ........
T Consensus 170 ~v~iWd~~~~~~~~~~~~-----h~~~v~~~s~~~~~l~sgs~d-----~~i~~~d~~~~~~~~~~~~~---h~~~~~~~ 236 (420)
T 4gga_A 170 EVQLWDVQQQKRLRNMTS-----HSARVGSLSWNSYILSSGSRS-----GHIHHHDVRVAEHHVATLSG---HSQEVCGL 236 (420)
T ss_dssp CEEEEETTTTEEEEEECC-----CSSCEEEEEEETTEEEEEETT-----SEEEEEETTSSSCEEEEEEC---CSSCEEEE
T ss_pred eEEEEEcCCCcEEEEEeC-----CCCceEEEeeCCCEEEEEeCC-----CceeEeeecccceeeEEecc---cccceeee
Confidence 466667666543222111 111223334456667767653 35667776654332211111 01112222
Q ss_pred EEEcCCEEEEEccccCCCCcccceEEEEecCCCce--eeccccCCCCCCCCcceeee--ecCEEEEE-eccCCCCccCeE
Q 006334 134 TLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRW--ASPAVKGDIPVPRDSHSSNV--IANRLFVY-GGDCGDQYHGDI 208 (650)
Q Consensus 134 ~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~W--t~i~~~~~lP~~R~~hs~v~--~~~~Iyv~-GG~~~~~~~n~v 208 (650)
....++..++.|+.+ +.+.++|..+..- ..+......... -.+++. .+..+++. ||..+ ..+
T Consensus 237 ~~~~~g~~l~s~~~D-------~~v~i~~~~~~~~~~~~~~~~~~~~~~--V~~~~~~p~~~~~la~~~gs~D----~~I 303 (420)
T 4gga_A 237 RWAPDGRHLASGGND-------NLVNVWPSAPGEGGWVPLQTFTQHQGA--VKAVAWCPWQSNVLATGGGTSD----RHI 303 (420)
T ss_dssp EECTTSSEEEEEETT-------SCEEEEESSCCSSCSCCSEEECCCSSC--EEEEEECTTCTTEEEEEECTTT----CEE
T ss_pred eecCCCCeeeeeecc-------ccceEEeeccccccceeeeeecccCCc--eeeeeeCCCcccEEEEEeecCC----CEE
Confidence 333456667777653 2466777655431 111100000000 111111 13344444 44322 468
Q ss_pred EEEECCCCcEEEeeecCCCCCcccceEEEEE--CCEEEEEeccCCCcccCeEEEEECCCCcEEEeecCCCCCCCcceeEE
Q 006334 209 DMLDMNSLTWSRLAIIGSSPGVRAGHAAINI--GTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAA 286 (650)
Q Consensus 209 ~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~--~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~~~~~~p~~R~~hsa 286 (650)
..||+.+..-...-.. . ....+++.. ++.+++.+|..+ ..|.+||+.+.+- +.... .-..+.. ++
T Consensus 304 ~iwd~~t~~~~~~~~~---~--~~v~~~~~~~~~~~lv~~sg~~d----~~I~iwd~~~~~~--v~~l~-gH~~~V~-~l 370 (420)
T 4gga_A 304 RIWNVCSGACLSAVDA---H--SQVCSILWSPHYKELISGHGFAQ----NQLVIWKYPTMAK--VAELK-GHTSRVL-SL 370 (420)
T ss_dssp EEEETTTTEEEEEEEC---S--SCEEEEEEETTTTEEEEEECTTT----CCEEEEETTTCCE--EEEEC-CCSSCEE-EE
T ss_pred EEEeCCccccceeecc---c--cceeeeeecCCCCeEEEEEecCC----CEEEEEECCCCcE--EEEEc-CCCCCEE-EE
Confidence 8899988765443311 1 111222222 346666656543 3588999876643 22210 1112222 22
Q ss_pred EEE-CCeEEEEcCC
Q 006334 287 VVT-GSDIVIYGGC 299 (650)
Q Consensus 287 v~~-~~~lyV~GG~ 299 (650)
++. ++.+++.||.
T Consensus 371 ~~spdg~~l~S~s~ 384 (420)
T 4gga_A 371 TMSPDGATVASAAA 384 (420)
T ss_dssp EECTTSSCEEEEET
T ss_pred EEcCCCCEEEEEec
Confidence 222 5677777774
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=94.09 E-value=2 Score=47.87 Aligned_cols=198 Identities=12% Similarity=-0.001 Sum_probs=108.8
Q ss_pred cceEEEEECCC------CcEEEee-cCCCCCCCCcceEEEEECCEEEEEcccCCCc---CcCeEEEEECC-CC---cEEe
Q 006334 52 FGDVLMLNLDT------MVWSTLA-TTGQGPGPRDSHSAILWGHKMIVFGGTNGYK---KVNDLHILDLE-SK---EWMR 117 (650)
Q Consensus 52 ~~dv~~yD~~t------~sW~~l~-~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~---~~ndv~~yD~~-t~---~W~~ 117 (650)
..++|++|..+ .....+. .. + .........-+++.+++...+... ...++|++|+. +. ....
T Consensus 160 ~~~i~~~~~~~~~~~~~~~~~~l~~~~---~-~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~ 235 (662)
T 3azo_A 160 RRFLAAVPLDGSAAADRSAVRELSDDA---H-RFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRT 235 (662)
T ss_dssp EEEEEEEETTSTTTTCGGGSEESSCSC---S-SEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEE
T ss_pred eeEEEEEECCCCccccCCceeEEEecC---C-CcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEE
Confidence 46899999988 6666554 21 1 112222233366655555543321 13689999998 56 3444
Q ss_pred eecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccC-CCCCCCC---cceeeee-cCE
Q 006334 118 PECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKG-DIPVPRD---SHSSNVI-ANR 192 (650)
Q Consensus 118 l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~-~lP~~R~---~hs~v~~-~~~ 192 (650)
+... ............++++|+.+..+ . ...+|++|+.+.+|..+.... ..-.+.. ...++.. +++
T Consensus 236 l~~~----~~~~~~~~~~spdg~l~~~~~~~---~--~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~ 306 (662)
T 3azo_A 236 LLGG----PEEAIAQAEWAPDGSLIVATDRT---G--WWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGL 306 (662)
T ss_dssp EEEE----TTBCEEEEEECTTSCEEEEECTT---S--SCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSC
T ss_pred eCCC----CCceEcceEECCCCeEEEEECCC---C--CeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCE
Confidence 3111 01112233334467777766542 1 247999999888888764211 1101111 1122332 566
Q ss_pred EEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEE-EEECCEEEEEeccCCCcccCeEEEEECCCCcEEEe
Q 006334 193 LFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAA-INIGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQL 271 (650)
Q Consensus 193 Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~-v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l 271 (650)
+++.+.. -...+|.+|+.+.....+.. +.. ....+ ...++.+++..+.. ....++|.+|+.+.+...+
T Consensus 307 ~~~~~~~----~~~~l~~~d~~~~~~~~l~~----~~~-~~~~~~s~~~~~~~~~~~~~--~~~~~i~~~d~~~g~~~~l 375 (662)
T 3azo_A 307 IAVVHGK----GAAVLGILDPESGELVDAAG----PWT-EWAATLTVSGTRAVGVAASP--RTAYEVVELDTVTGRARTI 375 (662)
T ss_dssp EEEEEBS----SSCEEEEEETTTTEEEECCS----SCC-EEEEEEEEETTEEEEEEEET--TEEEEEEEEETTTCCEEEE
T ss_pred EEEEEEc----CccEEEEEECCCCcEEEecC----CCC-eEEEEEecCCCEEEEEEcCC--CCCCEEEEEECCCCceEEe
Confidence 7666553 24578999998888776642 111 11222 33456666654432 2345799999999998887
Q ss_pred ec
Q 006334 272 DT 273 (650)
Q Consensus 272 ~~ 273 (650)
..
T Consensus 376 ~~ 377 (662)
T 3azo_A 376 GA 377 (662)
T ss_dssp ES
T ss_pred ec
Confidence 54
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=94.04 E-value=1.7 Score=44.55 Aligned_cols=202 Identities=10% Similarity=0.077 Sum_probs=95.5
Q ss_pred EEEEEccCCCCcccceEEEEECCCCc------EEEeecCCCCCC-CCcceEEEEE-----CCEE-EEEcccCCCcCcCeE
Q 006334 39 AVYIFGGCCGGLHFGDVLMLNLDTMV------WSTLATTGQGPG-PRDSHSAILW-----GHKM-IVFGGTNGYKKVNDL 105 (650)
Q Consensus 39 ~IyvfGG~~~~~~~~dv~~yD~~t~s------W~~l~~~g~~P~-pR~~hsa~~~-----~~~l-yVfGG~~~~~~~ndv 105 (650)
.+++.|+.+ ..+.+||..+.. +..+..... .. ...-.++.+. ++.. ++.|+.++ .+
T Consensus 82 ~~l~s~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg-----~i 150 (397)
T 1sq9_A 82 CLVATTSFS-----GDLLFYRITREDETKKVIFEKLDLLDS-DMKKHSFWALKWGASNDRLLSHRLVATDVKG-----TT 150 (397)
T ss_dssp EEEEEEETT-----SCEEEEEEEECTTTCCEEEEEECCSCT-TGGGSCEEEEEEECCC----CEEEEEEETTS-----CE
T ss_pred cEEEEEcCC-----CCEEEEEccCCcccccccceeeccccc-ccCCCcEEEEEEeeccCCCCceEEEEEeCCC-----cE
Confidence 777777754 357888877665 665543310 00 0112233333 4556 77777643 46
Q ss_pred EEEECCC------Cc---EE---eeec--CCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeec
Q 006334 106 HILDLES------KE---WM---RPEC--RGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASP 171 (650)
Q Consensus 106 ~~yD~~t------~~---W~---~l~~--~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i 171 (650)
..||+.+ .. |. .+.. .........-.++....++ +++.|+.+ ..+.+||+.+.+....
T Consensus 151 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d-------g~i~i~d~~~~~~~~~ 222 (397)
T 1sq9_A 151 YIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNN-------GTVQISELSTLRPLYN 222 (397)
T ss_dssp EEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTT-------SEEEEEETTTTEEEEE
T ss_pred EEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCC-------CcEEEEECCCCceeEE
Confidence 6777665 21 21 1100 0001112223344445566 77777653 3588999887654321
Q ss_pred cccCCCCCC---CCcceeeee--cCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCC--------cccceEEEE
Q 006334 172 AVKGDIPVP---RDSHSSNVI--ANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPG--------VRAGHAAIN 238 (650)
Q Consensus 172 ~~~~~lP~~---R~~hs~v~~--~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~--------~R~~~s~v~ 238 (650)
- . ..... ...-..+.+ ++.+++.|+.++ ....+.+||+.+.+-...-.....+. .......+.
T Consensus 223 ~-~-~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~--~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 298 (397)
T 1sq9_A 223 F-E-SQHSMINNSNSIRSVKFSPQGSLLAIAHDSN--SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLS 298 (397)
T ss_dssp E-E-CCC---CCCCCEEEEEECSSTTEEEEEEEET--TEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEE
T ss_pred E-e-ccccccccCCccceEEECCCCCEEEEEecCC--CCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEE
Confidence 1 0 10000 111122222 466677776431 11478899987765332210000000 111222222
Q ss_pred E--CCEEEEEeccCCCcccCeEEEEECCCCcE
Q 006334 239 I--GTKVYIIGGVGDKHYYNDIWILNVSTCSW 268 (650)
Q Consensus 239 ~--~~~IyI~GG~~~~~~~~dv~~yD~~t~~W 268 (650)
+ ++++++.|+.+ ..+.+||+.+.+-
T Consensus 299 ~~~~~~~l~~~~~d-----g~i~iwd~~~~~~ 325 (397)
T 1sq9_A 299 FNDSGETLCSAGWD-----GKLRFWDVKTKER 325 (397)
T ss_dssp ECSSSSEEEEEETT-----SEEEEEETTTTEE
T ss_pred ECCCCCEEEEEeCC-----CeEEEEEcCCCce
Confidence 2 45677776643 3689999987754
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=93.95 E-value=1.5 Score=49.73 Aligned_cols=214 Identities=9% Similarity=0.014 Sum_probs=114.5
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCC--------cCcCeEEEE
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGY--------KKVNDLHIL 108 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~--------~~~ndv~~y 108 (650)
+++.++|.-........+++++|+.++........ +.......+..-+++.++++..+.. ....++|++
T Consensus 131 DG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~---~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~ 207 (695)
T 2bkl_A 131 DGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVI---EGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYH 207 (695)
T ss_dssp TSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCB---SCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEE
T ss_pred CCCEEEEEECCCCCceEEEEEEECCCCCCcCCccc---CcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEE
Confidence 45555554433333345899999998875311111 1112222233346777777766443 235679999
Q ss_pred ECCCCcE--EeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCccee
Q 006334 109 DLESKEW--MRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSS 186 (650)
Q Consensus 109 D~~t~~W--~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~ 186 (650)
++.+..- ..+ ......+..........+++.+++...... ..+++|.+|..+..|..+.... . .....
T Consensus 208 ~l~t~~~~~~lv--~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~---~~~~l~~~~~~~~~~~~l~~~~----~-~~~~~ 277 (695)
T 2bkl_A 208 TLGTEPSKDTVV--HERTGDPTTFLQSDLSRDGKYLFVYILRGW---SENDVYWKRPGEKDFRLLVKGV----G-AKYEV 277 (695)
T ss_dssp ETTSCGGGCEEE--ECCCCCTTCEEEEEECTTSCCEEEEEEETT---TEEEEEEECTTCSSCEEEEECS----S-CCEEE
T ss_pred ECCCCchhceEE--EecCCCCEEEEEEEECCCCCEEEEEEeCCC---CceEEEEEcCCCCceEEeecCC----C-ceEEE
Confidence 9988753 222 111112233344444556666666554221 3467888887777787665211 1 11222
Q ss_pred eeecCEEEEEeccCCCCccCeEEEEECCCCc---EEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEEC
Q 006334 187 NVIANRLFVYGGDCGDQYHGDIDMLDMNSLT---WSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNV 263 (650)
Q Consensus 187 v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~---W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~ 263 (650)
+..++.+|+....+ .....++++|+.+.. |..+... .+. ..-..+...++++++....+. ...+|.+++
T Consensus 278 ~~~~g~l~~~s~~~--~~~~~l~~~d~~~~~~~~~~~l~~~--~~~-~~l~~~~~~~~~lv~~~~~dg---~~~l~~~~~ 349 (695)
T 2bkl_A 278 HAWKDRFYVLTDEG--APRQRVFEVDPAKPARASWKEIVPE--DSS-ASLLSVSIVGGHLSLEYLKDA---TSEVRVATL 349 (695)
T ss_dssp EEETTEEEEEECTT--CTTCEEEEEBTTBCSGGGCEEEECC--CSS-CEEEEEEEETTEEEEEEEETT---EEEEEEEET
T ss_pred EecCCcEEEEECCC--CCCCEEEEEeCCCCCccCCeEEecC--CCC-CeEEEEEEECCEEEEEEEECC---EEEEEEEeC
Confidence 33455566654322 234689999987754 8877621 111 112223344788877765432 357899998
Q ss_pred CCCcEEEe
Q 006334 264 STCSWSQL 271 (650)
Q Consensus 264 ~t~~W~~l 271 (650)
....-..+
T Consensus 350 ~g~~~~~l 357 (695)
T 2bkl_A 350 KGKPVRTV 357 (695)
T ss_dssp TCCEEEEC
T ss_pred CCCeeEEe
Confidence 65544444
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=93.87 E-value=6.9 Score=44.45 Aligned_cols=193 Identities=12% Similarity=0.051 Sum_probs=96.5
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCcCcCeEEEEECCCC-c
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW-GHKMIVFGGTNGYKKVNDLHILDLESK-E 114 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~-~~~lyVfGG~~~~~~~ndv~~yD~~t~-~ 114 (650)
++..++.|+.+ ..+.+||..++........ . ...-.++++. ++..++.|+.+ ..+.+||..++ .
T Consensus 66 ~~~~l~~~~~d-----g~i~vw~~~~~~~~~~~~~-~---~~~v~~~~~s~~~~~l~~~~~d-----g~i~vw~~~~~~~ 131 (814)
T 3mkq_A 66 RKNWIIVGSDD-----FRIRVFNYNTGEKVVDFEA-H---PDYIRSIAVHPTKPYVLSGSDD-----LTVKLWNWENNWA 131 (814)
T ss_dssp GGTEEEEEETT-----SEEEEEETTTCCEEEEEEC-C---SSCEEEEEECSSSSEEEEEETT-----SEEEEEEGGGTSE
T ss_pred CCCEEEEEeCC-----CeEEEEECCCCcEEEEEec-C---CCCEEEEEEeCCCCEEEEEcCC-----CEEEEEECCCCce
Confidence 34555555542 4688999988776543221 1 1111223332 56566666643 35788888765 3
Q ss_pred EEeeecCCCCCCCCcccEEEEEc-CCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee---c
Q 006334 115 WMRPECRGAPPSPRESHTATLVG-DDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI---A 190 (650)
Q Consensus 115 W~~l~~~~~~P~~R~~hs~~~~~-~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~---~ 190 (650)
....- .+ ....-.++.... ++.+++.|+.+ ..+.+||+.+..-.... ..........+... +
T Consensus 132 ~~~~~-~~---~~~~v~~~~~~p~~~~~l~~~~~d-------g~v~vwd~~~~~~~~~~---~~~~~~~v~~~~~~~~~~ 197 (814)
T 3mkq_A 132 LEQTF-EG---HEHFVMCVAFNPKDPSTFASGCLD-------RTVKVWSLGQSTPNFTL---TTGQERGVNYVDYYPLPD 197 (814)
T ss_dssp EEEEE-EC---CSSCEEEEEEETTEEEEEEEEETT-------SEEEEEETTCSSCSEEE---ECCCTTCCCEEEECCSTT
T ss_pred EEEEE-cC---CCCcEEEEEEEcCCCCEEEEEeCC-------CeEEEEECCCCcceeEE---ecCCCCCEEEEEEEECCC
Confidence 32221 11 111122333333 46677777763 35888888654332211 01111112222222 5
Q ss_pred CEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCcEEE
Q 006334 191 NRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQ 270 (650)
Q Consensus 191 ~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~ 270 (650)
+.+++.|+.+ ..+..||..+.+-...-. . ........+...++.+++.|+.+ ..+.+||+.+.+-..
T Consensus 198 ~~~l~~~~~d-----g~i~~~d~~~~~~~~~~~--~-~~~~v~~~~~~~~~~~l~~~~~d-----g~v~vwd~~~~~~~~ 264 (814)
T 3mkq_A 198 KPYMITASDD-----LTIKIWDYQTKSCVATLE--G-HMSNVSFAVFHPTLPIIISGSED-----GTLKIWNSSTYKVEK 264 (814)
T ss_dssp CCEEEEECTT-----SEEEEEETTTTEEEEEEE--C-CSSCEEEEEECSSSSEEEEEETT-----SCEEEEETTTCSEEE
T ss_pred CCEEEEEeCC-----CEEEEEECCCCcEEEEEc--C-CCCCEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCcEEE
Confidence 6677777754 478899988765332211 1 11111111122245677777654 358888988765433
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=93.87 E-value=4.5 Score=39.88 Aligned_cols=146 Identities=14% Similarity=0.183 Sum_probs=72.8
Q ss_pred ceEEEEECCCCcEEEeecCCCCCCCC-cceEEEE-ECC-EEEEEcccCCCcCcCeEEEEECCCCcEEe-eecCCCCC-CC
Q 006334 53 GDVLMLNLDTMVWSTLATTGQGPGPR-DSHSAIL-WGH-KMIVFGGTNGYKKVNDLHILDLESKEWMR-PECRGAPP-SP 127 (650)
Q Consensus 53 ~dv~~yD~~t~sW~~l~~~g~~P~pR-~~hsa~~-~~~-~lyVfGG~~~~~~~ndv~~yD~~t~~W~~-l~~~~~~P-~~ 127 (650)
+.++++|..+.+.......+. .. .-+.+++ .++ .+|+.+.. ...++++|+.+.+-.. +... ... ..
T Consensus 11 ~~v~~~d~~~~~~~~~~~~~~---~~~~~~~~~~s~dg~~l~v~~~~-----~~~v~~~d~~~~~~~~~~~~~-~~~~~~ 81 (337)
T 1pby_B 11 DKLVVIDTEKMAVDKVITIAD---AGPTPMVPMVAPGGRIAYATVNK-----SESLVKIDLVTGETLGRIDLS-TPEERV 81 (337)
T ss_dssp TEEEEEETTTTEEEEEEECTT---CTTCCCCEEECTTSSEEEEEETT-----TTEEEEEETTTCCEEEEEECC-BTTEEE
T ss_pred CeEEEEECCCCcEEEEEEcCC---CCCCccceEEcCCCCEEEEEeCC-----CCeEEEEECCCCCeEeeEEcC-Cccccc
Confidence 479999998876544333211 10 1123333 344 67776542 2579999998876543 2111 100 00
Q ss_pred CcccEEEEEcCC-EEEEEccccC-CCCc---ccceEEEEecCCCceeeccccCCCCCCCCcceeeee-cC-EEEEEeccC
Q 006334 128 RESHTATLVGDD-KMVIFGGSGE-GEAN---YLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI-AN-RLFVYGGDC 200 (650)
Q Consensus 128 R~~hs~~~~~~~-~Lyv~GG~~~-~~~~---~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~-~~-~Iyv~GG~~ 200 (650)
..-..+.+..++ .||+...... .... .-+.+++||+.+.+....-.. ...-+.++.. ++ .||+.+
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-----~~~~~~~~~s~dg~~l~~~~--- 153 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-----PRQITMLAWARDGSKLYGLG--- 153 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-----CSSCCCEEECTTSSCEEEES---
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-----CCCcceeEECCCCCEEEEeC---
Confidence 012234444455 5666531100 0001 126799999987765432211 1111223322 33 466652
Q ss_pred CCCccCeEEEEECCCCcEEE
Q 006334 201 GDQYHGDIDMLDMNSLTWSR 220 (650)
Q Consensus 201 ~~~~~n~v~~yd~~t~~W~~ 220 (650)
+.+++||+.+.+-..
T Consensus 154 -----~~i~~~d~~~~~~~~ 168 (337)
T 1pby_B 154 -----RDLHVMDPEAGTLVE 168 (337)
T ss_dssp -----SSEEEEETTTTEEEE
T ss_pred -----CeEEEEECCCCcEee
Confidence 479999998876543
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=93.86 E-value=5.1 Score=38.89 Aligned_cols=190 Identities=10% Similarity=0.006 Sum_probs=101.6
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCcCcCeEEEEECCCCcE
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW-GHKMIVFGGTNGYKKVNDLHILDLESKEW 115 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~-~~~lyVfGG~~~~~~~ndv~~yD~~t~~W 115 (650)
++.||+.... .+.+++||+. +++....... ....-+.+++. ++++|+.... .+.+++||+. .+.
T Consensus 72 ~g~l~v~~~~-----~~~v~~~d~~-g~~~~~~~~~---~~~~~~~i~~~~~g~l~v~~~~-----~~~i~~~~~~-g~~ 136 (300)
T 2qc5_A 72 LGDIWFTENG-----ANKIGKLSKK-GGFTEYPLPQ---PDSGPYGITEGLNGDIWFTQLN-----GDRIGKLTAD-GTI 136 (300)
T ss_dssp TSCEEEEETT-----TTEEEEECTT-SCEEEEECSS---TTCCEEEEEECSTTCEEEEETT-----TTEEEEECTT-SCE
T ss_pred CCCEEEEecC-----CCeEEEECCC-CCeEEecCCC---CCCCCccceECCCCCEEEEccC-----CCeEEEECCC-CCE
Confidence 3677775431 2468999988 6776554321 11223344443 5788886432 2468999987 665
Q ss_pred EeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee--cCEE
Q 006334 116 MRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI--ANRL 193 (650)
Q Consensus 116 ~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~--~~~I 193 (650)
....... ....-..++...+++||+.... ...+++||+ +.++..+.. +........+.+ ++.+
T Consensus 137 ~~~~~~~---~~~~~~~i~~d~~g~l~v~~~~-------~~~i~~~~~-~g~~~~~~~----~~~~~~~~~i~~d~~g~l 201 (300)
T 2qc5_A 137 YEYDLPN---KGSYPAFITLGSDNALWFTENQ-------NNSIGRITN-TGKLEEYPL----PTNAAAPVGITSGNDGAL 201 (300)
T ss_dssp EEEECSS---TTCCEEEEEECTTSSEEEEETT-------TTEEEEECT-TCCEEEEEC----SSTTCCEEEEEECTTSSE
T ss_pred EEccCCC---CCCCceeEEECCCCCEEEEecC-------CCeEEEECC-CCcEEEeeC----CCCCCCcceEEECCCCCE
Confidence 5442111 1122234444456778875422 135889998 666655331 111111222222 4678
Q ss_pred EEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccc-eEEEEE-CCEEEEEeccCCCcccCeEEEEECCCCcEEEe
Q 006334 194 FVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAG-HAAINI-GTKVYIIGGVGDKHYYNDIWILNVSTCSWSQL 271 (650)
Q Consensus 194 yv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~-~s~v~~-~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l 271 (650)
|+.... .+.+++||+ +..+..... +..... .+++.. +++||+.... .+.+.+||+ +.+...+
T Consensus 202 ~v~~~~-----~~~i~~~~~-~g~~~~~~~----~~~~~~~~~i~~d~~g~l~v~~~~-----~~~i~~~~~-~g~~~~~ 265 (300)
T 2qc5_A 202 WFVEIM-----GNKIGRITT-TGEISEYDI----PTPNARPHAITAGKNSEIWFTEWG-----ANQIGRITN-DNTIQEY 265 (300)
T ss_dssp EEEETT-----TTEEEEECT-TCCEEEEEC----SSTTCCEEEEEECSTTCEEEEETT-----TTEEEEECT-TSCEEEE
T ss_pred EEEccC-----CCEEEEEcC-CCcEEEEEC----CCCCCCceEEEECCCCCEEEeccC-----CCeEEEECC-CCcEEEE
Confidence 876432 246899998 666666542 111122 233332 4578887421 357899998 4666655
Q ss_pred e
Q 006334 272 D 272 (650)
Q Consensus 272 ~ 272 (650)
.
T Consensus 266 ~ 266 (300)
T 2qc5_A 266 Q 266 (300)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1 | Back alignment and structure |
|---|
Probab=93.85 E-value=3.4 Score=39.88 Aligned_cols=154 Identities=14% Similarity=0.075 Sum_probs=85.9
Q ss_pred EEEEECCEEEEEccCCCCcccceEEEEECCCCcEEEeecC---CCCCCCCcceEEEEE--CCEEEEEcccCCCcCcCeEE
Q 006334 32 SACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATT---GQGPGPRDSHSAILW--GHKMIVFGGTNGYKKVNDLH 106 (650)
Q Consensus 32 s~v~~~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~---g~~P~pR~~hsa~~~--~~~lyVfGG~~~~~~~ndv~ 106 (650)
+++..++.+|+|=| +.+|+++.....+...... ...|. ... ++... ++++|+|=| +.+|
T Consensus 28 Ai~~~~g~~y~Fkg-------~~~wr~~~~~~~~~p~~I~~~wp~Lp~-~iD-Aa~~~~~~~~iyfFkG-------~~~w 91 (207)
T 1pex_A 28 AITSLRGETMIFKD-------RFFWRLHPQQVDAELFLTKSFWPELPN-RID-AAYEHPSHDLIFIFRG-------RKFW 91 (207)
T ss_dssp EEEEETTEEEEEET-------TEEEEECSSSSCCEEEEHHHHCTTSCS-SCC-EEEEETTTTEEEEEET-------TEEE
T ss_pred EEEeCCCcEEEEEC-------CEEEEEeCCCcCCCceehhHhccCCCC-Ccc-EEEEeccCCcEEEEcc-------CEEE
Confidence 45567899999988 3688888665444332221 12232 122 22222 589999987 5788
Q ss_pred EEECCCCc---EEeeecCCCCCC-CCcccEEEEEc-CCEEEEEccccCCCCcccceEEEEecCCCceee-----cc-ccC
Q 006334 107 ILDLESKE---WMRPECRGAPPS-PRESHTATLVG-DDKMVIFGGSGEGEANYLNDLHVLDLKTMRWAS-----PA-VKG 175 (650)
Q Consensus 107 ~yD~~t~~---W~~l~~~~~~P~-~R~~hs~~~~~-~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~-----i~-~~~ 175 (650)
+|+-.+-. =+.+...+ .|. ...--++.... ++++|+|-|. ..|+||..+++-.. +. .-.
T Consensus 92 ~~~~~~~~~gyPk~I~~~G-lP~~~~~IDAA~~~~~~gk~yfFkG~---------~ywr~d~~~~~~d~gyPr~i~~~~~ 161 (207)
T 1pex_A 92 ALNGYDILEGYPKKISELG-LPKEVKKISAAVHFEDTGKTLLFSGN---------QVWRYDDTNHIMDKDYPRLIEEDFP 161 (207)
T ss_dssp EESTTCCCTTCSEESTTTT-CCTTCCCCCEEEECTTTSEEEEEETT---------EEEEEETTTTEECSSCCCBHHHHST
T ss_pred EEeCCeeccCCceeccccC-CCCCCccccEEEEeCCCCEEEEEeCC---------EEEEEeCcCccccCCCCccHHHcCC
Confidence 88643211 12221111 221 11223333333 4899999774 48999986543221 00 001
Q ss_pred CCCCCCCcceeeeecCEEEEEeccCCCCccCeEEEEECCCCcEEE
Q 006334 176 DIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSR 220 (650)
Q Consensus 176 ~lP~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~ 220 (650)
.+| ..-.++...++++|+|-| +..|+||..+.+-..
T Consensus 162 Gip--~~iDaAf~~~g~~YfFkg-------~~y~rf~~~~~~v~~ 197 (207)
T 1pex_A 162 GIG--DKVDAVYEKNGYIYFFNG-------PIQFEYSIWSNRIVR 197 (207)
T ss_dssp TSC--SCCSEEEEETTEEEEEET-------TEEEEEETTTTEEEE
T ss_pred CCC--CCccEEEEcCCcEEEEEC-------CEEEEEeCCccEEec
Confidence 233 223344456899999988 689999988776544
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.81 E-value=6.6 Score=39.99 Aligned_cols=227 Identities=11% Similarity=0.019 Sum_probs=108.4
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCcCcCeEEEEECCCCcE
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW-GHKMIVFGGTNGYKKVNDLHILDLESKEW 115 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~-~~~lyVfGG~~~~~~~ndv~~yD~~t~~W 115 (650)
++.+++.|+.+ ..+.+||........+... ...-.++.+. +++.++.|+.+ ..+..||+.+.+.
T Consensus 119 ~~~~l~~~~~d-----g~i~i~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~ 183 (425)
T 1r5m_A 119 DGNSIVTGVEN-----GELRLWNKTGALLNVLNFH-----RAPIVSVKWNKDGTHIISMDVE-----NVTILWNVISGTV 183 (425)
T ss_dssp TSSEEEEEETT-----SCEEEEETTSCEEEEECCC-----CSCEEEEEECTTSSEEEEEETT-----CCEEEEETTTTEE
T ss_pred CCCEEEEEeCC-----CeEEEEeCCCCeeeeccCC-----CccEEEEEECCCCCEEEEEecC-----CeEEEEECCCCcE
Confidence 45666677653 3588888544433333221 1112233332 56666667653 3578888887764
Q ss_pred EeeecCCCCC-----------CCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcc
Q 006334 116 MRPECRGAPP-----------SPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSH 184 (650)
Q Consensus 116 ~~l~~~~~~P-----------~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~h 184 (650)
...-.....+ .......+....++. +++|+.+ ..+.+||+.+..-...- ... ...-.
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-------g~i~~~d~~~~~~~~~~---~~~-~~~i~ 251 (425)
T 1r5m_A 184 MQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDK-FVIPGPK-------GAIFVYQITEKTPTGKL---IGH-HGPIS 251 (425)
T ss_dssp EEEECCC---------------CCCBSCCEEEETTE-EEEECGG-------GCEEEEETTCSSCSEEE---CCC-SSCEE
T ss_pred EEEeeccccCccceeeccccCCcceeeEEEEcCCCE-EEEEcCC-------CeEEEEEcCCCceeeee---ccC-CCceE
Confidence 4321110100 000022333343444 5666653 35889998775332211 000 11112
Q ss_pred eeeee-cCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEE-CCEEEEEeccCCCcccCeEEEEE
Q 006334 185 SSNVI-ANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINI-GTKVYIIGGVGDKHYYNDIWILN 262 (650)
Q Consensus 185 s~v~~-~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~-~~~IyI~GG~~~~~~~~dv~~yD 262 (650)
++... ++.+++.|+.+ ..+.+||+.+.+....- .. ....-.+++.. ++ +++.|+.+ ..+.+||
T Consensus 252 ~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~---~~-~~~~i~~~~~~~~~-~l~~~~~d-----~~i~i~d 316 (425)
T 1r5m_A 252 VLEFNDTNKLLLSASDD-----GTLRIWHGGNGNSQNCF---YG-HSQSIVSASWVGDD-KVISCSMD-----GSVRLWS 316 (425)
T ss_dssp EEEEETTTTEEEEEETT-----SCEEEECSSSBSCSEEE---CC-CSSCEEEEEEETTT-EEEEEETT-----SEEEEEE
T ss_pred EEEECCCCCEEEEEcCC-----CEEEEEECCCCccceEe---cC-CCccEEEEEECCCC-EEEEEeCC-----CcEEEEE
Confidence 22222 45566676644 36888887765432221 01 11122233333 44 66666543 3789999
Q ss_pred CCCCcEEEeecCCCCCCCcceeEEEEE-CCeEEEEcCCCCCCCCCCcEEEEecC
Q 006334 263 VSTCSWSQLDTCGQQPQGRFSHAAVVT-GSDIVIYGGCGEDERPLNELLVLQLG 315 (650)
Q Consensus 263 ~~t~~W~~l~~~~~~p~~R~~hsav~~-~~~lyV~GG~~~~~~~~~d~~~l~l~ 315 (650)
+.+.+-...-.. .. ..-.++.+. ++.+++.|+.+ ..+.++++.
T Consensus 317 ~~~~~~~~~~~~---~~-~~i~~~~~s~~~~~l~~~~~d------g~i~i~~~~ 360 (425)
T 1r5m_A 317 LKQNTLLALSIV---DG-VPIFAGRISQDGQKYAVAFMD------GQVNVYDLK 360 (425)
T ss_dssp TTTTEEEEEEEC---TT-CCEEEEEECTTSSEEEEEETT------SCEEEEECH
T ss_pred CCCCcEeEeccc---CC-ccEEEEEEcCCCCEEEEEECC------CeEEEEECC
Confidence 987764433211 11 111222333 46677777642 356667664
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=93.76 E-value=5.2 Score=39.87 Aligned_cols=205 Identities=9% Similarity=-0.020 Sum_probs=100.8
Q ss_pred CEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCcCcCeEEEEECCCCcEE
Q 006334 38 GAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW-GHKMIVFGGTNGYKKVNDLHILDLESKEWM 116 (650)
Q Consensus 38 ~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~-~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~ 116 (650)
+.||+.+-. .+.+++||+. .....+... . ..-.+++.. +++||+.... ...+++||+. .+.+
T Consensus 57 ~~l~~~d~~-----~~~i~~~~~~-g~~~~~~~~----~-~~~~gl~~d~dG~l~v~~~~-----~~~v~~~~~~-g~~~ 119 (305)
T 3dr2_A 57 RTLVWSDLV-----GRRVLGWRED-GTVDVLLDA----T-AFTNGNAVDAQQRLVHCEHG-----RRAITRSDAD-GQAH 119 (305)
T ss_dssp TEEEEEETT-----TTEEEEEETT-SCEEEEEES----C-SCEEEEEECTTSCEEEEETT-----TTEEEEECTT-SCEE
T ss_pred CEEEEEECC-----CCEEEEEeCC-CCEEEEeCC----C-CccceeeECCCCCEEEEECC-----CCEEEEECCC-CCEE
Confidence 457666543 2468899984 555544332 1 112333333 5788875321 1468889886 5565
Q ss_pred eeecCCCCCCCCcccEEEEEcCCEEEEE----ccccC------CCCcccceEEEEecCCCceeeccccCCCCCCCCccee
Q 006334 117 RPECRGAPPSPRESHTATLVGDDKMVIF----GGSGE------GEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSS 186 (650)
Q Consensus 117 ~l~~~~~~P~~R~~hs~~~~~~~~Lyv~----GG~~~------~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~ 186 (650)
.+........-..-..+++..++.||+. |-..+ ........+++||+.+.+++.+. .+.. -..+
T Consensus 120 ~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~---~~~~---p~gl 193 (305)
T 3dr2_A 120 LLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA---DLDH---PNGL 193 (305)
T ss_dssp EEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE---EESS---EEEE
T ss_pred EEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe---cCCC---Ccce
Confidence 5421111000011233455557888885 43210 00111357999999888777543 1111 1222
Q ss_pred eee-c-CEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECC
Q 006334 187 NVI-A-NRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVS 264 (650)
Q Consensus 187 v~~-~-~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~ 264 (650)
+.. + ..||+..........+.+++||+..............+.......++-.++.||+..+ +.|++||++
T Consensus 194 ~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~-------~gv~~~~~~ 266 (305)
T 3dr2_A 194 AFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSSG-------TGVCVFDSD 266 (305)
T ss_dssp EECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECCS-------SEEEEECTT
T ss_pred EEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEecC-------CcEEEECCC
Confidence 322 3 3577764321111135799999876543222211111111111122223457777641 359999997
Q ss_pred CCcEEEee
Q 006334 265 TCSWSQLD 272 (650)
Q Consensus 265 t~~W~~l~ 272 (650)
......+.
T Consensus 267 g~~~~~~~ 274 (305)
T 3dr2_A 267 GQLLGHIP 274 (305)
T ss_dssp SCEEEEEE
T ss_pred CCEEEEEE
Confidence 77666665
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=93.75 E-value=7.1 Score=40.15 Aligned_cols=230 Identities=8% Similarity=0.047 Sum_probs=113.2
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCcCcCeEEEEECCCCcE
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW-GHKMIVFGGTNGYKKVNDLHILDLESKEW 115 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~-~~~lyVfGG~~~~~~~ndv~~yD~~t~~W 115 (650)
++.+++.|+.+ ..+.+||..+..-...... ....-.++++. ++++++.|+.++ .+.+||+.+.+-
T Consensus 108 ~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~----h~~~v~~~~~~~~~~~l~s~s~d~-----~i~iwd~~~~~~ 173 (420)
T 3vl1_A 108 QMRRFILGTTE-----GDIKVLDSNFNLQREIDQA----HVSEITKLKFFPSGEALISSSQDM-----QLKIWSVKDGSN 173 (420)
T ss_dssp SSCEEEEEETT-----SCEEEECTTSCEEEEETTS----SSSCEEEEEECTTSSEEEEEETTS-----EEEEEETTTCCC
T ss_pred CCCEEEEEECC-----CCEEEEeCCCcceeeeccc----ccCccEEEEECCCCCEEEEEeCCC-----eEEEEeCCCCcC
Confidence 45566666643 3578888876654333111 11122233333 566777777543 688899876542
Q ss_pred Ee-eecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCC-CCC------------
Q 006334 116 MR-PECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIP-VPR------------ 181 (650)
Q Consensus 116 ~~-l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP-~~R------------ 181 (650)
.. +. .....-.++....++.+++.|+.+ ..+.+||+.+.+-...-.....+ ...
T Consensus 174 ~~~~~-----~h~~~v~~~~~~~~~~~l~s~~~d-------~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 241 (420)
T 3vl1_A 174 PRTLI-----GHRATVTDIAIIDRGRNVLSASLD-------GTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ 241 (420)
T ss_dssp CEEEE-----CCSSCEEEEEEETTTTEEEEEETT-------SCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS
T ss_pred ceEEc-----CCCCcEEEEEEcCCCCEEEEEcCC-------CcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce
Confidence 21 11 011122344445567777777763 24778888765432211000000 000
Q ss_pred ------C-cceee-eecCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEE-CCE-EEEEeccCC
Q 006334 182 ------D-SHSSN-VIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINI-GTK-VYIIGGVGD 251 (650)
Q Consensus 182 ------~-~hs~v-~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~-~~~-IyI~GG~~~ 251 (650)
. ..++. .-++.+++.|+.+ ..+..||+.+..-.... .......-.+++.. ++. +++.|+.+
T Consensus 242 ~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~l~~g~~d- 312 (420)
T 3vl1_A 242 LHEISTSKKNNLEFGTYGKYVIAGHVS-----GVITVHNVFSKEQTIQL---PSKFTCSCNSLTVDGNNANYIYAGYEN- 312 (420)
T ss_dssp CGGGCCCCCCTTCSSCTTEEEEEEETT-----SCEEEEETTTCCEEEEE---CCTTSSCEEEEEECSSCTTEEEEEETT-
T ss_pred eeecccCcccceEEcCCCCEEEEEcCC-----CeEEEEECCCCceeEEc---ccccCCCceeEEEeCCCCCEEEEEeCC-
Confidence 0 00011 1246677777754 36899998876533322 11111112222222 334 77777653
Q ss_pred CcccCeEEEEECCCCc--EEEeecCCCCCCCcceeEEEEECCeEEEEcCCCCCCCCCCcEEEEecC
Q 006334 252 KHYYNDIWILNVSTCS--WSQLDTCGQQPQGRFSHAAVVTGSDIVIYGGCGEDERPLNELLVLQLG 315 (650)
Q Consensus 252 ~~~~~dv~~yD~~t~~--W~~l~~~~~~p~~R~~hsav~~~~~lyV~GG~~~~~~~~~d~~~l~l~ 315 (650)
..+.+||+.+.. -..+... ....-.++...++.+++.|+.+ ..+.++++.
T Consensus 313 ----g~i~vwd~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~l~s~~~d------~~v~iw~~~ 364 (420)
T 3vl1_A 313 ----GMLAQWDLRSPECPVGEFLIN----EGTPINNVYFAAGALFVSSGFD------TSIKLDIIS 364 (420)
T ss_dssp ----SEEEEEETTCTTSCSEEEEES----TTSCEEEEEEETTEEEEEETTT------EEEEEEEEC
T ss_pred ----CeEEEEEcCCCcCchhhhhcc----CCCCceEEEeCCCCEEEEecCC------ccEEEEecc
Confidence 368999998753 2222210 1111223344477788887742 345666654
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=93.74 E-value=2.7 Score=43.67 Aligned_cols=151 Identities=11% Similarity=0.099 Sum_probs=76.7
Q ss_pred CCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEc-CCEEEEEcc-ccCCCCcccceEEEEecC
Q 006334 87 GHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVG-DDKMVIFGG-SGEGEANYLNDLHVLDLK 164 (650)
Q Consensus 87 ~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~-~~~Lyv~GG-~~~~~~~~~~dv~~yd~~ 164 (650)
++.+++.|+.++ .+.+||+.+..-...- . .....-.++.... +..+++.|| ..+ ..+.+||+.
T Consensus 228 ~~~~l~s~~~d~-----~v~iwd~~~~~~~~~~-~---~~~~~v~~~~~~p~~~~ll~~~~gs~d------~~i~i~d~~ 292 (401)
T 4aez_A 228 DGLQLASGGNDN-----VVQIWDARSSIPKFTK-T---NHNAAVKAVAWCPWQSNLLATGGGTMD------KQIHFWNAA 292 (401)
T ss_dssp TSSEEEEEETTS-----CEEEEETTCSSEEEEE-C---CCSSCCCEEEECTTSTTEEEEECCTTT------CEEEEEETT
T ss_pred CCCEEEEEeCCC-----eEEEccCCCCCccEEe-c---CCcceEEEEEECCCCCCEEEEecCCCC------CEEEEEECC
Confidence 567777777643 6888999876543321 0 1112223334333 345777664 211 358889987
Q ss_pred CCceeeccccCCCCCCCCcceeeee-c-CEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCE
Q 006334 165 TMRWASPAVKGDIPVPRDSHSSNVI-A-NRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTK 242 (650)
Q Consensus 165 t~~Wt~i~~~~~lP~~R~~hs~v~~-~-~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~ 242 (650)
+.+....- .. ...-.++... + ..+++.+|..+ +.+.+||..+.....+..... ...+........+++
T Consensus 293 ~~~~~~~~---~~--~~~v~~~~~s~~~~~l~~~~g~~d----g~i~v~~~~~~~~~~~~~~~~-h~~~v~~~~~s~dg~ 362 (401)
T 4aez_A 293 TGARVNTV---DA--GSQVTSLIWSPHSKEIMSTHGFPD----NNLSIWSYSSSGLTKQVDIPA-HDTRVLYSALSPDGR 362 (401)
T ss_dssp TCCEEEEE---EC--SSCEEEEEECSSSSEEEEEECTTT----CEEEEEEEETTEEEEEEEEEC-CSSCCCEEEECTTSS
T ss_pred CCCEEEEE---eC--CCcEEEEEECCCCCeEEEEeecCC----CcEEEEecCCccceeEEEecC-CCCCEEEEEECCCCC
Confidence 76543311 11 1111122222 2 34555545333 478889988877666542111 111222222233566
Q ss_pred EEEEeccCCCcccCeEEEEECCCCc
Q 006334 243 VYIIGGVGDKHYYNDIWILNVSTCS 267 (650)
Q Consensus 243 IyI~GG~~~~~~~~dv~~yD~~t~~ 267 (650)
+++.||.+ ..+.+||+.+.+
T Consensus 363 ~l~s~~~d-----g~i~iw~~~~~~ 382 (401)
T 4aez_A 363 ILSTAASD-----ENLKFWRVYDGD 382 (401)
T ss_dssp EEEEECTT-----SEEEEEECCC--
T ss_pred EEEEEeCC-----CcEEEEECCCCc
Confidence 77777653 368888887764
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=93.69 E-value=2.9 Score=47.93 Aligned_cols=210 Identities=9% Similarity=0.106 Sum_probs=106.5
Q ss_pred eEEEEECCCCcEEEeecCCCCC--CCCcceEEEEE-CCEEEEEcccCCCcCcCeEEEEECCC------CcEE---eeecC
Q 006334 54 DVLMLNLDTMVWSTLATTGQGP--GPRDSHSAILW-GHKMIVFGGTNGYKKVNDLHILDLES------KEWM---RPECR 121 (650)
Q Consensus 54 dv~~yD~~t~sW~~l~~~g~~P--~pR~~hsa~~~-~~~lyVfGG~~~~~~~ndv~~yD~~t------~~W~---~l~~~ 121 (650)
-+++||+.++++.......... ....-.++... ++.|+| |... ..+++||..+ ..+. .....
T Consensus 393 GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gT~~-----~Gl~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (758)
T 3ott_A 393 SINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWI-STCL-----GGIFVVDKHKLMQSTSGQYIAEQNYSVH 466 (758)
T ss_dssp EEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEE-EESS-----SCEEEEEHHHHHHCCSSEEECSEEECGG
T ss_pred cHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEE-EECC-----CceEEEccccccccCCcceecccccccc
Confidence 4888999988887764321100 01111222222 478887 3221 2478888653 2232 11111
Q ss_pred CCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee-cCEEEEEeccC
Q 006334 122 GAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI-ANRLFVYGGDC 200 (650)
Q Consensus 122 ~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~-~~~Iyv~GG~~ 200 (650)
..++. ..-.++....++.|+++||.. +-+++||+.+++++.+.. ..+.....-.++... ++.|++...
T Consensus 467 ~~l~~-~~i~~i~~d~~g~lWi~~~t~-------~Gl~~~d~~~~~~~~~~~-~~~~~~~~~~~i~~d~~g~lWigt~-- 535 (758)
T 3ott_A 467 NGLSG-MFINQIIPDNEGNVWVLLYNN-------KGIDKINPRTREVTKLFA-DELTGEKSPNYLLCDEDGLLWVGFH-- 535 (758)
T ss_dssp GTCSC-SCEEEEEECTTSCEEEEETTC-------SSEEEEETTTTEEEEECT-TTSCGGGCEEEEEECTTSCEEEEET--
T ss_pred ccccc-ceeeeEEEcCCCCEEEEccCC-------CCcEEEeCCCCceEEecC-CCcCCCcccceEEECCCCCEEEEec--
Confidence 11111 122334444467899876653 238899999998887531 111111111122221 467876432
Q ss_pred CCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCcEEEeecCCCCCCC
Q 006334 201 GDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLDTCGQQPQG 280 (650)
Q Consensus 201 ~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~~~~~~p~~ 280 (650)
+.+.+||+.+.++..+.. ..+|. ..-.+++..++.|++... .-+.+||+++.+..... ++..
T Consensus 536 -----~Gl~~~~~~~~~~~~~~~-~gl~~-~~i~~i~~~~g~lWi~t~-------~Gl~~~~~~~~~~~~~~----~~~~ 597 (758)
T 3ott_A 536 -----GGVMRINPKDESQQSISF-GSFSN-NEILSMTCVKNSIWVSTT-------NGLWIIDRKTMDARQQN----MTNK 597 (758)
T ss_dssp -----TEEEEECC--CCCCBCCC-CC----CCEEEEEEETTEEEEEES-------SCEEEEETTTCCEEEC------CCC
T ss_pred -----CceEEEecCCCceEEecc-cCCCc-cceEEEEECCCCEEEECC-------CCeEEEcCCCceeEEec----CCCC
Confidence 368999998887766531 12332 223334445678887642 45899999998877653 2223
Q ss_pred cceeEEEEE-CCeEEEEcCC
Q 006334 281 RFSHAAVVT-GSDIVIYGGC 299 (650)
Q Consensus 281 R~~hsav~~-~~~lyV~GG~ 299 (650)
.+. .++.. .+.-+.|||.
T Consensus 598 ~~~-~~~~~~~~G~l~fG~~ 616 (758)
T 3ott_A 598 RFT-SLLFDPKEDCVYLGGA 616 (758)
T ss_dssp CCS-EEEEETTTTEEEEECB
T ss_pred cee-eeEEECCCCcEEEecC
Confidence 333 33333 3455667764
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=93.63 E-value=2.4 Score=43.45 Aligned_cols=188 Identities=10% Similarity=0.018 Sum_probs=100.1
Q ss_pred EEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEcccCCCcCcCeEEEEECCCCcEE
Q 006334 39 AVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW--GHKMIVFGGTNGYKKVNDLHILDLESKEWM 116 (650)
Q Consensus 39 ~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~--~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~ 116 (650)
.+++.|+.+ ..+.+||..+........... ....-.++.+. ++.+++.|+.+ ..+..+|+.+....
T Consensus 87 ~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~ 154 (383)
T 3ei3_B 87 TTVAVGSKG-----GDIILWDYDVQNKTSFIQGMG--PGDAITGMKFNQFNTNQLFVSSIR-----GATTLRDFSGSVIQ 154 (383)
T ss_dssp TEEEEEEBT-----SCEEEEETTSTTCEEEECCCS--TTCBEEEEEEETTEEEEEEEEETT-----TEEEEEETTSCEEE
T ss_pred CEEEEEcCC-----CeEEEEeCCCcccceeeecCC--cCCceeEEEeCCCCCCEEEEEeCC-----CEEEEEECCCCceE
Confidence 577777753 368899998877665433200 11222233343 34677777654 36788899877665
Q ss_pred eeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee-cCE-EE
Q 006334 117 RPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI-ANR-LF 194 (650)
Q Consensus 117 ~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~-~~~-Iy 194 (650)
.+... ......-.++....++.+++.|+.+ ..+.+||+.......+. .. ...-.++... ++. ++
T Consensus 155 ~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d-------~~i~i~d~~~~~~~~~~---~h--~~~v~~~~~~~~~~~~l 220 (383)
T 3ei3_B 155 VFAKT--DSWDYWYCCVDVSVSRQMLATGDST-------GRLLLLGLDGHEIFKEK---LH--KAKVTHAEFNPRCDWLM 220 (383)
T ss_dssp EEECC--CCSSCCEEEEEEETTTTEEEEEETT-------SEEEEEETTSCEEEEEE---CS--SSCEEEEEECSSCTTEE
T ss_pred EEecc--CCCCCCeEEEEECCCCCEEEEECCC-------CCEEEEECCCCEEEEec---cC--CCcEEEEEECCCCCCEE
Confidence 54221 1111223344455567777877763 36888898544333222 10 1111122222 244 77
Q ss_pred EEeccCCCCccCeEEEEECCC----CcEEEeeecCCCCCcccceEEEEE--CCEEEEEeccCCCcccCeEEEEECCCCc
Q 006334 195 VYGGDCGDQYHGDIDMLDMNS----LTWSRLAIIGSSPGVRAGHAAINI--GTKVYIIGGVGDKHYYNDIWILNVSTCS 267 (650)
Q Consensus 195 v~GG~~~~~~~n~v~~yd~~t----~~W~~i~~~g~~P~~R~~~s~v~~--~~~IyI~GG~~~~~~~~dv~~yD~~t~~ 267 (650)
+.|+.+ ..+..||+.+ ........ ....-.+++.. ++++++.|+.+ ..+.+||+.+..
T Consensus 221 ~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~~l~~~~~d-----~~i~iwd~~~~~ 284 (383)
T 3ei3_B 221 ATSSVD-----ATVKLWDLRNIKDKNSYIAEMP-----HEKPVNAAYFNPTDSTKLLTTDQR-----NEIRVYSSYDWS 284 (383)
T ss_dssp EEEETT-----SEEEEEEGGGCCSTTCEEEEEE-----CSSCEEEEEECTTTSCEEEEEESS-----SEEEEEETTBTT
T ss_pred EEEeCC-----CEEEEEeCCCCCcccceEEEec-----CCCceEEEEEcCCCCCEEEEEcCC-----CcEEEEECCCCc
Confidence 777755 4788899876 33332221 11111222222 45677777653 468889987643
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=93.59 E-value=5.2 Score=39.38 Aligned_cols=192 Identities=8% Similarity=0.024 Sum_probs=99.3
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCC-CCCCCCcceEEEEECCEEEEE----cccCC--------CcCcC
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTG-QGPGPRDSHSAILWGHKMIVF----GGTNG--------YKKVN 103 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g-~~P~pR~~hsa~~~~~~lyVf----GG~~~--------~~~~n 103 (650)
++.||+.... ...+++||+.+++...+.... ..+..+....++.-++++|+. |.... .....
T Consensus 79 dg~l~v~~~~-----~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~ 153 (296)
T 3e5z_A 79 QGHLIACSHG-----LRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGR 153 (296)
T ss_dssp TCCEEEEETT-----TTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSC
T ss_pred CCcEEEEecC-----CCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCc
Confidence 4667665421 246999999888877653221 111112222333336788886 54211 11135
Q ss_pred eEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecC-CCce-eeccccCCCCCCC
Q 006334 104 DLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLK-TMRW-ASPAVKGDIPVPR 181 (650)
Q Consensus 104 dv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~-t~~W-t~i~~~~~lP~~R 181 (650)
.+|+||+. .+...+.. .. ..-.+++...++++++.... .+.+++||+. +.+. ...... ......
T Consensus 154 ~l~~~~~~-g~~~~~~~--~~---~~~~gi~~s~dg~~lv~~~~-------~~~i~~~~~~~~g~~~~~~~~~-~~~~~~ 219 (296)
T 3e5z_A 154 WVFRLAPD-GTLSAPIR--DR---VKPNGLAFLPSGNLLVSDTG-------DNATHRYCLNARGETEYQGVHF-TVEPGK 219 (296)
T ss_dssp EEEEECTT-SCEEEEEC--CC---SSEEEEEECTTSCEEEEETT-------TTEEEEEEECSSSCEEEEEEEE-CCSSSC
T ss_pred EEEEECCC-CCEEEeec--CC---CCCccEEECCCCCEEEEeCC-------CCeEEEEEECCCCcCcCCCeEe-eCCCCC
Confidence 79999987 55554421 11 11234444456776644332 1468899986 4555 221111 111111
Q ss_pred CcceeeeecCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEE--C-CEEEEEeccCCCcccCeE
Q 006334 182 DSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINI--G-TKVYIIGGVGDKHYYNDI 258 (650)
Q Consensus 182 ~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~--~-~~IyI~GG~~~~~~~~dv 258 (650)
....+..-++.||+..+ +.+.+||+.......+.. +.. -.+++.. + +.||+... ..+
T Consensus 220 p~~i~~d~~G~l~v~~~-------~~v~~~~~~g~~~~~~~~----~~~--~~~~~f~~~d~~~L~v~t~-------~~l 279 (296)
T 3e5z_A 220 TDGLRVDAGGLIWASAG-------DGVHVLTPDGDELGRVLT----PQT--TSNLCFGGPEGRTLYMTVS-------TEF 279 (296)
T ss_dssp CCSEEEBTTSCEEEEET-------TEEEEECTTSCEEEEEEC----SSC--CCEEEEESTTSCEEEEEET-------TEE
T ss_pred CCeEEECCCCCEEEEcC-------CeEEEECCCCCEEEEEEC----CCC--ceeEEEECCCCCEEEEEcC-------CeE
Confidence 11122223577888762 579999998665555542 222 1222221 2 25777642 379
Q ss_pred EEEECCCCc
Q 006334 259 WILNVSTCS 267 (650)
Q Consensus 259 ~~yD~~t~~ 267 (650)
|+|+++++.
T Consensus 280 ~~~~~~~~~ 288 (296)
T 3e5z_A 280 WSIETNVRG 288 (296)
T ss_dssp EEEECSCCB
T ss_pred EEEEccccc
Confidence 999998774
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=93.55 E-value=3.5 Score=46.75 Aligned_cols=257 Identities=12% Similarity=0.066 Sum_probs=130.6
Q ss_pred ECCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCC-CCCcc-eE-EEEECCEEEEEcccCCCcCcCeEEEEECCC
Q 006334 36 SHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGP-GPRDS-HS-AILWGHKMIVFGGTNGYKKVNDLHILDLES 112 (650)
Q Consensus 36 ~~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P-~pR~~-hs-a~~~~~~lyVfGG~~~~~~~ndv~~yD~~t 112 (650)
.++++|.+--. .......+|+.+.....|+.+....... ..... .+ ...-+++.++|.-..+.....+++++|+.+
T Consensus 78 dG~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t 156 (695)
T 2bkl_A 78 RNGRFFYVRTH-KDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDS 156 (695)
T ss_dssp ETTEEEEEEEC-TTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTT
T ss_pred ECCEEEEEEEc-CCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCC
Confidence 34565554322 2233567899998888888775421100 00111 11 222367766665443333346899999999
Q ss_pred CcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCC------CcccceEEEEecCCCcee--eccccCCCCC-CCCc
Q 006334 113 KEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGE------ANYLNDLHVLDLKTMRWA--SPAVKGDIPV-PRDS 183 (650)
Q Consensus 113 ~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~------~~~~~dv~~yd~~t~~Wt--~i~~~~~lP~-~R~~ 183 (650)
++.... ...+.... ...+...+++.++++..+... ......++++++.+..-. .+. ..+. +...
T Consensus 157 g~~~~~---~~~~~~~~-~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~---~~~~~~~~~ 229 (695)
T 2bkl_A 157 GEWSKV---DVIEGGKY-ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVH---ERTGDPTTF 229 (695)
T ss_dssp CCBCSS---CCBSCCTT-CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEE---CCCCCTTCE
T ss_pred CCCcCC---cccCcccc-cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEE---ecCCCCEEE
Confidence 886411 11111111 334444567777776653210 123567999998876532 221 1111 1122
Q ss_pred ceeeee-cCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEE
Q 006334 184 HSSNVI-ANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILN 262 (650)
Q Consensus 184 hs~v~~-~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD 262 (650)
...... +++.+++...... ..+++|.+|..+..|..+.... . . ....+..++.+|+.... ......|+.+|
T Consensus 230 ~~~~~SpDG~~l~~~~~~~~-~~~~l~~~~~~~~~~~~l~~~~---~-~-~~~~~~~~g~l~~~s~~--~~~~~~l~~~d 301 (695)
T 2bkl_A 230 LQSDLSRDGKYLFVYILRGW-SENDVYWKRPGEKDFRLLVKGV---G-A-KYEVHAWKDRFYVLTDE--GAPRQRVFEVD 301 (695)
T ss_dssp EEEEECTTSCCEEEEEEETT-TEEEEEEECTTCSSCEEEEECS---S-C-CEEEEEETTEEEEEECT--TCTTCEEEEEB
T ss_pred EEEEECCCCCEEEEEEeCCC-CceEEEEEcCCCCceEEeecCC---C-c-eEEEEecCCcEEEEECC--CCCCCEEEEEe
Confidence 222222 3444444432221 3468888888777888887321 1 1 12223356665555332 22346899999
Q ss_pred CCCCc---EEEeecCCCCCCCcceeEEEEECCeEEEEcCCCCCCCCCCcEEEEecC
Q 006334 263 VSTCS---WSQLDTCGQQPQGRFSHAAVVTGSDIVIYGGCGEDERPLNELLVLQLG 315 (650)
Q Consensus 263 ~~t~~---W~~l~~~~~~p~~R~~hsav~~~~~lyV~GG~~~~~~~~~d~~~l~l~ 315 (650)
+.+.. |..+... .+. ..-....+.++.|++....+. ...++++++.
T Consensus 302 ~~~~~~~~~~~l~~~--~~~-~~l~~~~~~~~~lv~~~~~dg----~~~l~~~~~~ 350 (695)
T 2bkl_A 302 PAKPARASWKEIVPE--DSS-ASLLSVSIVGGHLSLEYLKDA----TSEVRVATLK 350 (695)
T ss_dssp TTBCSGGGCEEEECC--CSS-CEEEEEEEETTEEEEEEEETT----EEEEEEEETT
T ss_pred CCCCCccCCeEEecC--CCC-CeEEEEEEECCEEEEEEEECC----EEEEEEEeCC
Confidence 98765 8877532 111 111233344777777654321 2456666653
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.55 E-value=2.8 Score=43.09 Aligned_cols=193 Identities=12% Similarity=0.106 Sum_probs=92.5
Q ss_pred EECCEEEEEccCCCCcccceEEEEECCCCcEEEee---cCCCCCCCCcceEEEEE-CCEEEEEcccCCCcCcCeEEEEEC
Q 006334 35 YSHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLA---TTGQGPGPRDSHSAILW-GHKMIVFGGTNGYKKVNDLHILDL 110 (650)
Q Consensus 35 ~~~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~---~~g~~P~pR~~hsa~~~-~~~lyVfGG~~~~~~~ndv~~yD~ 110 (650)
...+..++.|+.+ ..+.+||+.++.-.... ..+. ...-.++++. +++.++.|+.++ .+.++|+
T Consensus 90 ~s~d~~l~~~s~d-----g~v~lWd~~~~~~~~~~~~~~~~H---~~~V~~v~~spdg~~l~sgs~d~-----~i~iwd~ 156 (344)
T 4gqb_B 90 WVGERGILVASDS-----GAVELWELDENETLIVSKFCKYEH---DDIVSTVSVLSSGTQAVSGSKDI-----CIKVWDL 156 (344)
T ss_dssp EETTTEEEEEETT-----SEEEEEEECTTSSCEEEEEEEECC---SSCEEEEEECTTSSEEEEEETTS-----CEEEEET
T ss_pred EeCCCeEEEEECC-----CEEEEEeccCCCceeEeeccccCC---CCCEEEEEECCCCCEEEEEeCCC-----eEEEEEC
Confidence 4444445556543 35788888766422111 1111 0111222332 677778787654 5788898
Q ss_pred CCCcEEeeecCCCCCCCCcccEEEEEcCC-EEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcc-eeee
Q 006334 111 ESKEWMRPECRGAPPSPRESHTATLVGDD-KMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSH-SSNV 188 (650)
Q Consensus 111 ~t~~W~~l~~~~~~P~~R~~hs~~~~~~~-~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~h-s~v~ 188 (650)
.+.+-...- .+ . ...-.++....++ .+++.|+.+ +.+.+||+.+.+-...- ......... +++.
T Consensus 157 ~~~~~~~~~-~~-h--~~~V~~~~~~~~~~~~l~s~s~D-------~~v~iwd~~~~~~~~~~---~~~~~~~~~~~~~~ 222 (344)
T 4gqb_B 157 AQQVVLSSY-RA-H--AAQVTCVAASPHKDSVFLSCSED-------NRILLWDTRCPKPASQI---GCSAPGYLPTSLAW 222 (344)
T ss_dssp TTTEEEEEE-CC-C--SSCEEEEEECSSCTTEEEEEETT-------SCEEEEETTSSSCEEEC---C----CCCEEEEEE
T ss_pred CCCcEEEEE-cC-c--CCceEEEEecCCCCCceeeeccc-------cccccccccccceeeee---ecceeeccceeeee
Confidence 887543320 10 0 1111222222333 577777763 24788898776543211 111111111 2222
Q ss_pred e--cCEEEEEeccCCCCccCeEEEEECCCCcE-EEeeecCCCCCcccceEEEEE--CC-EEEEEeccCCCcccCeEEEEE
Q 006334 189 I--ANRLFVYGGDCGDQYHGDIDMLDMNSLTW-SRLAIIGSSPGVRAGHAAINI--GT-KVYIIGGVGDKHYYNDIWILN 262 (650)
Q Consensus 189 ~--~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W-~~i~~~g~~P~~R~~~s~v~~--~~-~IyI~GG~~~~~~~~dv~~yD 262 (650)
. ++.+++.|+.+ ..+.+||+.+.+- ..+.. ......++.+ ++ ++++.|+.++ .+.+||
T Consensus 223 ~p~~~~~l~sg~~d-----g~v~~wd~~~~~~~~~~~~------h~~~v~~v~fsp~g~~~lasgs~D~-----~i~vwd 286 (344)
T 4gqb_B 223 HPQQSEVFVFGDEN-----GTVSLVDTKSTSCVLSSAV------HSQCVTGLVFSPHSVPFLASLSEDC-----SLAVLD 286 (344)
T ss_dssp CSSCTTEEEEEETT-----SEEEEEESCC--CCEEEEC------CSSCEEEEEECSSSSCCEEEEETTS-----CEEEEC
T ss_pred cCCCCcceEEeccC-----CcEEEEECCCCcEEEEEcC------CCCCEEEEEEccCCCeEEEEEeCCC-----eEEEEE
Confidence 2 45677887755 3688899876532 11210 0111222232 23 5666666543 588889
Q ss_pred CCCCcEEE
Q 006334 263 VSTCSWSQ 270 (650)
Q Consensus 263 ~~t~~W~~ 270 (650)
..+.+-..
T Consensus 287 ~~~~~~~~ 294 (344)
T 4gqb_B 287 SSLSELFR 294 (344)
T ss_dssp TTCCEEEE
T ss_pred CCCCcEEE
Confidence 88775433
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=93.52 E-value=5.8 Score=39.17 Aligned_cols=162 Identities=6% Similarity=0.019 Sum_probs=76.1
Q ss_pred CEEEEEcccCCCcCcCeEEEEECCC-CcEEeee--cCCCCCCCCcccEEEEEcCCE-EEEEccccCCCCcccceEEEEec
Q 006334 88 HKMIVFGGTNGYKKVNDLHILDLES-KEWMRPE--CRGAPPSPRESHTATLVGDDK-MVIFGGSGEGEANYLNDLHVLDL 163 (650)
Q Consensus 88 ~~lyVfGG~~~~~~~ndv~~yD~~t-~~W~~l~--~~~~~P~~R~~hs~~~~~~~~-Lyv~GG~~~~~~~~~~dv~~yd~ 163 (650)
+.||+.+.. ...+++||+.+ .++..+. .. ..+....-..++...+++ ||+.+..+ +.+.+||+
T Consensus 141 ~~l~~~~~~-----~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~pdg~~l~~~~~~~-------~~i~~~~~ 207 (343)
T 1ri6_A 141 RTLWVPALK-----QDRICLFTVSDDGHLVAQDPAEV-TTVEGAGPRHMVFHPNEQYAYCVNELN-------SSVDVWEL 207 (343)
T ss_dssp SEEEEEEGG-----GTEEEEEEECTTSCEEEEEEEEE-ECSTTCCEEEEEECTTSSEEEEEETTT-------TEEEEEES
T ss_pred CEEEEecCC-----CCEEEEEEecCCCceeeeccccc-ccCCCCCcceEEECCCCCEEEEEeCCC-------CEEEEEEe
Confidence 457665422 24689999887 6665321 10 111111112233344554 66654331 35788887
Q ss_pred C--CCceeeccccCCCCCC---CCcc-eeeee--cCEEEEEeccCCCCccCeEEEEECC--CCcEEEeeecCCCCCcccc
Q 006334 164 K--TMRWASPAVKGDIPVP---RDSH-SSNVI--ANRLFVYGGDCGDQYHGDIDMLDMN--SLTWSRLAIIGSSPGVRAG 233 (650)
Q Consensus 164 ~--t~~Wt~i~~~~~lP~~---R~~h-s~v~~--~~~Iyv~GG~~~~~~~n~v~~yd~~--t~~W~~i~~~g~~P~~R~~ 233 (650)
+ +..+..+.....++.. .... .++.. +..||+.+..+ +.+.+||+. +.++..+...... ..-
T Consensus 208 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~-----~~i~v~d~~~~~~~~~~~~~~~~~---~~~ 279 (343)
T 1ri6_A 208 KDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTA-----SLITVFSVSEDGSVLSKEGFQPTE---TQP 279 (343)
T ss_dssp SCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTT-----TEEEEEEECTTSCCEEEEEEEECS---SSC
T ss_pred cCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCC-----CEEEEEEEcCCCCceEEeeeecCC---Ccc
Confidence 4 3444332211122221 1111 22222 23566655332 478888877 5566666532111 111
Q ss_pred eEEEE-ECC-EEEEEeccCCCcccCeEEEEECCCCcEEEeec
Q 006334 234 HAAIN-IGT-KVYIIGGVGDKHYYNDIWILNVSTCSWSQLDT 273 (650)
Q Consensus 234 ~s~v~-~~~-~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~~ 273 (650)
..++. -++ .||+.++.++ .-.+|.+|.++.+++.+..
T Consensus 280 ~~~~~s~dg~~l~~~~~~~~---~v~v~~~d~~~g~~~~~~~ 318 (343)
T 1ri6_A 280 RGFNVDHSGKYLIAAGQKSH---HISVYEIVGEQGLLHEKGR 318 (343)
T ss_dssp CCEEECTTSSEEEEECTTTC---EEEEEEEETTTTEEEEEEE
T ss_pred ceEEECCCCCEEEEecCCCC---eEEEEEEcCCCceeeEccc
Confidence 12222 234 4555543221 1235566888888887754
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=93.51 E-value=6.3 Score=45.02 Aligned_cols=258 Identities=11% Similarity=0.121 Sum_probs=126.1
Q ss_pred ECCEEEEEccCCCCcccceEEEEECC---CCcEEEeecCCCCCC-CCcc-eEEEE-ECCEEEEEcccCCCcCcCeEEEEE
Q 006334 36 SHGAVYIFGGCCGGLHFGDVLMLNLD---TMVWSTLATTGQGPG-PRDS-HSAIL-WGHKMIVFGGTNGYKKVNDLHILD 109 (650)
Q Consensus 36 ~~~~IyvfGG~~~~~~~~dv~~yD~~---t~sW~~l~~~g~~P~-pR~~-hsa~~-~~~~lyVfGG~~~~~~~ndv~~yD 109 (650)
.++++|.+-- ........+|+.+.. ...|+.+........ .... .+... -+++.++|+...+......++++|
T Consensus 117 dG~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d 195 (741)
T 1yr2_A 117 RGASVFYSWN-SGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVG 195 (741)
T ss_dssp ETTEEEEEEE-CSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEE
T ss_pred ECCEEEEEEE-cCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence 3455554432 222335788999987 677877633211100 0011 11222 267766666543333335799999
Q ss_pred CCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCC-------CCcccceEEEEecCCCceeeccccCCCCCCCC
Q 006334 110 LESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEG-------EANYLNDLHVLDLKTMRWASPAVKGDIPVPRD 182 (650)
Q Consensus 110 ~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~-------~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~ 182 (650)
+.++++...... ... ....+...+ +.++++..+.. .......++++++.+..-...........+..
T Consensus 196 l~tg~~~~~~~~----~~~-~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~ 269 (741)
T 1yr2_A 196 VADGKPLADELK----WVK-FSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKR 269 (741)
T ss_dssp TTTCCEEEEEEE----EEE-SCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTC
T ss_pred CCCCCCCCccCC----Cce-eccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeE
Confidence 999988653111 111 112223334 44444443221 11124568888887654211100011111112
Q ss_pred cceeee-ecCEEEEEeccCCCCccCeEEEEECCCC--c-EEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeE
Q 006334 183 SHSSNV-IANRLFVYGGDCGDQYHGDIDMLDMNSL--T-WSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDI 258 (650)
Q Consensus 183 ~hs~v~-~~~~Iyv~GG~~~~~~~n~v~~yd~~t~--~-W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv 258 (650)
...... -+++.+++.........++++.+|+.+. . |..+... ...... .....++.||+.... ......|
T Consensus 270 ~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~---~~~~~~-~~~~dg~~l~~~s~~--~~~~~~l 343 (741)
T 1yr2_A 270 GHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPD---LKAQWD-FVDGVGDQLWFVSGD--GAPLKKI 343 (741)
T ss_dssp EEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECS---SSSCEE-EEEEETTEEEEEECT--TCTTCEE
T ss_pred EEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCC---CCceEE-EEeccCCEEEEEECC--CCCCCEE
Confidence 222222 2454444444333224578999999877 6 8887621 111221 222456677777433 2234679
Q ss_pred EEEECCC--CcEEEeecCCCCCCCcceeEEEEECCeEEEEcCCCCCCCCCCcEEEEec
Q 006334 259 WILNVST--CSWSQLDTCGQQPQGRFSHAAVVTGSDIVIYGGCGEDERPLNELLVLQL 314 (650)
Q Consensus 259 ~~yD~~t--~~W~~l~~~~~~p~~R~~hsav~~~~~lyV~GG~~~~~~~~~d~~~l~l 314 (650)
+.+|+.+ ..|..+-... . ... ......++.|++....+ ....++++++
T Consensus 344 ~~~d~~~~~~~~~~l~~~~--~-~~l-~~~~~~~~~lv~~~~~d----g~~~l~~~~~ 393 (741)
T 1yr2_A 344 VRVDLSGSTPRFDTVVPES--K-DNL-ESVGIAGNRLFASYIHD----AKSQVLAFDL 393 (741)
T ss_dssp EEEECSSSSCEEEEEECCC--S-SEE-EEEEEEBTEEEEEEEET----TEEEEEEEET
T ss_pred EEEeCCCCccccEEEecCC--C-CeE-EEEEEECCEEEEEEEEC----CEEEEEEEeC
Confidence 9999988 5798875321 1 111 12333466776664322 1245666665
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=93.46 E-value=3.9 Score=45.15 Aligned_cols=236 Identities=15% Similarity=0.166 Sum_probs=110.2
Q ss_pred ceEEEEEC--CCCcEEEeecCCCCCCCCcceEEEEE-----CCEEEEEcccCCCcCcCeEEEEECCCCcEEe-eecCCC-
Q 006334 53 GDVLMLNL--DTMVWSTLATTGQGPGPRDSHSAILW-----GHKMIVFGGTNGYKKVNDLHILDLESKEWMR-PECRGA- 123 (650)
Q Consensus 53 ~dv~~yD~--~t~sW~~l~~~g~~P~pR~~hsa~~~-----~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~-l~~~~~- 123 (650)
+.+.+||+ .+.+-...-.. ...-..+++. +++.++++.+. .+.+.++|..+.+-.. +...+.
T Consensus 200 ~~V~v~D~~~~t~~~~~~i~~-----g~~p~~va~sp~~~~dg~~l~v~~~~----~~~v~v~D~~t~~~~~~i~~~g~~ 270 (543)
T 1nir_A 200 ARIDMIDLWAKEPTKVAEIKI-----GIEARSVESSKFKGYEDRYTIAGAYW----PPQFAIMDGETLEPKQIVSTRGMT 270 (543)
T ss_dssp SEEEEEETTSSSCEEEEEEEC-----CSEEEEEEECCSTTCTTTEEEEEEEE----SSEEEEEETTTCCEEEEEECCEEC
T ss_pred CeEEEEECcCCCCcEEEEEec-----CCCcceEEeCCCcCCCCCEEEEEEcc----CCeEEEEeccccccceeecccCcc
Confidence 67999999 55543221111 1222333343 45444444332 2567888988876433 221110
Q ss_pred ------CCCCCcccEEEEEcC-CEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee-cCE-EE
Q 006334 124 ------PPSPRESHTATLVGD-DKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI-ANR-LF 194 (650)
Q Consensus 124 ------~P~~R~~hs~~~~~~-~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~-~~~-Iy 194 (650)
.+.+|. .+++...+ ..+|+. ... .+.++.+|..+.+-..+. .++..+.-+.++.. +++ +|
T Consensus 271 ~~~~~~~~~~~v-~~i~~s~~~~~~~vs-~~~------~g~i~vvd~~~~~~l~~~---~i~~~~~~~~~~~spdg~~l~ 339 (543)
T 1nir_A 271 VDTQTYHPEPRV-AAIIASHEHPEFIVN-VKE------TGKVLLVNYKDIDNLTVT---SIGAAPFLHDGGWDSSHRYFM 339 (543)
T ss_dssp SSSCCEESCCCE-EEEEECSSSSEEEEE-ETT------TTEEEEEECTTSSSCEEE---EEECCSSCCCEEECTTSCEEE
T ss_pred cCccccccCCce-EEEEECCCCCEEEEE-ECC------CCeEEEEEecCCCcceeE---EeccCcCccCceECCCCCEEE
Confidence 122222 22222333 444443 332 246889998764322111 11122333333333 344 55
Q ss_pred EEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEEC-CEEEEEeccCCCcccCeEEEEECCCC-----cE
Q 006334 195 VYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIG-TKVYIIGGVGDKHYYNDIWILNVSTC-----SW 268 (650)
Q Consensus 195 v~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~-~~IyI~GG~~~~~~~~dv~~yD~~t~-----~W 268 (650)
+.+.. .+.+.++|..+.+-...-..+..|.+-.+.....-+ +.+|+.+...+ +.|-++|+.+. .|
T Consensus 340 va~~~-----~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d----~~V~v~d~~~~~~~~~~~ 410 (543)
T 1nir_A 340 TAANN-----SNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGD----GSISLIGTDPKNHPQYAW 410 (543)
T ss_dssp EEEGG-----GTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSS----SEEEEEECCTTTCTTTBT
T ss_pred EEecC-----CCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCC----ceEEEEEeCCCCCchhcC
Confidence 54332 257889999988765543333344432333332223 57777764332 36888888762 27
Q ss_pred EEeecCCCCCCCcceeEEEEE-CC-eEEEEcCCCCCCCCCCcEEEEecCCCCC
Q 006334 269 SQLDTCGQQPQGRFSHAAVVT-GS-DIVIYGGCGEDERPLNELLVLQLGAEHP 319 (650)
Q Consensus 269 ~~l~~~~~~p~~R~~hsav~~-~~-~lyV~GG~~~~~~~~~d~~~l~l~~~~~ 319 (650)
+.+....-.. .....+... ++ .||+-.=.+.+....+.+.++|+.....
T Consensus 411 ~~v~~l~~~g--~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~ 461 (543)
T 1nir_A 411 KKVAELQGQG--GGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDA 461 (543)
T ss_dssp SEEEEEECSC--SCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTS
T ss_pred eEEEEEEcCC--CCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCC
Confidence 7665421111 111122233 33 4554321111111245788898875543
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=93.38 E-value=7.5 Score=39.32 Aligned_cols=206 Identities=9% Similarity=-0.014 Sum_probs=102.2
Q ss_pred eeEEEEEC--CEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEE
Q 006334 30 GHSACYSH--GAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHI 107 (650)
Q Consensus 30 ghs~v~~~--~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~ 107 (650)
+-..+... +.+|+.+-. ...+++||+.++....+.. + ......+..-++++|+... +.+++
T Consensus 51 ~egp~~~~~~~~l~~~d~~-----~~~i~~~d~~~~~~~~~~~----~-~~v~~i~~~~dg~l~v~~~-------~gl~~ 113 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNIL-----ERELHELHLASGRKTVHAL----P-FMGSALAKISDSKQLIASD-------DGLFL 113 (326)
T ss_dssp EEEEEEETTTTEEEEEEGG-----GTEEEEEETTTTEEEEEEC----S-SCEEEEEEEETTEEEEEET-------TEEEE
T ss_pred CcCCeEeCCCCEEEEEECC-----CCEEEEEECCCCcEEEEEC----C-CcceEEEEeCCCeEEEEEC-------CCEEE
Confidence 34444443 678877643 2479999999887655432 1 1122222334788887541 35999
Q ss_pred EECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceee
Q 006334 108 LDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSN 187 (650)
Q Consensus 108 yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v 187 (650)
||+.+.+++.+..............+++..++++|+. ............+|+|| +.+...+.. ... .....+
T Consensus 114 ~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~-~~~~~~~~~~~~l~~~~--~g~~~~~~~--~~~---~~~~i~ 185 (326)
T 2ghs_A 114 RDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIG-TMGRKAETGAGSIYHVA--KGKVTKLFA--DIS---IPNSIC 185 (326)
T ss_dssp EETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEE-EEETTCCTTCEEEEEEE--TTEEEEEEE--EES---SEEEEE
T ss_pred EECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEE-eCCCcCCCCceEEEEEe--CCcEEEeeC--CCc---ccCCeE
Confidence 9999988876522111011111233444456777763 32111112245788998 455554321 110 111222
Q ss_pred ee-cC-EEEEEeccCCCCccCeEEEEECC--CC-cEE---EeeecCCCCCcccceEEEEE-CCEEEEEeccCCCcccCeE
Q 006334 188 VI-AN-RLFVYGGDCGDQYHGDIDMLDMN--SL-TWS---RLAIIGSSPGVRAGHAAINI-GTKVYIIGGVGDKHYYNDI 258 (650)
Q Consensus 188 ~~-~~-~Iyv~GG~~~~~~~n~v~~yd~~--t~-~W~---~i~~~g~~P~~R~~~s~v~~-~~~IyI~GG~~~~~~~~dv 258 (650)
.. ++ .+|+.... .+.+++||.. +. ... .+..... ....-..++.. ++.||+..-. ...+
T Consensus 186 ~s~dg~~lyv~~~~-----~~~I~~~d~~~~~Gl~~~~~~~~~~~~~--~~~~p~gi~~d~~G~lwva~~~-----~~~v 253 (326)
T 2ghs_A 186 FSPDGTTGYFVDTK-----VNRLMRVPLDARTGLPTGKAEVFIDSTG--IKGGMDGSVCDAEGHIWNARWG-----EGAV 253 (326)
T ss_dssp ECTTSCEEEEEETT-----TCEEEEEEBCTTTCCBSSCCEEEEECTT--SSSEEEEEEECTTSCEEEEEET-----TTEE
T ss_pred EcCCCCEEEEEECC-----CCEEEEEEcccccCCcccCceEEEECCC--CCCCCCeeEECCCCCEEEEEeC-----CCEE
Confidence 22 33 57776432 2579999975 44 211 1111100 00111223332 3577776311 1469
Q ss_pred EEEECCCCcEEEee
Q 006334 259 WILNVSTCSWSQLD 272 (650)
Q Consensus 259 ~~yD~~t~~W~~l~ 272 (650)
++||+....-..+.
T Consensus 254 ~~~d~~g~~~~~i~ 267 (326)
T 2ghs_A 254 DRYDTDGNHIARYE 267 (326)
T ss_dssp EEECTTCCEEEEEE
T ss_pred EEECCCCCEEEEEE
Confidence 99999655444443
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=93.18 E-value=7.3 Score=38.63 Aligned_cols=192 Identities=11% Similarity=0.017 Sum_probs=94.0
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEECCCCcEE
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESKEWM 116 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~ 116 (650)
++.+++.|+.+ ..+.++|..+........... ..........++++++.|+.+ ..+.++|..+.+-.
T Consensus 24 ~~~~l~s~~~d-----g~v~lWd~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~s~s~d-----~~i~vwd~~~~~~~ 90 (304)
T 2ynn_A 24 TEPWVLTTLYS-----GRVELWNYETQVEVRSIQVTE---TPVRAGKFIARKNWIIVGSDD-----FRIRVFNYNTGEKV 90 (304)
T ss_dssp SSSEEEEEETT-----SEEEEEETTTTEEEEEEECCS---SCEEEEEEEGGGTEEEEEETT-----SEEEEEETTTCCEE
T ss_pred CCCEEEEEcCC-----CcEEEEECCCCceeEEeeccC---CcEEEEEEeCCCCEEEEECCC-----CEEEEEECCCCcEE
Confidence 45666667654 368888988775433222111 111122223356677777654 36788898877543
Q ss_pred eeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee--cCEEE
Q 006334 117 RPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI--ANRLF 194 (650)
Q Consensus 117 ~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~--~~~Iy 194 (650)
.. ..+ ....-.++....++.+++.|+.+ ..+.+||+.+.. ........ ....-.+++.. ++.++
T Consensus 91 ~~-~~~---h~~~v~~~~~~~~~~~l~sgs~D-------~~v~lWd~~~~~-~~~~~~~~--h~~~v~~v~~~p~~~~~l 156 (304)
T 2ynn_A 91 VD-FEA---HPDYIRSIAVHPTKPYVLSGSDD-------LTVKLWNWENNW-ALEQTFEG--HEHFVMCVAFNPKDPSTF 156 (304)
T ss_dssp EE-EEC---CSSCEEEEEECSSSSEEEEEETT-------SCEEEEEGGGTT-EEEEEECC--CCSCEEEEEECTTCTTEE
T ss_pred EE-EeC---CCCcEEEEEEcCCCCEEEEECCC-------CeEEEEECCCCc-chhhhhcc--cCCcEEEEEECCCCCCEE
Confidence 21 011 11122334444466777777763 247788876542 11110000 01111122222 34677
Q ss_pred EEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEE---CCEEEEEeccCCCcccCeEEEEECCCCcE
Q 006334 195 VYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINI---GTKVYIIGGVGDKHYYNDIWILNVSTCSW 268 (650)
Q Consensus 195 v~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~---~~~IyI~GG~~~~~~~~dv~~yD~~t~~W 268 (650)
+.|+.+ ..+..||+.+..-...... ...+....+... ++.+++.|+.+ ..+.+||+.+..-
T Consensus 157 ~sgs~D-----~~v~iwd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~s~s~D-----~~i~iWd~~~~~~ 220 (304)
T 2ynn_A 157 ASGCLD-----RTVKVWSLGQSTPNFTLTT---GQERGVNYVDYYPLPDKPYMITASDD-----LTIKIWDYQTKSC 220 (304)
T ss_dssp EEEETT-----SEEEEEETTCSSCSEEEEC---CCTTCEEEEEECCSTTCCEEEEEETT-----SEEEEEETTTTEE
T ss_pred EEEeCC-----CeEEEEECCCCCccceecc---CCcCcEEEEEEEEcCCCCEEEEEcCC-----CeEEEEeCCCCcc
Confidence 777765 4788888765431111100 011111111111 34566666643 3688899987653
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=93.18 E-value=7.5 Score=39.93 Aligned_cols=219 Identities=13% Similarity=0.031 Sum_probs=106.5
Q ss_pred ceEEEEECCCCcEEEeecCCCCCCCCcceEEE-EECCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCccc
Q 006334 53 GDVLMLNLDTMVWSTLATTGQGPGPRDSHSAI-LWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESH 131 (650)
Q Consensus 53 ~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~-~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h 131 (650)
..+++||..+... .... .........+ ..++++++.|+.++ .+.+||+.+..-... . ......-.
T Consensus 78 ~~v~i~d~~~~~~--~~~~---~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~--~--~~h~~~v~ 143 (420)
T 3vl1_A 78 GHDFLFNTIIRDG--SKML---KRADYTAVDTAKLQMRRFILGTTEG-----DIKVLDSNFNLQREI--D--QAHVSEIT 143 (420)
T ss_dssp TEEEEEECCSEET--TTTS---CSCCEEEEEEECSSSCEEEEEETTS-----CEEEECTTSCEEEEE--T--TSSSSCEE
T ss_pred CcEEEEEecccce--eeEE---ecCCceEEEEEecCCCEEEEEECCC-----CEEEEeCCCcceeee--c--ccccCccE
Confidence 3688888765421 1111 1111112212 23677888887643 578888887654442 0 11122233
Q ss_pred EEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee-cCEEEEEeccCCCCccCeEEE
Q 006334 132 TATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI-ANRLFVYGGDCGDQYHGDIDM 210 (650)
Q Consensus 132 s~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~-~~~Iyv~GG~~~~~~~n~v~~ 210 (650)
++....++.+++.|+.+ ..+.+||+.+.+-...- . . ....-.++... ++.+++.|+.+ ..+..
T Consensus 144 ~~~~~~~~~~l~s~s~d-------~~i~iwd~~~~~~~~~~-~-~--h~~~v~~~~~~~~~~~l~s~~~d-----~~v~i 207 (420)
T 3vl1_A 144 KLKFFPSGEALISSSQD-------MQLKIWSVKDGSNPRTL-I-G--HRATVTDIAIIDRGRNVLSASLD-----GTIRL 207 (420)
T ss_dssp EEEECTTSSEEEEEETT-------SEEEEEETTTCCCCEEE-E-C--CSSCEEEEEEETTTTEEEEEETT-----SCEEE
T ss_pred EEEECCCCCEEEEEeCC-------CeEEEEeCCCCcCceEE-c-C--CCCcEEEEEEcCCCCEEEEEcCC-----CcEEE
Confidence 44444466777777763 35888998765322110 0 0 01111122222 45666677755 36888
Q ss_pred EECCCCcEEEeeecCCCCCcccceEEEE----------------------ECCEEEEEeccCCCcccCeEEEEECCCCcE
Q 006334 211 LDMNSLTWSRLAIIGSSPGVRAGHAAIN----------------------IGTKVYIIGGVGDKHYYNDIWILNVSTCSW 268 (650)
Q Consensus 211 yd~~t~~W~~i~~~g~~P~~R~~~s~v~----------------------~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W 268 (650)
||+.+.+-...-.....+. ..-.+++. .++++++.|+.+ ..+.+||+.+..-
T Consensus 208 wd~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~~~~ 281 (420)
T 3vl1_A 208 WECGTGTTIHTFNRKENPH-DGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVS-----GVITVHNVFSKEQ 281 (420)
T ss_dssp EETTTTEEEEEECBTTBTT-CCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETT-----SCEEEEETTTCCE
T ss_pred eECCCCceeEEeecCCCCC-CCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCC-----CeEEEEECCCCce
Confidence 9988765333221100010 00111111 245677777654 3589999987764
Q ss_pred EEeecCCCCCCCcceeEEEEE-CCe-EEEEcCCCCCCCCCCcEEEEecCC
Q 006334 269 SQLDTCGQQPQGRFSHAAVVT-GSD-IVIYGGCGEDERPLNELLVLQLGA 316 (650)
Q Consensus 269 ~~l~~~~~~p~~R~~hsav~~-~~~-lyV~GG~~~~~~~~~d~~~l~l~~ 316 (650)
..... ......-.++++. ++. +++.|+.+ ..+.++++..
T Consensus 282 ~~~~~---~~~~~~v~~~~~~~~~~~~l~~g~~d------g~i~vwd~~~ 322 (420)
T 3vl1_A 282 TIQLP---SKFTCSCNSLTVDGNNANYIYAGYEN------GMLAQWDLRS 322 (420)
T ss_dssp EEEEC---CTTSSCEEEEEECSSCTTEEEEEETT------SEEEEEETTC
T ss_pred eEEcc---cccCCCceeEEEeCCCCCEEEEEeCC------CeEEEEEcCC
Confidence 33221 1111111223333 344 77777642 3577777753
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=93.16 E-value=8.1 Score=41.87 Aligned_cols=240 Identities=12% Similarity=0.056 Sum_probs=110.0
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCC------cEEEeecCCCCCCCCcceEEEE-ECCEEEEEcccCCCcCcCeEEEEE
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTM------VWSTLATTGQGPGPRDSHSAIL-WGHKMIVFGGTNGYKKVNDLHILD 109 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~------sW~~l~~~g~~P~pR~~hsa~~-~~~~lyVfGG~~~~~~~ndv~~yD 109 (650)
++.+++.|+.+ ..+.+||..+. ....+..... ....-.++++ .+++.++.+|.+.. ....++.+|
T Consensus 77 ~~~~l~s~~~d-----g~v~vw~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~-~~~~v~~~d 148 (615)
T 1pgu_A 77 GSQYLCSGDES-----GKVIVWGWTFDKESNSVEVNVKSEFQV--LAGPISDISWDFEGRRLCVVGEGRD-NFGVFISWD 148 (615)
T ss_dssp TCCEEEEEETT-----SEEEEEEEEEEGGGTEEEEEEEEEEEC--CSSCEEEEEECTTSSEEEEEECCSS-CSEEEEETT
T ss_pred CCCEEEEecCC-----CEEEEEeCCCCcccccccccccchhhc--ccccEEEEEEeCCCCEEEEeccCCC-CccEEEEEE
Confidence 45666666653 35777777543 2333222111 0111222233 25666666765332 234566666
Q ss_pred CCCCcEEeeecCCCCCCCCcccEEEEEcCCE-EEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCC-Ccceee
Q 006334 110 LESKEWMRPECRGAPPSPRESHTATLVGDDK-MVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPR-DSHSSN 187 (650)
Q Consensus 110 ~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~-Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R-~~hs~v 187 (650)
+.+-... .. .....-.++....++. +++.|+.+ ..+.+||..+.+-...- ....... .-.++.
T Consensus 149 --~~~~~~~-~~---~~~~~v~~~~~~~~~~~~l~~~~~d-------~~v~vwd~~~~~~~~~~--~~~~~~~~~v~~~~ 213 (615)
T 1pgu_A 149 --SGNSLGE-VS---GHSQRINACHLKQSRPMRSMTVGDD-------GSVVFYQGPPFKFSASD--RTHHKQGSFVRDVE 213 (615)
T ss_dssp --TCCEEEE-CC---SCSSCEEEEEECSSSSCEEEEEETT-------TEEEEEETTTBEEEEEE--CSSSCTTCCEEEEE
T ss_pred --CCCccee-ee---cCCccEEEEEECCCCCcEEEEEeCC-------CcEEEEeCCCcceeeee--cccCCCCceEEEEE
Confidence 3322211 01 1111223333334443 67777653 35888887765433211 0100000 112222
Q ss_pred ee-c-CEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCC
Q 006334 188 VI-A-NRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVST 265 (650)
Q Consensus 188 ~~-~-~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t 265 (650)
.. + +.+++.|+.+ ..+.+||+.+.+....-..........-.++...++.+++.|+.+ ..+.+||+.+
T Consensus 214 ~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d-----~~i~~wd~~~ 283 (615)
T 1pgu_A 214 FSPDSGEFVITVGSD-----RKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGAD-----ATIRVWDVTT 283 (615)
T ss_dssp ECSTTCCEEEEEETT-----CCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETT-----SEEEEEETTT
T ss_pred ECCCCCCEEEEEeCC-----CeEEEEECCCCCEeEEecccccccCCceEEEEEcCCCEEEEEcCC-----CcEEEEECCC
Confidence 22 4 5677777754 478999988776443220000011111122222266677777643 4689999987
Q ss_pred CcEEEeecCCCCCCCcceeEEEEECCeEEEEcCCCCCCCCCCcEEEEecC
Q 006334 266 CSWSQLDTCGQQPQGRFSHAAVVTGSDIVIYGGCGEDERPLNELLVLQLG 315 (650)
Q Consensus 266 ~~W~~l~~~~~~p~~R~~hsav~~~~~lyV~GG~~~~~~~~~d~~~l~l~ 315 (650)
.+....-.....+....-.+++..++..++.|+.+ ..+.++++.
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------g~i~~~d~~ 327 (615)
T 1pgu_A 284 SKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLD------GTLNFYELG 327 (615)
T ss_dssp TEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETT------SCEEEEETT
T ss_pred CcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECC------CCEEEEECC
Confidence 76544322111111112223333366667776642 345666654
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=93.05 E-value=0.55 Score=49.81 Aligned_cols=191 Identities=10% Similarity=0.089 Sum_probs=95.9
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCcEEEeec-CCCCCCCCcceEEEEE--CCEEEEEcccCCCcCcCeEEEEECCCC
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLAT-TGQGPGPRDSHSAILW--GHKMIVFGGTNGYKKVNDLHILDLESK 113 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~-~g~~P~pR~~hsa~~~--~~~lyVfGG~~~~~~~ndv~~yD~~t~ 113 (650)
++.+++.|+.++ .+.+||+.+.....+.. .+. ...-.++.+. ++.+++.|+.++ .+.++|+.++
T Consensus 131 ~~~~lasGs~dg-----~i~lWd~~~~~~~~~~~~~gH---~~~V~~l~f~p~~~~~l~s~s~D~-----~v~iwd~~~~ 197 (435)
T 4e54_B 131 HPSTVAVGSKGG-----DIMLWNFGIKDKPTFIKGIGA---GGSITGLKFNPLNTNQFYASSMEG-----TTRLQDFKGN 197 (435)
T ss_dssp CTTCEEEEETTS-----CEEEECSSCCSCCEEECCCSS---SCCCCEEEECSSCTTEEEEECSSS-----CEEEEETTSC
T ss_pred CCCEEEEEeCCC-----EEEEEECCCCCceeEEEccCC---CCCEEEEEEeCCCCCEEEEEeCCC-----EEEEeeccCC
Confidence 456777887544 58888887665433322 111 1111233332 566777777654 4777898877
Q ss_pred cEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee---c
Q 006334 114 EWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI---A 190 (650)
Q Consensus 114 ~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~---~ 190 (650)
....+.... .......++....++.+++.|+.+ ..+.+||+....-..+. .....-..+.+ +
T Consensus 198 ~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~g~~d-------g~i~~wd~~~~~~~~~~------~h~~~v~~v~~~p~~ 262 (435)
T 4e54_B 198 ILRVFASSD--TINIWFCSLDVSASSRMVVTGDNV-------GNVILLNMDGKELWNLR------MHKKKVTHVALNPCC 262 (435)
T ss_dssp EEEEEECCS--SCSCCCCCEEEETTTTEEEEECSS-------SBEEEEESSSCBCCCSB------CCSSCEEEEEECTTC
T ss_pred ceeEEeccC--CCCccEEEEEECCCCCEEEEEeCC-------CcEeeeccCcceeEEEe------cccceEEeeeecCCC
Confidence 655442211 112223344555577888888763 35788887654322211 11111122222 2
Q ss_pred CEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEE--CCEEEEEeccCCCcccCeEEEEECCCCc
Q 006334 191 NRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINI--GTKVYIIGGVGDKHYYNDIWILNVSTCS 267 (650)
Q Consensus 191 ~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~--~~~IyI~GG~~~~~~~~dv~~yD~~t~~ 267 (650)
+.+++.|+.++ .+.+||+.+..-..... ....-.....++.+ ++..++.|+.+ ..+.+||+.+..
T Consensus 263 ~~~~~s~s~d~-----~v~iwd~~~~~~~~~~~--~~~~h~~~v~~~~~spdg~~l~s~~~D-----~~i~iwd~~~~~ 329 (435)
T 4e54_B 263 DWFLATASVDQ-----TVKIWDLRQVRGKASFL--YSLPHRHPVNAACFSPDGARLLTTDQK-----SEIRVYSASQWD 329 (435)
T ss_dssp SSEEEEEETTS-----BCCEEETTTCCSSSCCS--BCCBCSSCEEECCBCTTSSEEEEEESS-----SCEEEEESSSSS
T ss_pred ceEEEEecCcc-----eeeEEecccccccceEE--EeeeccccccceeECCCCCeeEEEcCC-----CEEEEEECCCCc
Confidence 45677777553 56677876543111000 00000111122222 45666776654 358888887653
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=93.05 E-value=1.6 Score=44.73 Aligned_cols=217 Identities=13% Similarity=0.046 Sum_probs=105.0
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEECCCCcEE
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESKEWM 116 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~ 116 (650)
+++.++|...... ...+|++|+.+.....+... +.......+...+++.++|+..+ ..++.+|+.+.+-.
T Consensus 46 Dg~~l~~~~~~~g--~~~l~~~d~~~g~~~~lt~~---~~~~~~~~~~spdg~~l~~~~~~-----~~l~~~d~~~g~~~ 115 (388)
T 3pe7_A 46 DGSKLLFGGAFDG--PWNYYLLDLNTQVATQLTEG---RGDNTFGGFLSPDDDALFYVKDG-----RNLMRVDLATLEEN 115 (388)
T ss_dssp TSCEEEEEECTTS--SCEEEEEETTTCEEEECCCS---SCBCSSSCEECTTSSEEEEEETT-----TEEEEEETTTCCEE
T ss_pred CCCEEEEEEcCCC--CceEEEEeCCCCceEEeeeC---CCCCccceEEcCCCCEEEEEeCC-----CeEEEEECCCCcce
Confidence 3554455543111 23799999999887776543 11111122333456555555432 47999999988765
Q ss_pred eeecCCCCCCCCcccEE-EEEcCCEEEEEccccCC---------------CCcccceEEEEecCCCceeeccccCCCCCC
Q 006334 117 RPECRGAPPSPRESHTA-TLVGDDKMVIFGGSGEG---------------EANYLNDLHVLDLKTMRWASPAVKGDIPVP 180 (650)
Q Consensus 117 ~l~~~~~~P~~R~~hs~-~~~~~~~Lyv~GG~~~~---------------~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~ 180 (650)
.+. ..+........ +...++++++.--.... .......++++|+.+.+-..+... + .
T Consensus 116 ~~~---~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~---~-~ 188 (388)
T 3pe7_A 116 VVY---QVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQE---N-Q 188 (388)
T ss_dssp EEE---ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEE---S-S
T ss_pred eee---echhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecC---C-c
Confidence 542 12222111111 12234444331100000 011236799999988766554311 1 1
Q ss_pred CCcceeeee-cCEEEEEeccC-CCCccCeEEEEECCCCcEEEeeecCCCCCc-ccceEEEEECCEEEEEeccCCCcccCe
Q 006334 181 RDSHSSNVI-ANRLFVYGGDC-GDQYHGDIDMLDMNSLTWSRLAIIGSSPGV-RAGHAAINIGTKVYIIGGVGDKHYYND 257 (650)
Q Consensus 181 R~~hs~v~~-~~~Iyv~GG~~-~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~-R~~~s~v~~~~~IyI~GG~~~~~~~~d 257 (650)
...+....- +++.+++.... .......++.+|........+.. .... ...+....-+++.+++...........
T Consensus 189 ~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~---~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~ 265 (388)
T 3pe7_A 189 WLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKT---HAEGESCTHEFWVPDGSALVYVSYLKGSPDRF 265 (388)
T ss_dssp CEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCC---CCTTEEEEEEEECTTSSCEEEEEEETTCCCEE
T ss_pred cccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeee---CCCCcccccceECCCCCEEEEEecCCCCCcce
Confidence 112222222 44544443322 12234689999998877666542 1111 111222223454333322222222235
Q ss_pred EEEEECCCCcEEEeec
Q 006334 258 IWILNVSTCSWSQLDT 273 (650)
Q Consensus 258 v~~yD~~t~~W~~l~~ 273 (650)
++++|+.+.+-+.+..
T Consensus 266 l~~~d~~~g~~~~l~~ 281 (388)
T 3pe7_A 266 IYSADPETLENRQLTS 281 (388)
T ss_dssp EEEECTTTCCEEEEEE
T ss_pred EEEEecCCCceEEEEc
Confidence 9999999988776643
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.99 E-value=3.4 Score=42.07 Aligned_cols=182 Identities=6% Similarity=0.058 Sum_probs=92.6
Q ss_pred CCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCC
Q 006334 87 GHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTM 166 (650)
Q Consensus 87 ~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~ 166 (650)
++++++.||.++ .+.++|..+..|....... ......-.++....++.+++.|+.+ ..+.+||..+.
T Consensus 27 ~g~~las~~~D~-----~i~iw~~~~~~~~~~~~~~-~~h~~~v~~~~~sp~g~~l~s~s~D-------~~v~iw~~~~~ 93 (345)
T 3fm0_A 27 AGTLLASCGGDR-----RIRIWGTEGDSWICKSVLS-EGHQRTVRKVAWSPCGNYLASASFD-------ATTCIWKKNQD 93 (345)
T ss_dssp TSSCEEEEETTS-----CEEEEEEETTEEEEEEEEC-SSCSSCEEEEEECTTSSEEEEEETT-------SCEEEEEECCC
T ss_pred CCCEEEEEcCCC-----eEEEEEcCCCcceeeeeec-cccCCcEEEEEECCCCCEEEEEECC-------CcEEEEEccCC
Confidence 677788887654 4677788887775421110 0111222333334567788888864 24667777776
Q ss_pred ceeeccccCCCCCCCCcceeeee--cCEEEEEeccCCCCccCeEEEEECCCC-cEEEeeecCCCCCcccceEEEEE--CC
Q 006334 167 RWASPAVKGDIPVPRDSHSSNVI--ANRLFVYGGDCGDQYHGDIDMLDMNSL-TWSRLAIIGSSPGVRAGHAAINI--GT 241 (650)
Q Consensus 167 ~Wt~i~~~~~lP~~R~~hs~v~~--~~~Iyv~GG~~~~~~~n~v~~yd~~t~-~W~~i~~~g~~P~~R~~~s~v~~--~~ 241 (650)
.+..+.. +......-..+.+ ++.+++.|+.+ ..+.+||+.+. .+..+.....- ......+.. ++
T Consensus 94 ~~~~~~~---~~~h~~~v~~v~~sp~~~~l~s~s~D-----~~v~iwd~~~~~~~~~~~~~~~h---~~~v~~~~~~p~~ 162 (345)
T 3fm0_A 94 DFECVTT---LEGHENEVKSVAWAPSGNLLATCSRD-----KSVWVWEVDEEDEYECVSVLNSH---TQDVKHVVWHPSQ 162 (345)
T ss_dssp -EEEEEE---ECCCSSCEEEEEECTTSSEEEEEETT-----SCEEEEEECTTSCEEEEEEECCC---CSCEEEEEECSSS
T ss_pred CeEEEEE---ccCCCCCceEEEEeCCCCEEEEEECC-----CeEEEEECCCCCCeEEEEEecCc---CCCeEEEEECCCC
Confidence 6554331 1111111122222 46677777765 36788887654 34333321111 111222222 45
Q ss_pred EEEEEeccCCCcccCeEEEEECCCCcEEEeecCCCCCCCcceeEEEEE-CCeEEEEcCC
Q 006334 242 KVYIIGGVGDKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVT-GSDIVIYGGC 299 (650)
Q Consensus 242 ~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~~~~~~p~~R~~hsav~~-~~~lyV~GG~ 299 (650)
.+++.|+.++ .+..||..+..|..+..... ....-.++.+. ++++++.|+.
T Consensus 163 ~~l~s~s~d~-----~i~~w~~~~~~~~~~~~~~~--h~~~v~~l~~sp~g~~l~s~s~ 214 (345)
T 3fm0_A 163 ELLASASYDD-----TVKLYREEEDDWVCCATLEG--HESTVWSLAFDPSGQRLASCSD 214 (345)
T ss_dssp SCEEEEETTS-----CEEEEEEETTEEEEEEEECC--CSSCEEEEEECTTSSEEEEEET
T ss_pred CEEEEEeCCC-----cEEEEEecCCCEEEEEEecC--CCCceEEEEECCCCCEEEEEeC
Confidence 6777776543 57888988888876543211 11111122232 5667777764
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=92.96 E-value=7.4 Score=38.40 Aligned_cols=188 Identities=13% Similarity=0.061 Sum_probs=88.5
Q ss_pred CEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEECCCCcEEe
Q 006334 38 GAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMR 117 (650)
Q Consensus 38 ~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~ 117 (650)
+.+++.|+.++ .+..++............ .............+..++.|+.++ .+..+|.....-..
T Consensus 98 g~~l~s~~~d~-----~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~s~s~d~-----~~~~~d~~~~~~~~ 164 (340)
T 4aow_A 98 GQFALSGSWDG-----TLRLWDLTTGTTTRRFVG---HTKDVLSVAFSSDNRQIVSGSRDK-----TIKLWNTLGVCKYT 164 (340)
T ss_dssp SSEEEEEETTS-----EEEEEETTTTEEEEEEEC---CSSCEEEEEECTTSSCEEEEETTS-----CEEEECTTSCEEEE
T ss_pred CCEEEEEcccc-----cceEEeecccceeeeecC---CCCceeEEEEeecCccceeecCCC-----eEEEEEeCCCceEE
Confidence 45555555432 466777776655444332 111111122222455666666543 45566665543222
Q ss_pred eecCCCCCCCCcccEEEEE---cCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee-cCEE
Q 006334 118 PECRGAPPSPRESHTATLV---GDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI-ANRL 193 (650)
Q Consensus 118 l~~~~~~P~~R~~hs~~~~---~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~-~~~I 193 (650)
.... .....-..+.+ ..+.+++.|+.+ ..+.+||+.+.+..... . . . ...-.+++.. ++.+
T Consensus 165 ~~~~----~~~~~v~~~~~~~~~~~~~~~s~~~d-------~~i~i~d~~~~~~~~~~-~-~-h-~~~v~~~~~s~~~~~ 229 (340)
T 4aow_A 165 VQDE----SHSEWVSCVRFSPNSSNPIIVSCGWD-------KLVKVWNLANCKLKTNH-I-G-H-TGYLNTVTVSPDGSL 229 (340)
T ss_dssp ECSS----SCSSCEEEEEECSCSSSCEEEEEETT-------SCEEEEETTTTEEEEEE-C-C-C-SSCEEEEEECTTSSE
T ss_pred EEec----cccCcccceEEccCCCCcEEEEEcCC-------CEEEEEECCCCceeeEe-c-C-C-CCcEEEEEECCCCCE
Confidence 2111 11111112222 224566666653 24778888776544321 0 1 0 1111122222 4667
Q ss_pred EEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCcE
Q 006334 194 FVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCSW 268 (650)
Q Consensus 194 yv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W 268 (650)
++.|+.+ ..+..||+.+..-...-.. ...-.+++...+..++.++.+ ..+.+||+++..-
T Consensus 230 l~s~s~D-----g~i~iwd~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~d-----~~i~iwd~~~~~~ 289 (340)
T 4aow_A 230 CASGGKD-----GQAMLWDLNEGKHLYTLDG-----GDIINALCFSPNRYWLCAATG-----PSIKIWDLEGKII 289 (340)
T ss_dssp EEEEETT-----CEEEEEETTTTEEEEEEEC-----SSCEEEEEECSSSSEEEEEET-----TEEEEEETTTTEE
T ss_pred EEEEeCC-----CeEEEEEeccCceeeeecC-----CceEEeeecCCCCceeeccCC-----CEEEEEECCCCeE
Confidence 7777765 4688899887654332211 111222333344455566543 3588889887654
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=92.85 E-value=7.5 Score=37.84 Aligned_cols=235 Identities=7% Similarity=0.053 Sum_probs=119.6
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCC-CCcceEEEEE--CCEEEEEcccCCCcCcCeEEEEECCCC
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPG-PRDSHSAILW--GHKMIVFGGTNGYKKVNDLHILDLESK 113 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~-pR~~hsa~~~--~~~lyVfGG~~~~~~~ndv~~yD~~t~ 113 (650)
++.||+.... ...+.+||+.......+...+..+. ...-+.+++. +++|||.+.. ....+++||....
T Consensus 40 ~g~l~v~~~~-----~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~----~~~~i~~~d~~g~ 110 (286)
T 1q7f_A 40 QNDIIVADTN-----NHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS----PTHQIQIYNQYGQ 110 (286)
T ss_dssp TCCEEEEEGG-----GTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG----GGCEEEEECTTSC
T ss_pred CCCEEEEECC-----CCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCC----CCCEEEEECCCCc
Confidence 4688886542 2468999988554444432211111 1223445553 6789987632 1256889995544
Q ss_pred cEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee-cCE
Q 006334 114 EWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI-ANR 192 (650)
Q Consensus 114 ~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~-~~~ 192 (650)
....+.. .....-..+++..++.+|+.... .+.+++||........+.....+. .-..++.. ++.
T Consensus 111 ~~~~~~~----~~~~~~~~i~~~~~g~l~v~~~~-------~~~i~~~~~~g~~~~~~~~~~~~~---~p~~i~~~~~g~ 176 (286)
T 1q7f_A 111 FVRKFGA----TILQHPRGVTVDNKGRIIVVECK-------VMRVIIFDQNGNVLHKFGCSKHLE---FPNGVVVNDKQE 176 (286)
T ss_dssp EEEEECT----TTCSCEEEEEECTTSCEEEEETT-------TTEEEEECTTSCEEEEEECTTTCS---SEEEEEECSSSE
T ss_pred EEEEecC----ccCCCceEEEEeCCCCEEEEECC-------CCEEEEEcCCCCEEEEeCCCCccC---CcEEEEECCCCC
Confidence 3333311 11112234454456788886543 146888997654443332111111 11222222 478
Q ss_pred EEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEE-CCEEEEEeccCCCcccCeEEEEECCCCcEEEe
Q 006334 193 LFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINI-GTKVYIIGGVGDKHYYNDIWILNVSTCSWSQL 271 (650)
Q Consensus 193 Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~-~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l 271 (650)
+|+.... .+.+.+||+.......+...+.. ..-..++.. +++||+....++ ..+.+||.....-..+
T Consensus 177 l~v~~~~-----~~~i~~~~~~g~~~~~~~~~g~~---~~p~~i~~d~~G~l~v~~~~~~----~~i~~~~~~g~~~~~~ 244 (286)
T 1q7f_A 177 IFISDNR-----AHCVKVFNYEGQYLRQIGGEGIT---NYPIGVGINSNGEILIADNHNN----FNLTIFTQDGQLISAL 244 (286)
T ss_dssp EEEEEGG-----GTEEEEEETTCCEEEEESCTTTS---CSEEEEEECTTCCEEEEECSSS----CEEEEECTTSCEEEEE
T ss_pred EEEEECC-----CCEEEEEcCCCCEEEEEccCCcc---CCCcEEEECCCCCEEEEeCCCC----EEEEEECCCCCEEEEE
Confidence 8887543 25799999876654444322111 111223332 468888853321 2789999776544444
Q ss_pred ecCCCCCCCcceeEEEEE-CCeEEEEcCCCCCCCCCCcEEEEecCC
Q 006334 272 DTCGQQPQGRFSHAAVVT-GSDIVIYGGCGEDERPLNELLVLQLGA 316 (650)
Q Consensus 272 ~~~~~~p~~R~~hsav~~-~~~lyV~GG~~~~~~~~~d~~~l~l~~ 316 (650)
... .... .-.++++. +++|||... + +.+.++++..
T Consensus 245 ~~~--~~~~-~~~~i~~~~~g~l~vs~~---~----~~v~v~~~~~ 280 (286)
T 1q7f_A 245 ESK--VKHA-QCFDVALMDDGSVVLASK---D----YRLYIYRYVQ 280 (286)
T ss_dssp EES--SCCS-CEEEEEEETTTEEEEEET---T----TEEEEEECSC
T ss_pred ccc--CCCC-cceeEEECCCCcEEEECC---C----CeEEEEEccc
Confidence 331 1111 11233443 678888732 1 4566776653
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=92.74 E-value=8 Score=43.45 Aligned_cols=125 Identities=18% Similarity=0.224 Sum_probs=66.9
Q ss_pred eEEEEECCEEEEEccCCCCcccceEEEEEC-CCC--cEEEeecCCCC--CCC---CcceEEEE--ECCE----EEEEccc
Q 006334 31 HSACYSHGAVYIFGGCCGGLHFGDVLMLNL-DTM--VWSTLATTGQG--PGP---RDSHSAIL--WGHK----MIVFGGT 96 (650)
Q Consensus 31 hs~v~~~~~IyvfGG~~~~~~~~dv~~yD~-~t~--sW~~l~~~g~~--P~p---R~~hsa~~--~~~~----lyVfGG~ 96 (650)
.+.++.++.||+...+ .+.++.+|. .+. .|+.-...... +.. ....+.++ .+++ ||+...
T Consensus 56 ~tP~v~~g~vyv~~~~-----~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~- 129 (599)
T 1w6s_A 56 GAPLVVDGKMYIHTSF-----PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL- 129 (599)
T ss_dssp SCCEEETTEEEEECST-----TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT-
T ss_pred eccEEECCEEEEEeCC-----CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC-
Confidence 3456779999997653 246999999 665 48764322100 000 11223445 5666 877432
Q ss_pred CCCcCcCeEEEEECCCCc--EEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCC--ceee
Q 006334 97 NGYKKVNDLHILDLESKE--WMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTM--RWAS 170 (650)
Q Consensus 97 ~~~~~~ndv~~yD~~t~~--W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~--~Wt~ 170 (650)
...++.+|..+.+ |+.-. ...........+-++. ++.||+-.+..+ ......++.||..+. .|+.
T Consensus 130 -----dg~l~AlDa~TG~~~W~~~~-~~~~~~~~~~ssP~v~-~g~V~vg~~g~e--~g~~g~v~A~D~~TG~~~W~~ 198 (599)
T 1w6s_A 130 -----DGNVAALNAETGETVWKVEN-SDIKVGSTLTIAPYVV-KDKVIIGSSGAE--LGVRGYLTAYDVKTGEQVWRA 198 (599)
T ss_dssp -----TSEEEEEETTTCCEEEEEEC-CCGGGTCBCCSCCEEE-TTEEEECCBCGG--GTCCCEEEEEETTTCCEEEEE
T ss_pred -----CCEEEEEECCCCCEEEeecC-CCCCccceeecCCEEE-CCEEEEEecccc--cCCCCeEEEEECCCCcEEEEE
Confidence 2469999998875 87531 1000000111122334 677766332111 112357899998875 4764
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=92.73 E-value=4.9 Score=40.42 Aligned_cols=209 Identities=15% Similarity=0.214 Sum_probs=96.9
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECC-EEEEEcccCCCcCcCeEEEEECC-CCc
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGH-KMIVFGGTNGYKKVNDLHILDLE-SKE 114 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~-~lyVfGG~~~~~~~ndv~~yD~~-t~~ 114 (650)
+++||+.+... ....+++||+.+..++.+..... ......+.+..-++ .||+.+.. ...+.+||+. ..+
T Consensus 50 dg~l~~~~~~~---~~~~v~~~~~~~g~~~~~~~~~~-~~~~p~~~a~spdg~~l~~~~~~-----~~~v~v~~~~~~g~ 120 (347)
T 3hfq_A 50 KDCLYSVDKED---DEGGIAAWQIDGQTAHKLNTVVA-PGTPPAYVAVDEARQLVYSANYH-----KGTAEVMKIAADGA 120 (347)
T ss_dssp TCEEEEEEEET---TEEEEEEEEEETTEEEEEEEEEE-ESCCCSEEEEETTTTEEEEEETT-----TTEEEEEEECTTSC
T ss_pred CCeEEEEEecC---CCceEEEEEecCCcEEEeeeeec-CCCCCEEEEECCCCCEEEEEeCC-----CCEEEEEEeCCCCC
Confidence 56766655321 13578999998887766543100 01111222233345 46654421 2457777774 333
Q ss_pred EEeee---cCCCCCCCC----cccEEEEEcCCEEEEEccccCCCCcccceEEEEecC-CCceeeccccCCCCCCCCccee
Q 006334 115 WMRPE---CRGAPPSPR----ESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLK-TMRWASPAVKGDIPVPRDSHSS 186 (650)
Q Consensus 115 W~~l~---~~~~~P~~R----~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~-t~~Wt~i~~~~~lP~~R~~hs~ 186 (650)
...+. ..+..|.+| ..+.+++..++++|+.+... +.+++||+. +.+...+... ..+....-..+
T Consensus 121 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~-------~~v~~~~~~~~g~~~~~~~~-~~~~g~~p~~~ 192 (347)
T 3hfq_A 121 LTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGS-------DKVYVYNVSDAGQLSEQSVL-TMEAGFGPRHL 192 (347)
T ss_dssp EEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTT-------TEEEEEEECTTSCEEEEEEE-ECCTTCCEEEE
T ss_pred eeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCC-------CEEEEEEECCCCcEEEeeeE-EcCCCCCCceE
Confidence 33321 112222111 23345555567766654321 368888887 5555432210 11111011112
Q ss_pred eee-cC-EEEEEeccCCCCccCeEEEEE--CCCCcEEEeeecCCCCCc---ccceEEEEE--CC-EEEEEeccCCCcccC
Q 006334 187 NVI-AN-RLFVYGGDCGDQYHGDIDMLD--MNSLTWSRLAIIGSSPGV---RAGHAAINI--GT-KVYIIGGVGDKHYYN 256 (650)
Q Consensus 187 v~~-~~-~Iyv~GG~~~~~~~n~v~~yd--~~t~~W~~i~~~g~~P~~---R~~~s~v~~--~~-~IyI~GG~~~~~~~~ 256 (650)
+.. ++ .+|+.+... +.+.+|+ ..+.++..+......+.. ......+.+ ++ .||+.+.. .+
T Consensus 193 ~~spdg~~l~v~~~~~-----~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~-----~~ 262 (347)
T 3hfq_A 193 VFSPDGQYAFLAGELS-----SQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRG-----YN 262 (347)
T ss_dssp EECTTSSEEEEEETTT-----TEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEET-----TT
T ss_pred EECCCCCEEEEEeCCC-----CEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCC-----CC
Confidence 222 34 477765432 3455555 445777665533222221 112222222 34 57676432 24
Q ss_pred eEEEEECCC-CcEEEee
Q 006334 257 DIWILNVST-CSWSQLD 272 (650)
Q Consensus 257 dv~~yD~~t-~~W~~l~ 272 (650)
.+.+||+.. .++..+.
T Consensus 263 ~v~v~~~~~~g~~~~~~ 279 (347)
T 3hfq_A 263 TLAVFAVTADGHLTLIQ 279 (347)
T ss_dssp EEEEEEECGGGCEEEEE
T ss_pred EEEEEEECCCCcEEEeE
Confidence 688888863 3555554
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.68 E-value=5.6 Score=40.34 Aligned_cols=184 Identities=8% Similarity=0.025 Sum_probs=83.6
Q ss_pred eEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCE-EEEEcccCCCcCcCeEEEEECCCCc--EEeeecCC-----C-
Q 006334 54 DVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW-GHK-MIVFGGTNGYKKVNDLHILDLESKE--WMRPECRG-----A- 123 (650)
Q Consensus 54 dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~-~~~-lyVfGG~~~~~~~ndv~~yD~~t~~--W~~l~~~~-----~- 123 (650)
.+.+||..+......-.. ....-.++.+. ++. +++.|+.++ .+..||+.+.. ...+.... .
T Consensus 167 ~v~~~d~~~~~~~~~~~~----~~~~v~~~~~~~~~~~ll~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 237 (408)
T 4a11_B 167 KVQLCDLKSGSCSHILQG----HRQEILAVSWSPRYDYILATASADS-----RVKLWDVRRASGCLITLDQHNGKKSQAV 237 (408)
T ss_dssp SEEEEESSSSCCCEEECC----CCSCEEEEEECSSCTTEEEEEETTS-----CEEEEETTCSSCCSEECCTTTTCSCCCT
T ss_pred eEEEEeCCCcceeeeecC----CCCcEEEEEECCCCCcEEEEEcCCC-----cEEEEECCCCCcccccccccccccceee
Confidence 577888776543221111 01111223332 333 777777644 47788886653 11110000 0
Q ss_pred ----CCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCc--ceeeeecCEEEEEe
Q 006334 124 ----PPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDS--HSSNVIANRLFVYG 197 (650)
Q Consensus 124 ----~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~--hs~v~~~~~Iyv~G 197 (650)
......-..+....++..++.|+.+ ..+.+||+.+..-............... .......+..++++
T Consensus 238 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (408)
T 4a11_B 238 ESANTAHNGKVNGLCFTSDGLHLLTVGTD-------NRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFV 310 (408)
T ss_dssp TTSSCSCSSCEEEEEECTTSSEEEEEETT-------SCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEE
T ss_pred ccccccccCceeEEEEcCCCCEEEEecCC-------CeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEE
Confidence 0111112233333456677777763 2488899877654322111111111111 11111223344444
Q ss_pred ccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCC
Q 006334 198 GDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTC 266 (650)
Q Consensus 198 G~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~ 266 (650)
+.+ +.+..||..+.+-...- ..........+...++++++.|+.++ .+.+||+.+.
T Consensus 311 ~~~-----~~i~v~d~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~s~~~dg-----~i~iw~~~~~ 366 (408)
T 4a11_B 311 PYG-----STIAVYTVYSGEQITML---KGHYKTVDCCVFQSNFQELYSGSRDC-----NILAWVPSLY 366 (408)
T ss_dssp EET-----TEEEEEETTTCCEEEEE---CCCSSCEEEEEEETTTTEEEEEETTS-----CEEEEEECC-
T ss_pred ecC-----CEEEEEECcCCcceeee---ccCCCeEEEEEEcCCCCEEEEECCCC-----eEEEEeCCCC
Confidence 433 47889998876543322 11111111222223457777776543 5778887765
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.61 E-value=7.4 Score=39.43 Aligned_cols=234 Identities=7% Similarity=0.013 Sum_probs=108.6
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE----CCEEEEEcccCCCcCcCeEEEEECCC
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW----GHKMIVFGGTNGYKKVNDLHILDLES 112 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~----~~~lyVfGG~~~~~~~ndv~~yD~~t 112 (650)
++.+++.|+.+ ..+.+||..+......... +.+. .++... ++.+++.|+.+ ..+..||+.+
T Consensus 111 ~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~-----~~v~~~d~~~ 175 (408)
T 4a11_B 111 DTGMFTSSSFD-----KTLKVWDTNTLQTADVFNF---EETV--YSHHMSPVSTKHCLVAVGTRG-----PKVQLCDLKS 175 (408)
T ss_dssp CTTCEEEEETT-----SEEEEEETTTTEEEEEEEC---SSCE--EEEEECSSCSSCCEEEEEESS-----SSEEEEESSS
T ss_pred CCcEEEEEeCC-----CeEEEeeCCCCccceeccC---CCce--eeeEeecCCCCCcEEEEEcCC-----CeEEEEeCCC
Confidence 34566666643 3688999988765544332 1111 222222 34477777654 3688899877
Q ss_pred CcEEeeecCCCCCCCCcccEEEEEcCCE-EEEEccccCCCCcccceEEEEecCCCce--eecccc-----CCC----CCC
Q 006334 113 KEWMRPECRGAPPSPRESHTATLVGDDK-MVIFGGSGEGEANYLNDLHVLDLKTMRW--ASPAVK-----GDI----PVP 180 (650)
Q Consensus 113 ~~W~~l~~~~~~P~~R~~hs~~~~~~~~-Lyv~GG~~~~~~~~~~dv~~yd~~t~~W--t~i~~~-----~~l----P~~ 180 (650)
.+....- . . ....-.++....++. +++.|+.+ ..+.+||+.+..- ..+... ... ...
T Consensus 176 ~~~~~~~-~-~--~~~~v~~~~~~~~~~~ll~~~~~d-------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (408)
T 4a11_B 176 GSCSHIL-Q-G--HRQEILAVSWSPRYDYILATASAD-------SRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAH 244 (408)
T ss_dssp SCCCEEE-C-C--CCSCEEEEEECSSCTTEEEEEETT-------SCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSC
T ss_pred cceeeee-c-C--CCCcEEEEEECCCCCcEEEEEcCC-------CcEEEEECCCCCcccccccccccccceeeccccccc
Confidence 6432210 0 0 111122333333444 67777763 2478888865431 111000 000 001
Q ss_pred CCcceeeee--cCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCC--CcccceEEEEECCEEEEEeccCCCcccC
Q 006334 181 RDSHSSNVI--ANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSP--GVRAGHAAINIGTKVYIIGGVGDKHYYN 256 (650)
Q Consensus 181 R~~hs~v~~--~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P--~~R~~~s~v~~~~~IyI~GG~~~~~~~~ 256 (650)
...-..+.+ ++..++.|+.+ ..+..||+.+..-.......... ............+..+++++.+ .
T Consensus 245 ~~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 314 (408)
T 4a11_B 245 NGKVNGLCFTSDGLHLLTVGTD-----NRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYG-----S 314 (408)
T ss_dssp SSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEET-----T
T ss_pred cCceeEEEEcCCCCEEEEecCC-----CeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecC-----C
Confidence 111112222 45666677654 36889998876532221100001 1111111111222334444332 4
Q ss_pred eEEEEECCCCcEEEeecCCCCCCCcceeEEEEE-CCeEEEEcCCCCCCCCCCcEEEEecCC
Q 006334 257 DIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVT-GSDIVIYGGCGEDERPLNELLVLQLGA 316 (650)
Q Consensus 257 dv~~yD~~t~~W~~l~~~~~~p~~R~~hsav~~-~~~lyV~GG~~~~~~~~~d~~~l~l~~ 316 (650)
.+.+||+.+..-...-. ...... .++++. ++.+++.|+.+ ..+.++++..
T Consensus 315 ~i~v~d~~~~~~~~~~~---~~~~~v-~~~~~s~~~~~l~s~~~d------g~i~iw~~~~ 365 (408)
T 4a11_B 315 TIAVYTVYSGEQITMLK---GHYKTV-DCCVFQSNFQELYSGSRD------CNILAWVPSL 365 (408)
T ss_dssp EEEEEETTTCCEEEEEC---CCSSCE-EEEEEETTTTEEEEEETT------SCEEEEEECC
T ss_pred EEEEEECcCCcceeeec---cCCCeE-EEEEEcCCCCEEEEECCC------CeEEEEeCCC
Confidence 78899988765443211 111111 233333 56777777743 3566666653
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=92.54 E-value=8 Score=37.40 Aligned_cols=225 Identities=10% Similarity=-0.005 Sum_probs=117.8
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEE-ECCEEEEEcccCCCcCcCeEEEEECCCCcE
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAIL-WGHKMIVFGGTNGYKKVNDLHILDLESKEW 115 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~-~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W 115 (650)
++.||+.... .+.+++||+. ..+....... ....-+++++ .++.+|+.... ...+++||+. .++
T Consensus 25 ~g~l~v~~~~-----~~~v~~~d~~-~~~~~~~~~~---~~~~~~~i~~~~~g~l~v~~~~-----~~~i~~~~~~-g~~ 89 (299)
T 2z2n_A 25 KGKVWITQHK-----ANMISCINLD-GKITEYPLPT---PDAKVMCLTISSDGEVWFTENA-----ANKIGRITKK-GII 89 (299)
T ss_dssp TSCEEEEETT-----TTEEEEECTT-CCEEEEECSS---TTCCEEEEEECTTSCEEEEETT-----TTEEEEECTT-SCE
T ss_pred CCCEEEEecC-----CCcEEEEcCC-CCeEEecCCc---ccCceeeEEECCCCCEEEeCCC-----CCeEEEECCC-CcE
Confidence 4688875321 2468999998 7777654321 1122234444 25788886432 2458899886 555
Q ss_pred EeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee-cCEEE
Q 006334 116 MRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI-ANRLF 194 (650)
Q Consensus 116 ~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~-~~~Iy 194 (650)
+.+... .....-+.++...++.||+.... ...+++||+ +.+........ ....-..++.. ++.+|
T Consensus 90 ~~~~~~---~~~~~~~~i~~~~~g~l~v~~~~-------~~~i~~~d~-~g~~~~~~~~~---~~~~~~~i~~~~~g~l~ 155 (299)
T 2z2n_A 90 KEYTLP---NPDSAPYGITEGPNGDIWFTEMN-------GNRIGRITD-DGKIREYELPN---KGSYPSFITLGSDNALW 155 (299)
T ss_dssp EEEECS---STTCCEEEEEECTTSCEEEEETT-------TTEEEEECT-TCCEEEEECSS---TTCCEEEEEECTTSCEE
T ss_pred EEEeCC---CcCCCceeeEECCCCCEEEEecC-------CceEEEECC-CCCEEEecCCC---CCCCCceEEEcCCCCEE
Confidence 554211 11222334444446788886432 135888998 55555432111 11112233332 46788
Q ss_pred EEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEE-CCEEEEEeccCCCcccCeEEEEECCCCcEEEeec
Q 006334 195 VYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINI-GTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLDT 273 (650)
Q Consensus 195 v~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~-~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~~ 273 (650)
+..-. .+.+++||+ +.+...+..... ...-..++.. +++||+.... ...+++||+ +..+..+..
T Consensus 156 v~~~~-----~~~i~~~~~-~g~~~~~~~~~~---~~~~~~i~~~~~g~l~v~~~~-----~~~i~~~~~-~g~~~~~~~ 220 (299)
T 2z2n_A 156 FTENQ-----NNAIGRITE-SGDITEFKIPTP---ASGPVGITKGNDDALWFVEII-----GNKIGRITT-SGEITEFKI 220 (299)
T ss_dssp EEETT-----TTEEEEECT-TCCEEEEECSST---TCCEEEEEECTTSSEEEEETT-----TTEEEEECT-TCCEEEEEC
T ss_pred EEeCC-----CCEEEEEcC-CCcEEEeeCCCC---CCcceeEEECCCCCEEEEccC-----CceEEEECC-CCcEEEEEC
Confidence 76421 257999999 777776532111 1112233333 3578877422 347999999 777766542
Q ss_pred CCCCCCCcceeEEEEE-CCeEEEEcCCCCCCCCCCcEEEEec
Q 006334 274 CGQQPQGRFSHAAVVT-GSDIVIYGGCGEDERPLNELLVLQL 314 (650)
Q Consensus 274 ~~~~p~~R~~hsav~~-~~~lyV~GG~~~~~~~~~d~~~l~l 314 (650)
.. .. ..-.++++. ++.||+.... .+.+++++.
T Consensus 221 ~~--~~-~~~~~i~~~~~g~l~v~~~~------~~~i~~~d~ 253 (299)
T 2z2n_A 221 PT--PN-ARPHAITAGAGIDLWFTEWG------ANKIGRLTS 253 (299)
T ss_dssp SS--TT-CCEEEEEECSTTCEEEEETT------TTEEEEEET
T ss_pred CC--CC-CCceeEEECCCCCEEEeccC------CceEEEECC
Confidence 11 11 112233333 5678776421 135666665
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=92.51 E-value=12 Score=40.43 Aligned_cols=234 Identities=9% Similarity=-0.001 Sum_probs=109.7
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCC----c-EEEeecCCCCCCCC-cceEEEEE--CCEEEEEcccCCCcCcCeEEEE
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTM----V-WSTLATTGQGPGPR-DSHSAILW--GHKMIVFGGTNGYKKVNDLHIL 108 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~----s-W~~l~~~g~~P~pR-~~hsa~~~--~~~lyVfGG~~~~~~~ndv~~y 108 (650)
++.++++|+ .+.+.+||+.+. . -..+... . .. ....+... ++++++.|+.++ .+.++
T Consensus 29 dg~~l~~~~------~~~v~v~~~~~~~~~~~~~~~~~~h---~-~~~v~~~~~sp~~~~~~l~s~~~dg-----~v~vw 93 (615)
T 1pgu_A 29 TTNAIAYPC------GKSAFVRCLDDGDSKVPPVVQFTGH---G-SSVVTTVKFSPIKGSQYLCSGDESG-----KVIVW 93 (615)
T ss_dssp TTTEEEEEE------TTEEEEEECCSSCCSSCSEEEECTT---T-TSCEEEEEECSSTTCCEEEEEETTS-----EEEEE
T ss_pred CCCEEEEec------CCeEEEEECCCCCCccccceEEecC---C-CceEEEEEECcCCCCCEEEEecCCC-----EEEEE
Confidence 455666665 136889998865 3 2223211 1 11 22222333 667778787643 56777
Q ss_pred ECCCC------cEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCC
Q 006334 109 DLESK------EWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRD 182 (650)
Q Consensus 109 D~~t~------~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~ 182 (650)
|..+. ....+..... ....-..+....+++.++.++.+. .....++.||..... ..+. . . ...
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~---~~~~~v~~~d~~~~~-~~~~---~-~-~~~ 162 (615)
T 1pgu_A 94 GWTFDKESNSVEVNVKSEFQV--LAGPISDISWDFEGRRLCVVGEGR---DNFGVFISWDSGNSL-GEVS---G-H-SQR 162 (615)
T ss_dssp EEEEEGGGTEEEEEEEEEEEC--CSSCEEEEEECTTSSEEEEEECCS---SCSEEEEETTTCCEE-EECC---S-C-SSC
T ss_pred eCCCCcccccccccccchhhc--ccccEEEEEEeCCCCEEEEeccCC---CCccEEEEEECCCcc-eeee---c-C-Ccc
Confidence 77543 2222211111 112233444445677777777532 123467777732211 1111 1 0 111
Q ss_pred cceeeee-cCE-EEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcc-cceEEEE-EC-CEEEEEeccCCCcccCe
Q 006334 183 SHSSNVI-ANR-LFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVR-AGHAAIN-IG-TKVYIIGGVGDKHYYND 257 (650)
Q Consensus 183 ~hs~v~~-~~~-Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R-~~~s~v~-~~-~~IyI~GG~~~~~~~~d 257 (650)
-.++... ++. +++.|+.+ ..+..||..+.+-...- ....... .-.+++. .+ +++++.|+.+ ..
T Consensus 163 v~~~~~~~~~~~~l~~~~~d-----~~v~vwd~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~ 230 (615)
T 1pgu_A 163 INACHLKQSRPMRSMTVGDD-----GSVVFYQGPPFKFSASD--RTHHKQGSFVRDVEFSPDSGEFVITVGSD-----RK 230 (615)
T ss_dssp EEEEEECSSSSCEEEEEETT-----TEEEEEETTTBEEEEEE--CSSSCTTCCEEEEEECSTTCCEEEEEETT-----CC
T ss_pred EEEEEECCCCCcEEEEEeCC-----CcEEEEeCCCcceeeee--cccCCCCceEEEEEECCCCCCEEEEEeCC-----Ce
Confidence 1122222 233 67777654 47888998766543321 1111100 1222232 24 5677777654 36
Q ss_pred EEEEECCCCcEEEee-cCCCCCCCcceeEEEEECCeEEEEcCCCCCCCCCCcEEEEecC
Q 006334 258 IWILNVSTCSWSQLD-TCGQQPQGRFSHAAVVTGSDIVIYGGCGEDERPLNELLVLQLG 315 (650)
Q Consensus 258 v~~yD~~t~~W~~l~-~~~~~p~~R~~hsav~~~~~lyV~GG~~~~~~~~~d~~~l~l~ 315 (650)
+.+||+.+.+....- ........... ++.+.++.+++.|+.+ ..+.++++.
T Consensus 231 i~vwd~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~l~~~~~d------~~i~~wd~~ 282 (615)
T 1pgu_A 231 ISCFDGKSGEFLKYIEDDQEPVQGGIF-ALSWLDSQKFATVGAD------ATIRVWDVT 282 (615)
T ss_dssp EEEEETTTCCEEEECCBTTBCCCSCEE-EEEESSSSEEEEEETT------SEEEEEETT
T ss_pred EEEEECCCCCEeEEecccccccCCceE-EEEEcCCCEEEEEcCC------CcEEEEECC
Confidence 899999887654432 10001111111 2222266777777642 245556654
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=92.49 E-value=11 Score=39.09 Aligned_cols=218 Identities=15% Similarity=0.184 Sum_probs=101.9
Q ss_pred ceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCccc
Q 006334 53 GDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW-GHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESH 131 (650)
Q Consensus 53 ~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~-~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h 131 (650)
+.++++|..+++...+-.... . ...=.++++. ++++++.|+.++ .+.++|..+.+-.... .+ ...+ .
T Consensus 125 ~tV~lWd~~tg~~~~~~~~~~-~-~~~V~sv~fspdg~~lasgs~Dg-----~v~iWd~~~~~~~~~~-~~--h~~~--v 192 (420)
T 4gga_A 125 NSVYLWSASSGDILQLLQMEQ-P-GEYISSVAWIKEGNYLAVGTSSA-----EVQLWDVQQQKRLRNM-TS--HSAR--V 192 (420)
T ss_dssp TEEEEEETTTCCEEEEEECCS-T-TCCEEEEEECTTSSEEEEEETTS-----CEEEEETTTTEEEEEE-CC--CSSC--E
T ss_pred CEEEEEECCCCCEEEEEEecC-C-CCcEEEEEECCCCCEEEEEECCC-----eEEEEEcCCCcEEEEE-eC--CCCc--e
Confidence 468999999988766543311 0 1111223332 677788887654 5788898887543321 11 1111 1
Q ss_pred EEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeee--ecCEEEEEeccCCCCccCeEE
Q 006334 132 TATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNV--IANRLFVYGGDCGDQYHGDID 209 (650)
Q Consensus 132 s~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~--~~~~Iyv~GG~~~~~~~n~v~ 209 (650)
..... ++.+++.|+.+ ..+..+|............+ .......+. -++..++.|+.+ +.+.
T Consensus 193 ~~~s~-~~~~l~sgs~d-------~~i~~~d~~~~~~~~~~~~~----h~~~~~~~~~~~~g~~l~s~~~D-----~~v~ 255 (420)
T 4gga_A 193 GSLSW-NSYILSSGSRS-------GHIHHHDVRVAEHHVATLSG----HSQEVCGLRWAPDGRHLASGGND-----NLVN 255 (420)
T ss_dssp EEEEE-ETTEEEEEETT-------SEEEEEETTSSSCEEEEEEC----CSSCEEEEEECTTSSEEEEEETT-----SCEE
T ss_pred EEEee-CCCEEEEEeCC-------CceeEeeecccceeeEEecc----cccceeeeeecCCCCeeeeeecc-----ccce
Confidence 22223 56677777763 24677776554332211111 111111111 245666666654 3567
Q ss_pred EEECCCCc--EEEeeecCCCCCcccceEEEE--ECCEEEEE-eccCCCcccCeEEEEECCCCcEEEeecCCCCCCCccee
Q 006334 210 MLDMNSLT--WSRLAIIGSSPGVRAGHAAIN--IGTKVYII-GGVGDKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSH 284 (650)
Q Consensus 210 ~yd~~t~~--W~~i~~~g~~P~~R~~~s~v~--~~~~IyI~-GG~~~~~~~~dv~~yD~~t~~W~~l~~~~~~p~~R~~h 284 (650)
++|..+.. +..+....... ..-.+++. .+..++.. ||..+ ..|.+||+.+..-...-.. ...-.
T Consensus 256 i~~~~~~~~~~~~~~~~~~~~--~~V~~~~~~p~~~~~la~~~gs~D----~~I~iwd~~t~~~~~~~~~-----~~~v~ 324 (420)
T 4gga_A 256 VWPSAPGEGGWVPLQTFTQHQ--GAVKAVAWCPWQSNVLATGGGTSD----RHIRIWNVCSGACLSAVDA-----HSQVC 324 (420)
T ss_dssp EEESSCCSSCSCCSEEECCCS--SCEEEEEECTTCTTEEEEEECTTT----CEEEEEETTTTEEEEEEEC-----SSCEE
T ss_pred EEeeccccccceeeeeecccC--CceeeeeeCCCcccEEEEEeecCC----CEEEEEeCCccccceeecc-----cccee
Confidence 77765432 11111100110 11111222 23345444 44333 3588999988765443221 11112
Q ss_pred EEEEE-C-CeEEEEcCCCCCCCCCCcEEEEecC
Q 006334 285 AAVVT-G-SDIVIYGGCGEDERPLNELLVLQLG 315 (650)
Q Consensus 285 sav~~-~-~~lyV~GG~~~~~~~~~d~~~l~l~ 315 (650)
+++.. + +.+++..|..+ ..+.++++.
T Consensus 325 ~~~~~~~~~~lv~~sg~~d-----~~I~iwd~~ 352 (420)
T 4gga_A 325 SILWSPHYKELISGHGFAQ-----NQLVIWKYP 352 (420)
T ss_dssp EEEEETTTTEEEEEECTTT-----CCEEEEETT
T ss_pred eeeecCCCCeEEEEEecCC-----CEEEEEECC
Confidence 23333 3 34555555432 356677665
|
| >1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1 | Back alignment and structure |
|---|
Probab=92.48 E-value=6.5 Score=37.44 Aligned_cols=153 Identities=16% Similarity=0.129 Sum_probs=85.6
Q ss_pred EEEEECCEEEEEccCCCCcccceEEEEECCC--CcEEEeecC---CCCCCCCcceEEEEE--CCEEEEEcccCCCcCcCe
Q 006334 32 SACYSHGAVYIFGGCCGGLHFGDVLMLNLDT--MVWSTLATT---GQGPGPRDSHSAILW--GHKMIVFGGTNGYKKVND 104 (650)
Q Consensus 32 s~v~~~~~IyvfGG~~~~~~~~dv~~yD~~t--~sW~~l~~~---g~~P~pR~~hsa~~~--~~~lyVfGG~~~~~~~nd 104 (650)
+++.+++.+|+|=| +.+|+++... ......... ...|.. .. ++... ++++|+|-| +.
T Consensus 11 Ai~~~~g~~yfFkg-------~~~Wr~~~~~~~~~~~p~~Is~~w~glP~~-ID-Aa~~~~~~~~~yfFkG-------~~ 74 (195)
T 1itv_A 11 AIAEIGNQLYLFKD-------GKYWRFSEGRGSRPQGPFLIADKWPALPRK-LD-SVFEEPLSKKLFFFSG-------RQ 74 (195)
T ss_dssp EEEEETTEEEEEET-------TEEEEECCSSSCCCEEEEEHHHHCTTSCSS-CS-EEEECTTTCCEEEEET-------TE
T ss_pred EEEEeCCEEEEEEC-------CEEEEEECCccccCCCcEEhhhccCCCCCC-cc-EEEEECCCCeEEEEeC-------CE
Confidence 34557999999988 4689998765 333333221 122321 11 22222 678999988 57
Q ss_pred EEEEECCCCcE-EeeecCCCCCC-CCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceee-----cc-ccCC
Q 006334 105 LHILDLESKEW-MRPECRGAPPS-PRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWAS-----PA-VKGD 176 (650)
Q Consensus 105 v~~yD~~t~~W-~~l~~~~~~P~-~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~-----i~-~~~~ 176 (650)
+|+|+..+..- +.+..-+ .|. ...--++....++++|+|-|. ..|+||..+++-.. +. .-..
T Consensus 75 yw~~~~~~~~~Pk~i~~~G-~p~~~~~iDAA~~~~~g~~yfFkg~---------~ywr~d~~~~~~~~gyPr~i~~~w~G 144 (195)
T 1itv_A 75 VWVYTGASVLGPRRLDKLG-LGADVAQVTGALRSGRGKMLLFSGR---------RLWRFDVKAQMVDPRSASEVDRMFPG 144 (195)
T ss_dssp EEEEETTEEEEEEEGGGGT-CCTTCCCCCEEEECSTTEEEEEETT---------EEEEEETTTTEECGGGCEEHHHHSTT
T ss_pred EEEEcCCccCCCEEeeecc-cCCCccceeEEEEcCCCeEEEEeCC---------EEEEEeCCcccccCCCccChhhcCCC
Confidence 88888543211 1121111 222 112223333457899999763 48999987643221 10 0012
Q ss_pred CCCCCCcceeeeecCEEEEEeccCCCCccCeEEEEECCCCcEE
Q 006334 177 IPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWS 219 (650)
Q Consensus 177 lP~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~ 219 (650)
+| ..-.++...++.+|+|-| +..|+||..+..-.
T Consensus 145 vp--~~idaa~~~~g~~Yffkg-------~~y~~~~~~~~~v~ 178 (195)
T 1itv_A 145 VP--LDTHDVFQFREKAYFCQD-------RFYWRVSSRSELNQ 178 (195)
T ss_dssp SC--SSCSEEEEETTEEEEEET-------TEEEEEECCTTCCE
T ss_pred CC--CCCCEEEEeCCeEEEEeC-------CEEEEEECCccEEe
Confidence 22 223455556799999988 67899998776533
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=92.46 E-value=6.7 Score=40.98 Aligned_cols=66 Identities=9% Similarity=0.110 Sum_probs=36.7
Q ss_pred CCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCC
Q 006334 87 GHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTM 166 (650)
Q Consensus 87 ~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~ 166 (650)
++..++.|+.+ ..+..+|+.+......- .+ ....-..+....++.+++.|+.+ ..+.+||+.+.
T Consensus 203 ~~~~l~s~s~D-----~~i~~wd~~~~~~~~~~-~~---h~~~v~~~~~~~~g~~l~s~s~D-------~~v~vwd~~~~ 266 (410)
T 1vyh_C 203 NGDHIVSASRD-----KTIKMWEVQTGYCVKTF-TG---HREWVRMVRPNQDGTLIASCSND-------QTVRVWVVATK 266 (410)
T ss_dssp SSSEEEEEETT-----SEEEEEETTTCCEEEEE-EC---CSSCEEEEEECTTSSEEEEEETT-------SCEEEEETTTC
T ss_pred CCCEEEEEeCC-----CeEEEEECCCCcEEEEE-eC---CCccEEEEEECCCCCEEEEEcCC-------CeEEEEECCCC
Confidence 56667777754 36888898877643321 11 01111223333457777877763 24777777665
Q ss_pred ce
Q 006334 167 RW 168 (650)
Q Consensus 167 ~W 168 (650)
..
T Consensus 267 ~~ 268 (410)
T 1vyh_C 267 EC 268 (410)
T ss_dssp CE
T ss_pred ce
Confidence 43
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=92.44 E-value=8.2 Score=37.88 Aligned_cols=194 Identities=11% Similarity=0.163 Sum_probs=94.6
Q ss_pred CEEEEEccCCCCcccceEEEEECCCCcEEEe-ecCCCCCCCCcceEEEEE-CCEEEEEcccCC----------CcCcCeE
Q 006334 38 GAVYIFGGCCGGLHFGDVLMLNLDTMVWSTL-ATTGQGPGPRDSHSAILW-GHKMIVFGGTNG----------YKKVNDL 105 (650)
Q Consensus 38 ~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l-~~~g~~P~pR~~hsa~~~-~~~lyVfGG~~~----------~~~~ndv 105 (650)
+.||+.... +.+++||+. ++...+ ...........-+.+++. ++++|+...... ......+
T Consensus 83 g~l~v~~~~------~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l 155 (314)
T 1pjx_A 83 NQLFVADMR------LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSI 155 (314)
T ss_dssp SEEEEEETT------TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEE
T ss_pred CcEEEEECC------CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeE
Confidence 688886541 369999998 777665 332110001112333333 678887653321 1113579
Q ss_pred EEEECCCCcEEeeecCCCCCCCCcccEEEEE----cCC-EEEEEccccCCCCcccceEEEEecC-CCceeeccccCCCCC
Q 006334 106 HILDLESKEWMRPECRGAPPSPRESHTATLV----GDD-KMVIFGGSGEGEANYLNDLHVLDLK-TMRWASPAVKGDIPV 179 (650)
Q Consensus 106 ~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~----~~~-~Lyv~GG~~~~~~~~~~dv~~yd~~-t~~Wt~i~~~~~lP~ 179 (650)
++||+. .+...+... . .....++.. .++ .||+.... .+.+++||++ +.++........++.
T Consensus 156 ~~~~~~-g~~~~~~~~--~---~~~~~i~~~~~~d~dg~~l~v~~~~-------~~~i~~~~~~~~g~~~~~~~~~~~~~ 222 (314)
T 1pjx_A 156 YCFTTD-GQMIQVDTA--F---QFPNGIAVRHMNDGRPYQLIVAETP-------TKKLWSYDIKGPAKIENKKVWGHIPG 222 (314)
T ss_dssp EEECTT-SCEEEEEEE--E---SSEEEEEEEECTTSCEEEEEEEETT-------TTEEEEEEEEETTEEEEEEEEEECCC
T ss_pred EEECCC-CCEEEeccC--C---CCcceEEEecccCCCCCEEEEEECC-------CCeEEEEECCCCCccccceEEEECCC
Confidence 999987 555543111 0 112334444 455 46665332 1468889876 444322111111211
Q ss_pred C--CCcceeeee-cCEEEEEeccCCCCccCeEEEEECCCCcE-EEeeecCCCCCcccceEEEE-ECCE-EEEEeccCCCc
Q 006334 180 P--RDSHSSNVI-ANRLFVYGGDCGDQYHGDIDMLDMNSLTW-SRLAIIGSSPGVRAGHAAIN-IGTK-VYIIGGVGDKH 253 (650)
Q Consensus 180 ~--R~~hs~v~~-~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W-~~i~~~g~~P~~R~~~s~v~-~~~~-IyI~GG~~~~~ 253 (650)
. ..-..++.. ++.+|+.... .+.+.+||+.+.+. ..+. .+. ..-.+++. -+++ ||+....
T Consensus 223 ~~~~~p~~i~~d~~G~l~v~~~~-----~~~i~~~d~~~g~~~~~~~----~~~-~~~~~i~~~~dg~~l~v~~~~---- 288 (314)
T 1pjx_A 223 THEGGADGMDFDEDNNLLVANWG-----SSHIEVFGPDGGQPKMRIR----CPF-EKPSNLHFKPQTKTIFVTEHE---- 288 (314)
T ss_dssp CSSCEEEEEEEBTTCCEEEEEET-----TTEEEEECTTCBSCSEEEE----CSS-SCEEEEEECTTSSEEEEEETT----
T ss_pred CCCCCCCceEECCCCCEEEEEcC-----CCEEEEEcCCCCcEeEEEe----CCC-CCceeEEECCCCCEEEEEeCC----
Confidence 1 111122222 4678876432 14789999885442 2222 121 11222332 2344 7776432
Q ss_pred ccCeEEEEECCCC
Q 006334 254 YYNDIWILNVSTC 266 (650)
Q Consensus 254 ~~~dv~~yD~~t~ 266 (650)
...+++|++...
T Consensus 289 -~~~l~~~~~~~~ 300 (314)
T 1pjx_A 289 -NNAVWKFEWQRN 300 (314)
T ss_dssp -TTEEEEEECSSC
T ss_pred -CCeEEEEeCCCC
Confidence 247999998754
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=92.38 E-value=9 Score=37.62 Aligned_cols=111 Identities=14% Similarity=0.110 Sum_probs=57.3
Q ss_pred CEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCC--CCcceEEEEE-CC-EEEEEccc---CCCc---CcCeEEE
Q 006334 38 GAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPG--PRDSHSAILW-GH-KMIVFGGT---NGYK---KVNDLHI 107 (650)
Q Consensus 38 ~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~--pR~~hsa~~~-~~-~lyVfGG~---~~~~---~~ndv~~ 107 (650)
+.+|+.+.. ...+++||+.+.+-......+. +. ...-+.+++. ++ .||+.... .... ..+.+++
T Consensus 46 ~~l~v~~~~-----~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v 119 (337)
T 1pby_B 46 RIAYATVNK-----SESLVKIDLVTGETLGRIDLST-PEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVAL 119 (337)
T ss_dssp SEEEEEETT-----TTEEEEEETTTCCEEEEEECCB-TTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEE
T ss_pred CEEEEEeCC-----CCeEEEEECCCCCeEeeEEcCC-cccccccccceEECCCCCEEEEEecccccccccccccCceEEE
Confidence 367776542 2479999998877543222211 00 0011233333 44 67765421 1111 2378999
Q ss_pred EECCCCcEEeeecCCCCCCCCcccEEEEEcCCE-EEEEccccCCCCcccceEEEEecCCCcee
Q 006334 108 LDLESKEWMRPECRGAPPSPRESHTATLVGDDK-MVIFGGSGEGEANYLNDLHVLDLKTMRWA 169 (650)
Q Consensus 108 yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~-Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt 169 (650)
||+.+.+....-..+ ..-..++...+++ ||+.. +.+++||+.+.+-.
T Consensus 120 ~d~~~~~~~~~~~~~-----~~~~~~~~s~dg~~l~~~~----------~~i~~~d~~~~~~~ 167 (337)
T 1pby_B 120 YDAETLSRRKAFEAP-----RQITMLAWARDGSKLYGLG----------RDLHVMDPEAGTLV 167 (337)
T ss_dssp EETTTTEEEEEEECC-----SSCCCEEECTTSSCEEEES----------SSEEEEETTTTEEE
T ss_pred EECCCCcEEEEEeCC-----CCcceeEECCCCCEEEEeC----------CeEEEEECCCCcEe
Confidence 999887654421111 1123344444554 55541 35889998877644
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=92.32 E-value=4.2 Score=39.08 Aligned_cols=185 Identities=15% Similarity=0.069 Sum_probs=94.2
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCcCcCeEEEEECCCCcE
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW-GHKMIVFGGTNGYKKVNDLHILDLESKEW 115 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~-~~~lyVfGG~~~~~~~ndv~~yD~~t~~W 115 (650)
++.||+... .+.+++||+.......+...+ ...-..+++. +++||+.... .+.+++||..+...
T Consensus 77 ~g~l~v~~~------~~~i~~~d~~~~~~~~~~~~~----~~~p~~i~~~~~g~l~v~~~~-----~~~i~~~~~~~~~~ 141 (270)
T 1rwi_B 77 AGTVYVTDF------NNRVVTLAAGSNNQTVLPFDG----LNYPEGLAVDTQGAVYVADRG-----NNRVVKLAAGSKTQ 141 (270)
T ss_dssp TCCEEEEET------TTEEEEECTTCSCCEECCCCS----CSSEEEEEECTTCCEEEEEGG-----GTEEEEECTTCCSC
T ss_pred CCCEEEEcC------CCEEEEEeCCCceEeeeecCC----cCCCcceEECCCCCEEEEECC-----CCEEEEEECCCcee
Confidence 356776543 236888888776544432211 1222344443 5778886432 24688887766554
Q ss_pred EeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee-cCEEE
Q 006334 116 MRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI-ANRLF 194 (650)
Q Consensus 116 ~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~-~~~Iy 194 (650)
..... .....-..+++..+++||+.... .+.+.+||........... ..+ ..-..++.. ++.+|
T Consensus 142 ~~~~~----~~~~~p~~i~~~~~g~l~v~~~~-------~~~i~~~~~~~~~~~~~~~-~~~---~~p~~i~~d~~g~l~ 206 (270)
T 1rwi_B 142 TVLPF----TGLNDPDGVAVDNSGNVYVTDTD-------NNRVVKLEAESNNQVVLPF-TDI---TAPWGIAVDEAGTVY 206 (270)
T ss_dssp EECCC----CSCCSCCCEEECTTCCEEEEEGG-------GTEEEEECTTTCCEEECCC-SSC---CSEEEEEECTTCCEE
T ss_pred Eeecc----ccCCCceeEEEeCCCCEEEEECC-------CCEEEEEecCCCceEeecc-cCC---CCceEEEECCCCCEE
Confidence 33211 11112234444456788886543 2468899987665433211 111 111223332 35788
Q ss_pred EEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEE-CCEEEEEeccCCCcccCeEEEEECCC
Q 006334 195 VYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINI-GTKVYIIGGVGDKHYYNDIWILNVST 265 (650)
Q Consensus 195 v~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~-~~~IyI~GG~~~~~~~~dv~~yD~~t 265 (650)
+..... +.+.+||+....-..+. ......-.+++.. +++||+.... .+.|.+|++..
T Consensus 207 v~~~~~-----~~v~~~~~~~~~~~~~~----~~~~~~p~~i~~~~~g~l~v~~~~-----~~~v~~~~~~~ 264 (270)
T 1rwi_B 207 VTEHNT-----NQVVKLLAGSTTSTVLP----FTGLNTPLAVAVDSDRTVYVADRG-----NDRVVKLTSLE 264 (270)
T ss_dssp EEETTT-----SCEEEECTTCSCCEECC----CCSCSCEEEEEECTTCCEEEEEGG-----GTEEEEECCCG
T ss_pred EEECCC-----CcEEEEcCCCCcceeec----cCCCCCceeEEECCCCCEEEEECC-----CCEEEEEcCCC
Confidence 875422 47899998765433322 1111112233332 3578887542 34677776653
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=92.31 E-value=18 Score=41.04 Aligned_cols=124 Identities=19% Similarity=0.233 Sum_probs=68.7
Q ss_pred EEEEECCEEEEEccCCCCcccceEEEEECCCCc--EEEeecCCCCC-----CCCcceEEEEECCEEEEEcccCCCcCcCe
Q 006334 32 SACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMV--WSTLATTGQGP-----GPRDSHSAILWGHKMIVFGGTNGYKKVND 104 (650)
Q Consensus 32 s~v~~~~~IyvfGG~~~~~~~~dv~~yD~~t~s--W~~l~~~g~~P-----~pR~~hsa~~~~~~lyVfGG~~~~~~~nd 104 (650)
+.++.++.||+... .+.++.+|..+++ |+.-....... ......+.++.+++||+... ...
T Consensus 65 ~P~v~~g~vyv~~~------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~------dg~ 132 (689)
T 1yiq_A 65 TPIVVDGVMYTTGP------FSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL------DGR 132 (689)
T ss_dssp CCEEETTEEEEECG------GGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT------TSE
T ss_pred cCEEECCEEEEEcC------CCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc------CCE
Confidence 44567999999765 2469999987654 87643221000 00112234567888888542 246
Q ss_pred EEEEECCCCc--EEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCc--eee
Q 006334 105 LHILDLESKE--WMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMR--WAS 170 (650)
Q Consensus 105 v~~yD~~t~~--W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~--Wt~ 170 (650)
++.+|..+.+ |+.-.............+-++. ++.+|+-.+..+ ...-..++.||..+.+ |+.
T Consensus 133 l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~-~g~v~vg~~~~~--~~~~g~v~a~D~~tG~~~W~~ 199 (689)
T 1yiq_A 133 LEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVV-NGKVVIGNGGAE--FGVRGYVTAYDAETGKEAWRF 199 (689)
T ss_dssp EEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEE-TTEEEECCBCTT--TCCBCEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCCEeeeecCcCCCCCCccccCCcEEE-CCEEEEEeCCCc--cCCCCEEEEEECCCCcEEEEe
Confidence 8999998874 8764210000001111222334 677776332211 1234579999998765 875
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.23 E-value=6.1 Score=41.71 Aligned_cols=159 Identities=11% Similarity=0.012 Sum_probs=80.1
Q ss_pred CEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCc
Q 006334 88 HKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMR 167 (650)
Q Consensus 88 ~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~ 167 (650)
+++++.|+.+ ..+.+||+.+......-..+ . ...-.+++.. ++.+++.|+.+ ..+.+||+.+.+
T Consensus 210 ~~~l~s~~~d-----~~i~vwd~~~~~~~~~~~~~-h--~~~v~~~~~s-d~~~l~s~~~d-------~~v~vwd~~~~~ 273 (450)
T 2vdu_B 210 HQFIITSDRD-----EHIKISHYPQCFIVDKWLFG-H--KHFVSSICCG-KDYLLLSAGGD-------DKIFAWDWKTGK 273 (450)
T ss_dssp CEEEEEEETT-----SCEEEEEESCTTCEEEECCC-C--SSCEEEEEEC-STTEEEEEESS-------SEEEEEETTTCC
T ss_pred CcEEEEEcCC-----CcEEEEECCCCceeeeeecC-C--CCceEEEEEC-CCCEEEEEeCC-------CeEEEEECCCCc
Confidence 7788888764 36888888776543321111 1 1112233333 67777777753 358888887765
Q ss_pred eeeccccC----CC-----------------CCCCCcceeeee-cCEEEEEeccCCCCccCeEEEEEC--C-CCcEEEee
Q 006334 168 WASPAVKG----DI-----------------PVPRDSHSSNVI-ANRLFVYGGDCGDQYHGDIDMLDM--N-SLTWSRLA 222 (650)
Q Consensus 168 Wt~i~~~~----~l-----------------P~~R~~hs~v~~-~~~Iyv~GG~~~~~~~n~v~~yd~--~-t~~W~~i~ 222 (650)
....-... .+ .....-..++.. ++.++++++... +.+.+||+ . ...+..+.
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d----~~i~iw~~~~~~~~~l~~~~ 349 (450)
T 2vdu_B 274 NLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEAT----KCIIILEMSEKQKGDLALKQ 349 (450)
T ss_dssp EEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTC----SEEEEEEECSSSTTCEEEEE
T ss_pred EeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCC----CeEEEEEeccCCCCceeecc
Confidence 33211000 00 000111111222 244444443221 57888887 3 34555554
Q ss_pred ecCCCCCcccceEEEEECCEEEEEeccCCC----cccCeEEEEECCCCcEE
Q 006334 223 IIGSSPGVRAGHAAINIGTKVYIIGGVGDK----HYYNDIWILNVSTCSWS 269 (650)
Q Consensus 223 ~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~----~~~~dv~~yD~~t~~W~ 269 (650)
.... ...-.+++...+.+++..+.... ...-++|.++.+++.|.
T Consensus 350 ~~~~---~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~~~~~~ 397 (450)
T 2vdu_B 350 IITF---PYNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLNENSFV 397 (450)
T ss_dssp EEEC---SSCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETTTTEEE
T ss_pred Eecc---CCceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcCCCeEE
Confidence 3211 12233445556777777654321 22337888888888886
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=92.21 E-value=11 Score=38.35 Aligned_cols=230 Identities=11% Similarity=0.051 Sum_probs=110.5
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEECCCCcEE
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESKEWM 116 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~ 116 (650)
++..++.|+.++ .+.++|..+......... +.......+...++..++.||.++ .+..|+.....-.
T Consensus 75 d~~~l~s~s~Dg-----~v~vWd~~~~~~~~~~~~---~~~~v~~~~~sp~g~~lasg~~d~-----~i~v~~~~~~~~~ 141 (354)
T 2pbi_B 75 DKRRIVSSSQDG-----KVIVWDSFTTNKEHAVTM---PCTWVMACAYAPSGCAIACGGLDN-----KCSVYPLTFDKNE 141 (354)
T ss_dssp TSSEEEEEETTS-----EEEEEETTTCCEEEEEEC---SSSCCCEEEECTTSSEEEEESTTS-----EEEEEECCCCTTC
T ss_pred CCCEEEEEeCCC-----eEEEEECCCCCcceEEec---CCCCEEEEEECCCCCEEEEeeCCC-----CEEEEEEeccccc
Confidence 356666677543 588889877665443322 111222222233677888888654 4566665432100
Q ss_pred ee-ecCCCC-CCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee----c
Q 006334 117 RP-ECRGAP-PSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI----A 190 (650)
Q Consensus 117 ~l-~~~~~~-P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~----~ 190 (650)
.. ...... .....-..+....++..++.|+.+ ..+.+||+.+.+....- .+ ....-.++.+ +
T Consensus 142 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D-------~~v~lwd~~~~~~~~~~-~~----h~~~v~~~~~~~~~~ 209 (354)
T 2pbi_B 142 NMAAKKKSVAMHTNYLSACSFTNSDMQILTASGD-------GTCALWDVESGQLLQSF-HG----HGADVLCLDLAPSET 209 (354)
T ss_dssp CSGGGCEEEEECSSCEEEEEECSSSSEEEEEETT-------SEEEEEETTTCCEEEEE-EC----CSSCEEEEEECCCSS
T ss_pred cccccceeeeccCCcEEEEEEeCCCCEEEEEeCC-------CcEEEEeCCCCeEEEEE-cC----CCCCeEEEEEEeCCC
Confidence 00 000000 001111122223345556666653 35788898776543211 00 0011111111 3
Q ss_pred CEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEE--CCEEEEEeccCCCcccCeEEEEECCCCcE
Q 006334 191 NRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINI--GTKVYIIGGVGDKHYYNDIWILNVSTCSW 268 (650)
Q Consensus 191 ~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~--~~~IyI~GG~~~~~~~~dv~~yD~~t~~W 268 (650)
+.+++.|+.+ ..+..||+.+.+....- .. ......++.+ ++.+++.|+.++ .+.+||+.+..-
T Consensus 210 g~~l~sgs~D-----g~v~~wd~~~~~~~~~~---~~--h~~~v~~v~~~p~~~~l~s~s~D~-----~v~lwd~~~~~~ 274 (354)
T 2pbi_B 210 GNTFVSGGCD-----KKAMVWDMRSGQCVQAF---ET--HESDVNSVRYYPSGDAFASGSDDA-----TCRLYDLRADRE 274 (354)
T ss_dssp CCEEEEEETT-----SCEEEEETTTCCEEEEE---CC--CSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTTEE
T ss_pred CCEEEEEeCC-----CeEEEEECCCCcEEEEe---cC--CCCCeEEEEEeCCCCEEEEEeCCC-----eEEEEECCCCcE
Confidence 4677777765 47889999887654332 11 1111222222 456777777543 588899987654
Q ss_pred EEeecCCCCCCCcceeEEEEE--CCeEEEEcCCCCCCCCCCcEEEEecC
Q 006334 269 SQLDTCGQQPQGRFSHAAVVT--GSDIVIYGGCGEDERPLNELLVLQLG 315 (650)
Q Consensus 269 ~~l~~~~~~p~~R~~hsav~~--~~~lyV~GG~~~~~~~~~d~~~l~l~ 315 (650)
..+-. .........++.+ ++.+++.|+.+ ..+.++++.
T Consensus 275 ~~~~~---~~~~~~~~~~~~~s~~g~~l~~g~~d------~~i~vwd~~ 314 (354)
T 2pbi_B 275 VAIYS---KESIIFGASSVDFSLSGRLLFAGYND------YTINVWDVL 314 (354)
T ss_dssp EEEEC---CTTCCSCEEEEEECTTSSEEEEEETT------SCEEEEETT
T ss_pred EEEEc---CCCcccceeEEEEeCCCCEEEEEECC------CcEEEEECC
Confidence 33221 1111222233333 56677776632 356666664
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=92.20 E-value=5.4 Score=45.59 Aligned_cols=213 Identities=12% Similarity=0.082 Sum_probs=110.8
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCC---------cCcCeEEE
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGY---------KKVNDLHI 107 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~---------~~~ndv~~ 107 (650)
+++.++|+....+.....++++|+.++.+...... .......+..-+ +.++++..+.. .....+|+
T Consensus 173 DG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~----~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~ 247 (741)
T 1yr2_A 173 DGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELK----WVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWL 247 (741)
T ss_dssp TSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEE----EEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEE
T ss_pred CCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCC----CceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEE
Confidence 45555565443333335799999999987654221 011111112224 54445444322 12467999
Q ss_pred EECCCCcE--EeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCC--c-eeeccccCCCCCCCC
Q 006334 108 LDLESKEW--MRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTM--R-WASPAVKGDIPVPRD 182 (650)
Q Consensus 108 yD~~t~~W--~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~--~-Wt~i~~~~~lP~~R~ 182 (650)
+++.+..- ..+ ......+..........+++.+++..... ....+++|++|+.+. . |..+.. .....
T Consensus 248 ~~lgt~~~~~~lv--~~~~~~~~~~~~~~~SpDG~~l~~~~~~~--~~~~~~l~~~d~~~~~~~~~~~l~~---~~~~~- 319 (741)
T 1yr2_A 248 HRLGTPQSADQPV--FATPELPKRGHGASVSSDGRWVVITSSEG--TDPVNTVHVARVTNGKIGPVTALIP---DLKAQ- 319 (741)
T ss_dssp EETTSCGGGCEEE--ECCTTCTTCEEEEEECTTSCEEEEEEECT--TCSCCEEEEEEEETTEECCCEEEEC---SSSSC-
T ss_pred EECCCCchhCEEE--eccCCCCeEEEEEEECCCCCEEEEEEEcc--CCCcceEEEEECCCCCCcccEEecC---CCCce-
Confidence 99877642 122 11122223334444445665555444321 112568999999876 6 776541 11111
Q ss_pred cceeeeecCEEEEEeccCCCCccCeEEEEECCC--CcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEE
Q 006334 183 SHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNS--LTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWI 260 (650)
Q Consensus 183 ~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t--~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~ 260 (650)
.......++.||+..... .....++++|+.+ ..|..+-.. . ... -..+...++++++....+. ...+|.
T Consensus 320 ~~~~~~dg~~l~~~s~~~--~~~~~l~~~d~~~~~~~~~~l~~~--~-~~~-l~~~~~~~~~lv~~~~~dg---~~~l~~ 390 (741)
T 1yr2_A 320 WDFVDGVGDQLWFVSGDG--APLKKIVRVDLSGSTPRFDTVVPE--S-KDN-LESVGIAGNRLFASYIHDA---KSQVLA 390 (741)
T ss_dssp EEEEEEETTEEEEEECTT--CTTCEEEEEECSSSSCEEEEEECC--C-SSE-EEEEEEEBTEEEEEEEETT---EEEEEE
T ss_pred EEEEeccCCEEEEEECCC--CCCCEEEEEeCCCCccccEEEecC--C-CCe-EEEEEEECCEEEEEEEECC---EEEEEE
Confidence 111122356677765432 2346799999988 579887621 1 111 1223344778777754432 357899
Q ss_pred EECCCCcEEEe
Q 006334 261 LNVSTCSWSQL 271 (650)
Q Consensus 261 yD~~t~~W~~l 271 (650)
+|+....-..+
T Consensus 391 ~~~~g~~~~~l 401 (741)
T 1yr2_A 391 FDLDGKPAGAV 401 (741)
T ss_dssp EETTSCEEEEC
T ss_pred EeCCCCceeec
Confidence 99865544444
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=92.20 E-value=2.8 Score=43.38 Aligned_cols=199 Identities=11% Similarity=0.086 Sum_probs=96.1
Q ss_pred EEEEEccCCCCcccceEEEEECCCCcEEEeec-CCCCCCCCcceEEEEE-CCEEEEEcccCCCcCcCeEEEEECCCCcEE
Q 006334 39 AVYIFGGCCGGLHFGDVLMLNLDTMVWSTLAT-TGQGPGPRDSHSAILW-GHKMIVFGGTNGYKKVNDLHILDLESKEWM 116 (650)
Q Consensus 39 ~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~-~g~~P~pR~~hsa~~~-~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~ 116 (650)
.+++.|+.+ ..+.+||..+......-. .. ....-.+++.. ++.+++.|+.+ ..+.+||+.+.+-.
T Consensus 145 ~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~ 211 (402)
T 2aq5_A 145 NVLLSAGCD-----NVILVWDVGTGAAVLTLGPDV---HPDTIYSVDWSRDGALICTSCRD-----KRVRVIEPRKGTVV 211 (402)
T ss_dssp TEEEEEETT-----SCEEEEETTTTEEEEEECTTT---CCSCEEEEEECTTSSCEEEEETT-----SEEEEEETTTTEEE
T ss_pred CEEEEEcCC-----CEEEEEECCCCCccEEEecCC---CCCceEEEEECCCCCEEEEEecC-----CcEEEEeCCCCcee
Confidence 466666643 358899998876544321 11 11122233333 56777777654 46899999887644
Q ss_pred eeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee--cCEEE
Q 006334 117 RPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI--ANRLF 194 (650)
Q Consensus 117 ~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~--~~~Iy 194 (650)
..-.. ... ......+....++.+++.|.... .-..+.+||+.+..-..... .+.....-..+... ++.+|
T Consensus 212 ~~~~~-~~~-~~~~~~~~~~~~~~~l~~g~~~~----~d~~i~iwd~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~ 283 (402)
T 2aq5_A 212 AEKDR-PHE-GTRPVHAVFVSEGKILTTGFSRM----SERQVALWDTKHLEEPLSLQ--ELDTSSGVLLPFFDPDTNIVY 283 (402)
T ss_dssp EEEEC-SSC-SSSCCEEEECSTTEEEEEEECTT----CCEEEEEEETTBCSSCSEEE--ECCCCSSCEEEEEETTTTEEE
T ss_pred eeecc-CCC-CCcceEEEEcCCCcEEEEeccCC----CCceEEEEcCccccCCceEE--eccCCCceeEEEEcCCCCEEE
Confidence 32101 111 11123344445788777773110 12468889987643210000 11111111222222 34566
Q ss_pred EEeccCCCCccCeEEEEECCCCc--EEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCcEEEee
Q 006334 195 VYGGDCGDQYHGDIDMLDMNSLT--WSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLD 272 (650)
Q Consensus 195 v~GG~~~~~~~n~v~~yd~~t~~--W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~ 272 (650)
+.|+.+ ..+.+||+.+.+ ...+.... ....-.+++...+..+++.+ ...+.+|++.++..+.+.
T Consensus 284 ~~g~~d-----g~i~i~d~~~~~~~~~~l~~~~---~~~~v~~~~~sp~~~~~~s~------~~~~~~~~l~~~~~~~i~ 349 (402)
T 2aq5_A 284 LCGKGD-----SSIRYFEITSEAPFLHYLSMFS---SKESQRGMGYMPKRGLEVNK------CEIARFYKLHERKCEPIA 349 (402)
T ss_dssp EEETTC-----SCEEEEEECSSTTCEEEEEEEC---CSSCCSEEEECCGGGSCGGG------TEEEEEEEEETTEEEEEE
T ss_pred EEEcCC-----CeEEEEEecCCCcceEeecccc---cCCcccceEEecccccceec------ceeEEEEEcCCCcEEEEE
Confidence 666544 378888887766 44544321 11111222332332222222 125677777776665543
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=92.17 E-value=11 Score=38.09 Aligned_cols=73 Identities=8% Similarity=0.110 Sum_probs=38.6
Q ss_pred EEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEE--CC-EEEEEeccCCCcccCeEEEEEC--CCC
Q 006334 192 RLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINI--GT-KVYIIGGVGDKHYYNDIWILNV--STC 266 (650)
Q Consensus 192 ~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~--~~-~IyI~GG~~~~~~~~dv~~yD~--~t~ 266 (650)
.+|+.+..+ +.+.+||+.+.++..+......+........+.+ ++ .||+... . ..+.+.+|++ .+.
T Consensus 224 ~l~v~~~~~-----~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~-~---~~~~i~v~~~~~~~g 294 (361)
T 3scy_A 224 FAYLINEIG-----GTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNR-L---KADGVAIFKVDETNG 294 (361)
T ss_dssp EEEEEETTT-----CEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEEC-S---SSCEEEEEEECTTTC
T ss_pred EEEEEcCCC-----CeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECC-C---CCCEEEEEEEcCCCC
Confidence 466665322 5788898888877666543233322222233333 34 4555432 1 0235666666 467
Q ss_pred cEEEeec
Q 006334 267 SWSQLDT 273 (650)
Q Consensus 267 ~W~~l~~ 273 (650)
+++.+..
T Consensus 295 ~~~~~~~ 301 (361)
T 3scy_A 295 TLTKVGY 301 (361)
T ss_dssp CEEEEEE
T ss_pred cEEEeeE
Confidence 7776654
|
| >1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1 | Back alignment and structure |
|---|
Probab=92.13 E-value=4.6 Score=38.94 Aligned_cols=153 Identities=10% Similarity=0.083 Sum_probs=83.5
Q ss_pred EEEEECCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecC---CCCCCCCcccEEEEEc-CCEEEEEccccCCCCcccce
Q 006334 82 SAILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECR---GAPPSPRESHTATLVG-DDKMVIFGGSGEGEANYLND 157 (650)
Q Consensus 82 sa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~---~~~P~~R~~hs~~~~~-~~~Lyv~GG~~~~~~~~~~d 157 (650)
+++..++.+|+|=| +.+|+++.....+....+. ..+| ..--++.... ++++|+|-|. .
T Consensus 28 Ai~~~~g~~y~Fkg-------~~~wr~~~~~~~~~p~~I~~~wp~Lp--~~iDAa~~~~~~~~iyfFkG~---------~ 89 (207)
T 1pex_A 28 AITSLRGETMIFKD-------RFFWRLHPQQVDAELFLTKSFWPELP--NRIDAAYEHPSHDLIFIFRGR---------K 89 (207)
T ss_dssp EEEEETTEEEEEET-------TEEEEECSSSSCCEEEEHHHHCTTSC--SSCCEEEEETTTTEEEEEETT---------E
T ss_pred EEEeCCCcEEEEEC-------CEEEEEeCCCcCCCceehhHhccCCC--CCccEEEEeccCCcEEEEccC---------E
Confidence 34557899999977 4688887655443322111 1222 2233333333 6899999774 3
Q ss_pred EEEEecCCCce---eeccccCCCCCC--CCcceeeee-cCEEEEEeccCCCCccCeEEEEECCCCcEEE-----eee-cC
Q 006334 158 LHVLDLKTMRW---ASPAVKGDIPVP--RDSHSSNVI-ANRLFVYGGDCGDQYHGDIDMLDMNSLTWSR-----LAI-IG 225 (650)
Q Consensus 158 v~~yd~~t~~W---t~i~~~~~lP~~--R~~hs~v~~-~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~-----i~~-~g 225 (650)
+|+|+-.+..- ..|... .+|.. ....+.... ++++|+|-| +..|+||..+.+-.. +.. -.
T Consensus 90 ~w~~~~~~~~~gyPk~I~~~-GlP~~~~~IDAA~~~~~~gk~yfFkG-------~~ywr~d~~~~~~d~gyPr~i~~~~~ 161 (207)
T 1pex_A 90 FWALNGYDILEGYPKKISEL-GLPKEVKKISAAVHFEDTGKTLLFSG-------NQVWRYDDTNHIMDKDYPRLIEEDFP 161 (207)
T ss_dssp EEEESTTCCCTTCSEESTTT-TCCTTCCCCCEEEECTTTSEEEEEET-------TEEEEEETTTTEECSSCCCBHHHHST
T ss_pred EEEEeCCeeccCCceecccc-CCCCCCccccEEEEeCCCCEEEEEeC-------CEEEEEeCcCccccCCCCccHHHcCC
Confidence 78886332111 112211 23321 222222222 479999988 688999987653210 000 00
Q ss_pred CCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCcEE
Q 006334 226 SSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCSWS 269 (650)
Q Consensus 226 ~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~ 269 (650)
.+|. . -.++...++++|+|-| +..|+||..+++=.
T Consensus 162 Gip~-~-iDaAf~~~g~~YfFkg-------~~y~rf~~~~~~v~ 196 (207)
T 1pex_A 162 GIGD-K-VDAVYEKNGYIYFFNG-------PIQFEYSIWSNRIV 196 (207)
T ss_dssp TSCS-C-CSEEEEETTEEEEEET-------TEEEEEETTTTEEE
T ss_pred CCCC-C-ccEEEEcCCcEEEEEC-------CEEEEEeCCccEEe
Confidence 1221 2 2344456889999976 47899998776543
|
| >1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1 | Back alignment and structure |
|---|
Probab=92.12 E-value=2 Score=41.04 Aligned_cols=151 Identities=10% Similarity=0.109 Sum_probs=83.6
Q ss_pred EEEEECCEEEEEcccCCCcCcCeEEEEECCC--CcEEeeecC---CCCCCCCcccEEEEE-cCCEEEEEccccCCCCccc
Q 006334 82 SAILWGHKMIVFGGTNGYKKVNDLHILDLES--KEWMRPECR---GAPPSPRESHTATLV-GDDKMVIFGGSGEGEANYL 155 (650)
Q Consensus 82 sa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t--~~W~~l~~~---~~~P~~R~~hs~~~~-~~~~Lyv~GG~~~~~~~~~ 155 (650)
+++..++++|+|=| +.+|+++... .......++ ..+|. .--++... .++++|+|-|.
T Consensus 11 Ai~~~~g~~yfFkg-------~~~Wr~~~~~~~~~~~p~~Is~~w~glP~--~IDAa~~~~~~~~~yfFkG~-------- 73 (195)
T 1itv_A 11 AIAEIGNQLYLFKD-------GKYWRFSEGRGSRPQGPFLIADKWPALPR--KLDSVFEEPLSKKLFFFSGR-------- 73 (195)
T ss_dssp EEEEETTEEEEEET-------TEEEEECCSSSCCCEEEEEHHHHCTTSCS--SCSEEEECTTTCCEEEEETT--------
T ss_pred EEEEeCCEEEEEEC-------CEEEEEECCccccCCCcEEhhhccCCCCC--CccEEEEECCCCeEEEEeCC--------
Confidence 34557999999987 5788887755 223222121 12232 22333333 25789999774
Q ss_pred ceEEEEecCCCce-eeccccCCCCCC--CCcceeeeecCEEEEEeccCCCCccCeEEEEECCCCcEEE-----ee-ecCC
Q 006334 156 NDLHVLDLKTMRW-ASPAVKGDIPVP--RDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSR-----LA-IIGS 226 (650)
Q Consensus 156 ~dv~~yd~~t~~W-t~i~~~~~lP~~--R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~-----i~-~~g~ 226 (650)
..|+|+..+..- ..|..- .+|.. ....++...++++|+|-| +..|+||..+.+-.. +. .-..
T Consensus 74 -~yw~~~~~~~~~Pk~i~~~-G~p~~~~~iDAA~~~~~g~~yfFkg-------~~ywr~d~~~~~~~~gyPr~i~~~w~G 144 (195)
T 1itv_A 74 -QVWVYTGASVLGPRRLDKL-GLGADVAQVTGALRSGRGKMLLFSG-------RRLWRFDVKAQMVDPRSASEVDRMFPG 144 (195)
T ss_dssp -EEEEEETTEEEEEEEGGGG-TCCTTCCCCCEEEECSTTEEEEEET-------TEEEEEETTTTEECGGGCEEHHHHSTT
T ss_pred -EEEEEcCCccCCCEEeeec-ccCCCccceeEEEEcCCCeEEEEeC-------CEEEEEeCCcccccCCCccChhhcCCC
Confidence 377887532111 112111 23321 233333333689999988 678999987654211 11 0011
Q ss_pred CCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCc
Q 006334 227 SPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCS 267 (650)
Q Consensus 227 ~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~ 267 (650)
+| ..-.++...++.+|+|-| +..|+||..+..
T Consensus 145 vp--~~idaa~~~~g~~Yffkg-------~~y~~~~~~~~~ 176 (195)
T 1itv_A 145 VP--LDTHDVFQFREKAYFCQD-------RFYWRVSSRSEL 176 (195)
T ss_dssp SC--SSCSEEEEETTEEEEEET-------TEEEEEECCTTC
T ss_pred CC--CCCCEEEEeCCeEEEEeC-------CEEEEEECCccE
Confidence 22 223445556789999977 478899987664
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=92.03 E-value=5.3 Score=45.04 Aligned_cols=153 Identities=10% Similarity=0.037 Sum_probs=73.9
Q ss_pred eEEEEECCC-CcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCC-CCC
Q 006334 104 DLHILDLES-KEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIP-VPR 181 (650)
Q Consensus 104 dv~~yD~~t-~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP-~~R 181 (650)
.++.+|+.+ .+-..+... ............ .+++.++++..+. .....+++++|+.+.+...+....... ...
T Consensus 264 ~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~-pDg~~l~~~~~~~--~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~ 338 (741)
T 2ecf_A 264 KLGVISPAEQAQTQWIDLG--KEQDIYLARVNW-RDPQHLSFQRQSR--DQKKLDLVEVTLASNQQRVLAHETSPTWVPL 338 (741)
T ss_dssp EEEEECSSTTCCCEEECCC--SCSSEEEEEEEE-EETTEEEEEEEET--TSSEEEEEEEETTTCCEEEEEEEECSSCCCC
T ss_pred EEEEEECCCCCceEEecCC--CCcceEEEEEEe-CCCCEEEEEEecc--cCCeEEEEEEECCCCceEEEEEcCCCCcCCc
Confidence 788999988 765554211 011222233444 5555555544322 122467999999888766543111100 000
Q ss_pred CcceeeeecCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEE--EEECC-EEEEEeccCCCcccCeE
Q 006334 182 DSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAA--INIGT-KVYIIGGVGDKHYYNDI 258 (650)
Q Consensus 182 ~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~--v~~~~-~IyI~GG~~~~~~~~dv 258 (650)
.......-++++++.+..++ ...+|.+|.... +..+.. . ....... ..-++ .|++.+. .+......+
T Consensus 339 ~~~~~~spdg~~~~~~~~~g---~~~l~~~~~~~~-~~~l~~---~--~~~v~~~~~~s~dg~~l~~~~~-~~~~~~~~l 408 (741)
T 2ecf_A 339 HNSLRFLDDGSILWSSERTG---FQHLYRIDSKGK-AAALTH---G--NWSVDELLAVDEKAGLAYFRAG-IESARESQI 408 (741)
T ss_dssp CSCCEECTTSCEEEEECTTS---SCEEEEECSSSC-EEESCC---S--SSCEEEEEEEETTTTEEEEEEC-SSCTTCBEE
T ss_pred CCceEECCCCeEEEEecCCC---ccEEEEEcCCCC-eeeeee---c--ceEEEeEeEEeCCCCEEEEEEe-CCCCceEEE
Confidence 11111122566666655433 357889987766 555541 1 1111122 23344 4555443 333234567
Q ss_pred EEEECCCCcEEEe
Q 006334 259 WILNVSTCSWSQL 271 (650)
Q Consensus 259 ~~yD~~t~~W~~l 271 (650)
|..+.....-..+
T Consensus 409 ~~~~~~g~~~~~l 421 (741)
T 2ecf_A 409 YAVPLQGGQPQRL 421 (741)
T ss_dssp EEEETTCCCCEEC
T ss_pred EEEEcCCCCeeec
Confidence 8777655444444
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=92.01 E-value=10 Score=37.77 Aligned_cols=184 Identities=13% Similarity=0.056 Sum_probs=92.3
Q ss_pred cceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccC------------------CC----cCcCeEEEE
Q 006334 52 FGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW-GHKMIVFGGTN------------------GY----KKVNDLHIL 108 (650)
Q Consensus 52 ~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~-~~~lyVfGG~~------------------~~----~~~ndv~~y 108 (650)
...+|++|..++....+... + . ....... +++.++|.... +. .....++++
T Consensus 84 ~~~l~~~~~~~g~~~~l~~~---~--~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 157 (347)
T 2gop_A 84 VSEIWVADLETLSSKKILEA---K--N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIF 157 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEE---S--E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEE
T ss_pred cceEEEEECCCCceEEEEcC---C--C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEE
Confidence 34699999998877766543 1 1 2222332 55545554422 10 113679999
Q ss_pred ECCCCcE-EeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCc--c-cceEEEEecCCCceeeccccCCCCCCCCcc
Q 006334 109 DLESKEW-MRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEAN--Y-LNDLHVLDLKTMRWASPAVKGDIPVPRDSH 184 (650)
Q Consensus 109 D~~t~~W-~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~--~-~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~h 184 (650)
|+.+.+. ..+.. + .........++ +++.+.... ... . ..++|.+| +..+..+... ....
T Consensus 158 d~~~~~~~~~l~~----~---~~~~~~~spdg-~~~~~~~~~-~~~~~~~~~~l~~~d--~~~~~~l~~~------~~~~ 220 (347)
T 2gop_A 158 DTESEEVIEEFEK----P---RFSSGIWHRDK-IVVNVPHRE-IIPQYFKFWDIYIWE--DGKEEKMFEK------VSFY 220 (347)
T ss_dssp ETTTTEEEEEEEE----E---TTCEEEEETTE-EEEEEECCC-SSCCSSCCEEEEEEE--TTEEEEEEEE------ESEE
T ss_pred ECCCCeEEeeecC----C---CcccccCCCCe-EEEEEeccc-ccccccccccEEEeC--CCceEEeccC------ccee
Confidence 9998887 55522 1 23344445555 555554421 111 2 45788888 6667655411 1111
Q ss_pred eeeeecCEEEEEeccCC---CCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEE
Q 006334 185 SSNVIANRLFVYGGDCG---DQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWIL 261 (650)
Q Consensus 185 s~v~~~~~Iyv~GG~~~---~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~y 261 (650)
.. .-+++.+++.+... ......++.+| +.++..+.. .. ...........+.+|+.+...+ ...+| +
T Consensus 221 ~~-spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~---~~-~~~~~~~~~~sdg~~~~~~~~~---~~~l~-~ 289 (347)
T 2gop_A 221 AV-DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILD---EV-DRGVGQAKIKDGKVYFTLFEEG---SVNLY-I 289 (347)
T ss_dssp EE-EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESST---TC-CSEEEEEEEETTEEEEEEEETT---EEEEE-E
T ss_pred eE-CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccc---cC-CcccCCccEEcCcEEEEEecCC---cEEEE-E
Confidence 22 33454444444222 12346799999 666666541 11 1111211222244666654433 34677 7
Q ss_pred ECCCCcEEEe
Q 006334 262 NVSTCSWSQL 271 (650)
Q Consensus 262 D~~t~~W~~l 271 (650)
+ +.....+
T Consensus 290 ~--~g~~~~~ 297 (347)
T 2gop_A 290 W--DGEIKPI 297 (347)
T ss_dssp E--SSSEEEE
T ss_pred c--CCceEEE
Confidence 7 4555544
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.99 E-value=10 Score=37.52 Aligned_cols=187 Identities=13% Similarity=0.080 Sum_probs=91.5
Q ss_pred CEEEEEccCCCCcccceEEEEECCCCcEEE-eecCCCCCCCCcceEEEEE-CCEEEEEcccCCCcCcCeEEEEECCCCcE
Q 006334 38 GAVYIFGGCCGGLHFGDVLMLNLDTMVWST-LATTGQGPGPRDSHSAILW-GHKMIVFGGTNGYKKVNDLHILDLESKEW 115 (650)
Q Consensus 38 ~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~-l~~~g~~P~pR~~hsa~~~-~~~lyVfGG~~~~~~~ndv~~yD~~t~~W 115 (650)
+.+++.|+.+ ..+.+||..+..... ....+. ...-.++.+. ++++++.|+.+ ..+.++|..+.+.
T Consensus 54 g~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~h---~~~v~~~~~~~~~~~l~s~~~d-----g~v~iwd~~~~~~ 120 (368)
T 3mmy_A 54 GNFLIAGSWA-----NDVRCWEVQDSGQTIPKAQQMH---TGPVLDVCWSDDGSKVFTASCD-----KTAKMWDLSSNQA 120 (368)
T ss_dssp SEEEEEEETT-----SEEEEEEECTTSCEEEEEEEEC---SSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTTEE
T ss_pred ceEEEEECCC-----CcEEEEEcCCCCceeEEEeccc---cCCEEEEEECcCCCEEEEEcCC-----CcEEEEEcCCCCc
Confidence 3788888754 358888887632222 111100 1111222332 56677777654 3688899988876
Q ss_pred EeeecCCCCCCCCcccEEEE--EcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeeecCEE
Q 006334 116 MRPECRGAPPSPRESHTATL--VGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRL 193 (650)
Q Consensus 116 ~~l~~~~~~P~~R~~hs~~~--~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~~~~I 193 (650)
..+... ...-.++.. ..++.+++.|+.+ ..+.+||+.+.+-... +.......+.....+.+
T Consensus 121 ~~~~~~-----~~~v~~~~~~~~~~~~~l~~~~~d-------g~i~vwd~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 183 (368)
T 3mmy_A 121 IQIAQH-----DAPVKTIHWIKAPNYSCVMTGSWD-------KTLKFWDTRSSNPMMV-----LQLPERCYCADVIYPMA 183 (368)
T ss_dssp EEEEEC-----SSCEEEEEEEECSSCEEEEEEETT-------SEEEEECSSCSSCSEE-----EECSSCEEEEEEETTEE
T ss_pred eeeccc-----cCceEEEEEEeCCCCCEEEEccCC-------CcEEEEECCCCcEEEE-----EecCCCceEEEecCCee
Confidence 554211 111223333 3467778888763 3588899876543221 11111222233334544
Q ss_pred EEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECC----EEEEEeccCCCcccCeEEEEECCCC
Q 006334 194 FVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGT----KVYIIGGVGDKHYYNDIWILNVSTC 266 (650)
Q Consensus 194 yv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~----~IyI~GG~~~~~~~~dv~~yD~~t~ 266 (650)
++.++ + +.+..||.....-...... ................ ..++.|+.+ ..+.+||+...
T Consensus 184 ~~~~~-~-----~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-----g~i~i~~~~~~ 248 (368)
T 3mmy_A 184 VVATA-E-----RGLIVYQLENQPSEFRRIE-SPLKHQHRCVAIFKDKQNKPTGFALGSIE-----GRVAIHYINPP 248 (368)
T ss_dssp EEEEG-G-----GCEEEEECSSSCEEEEECC-CSCSSCEEEEEEEECTTSCEEEEEEEETT-----SEEEEEESSCS
T ss_pred EEEeC-C-----CcEEEEEeccccchhhhcc-ccccCCCceEEEcccCCCCCCeEEEecCC-----CcEEEEecCCC
Confidence 44433 2 4678888776542222211 1111111122222221 336665543 35778888765
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=91.95 E-value=11 Score=37.63 Aligned_cols=191 Identities=13% Similarity=0.072 Sum_probs=99.4
Q ss_pred cccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCc
Q 006334 50 LHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRE 129 (650)
Q Consensus 50 ~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~ 129 (650)
.....+|++|..+.....+. ........-+++.++|...........+|.+|+.+.+...+... + .
T Consensus 40 ~~~~~l~~~d~~~~~~~~l~--------~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~---~--~- 105 (347)
T 2gop_A 40 KYENTIVIENLKNNARRFIE--------NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA---K--N- 105 (347)
T ss_dssp EEEEEEEEEETTTCCEEEEE--------SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE---S--E-
T ss_pred CccceEEEEeCCCCceEEcc--------cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC---C--C-
Confidence 34578999999988766551 11122222356555554432222345699999998877665221 1 1
Q ss_pred ccEEEEEcCCEEEEEccccCC----------------C----CcccceEEEEecCCCce-eeccccCCCCCCCCcceeee
Q 006334 130 SHTATLVGDDKMVIFGGSGEG----------------E----ANYLNDLHVLDLKTMRW-ASPAVKGDIPVPRDSHSSNV 188 (650)
Q Consensus 130 ~hs~~~~~~~~Lyv~GG~~~~----------------~----~~~~~dv~~yd~~t~~W-t~i~~~~~lP~~R~~hs~v~ 188 (650)
........+++.+++...... . ......++++|+.++.. ..+.. + .......
T Consensus 106 ~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~----~---~~~~~~~ 178 (347)
T 2gop_A 106 IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK----P---RFSSGIW 178 (347)
T ss_dssp EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE----E---TTCEEEE
T ss_pred ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC----C---CcccccC
Confidence 222333335554444432100 0 01135789999988876 55441 1 2223333
Q ss_pred ecCEEEEEeccCCCC---c-cCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCC---CcccCeEEEE
Q 006334 189 IANRLFVYGGDCGDQ---Y-HGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGD---KHYYNDIWIL 261 (650)
Q Consensus 189 ~~~~Iyv~GG~~~~~---~-~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~---~~~~~dv~~y 261 (650)
..+.+++.+...... . ...+|.+| +.++..+... ........+++.+++.+... .....++|.+
T Consensus 179 spdg~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~-------~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~ 249 (347)
T 2gop_A 179 HRDKIVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK-------VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIY 249 (347)
T ss_dssp ETTEEEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE-------ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEE
T ss_pred CCCeEEEEEecccccccccccccEEEeC--CCceEEeccC-------cceeeECCCCCEEEEEEccccCCccccceEEEE
Confidence 344454444333211 2 45889999 7777776531 11222255665444444332 1234689999
Q ss_pred ECCCCcEEEee
Q 006334 262 NVSTCSWSQLD 272 (650)
Q Consensus 262 D~~t~~W~~l~ 272 (650)
| +.++..+.
T Consensus 250 d--~~~~~~l~ 258 (347)
T 2gop_A 250 D--GKEVMGIL 258 (347)
T ss_dssp C--SSCEEESS
T ss_pred C--CCceEecc
Confidence 9 66776664
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=91.81 E-value=21 Score=40.65 Aligned_cols=190 Identities=11% Similarity=0.037 Sum_probs=101.3
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEECCCCcEE
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESKEWM 116 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~ 116 (650)
++.|||.. .+-+++||..+.++... .. . ....-.++...++.|||.. .+.+++||..+++++
T Consensus 73 ~g~lWigT-------~~Gl~~yd~~~~~f~~~-~~-~--~~~~i~~i~~~~g~lWigt-------~~Gl~~~~~~~~~~~ 134 (758)
T 3ott_A 73 NTYLYMGT-------DNGILVYNYRADRYEQP-ET-D--FPTDVRTMALQGDTLWLGA-------LNGLYTYQLQSRKLT 134 (758)
T ss_dssp TTEEEEEE-------TTEEEEEETTTTEECCC-SC-C--CCSCEEEEEEETTEEEEEE-------TTEEEEEETTTCCEE
T ss_pred CCcEEEEe-------CCCeEEEeCCCCEEECc-cc-C--CCceEEEEEecCCcEEEEc-------CCcceeEeCCCCeEE
Confidence 46777733 23589999999877641 11 1 1111123334578888732 136899999998887
Q ss_pred eeecC-CCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCC-CCcceeeeec--CE
Q 006334 117 RPECR-GAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVP-RDSHSSNVIA--NR 192 (650)
Q Consensus 117 ~l~~~-~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~-R~~hs~v~~~--~~ 192 (650)
.+... ...+. ..-.++....++.|+|. .. +-+++||..++++..+......... ..-.++.... +.
T Consensus 135 ~~~~~~~~l~~-~~i~~i~~d~~g~lWig--t~-------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~ 204 (758)
T 3ott_A 135 SFDTRRNGLPN-NTIYSIIRTKDNQIYVG--TY-------NGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQC 204 (758)
T ss_dssp EECHHHHCCSC-SCEEEEEECTTCCEEEE--ET-------TEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTE
T ss_pred EeccCCCCcCC-CeEEEEEEcCCCCEEEE--eC-------CCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCE
Confidence 65211 11111 11223333336778872 21 2488999988887654311110000 0111222222 34
Q ss_pred EEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEE-CCEEEEEeccCCCcccCeEEEEECCCCcEEEe
Q 006334 193 LFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINI-GTKVYIIGGVGDKHYYNDIWILNVSTCSWSQL 271 (650)
Q Consensus 193 Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~-~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l 271 (650)
|+|.. . ..+++||+.+.++..+.. ++. ..-.+++.. ++.|+|-- . .-+++||..+..+..+
T Consensus 205 lWigt--~-----~Gl~~~~~~~~~~~~~~~---l~~-~~i~~i~~d~~g~lWigT--~-----~Gl~~~~~~~~~~~~~ 266 (758)
T 3ott_A 205 VWIGT--E-----GYLFQYFPSTGQIKQTEA---FHN-NSIKSLALDGNGDLLAGT--D-----NGLYVYHNDTTPLQHI 266 (758)
T ss_dssp EEEEE--E-----EEEEEEETTTTEEEEEEE---EEE-EEEEEEEECTTCCEEEEE--T-----TEEEEECCTTSCCEEE
T ss_pred EEEEE--C-----CCCeEEcCCCCeEEeccC---CCC-CeEEEEEEcCCCCEEEEe--C-----CceeEEecCCCcEEEE
Confidence 67632 1 358999999988876542 111 111222222 34666642 1 3588999998888766
Q ss_pred e
Q 006334 272 D 272 (650)
Q Consensus 272 ~ 272 (650)
.
T Consensus 267 ~ 267 (758)
T 3ott_A 267 I 267 (758)
T ss_dssp C
T ss_pred E
Confidence 4
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.77 E-value=8.7 Score=37.25 Aligned_cols=148 Identities=9% Similarity=0.094 Sum_probs=73.8
Q ss_pred CCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCC
Q 006334 87 GHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTM 166 (650)
Q Consensus 87 ~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~ 166 (650)
++.+++.|+.++ .+..||.... -..+ .........++....++. ++.|+.+ ..+.+||+.+.
T Consensus 154 ~~~~l~~~~~d~-----~i~i~d~~~~-~~~~----~~~~~~~i~~~~~~~~~~-~~~~~~d-------g~i~i~d~~~~ 215 (313)
T 3odt_A 154 SENKFLTASADK-----TIKLWQNDKV-IKTF----SGIHNDVVRHLAVVDDGH-FISCSND-------GLIKLVDMHTG 215 (313)
T ss_dssp TTTEEEEEETTS-----CEEEEETTEE-EEEE----CSSCSSCEEEEEEEETTE-EEEEETT-------SEEEEEETTTC
T ss_pred CCCEEEEEECCC-----CEEEEecCce-EEEE----eccCcccEEEEEEcCCCe-EEEccCC-------CeEEEEECCch
Confidence 566677776543 4777773221 1111 111222233444445667 6666653 35888998765
Q ss_pred ceeeccccCCCCCCCCcceeeeecCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEE-ECCEEEE
Q 006334 167 RWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAIN-IGTKVYI 245 (650)
Q Consensus 167 ~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~-~~~~IyI 245 (650)
+-...- . .. ...-.++....+..++.|+.+ +.+..||+.+.+....-. .+... -.+++. .+++ ++
T Consensus 216 ~~~~~~-~-~~--~~~i~~~~~~~~~~l~~~~~d-----g~v~iwd~~~~~~~~~~~---~~~~~-i~~~~~~~~~~-~~ 281 (313)
T 3odt_A 216 DVLRTY-E-GH--ESFVYCIKLLPNGDIVSCGED-----RTVRIWSKENGSLKQVIT---LPAIS-IWSVDCMSNGD-II 281 (313)
T ss_dssp CEEEEE-E-CC--SSCEEEEEECTTSCEEEEETT-----SEEEEECTTTCCEEEEEE---CSSSC-EEEEEECTTSC-EE
T ss_pred hhhhhh-h-cC--CceEEEEEEecCCCEEEEecC-----CEEEEEECCCCceeEEEe---ccCce-EEEEEEccCCC-EE
Confidence 432211 0 10 111122223222235566644 479999988876544331 11111 122222 2445 45
Q ss_pred EeccCCCcccCeEEEEECCCCcEEEe
Q 006334 246 IGGVGDKHYYNDIWILNVSTCSWSQL 271 (650)
Q Consensus 246 ~GG~~~~~~~~dv~~yD~~t~~W~~l 271 (650)
.|+.+ ..+.+||+.+..|...
T Consensus 282 ~~~~d-----g~i~iw~~~~~~~~~~ 302 (313)
T 3odt_A 282 VGSSD-----NLVRIFSQEKSRWASE 302 (313)
T ss_dssp EEETT-----SCEEEEESCGGGCCC-
T ss_pred EEeCC-----CcEEEEeCCCCceeeh
Confidence 56543 3689999988876543
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=91.77 E-value=7.9 Score=42.65 Aligned_cols=234 Identities=13% Similarity=0.137 Sum_probs=112.7
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CC-EEEEEcccCCCcCcCeEEEEEC--CC
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW-GH-KMIVFGGTNGYKKVNDLHILDL--ES 112 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~-~~-~lyVfGG~~~~~~~ndv~~yD~--~t 112 (650)
++.+|+.+.. .+.+.++|..+.+....-..+. .-|.+++. ++ .||+.+ .+ +.+.+||+ .+
T Consensus 148 ~~~~~vs~~~-----d~~V~v~D~~t~~~~~~i~~g~-----~~~~v~~spdg~~l~v~~-~d-----~~V~v~D~~~~t 211 (543)
T 1nir_A 148 PNLFSVTLRD-----AGQIALVDGDSKKIVKVIDTGY-----AVHISRMSASGRYLLVIG-RD-----ARIDMIDLWAKE 211 (543)
T ss_dssp GGEEEEEEGG-----GTEEEEEETTTCCEEEEEECST-----TEEEEEECTTSCEEEEEE-TT-----SEEEEEETTSSS
T ss_pred CCEEEEEEcC-----CCeEEEEECCCceEEEEEecCc-----ccceEEECCCCCEEEEEC-CC-----CeEEEEECcCCC
Confidence 5778877653 3478899999887544332222 14555443 44 555544 32 67999999 66
Q ss_pred CcEEeeecCCCCCCCCcccEEEEEc----CCEEEEEccccCCCCcccceEEEEecCCCceee-ccccCC-------CCCC
Q 006334 113 KEWMRPECRGAPPSPRESHTATLVG----DDKMVIFGGSGEGEANYLNDLHVLDLKTMRWAS-PAVKGD-------IPVP 180 (650)
Q Consensus 113 ~~W~~l~~~~~~P~~R~~hs~~~~~----~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~-i~~~~~-------lP~~ 180 (650)
.+-... .+....-..+++.. +++.++++.+. -+.+.++|..+.+-.. +...+. .+.+
T Consensus 212 ~~~~~~-----i~~g~~p~~va~sp~~~~dg~~l~v~~~~------~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~ 280 (543)
T 1nir_A 212 PTKVAE-----IKIGIEARSVESSKFKGYEDRYTIAGAYW------PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEP 280 (543)
T ss_dssp CEEEEE-----EECCSEEEEEEECCSTTCTTTEEEEEEEE------SSEEEEEETTTCCEEEEEECCEECSSSCCEESCC
T ss_pred CcEEEE-----EecCCCcceEEeCCCcCCCCCEEEEEEcc------CCeEEEEeccccccceeecccCcccCccccccCC
Confidence 543221 11122223344444 56555555542 2457788877654322 111000 0111
Q ss_pred CCcceeeee-cCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEE-ECCE-EEEEeccCCCcccCe
Q 006334 181 RDSHSSNVI-ANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAIN-IGTK-VYIIGGVGDKHYYND 257 (650)
Q Consensus 181 R~~hs~v~~-~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~-~~~~-IyI~GG~~~~~~~~d 257 (650)
|....+... +..+|+.... .+.++.+|..+.+-..+... +..+.-+.++. -+++ +|+.+. ..+.
T Consensus 281 ~v~~i~~s~~~~~~~vs~~~-----~g~i~vvd~~~~~~l~~~~i---~~~~~~~~~~~spdg~~l~va~~-----~~~~ 347 (543)
T 1nir_A 281 RVAAIIASHEHPEFIVNVKE-----TGKVLLVNYKDIDNLTVTSI---GAAPFLHDGGWDSSHRYFMTAAN-----NSNK 347 (543)
T ss_dssp CEEEEEECSSSSEEEEEETT-----TTEEEEEECTTSSSCEEEEE---ECCSSCCCEEECTTSCEEEEEEG-----GGTE
T ss_pred ceEEEEECCCCCEEEEEECC-----CCeEEEEEecCCCcceeEEe---ccCcCccCceECCCCCEEEEEec-----CCCe
Confidence 222222222 3445544322 26889999876432111111 11222233333 2444 554432 2357
Q ss_pred EEEEECCCCcEEEeecCCCCCCCcceeEEEEE--CCeEEEEcCCCCCCCCCCcEEEEecCC
Q 006334 258 IWILNVSTCSWSQLDTCGQQPQGRFSHAAVVT--GSDIVIYGGCGEDERPLNELLVLQLGA 316 (650)
Q Consensus 258 v~~yD~~t~~W~~l~~~~~~p~~R~~hsav~~--~~~lyV~GG~~~~~~~~~d~~~l~l~~ 316 (650)
+.++|+++++-...-..+..|.+..+.. ... ++.+|+.+...+ +.+.+++++.
T Consensus 348 v~v~D~~tg~l~~~i~~g~~ph~g~g~~-~~~p~~g~~~~s~~~~d-----~~V~v~d~~~ 402 (543)
T 1nir_A 348 VAVIDSKDRRLSALVDVGKTPHPGRGAN-FVHPKYGPVWSTSHLGD-----GSISLIGTDP 402 (543)
T ss_dssp EEEEETTTTEEEEEEECSSSBCCTTCEE-EEETTTEEEEEEEBSSS-----SEEEEEECCT
T ss_pred EEEEECCCCeEEEeeccCCCCCCCCCcc-cCCCCCccEEEeccCCC-----ceEEEEEeCC
Confidence 8889999987554333333343322222 223 256777654321 3466666653
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=91.76 E-value=3.4 Score=42.80 Aligned_cols=197 Identities=9% Similarity=0.045 Sum_probs=96.0
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCcEE-----EeecCCCCCCCCcceEEEEE-CC-EEEEEcccCCCcCcCeEEEEE
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMVWS-----TLATTGQGPGPRDSHSAILW-GH-KMIVFGGTNGYKKVNDLHILD 109 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~-----~l~~~g~~P~pR~~hsa~~~-~~-~lyVfGG~~~~~~~ndv~~yD 109 (650)
++.+++.|+.+ ..+.+||..++.+. .+.... .....-.++.+. ++ .+++.|+.++ .+.++|
T Consensus 93 ~~~~l~s~s~d-----g~v~vw~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~p~~~~~l~s~~~dg-----~i~iwd 160 (402)
T 2aq5_A 93 NDNVIASGSED-----CTVMVWEIPDGGLVLPLREPVITLE--GHTKRVGIVAWHPTAQNVLLSAGCDN-----VILVWD 160 (402)
T ss_dssp CTTEEEEEETT-----SEEEEEECCTTCCSSCBCSCSEEEE--CCSSCEEEEEECSSBTTEEEEEETTS-----CEEEEE
T ss_pred CCCEEEEEeCC-----CeEEEEEccCCCCccccCCceEEec--CCCCeEEEEEECcCCCCEEEEEcCCC-----EEEEEE
Confidence 45666667643 35888888776431 111100 001111223333 33 5777777643 588999
Q ss_pred CCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeee-
Q 006334 110 LESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNV- 188 (650)
Q Consensus 110 ~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~- 188 (650)
+.+.+....-. .......-.++....++.+++.|+.+ ..+.+||+.+.+-...-.. . ........++.
T Consensus 161 ~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-------~~i~iwd~~~~~~~~~~~~-~-~~~~~~~~~~~~ 229 (402)
T 2aq5_A 161 VGTGAAVLTLG--PDVHPDTIYSVDWSRDGALICTSCRD-------KRVRVIEPRKGTVVAEKDR-P-HEGTRPVHAVFV 229 (402)
T ss_dssp TTTTEEEEEEC--TTTCCSCEEEEEECTTSSCEEEEETT-------SEEEEEETTTTEEEEEEEC-S-SCSSSCCEEEEC
T ss_pred CCCCCccEEEe--cCCCCCceEEEEECCCCCEEEEEecC-------CcEEEEeCCCCceeeeecc-C-CCCCcceEEEEc
Confidence 98886654210 01112222334444467777777763 3688999887654321100 1 11111122222
Q ss_pred ecCEEEEEeccCCCCccCeEEEEECCCCcE--EEeeecCCCCCcccceEEEEE-CC-EEEEEeccCCCcccCeEEEEECC
Q 006334 189 IANRLFVYGGDCGDQYHGDIDMLDMNSLTW--SRLAIIGSSPGVRAGHAAINI-GT-KVYIIGGVGDKHYYNDIWILNVS 264 (650)
Q Consensus 189 ~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W--~~i~~~g~~P~~R~~~s~v~~-~~-~IyI~GG~~~~~~~~dv~~yD~~ 264 (650)
-++.+++.|... .....+.+||+.+..- .... ........+++.. ++ .+++.|+.+ ..+.+||+.
T Consensus 230 ~~~~~l~~g~~~--~~d~~i~iwd~~~~~~~~~~~~----~~~~~~v~~~~~s~~~~~l~~~g~~d-----g~i~i~d~~ 298 (402)
T 2aq5_A 230 SEGKILTTGFSR--MSERQVALWDTKHLEEPLSLQE----LDTSSGVLLPFFDPDTNIVYLCGKGD-----SSIRYFEIT 298 (402)
T ss_dssp STTEEEEEEECT--TCCEEEEEEETTBCSSCSEEEE----CCCCSSCEEEEEETTTTEEEEEETTC-----SCEEEEEEC
T ss_pred CCCcEEEEeccC--CCCceEEEEcCccccCCceEEe----ccCCCceeEEEEcCCCCEEEEEEcCC-----CeEEEEEec
Confidence 256777766210 1125788999876432 1111 1111112223332 33 556666433 368888888
Q ss_pred CCc
Q 006334 265 TCS 267 (650)
Q Consensus 265 t~~ 267 (650)
+..
T Consensus 299 ~~~ 301 (402)
T 2aq5_A 299 SEA 301 (402)
T ss_dssp SST
T ss_pred CCC
Confidence 765
|
| >1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A | Back alignment and structure |
|---|
Probab=91.76 E-value=8.6 Score=37.31 Aligned_cols=153 Identities=16% Similarity=0.170 Sum_probs=82.6
Q ss_pred EEEEECCEEEEEccCCCCcccceEEEEECCCC-cEEEeecCC---CCCCCCcceEEEE-ECCEEEEEcccCCCcCcCeEE
Q 006334 32 SACYSHGAVYIFGGCCGGLHFGDVLMLNLDTM-VWSTLATTG---QGPGPRDSHSAIL-WGHKMIVFGGTNGYKKVNDLH 106 (650)
Q Consensus 32 s~v~~~~~IyvfGG~~~~~~~~dv~~yD~~t~-sW~~l~~~g---~~P~pR~~hsa~~-~~~~lyVfGG~~~~~~~ndv~ 106 (650)
+++.+++.+|+|=| +.+|+++.... ......... ..|. ...++... .++++|+|=| +.+|
T Consensus 35 Ai~~~~g~~~fFkg-------~~~Wr~~~~~~~~~~P~~I~~~wp~lp~-~IDAA~~~~~~~k~yfFkG-------~~yW 99 (218)
T 1gen_A 35 GIAQIRGEIFFFKD-------RFIWRTVTPRDKPMGPLLVATFWPELPE-KIDAVYEAPQEEKAVFFAG-------NEYW 99 (218)
T ss_dssp EEEEETTEEEEEET-------TEEEEESSTTSCCEEEEEGGGTCTTSCS-CCSEEEEETTTTEEEEEET-------TEEE
T ss_pred EEEeCCCcEEEEEC-------CEEEEEeCCCCccCCCEEHHHhcCCCCC-CccEEEEECCCCEEEEEeC-------CEEE
Confidence 45567899999988 36888876542 232222211 1121 22222222 2589999987 6789
Q ss_pred EEECCCCc---EEeeecCCCCCCCCcccEEEEE-cCCEEEEEccccCCCCcccceEEEEecCCCceee-----cc-ccCC
Q 006334 107 ILDLESKE---WMRPECRGAPPSPRESHTATLV-GDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWAS-----PA-VKGD 176 (650)
Q Consensus 107 ~yD~~t~~---W~~l~~~~~~P~~R~~hs~~~~-~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~-----i~-~~~~ 176 (650)
+||..+.. =+.+..-+-+.....-.++... .++++|+|-|. ..|+||..+++-.. +. .-..
T Consensus 100 ~y~~~~~~~gyPk~I~~~g~p~~~~~IDAAf~~~~~g~~YfFkG~---------~ywr~d~~~~~v~~gyPr~i~~~w~g 170 (218)
T 1gen_A 100 IYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAGD---------KFWRYNEVKKKMDPGFPKLIADAWNA 170 (218)
T ss_dssp EEETTEECTTCSEEGGGGTCCTTCCCCSEEEEETTTTEEEEEETT---------EEEEEETTTTEECSSCCEEHHHHSSS
T ss_pred EEcCccccCCCCccHhhcCCCCCcCCccEEEEEcCCCeEEEEECC---------EEEEEECccccccCCCCcchhhccCC
Confidence 99853110 0112111111111223444443 46899999774 48899986653321 10 0012
Q ss_pred CCCCCCcceeeeec--CEEEEEeccCCCCccCeEEEEECCCCc
Q 006334 177 IPVPRDSHSSNVIA--NRLFVYGGDCGDQYHGDIDMLDMNSLT 217 (650)
Q Consensus 177 lP~~R~~hs~v~~~--~~Iyv~GG~~~~~~~n~v~~yd~~t~~ 217 (650)
+| ..-.++...+ +.+|+|-| +..|+||..+..
T Consensus 171 ~p--~~idaAf~~~~~g~~YfFkg-------~~y~~~~~~~~~ 204 (218)
T 1gen_A 171 IP--DNLDAVVDLQGGGHSYFFKG-------AYYLKLENQSLK 204 (218)
T ss_dssp CC--SSCSEEEECTTTCEEEEEET-------TEEEEEETTEEE
T ss_pred CC--CCCCEEEEEcCCCcEEEEEC-------CEEEEEECCcee
Confidence 22 2233444444 89999988 678999876554
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=91.72 E-value=11 Score=37.23 Aligned_cols=194 Identities=8% Similarity=0.069 Sum_probs=94.7
Q ss_pred CEEEEEccCCCCcccceEEEEECCCCcE-EEeecCCCCCCCCcceEEEEE-CC-EEEEEcccCCCcCcCeEEEEECCCCc
Q 006334 38 GAVYIFGGCCGGLHFGDVLMLNLDTMVW-STLATTGQGPGPRDSHSAILW-GH-KMIVFGGTNGYKKVNDLHILDLESKE 114 (650)
Q Consensus 38 ~~IyvfGG~~~~~~~~dv~~yD~~t~sW-~~l~~~g~~P~pR~~hsa~~~-~~-~lyVfGG~~~~~~~ndv~~yD~~t~~ 114 (650)
..||+.+... +.+++||+.++.. ......+. ...+++++. ++ .|| .+... .....+++||+.+.+
T Consensus 52 ~~l~~~~~~~-----~~i~~~d~~~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~-~~~~~--~~~~~i~v~d~~~~~ 119 (331)
T 3u4y_A 52 SNVVVTSDFC-----QTLVQIETQLEPPKVVAIQEGQ----SSMADVDITPDDQFAV-TVTGL--NHPFNMQSYSFLKNK 119 (331)
T ss_dssp CEEEEEESTT-----CEEEEEECSSSSCEEEEEEECS----SCCCCEEECTTSSEEE-ECCCS--SSSCEEEEEETTTTE
T ss_pred CEEEEEeCCC-----CeEEEEECCCCceeEEecccCC----CCccceEECCCCCEEE-EecCC--CCcccEEEEECCCCC
Confidence 3577665522 3799999988774 22222211 112313333 33 455 33221 112379999999887
Q ss_pred EEeeecCCCCCCCCcccEEEEEcCCE-EEEEccccCCCCcccce-EEEEecCCCc-eeeccccCCCCCCCCcceeeee-c
Q 006334 115 WMRPECRGAPPSPRESHTATLVGDDK-MVIFGGSGEGEANYLND-LHVLDLKTMR-WASPAVKGDIPVPRDSHSSNVI-A 190 (650)
Q Consensus 115 W~~l~~~~~~P~~R~~hs~~~~~~~~-Lyv~GG~~~~~~~~~~d-v~~yd~~t~~-Wt~i~~~~~lP~~R~~hs~v~~-~ 190 (650)
....-.. ....+.+++..+++ ||+.+... +. +++|++.... ..... ...++....-..++.. +
T Consensus 120 ~~~~~~~-----~~~~~~~~~spdg~~l~~~~~~~-------~~~i~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~spd 186 (331)
T 3u4y_A 120 FISTIPI-----PYDAVGIAISPNGNGLILIDRSS-------ANTVRRFKIDADGVLFDTG-QEFISGGTRPFNITFTPD 186 (331)
T ss_dssp EEEEEEC-----CTTEEEEEECTTSSCEEEEEETT-------TTEEEEEEECTTCCEEEEE-EEEECSSSSEEEEEECTT
T ss_pred eEEEEEC-----CCCccceEECCCCCEEEEEecCC-------CceEEEEEECCCCcEeecC-CccccCCCCccceEECCC
Confidence 6543111 11224555555554 66654431 23 6666654321 11100 0011111111222322 3
Q ss_pred C-EEEEEeccCCCCccCeEEEEECCCCcE----EEeeecCCCCCcccceEEEE-ECC-EEEEEeccCCCcccCeEEEEEC
Q 006334 191 N-RLFVYGGDCGDQYHGDIDMLDMNSLTW----SRLAIIGSSPGVRAGHAAIN-IGT-KVYIIGGVGDKHYYNDIWILNV 263 (650)
Q Consensus 191 ~-~Iyv~GG~~~~~~~n~v~~yd~~t~~W----~~i~~~g~~P~~R~~~s~v~-~~~-~IyI~GG~~~~~~~~dv~~yD~ 263 (650)
+ .+|+.+..+ +.+.+||+.+.+. ..+. .+ .....++. -++ .+|+... ..+.+++||+
T Consensus 187 g~~l~v~~~~~-----~~v~v~d~~~~~~~~~~~~~~-~~-----~~~~~~~~spdg~~l~v~~~-----~~~~i~~~d~ 250 (331)
T 3u4y_A 187 GNFAFVANLIG-----NSIGILETQNPENITLLNAVG-TN-----NLPGTIVVSRDGSTVYVLTE-----STVDVFNFNQ 250 (331)
T ss_dssp SSEEEEEETTT-----TEEEEEECSSTTSCEEEEEEE-CS-----SCCCCEEECTTSSEEEEECS-----SEEEEEEEET
T ss_pred CCEEEEEeCCC-----CeEEEEECCCCcccceeeecc-CC-----CCCceEEECCCCCEEEEEEc-----CCCEEEEEEC
Confidence 4 477765432 5799999987764 2232 11 11122223 234 4666633 1245999999
Q ss_pred CCCcEEEee
Q 006334 264 STCSWSQLD 272 (650)
Q Consensus 264 ~t~~W~~l~ 272 (650)
++.+...+.
T Consensus 251 ~~~~~~~~~ 259 (331)
T 3u4y_A 251 LSGTLSFVK 259 (331)
T ss_dssp TTTEEEEEE
T ss_pred CCCceeeec
Confidence 998875554
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=91.68 E-value=10 Score=36.69 Aligned_cols=225 Identities=10% Similarity=-0.027 Sum_probs=116.8
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCcCcCeEEEEECCCCcE
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW-GHKMIVFGGTNGYKKVNDLHILDLESKEW 115 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~-~~~lyVfGG~~~~~~~ndv~~yD~~t~~W 115 (650)
++.||+.... .+.+.+||+. ..+..+..... ...-+++++. ++.+|+.... .+.+++||+. .++
T Consensus 30 ~g~l~v~~~~-----~~~v~~~~~~-~~~~~~~~~~~---~~~~~~i~~~~~g~l~v~~~~-----~~~v~~~d~~-g~~ 94 (300)
T 2qc5_A 30 DGKVWFTQHK-----ANKISSLDQS-GRIKEFEVPTP---DAKVMCLIVSSLGDIWFTENG-----ANKIGKLSKK-GGF 94 (300)
T ss_dssp TSCEEEEETT-----TTEEEEECTT-SCEEEEECSST---TCCEEEEEECTTSCEEEEETT-----TTEEEEECTT-SCE
T ss_pred CCCEEEEcCC-----CCeEEEECCC-CceEEEECCCC---CCcceeEEECCCCCEEEEecC-----CCeEEEECCC-CCe
Confidence 4788885432 2468999988 77766543211 1222344443 5778886422 2468999988 777
Q ss_pred EeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeee-ecCEEE
Q 006334 116 MRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNV-IANRLF 194 (650)
Q Consensus 116 ~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~-~~~~Iy 194 (650)
..+.... ....-+.++...++.+|+.... .+.+++||++ .+......... ...-+.++. -++++|
T Consensus 95 ~~~~~~~---~~~~~~~i~~~~~g~l~v~~~~-------~~~i~~~~~~-g~~~~~~~~~~---~~~~~~i~~d~~g~l~ 160 (300)
T 2qc5_A 95 TEYPLPQ---PDSGPYGITEGLNGDIWFTQLN-------GDRIGKLTAD-GTIYEYDLPNK---GSYPAFITLGSDNALW 160 (300)
T ss_dssp EEEECSS---TTCCEEEEEECSTTCEEEEETT-------TTEEEEECTT-SCEEEEECSST---TCCEEEEEECTTSSEE
T ss_pred EEecCCC---CCCCCccceECCCCCEEEEccC-------CCeEEEECCC-CCEEEccCCCC---CCCceeEEECCCCCEE
Confidence 6542211 1122334444446788876432 1358889887 55553321111 111122332 246788
Q ss_pred EEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEE-CCEEEEEeccCCCcccCeEEEEECCCCcEEEeec
Q 006334 195 VYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINI-GTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLDT 273 (650)
Q Consensus 195 v~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~-~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~~ 273 (650)
+.... .+.+++||+ +.++..+..... ...-..++.. ++.||+.... ...+++||+ +..+..+..
T Consensus 161 v~~~~-----~~~i~~~~~-~g~~~~~~~~~~---~~~~~~i~~d~~g~l~v~~~~-----~~~i~~~~~-~g~~~~~~~ 225 (300)
T 2qc5_A 161 FTENQ-----NNSIGRITN-TGKLEEYPLPTN---AAAPVGITSGNDGALWFVEIM-----GNKIGRITT-TGEISEYDI 225 (300)
T ss_dssp EEETT-----TTEEEEECT-TCCEEEEECSST---TCCEEEEEECTTSSEEEEETT-----TTEEEEECT-TCCEEEEEC
T ss_pred EEecC-----CCeEEEECC-CCcEEEeeCCCC---CCCcceEEECCCCCEEEEccC-----CCEEEEEcC-CCcEEEEEC
Confidence 76432 247999998 666766542111 1112223332 4578876421 246899998 666666542
Q ss_pred CCCCCCCcceeEEEEE-CCeEEEEcCCCCCCCCCCcEEEEec
Q 006334 274 CGQQPQGRFSHAAVVT-GSDIVIYGGCGEDERPLNELLVLQL 314 (650)
Q Consensus 274 ~~~~p~~R~~hsav~~-~~~lyV~GG~~~~~~~~~d~~~l~l 314 (650)
... ...-.++++. ++.|||.... .+.+.+++.
T Consensus 226 ~~~---~~~~~~i~~d~~g~l~v~~~~------~~~i~~~~~ 258 (300)
T 2qc5_A 226 PTP---NARPHAITAGKNSEIWFTEWG------ANQIGRITN 258 (300)
T ss_dssp SST---TCCEEEEEECSTTCEEEEETT------TTEEEEECT
T ss_pred CCC---CCCceEEEECCCCCEEEeccC------CCeEEEECC
Confidence 111 1111233333 4678777421 134566654
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=91.55 E-value=16 Score=40.87 Aligned_cols=126 Identities=16% Similarity=0.226 Sum_probs=66.8
Q ss_pred EEEEECCEEEEEcccCCCcCcCeEEEEEC-CCC--cEEeeecCCC--CCCCC---cccEEEEE-cCCE----EEEEcccc
Q 006334 82 SAILWGHKMIVFGGTNGYKKVNDLHILDL-ESK--EWMRPECRGA--PPSPR---ESHTATLV-GDDK----MVIFGGSG 148 (650)
Q Consensus 82 sa~~~~~~lyVfGG~~~~~~~ndv~~yD~-~t~--~W~~l~~~~~--~P~~R---~~hs~~~~-~~~~----Lyv~GG~~ 148 (650)
+-++.++.||+...+ .+.++.||. .+. .|+.-..... .+..+ ...+.++. .+++ ||+...
T Consensus 57 tP~v~~g~vyv~~~~-----~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~-- 129 (599)
T 1w6s_A 57 APLVVDGKMYIHTSF-----PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL-- 129 (599)
T ss_dssp CCEEETTEEEEECST-----TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT--
T ss_pred ccEEECCEEEEEeCC-----CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC--
Confidence 335679999997652 246999999 776 4876311000 00001 01122331 3455 766422
Q ss_pred CCCCcccceEEEEecCCC--ceeeccccCCCCCC-CCcceeeeecCEEEEEeccCCCCccCeEEEEECCCCc--EEEee
Q 006334 149 EGEANYLNDLHVLDLKTM--RWASPAVKGDIPVP-RDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLT--WSRLA 222 (650)
Q Consensus 149 ~~~~~~~~dv~~yd~~t~--~Wt~i~~~~~lP~~-R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~--W~~i~ 222 (650)
-..++.+|..+. .|+.-. ...... ....+.++.++.||+-.+.........++.||..+.+ |+.-.
T Consensus 130 ------dg~l~AlDa~TG~~~W~~~~--~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 130 ------DGNVAALNAETGETVWKVEN--SDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp ------TSEEEEEETTTCCEEEEEEC--CCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred ------CCEEEEEECCCCCEEEeecC--CCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcC
Confidence 135889998776 487421 110000 1122334567888764432111234689999998765 87644
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=91.55 E-value=11 Score=37.09 Aligned_cols=193 Identities=10% Similarity=0.063 Sum_probs=96.8
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CC-EEEEEcccCCCcCcCeEEEEECCCCc
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW-GH-KMIVFGGTNGYKKVNDLHILDLESKE 114 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~-~~-~lyVfGG~~~~~~~ndv~~yD~~t~~ 114 (650)
.+.+|+.... .+.+.+||+.+++.......+. ... .+++. ++ .+|+.+..+ +.++++|+.+.+
T Consensus 9 ~~~~~v~~~~-----~~~v~~~d~~~~~~~~~~~~~~----~~~-~~~~s~dg~~l~~~~~~~-----~~i~~~d~~~~~ 73 (331)
T 3u4y_A 9 SNFGIVVEQH-----LRRISFFSTDTLEILNQITLGY----DFV-DTAITSDCSNVVVTSDFC-----QTLVQIETQLEP 73 (331)
T ss_dssp CCEEEEEEGG-----GTEEEEEETTTCCEEEEEECCC----CEE-EEEECSSSCEEEEEESTT-----CEEEEEECSSSS
T ss_pred CCEEEEEecC-----CCeEEEEeCcccceeeeEEccC----Ccc-eEEEcCCCCEEEEEeCCC-----CeEEEEECCCCc
Confidence 4677877663 3579999999988866544321 111 33332 44 477665422 389999998887
Q ss_pred E-EeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee-cC-
Q 006334 115 W-MRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI-AN- 191 (650)
Q Consensus 115 W-~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~-~~- 191 (650)
. ........ ...+++++..+++.++.+... .....+++||+.+.+..... +.....+.++.. ++
T Consensus 74 ~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~~----~~~~~i~v~d~~~~~~~~~~-----~~~~~~~~~~~spdg~ 140 (331)
T 3u4y_A 74 PKVVAIQEGQ----SSMADVDITPDDQFAVTVTGL----NHPFNMQSYSFLKNKFISTI-----PIPYDAVGIAISPNGN 140 (331)
T ss_dssp CEEEEEEECS----SCCCCEEECTTSSEEEECCCS----SSSCEEEEEETTTTEEEEEE-----ECCTTEEEEEECTTSS
T ss_pred eeEEecccCC----CCccceEECCCCCEEEEecCC----CCcccEEEEECCCCCeEEEE-----ECCCCccceEECCCCC
Confidence 5 22211111 112323444444433333221 01137999999887654422 111112333333 33
Q ss_pred EEEEEeccCCCCccCe-EEEEECCCCc-EEEeeecCCCCCcccceEEEEE-CC-EEEEEeccCCCcccCeEEEEECCCCc
Q 006334 192 RLFVYGGDCGDQYHGD-IDMLDMNSLT-WSRLAIIGSSPGVRAGHAAINI-GT-KVYIIGGVGDKHYYNDIWILNVSTCS 267 (650)
Q Consensus 192 ~Iyv~GG~~~~~~~n~-v~~yd~~t~~-W~~i~~~g~~P~~R~~~s~v~~-~~-~IyI~GG~~~~~~~~dv~~yD~~t~~ 267 (650)
.+|+.+... +. +.+|++.... ....... ..+.......++.. ++ .+|+.+.. .+.+++||+.+.+
T Consensus 141 ~l~~~~~~~-----~~~i~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~spdg~~l~v~~~~-----~~~v~v~d~~~~~ 209 (331)
T 3u4y_A 141 GLILIDRSS-----ANTVRRFKIDADGVLFDTGQE-FISGGTRPFNITFTPDGNFAFVANLI-----GNSIGILETQNPE 209 (331)
T ss_dssp CEEEEEETT-----TTEEEEEEECTTCCEEEEEEE-EECSSSSEEEEEECTTSSEEEEEETT-----TTEEEEEECSSTT
T ss_pred EEEEEecCC-----CceEEEEEECCCCcEeecCCc-cccCCCCccceEECCCCCEEEEEeCC-----CCeEEEEECCCCc
Confidence 577765532 34 6677655322 1111000 01111112233332 34 47776532 3479999998876
Q ss_pred E
Q 006334 268 W 268 (650)
Q Consensus 268 W 268 (650)
.
T Consensus 210 ~ 210 (331)
T 3u4y_A 210 N 210 (331)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=91.24 E-value=11 Score=36.48 Aligned_cols=189 Identities=9% Similarity=0.058 Sum_probs=97.6
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCcCcCeEEEEECCCCcE
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW-GHKMIVFGGTNGYKKVNDLHILDLESKEW 115 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~-~~~lyVfGG~~~~~~~ndv~~yD~~t~~W 115 (650)
++.||+.+.. ..+.+++||........+... ....-+.+++. ++++||.... .+.+++||+.....
T Consensus 88 ~g~l~v~~~~----~~~~i~~~d~~g~~~~~~~~~----~~~~~~~i~~~~~g~l~v~~~~-----~~~i~~~~~~g~~~ 154 (286)
T 1q7f_A 88 SGDIIVTERS----PTHQIQIYNQYGQFVRKFGAT----ILQHPRGVTVDNKGRIIVVECK-----VMRVIIFDQNGNVL 154 (286)
T ss_dssp TTEEEEEECG----GGCEEEEECTTSCEEEEECTT----TCSCEEEEEECTTSCEEEEETT-----TTEEEEECTTSCEE
T ss_pred CCeEEEEcCC----CCCEEEEECCCCcEEEEecCc----cCCCceEEEEeCCCCEEEEECC-----CCEEEEEcCCCCEE
Confidence 5788887632 124688999654433333221 11122344443 5788886532 25789999766544
Q ss_pred EeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee-cCEEE
Q 006334 116 MRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI-ANRLF 194 (650)
Q Consensus 116 ~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~-~~~Iy 194 (650)
..+...... ..-..+++..++.||+.... .+.+++||........+...+.+..+ ..++.. ++.+|
T Consensus 155 ~~~~~~~~~---~~p~~i~~~~~g~l~v~~~~-------~~~i~~~~~~g~~~~~~~~~g~~~~p---~~i~~d~~G~l~ 221 (286)
T 1q7f_A 155 HKFGCSKHL---EFPNGVVVNDKQEIFISDNR-------AHCVKVFNYEGQYLRQIGGEGITNYP---IGVGINSNGEIL 221 (286)
T ss_dssp EEEECTTTC---SSEEEEEECSSSEEEEEEGG-------GTEEEEEETTCCEEEEESCTTTSCSE---EEEEECTTCCEE
T ss_pred EEeCCCCcc---CCcEEEEECCCCCEEEEECC-------CCEEEEEcCCCCEEEEEccCCccCCC---cEEEECCCCCEE
Confidence 443211111 12234444456888886543 24689999865544433311111111 222222 46788
Q ss_pred EEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEE-ECCEEEEEeccCCCcccCeEEEEECC
Q 006334 195 VYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAIN-IGTKVYIIGGVGDKHYYNDIWILNVS 264 (650)
Q Consensus 195 v~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~-~~~~IyI~GG~~~~~~~~dv~~yD~~ 264 (650)
+....++ ..+.+||.+...-..+..... ... ..+++. -++++|+.. . .+.+.+|++.
T Consensus 222 v~~~~~~----~~i~~~~~~g~~~~~~~~~~~--~~~-~~~i~~~~~g~l~vs~-~-----~~~v~v~~~~ 279 (286)
T 1q7f_A 222 IADNHNN----FNLTIFTQDGQLISALESKVK--HAQ-CFDVALMDDGSVVLAS-K-----DYRLYIYRYV 279 (286)
T ss_dssp EEECSSS----CEEEEECTTSCEEEEEEESSC--CSC-EEEEEEETTTEEEEEE-T-----TTEEEEEECS
T ss_pred EEeCCCC----EEEEEECCCCCEEEEEcccCC--CCc-ceeEEECCCCcEEEEC-C-----CCeEEEEEcc
Confidence 8764321 278999977655455543211 111 123333 357888873 2 1467777654
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=91.23 E-value=4.5 Score=40.20 Aligned_cols=114 Identities=21% Similarity=0.270 Sum_probs=54.5
Q ss_pred CEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCC--CCcceEEEEE-CCEEEEEcccC----CCc---CcCeEEE
Q 006334 38 GAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPG--PRDSHSAILW-GHKMIVFGGTN----GYK---KVNDLHI 107 (650)
Q Consensus 38 ~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~--pR~~hsa~~~-~~~lyVfGG~~----~~~---~~ndv~~ 107 (650)
+.+|+.+.. ...+++||+.+++.......+..+. ...-+.+++. +++.+++++.. ... ..+.+++
T Consensus 55 ~~~~v~~~~-----~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~ 129 (349)
T 1jmx_B 55 RTAYVLNNH-----YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEV 129 (349)
T ss_dssp SEEEEEETT-----TTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEE
T ss_pred CEEEEEeCC-----CCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEE
Confidence 367776542 2579999999876554322211110 1112233333 45433334321 000 1268999
Q ss_pred EECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCce
Q 006334 108 LDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRW 168 (650)
Q Consensus 108 yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~W 168 (650)
||+.+.+-.+... ....++.-.++....++++|+.++ ++++||+.+.+.
T Consensus 130 ~d~~~~~~~~~~~--~~~~~~~~~~~~~s~dg~l~~~~~----------~i~~~d~~~~~~ 178 (349)
T 1jmx_B 130 FSTADGLEAKPVR--TFPMPRQVYLMRAADDGSLYVAGP----------DIYKMDVKTGKY 178 (349)
T ss_dssp EEGGGGGGBCCSE--EEECCSSCCCEEECTTSCEEEESS----------SEEEECTTTCCE
T ss_pred EECCCccccceee--eccCCCcccceeECCCCcEEEccC----------cEEEEeCCCCce
Confidence 9988743211100 001122233444445667766322 277888776553
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=91.20 E-value=14 Score=37.26 Aligned_cols=235 Identities=12% Similarity=0.053 Sum_probs=119.8
Q ss_pred ceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCcCcCeEEEEECCCCc--EEeeecC---CCCCC
Q 006334 53 GDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW-GHKMIVFGGTNGYKKVNDLHILDLESKE--WMRPECR---GAPPS 126 (650)
Q Consensus 53 ~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~-~~~lyVfGG~~~~~~~ndv~~yD~~t~~--W~~l~~~---~~~P~ 126 (650)
+.++++|+.+.+.......+. -..-+.+++. +++|||.... .+.+++||+.... -..+... +....
T Consensus 69 ~~i~~~d~~~g~~~~~~~~~~---~~~p~gia~d~~g~l~v~d~~-----~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~ 140 (329)
T 3fvz_A 69 DTILVIDPNNAEILQSSGKNL---FYLPHGLSIDTDGNYWVTDVA-----LHQVFKLDPHSKEGPLLILGRSMQPGSDQN 140 (329)
T ss_dssp CCEEEECTTTCCEEEEECTTT---CSSEEEEEECTTSCEEEEETT-----TTEEEEECTTCSSCCSEEESBTTBCCCSTT
T ss_pred CcEEEEECCCCeEEeccCCCc---cCCceEEEECCCCCEEEEECC-----CCEEEEEeCCCCeEEEEEecccCCCCCCcc
Confidence 469999998877654322211 1122344443 6778887543 3578999987652 2222110 00011
Q ss_pred CCccc-EEEEEc-CCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCC----CCCCC-cceeeee-c-CEEEEEe
Q 006334 127 PRESH-TATLVG-DDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDI----PVPRD-SHSSNVI-A-NRLFVYG 197 (650)
Q Consensus 127 ~R~~h-s~~~~~-~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~l----P~~R~-~hs~v~~-~-~~Iyv~G 197 (650)
..... .+++.. ++.||+..++. .+.+.+||.+......+...+.- +.... -+.++.. + +.||+..
T Consensus 141 ~~~~P~~ia~~~~~g~lyv~d~~~------~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d 214 (329)
T 3fvz_A 141 HFCQPTDVAVEPSTGAVFVSDGYC------NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVAD 214 (329)
T ss_dssp CCSSEEEEEECTTTCCEEEEECSS------CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEE
T ss_pred ccCCCcEEEEeCCCCeEEEEeCCC------CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEE
Confidence 11223 333333 68899987531 24688898654333322211111 11111 1233332 3 7899886
Q ss_pred ccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCC--CcccCeEEEEECCCCcEEEeecCC
Q 006334 198 GDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGD--KHYYNDIWILNVSTCSWSQLDTCG 275 (650)
Q Consensus 198 G~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~--~~~~~dv~~yD~~t~~W~~l~~~~ 275 (650)
..+ +.+.+||+.+.+....-. .......-.+++...+.+|...|... ......+++||+.+.+....-...
T Consensus 215 ~~~-----~~I~~~~~~~G~~~~~~~--~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~ 287 (329)
T 3fvz_A 215 REN-----GRIQCFKTDTKEFVREIK--HASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPV 287 (329)
T ss_dssp TTT-----TEEEEEETTTCCEEEEEC--CTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCS
T ss_pred CCC-----CEEEEEECCCCcEEEEEe--ccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCC
Confidence 533 579999998666554321 11111222234444477777766421 233457999999888765542100
Q ss_pred CCCCCcceeEEEEE-CCeEEEEcCCCCCCCCCCcEEEEecC
Q 006334 276 QQPQGRFSHAAVVT-GSDIVIYGGCGEDERPLNELLVLQLG 315 (650)
Q Consensus 276 ~~p~~R~~hsav~~-~~~lyV~GG~~~~~~~~~d~~~l~l~ 315 (650)
......-+++++. ++.|||.... .+.++++++.
T Consensus 288 -~~~~~~p~~ia~~~dG~lyvad~~------~~~I~~~~~~ 321 (329)
T 3fvz_A 288 -RKHFDMPHDIVASEDGTVYIGDAH------TNTVWKFTLT 321 (329)
T ss_dssp -SSCCSSEEEEEECTTSEEEEEESS------SCCEEEEEEE
T ss_pred -CCccCCeeEEEECCCCCEEEEECC------CCEEEEEeCC
Confidence 0111222344443 4678888543 2467777764
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=91.13 E-value=14 Score=37.43 Aligned_cols=240 Identities=9% Similarity=0.060 Sum_probs=121.6
Q ss_pred CCCeEEeeecCCCCCCCcceeEEEEE-CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCE
Q 006334 11 RAAMWLYPKVLGFNPPERWGHSACYS-HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHK 89 (650)
Q Consensus 11 ~~~~W~~~~~~g~~P~~R~ghs~v~~-~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~ 89 (650)
....|...... ....-.++.+. .+.+|+.|-. ..+++.+-...+|+.+......+ .....++.+.++.
T Consensus 23 ~g~~W~~~~~~----~~~~~~~v~~~~~~~~~~~G~~------g~i~~s~DgG~tW~~~~~~~~~~-~~~~~~i~~~~~~ 91 (327)
T 2xbg_A 23 DYNPWEAIQLP----TTATILDMSFIDRHHGWLVGVN------ATLMETRDGGQTWEPRTLVLDHS-DYRFNSVSFQGNE 91 (327)
T ss_dssp SSCCEEEEECS----CSSCEEEEEESSSSCEEEEETT------TEEEEESSTTSSCEECCCCCSCC-CCEEEEEEEETTE
T ss_pred CCCCceEeecC----CCCcEEEEEECCCCcEEEEcCC------CeEEEeCCCCCCCeECCCCCCCC-CccEEEEEecCCe
Confidence 34679876532 22223333343 4677886531 23665555556899985432111 2233445556788
Q ss_pred EEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCcee
Q 006334 90 MIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWA 169 (650)
Q Consensus 90 lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt 169 (650)
+|+.|-. ..+++-+=.-.+|+.+......|. ....++...++.+|+.|... .+++-+-.-.+|+
T Consensus 92 ~~~~g~~------g~i~~S~DgG~tW~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~g--------~v~~S~DgG~tW~ 155 (327)
T 2xbg_A 92 GWIVGEP------PIMLHTTDGGQSWSQIPLDPKLPG--SPRLIKALGNGSAEMITNVG--------AIYRTKDSGKNWQ 155 (327)
T ss_dssp EEEEEET------TEEEEESSTTSSCEECCCCTTCSS--CEEEEEEEETTEEEEEETTC--------CEEEESSTTSSEE
T ss_pred EEEEECC------CeEEEECCCCCCceECccccCCCC--CeEEEEEECCCCEEEEeCCc--------cEEEEcCCCCCCE
Confidence 8887532 234443223468999743211221 12344444568888876421 2444332356899
Q ss_pred eccccCCCCCCCCcceeeee-cCEEEEEeccCCCCccCeEEEEECC-CCcEEEeeecCCCCCcccceEEEE-ECCEEEEE
Q 006334 170 SPAVKGDIPVPRDSHSSNVI-ANRLFVYGGDCGDQYHGDIDMLDMN-SLTWSRLAIIGSSPGVRAGHAAIN-IGTKVYII 246 (650)
Q Consensus 170 ~i~~~~~lP~~R~~hs~v~~-~~~Iyv~GG~~~~~~~n~v~~yd~~-t~~W~~i~~~g~~P~~R~~~s~v~-~~~~IyI~ 246 (650)
.+.. +.....+.++.. ++.+|++|- . ..+++-+-. ..+|+.+.. +.....+.++. .++++|+.
T Consensus 156 ~~~~----~~~~~~~~~~~~~~~~~~~~g~-~-----G~~~~S~d~gG~tW~~~~~----~~~~~~~~~~~~~~g~~~~~ 221 (327)
T 2xbg_A 156 ALVQ----EAIGVMRNLNRSPSGEYVAVSS-R-----GSFYSTWEPGQTAWEPHNR----TTSRRLHNMGFTPDGRLWMI 221 (327)
T ss_dssp EEEC----SCCCCEEEEEECTTSCEEEEET-T-----SSEEEEECTTCSSCEEEEC----CSSSCEEEEEECTTSCEEEE
T ss_pred Eeec----CCCcceEEEEEcCCCcEEEEEC-C-----CcEEEEeCCCCCceeECCC----CCCCccceeEECCCCCEEEE
Confidence 8652 112223333333 456666653 2 245555433 578999862 22333444444 34678877
Q ss_pred eccCCCcccCeEEEEECC-CCcEEEeecCCCCCCCcceeEEEEE-CCeEEEEcC
Q 006334 247 GGVGDKHYYNDIWILNVS-TCSWSQLDTCGQQPQGRFSHAAVVT-GSDIVIYGG 298 (650)
Q Consensus 247 GG~~~~~~~~dv~~yD~~-t~~W~~l~~~~~~p~~R~~hsav~~-~~~lyV~GG 298 (650)
+.. ..+++.+.. -.+|+.+... .++.....+.++.. ++.+|+.|+
T Consensus 222 ~~~------G~~~~s~~D~G~tW~~~~~~-~~~~~~~~~~v~~~~~~~~~~~g~ 268 (327)
T 2xbg_A 222 VNG------GKIAFSDPDNSENWGELLSP-LRRNSVGFLDLAYRTPNEVWLAGG 268 (327)
T ss_dssp ETT------TEEEEEETTEEEEECCCBCT-TSSCCSCEEEEEESSSSCEEEEES
T ss_pred eCC------ceEEEecCCCCCeeEeccCC-cccCCcceEEEEecCCCEEEEEeC
Confidence 531 135554333 5689877531 12222222333333 567888876
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=91.06 E-value=0.91 Score=46.40 Aligned_cols=152 Identities=8% Similarity=0.087 Sum_probs=71.4
Q ss_pred CCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCC
Q 006334 87 GHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTM 166 (650)
Q Consensus 87 ~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~ 166 (650)
++++++.|+.++ .+.+||+.+..|..+..-.. ....-.++....++.+++.|+.+ ..+.+||+.+.
T Consensus 22 ~g~~l~~~~~d~-----~i~iw~~~~~~~~~~~~~~~--h~~~v~~~~~s~~~~~l~s~s~d-------~~v~vwd~~~~ 87 (377)
T 3dwl_C 22 QRTEFVTTTATN-----QVELYEQDGNGWKHARTFSD--HDKIVTCVDWAPKSNRIVTCSQD-------RNAYVYEKRPD 87 (377)
T ss_dssp SSSEEECCCSSS-----CBCEEEEETTEEEECCCBCC--CSSCEEEEEECTTTCCEEEEETT-------SSEEEC-----
T ss_pred CCCEEEEecCCC-----EEEEEEccCCceEEEEEEec--CCceEEEEEEeCCCCEEEEEeCC-------CeEEEEEcCCC
Confidence 566777776543 46677888887766522111 11112333334466777887763 24888888877
Q ss_pred c-eeeccccCCCCCCCCcceeeee--cCEEEEEeccCCCCccCeEEEEECCCCc-EEEeeecCCCCCcccceEEEEE-CC
Q 006334 167 R-WASPAVKGDIPVPRDSHSSNVI--ANRLFVYGGDCGDQYHGDIDMLDMNSLT-WSRLAIIGSSPGVRAGHAAINI-GT 241 (650)
Q Consensus 167 ~-Wt~i~~~~~lP~~R~~hs~v~~--~~~Iyv~GG~~~~~~~n~v~~yd~~t~~-W~~i~~~g~~P~~R~~~s~v~~-~~ 241 (650)
. |..... +.........+.+ ++.+++.|+.+ ..+..||+.+.+ |..+..... +....-.+++.. ++
T Consensus 88 ~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~ 158 (377)
T 3dwl_C 88 GTWKQTLV---LLRLNRAATFVRWSPNEDKFAVGSGA-----RVISVCYFEQENDWWVSKHLKR-PLRSTILSLDWHPNN 158 (377)
T ss_dssp -CCCCEEE---CCCCSSCEEEEECCTTSSCCEEEESS-----SCEEECCC-----CCCCEEECS-SCCSCEEEEEECTTS
T ss_pred CceeeeeE---ecccCCceEEEEECCCCCEEEEEecC-----CeEEEEEECCcccceeeeEeec-ccCCCeEEEEEcCCC
Confidence 6 543321 1111111122222 45667777754 357788877654 332221111 111112222222 45
Q ss_pred EEEEEeccCCCcccCeEEEEECCCC
Q 006334 242 KVYIIGGVGDKHYYNDIWILNVSTC 266 (650)
Q Consensus 242 ~IyI~GG~~~~~~~~dv~~yD~~t~ 266 (650)
++++.|+.+ ..+.+||+.+.
T Consensus 159 ~~l~~~~~d-----~~i~iwd~~~~ 178 (377)
T 3dwl_C 159 VLLAAGCAD-----RKAYVLSAYVR 178 (377)
T ss_dssp SEEEEEESS-----SCEEEEEECCS
T ss_pred CEEEEEeCC-----CEEEEEEEEec
Confidence 677777654 35788887643
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=91.04 E-value=10 Score=37.38 Aligned_cols=109 Identities=9% Similarity=0.097 Sum_probs=53.6
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE---CCEEEEEcccCCCcCcCeEEEEECCCC
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW---GHKMIVFGGTNGYKKVNDLHILDLESK 113 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~---~~~lyVfGG~~~~~~~ndv~~yD~~t~ 113 (650)
++..++.|+.++ .+.+||..+.....+..... ....-.++.+. ++.+++.|+.++ .+.++|+.+.
T Consensus 20 ~g~~las~s~D~-----~v~iw~~~~~~~~~~~~l~g--H~~~V~~v~~s~~~~g~~l~s~s~D~-----~v~iWd~~~~ 87 (297)
T 2pm7_B 20 YGKRMATCSSDK-----TIKIFEVEGETHKLIDTLTG--HEGPVWRVDWAHPKFGTILASCSYDG-----KVMIWKEENG 87 (297)
T ss_dssp TSSEEEEEETTS-----CEEEEEBCSSCBCCCEEECC--CSSCEEEEEECCGGGCSEEEEEETTT-----EEEEEEBSSS
T ss_pred CCCEEEEEeCCC-----EEEEEecCCCCcEEEEEEcc--ccCCeEEEEecCCCcCCEEEEEcCCC-----EEEEEEcCCC
Confidence 456677777543 57778876543322211100 01111223332 256777777643 5778888887
Q ss_pred cEEeeecCCCCCCCCcccEEEEEcC--CEEEEEccccCCCCcccceEEEEecCCC
Q 006334 114 EWMRPECRGAPPSPRESHTATLVGD--DKMVIFGGSGEGEANYLNDLHVLDLKTM 166 (650)
Q Consensus 114 ~W~~l~~~~~~P~~R~~hs~~~~~~--~~Lyv~GG~~~~~~~~~~dv~~yd~~t~ 166 (650)
.|..+...... ...-.++....+ +.+++.|+.+ ..+.+||+.+.
T Consensus 88 ~~~~~~~~~~h--~~~v~~v~~~p~~~g~~l~s~s~d-------~~v~~wd~~~~ 133 (297)
T 2pm7_B 88 RWSQIAVHAVH--SASVNSVQWAPHEYGPMLLVASSD-------GKVSVVEFKEN 133 (297)
T ss_dssp CBCCCEEECCC--SSCEEEEEECCGGGCSEEEEEETT-------SEEEEEEBCSS
T ss_pred ceEEEEEeecC--CCceeEEEeCcCCCCcEEEEEECC-------CcEEEEEecCC
Confidence 77543211111 111112222222 4567777763 35777887654
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=90.86 E-value=25 Score=39.73 Aligned_cols=124 Identities=17% Similarity=0.247 Sum_probs=68.8
Q ss_pred eEEEEECCEEEEEccCCCCcccceEEEEECCCCc--EEEeecCCCC-----CCCCcceEEEEECCEEEEEcccCCCcCcC
Q 006334 31 HSACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMV--WSTLATTGQG-----PGPRDSHSAILWGHKMIVFGGTNGYKKVN 103 (650)
Q Consensus 31 hs~v~~~~~IyvfGG~~~~~~~~dv~~yD~~t~s--W~~l~~~g~~-----P~pR~~hsa~~~~~~lyVfGG~~~~~~~n 103 (650)
.+.++.++.||+... .+.++.+|..+++ |+.-...... .......+.++.+++||+... ..
T Consensus 60 ~~P~v~~g~vyv~~~------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~------dg 127 (668)
T 1kv9_A 60 ATPLFHDGVIYTSMS------WSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL------DG 127 (668)
T ss_dssp CCCEEETTEEEEEEG------GGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT------TS
T ss_pred cCCEEECCEEEEECC------CCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC------CC
Confidence 344678999999765 2469999987664 8764322100 000112334567888887532 24
Q ss_pred eEEEEECCCCc--EEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCC--ceee
Q 006334 104 DLHILDLESKE--WMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTM--RWAS 170 (650)
Q Consensus 104 dv~~yD~~t~~--W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~--~Wt~ 170 (650)
.++.+|..+.+ |+.-... ....-....+.++. ++.+|+-.+.. .......++.||..+. .|+.
T Consensus 128 ~l~alD~~tG~~~W~~~~~~-~~~~~~~~~~P~v~-~~~v~vg~~~~--~~~~~g~v~a~D~~tG~~~W~~ 194 (668)
T 1kv9_A 128 RLIALDAKTGKAIWSQQTTD-PAKPYSITGAPRVV-KGKVIIGNGGA--EYGVRGFVSAYDADTGKLAWRF 194 (668)
T ss_dssp EEEEEETTTCCEEEEEECSC-TTSSCBCCSCCEEE-TTEEEECCBCT--TTCCBCEEEEEETTTCCEEEEE
T ss_pred EEEEEECCCCCEeeeeccCC-CCCcceecCCCEEE-CCEEEEeCCCC--CcCCCCEEEEEECCCCcEEEEe
Confidence 69999998874 8763111 11111111222333 67777633221 1123457999999876 4875
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.74 E-value=14 Score=37.55 Aligned_cols=236 Identities=12% Similarity=0.105 Sum_probs=110.7
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCC--cEEEeecCCCCCCCCcceEEEEE-C-CEEEEEcccCCCcCcCeEEEEECCC
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTM--VWSTLATTGQGPGPRDSHSAILW-G-HKMIVFGGTNGYKKVNDLHILDLES 112 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~--sW~~l~~~g~~P~pR~~hsa~~~-~-~~lyVfGG~~~~~~~ndv~~yD~~t 112 (650)
++.+++.|+.+ ..+.+||..+. ....+..... ....-.++.+. + +.+++.|+.++ .+.+||+.+
T Consensus 78 ~~~~l~~~~~d-----g~v~vw~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~l~s~~~dg-----~v~iwd~~~ 145 (416)
T 2pm9_A 78 NNKIIAGALDN-----GSLELYSTNEANNAINSMARFSN--HSSSVKTVKFNAKQDNVLASGGNNG-----EIFIWDMNK 145 (416)
T ss_dssp SSSCEEEEESS-----SCEEEECCSSTTSCCCEEEECCC--SSSCCCEEEECSSSTTBEEEECSSS-----CEEBCBTTT
T ss_pred CCCeEEEEccC-----CeEEEeecccccccccchhhccC--CccceEEEEEcCCCCCEEEEEcCCC-----eEEEEECCC
Confidence 45666666643 35788888761 1112211100 01112233333 3 66777777543 577888876
Q ss_pred Cc------EEeeecCCCCCCCCcccEEEEEcC-CEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCC-----C
Q 006334 113 KE------WMRPECRGAPPSPRESHTATLVGD-DKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPV-----P 180 (650)
Q Consensus 113 ~~------W~~l~~~~~~P~~R~~hs~~~~~~-~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~-----~ 180 (650)
.. -... ..........-.++....+ +.+++.|+.+ ..+.+||+.+.+....- ..+. .
T Consensus 146 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-------g~v~iwd~~~~~~~~~~---~~~~~~~~~~ 214 (416)
T 2pm9_A 146 CTESPSNYTPLT-PGQSMSSVDEVISLAWNQSLAHVFASAGSS-------NFASIWDLKAKKEVIHL---SYTSPNSGIK 214 (416)
T ss_dssp TSSCTTTCCCBC-CCCSCCSSCCCCEEEECSSCTTEEEEESSS-------SCEEEEETTTTEEEEEE---CCCCCSSCCC
T ss_pred Cccccccccccc-cccccCCCCCeeEEEeCCCCCcEEEEEcCC-------CCEEEEECCCCCcceEE---eccccccccC
Confidence 64 1110 0000111122233444444 5677777763 35889998876544321 1111 1
Q ss_pred CCcceeeee-c-CEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCC-CcccceEEEEE---CCEEEEEeccCCCcc
Q 006334 181 RDSHSSNVI-A-NRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSP-GVRAGHAAINI---GTKVYIIGGVGDKHY 254 (650)
Q Consensus 181 R~~hs~v~~-~-~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P-~~R~~~s~v~~---~~~IyI~GG~~~~~~ 254 (650)
..-.++... + ..+++.|+.++. ...+.+||+.+..-. +. ... ........+.+ ++.+++.|+.+
T Consensus 215 ~~v~~~~~~~~~~~~l~~~~~d~~--~~~i~~~d~~~~~~~-~~---~~~~~~~~~v~~~~~s~~~~~~l~s~~~d---- 284 (416)
T 2pm9_A 215 QQLSVVEWHPKNSTRVATATGSDN--DPSILIWDLRNANTP-LQ---TLNQGHQKGILSLDWCHQDEHLLLSSGRD---- 284 (416)
T ss_dssp CCEEEEEECSSCTTEEEEEECCSS--SCCCCEEETTSTTSC-SB---CCCSCCSSCEEEEEECSSCSSCEEEEESS----
T ss_pred CceEEEEECCCCCCEEEEEECCCC--CceEEEEeCCCCCCC-cE---EeecCccCceeEEEeCCCCCCeEEEEeCC----
Confidence 111222222 2 357777765421 126788888764311 11 111 11112222222 56777777653
Q ss_pred cCeEEEEECCCCcEEEeecCCCCCCCcceeEEEEE-CC-eEEEEcCCCCCCCCCCcEEEEecCC
Q 006334 255 YNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVT-GS-DIVIYGGCGEDERPLNELLVLQLGA 316 (650)
Q Consensus 255 ~~dv~~yD~~t~~W~~l~~~~~~p~~R~~hsav~~-~~-~lyV~GG~~~~~~~~~d~~~l~l~~ 316 (650)
..+.+||+.+.+-...-.. ..... .++.+. ++ .+++.|+.+ ..+.++++..
T Consensus 285 -g~v~~wd~~~~~~~~~~~~---~~~~v-~~~~~s~~~~~~l~s~~~d------~~i~iw~~~~ 337 (416)
T 2pm9_A 285 -NTVLLWNPESAEQLSQFPA---RGNWC-FKTKFAPEAPDLFACASFD------NKIEVQTLQN 337 (416)
T ss_dssp -SEEEEECSSSCCEEEEEEC---SSSCC-CCEEECTTCTTEEEECCSS------SEEEEEESCC
T ss_pred -CCEEEeeCCCCccceeecC---CCCce-EEEEECCCCCCEEEEEecC------CcEEEEEccC
Confidence 3588999887654332110 11111 123333 34 678887753 3466666653
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=90.71 E-value=2.6 Score=43.06 Aligned_cols=202 Identities=10% Similarity=0.026 Sum_probs=97.5
Q ss_pred ceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCC-CcCcCeEEEEECCCCcEEeeecCCCCCCCCcc
Q 006334 53 GDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW-GHKMIVFGGTNG-YKKVNDLHILDLESKEWMRPECRGAPPSPRES 130 (650)
Q Consensus 53 ~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~-~~~lyVfGG~~~-~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~ 130 (650)
..++++|+.+..-..+.... ....+....- +++.++|..... ......+|.+|..+.....+. ........
T Consensus 168 ~~l~~~d~~~g~~~~l~~~~----~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~---~~~~~~~~ 240 (388)
T 3pe7_A 168 CRLMRVDLKTGESTVILQEN----QWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVK---THAEGESC 240 (388)
T ss_dssp EEEEEEETTTCCEEEEEEES----SCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESC---CCCTTEEE
T ss_pred ceEEEEECCCCceEEeecCC----ccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEee---eCCCCccc
Confidence 57999999988766664331 2333444444 566555544322 223568999999887766652 11111111
Q ss_pred cEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCC------CCcceeeeecCEEEEEecc---CC
Q 006334 131 HTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVP------RDSHSSNVIANRLFVYGGD---CG 201 (650)
Q Consensus 131 hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~------R~~hs~v~~~~~Iyv~GG~---~~ 201 (650)
.......+++.+++..... ......++++|+.+.+...+.. .+.. .......-.+..|++..-. ..
T Consensus 241 ~~~~~spdg~~l~~~~~~~--~~~~~~l~~~d~~~g~~~~l~~---~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 315 (388)
T 3pe7_A 241 THEFWVPDGSALVYVSYLK--GSPDRFIYSADPETLENRQLTS---MPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYK 315 (388)
T ss_dssp EEEEECTTSSCEEEEEEET--TCCCEEEEEECTTTCCEEEEEE---ECCEEEEEECTTSSEEEEEECCC-----------
T ss_pred ccceECCCCCEEEEEecCC--CCCcceEEEEecCCCceEEEEc---CCCceeeeecCCCCeEccCCCcceeEeeeccccc
Confidence 2223334555443333221 1112359999999887655431 1110 0011111222333322100 00
Q ss_pred CCccCeEEEEECCCCcEEEeeecCCCCC-------cccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCcE
Q 006334 202 DQYHGDIDMLDMNSLTWSRLAIIGSSPG-------VRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCSW 268 (650)
Q Consensus 202 ~~~~n~v~~yd~~t~~W~~i~~~g~~P~-------~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W 268 (650)
......++++|+.+.+...+........ ......+...+++.+++..... ....+|.+|+....|
T Consensus 316 ~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~--g~~~l~~~~l~~~~~ 387 (388)
T 3pe7_A 316 IENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVH--GKPALYLATLPESVW 387 (388)
T ss_dssp -CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTT--SSCEEEEEECCGGGG
T ss_pred cCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCC--CceeEEEEECChhcc
Confidence 1223579999999988877764221000 0112222334454444433222 235799999887765
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=90.64 E-value=2.2 Score=43.93 Aligned_cols=199 Identities=12% Similarity=0.113 Sum_probs=86.9
Q ss_pred CCEEEEEccCCCCcc-cceEEEEECCCCcEEEeecCCCCCCCCc-ceEEEEE-CCEEEEEcccCCCcCcCeEEEEECCCC
Q 006334 37 HGAVYIFGGCCGGLH-FGDVLMLNLDTMVWSTLATTGQGPGPRD-SHSAILW-GHKMIVFGGTNGYKKVNDLHILDLESK 113 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~-~~dv~~yD~~t~sW~~l~~~g~~P~pR~-~hsa~~~-~~~lyVfGG~~~~~~~ndv~~yD~~t~ 113 (650)
++.+++-|+.+.... -..++.|+..+..-...... ....... -.++++. ++++++ |+.++ .+.++|+.+.
T Consensus 53 DG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~-~~~~~~~~V~~~~~s~d~~~l~-~s~dg-----~v~lWd~~~~ 125 (357)
T 4g56_B 53 DGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCT-AGVQTEAGVTDVAWVSEKGILV-ASDSG-----AVELWEILEK 125 (357)
T ss_dssp SSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCS-EEEECSSCEEEEEEETTTEEEE-EETTS-----CEEEC-----
T ss_pred CCCEEEEEcCCCCccccCeEEEEECCCCCcceeEec-ccCCCCCCEEEEEEcCCCCEEE-EECCC-----EEEEeecccc
Confidence 577777777543222 23577777654321100000 0000011 1223333 566554 54432 4777787765
Q ss_pred cEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee---c
Q 006334 114 EWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI---A 190 (650)
Q Consensus 114 ~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~---~ 190 (650)
+-..+...........-.++....++++++.|+.+ ..+.+||..+.+-...- ......-..+.+ +
T Consensus 126 ~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~d-------g~v~iwd~~~~~~~~~~-----~~h~~~v~~v~~s~~~ 193 (357)
T 4g56_B 126 ESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKD-------FSVKVWDLSQKAVLKSY-----NAHSSEVNCVAACPGK 193 (357)
T ss_dssp ---CCCCEEECCCSSCEEEEEECSSSSEEEEEETT-------SCEEEEETTTTEEEEEE-----CCCSSCEEEEEECTTC
T ss_pred ceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCC-------CeEEEEECCCCcEEEEE-----cCCCCCEEEEEEccCC
Confidence 43221000000011112233444567778888763 24788898876543211 111111112222 2
Q ss_pred CEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEE---CCEEEEEeccCCCcccCeEEEEECCCCc
Q 006334 191 NRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINI---GTKVYIIGGVGDKHYYNDIWILNVSTCS 267 (650)
Q Consensus 191 ~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~---~~~IyI~GG~~~~~~~~dv~~yD~~t~~ 267 (650)
+.+++.++.+ ..+.+||+.+.+-.... ..........++.+ ++.+++.|+.+ ..+.+||+.+.+
T Consensus 194 ~~~~~s~~~d-----g~v~~wd~~~~~~~~~~---~~~~~~~~v~~v~~sp~~~~~la~g~~d-----~~i~~wd~~~~~ 260 (357)
T 4g56_B 194 DTIFLSCGED-----GRILLWDTRKPKPATRI---DFCASDTIPTSVTWHPEKDDTFACGDET-----GNVSLVNIKNPD 260 (357)
T ss_dssp SSCEEEEETT-----SCEEECCTTSSSCBCBC---CCTTCCSCEEEEEECTTSTTEEEEEESS-----SCEEEEESSCGG
T ss_pred CceeeeeccC-----CceEEEECCCCceeeee---eeccccccccchhhhhcccceEEEeecc-----cceeEEECCCCc
Confidence 3567777755 36788888765432211 11111122223333 34677777653 358889987654
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=90.37 E-value=14 Score=36.20 Aligned_cols=191 Identities=9% Similarity=0.055 Sum_probs=90.9
Q ss_pred CEEEEEccCCCCcccceEEEEECCCCc---EEEeecCCCCCCCCcceEEEE-ECCEEEEEcccCCCcCcCeEEEEECCCC
Q 006334 38 GAVYIFGGCCGGLHFGDVLMLNLDTMV---WSTLATTGQGPGPRDSHSAIL-WGHKMIVFGGTNGYKKVNDLHILDLESK 113 (650)
Q Consensus 38 ~~IyvfGG~~~~~~~~dv~~yD~~t~s---W~~l~~~g~~P~pR~~hsa~~-~~~~lyVfGG~~~~~~~ndv~~yD~~t~ 113 (650)
+.+++-||.++ .+.++|+.+.. ......... ....-.++.+ .++++++.|+.++ .+..++....
T Consensus 51 ~~~l~S~s~D~-----~i~vWd~~~~~~~~~~~~~~l~~--h~~~V~~~~~s~dg~~l~s~~~d~-----~i~~~~~~~~ 118 (340)
T 4aow_A 51 PDMILSASRDK-----TIIMWKLTRDETNYGIPQRALRG--HSHFVSDVVISSDGQFALSGSWDG-----TLRLWDLTTG 118 (340)
T ss_dssp TTEEEEEETTS-----CEEEEEECCSSSCSEEEEEEECC--CSSCEEEEEECTTSSEEEEEETTS-----EEEEEETTTT
T ss_pred CCEEEEEcCCC-----eEEEEECCCCCcccceeeEEEeC--CCCCEEEEEECCCCCEEEEEcccc-----cceEEeeccc
Confidence 46777787654 46666665432 122211100 0111112222 2567777777654 4677777776
Q ss_pred cEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee----
Q 006334 114 EWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI---- 189 (650)
Q Consensus 114 ~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~---- 189 (650)
........ ............++.+++.|+.+ ..+.+||.....-..... .........+.+
T Consensus 119 ~~~~~~~~----~~~~~~~~~~~~~~~~l~s~s~d-------~~~~~~d~~~~~~~~~~~----~~~~~~v~~~~~~~~~ 183 (340)
T 4aow_A 119 TTTRRFVG----HTKDVLSVAFSSDNRQIVSGSRD-------KTIKLWNTLGVCKYTVQD----ESHSEWVSCVRFSPNS 183 (340)
T ss_dssp EEEEEEEC----CSSCEEEEEECTTSSCEEEEETT-------SCEEEECTTSCEEEEECS----SSCSSCEEEEEECSCS
T ss_pred ceeeeecC----CCCceeEEEEeecCccceeecCC-------CeEEEEEeCCCceEEEEe----ccccCcccceEEccCC
Confidence 54443111 11122223333456666777653 235667765443222111 111111112221
Q ss_pred cCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEE-ECCEEEEEeccCCCcccCeEEEEECCCCcE
Q 006334 190 ANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAIN-IGTKVYIIGGVGDKHYYNDIWILNVSTCSW 268 (650)
Q Consensus 190 ~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~-~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W 268 (650)
.+.+++.|+.+ ..+..||+.+.+....-. . .. ..-.+++. .++++++.|+.+ ..+.+||+.+..-
T Consensus 184 ~~~~~~s~~~d-----~~i~i~d~~~~~~~~~~~--~-h~-~~v~~~~~s~~~~~l~s~s~D-----g~i~iwd~~~~~~ 249 (340)
T 4aow_A 184 SNPIIVSCGWD-----KLVKVWNLANCKLKTNHI--G-HT-GYLNTVTVSPDGSLCASGGKD-----GQAMLWDLNEGKH 249 (340)
T ss_dssp SSCEEEEEETT-----SCEEEEETTTTEEEEEEC--C-CS-SCEEEEEECTTSSEEEEEETT-----CEEEEEETTTTEE
T ss_pred CCcEEEEEcCC-----CEEEEEECCCCceeeEec--C-CC-CcEEEEEECCCCCEEEEEeCC-----CeEEEEEeccCce
Confidence 23466666654 368889988776543321 1 11 11122222 245777777754 3588889887654
Q ss_pred E
Q 006334 269 S 269 (650)
Q Consensus 269 ~ 269 (650)
.
T Consensus 250 ~ 250 (340)
T 4aow_A 250 L 250 (340)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=90.20 E-value=16 Score=36.41 Aligned_cols=204 Identities=11% Similarity=0.089 Sum_probs=102.1
Q ss_pred cceeEEEEE-CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCcCcCeE
Q 006334 28 RWGHSACYS-HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW-GHKMIVFGGTNGYKKVNDL 105 (650)
Q Consensus 28 R~ghs~v~~-~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~-~~~lyVfGG~~~~~~~ndv 105 (650)
.....+++. ++.||+.-- ....+++||+... ....... +..-+.+++. ++++||...... ...+
T Consensus 32 ~~pegia~~~~g~lyv~d~-----~~~~I~~~d~~g~-~~~~~~~-----~~~p~gia~~~dG~l~vad~~~~---~~~v 97 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNH-----EVGEIVSITPDGN-QQIHATV-----EGKVSGLAFTSNGDLVATGWNAD---SIPV 97 (306)
T ss_dssp CCEEEEEECTTSCEEEEET-----TTTEEEEECTTCC-EEEEEEC-----SSEEEEEEECTTSCEEEEEECTT---SCEE
T ss_pred CCcceEEECCCCCEEEEeC-----CCCeEEEECCCCc-eEEEEeC-----CCCceeEEEcCCCcEEEEeccCC---cceE
Confidence 444455543 467888643 2346899998864 3333222 1223444443 577888653211 1258
Q ss_pred EEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCc---eeeccc-cCCCCCC-
Q 006334 106 HILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMR---WASPAV-KGDIPVP- 180 (650)
Q Consensus 106 ~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~---Wt~i~~-~~~lP~~- 180 (650)
++||..+.+.+.+. ..+..+.....+...++.+|+.-- ....+|++|+.+.. |..-.. ....+..
T Consensus 98 ~~~d~~~g~~~~~~---~~~~~~~~~g~~~~~~~~~~v~d~-------~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~ 167 (306)
T 2p4o_A 98 VSLVKSDGTVETLL---TLPDAIFLNGITPLSDTQYLTADS-------YRGAIWLIDVVQPSGSIWLEHPMLARSNSESV 167 (306)
T ss_dssp EEEECTTSCEEEEE---ECTTCSCEEEEEESSSSEEEEEET-------TTTEEEEEETTTTEEEEEEECGGGSCSSTTCC
T ss_pred EEEcCCCCeEEEEE---eCCCccccCcccccCCCcEEEEEC-------CCCeEEEEeCCCCcEeEEEECCccccccccCC
Confidence 89998888876652 223334444444444566776421 12479999987542 211000 0001101
Q ss_pred -CCcceeeeecCEEEEEeccCCCCccCeEEEEECCC-CcE---EEeeecCCCCCcccceEEEEECCEEEEEeccCCCccc
Q 006334 181 -RDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNS-LTW---SRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYY 255 (650)
Q Consensus 181 -R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t-~~W---~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~ 255 (650)
.....+...++.||+.-- ..+.+++||++. .+. ..+.. .. .-...++.-+++||+.-. ..
T Consensus 168 ~~~pngis~dg~~lyv~d~-----~~~~I~~~~~~~~g~~~~~~~~~~---~~--~P~gi~vd~dG~l~va~~-----~~ 232 (306)
T 2p4o_A 168 FPAANGLKRFGNFLYVSNT-----EKMLLLRIPVDSTDKPGEPEIFVE---QT--NIDDFAFDVEGNLYGATH-----IY 232 (306)
T ss_dssp SCSEEEEEEETTEEEEEET-----TTTEEEEEEBCTTSCBCCCEEEEE---SC--CCSSEEEBTTCCEEEECB-----TT
T ss_pred CCcCCCcCcCCCEEEEEeC-----CCCEEEEEEeCCCCCCCccEEEec---cC--CCCCeEECCCCCEEEEeC-----CC
Confidence 111122222457887632 236899999864 221 11111 11 111222223567888732 23
Q ss_pred CeEEEEECCCCcEEEe
Q 006334 256 NDIWILNVSTCSWSQL 271 (650)
Q Consensus 256 ~dv~~yD~~t~~W~~l 271 (650)
+.|.+||+. .+...+
T Consensus 233 ~~V~~~~~~-G~~~~~ 247 (306)
T 2p4o_A 233 NSVVRIAPD-RSTTII 247 (306)
T ss_dssp CCEEEECTT-CCEEEE
T ss_pred CeEEEECCC-CCEEEE
Confidence 579999986 444433
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=90.06 E-value=26 Score=38.74 Aligned_cols=76 Identities=16% Similarity=0.208 Sum_probs=44.1
Q ss_pred cCeEEEEECCCCc--EEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCc--EEEeecCCCCCCC
Q 006334 205 HGDIDMLDMNSLT--WSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCS--WSQLDTCGQQPQG 280 (650)
Q Consensus 205 ~n~v~~yd~~t~~--W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~--W~~l~~~~~~p~~ 280 (650)
...++.+|+.+.+ |+.-.. .+.....++..++.+|+ |.. ...++.||.++.+ |+.-. +..
T Consensus 443 ~g~l~a~D~~tG~~~W~~~~~-----~~~~~~~~~t~gg~v~~-g~~-----dg~l~a~D~~tG~~lw~~~~-----~~~ 506 (571)
T 2ad6_A 443 MGQIRAFDLTTGKAKWTKWEK-----FAAWGGTLYTKGGLVWY-ATL-----DGYLKALDNKDGKELWNFKM-----PSG 506 (571)
T ss_dssp CEEEEEECTTTCCEEEEEEES-----SCCCSBCEEETTTEEEE-ECT-----TSEEEEEETTTCCEEEEEEC-----SSC
T ss_pred CCeEEEEECCCCCEEEEecCC-----CCccceeEEECCCEEEE-EcC-----CCeEEEEECCCCCEEEEEeC-----CCC
Confidence 3679999988765 876431 11222334455777777 322 2579999998765 76532 112
Q ss_pred cceeEEE-EECCeEEEE
Q 006334 281 RFSHAAV-VTGSDIVIY 296 (650)
Q Consensus 281 R~~hsav-~~~~~lyV~ 296 (650)
..+..++ ..++++||.
T Consensus 507 ~~~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 507 GIGSPMTYSFKGKQYIG 523 (571)
T ss_dssp CCSCCEEEEETTEEEEE
T ss_pred cEeeeEEEEECCEEEEE
Confidence 2222233 268888776
|
| >1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A* | Back alignment and structure |
|---|
Probab=89.99 E-value=16 Score=39.55 Aligned_cols=158 Identities=13% Similarity=0.022 Sum_probs=87.7
Q ss_pred EEEEECCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcce-EEEEE--CCEEEEEcccCCCcCcCeEEEE
Q 006334 32 SACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSH-SAILW--GHKMIVFGGTNGYKKVNDLHIL 108 (650)
Q Consensus 32 s~v~~~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~h-sa~~~--~~~lyVfGG~~~~~~~ndv~~y 108 (650)
+++.+++.+|+|=| +.+|+++.....+.........|.--... ++... ++++|+|=| +.+|+|
T Consensus 267 Ai~~~~ge~y~Fkg-------~~~wr~~~~~~~~~p~~I~~~Wp~LP~~iDAa~~~~~~g~~~fFKg-------~~~W~~ 332 (450)
T 1su3_A 267 AITTIRGEVMFFKD-------RFYMRTNPFYPEVELNFISVFWPQLPNGLEAAYEFADRDEVRFFKG-------NKYWAV 332 (450)
T ss_dssp EEEEETTEEEEEET-------TEEEECCTTSSSCEEEEGGGTCTTSCSSCCEEEEEGGGTEEEEEET-------TEEEEE
T ss_pred eEEecCCeEEEEeC-------CEEEEEcCCCCcccceehhHhccCCCCCeeEEEEEcCCCeEEEEeC-------CEEEEe
Confidence 45568999999998 36788876655554433322222111112 22222 689999987 578888
Q ss_pred ECCCC--cE-Eeee-cCCCCCCCCcccEEEEEc-CCEEEEEccccCCCCcccceEEEEecCCCceee-----cc-ccCCC
Q 006334 109 DLESK--EW-MRPE-CRGAPPSPRESHTATLVG-DDKMVIFGGSGEGEANYLNDLHVLDLKTMRWAS-----PA-VKGDI 177 (650)
Q Consensus 109 D~~t~--~W-~~l~-~~~~~P~~R~~hs~~~~~-~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~-----i~-~~~~l 177 (650)
+..+- .+ +.+. ..+-+..+..--++.... ++++|+|-|. ..|+||..+.+-.. +. .-..+
T Consensus 333 ~~~~~~~gyP~~i~~~~g~P~~~~~IDAA~~~~~~~k~yfFkG~---------~yw~yd~~~~~~~~gYPk~I~~~fpgi 403 (450)
T 1su3_A 333 QGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVAN---------KYWRYDEYKRSMDPGYPKMIAHDFPGI 403 (450)
T ss_dssp ETTEECTTCSEEHHHHHCCCTTCCCCCEEEEETTTTEEEEEETT---------EEEEEETTTTEECSSCSEEHHHHSTTS
T ss_pred cCCcccCCCceeeehhhcCCCCCCccceEEEEcCCCeEEEEeCC---------EEEEEeCCCccccCCCCcchhhcCCCC
Confidence 74321 01 1121 011111122233444443 5899999773 58999976543221 11 00122
Q ss_pred CCCCCcceeeeecCEEEEEeccCCCCccCeEEEEECCCCcEEEe
Q 006334 178 PVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRL 221 (650)
Q Consensus 178 P~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i 221 (650)
| ..--+++..++++|+|-| +..|+||..+.+-...
T Consensus 404 p--~~iDAA~~~~g~~YFFkg-------~~ywr~d~~~~~v~~~ 438 (450)
T 1su3_A 404 G--HKVDAVFMKDGFFYFFHG-------TRQYKFDPKTKRILTL 438 (450)
T ss_dssp C--SCCSEEEEETTEEEEEET-------TEEEEEETTTTEEEEE
T ss_pred C--CCccEEEEcCCeEEEEeC-------CEEEEEECCcceEecc
Confidence 2 222344456899999988 6889999888765543
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=89.74 E-value=4.3 Score=49.00 Aligned_cols=187 Identities=12% Similarity=0.082 Sum_probs=93.2
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEECCCCcEE
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESKEWM 116 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~ 116 (650)
++..++.|+.+ ..+++||..+......... . .......+...+++.++.|+.++ .+..+|..+....
T Consensus 972 ~g~~l~~g~~~-----g~i~i~d~~~~~~~~~~~~-h--~~~v~~l~~s~dg~~l~s~~~dg-----~i~vwd~~~~~~~ 1038 (1249)
T 3sfz_A 972 HLEYVAFGDED-----GAIKIIELPNNRVFSSGVG-H--KKAVRHIQFTADGKTLISSSEDS-----VIQVWNWQTGDYV 1038 (1249)
T ss_dssp TSSEEEEEETT-----SCCEEEETTTTSCEEECCC-C--SSCCCCEEECSSSSCEEEECSSS-----BEEEEETTTTEEE
T ss_pred CCCEEEEEcCC-----CCEEEEEcCCCceeeeccc-C--CCceEEEEECCCCCEEEEEcCCC-----EEEEEECCCCceE
Confidence 35566666543 3578888877654332111 1 11112222233667777776543 5888999888776
Q ss_pred eeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeeecCEEEEE
Q 006334 117 RPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVY 196 (650)
Q Consensus 117 ~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~ 196 (650)
.+. ........+....++. ++.|+.+ ..+.+||+.+.+-...- ..........+..-++.+++.
T Consensus 1039 ~~~-----~~~~~v~~~~~~~~~~-l~~~~~d-------g~v~vwd~~~~~~~~~~---~~~~~~v~~~~~s~d~~~l~s 1102 (1249)
T 3sfz_A 1039 FLQ-----AHQETVKDFRLLQDSR-LLSWSFD-------GTVKVWNVITGRIERDF---TCHQGTVLSCAISSDATKFSS 1102 (1249)
T ss_dssp CCB-----CCSSCEEEEEECSSSE-EEEEESS-------SEEEEEETTTTCCCEEE---ECCSSCCCCEEECSSSSSCEE
T ss_pred EEe-----cCCCcEEEEEEcCCCc-EEEEECC-------CcEEEEECCCCceeEEE---cccCCcEEEEEECCCCCEEEE
Confidence 531 1112222333333444 5555553 35888898776533211 001111111122235666777
Q ss_pred eccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEE--ECCEEEEEeccCCCcccCeEEEEECCCCc
Q 006334 197 GGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAIN--IGTKVYIIGGVGDKHYYNDIWILNVSTCS 267 (650)
Q Consensus 197 GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~--~~~~IyI~GG~~~~~~~~dv~~yD~~t~~ 267 (650)
|+.++ .+..||..+..- +. ..........++. .++++++.|+.++ .+.+||+.+.+
T Consensus 1103 ~s~d~-----~v~iwd~~~~~~--~~---~l~~h~~~v~~~~~s~dg~~lat~~~dg-----~i~vwd~~~~~ 1160 (1249)
T 3sfz_A 1103 TSADK-----TAKIWSFDLLSP--LH---ELKGHNGCVRCSAFSLDGILLATGDDNG-----EIRIWNVSDGQ 1160 (1249)
T ss_dssp ECCSS-----CCCEECSSSSSC--SB---CCCCCSSCEEEEEECSSSSEEEEEETTS-----CCCEEESSSSC
T ss_pred EcCCC-----cEEEEECCCcce--ee---eeccCCCcEEEEEECCCCCEEEEEeCCC-----EEEEEECCCCc
Confidence 77553 566777665431 11 1111111122222 3567777777543 47788887654
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=89.51 E-value=32 Score=38.97 Aligned_cols=120 Identities=15% Similarity=0.155 Sum_probs=67.3
Q ss_pred EEECCEEEEEcccCCCcCcCeEEEEECCCCc--EEeeecCCCCCC-----C---CcccEEEEEcCCEEEEEccccCCCCc
Q 006334 84 ILWGHKMIVFGGTNGYKKVNDLHILDLESKE--WMRPECRGAPPS-----P---RESHTATLVGDDKMVIFGGSGEGEAN 153 (650)
Q Consensus 84 ~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~--W~~l~~~~~~P~-----~---R~~hs~~~~~~~~Lyv~GG~~~~~~~ 153 (650)
++.++.||+... .+.++.+|..+.+ |+.-. ..+. . ....+.+ +.+++||+...
T Consensus 67 ~v~~g~vyv~~~------~~~v~AlD~~tG~~~W~~~~---~~~~~~~~~~~~~~~~~~~~-~~~g~v~v~~~------- 129 (689)
T 1yiq_A 67 IVVDGVMYTTGP------FSVVYALDARDGRLIWKYDP---QSDRHRAGEACCDAVNRGVA-VWKGKVYVGVL------- 129 (689)
T ss_dssp EEETTEEEEECG------GGCEEEEETTTCCEEEEECC---CCCGGGGGGCTTCSCCCCCE-EETTEEEEECT-------
T ss_pred EEECCEEEEEcC------CCeEEEEECCCCceeEEEcC---CCCccccccccccCCCCccE-EECCEEEEEcc-------
Confidence 567999999764 2469999998774 87621 1110 0 0011223 33678777432
Q ss_pred ccceEEEEecCCC--ceeeccccCCCCCCCCcceeeeecCEEEEEeccCCCCccCeEEEEECCCCc--EEEe
Q 006334 154 YLNDLHVLDLKTM--RWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLT--WSRL 221 (650)
Q Consensus 154 ~~~dv~~yd~~t~--~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~--W~~i 221 (650)
-..++.+|.++. .|+.-.............+.++.++.+|+-.+.........++.||..+.+ |+.-
T Consensus 130 -dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 130 -DGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp -TSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred -CCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEec
Confidence 135889998776 487532101000011223445668888774332222245689999998776 8764
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=89.50 E-value=33 Score=40.65 Aligned_cols=199 Identities=11% Similarity=0.107 Sum_probs=103.9
Q ss_pred EEECCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEECCCC
Q 006334 34 CYSHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESK 113 (650)
Q Consensus 34 v~~~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~ 113 (650)
+...+.+++.+..++ ...+|.+|........+.... .....+...+++.++++. ...++.+|+...
T Consensus 210 ~~s~d~l~~~~~~dg---~~~l~~~~~~g~~~~~l~~~~-----~~~~~~~SpDG~~la~~~------~~~i~~~d~~~~ 275 (1045)
T 1k32_A 210 VIVGHRIYFITDIDG---FGQIYSTDLDGKDLRKHTSFT-----DYYPRHLNTDGRRILFSK------GGSIYIFNPDTE 275 (1045)
T ss_dssp EEETTEEEEEECTTS---SCEEEEEETTSCSCEECCCCC-----SSCEEEEEESSSCEEEEE------TTEEEEECTTTC
T ss_pred EEeCCEEEEEEeccC---ceEEEEEeCCCCcceEecCCC-----CcceeeEcCCCCEEEEEe------CCEEEEecCCce
Confidence 344666666654322 346898998766555554321 111223345666556552 357899988665
Q ss_pred cEEeeecCCCCCC------CCcccEEEEE-cCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCccee
Q 006334 114 EWMRPECRGAPPS------PRESHTATLV-GDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSS 186 (650)
Q Consensus 114 ~W~~l~~~~~~P~------~R~~hs~~~~-~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~ 186 (650)
....+........ ......+... .+++.++++.. ..++.++..+.....+. ..+..+.....
T Consensus 276 ~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~--------~~i~~~~~~~~~~~~~~---~~~~~~~~~~~ 344 (1045)
T 1k32_A 276 KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSR--------GQAFIQDVSGTYVLKVP---EPLRIRYVRRG 344 (1045)
T ss_dssp CEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEET--------TEEEEECTTSSBEEECS---CCSCEEEEEEC
T ss_pred EeeeeccCcccccccccccccccceeeecCCCCCEEEEEEc--------CEEEEEcCCCCceEEcc---CCCcceEEeee
Confidence 5544321100000 0123445555 56665555542 35888888776654432 11110111112
Q ss_pred eeecCEEEEEeccCCCCccCeEE-EEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCC
Q 006334 187 NVIANRLFVYGGDCGDQYHGDID-MLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVST 265 (650)
Q Consensus 187 v~~~~~Iyv~GG~~~~~~~n~v~-~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t 265 (650)
.. +++.+++++. ...++ .||..+.....+. +. .......+..-+++.++++... .+++++|+.+
T Consensus 345 ~s-dg~~l~~~s~-----~~~l~~~~d~~~~~~~~l~--~~--~~~~~~~~~SpDG~~la~~~~~-----~~v~~~d~~t 409 (1045)
T 1k32_A 345 GD-TKVAFIHGTR-----EGDFLGIYDYRTGKAEKFE--EN--LGNVFAMGVDRNGKFAVVANDR-----FEIMTVDLET 409 (1045)
T ss_dssp SS-SEEEEEEEET-----TEEEEEEEETTTCCEEECC--CC--CCSEEEEEECTTSSEEEEEETT-----SEEEEEETTT
T ss_pred Ec-CCCeEEEEEC-----CCceEEEEECCCCCceEec--CC--ccceeeeEECCCCCEEEEECCC-----CeEEEEECCC
Confidence 22 5555555443 25788 9999887766553 11 1122222222345666665432 4899999999
Q ss_pred CcEEEee
Q 006334 266 CSWSQLD 272 (650)
Q Consensus 266 ~~W~~l~ 272 (650)
.+-..+.
T Consensus 410 g~~~~~~ 416 (1045)
T 1k32_A 410 GKPTVIE 416 (1045)
T ss_dssp CCEEEEE
T ss_pred CceEEec
Confidence 8877664
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=89.46 E-value=20 Score=36.36 Aligned_cols=186 Identities=10% Similarity=0.037 Sum_probs=96.1
Q ss_pred EEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEc-CCEEEEEccccCCCCcccceEEEEecCCCc
Q 006334 89 KMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVG-DDKMVIFGGSGEGEANYLNDLHVLDLKTMR 167 (650)
Q Consensus 89 ~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~-~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~ 167 (650)
++++.|+.++ .+.+||..+.+....... ......-.++.... ++.+++.|+.+ ..+.+||+.+..
T Consensus 87 ~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~l~s~~~d-------~~i~iwd~~~~~ 152 (383)
T 3ei3_B 87 TTVAVGSKGG-----DIILWDYDVQNKTSFIQG--MGPGDAITGMKFNQFNTNQLFVSSIR-------GATTLRDFSGSV 152 (383)
T ss_dssp TEEEEEEBTS-----CEEEEETTSTTCEEEECC--CSTTCBEEEEEEETTEEEEEEEEETT-------TEEEEEETTSCE
T ss_pred CEEEEEcCCC-----eEEEEeCCCcccceeeec--CCcCCceeEEEeCCCCCCEEEEEeCC-------CEEEEEECCCCc
Confidence 6777777643 588899988776554110 01112223344444 34677777653 358888988766
Q ss_pred eeeccccCCCCCCCCcceeeee-cCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEE-CCE-EE
Q 006334 168 WASPAVKGDIPVPRDSHSSNVI-ANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINI-GTK-VY 244 (650)
Q Consensus 168 Wt~i~~~~~lP~~R~~hs~v~~-~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~-~~~-Iy 244 (650)
...+..... ....-.++... ++.+++.|+.+ ..+..||+.......+... ...-.+++.. ++. ++
T Consensus 153 ~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~h-----~~~v~~~~~~~~~~~~l 220 (383)
T 3ei3_B 153 IQVFAKTDS--WDYWYCCVDVSVSRQMLATGDST-----GRLLLLGLDGHEIFKEKLH-----KAKVTHAEFNPRCDWLM 220 (383)
T ss_dssp EEEEECCCC--SSCCEEEEEEETTTTEEEEEETT-----SEEEEEETTSCEEEEEECS-----SSCEEEEEECSSCTTEE
T ss_pred eEEEeccCC--CCCCeEEEEECCCCCEEEEECCC-----CCEEEEECCCCEEEEeccC-----CCcEEEEEECCCCCCEE
Confidence 654431110 01111122222 45677777655 4789999865554444311 1111222222 234 77
Q ss_pred EEeccCCCcccCeEEEEECCC----CcEEEeecCCCCCCCcceeEEEEE--CCeEEEEcCCCCCCCCCCcEEEEecCC
Q 006334 245 IIGGVGDKHYYNDIWILNVST----CSWSQLDTCGQQPQGRFSHAAVVT--GSDIVIYGGCGEDERPLNELLVLQLGA 316 (650)
Q Consensus 245 I~GG~~~~~~~~dv~~yD~~t----~~W~~l~~~~~~p~~R~~hsav~~--~~~lyV~GG~~~~~~~~~d~~~l~l~~ 316 (650)
+.|+.+ ..+.+||+.+ ........ ....-.++.+. ++.+++.|+.+ ..+.++++..
T Consensus 221 ~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~~l~~~~~d------~~i~iwd~~~ 282 (383)
T 3ei3_B 221 ATSSVD-----ATVKLWDLRNIKDKNSYIAEMP-----HEKPVNAAYFNPTDSTKLLTTDQR------NEIRVYSSYD 282 (383)
T ss_dssp EEEETT-----SEEEEEEGGGCCSTTCEEEEEE-----CSSCEEEEEECTTTSCEEEEEESS------SEEEEEETTB
T ss_pred EEEeCC-----CEEEEEeCCCCCcccceEEEec-----CCCceEEEEEcCCCCCEEEEEcCC------CcEEEEECCC
Confidence 777653 3688999886 33333211 11111223332 45677777642 3577777753
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=89.44 E-value=20 Score=36.42 Aligned_cols=137 Identities=14% Similarity=0.089 Sum_probs=71.5
Q ss_pred ceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE---CCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCc
Q 006334 53 GDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW---GHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRE 129 (650)
Q Consensus 53 ~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~---~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~ 129 (650)
..+.++|+.+......-.. . . ..-.++.+. ++.+++.|+.++ .+..+|+.+.+....- . .....
T Consensus 176 ~~v~lwd~~~~~~~~~~~~-h-~--~~v~~~~~~~~~~g~~l~sgs~Dg-----~v~~wd~~~~~~~~~~-~---~h~~~ 242 (354)
T 2pbi_B 176 GTCALWDVESGQLLQSFHG-H-G--ADVLCLDLAPSETGNTFVSGGCDK-----KAMVWDMRSGQCVQAF-E---THESD 242 (354)
T ss_dssp SEEEEEETTTCCEEEEEEC-C-S--SCEEEEEECCCSSCCEEEEEETTS-----CEEEEETTTCCEEEEE-C---CCSSC
T ss_pred CcEEEEeCCCCeEEEEEcC-C-C--CCeEEEEEEeCCCCCEEEEEeCCC-----eEEEEECCCCcEEEEe-c---CCCCC
Confidence 3578889887765432211 1 0 011122221 356777887654 5788999887754421 1 01111
Q ss_pred ccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee--cCEEEEEeccCCCCccCe
Q 006334 130 SHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI--ANRLFVYGGDCGDQYHGD 207 (650)
Q Consensus 130 ~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~--~~~Iyv~GG~~~~~~~n~ 207 (650)
-.++....++.+++.|+.+ ..+.+||+.+..-..+- ...........+.+ ++.+++.|+.+ ..
T Consensus 243 v~~v~~~p~~~~l~s~s~D-------~~v~lwd~~~~~~~~~~---~~~~~~~~~~~~~~s~~g~~l~~g~~d-----~~ 307 (354)
T 2pbi_B 243 VNSVRYYPSGDAFASGSDD-------ATCRLYDLRADREVAIY---SKESIIFGASSVDFSLSGRLLFAGYND-----YT 307 (354)
T ss_dssp EEEEEECTTSSEEEEEETT-------SCEEEEETTTTEEEEEE---CCTTCCSCEEEEEECTTSSEEEEEETT-----SC
T ss_pred eEEEEEeCCCCEEEEEeCC-------CeEEEEECCCCcEEEEE---cCCCcccceeEEEEeCCCCEEEEEECC-----Cc
Confidence 2233333467778888763 24778898765432211 11111112222322 46677776654 47
Q ss_pred EEEEECCCCc
Q 006334 208 IDMLDMNSLT 217 (650)
Q Consensus 208 v~~yd~~t~~ 217 (650)
+.+||..+..
T Consensus 308 i~vwd~~~~~ 317 (354)
T 2pbi_B 308 INVWDVLKGS 317 (354)
T ss_dssp EEEEETTTCS
T ss_pred EEEEECCCCc
Confidence 8889986654
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=89.28 E-value=19 Score=35.97 Aligned_cols=205 Identities=12% Similarity=-0.025 Sum_probs=102.4
Q ss_pred EEEEE--CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEcccCC---------
Q 006334 32 SACYS--HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW--GHKMIVFGGTNG--------- 98 (650)
Q Consensus 32 s~v~~--~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~--~~~lyVfGG~~~--------- 98 (650)
.+++. ++.|||.-.. ..+++||+.+...+.+...........-..+++. ++.|||.-..+.
T Consensus 84 gi~~~~~~g~l~v~d~~------~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~ 157 (322)
T 2fp8_A 84 DISYNLQNNQLYIVDCY------YHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQI 157 (322)
T ss_dssp EEEEETTTTEEEEEETT------TEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHH
T ss_pred eEEEcCCCCcEEEEECC------CCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCccccccccccee
Confidence 34444 5789886321 2488999887655554321110001122334443 578888532211
Q ss_pred ---CcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCC-EEEEEccccCCCCcccceEEEEecCCC---ceeec
Q 006334 99 ---YKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDD-KMVIFGGSGEGEANYLNDLHVLDLKTM---RWASP 171 (650)
Q Consensus 99 ---~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~-~Lyv~GG~~~~~~~~~~dv~~yd~~t~---~Wt~i 171 (650)
......+++||+.+.+.+.+... . ..-..+++..++ .||+.-.. .+.+++|++... .++.+
T Consensus 158 ~~~~~~~g~v~~~d~~~~~~~~~~~~--~---~~p~gia~~~dg~~lyv~d~~-------~~~I~~~~~~~~~~~~~~~~ 225 (322)
T 2fp8_A 158 MDTSDKTGRLIKYDPSTKETTLLLKE--L---HVPGGAEVSADSSFVLVAEFL-------SHQIVKYWLEGPKKGTAEVL 225 (322)
T ss_dssp HHHTCCCEEEEEEETTTTEEEEEEEE--E---SCCCEEEECTTSSEEEEEEGG-------GTEEEEEESSSTTTTCEEEE
T ss_pred hcccCCCceEEEEeCCCCEEEEeccC--C---ccCcceEECCCCCEEEEEeCC-------CCeEEEEECCCCcCCccceE
Confidence 01235699999988776543111 1 112334444444 47775322 246899998753 33322
Q ss_pred cccCCCCCCCCcceeee-ecCEEEEEeccCCC-----CccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEE
Q 006334 172 AVKGDIPVPRDSHSSNV-IANRLFVYGGDCGD-----QYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYI 245 (650)
Q Consensus 172 ~~~~~lP~~R~~hs~v~-~~~~Iyv~GG~~~~-----~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI 245 (650)
. .++.| ..++. -++.||+....... .....+.+||+.......+......+ .....+++..+++|||
T Consensus 226 ~---~~~gP---~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~-~~~~~~~~~~~g~L~v 298 (322)
T 2fp8_A 226 V---KIPNP---GNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFA-GEHFEQIQEHDGLLYI 298 (322)
T ss_dssp E---ECSSE---EEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTT-TSCCCEEEEETTEEEE
T ss_pred E---eCCCC---CCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCc-cccceEEEEeCCEEEE
Confidence 2 12211 11222 24678887542100 11356899998765555554211111 1223334456789998
Q ss_pred EeccCCCcccCeEEEEECCCC
Q 006334 246 IGGVGDKHYYNDIWILNVSTC 266 (650)
Q Consensus 246 ~GG~~~~~~~~dv~~yD~~t~ 266 (650)
... ..+.|.+|++..+
T Consensus 299 ~~~-----~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 299 GTL-----FHGSVGILVYDKK 314 (322)
T ss_dssp ECS-----SCSEEEEEEC---
T ss_pred eec-----CCCceEEEecccc
Confidence 742 2356888887643
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=89.20 E-value=19 Score=35.92 Aligned_cols=234 Identities=9% Similarity=-0.089 Sum_probs=117.8
Q ss_pred ceEEEEECCCCcEEEeecCCCC---------------CCCCcceEEEEE--CCEEEEEcccCCCcCcCeEEEEECCCCcE
Q 006334 53 GDVLMLNLDTMVWSTLATTGQG---------------PGPRDSHSAILW--GHKMIVFGGTNGYKKVNDLHILDLESKEW 115 (650)
Q Consensus 53 ~dv~~yD~~t~sW~~l~~~g~~---------------P~pR~~hsa~~~--~~~lyVfGG~~~~~~~ndv~~yD~~t~~W 115 (650)
..+++||+.+..+......... +....-+++++. +++|||.-.. +.+++||+.+...
T Consensus 40 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~------~~i~~~d~~~g~~ 113 (322)
T 2fp8_A 40 GRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCY------YHLSVVGSEGGHA 113 (322)
T ss_dssp SEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETT------TEEEEECTTCEEC
T ss_pred CeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECC------CCEEEEeCCCCEE
Confidence 5689999988777665422100 000112455555 5789986322 3488999887655
Q ss_pred EeeecCCCCCCCCcccEEEEEc-CCEEEEEccccCCC----------CcccceEEEEecCCCceeeccccCCCCCCCCcc
Q 006334 116 MRPECRGAPPSPRESHTATLVG-DDKMVIFGGSGEGE----------ANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSH 184 (650)
Q Consensus 116 ~~l~~~~~~P~~R~~hs~~~~~-~~~Lyv~GG~~~~~----------~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~h 184 (650)
+.+...........-..+++.. ++.||+.-...... ......+++||+.+.+...+......| .
T Consensus 114 ~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p-----~ 188 (322)
T 2fp8_A 114 TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVP-----G 188 (322)
T ss_dssp EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEESCC-----C
T ss_pred EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCCccC-----c
Confidence 5442111100111223445555 67888853210000 011256999999877665432111111 2
Q ss_pred eeeee-c-CEEEEEeccCCCCccCeEEEEECCC---CcEEEeeecCCCCCcccceEEEEE-CCEEEEEeccCCC-----c
Q 006334 185 SSNVI-A-NRLFVYGGDCGDQYHGDIDMLDMNS---LTWSRLAIIGSSPGVRAGHAAINI-GTKVYIIGGVGDK-----H 253 (650)
Q Consensus 185 s~v~~-~-~~Iyv~GG~~~~~~~n~v~~yd~~t---~~W~~i~~~g~~P~~R~~~s~v~~-~~~IyI~GG~~~~-----~ 253 (650)
.++.. + +.||+.-.. .+.+++|++.. ..++.+.. .+. -..++.. ++.|||.-..... .
T Consensus 189 gia~~~dg~~lyv~d~~-----~~~I~~~~~~~~~~~~~~~~~~---~~g---P~gi~~d~~G~l~va~~~~~~~~~~~~ 257 (322)
T 2fp8_A 189 GAEVSADSSFVLVAEFL-----SHQIVKYWLEGPKKGTAEVLVK---IPN---PGNIKRNADGHFWVSSSEELDGNMHGR 257 (322)
T ss_dssp EEEECTTSSEEEEEEGG-----GTEEEEEESSSTTTTCEEEEEE---CSS---EEEEEECTTSCEEEEEEEETTSSTTSC
T ss_pred ceEECCCCCEEEEEeCC-----CCeEEEEECCCCcCCccceEEe---CCC---CCCeEECCCCCEEEEecCcccccccCC
Confidence 22332 3 358876332 35899999875 34554442 221 1223332 3578887532100 0
Q ss_pred ccCeEEEEECCCCcEEEeecCCCCCCCcceeEEEEECCeEEEEcCCCCCCCCCCcEEEEecC
Q 006334 254 YYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVTGSDIVIYGGCGEDERPLNELLVLQLG 315 (650)
Q Consensus 254 ~~~dv~~yD~~t~~W~~l~~~~~~p~~R~~hsav~~~~~lyV~GG~~~~~~~~~d~~~l~l~ 315 (650)
....+++||+....-..+......+ ...-.+++..++.|||..-. .+.+.++++.
T Consensus 258 ~~~~v~~~d~~G~~~~~~~~~~g~~-~~~~~~~~~~~g~L~v~~~~------~~~i~~~~~~ 312 (322)
T 2fp8_A 258 VDPKGIKFDEFGNILEVIPLPPPFA-GEHFEQIQEHDGLLYIGTLF------HGSVGILVYD 312 (322)
T ss_dssp EEEEEEEECTTSCEEEEEECCTTTT-TSCCCEEEEETTEEEEECSS------CSEEEEEEC-
T ss_pred CccEEEEECCCCCEEEEEECCCCCc-cccceEEEEeCCEEEEeecC------CCceEEEecc
Confidence 1346899998765555554321111 12223444567888887432 2467777764
|
| >1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A* | Back alignment and structure |
|---|
Probab=89.18 E-value=17 Score=39.45 Aligned_cols=224 Identities=19% Similarity=0.233 Sum_probs=114.6
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCc--E-EEeecC-CCCCCCCcceEEEE-----ECCEEEEEcccCCCcCcCeEEE
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMV--W-STLATT-GQGPGPRDSHSAIL-----WGHKMIVFGGTNGYKKVNDLHI 107 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~s--W-~~l~~~-g~~P~pR~~hsa~~-----~~~~lyVfGG~~~~~~~ndv~~ 107 (650)
++.+|+|=| +.+|+|+-.... + ..+... ...|. .-.++... .++++|+|-| +.+|+
T Consensus 107 ~g~~yfFkG-------~~yW~~~~~~~~~GYPk~I~~~fpGlp~-~IDAA~~~~~~~~~~~~~yfFkG-------~~yw~ 171 (460)
T 1qhu_A 107 HTSVYLIKG-------DKVWVYTSEKNEKVYPKSLQDEFPGIPF-PLDAAVECHRGECQDEGILFFQG-------NRKWF 171 (460)
T ss_dssp TTEEEEEET-------TEEEEECC-------CEEHHHHSTTCCS-SCCEEEEECBBTBSSSEEEEEET-------TEEEE
T ss_pred CCcEEEEec-------cEEEEEeCCcccCCCCeEhhhccCCCCC-CeeEEEECCccCCCCCeEEEEec-------ccEEE
Confidence 589999988 468888633210 1 111111 11222 12222211 2678899887 57899
Q ss_pred EECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCc------------eeeccccC
Q 006334 108 LDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMR------------WASPAVKG 175 (650)
Q Consensus 108 yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~------------Wt~i~~~~ 175 (650)
||..+++...-.- ... +. .-++... ++++|+|-|. ..|+||..+.+ |..+...+
T Consensus 172 yd~~~~~~~~~~w-~gi--~~-iDAA~~~-~g~~YfFkG~---------~y~rfd~~~~~v~~gyPk~is~~w~~c~~~g 237 (460)
T 1qhu_A 172 WDLTTGTKKERSW-PAV--GN-CTSALRW-LGRYYCFQGN---------QFLRFNPVSGEVPPGYPLDVRDYFLSCPGRG 237 (460)
T ss_dssp EETTTTEEEEECC-TTS--CC-CSEEEEE-TTEEEEEETT---------EEEEECTTTCCCCTTCCEEHHHHTSCCTTCC
T ss_pred EecccceeecccC-CCC--Cc-cchheee-CCceEEEECC---------EEEEEcCccCcccCCCCcchhhcccCCCCCC
Confidence 9998876543211 111 22 2344444 5899999885 37778765432 32222100
Q ss_pred ------------CCC---CCC-Ccceeee-ecCEEEEEeccCCCCccCeEEEEECCCCcEEEeeec---CCCCCcccceE
Q 006334 176 ------------DIP---VPR-DSHSSNV-IANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAII---GSSPGVRAGHA 235 (650)
Q Consensus 176 ------------~lP---~~R-~~hs~v~-~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~---g~~P~~R~~~s 235 (650)
..| .+. ..-+++. .++++|+|-| +..|++|.....+...... ..+|. .--+
T Consensus 238 ~~~~~~~st~~~~~p~~C~p~~~~DAi~~~~~G~tYFFKg-------~~yWR~~~~~~~~~p~~Is~~WpglP~--~IDA 308 (460)
T 1qhu_A 238 HRSSHRNSTQHGHESTRCDPDLVLSAMVSDNHGATYVFSG-------SHYWRLDTNRDGWHSWPIAHQWPQGPS--TVDA 308 (460)
T ss_dssp SCC-------CCCTTTTTCTTCCCCEEEECTTCCEEEEET-------TEEEECTTGGGCCCCEEGGGTCTTSCS--SCSE
T ss_pred CccccccCCccccccccccCCCCcCEEEecCCCeEEEEeC-------CEEEEEecCCCCcCccchhhhccCCCC--CCcE
Confidence 000 011 1123333 4689999988 5677777654333221111 12232 2334
Q ss_pred EEEECCEEEEEeccCCCcccCeEEEEECCCCcEEEeec--------CCCCCCC----cceeEEEE-ECCeEEEEcCCCCC
Q 006334 236 AINIGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLDT--------CGQQPQG----RFSHAAVV-TGSDIVIYGGCGED 302 (650)
Q Consensus 236 ~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~~--------~~~~p~~----R~~hsav~-~~~~lyV~GG~~~~ 302 (650)
+...++++|+|-| +..|+|+.... .+.++. .+ +|.. +..++... .++++|+|-|
T Consensus 309 Af~~~~~~yfFkG-------~~yw~f~~~~g-~~~~~GyPK~I~~~lG-lp~~~~~~~IDAA~~~~~~~ktyfFkG---- 375 (460)
T 1qhu_A 309 AFSWEDKLYLIQD-------TKVYVFLTKGG-YTLVNGYPKRLEKELG-SPPVISLEAVDAAFVCPGSSRLHIMAG---- 375 (460)
T ss_dssp EEEETTEEEEEET-------TEEEEEECSBS-CEECTTCCEEHHHHHC-CCSSCCCSCCCEEECCTTCCEEEEEET----
T ss_pred EEEECCeEEEEeC-------CEEEEEeCCCC-ceecCCCCeEHHHhcc-CCCccccCcccEEEEeCCCCEEEEEEC----
Confidence 4456789999966 46888986531 222211 11 2221 22222222 2578999976
Q ss_pred CCCCCcEEEEecC
Q 006334 303 ERPLNELLVLQLG 315 (650)
Q Consensus 303 ~~~~~d~~~l~l~ 315 (650)
+..|+++..
T Consensus 376 ----~~ywryd~~ 384 (460)
T 1qhu_A 376 ----RRLWWLDLK 384 (460)
T ss_dssp ----TEEEEEEGG
T ss_pred ----CEEEEEECC
Confidence 468888876
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.16 E-value=6 Score=39.86 Aligned_cols=151 Identities=11% Similarity=0.107 Sum_probs=70.6
Q ss_pred CCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcC--CEEEEEccccCCCCcccceEEEEecC
Q 006334 87 GHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGD--DKMVIFGGSGEGEANYLNDLHVLDLK 164 (650)
Q Consensus 87 ~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~--~~Lyv~GG~~~~~~~~~~dv~~yd~~ 164 (650)
++.+++.|+.++ .+..+|..+..|..+..-.... ..-.++....+ +.+++.|+.+ ..+.+||+.
T Consensus 164 ~~~~l~s~s~D~-----~i~iW~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~~l~s~s~D-------~~v~iw~~~ 229 (330)
T 2hes_X 164 SEALLASSSYDD-----TVRIWKDYDDDWECVAVLNGHE--GTVWSSDFDKTEGVFRLCSGSDD-------STVRVWKYM 229 (330)
T ss_dssp SSSEEEEEETTS-----CEEEEEEETTEEEEEEEECCCS--SCEEEEEECCSSSSCEEEEEETT-------SCEEEEEEE
T ss_pred CCCEEEEEcCCC-----eEEEEECCCCCeeEEEEccCCC--CcEEEEEecCCCCeeEEEEEeCC-------CeEEEEEec
Confidence 567777777654 4666777666666542211111 11112222222 3456666653 235555553
Q ss_pred C------CceeeccccCCCCC--CCCcceeeeecCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEE
Q 006334 165 T------MRWASPAVKGDIPV--PRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAA 236 (650)
Q Consensus 165 t------~~Wt~i~~~~~lP~--~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~ 236 (650)
+ ..|.... .++. ...-.+++...+.+++.||.+ ..+.+||..+..|..+..... ........+
T Consensus 230 ~~~~~~~~~~~~~~---~~~~~h~~~v~~v~~s~~~~l~s~~~d-----g~v~iw~~~~~~~~~~~~~~~-~h~~~~v~~ 300 (330)
T 2hes_X 230 GDDEDDQQEWVCEA---ILPDVHKRQVYNVAWGFNGLIASVGAD-----GVLAVYEEVDGEWKVFAKRAL-CHGVYEINV 300 (330)
T ss_dssp EECTTSCEEEEEEE---ECCSCCSSCEEEEEECTTSCEEEEETT-----SCEEEEEEETTEEEEEEEESC-TTTTSCEEE
T ss_pred CCCccccceeEEee---ecccccccceEEEEEcCCCEEEEEeCC-----CEEEEEEcCCCceEEEecccc-ccccceEEE
Confidence 2 2344332 1211 111122223344566667754 468888888888876543211 111111222
Q ss_pred EEE----CCEEEEEeccCCCcccCeEEEEECCC
Q 006334 237 INI----GTKVYIIGGVGDKHYYNDIWILNVST 265 (650)
Q Consensus 237 v~~----~~~IyI~GG~~~~~~~~dv~~yD~~t 265 (650)
+.. ++++++.||.++ .+.+||+++
T Consensus 301 v~~~~~~~~~~las~s~Dg-----~v~~W~~~~ 328 (330)
T 2hes_X 301 VKWLELNGKTILATGGDDG-----IVNFWSLEK 328 (330)
T ss_dssp EEEC-----CCEEEEETTS-----EEEEEEC--
T ss_pred EEEecCCCceEEEEecCCC-----cEEEEEecc
Confidence 222 356777777543 466777653
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=89.06 E-value=20 Score=35.96 Aligned_cols=203 Identities=14% Similarity=0.133 Sum_probs=101.9
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCC--cEEEeecCCC---CCC-CCcceEEEEE--CCEEEEEcccCCCcCcCeEEEE
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTM--VWSTLATTGQ---GPG-PRDSHSAILW--GHKMIVFGGTNGYKKVNDLHIL 108 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~--sW~~l~~~g~---~P~-pR~~hsa~~~--~~~lyVfGG~~~~~~~ndv~~y 108 (650)
++.||+.... .+.+++||+... .-..+...+. ... -..-..+++. ++.|||..++. .+.+++|
T Consensus 101 ~g~l~v~d~~-----~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~----~~~I~~~ 171 (329)
T 3fvz_A 101 DGNYWVTDVA-----LHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYC----NSRIVQF 171 (329)
T ss_dssp TSCEEEEETT-----TTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSS----CCEEEEE
T ss_pred CCCEEEEECC-----CCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCC----CCeEEEE
Confidence 4567775542 246888887654 2222221110 000 1122344554 58899987521 2578899
Q ss_pred ECCCCcEEeeecCCCC----CCCCc-ccEEEEEcC-CEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCC
Q 006334 109 DLESKEWMRPECRGAP----PSPRE-SHTATLVGD-DKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRD 182 (650)
Q Consensus 109 D~~t~~W~~l~~~~~~----P~~R~-~hs~~~~~~-~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~ 182 (650)
|.....-..+...+.. +.... -+.+++..+ +.||+.... .+.+.+||+++.++...-. .......
T Consensus 172 ~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~-------~~~I~~~~~~~G~~~~~~~--~~~~~~~ 242 (329)
T 3fvz_A 172 SPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE-------NGRIQCFKTDTKEFVREIK--HASFGRN 242 (329)
T ss_dssp CTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT-------TTEEEEEETTTCCEEEEEC--CTTTTTC
T ss_pred cCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC-------CCEEEEEECCCCcEEEEEe--ccccCCC
Confidence 8654433333211111 11111 234444455 789987543 2468999998666543211 1111111
Q ss_pred cceeeeecCEEEEEeccC--CCCccCeEEEEECCCCcEEEeeecCCCCCccc-ceEEEEE-CCEEEEEeccCCCcccCeE
Q 006334 183 SHSSNVIANRLFVYGGDC--GDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRA-GHAAINI-GTKVYIIGGVGDKHYYNDI 258 (650)
Q Consensus 183 ~hs~v~~~~~Iyv~GG~~--~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~-~~s~v~~-~~~IyI~GG~~~~~~~~dv 258 (650)
-..++...+.+|+..|.. .......++++|..+.+....- +....... -..++.. ++.|||.... .+.|
T Consensus 243 ~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~--~~~~~~~~~p~~ia~~~dG~lyvad~~-----~~~I 315 (329)
T 3fvz_A 243 VFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVF--KPVRKHFDMPHDIVASEDGTVYIGDAH-----TNTV 315 (329)
T ss_dssp EEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEE--CCSSSCCSSEEEEEECTTSEEEEEESS-----SCCE
T ss_pred cceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEE--cCCCCccCCeeEEEECCCCCEEEEECC-----CCEE
Confidence 123333346777776632 2233468999998888765542 11111112 2233332 3588888533 3468
Q ss_pred EEEECC
Q 006334 259 WILNVS 264 (650)
Q Consensus 259 ~~yD~~ 264 (650)
++|++.
T Consensus 316 ~~~~~~ 321 (329)
T 3fvz_A 316 WKFTLT 321 (329)
T ss_dssp EEEEEE
T ss_pred EEEeCC
Confidence 888765
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=89.04 E-value=23 Score=42.56 Aligned_cols=220 Identities=9% Similarity=0.070 Sum_probs=105.3
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEE-ECCEEEEEcccCCCcCcCeEEEEECCCCcE
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAIL-WGHKMIVFGGTNGYKKVNDLHILDLESKEW 115 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~-~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W 115 (650)
++.+++.||.+ ..+.+||..+......-.. . ...-.++++ .++++++.|+.+ ..+.++|..+.+.
T Consensus 626 ~~~~l~s~~~d-----~~i~vw~~~~~~~~~~~~~-h---~~~v~~~~~s~~~~~l~s~~~d-----~~v~vwd~~~~~~ 691 (1249)
T 3sfz_A 626 DGQRIASCGAD-----KTLQVFKAETGEKLLDIKA-H---EDEVLCCAFSSDDSYIATCSAD-----KKVKIWDSATGKL 691 (1249)
T ss_dssp TSSEEEEEETT-----SCEEEEETTTCCEEEEECC-C---SSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTCCE
T ss_pred CCCEEEEEeCC-----CeEEEEECCCCCEEEEecc-C---CCCEEEEEEecCCCEEEEEeCC-----CeEEEEECCCCce
Confidence 45666777743 3688999988764332111 1 111122222 256777777653 3588999988765
Q ss_pred EeeecCCCCCCCCcccEEEEEc--CCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee--cC
Q 006334 116 MRPECRGAPPSPRESHTATLVG--DDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI--AN 191 (650)
Q Consensus 116 ~~l~~~~~~P~~R~~hs~~~~~--~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~--~~ 191 (650)
...- .+ ....-.++.... +..+++.|+.+ ..+.+||+.+......- ......-..+.+ ++
T Consensus 692 ~~~~-~~---~~~~v~~~~~~~~~~~~~l~sg~~d-------~~v~vwd~~~~~~~~~~-----~~h~~~v~~~~~sp~~ 755 (1249)
T 3sfz_A 692 VHTY-DE---HSEQVNCCHFTNKSNHLLLATGSND-------FFLKLWDLNQKECRNTM-----FGHTNSVNHCRFSPDD 755 (1249)
T ss_dssp EEEE-EC---CSSCEEEEEECSSSSCCEEEEEETT-------SCEEEEETTSSSEEEEE-----CCCSSCEEEEEECSST
T ss_pred EEEE-cC---CCCcEEEEEEecCCCceEEEEEeCC-------CeEEEEECCCcchhhee-----cCCCCCEEEEEEecCC
Confidence 4321 11 111112222222 33455566542 34888898776543211 111111112222 45
Q ss_pred EEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCC-------CC--c-ccceEEEEECCEEEEEeccCCCcccCeEEEE
Q 006334 192 RLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSS-------PG--V-RAGHAAINIGTKVYIIGGVGDKHYYNDIWIL 261 (650)
Q Consensus 192 ~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~-------P~--~-R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~y 261 (650)
.+++.|+.+ ..+..||+.+..-...-..... +. . .....+...+++.+++++ .+.+..|
T Consensus 756 ~~l~s~s~d-----g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~------~~~v~~~ 824 (1249)
T 3sfz_A 756 ELLASCSAD-----GTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA------KNKVLLF 824 (1249)
T ss_dssp TEEEEEESS-----SEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE------TTEEEEE
T ss_pred CEEEEEECC-----CeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc------CCcEEEE
Confidence 667777655 3688888876653322111000 00 0 111111122445555554 2578999
Q ss_pred ECCCCcEEEeecCCCCCCCcceeEEEEECCeEEEEcCC
Q 006334 262 NVSTCSWSQLDTCGQQPQGRFSHAAVVTGSDIVIYGGC 299 (650)
Q Consensus 262 D~~t~~W~~l~~~~~~p~~R~~hsav~~~~~lyV~GG~ 299 (650)
|+.+.........+ ........+..-++.+++.|+.
T Consensus 825 d~~~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~~ 860 (1249)
T 3sfz_A 825 DIHTSGLLAEIHTG--HHSTIQYCDFSPYDHLAVIALS 860 (1249)
T ss_dssp ETTTCCEEEEEECS--SSSCCCEEEECSSTTEEEEECS
T ss_pred EecCCCceeEEcCC--CCCceEEEEEcCCCCEEEEEeC
Confidence 99888765543211 1111111222225667777664
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=89.02 E-value=9.1 Score=38.07 Aligned_cols=154 Identities=6% Similarity=-0.031 Sum_probs=76.5
Q ss_pred ceEEEEECCCCcEEEeecCCC-CCCCCcceEEEEECCEEEEE----cccCC--------CcCcCeEEEEECCCCcEEeee
Q 006334 53 GDVLMLNLDTMVWSTLATTGQ-GPGPRDSHSAILWGHKMIVF----GGTNG--------YKKVNDLHILDLESKEWMRPE 119 (650)
Q Consensus 53 ~dv~~yD~~t~sW~~l~~~g~-~P~pR~~hsa~~~~~~lyVf----GG~~~--------~~~~ndv~~yD~~t~~W~~l~ 119 (650)
..+++||+. .+.+.+..... .+..+....++.-+++||+. |-... ......+|+||+.+.+++.+.
T Consensus 107 ~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~ 185 (305)
T 3dr2_A 107 RAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA 185 (305)
T ss_dssp TEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE
T ss_pred CEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe
Confidence 358888886 66665532211 01111122222236788884 43221 011357999999888887652
Q ss_pred cCCCCCCCCcccEEEEEcCC-EEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeeecCEEEEEec
Q 006334 120 CRGAPPSPRESHTATLVGDD-KMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGG 198 (650)
Q Consensus 120 ~~~~~P~~R~~hs~~~~~~~-~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG 198 (650)
. . ..-..++...++ .||+...... ....+.+++||+..+...........+.......++.-++.||+..+
T Consensus 186 -~--~---~~p~gl~~spdg~~lyv~~~~~~--~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~ 257 (305)
T 3dr2_A 186 -D--L---DHPNGLAFSPDEQTLYVSQTPEQ--GHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSSG 257 (305)
T ss_dssp -E--E---SSEEEEEECTTSSEEEEEECCC-----CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECCS
T ss_pred -c--C---CCCcceEEcCCCCEEEEEecCCc--CCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEecC
Confidence 1 1 112334444455 4776533210 11125799999876543221111111111111122223467887542
Q ss_pred cCCCCccCeEEEEECCCCcEEEee
Q 006334 199 DCGDQYHGDIDMLDMNSLTWSRLA 222 (650)
Q Consensus 199 ~~~~~~~n~v~~yd~~t~~W~~i~ 222 (650)
+.+++||++......+.
T Consensus 258 -------~gv~~~~~~g~~~~~~~ 274 (305)
T 3dr2_A 258 -------TGVCVFDSDGQLLGHIP 274 (305)
T ss_dssp -------SEEEEECTTSCEEEEEE
T ss_pred -------CcEEEECCCCCEEEEEE
Confidence 46999999777666665
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=88.98 E-value=20 Score=35.93 Aligned_cols=147 Identities=12% Similarity=0.170 Sum_probs=76.3
Q ss_pred CCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCC
Q 006334 87 GHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTM 166 (650)
Q Consensus 87 ~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~ 166 (650)
++. ++.|+.+ ..+..+|+.+.+....- .+ ....-.++....++.+++.|+.+ ..+.+||+.+.
T Consensus 154 ~~~-l~s~s~d-----~~i~~wd~~~~~~~~~~-~~---h~~~v~~~~~~~~~~~l~sg~~d-------~~v~~wd~~~~ 216 (340)
T 1got_B 154 DNQ-IVTSSGD-----TTCALWDIETGQQTTTF-TG---HTGDVMSLSLAPDTRLFVSGACD-------ASAKLWDVREG 216 (340)
T ss_dssp TTE-EEEEETT-----SCEEEEETTTTEEEEEE-CC---CSSCEEEEEECTTSSEEEEEETT-------SCEEEEETTTC
T ss_pred CCc-EEEEECC-----CcEEEEECCCCcEEEEE-cC---CCCceEEEEECCCCCEEEEEeCC-------CcEEEEECCCC
Confidence 555 4455543 35788898887654321 11 11112334444567788888864 25788888765
Q ss_pred ceeeccccCCCCCCCCcceeeee-cCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEE--CCEE
Q 006334 167 RWASPAVKGDIPVPRDSHSSNVI-ANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINI--GTKV 243 (650)
Q Consensus 167 ~Wt~i~~~~~lP~~R~~hs~v~~-~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~--~~~I 243 (650)
.-...- . . . ...-.+++.. ++.+++.|+.+ ..+..||+.+..-...- ...........+.+ ++++
T Consensus 217 ~~~~~~-~-~-h-~~~v~~v~~~p~~~~l~s~s~d-----~~v~iwd~~~~~~~~~~---~~~~~~~~v~~~~~s~~g~~ 284 (340)
T 1got_B 217 MCRQTF-T-G-H-ESDINAICFFPNGNAFATGSDD-----ATCRLFDLRADQELMTY---SHDNIICGITSVSFSKSGRL 284 (340)
T ss_dssp SEEEEE-C-C-C-SSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTTEEEEEE---CCTTCCSCEEEEEECTTSSE
T ss_pred eeEEEE-c-C-C-cCCEEEEEEcCCCCEEEEEcCC-----CcEEEEECCCCcEEEEE---ccCCcccceEEEEECCCCCE
Confidence 432211 0 0 0 0111122222 46677777765 46888998876533221 11111112223332 4577
Q ss_pred EEEeccCCCcccCeEEEEECCCCc
Q 006334 244 YIIGGVGDKHYYNDIWILNVSTCS 267 (650)
Q Consensus 244 yI~GG~~~~~~~~dv~~yD~~t~~ 267 (650)
++.|+.+ ..+.+||+.+..
T Consensus 285 l~~g~~d-----~~i~vwd~~~~~ 303 (340)
T 1got_B 285 LLAGYDD-----FNCNVWDALKAD 303 (340)
T ss_dssp EEEEETT-----SEEEEEETTTCC
T ss_pred EEEECCC-----CeEEEEEcccCc
Confidence 7777653 368899987654
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=88.79 E-value=23 Score=36.37 Aligned_cols=149 Identities=15% Similarity=0.134 Sum_probs=73.5
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCcCcCeEEEEECCCCcE
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW-GHKMIVFGGTNGYKKVNDLHILDLESKEW 115 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~-~~~lyVfGG~~~~~~~ndv~~yD~~t~~W 115 (650)
++.+++.|+.+ ..+.+||..+.+....... . ...-.++.+. ++..++.|+.+ ..+.++|+.+.+.
T Consensus 134 dg~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~-h---~~~v~~~~~~p~~~~l~s~s~d-----~~v~iwd~~~~~~ 199 (393)
T 1erj_A 134 DGKFLATGAED-----RLIRIWDIENRKIVMILQG-H---EQDIYSLDYFPSGDKLVSGSGD-----RTVRIWDLRTGQC 199 (393)
T ss_dssp TSSEEEEEETT-----SCEEEEETTTTEEEEEECC-C---SSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTTEE
T ss_pred CCCEEEEEcCC-----CeEEEEECCCCcEEEEEcc-C---CCCEEEEEEcCCCCEEEEecCC-----CcEEEEECCCCee
Confidence 35666666643 3688899988764433211 1 1112233332 55666667654 3678889988765
Q ss_pred EeeecCCCCCCCCcccEEEEEc-CCEEEEEccccCCCCcccceEEEEecCCCceee-ccccCCCCCC-CCcceeeee--c
Q 006334 116 MRPECRGAPPSPRESHTATLVG-DDKMVIFGGSGEGEANYLNDLHVLDLKTMRWAS-PAVKGDIPVP-RDSHSSNVI--A 190 (650)
Q Consensus 116 ~~l~~~~~~P~~R~~hs~~~~~-~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~-i~~~~~lP~~-R~~hs~v~~--~ 190 (650)
...-. . .....++.... ++.+++.|+.+ ..+.+||+.+..-.. +......... ...-..+.+ +
T Consensus 200 ~~~~~---~--~~~v~~~~~~~~~~~~l~~~s~d-------~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~ 267 (393)
T 1erj_A 200 SLTLS---I--EDGVTTVAVSPGDGKYIAAGSLD-------RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD 267 (393)
T ss_dssp EEEEE---C--SSCEEEEEECSTTCCEEEEEETT-------SCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTT
T ss_pred EEEEE---c--CCCcEEEEEECCCCCEEEEEcCC-------CcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCC
Confidence 43211 0 11122233333 57788888763 247888887764332 1100000000 011111222 4
Q ss_pred CEEEEEeccCCCCccCeEEEEECCCC
Q 006334 191 NRLFVYGGDCGDQYHGDIDMLDMNSL 216 (650)
Q Consensus 191 ~~Iyv~GG~~~~~~~n~v~~yd~~t~ 216 (650)
+.+++.|+.+ ..+..||+.+.
T Consensus 268 g~~l~s~s~d-----~~v~~wd~~~~ 288 (393)
T 1erj_A 268 GQSVVSGSLD-----RSVKLWNLQNA 288 (393)
T ss_dssp SSEEEEEETT-----SEEEEEEC---
T ss_pred CCEEEEEeCC-----CEEEEEECCCC
Confidence 5667777755 46778887653
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=88.65 E-value=20 Score=39.94 Aligned_cols=177 Identities=10% Similarity=-0.022 Sum_probs=86.6
Q ss_pred CCEEEEEccCCCC----cccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEECCC
Q 006334 37 HGAVYIFGGCCGG----LHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLES 112 (650)
Q Consensus 37 ~~~IyvfGG~~~~----~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t 112 (650)
+++.++++..... .....++++|..+.....+..... ...+....+..-+++.++|+.. ++++++|..+
T Consensus 71 Dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~-~~~~~~~~~~SPdG~~la~~~~------~~i~~~~~~~ 143 (723)
T 1xfd_A 71 DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEV-SNAKLQYAGWGPKGQQLIFIFE------NNIYYCAHVG 143 (723)
T ss_dssp TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTC-CSCCCSBCCBCSSTTCEEEEET------TEEEEESSSS
T ss_pred CCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCcc-ccccccccEECCCCCEEEEEEC------CeEEEEECCC
Confidence 4555555553322 224789999999887655543211 1111222233336665555543 4799999888
Q ss_pred CcEEeeecCCCCCC---------------CCcccEEEEEcCCEEEEEccccCCC--------------------------
Q 006334 113 KEWMRPECRGAPPS---------------PRESHTATLVGDDKMVIFGGSGEGE-------------------------- 151 (650)
Q Consensus 113 ~~W~~l~~~~~~P~---------------~R~~hs~~~~~~~~Lyv~GG~~~~~-------------------------- 151 (650)
.+...+...+.... .+ ..+.....+++.++++..+...
T Consensus 144 g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~-~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 222 (723)
T 1xfd_A 144 KQAIRVVSTGKEGVIYNGLSDWLYEEEILKT-HIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAG 222 (723)
T ss_dssp SCCEEEECCCBTTTEEEEECCHHHHHTTSSS-SEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTT
T ss_pred CceEEEecCCCCCceECcccceeEEEEeccC-cceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCC
Confidence 77665522111100 00 1234444566666665542210
Q ss_pred -CcccceEEEEecCCCce-eeccccCCCCCCCCcceeeee--cCEEEEEeccCCCCccCeEEEEECCCCcEEEee
Q 006334 152 -ANYLNDLHVLDLKTMRW-ASPAVKGDIPVPRDSHSSNVI--ANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLA 222 (650)
Q Consensus 152 -~~~~~dv~~yd~~t~~W-t~i~~~~~lP~~R~~hs~v~~--~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~ 222 (650)
......++++|+.+.+- ..+.....+.........+.+ +++++++..... .....++.+|+.+.+...+.
T Consensus 223 ~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~-~~~~~i~~~d~~~g~~~~~~ 296 (723)
T 1xfd_A 223 SENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRA-QNVSILTLCDATTGVCTKKH 296 (723)
T ss_dssp SCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETT-SCEEEEEEEETTTCCEEEEE
T ss_pred CCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCC-CCeEEEEEEeCCCCcceEEE
Confidence 01123788888877652 333210000000111111222 566655543222 23357899999988766653
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=88.60 E-value=35 Score=38.14 Aligned_cols=191 Identities=9% Similarity=0.074 Sum_probs=92.4
Q ss_pred CEEEEEccCCCCcccceEEEEECCCCc--EEE--eecCCCCCCCCcceEEEE-ECCEEEEEcccCCCcCcCeEEEEECCC
Q 006334 38 GAVYIFGGCCGGLHFGDVLMLNLDTMV--WST--LATTGQGPGPRDSHSAIL-WGHKMIVFGGTNGYKKVNDLHILDLES 112 (650)
Q Consensus 38 ~~IyvfGG~~~~~~~~dv~~yD~~t~s--W~~--l~~~g~~P~pR~~hsa~~-~~~~lyVfGG~~~~~~~ndv~~yD~~t 112 (650)
..+++.|+.++ .+.++|+.+.. +.. ....+. ...-.++++ .++++++.|+.++ .+.++|+.+
T Consensus 395 ~~~l~s~s~D~-----~i~~W~~~~~~~~~~~~~~~~~~h---~~~v~~v~~s~~g~~l~sgs~Dg-----~v~vwd~~~ 461 (694)
T 3dm0_A 395 ADIIVSASRDK-----SIILWKLTKDDKAYGVAQRRLTGH---SHFVEDVVLSSDGQFALSGSWDG-----ELRLWDLAA 461 (694)
T ss_dssp CSEEEEEETTS-----EEEEEECCCSTTCSCEEEEEEECC---SSCEEEEEECTTSSEEEEEETTS-----EEEEEETTT
T ss_pred CCEEEEEeCCC-----cEEEEEccCCCcccccccceecCC---CCcEEEEEECCCCCEEEEEeCCC-----cEEEEECCC
Confidence 46777777543 57777775432 111 001111 111122222 2677777787643 688889887
Q ss_pred CcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee-c-
Q 006334 113 KEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI-A- 190 (650)
Q Consensus 113 ~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~-~- 190 (650)
..-...- .+ ....-.++....++..++.|+.+ ..+.+||.....-..+.. .....+....++.+ .
T Consensus 462 ~~~~~~~-~~---h~~~v~~~~~s~~~~~l~s~s~D-------~~i~iwd~~~~~~~~~~~--~~~~h~~~v~~~~~~~~ 528 (694)
T 3dm0_A 462 GVSTRRF-VG---HTKDVLSVAFSLDNRQIVSASRD-------RTIKLWNTLGECKYTISE--GGEGHRDWVSCVRFSPN 528 (694)
T ss_dssp TEEEEEE-EC---CSSCEEEEEECTTSSCEEEEETT-------SCEEEECTTSCEEEEECS--STTSCSSCEEEEEECSC
T ss_pred CcceeEE-eC---CCCCEEEEEEeCCCCEEEEEeCC-------CEEEEEECCCCcceeecc--CCCCCCCcEEEEEEeCC
Confidence 6543310 11 11112233334466777777763 246777765432221110 11111111222222 1
Q ss_pred --CEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEE-ECCEEEEEeccCCCcccCeEEEEECCCCc
Q 006334 191 --NRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAIN-IGTKVYIIGGVGDKHYYNDIWILNVSTCS 267 (650)
Q Consensus 191 --~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~-~~~~IyI~GG~~~~~~~~dv~~yD~~t~~ 267 (650)
..+++.|+.+ ..+.+||+.+.+-...- .... ..-.+++. .++++++.|+.++ .+.+||+.+.+
T Consensus 529 ~~~~~l~s~s~d-----~~v~vwd~~~~~~~~~~---~~h~-~~v~~v~~spdg~~l~sg~~Dg-----~i~iwd~~~~~ 594 (694)
T 3dm0_A 529 TLQPTIVSASWD-----KTVKVWNLSNCKLRSTL---AGHT-GYVSTVAVSPDGSLCASGGKDG-----VVLLWDLAEGK 594 (694)
T ss_dssp SSSCEEEEEETT-----SCEEEEETTTCCEEEEE---CCCS-SCEEEEEECTTSSEEEEEETTS-----BCEEEETTTTE
T ss_pred CCcceEEEEeCC-----CeEEEEECCCCcEEEEE---cCCC-CCEEEEEEeCCCCEEEEEeCCC-----eEEEEECCCCc
Confidence 2356666654 46888998876544322 0011 11122222 2457777777543 57888988775
Q ss_pred E
Q 006334 268 W 268 (650)
Q Consensus 268 W 268 (650)
-
T Consensus 595 ~ 595 (694)
T 3dm0_A 595 K 595 (694)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.28 E-value=6.4 Score=40.29 Aligned_cols=152 Identities=10% Similarity=0.061 Sum_probs=74.9
Q ss_pred CEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCC-CCC-CCcccEEEEEcCC-EEEEEccccCCCCcccceEEEEecC
Q 006334 88 HKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGA-PPS-PRESHTATLVGDD-KMVIFGGSGEGEANYLNDLHVLDLK 164 (650)
Q Consensus 88 ~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~-~P~-~R~~hs~~~~~~~-~Lyv~GG~~~~~~~~~~dv~~yd~~ 164 (650)
+.+++.|+.++ .+.+||+.+.+....-.... ... ...-.++....++ .+++.|+.+.. ...+.+||+.
T Consensus 178 ~~~l~~~~~dg-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~----~~~i~~~d~~ 248 (416)
T 2pm9_A 178 AHVFASAGSSN-----FASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN----DPSILIWDLR 248 (416)
T ss_dssp TTEEEEESSSS-----CEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS----SCCCCEEETT
T ss_pred CcEEEEEcCCC-----CEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCC----CceEEEEeCC
Confidence 56777776543 58899998876543211100 000 1222333333333 56777765310 1257788887
Q ss_pred CCceeeccccCCCC--CCCCcceeeee--cCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEE-E
Q 006334 165 TMRWASPAVKGDIP--VPRDSHSSNVI--ANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAIN-I 239 (650)
Q Consensus 165 t~~Wt~i~~~~~lP--~~R~~hs~v~~--~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~-~ 239 (650)
+..-.. . .+. ....-.++... ++.+++.|+.+ ..+.+||+.+.+-...-. .. .... .+++. .
T Consensus 249 ~~~~~~-~---~~~~~~~~~v~~~~~s~~~~~~l~s~~~d-----g~v~~wd~~~~~~~~~~~--~~-~~~v-~~~~~s~ 315 (416)
T 2pm9_A 249 NANTPL-Q---TLNQGHQKGILSLDWCHQDEHLLLSSGRD-----NTVLLWNPESAEQLSQFP--AR-GNWC-FKTKFAP 315 (416)
T ss_dssp STTSCS-B---CCCSCCSSCEEEEEECSSCSSCEEEEESS-----SEEEEECSSSCCEEEEEE--CS-SSCC-CCEEECT
T ss_pred CCCCCc-E---EeecCccCceeEEEeCCCCCCeEEEEeCC-----CCEEEeeCCCCccceeec--CC-CCce-EEEEECC
Confidence 643211 1 111 11111222222 56677777755 468899988765332211 11 1111 12222 2
Q ss_pred CC-EEEEEeccCCCcccCeEEEEECCCC
Q 006334 240 GT-KVYIIGGVGDKHYYNDIWILNVSTC 266 (650)
Q Consensus 240 ~~-~IyI~GG~~~~~~~~dv~~yD~~t~ 266 (650)
++ .+++.|+.+ ..+.+||+.+.
T Consensus 316 ~~~~~l~s~~~d-----~~i~iw~~~~~ 338 (416)
T 2pm9_A 316 EAPDLFACASFD-----NKIEVQTLQNL 338 (416)
T ss_dssp TCTTEEEECCSS-----SEEEEEESCCC
T ss_pred CCCCEEEEEecC-----CcEEEEEccCC
Confidence 34 677777653 35788888764
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.01 E-value=16 Score=36.63 Aligned_cols=191 Identities=11% Similarity=0.031 Sum_probs=93.2
Q ss_pred ECCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcc--eEEEEECCEEEEEcccCCCcCcCeEEEEECCCC
Q 006334 36 SHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDS--HSAILWGHKMIVFGGTNGYKKVNDLHILDLESK 113 (650)
Q Consensus 36 ~~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~--hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~ 113 (650)
.++.+++.||.++ .+.+||..+++-...-..+..-.-.+. ...+..++.+.++-. ...+..||..+.
T Consensus 46 ~d~~~l~sg~~Dg-----~v~iwd~~~~~~~~~~~~~~v~~~~~~~~~~s~s~D~~i~~w~~------~~~~~~~~~~~~ 114 (343)
T 3lrv_A 46 YDKWVCMCRCEDG-----ALHFTQLKDSKTITTITTPNPRTGGEHPAIISRGPCNRLLLLYP------GNQITILDSKTN 114 (343)
T ss_dssp EEEEEEEEEEETT-----EEEEEEESSSSCEEEEEEECCCTTCCCCSEEEECSTTEEEEEET------TTEEEEEETTTC
T ss_pred CCCCEEEEECCCC-----cEEEEECCCCcEEEEEecCCceeeeeCCceEEecCCCeEEEEEc------cCceEEeecCCc
Confidence 3567777787543 577888776543221111000000000 111122444544432 246777888777
Q ss_pred c-EEeeecCCCCCCCCcccEEEEEc--CCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee-
Q 006334 114 E-WMRPECRGAPPSPRESHTATLVG--DDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI- 189 (650)
Q Consensus 114 ~-W~~l~~~~~~P~~R~~hs~~~~~--~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~- 189 (650)
. ....... ....-..+.... ++.+++.|+.+ ..+.+||+.+.+-..+. .......-.++...
T Consensus 115 ~~~~~~~~~----~~~~v~~~~~~~~~~~~~l~s~s~d-------g~i~~wd~~~~~~~~~~---~~~~~~~i~~~~~~p 180 (343)
T 3lrv_A 115 KVLREIEVD----SANEIIYMYGHNEVNTEYFIWADNR-------GTIGFQSYEDDSQYIVH---SAKSDVEYSSGVLHK 180 (343)
T ss_dssp CEEEEEECC----CSSCEEEEECCC---CCEEEEEETT-------CCEEEEESSSSCEEEEE---CCCSSCCCCEEEECT
T ss_pred ceeEEeecC----CCCCEEEEEcCCCCCCCEEEEEeCC-------CcEEEEECCCCcEEEEE---ecCCCCceEEEEECC
Confidence 6 3232111 111122223233 56677778763 25888998877653322 11111112223332
Q ss_pred cCEEEEEeccCCCCccCeEEEEECCCCcEE--EeeecCCCCCcccceEEEEE--CCEEEEEeccCCCcccCeEEEEECCC
Q 006334 190 ANRLFVYGGDCGDQYHGDIDMLDMNSLTWS--RLAIIGSSPGVRAGHAAINI--GTKVYIIGGVGDKHYYNDIWILNVST 265 (650)
Q Consensus 190 ~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~--~i~~~g~~P~~R~~~s~v~~--~~~IyI~GG~~~~~~~~dv~~yD~~t 265 (650)
++.+++.|+.+ ..+..||+.+.+-. .+.. .. ......+.+ ++.+++.|+ ++ .+.+||+.+
T Consensus 181 dg~~lasg~~d-----g~i~iwd~~~~~~~~~~~~~----~h-~~~v~~l~fs~~g~~l~s~~-~~-----~v~iwd~~~ 244 (343)
T 3lrv_A 181 DSLLLALYSPD-----GILDVYNLSSPDQASSRFPV----DE-EAKIKEVKFADNGYWMVVEC-DQ-----TVVCFDLRK 244 (343)
T ss_dssp TSCEEEEECTT-----SCEEEEESSCTTSCCEECCC----CT-TSCEEEEEECTTSSEEEEEE-SS-----BEEEEETTS
T ss_pred CCCEEEEEcCC-----CEEEEEECCCCCCCccEEec----cC-CCCEEEEEEeCCCCEEEEEe-CC-----eEEEEEcCC
Confidence 46777777755 47899998876533 2221 01 112222332 456666665 22 689999987
Q ss_pred Cc
Q 006334 266 CS 267 (650)
Q Consensus 266 ~~ 267 (650)
..
T Consensus 245 ~~ 246 (343)
T 3lrv_A 245 DV 246 (343)
T ss_dssp ST
T ss_pred CC
Confidence 53
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=87.95 E-value=23 Score=39.34 Aligned_cols=243 Identities=14% Similarity=0.122 Sum_probs=116.6
Q ss_pred CEEEEEccCCCCcccceEEEEECC--CCcEEEeecCCCCCCCCcceEEEEE-----CC-EEEEEcccCCCcCcCeEEEEE
Q 006334 38 GAVYIFGGCCGGLHFGDVLMLNLD--TMVWSTLATTGQGPGPRDSHSAILW-----GH-KMIVFGGTNGYKKVNDLHILD 109 (650)
Q Consensus 38 ~~IyvfGG~~~~~~~~dv~~yD~~--t~sW~~l~~~g~~P~pR~~hsa~~~-----~~-~lyVfGG~~~~~~~ndv~~yD 109 (650)
.++|+.+. .+.+.+||+. +.+- +... +....-..+++. ++ .+|+..- ..+.+.++|
T Consensus 209 r~lyv~~~------dg~V~viD~~~~t~~~--v~~i---~~G~~P~~ia~s~~~~pDGk~l~v~n~-----~~~~v~ViD 272 (567)
T 1qks_A 209 RYLFVIGR------DGKVNMIDLWMKEPTT--VAEI---KIGSEARSIETSKMEGWEDKYAIAGAY-----WPPQYVIMD 272 (567)
T ss_dssp CEEEEEET------TSEEEEEETTSSSCCE--EEEE---ECCSEEEEEEECCSTTCTTTEEEEEEE-----ETTEEEEEE
T ss_pred CEEEEEcC------CCeEEEEECCCCCCcE--eEEE---ecCCCCceeEEccccCCCCCEEEEEEc-----cCCeEEEEE
Confidence 46676432 2479999995 4432 2211 111122233443 44 5666432 236788899
Q ss_pred CCCCcEEe-eecCCC-------CCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCC
Q 006334 110 LESKEWMR-PECRGA-------PPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPR 181 (650)
Q Consensus 110 ~~t~~W~~-l~~~~~-------~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R 181 (650)
..+.+-.+ +.+.+. .|.+|... ++...++..+++-=. ..+.++.+|..+.....+. .++..+
T Consensus 273 ~~t~~~~~~i~~~~~~~~~~~~~p~~rva~-i~~s~~~~~~vv~~~------~~g~v~~vd~~~~~~~~v~---~i~~~~ 342 (567)
T 1qks_A 273 GETLEPKKIQSTRGMTYDEQEYHPEPRVAA-ILASHYRPEFIVNVK------ETGKILLVDYTDLNNLKTT---EISAER 342 (567)
T ss_dssp TTTCCEEEEEECCEECTTTCCEESCCCEEE-EEECSSSSEEEEEET------TTTEEEEEETTCSSEEEEE---EEECCS
T ss_pred CCCCcEEEEEeccccccccccccCCCceEE-EEEcCCCCEEEEEec------CCCeEEEEecCCCccceee---eeeccc
Confidence 87765433 221110 12333332 222223333333211 1356888888765544333 233344
Q ss_pred Ccceeeee-cC-EEEEEeccCCCCccCeEEEEECCCCcEEEeeec-CCCCCcccceEEEEEC-CEEEEEeccCCCcccCe
Q 006334 182 DSHSSNVI-AN-RLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAII-GSSPGVRAGHAAINIG-TKVYIIGGVGDKHYYND 257 (650)
Q Consensus 182 ~~hs~v~~-~~-~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~-g~~P~~R~~~s~v~~~-~~IyI~GG~~~~~~~~d 257 (650)
.-|..... ++ .+|+.... .+.+.++|..+.+-...-.. +..|.+..+.....-+ +.+|+.+-.. ...
T Consensus 343 ~~~d~~~~pdgr~~~va~~~-----sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g----~~~ 413 (567)
T 1qks_A 343 FLHDGGLDGSHRYFITAANA-----RNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMG----DDS 413 (567)
T ss_dssp SEEEEEECTTSCEEEEEEGG-----GTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSS----SSE
T ss_pred cccCceECCCCCEEEEEeCC-----CCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCC----CCe
Confidence 55544433 23 44444332 36899999998875443334 4445543333332222 4677664322 246
Q ss_pred EEEEECCCCc-----EEEeecCCCCCCCcceeEEEEE--CCeEEEEcCCCCCCCCCCcEEEEecCCC
Q 006334 258 IWILNVSTCS-----WSQLDTCGQQPQGRFSHAAVVT--GSDIVIYGGCGEDERPLNELLVLQLGAE 317 (650)
Q Consensus 258 v~~yD~~t~~-----W~~l~~~~~~p~~R~~hsav~~--~~~lyV~GG~~~~~~~~~d~~~l~l~~~ 317 (650)
+.++|..+.. |+.+....-.. .....+... +..+||---.+.+....+.+.+||+...
T Consensus 414 Vsvid~~~~~~~~~~~kvv~~i~~~g--~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 414 VALIGTDPEGHPDNAWKILDSFPALG--GGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp EEEEECCTTTCTTTBTSEEEEEECSC--SCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred EEEecCCCCCCccccCEEEEEEecCC--CCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 8888877633 87766421111 111112223 2357775322111112457888888644
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=87.44 E-value=20 Score=35.18 Aligned_cols=200 Identities=10% Similarity=0.137 Sum_probs=89.6
Q ss_pred CEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-C--CEEEEEcccCCCcCcCeEEEEECCCCc
Q 006334 38 GAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW-G--HKMIVFGGTNGYKKVNDLHILDLESKE 114 (650)
Q Consensus 38 ~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~-~--~~lyVfGG~~~~~~~ndv~~yD~~t~~ 114 (650)
+.+++.|+.+ ..+.++|..+..|..+..... ....-.++.+. + +.+++.|+.++ .+..+|+.+..
T Consensus 67 g~~l~s~s~D-----~~v~iWd~~~~~~~~~~~~~~--h~~~v~~v~~~p~~~g~~l~s~s~d~-----~v~~wd~~~~~ 134 (297)
T 2pm7_B 67 GTILASCSYD-----GKVMIWKEENGRWSQIAVHAV--HSASVNSVQWAPHEYGPMLLVASSDG-----KVSVVEFKENG 134 (297)
T ss_dssp CSEEEEEETT-----TEEEEEEBSSSCBCCCEEECC--CSSCEEEEEECCGGGCSEEEEEETTS-----EEEEEEBCSSS
T ss_pred CCEEEEEcCC-----CEEEEEEcCCCceEEEEEeec--CCCceeEEEeCcCCCCcEEEEEECCC-----cEEEEEecCCC
Confidence 4566666654 357788888776654432211 01111222222 2 55677776543 56777776542
Q ss_pred -EEeeecCCCCCCCCcccEEEEEc-------------CCEEEEEccccCCCCcccceEEEEecCCC--ceeeccccCCCC
Q 006334 115 -WMRPECRGAPPSPRESHTATLVG-------------DDKMVIFGGSGEGEANYLNDLHVLDLKTM--RWASPAVKGDIP 178 (650)
Q Consensus 115 -W~~l~~~~~~P~~R~~hs~~~~~-------------~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~--~Wt~i~~~~~lP 178 (650)
+......+. . ..-.++.... ++++++.|+.+ ..+.+||+.+. .|.... .+.
T Consensus 135 ~~~~~~~~~h-~--~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D-------~~v~lwd~~~~~~~~~~~~---~l~ 201 (297)
T 2pm7_B 135 TTSPIIIDAH-A--IGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD-------NLVKIWKYNSDAQTYVLES---TLE 201 (297)
T ss_dssp CBCCEEEECC-S--SCEEEEEECCCC------------CCEEEEEETT-------SCEEEEEEETTTTEEEEEE---EEC
T ss_pred ceeeeeeecc-c--CccceEeecCCcccccccCCCCCCcceEEEEcCC-------CcEEEEEEcCCCceEEEEE---Eec
Confidence 211100000 0 0011111111 13577777763 24666776543 344322 111
Q ss_pred CCCCcceeeee-c----CEEEEEeccCCCCccCeEEEEECCC--CcEEEeeecCCCCCcccceEEEE-ECCEEEEEeccC
Q 006334 179 VPRDSHSSNVI-A----NRLFVYGGDCGDQYHGDIDMLDMNS--LTWSRLAIIGSSPGVRAGHAAIN-IGTKVYIIGGVG 250 (650)
Q Consensus 179 ~~R~~hs~v~~-~----~~Iyv~GG~~~~~~~n~v~~yd~~t--~~W~~i~~~g~~P~~R~~~s~v~-~~~~IyI~GG~~ 250 (650)
.....-..+.+ . +.+++.|+.+ +.+.++|+.+ ..|...... .......-.+++. .++++++.||.+
T Consensus 202 ~H~~~V~~v~~sp~~~~~~~las~s~D-----~~v~iWd~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~g~~las~~~D 275 (297)
T 2pm7_B 202 GHSDWVRDVAWSPTVLLRSYMASVSQD-----RTCIIWTQDNEQGPWKKTLLK-EEKFPDVLWRASWSLSGNVLALSGGD 275 (297)
T ss_dssp CCSSCEEEEEECCCCSSSEEEEEEETT-----SCEEEEEESSTTSCCEEEESS-SSCCSSCEEEEEECSSSCCEEEEETT
T ss_pred CCCCceEEEEECCCCCCceEEEEEECC-----CcEEEEEeCCCCCccceeeee-cccCCCcEEEEEECCCCCEEEEEcCC
Confidence 11111112222 2 3677777765 3577777655 345543211 0011111122222 346777777754
Q ss_pred CCcccCeEEEEECC-CCcEEEeec
Q 006334 251 DKHYYNDIWILNVS-TCSWSQLDT 273 (650)
Q Consensus 251 ~~~~~~dv~~yD~~-t~~W~~l~~ 273 (650)
+ .+.+|+.. .+.|..+..
T Consensus 276 ~-----~v~lw~~~~~g~w~~~~~ 294 (297)
T 2pm7_B 276 N-----KVTLWKENLEGKWEPAGE 294 (297)
T ss_dssp S-----CEEEEEECTTSCEEEC--
T ss_pred C-----cEEEEEECCCCcEEeccc
Confidence 3 35556654 467987753
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.89 E-value=4.8 Score=46.21 Aligned_cols=108 Identities=11% Similarity=0.132 Sum_probs=60.8
Q ss_pred CCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcC--CEEEEEccccCCCCcccceEEEEecC
Q 006334 87 GHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGD--DKMVIFGGSGEGEANYLNDLHVLDLK 164 (650)
Q Consensus 87 ~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~--~~Lyv~GG~~~~~~~~~~dv~~yd~~ 164 (650)
++++++.||.++ .+.+||....++..+...... ...-.++....+ +.+++.|+.+ ..+.+||+.
T Consensus 20 dg~~latg~~dg-----~I~vwd~~~~~~~~~~~l~~h--~~~V~~l~~s~~~~~~~l~s~s~D-------g~I~vwd~~ 85 (753)
T 3jro_A 20 YGKRLATCSSDK-----TIKIFEVEGETHKLIDTLTGH--EGPVWRVDWAHPKFGTILASCSYD-------GKVLIWKEE 85 (753)
T ss_dssp SSCCEEEEETTT-----EEEEEEEETTEEEEEEEECCC--SSCEEEEEECCTTSCSEEEEEETT-------SCEEEEEEE
T ss_pred CCCeEEEEECCC-----cEEEEecCCCCCccceeccCC--cCceEEEEecCCCCCCEEEEEeCC-------CeEEEEECC
Confidence 456677776543 577788776666654222111 111122232233 6777888763 358889998
Q ss_pred CCceeeccccCCCCCCCCcceeeee--c--CEEEEEeccCCCCccCeEEEEECCCC
Q 006334 165 TMRWASPAVKGDIPVPRDSHSSNVI--A--NRLFVYGGDCGDQYHGDIDMLDMNSL 216 (650)
Q Consensus 165 t~~Wt~i~~~~~lP~~R~~hs~v~~--~--~~Iyv~GG~~~~~~~n~v~~yd~~t~ 216 (650)
++.|..+... ......-..+.+ + +.+++.|+.+ ..+..||+.+.
T Consensus 86 ~~~~~~~~~~---~~h~~~V~~v~~sp~~~~~~l~sgs~d-----g~I~vwdl~~~ 133 (753)
T 3jro_A 86 NGRWSQIAVH---AVHSASVNSVQWAPHEYGPLLLVASSD-----GKVSVVEFKEN 133 (753)
T ss_dssp TTEEEEEEEE---CCCSSCEEEEEECCGGGCSEEEEEETT-----SEEEEEECCSS
T ss_pred CCcccccccc---cCCCCCeEEEEECCCCCCCEEEEEeCC-----CcEEEEEeecC
Confidence 8887655421 111122222222 3 6678888765 47888888765
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.83 E-value=23 Score=34.11 Aligned_cols=187 Identities=13% Similarity=0.082 Sum_probs=86.3
Q ss_pred ECCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEE-ECCEEEEEcccCCCcCcCeEEEEECCCCc
Q 006334 36 SHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAIL-WGHKMIVFGGTNGYKKVNDLHILDLESKE 114 (650)
Q Consensus 36 ~~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~-~~~~lyVfGG~~~~~~~ndv~~yD~~t~~ 114 (650)
.++..++.|+.+ ..+.+||..+.......... ...-.++++ .++.+++.|+.++ .+..+|+....
T Consensus 27 ~~~~~l~s~~~d-----g~v~vw~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~dg-----~i~~~~~~~~~ 92 (313)
T 3odt_A 27 VDDSKVASVSRD-----GTVRLWSKDDQWLGTVVYTG----QGFLNSVCYDSEKELLLFGGKDT-----MINGVPLFATS 92 (313)
T ss_dssp EETTEEEEEETT-----SEEEEEEESSSEEEEEEEEC----SSCEEEEEEETTTTEEEEEETTS-----CEEEEETTCCT
T ss_pred cCCCEEEEEEcC-----CcEEEEECCCCEEEEEeecC----CccEEEEEECCCCCEEEEecCCC-----eEEEEEeeecC
Confidence 455556666643 36888888776544332221 111223333 3667777777644 45666665431
Q ss_pred -EEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee--cC
Q 006334 115 -WMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI--AN 191 (650)
Q Consensus 115 -W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~--~~ 191 (650)
...+. ........-..+.+ ++.+++.|+.+ ..+.+||.....+.. . .. ...-.++... ++
T Consensus 93 ~~~~~~---~~~~~~~~i~~~~~-~~~~l~~~~~d-------~~i~~~d~~~~~~~~-~---~~--~~~v~~~~~~~~~~ 155 (313)
T 3odt_A 93 GEDPLY---TLIGHQGNVCSLSF-QDGVVISGSWD-------KTAKVWKEGSLVYNL-Q---AH--NASVWDAKVVSFSE 155 (313)
T ss_dssp TSCC-C---EECCCSSCEEEEEE-ETTEEEEEETT-------SEEEEEETTEEEEEE-E---CC--SSCEEEEEEEETTT
T ss_pred CCCccc---chhhcccCEEEEEe-cCCEEEEEeCC-------CCEEEEcCCcEEEec-c---cC--CCceeEEEEccCCC
Confidence 11110 00111111122223 45566677653 347777732222221 1 11 1111122222 46
Q ss_pred EEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCcE
Q 006334 192 RLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCSW 268 (650)
Q Consensus 192 ~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W 268 (650)
.+++.|+.+ ..+..||.... -..+. ..............++. ++.|+.+ ..+.+||+.+.+-
T Consensus 156 ~~l~~~~~d-----~~i~i~d~~~~-~~~~~---~~~~~~i~~~~~~~~~~-~~~~~~d-----g~i~i~d~~~~~~ 217 (313)
T 3odt_A 156 NKFLTASAD-----KTIKLWQNDKV-IKTFS---GIHNDVVRHLAVVDDGH-FISCSND-----GLIKLVDMHTGDV 217 (313)
T ss_dssp TEEEEEETT-----SCEEEEETTEE-EEEEC---SSCSSCEEEEEEEETTE-EEEEETT-----SEEEEEETTTCCE
T ss_pred CEEEEEECC-----CCEEEEecCce-EEEEe---ccCcccEEEEEEcCCCe-EEEccCC-----CeEEEEECCchhh
Confidence 666777654 36788883322 11221 11112222223334567 6666543 3689999987653
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.79 E-value=8.9 Score=38.02 Aligned_cols=190 Identities=14% Similarity=0.151 Sum_probs=93.0
Q ss_pred CEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-C---CEEEEEcccCCCcCcCeEEEEECCCC
Q 006334 38 GAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW-G---HKMIVFGGTNGYKKVNDLHILDLESK 113 (650)
Q Consensus 38 ~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~-~---~~lyVfGG~~~~~~~ndv~~yD~~t~ 113 (650)
..+++.|+... ....+.+||..+.........+. ...-.++.+. + +.+++.|+.++ .+..||..+.
T Consensus 31 ~~l~~~~s~~~--~d~~v~iw~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~ 100 (357)
T 3i2n_A 31 AKFVTMGNFAR--GTGVIQLYEIQHGDLKLLREIEK---AKPIKCGTFGATSLQQRYLATGDFGG-----NLHIWNLEAP 100 (357)
T ss_dssp SEEEEEEC--C--CCEEEEEEEECSSSEEEEEEEEE---SSCEEEEECTTCCTTTCCEEEEETTS-----CEEEECTTSC
T ss_pred ceEEEecCccC--CCcEEEEEeCCCCcccceeeecc---cCcEEEEEEcCCCCCCceEEEecCCC-----eEEEEeCCCC
Confidence 36766776421 12468889988887655433211 1111223332 2 47777777543 5778888766
Q ss_pred c--EEeeecCCCCCCCCcccEEEE------EcCCEEEEEccccCCCCcccceEEEEecCCCc--eeeccccCCCCCCCCc
Q 006334 114 E--WMRPECRGAPPSPRESHTATL------VGDDKMVIFGGSGEGEANYLNDLHVLDLKTMR--WASPAVKGDIPVPRDS 183 (650)
Q Consensus 114 ~--W~~l~~~~~~P~~R~~hs~~~------~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~--Wt~i~~~~~lP~~R~~ 183 (650)
. ...+. ... ..-.++.. ..++.+++.|+.+ ..+.+||+.+.. ...+... .....+..
T Consensus 101 ~~~~~~~~---~~~--~~v~~~~~~~~~~~s~~~~~l~~~~~d-------~~i~vwd~~~~~~~~~~~~~~-~~~~~~~v 167 (357)
T 3i2n_A 101 EMPVYSVK---GHK--EIINAIDGIGGLGIGEGAPEIVTGSRD-------GTVKVWDPRQKDDPVANMEPV-QGENKRDC 167 (357)
T ss_dssp SSCSEEEC---CCS--SCEEEEEEESGGGCC-CCCEEEEEETT-------SCEEEECTTSCSSCSEEECCC-TTSCCCCE
T ss_pred CccEEEEE---ecc--cceEEEeeccccccCCCccEEEEEeCC-------CeEEEEeCCCCCCcceecccc-CCCCCCce
Confidence 4 22221 111 11111111 1246677777763 258888887654 2222200 00001122
Q ss_pred ceee-----eecCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEE----CCEEEEEeccCCCcc
Q 006334 184 HSSN-----VIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINI----GTKVYIIGGVGDKHY 254 (650)
Q Consensus 184 hs~v-----~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~----~~~IyI~GG~~~~~~ 254 (650)
.+++ .-++.+++.|+.+ ..+..||+.+..-...... ...-.++... ++..++.|+.+
T Consensus 168 ~~~~~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~l~~~~~d---- 233 (357)
T 3i2n_A 168 WTVAFGNAYNQEERVVCAGYDN-----GDIKLFDLRNMALRWETNI-----KNGVCSLEFDRKDISMNKLVATSLE---- 233 (357)
T ss_dssp EEEEEECCCC-CCCEEEEEETT-----SEEEEEETTTTEEEEEEEC-----SSCEEEEEESCSSSSCCEEEEEEST----
T ss_pred EEEEEEeccCCCCCEEEEEccC-----CeEEEEECccCceeeecCC-----CCceEEEEcCCCCCCCCEEEEECCC----
Confidence 2222 1356677777654 4789999988765433211 1112233333 45667776543
Q ss_pred cCeEEEEECCC
Q 006334 255 YNDIWILNVST 265 (650)
Q Consensus 255 ~~dv~~yD~~t 265 (650)
..+.+||+.+
T Consensus 234 -g~i~i~d~~~ 243 (357)
T 3i2n_A 234 -GKFHVFDMRT 243 (357)
T ss_dssp -TEEEEEEEEE
T ss_pred -CeEEEEeCcC
Confidence 3577777754
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=86.48 E-value=44 Score=37.04 Aligned_cols=121 Identities=20% Similarity=0.301 Sum_probs=65.7
Q ss_pred EEEEECCEEEEEccCCCCcccceEEEEECCCCc--EEEeecCCCCCCC---CcceEEEEECCEEEEEcccCCCcCcCeEE
Q 006334 32 SACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMV--WSTLATTGQGPGP---RDSHSAILWGHKMIVFGGTNGYKKVNDLH 106 (650)
Q Consensus 32 s~v~~~~~IyvfGG~~~~~~~~dv~~yD~~t~s--W~~l~~~g~~P~p---R~~hsa~~~~~~lyVfGG~~~~~~~ndv~ 106 (650)
+.++.++.||+.... +.++.+|..+.+ |+.-........+ ....+.++.+++||+... ...++
T Consensus 63 ~P~v~~g~vyv~~~~------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~------dg~l~ 130 (582)
T 1flg_A 63 QAIVSDGVIYVTASY------SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL------DASVV 130 (582)
T ss_dssp CCEEETTEEEEEETT------TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET------TTEEE
T ss_pred ccEEECCEEEEEcCC------CCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeC------CCEEE
Confidence 446789999997653 249999987664 8764332110000 112334567899888431 24799
Q ss_pred EEECCCCc--EEeeecCCCCCCCC--cccEEEEEcCC------EEEEEccccCCCCcccceEEEEecCCC--ceee
Q 006334 107 ILDLESKE--WMRPECRGAPPSPR--ESHTATLVGDD------KMVIFGGSGEGEANYLNDLHVLDLKTM--RWAS 170 (650)
Q Consensus 107 ~yD~~t~~--W~~l~~~~~~P~~R--~~hs~~~~~~~------~Lyv~GG~~~~~~~~~~dv~~yd~~t~--~Wt~ 170 (650)
.+|..+.+ |+.-. . . +... ...+-++. ++ .|| +|... .+......++.||..+. .|+.
T Consensus 131 AlD~~TG~~~W~~~~-~-~-~~~~~~~~~sP~v~-~~~~~G~~~v~-vg~~~-~e~~~~g~v~alD~~tG~~~W~~ 200 (582)
T 1flg_A 131 ALNKNTGKVVWKKKF-A-D-HGAGYTMTGAPTIV-KDGKTGKVLLI-HGSSG-DEFGVVGRLFARDPDTGEEIWMR 200 (582)
T ss_dssp EEESSSCCEEEEEEC-S-C-GGGTCBCCSCCEEE-ECTTTCCEEEE-ECCBC-GGGCCBCEEEEECTTTCCEEEEE
T ss_pred EEECCCCCEEeeecC-C-C-CCcCcccccCCEEe-CCCcCCcEEEE-Eeccc-cccCCCCEEEEEECCCCCEEeec
Confidence 99998874 87631 1 1 1001 11122333 34 444 44321 11122457899998865 4864
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=86.46 E-value=26 Score=35.99 Aligned_cols=149 Identities=12% Similarity=0.172 Sum_probs=76.1
Q ss_pred CCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCC
Q 006334 87 GHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTM 166 (650)
Q Consensus 87 ~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~ 166 (650)
+++.++.|+.++ .+.++|+.+.+-...- .+ ....-.++....++..++.|+.+ ..+.+||+.+.
T Consensus 134 dg~~l~s~~~d~-----~i~iwd~~~~~~~~~~-~~---h~~~v~~~~~~p~~~~l~s~s~d-------~~v~iwd~~~~ 197 (393)
T 1erj_A 134 DGKFLATGAEDR-----LIRIWDIENRKIVMIL-QG---HEQDIYSLDYFPSGDKLVSGSGD-------RTVRIWDLRTG 197 (393)
T ss_dssp TSSEEEEEETTS-----CEEEEETTTTEEEEEE-CC---CSSCEEEEEECTTSSEEEEEETT-------SEEEEEETTTT
T ss_pred CCCEEEEEcCCC-----eEEEEECCCCcEEEEE-cc---CCCCEEEEEEcCCCCEEEEecCC-------CcEEEEECCCC
Confidence 577777777643 6788898887654321 11 11122334444456667777753 35888898877
Q ss_pred ceeeccccCCCCCCCCcceeeee--cCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecC-CC-CCcccceEEEEE--C
Q 006334 167 RWASPAVKGDIPVPRDSHSSNVI--ANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIG-SS-PGVRAGHAAINI--G 240 (650)
Q Consensus 167 ~Wt~i~~~~~lP~~R~~hs~v~~--~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g-~~-P~~R~~~s~v~~--~ 240 (650)
+....- .. .....+++.. ++.+++.|+.+ ..+..||+.+..-...-... .. .........+.+ +
T Consensus 198 ~~~~~~---~~--~~~v~~~~~~~~~~~~l~~~s~d-----~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~ 267 (393)
T 1erj_A 198 QCSLTL---SI--EDGVTTVAVSPGDGKYIAAGSLD-----RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD 267 (393)
T ss_dssp EEEEEE---EC--SSCEEEEEECSTTCCEEEEEETT-----SCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTT
T ss_pred eeEEEE---Ec--CCCcEEEEEECCCCCEEEEEcCC-----CcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCC
Confidence 654321 11 1111122222 46777887765 36888998876543321100 00 001111222222 4
Q ss_pred CEEEEEeccCCCcccCeEEEEECCCC
Q 006334 241 TKVYIIGGVGDKHYYNDIWILNVSTC 266 (650)
Q Consensus 241 ~~IyI~GG~~~~~~~~dv~~yD~~t~ 266 (650)
+++++.|+.+ ..+.+||+.+.
T Consensus 268 g~~l~s~s~d-----~~v~~wd~~~~ 288 (393)
T 1erj_A 268 GQSVVSGSLD-----RSVKLWNLQNA 288 (393)
T ss_dssp SSEEEEEETT-----SEEEEEEC---
T ss_pred CCEEEEEeCC-----CEEEEEECCCC
Confidence 5677777654 35778887653
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=86.44 E-value=15 Score=36.63 Aligned_cols=111 Identities=10% Similarity=0.115 Sum_probs=56.4
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCcEEEeecC-CCCCCCCcceEEEEE---CCEEEEEcccCCCcCcCeEEEEECCC
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATT-GQGPGPRDSHSAILW---GHKMIVFGGTNGYKKVNDLHILDLES 112 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~-g~~P~pR~~hsa~~~---~~~lyVfGG~~~~~~~ndv~~yD~~t 112 (650)
++.+++.|+.+ ..+.+||+.++....+... +. ...-.++++. ++.+++.|+.++ .+.++|+.+
T Consensus 24 ~g~~lasgs~D-----~~v~lwd~~~~~~~~~~~l~gH---~~~V~~v~~~~~~~~~~l~s~s~D~-----~v~iWd~~~ 90 (316)
T 3bg1_A 24 YGTRLATCSSD-----RSVKIFDVRNGGQILIADLRGH---EGPVWQVAWAHPMYGNILASCSYDR-----KVIIWREEN 90 (316)
T ss_dssp GGCEEEEEETT-----TEEEEEEEETTEEEEEEEEECC---SSCEEEEEECCGGGSSCEEEEETTS-----CEEEECCSS
T ss_pred CCCEEEEEeCC-----CeEEEEEecCCCcEEEEEEcCC---CccEEEEEeCCCCCCCEEEEEECCC-----EEEEEECCC
Confidence 35666777754 3577788776654332221 11 1111223332 256777777643 477888887
Q ss_pred CcEEeeecCCCCCCCCcccEEEEEcC--CEEEEEccccCCCCcccceEEEEecCCC-cee
Q 006334 113 KEWMRPECRGAPPSPRESHTATLVGD--DKMVIFGGSGEGEANYLNDLHVLDLKTM-RWA 169 (650)
Q Consensus 113 ~~W~~l~~~~~~P~~R~~hs~~~~~~--~~Lyv~GG~~~~~~~~~~dv~~yd~~t~-~Wt 169 (650)
..|..+...... ...-.++....+ +.+++.|+.+ ..+.+||..+. .|.
T Consensus 91 ~~~~~~~~~~~h--~~~V~~v~~~p~~~g~~lasgs~D-------~~i~lwd~~~~~~~~ 141 (316)
T 3bg1_A 91 GTWEKSHEHAGH--DSSVNSVCWAPHDYGLILACGSSD-------GAISLLTYTGEGQWE 141 (316)
T ss_dssp SCCCEEEEECCC--SSCCCEEEECCTTTCSCEEEECSS-------SCEEEEEECSSSCEE
T ss_pred CcceEEEEccCC--CCceEEEEECCCCCCcEEEEEcCC-------CCEEEEecCCCCCcc
Confidence 776543211111 111223333333 5677777763 24677777654 464
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=86.33 E-value=20 Score=40.52 Aligned_cols=197 Identities=11% Similarity=0.051 Sum_probs=98.5
Q ss_pred ccceEEEEECCCCcE--EEeecCCCCC-CCCcceEEEE-ECCEEEEEcccCCCcCcCeEEEEECCCC--cEEeeecCCCC
Q 006334 51 HFGDVLMLNLDTMVW--STLATTGQGP-GPRDSHSAIL-WGHKMIVFGGTNGYKKVNDLHILDLESK--EWMRPECRGAP 124 (650)
Q Consensus 51 ~~~dv~~yD~~t~sW--~~l~~~g~~P-~pR~~hsa~~-~~~~lyVfGG~~~~~~~ndv~~yD~~t~--~W~~l~~~~~~ 124 (650)
....+|++++.+..= ..+-.. .. .+....++.. -+++.+++.-..+ ...+++|.+|+.+. .|+.+...
T Consensus 206 ~~~~v~~~~lgt~~~~~~~v~~~--~~~~~~~~~~~~~SpDg~~l~~~~~~~-~~~~~i~~~d~~~~~~~~~~l~~~--- 279 (693)
T 3iuj_A 206 DQHKVYFHRLGTAQEDDRLVFGA--IPAQHHRYVGATVTEDDRFLLISAANS-TSGNRLYVKDLSQENAPLLTVQGD--- 279 (693)
T ss_dssp CCCEEEEEETTSCGGGCEEEESC--SGGGCCSEEEEEECTTSCEEEEEEESS-SSCCEEEEEETTSTTCCCEEEECS---
T ss_pred CCcEEEEEECCCCcccceEEEec--CCCCCeEEEEEEEcCCCCEEEEEEccC-CCCcEEEEEECCCCCCceEEEeCC---
Confidence 345688887766532 111111 01 1222223322 3555444432221 22379999998776 67776211
Q ss_pred CCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCC---ceeeccccCCCCCCCCcceeeeecCEEEEEeccCC
Q 006334 125 PSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTM---RWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCG 201 (650)
Q Consensus 125 P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~---~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~ 201 (650)
.... ...+...++.||+....+. ....++.+|+.+. .|+.+.. .-. . .. .....++.|++..-.++
T Consensus 280 ~~~~--~~~~~~~g~~l~~~t~~~~----~~~~l~~~d~~~~~~~~~~~l~~--~~~-~-~~-~~s~~g~~lv~~~~~~g 348 (693)
T 3iuj_A 280 LDAD--VSLVDNKGSTLYLLTNRDA----PNRRLVTVDAANPGPAHWRDLIP--ERQ-Q-VL-TVHSGSGYLFAEYMVDA 348 (693)
T ss_dssp SSSC--EEEEEEETTEEEEEECTTC----TTCEEEEEETTSCCGGGCEEEEC--CCS-S-CE-EEEEETTEEEEEEEETT
T ss_pred CCce--EEEEeccCCEEEEEECCCC----CCCEEEEEeCCCCCccccEEEec--CCC-C-EE-EEEEECCEEEEEEEECC
Confidence 1111 1122233588888866421 2357889998763 4776441 111 1 11 33344566655433222
Q ss_pred CCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEE-EC-CEEEEEeccCCCcccCeEEEEECCCCcEEEeec
Q 006334 202 DQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAIN-IG-TKVYIIGGVGDKHYYNDIWILNVSTCSWSQLDT 273 (650)
Q Consensus 202 ~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~-~~-~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~~ 273 (650)
...++++|+.......+. .|.......... .+ +.|++.. ........+|.||+.+++++.+..
T Consensus 349 ---~~~l~~~d~~g~~~~~l~----~p~~~~~~~~~~~~d~~~l~~~~--ss~~tP~~l~~~d~~~g~~~~l~~ 413 (693)
T 3iuj_A 349 ---TARVEQFDYEGKRVREVA----LPGLGSVSGFNGKHDDPALYFGF--ENYAQPPTLYRFEPKSGAISLYRA 413 (693)
T ss_dssp ---EEEEEEECTTSCEEEEEC----CSSSSEEEECCCCTTCSCEEEEE--ECSSSCCEEEEECTTTCCEEEEEC
T ss_pred ---eeEEEEEECCCCeeEEee----cCCCceEEeeecCCCCCEEEEEe--cCCCCCCEEEEEECCCCeEEEEEe
Confidence 357899998876655554 222111111111 12 2344332 112234679999999999888765
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.25 E-value=6 Score=40.60 Aligned_cols=154 Identities=11% Similarity=0.121 Sum_probs=74.5
Q ss_pred EEECCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEec
Q 006334 84 ILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDL 163 (650)
Q Consensus 84 ~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~ 163 (650)
++..+..++.|+.++ .+.++|+.+++-.........-....-.++....++++++.|+.+ ..+.++|+
T Consensus 89 ~~s~d~~l~~~s~dg-----~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d-------~~i~iwd~ 156 (344)
T 4gqb_B 89 TWVGERGILVASDSG-----AVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKD-------ICIKVWDL 156 (344)
T ss_dssp EEETTTEEEEEETTS-----EEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETT-------SCEEEEET
T ss_pred EEeCCCeEEEEECCC-----EEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCC-------CeEEEEEC
Confidence 344444455665533 577888877642211000000001112233444567888888764 24788898
Q ss_pred CCCceeeccccCCCCCCCCcceeeee---cCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEE-E
Q 006334 164 KTMRWASPAVKGDIPVPRDSHSSNVI---ANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAIN-I 239 (650)
Q Consensus 164 ~t~~Wt~i~~~~~lP~~R~~hs~v~~---~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~-~ 239 (650)
.+++-... +......-..+.+ +..+++.|+.+ +.+.+||+.+.+-...- ..........++. .
T Consensus 157 ~~~~~~~~-----~~~h~~~V~~~~~~~~~~~~l~s~s~D-----~~v~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~ 223 (344)
T 4gqb_B 157 AQQVVLSS-----YRAHAAQVTCVAASPHKDSVFLSCSED-----NRILLWDTRCPKPASQI---GCSAPGYLPTSLAWH 223 (344)
T ss_dssp TTTEEEEE-----ECCCSSCEEEEEECSSCTTEEEEEETT-----SCEEEEETTSSSCEEEC---C----CCCEEEEEEC
T ss_pred CCCcEEEE-----EcCcCCceEEEEecCCCCCceeeeccc-----cccccccccccceeeee---ecceeeccceeeeec
Confidence 87654321 1111111112222 23577777765 36888998876533221 0111111122222 2
Q ss_pred --CCEEEEEeccCCCcccCeEEEEECCCCc
Q 006334 240 --GTKVYIIGGVGDKHYYNDIWILNVSTCS 267 (650)
Q Consensus 240 --~~~IyI~GG~~~~~~~~dv~~yD~~t~~ 267 (650)
++++++.|+.+ ..+.+||+.+.+
T Consensus 224 p~~~~~l~sg~~d-----g~v~~wd~~~~~ 248 (344)
T 4gqb_B 224 PQQSEVFVFGDEN-----GTVSLVDTKSTS 248 (344)
T ss_dssp SSCTTEEEEEETT-----SEEEEEESCC--
T ss_pred CCCCcceEEeccC-----CcEEEEECCCCc
Confidence 34677887654 358889987653
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.18 E-value=29 Score=34.64 Aligned_cols=162 Identities=9% Similarity=0.113 Sum_probs=76.2
Q ss_pred EEECCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCcCcCeEEEEECCC
Q 006334 34 CYSHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW-GHKMIVFGGTNGYKKVNDLHILDLES 112 (650)
Q Consensus 34 v~~~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~-~~~lyVfGG~~~~~~~ndv~~yD~~t 112 (650)
....+ +++.|+.+ ..+.+||..++.+..+...........-.++.+. ++.+++.|+.++ .+.++|...
T Consensus 21 ~~s~~-~las~~~D-----~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~-----~v~iw~~~~ 89 (330)
T 2hes_X 21 DFSQG-ILATGSTD-----RKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDS-----TVSIWAKEE 89 (330)
T ss_dssp EEETT-EEEEEESS-----SCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTS-----CEEEEEC--
T ss_pred ccCCC-EEEEEcCC-----CEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCC-----cEEEEEccc
Confidence 34455 66666644 3578888877655443322000011111223332 567777787654 456666643
Q ss_pred C-----cEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCC--CceeeccccCCCCCCCCcce
Q 006334 113 K-----EWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKT--MRWASPAVKGDIPVPRDSHS 185 (650)
Q Consensus 113 ~-----~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t--~~Wt~i~~~~~lP~~R~~hs 185 (650)
. .+..+..... ....-.++....++++++.|+.+ ..+.+||+.. ..+..+.. +......-.
T Consensus 90 ~~~~~~~~~~~~~~~~--h~~~V~~v~~sp~g~~las~s~D-------~~v~iwd~~~~~~~~~~~~~---~~~h~~~v~ 157 (330)
T 2hes_X 90 SADRTFEMDLLAIIEG--HENEVKGVAWSNDGYYLATCSRD-------KSVWIWETDESGEEYECISV---LQEHSQDVK 157 (330)
T ss_dssp -----CCCEEEEEEC------CEEEEEECTTSCEEEEEETT-------SCEEEEECCTTCCCCEEEEE---ECCCSSCEE
T ss_pred CcCccccceeEEEEcC--CCCcEEEEEECCCCCEEEEEeCC-------CEEEEEeccCCCCCeEEEEE---eccCCCceE
Confidence 2 2222211000 01111223333467777777763 2477888743 23433221 111111112
Q ss_pred eeee--cCEEEEEeccCCCCccCeEEEEECCCCcEEEeee
Q 006334 186 SNVI--ANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAI 223 (650)
Q Consensus 186 ~v~~--~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~ 223 (650)
.+.+ ++.+++.|+.+ ..+..+|..+..|..+..
T Consensus 158 ~v~~~p~~~~l~s~s~D-----~~i~iW~~~~~~~~~~~~ 192 (330)
T 2hes_X 158 HVIWHPSEALLASSSYD-----DTVRIWKDYDDDWECVAV 192 (330)
T ss_dssp EEEECSSSSEEEEEETT-----SCEEEEEEETTEEEEEEE
T ss_pred EEEECCCCCEEEEEcCC-----CeEEEEECCCCCeeEEEE
Confidence 2222 45677777765 367778877777776653
|
| >3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.14 E-value=7.4 Score=37.07 Aligned_cols=152 Identities=15% Similarity=0.159 Sum_probs=80.5
Q ss_pred EEEEECCEEEEEccCCCCcccceEEEEECCCC--cE-EEeecC-CCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEE
Q 006334 32 SACYSHGAVYIFGGCCGGLHFGDVLMLNLDTM--VW-STLATT-GQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHI 107 (650)
Q Consensus 32 s~v~~~~~IyvfGG~~~~~~~~dv~~yD~~t~--sW-~~l~~~-g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~ 107 (650)
+++.+++.+|+|-| +.+|+++.... -+ ..+... ...|. ...++....++++|+|-| +.+|+
T Consensus 10 A~~~~~g~~~fFkg-------~~~w~~~~~~~~~gyP~~I~~~w~glP~-~iDAa~~~~~g~~yfFkg-------~~yw~ 74 (196)
T 3c7x_A 10 TVAMLRGEMFVFKE-------RWFWRVRNNQVMDGYPMPIGQFWRGLPA-SINTAYERKDGKFVFFKG-------DKHWV 74 (196)
T ss_dssp EEEEETTEEEEEET-------TEEEEEETTEECTTCSEEHHHHSTTCCS-SCCEEEECTTSCEEEEET-------TEEEE
T ss_pred EEEEcCCEEEEEEC-------CEEEEEECCccCCCCceEhhHhccCCCC-CccEEEEeCCCcEEEecC-------CEEEE
Confidence 34467899999998 46888864310 00 111111 12233 222222224688999987 67899
Q ss_pred EECCCCc---EEeeecCC-CCCCCCcccEEEEE-cCCEEEEEccccCCCCcccceEEEEecCCCceee-----ccccCCC
Q 006334 108 LDLESKE---WMRPECRG-APPSPRESHTATLV-GDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWAS-----PAVKGDI 177 (650)
Q Consensus 108 yD~~t~~---W~~l~~~~-~~P~~R~~hs~~~~-~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~-----i~~~~~l 177 (650)
|+..+.. =+.+.... .+|... --++... .++++|+|-|. ..|+||..+++-.. +..-..+
T Consensus 75 ~~~~~~~~gyPk~I~~~~~glP~~~-IDAA~~~~~~g~~yfFkG~---------~yw~yd~~~~~v~~gyPk~i~~~~gi 144 (196)
T 3c7x_A 75 FDEASLEPGYPKHIKELGRGLPTDK-IDAALFWMPNGKTYFFRGN---------KYYRFNEELRAVDSEYPKNIKVWEGI 144 (196)
T ss_dssp EETTEECTTCSEEGGGTCBSCCSSC-CSEEEEETTTTEEEEEETT---------EEEEEETTTTEECTTCSEEGGGSBTC
T ss_pred EeCCcccCCCCeEhhhcCCCCCCCc-ccEEEEEccCCEEEEEECC---------EEEEEeCCcccccCCCCccHHHCCCc
Confidence 9864311 11221111 123222 2333333 36899999774 48899986653321 1100122
Q ss_pred CCCCCcceeeee-cC-EEEEEeccCCCCccCeEEEEECCCCc
Q 006334 178 PVPRDSHSSNVI-AN-RLFVYGGDCGDQYHGDIDMLDMNSLT 217 (650)
Q Consensus 178 P~~R~~hs~v~~-~~-~Iyv~GG~~~~~~~n~v~~yd~~t~~ 217 (650)
| ..-.++... ++ ++|+|-| +..|+||..+.+
T Consensus 145 p--~~idaAf~~~~~~~~YfFkg-------~~y~r~d~~~~~ 177 (196)
T 3c7x_A 145 P--ESPRGSFMGSDEVFTYFYKG-------NKYWKFNNQKLK 177 (196)
T ss_dssp C--SSCSEEEECTTSSEEEEEET-------TEEEEEETTTTE
T ss_pred C--CCcceeEEecCCCEEEEEEC-------CEEEEEECCcce
Confidence 2 222333333 44 8999988 688999987764
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=86.07 E-value=13 Score=40.49 Aligned_cols=110 Identities=10% Similarity=-0.001 Sum_probs=60.5
Q ss_pred CCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCC
Q 006334 87 GHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTM 166 (650)
Q Consensus 87 ~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~ 166 (650)
++.+++..+.. +.+.+||+.+.+.+.+... +. .......+++.+++++.+..+ ...++++|+.+.
T Consensus 121 g~~~~~~s~~~-----~~~~l~d~~~g~~~~l~~~---~~----~~~~~spDG~~la~~~~~~~~---~~~i~~~d~~~g 185 (582)
T 3o4h_A 121 GEAVVFTGATE-----DRVALYALDGGGLRELARL---PG----FGFVSDIRGDLIAGLGFFGGG---RVSLFTSNLSSG 185 (582)
T ss_dssp SSCEEEEEECS-----SCEEEEEEETTEEEEEEEE---SS----CEEEEEEETTEEEEEEEEETT---EEEEEEEETTTC
T ss_pred CCeEEEEecCC-----CCceEEEccCCcEEEeecC---CC----ceEEECCCCCEEEEEEEcCCC---CeEEEEEcCCCC
Confidence 34555554432 2334678888877665221 11 344444567777766653211 245999999988
Q ss_pred ceeeccccCCCCCCCCcceeeee-cCEEEEEeccCCCCccCeEEEEECCCCcEE
Q 006334 167 RWASPAVKGDIPVPRDSHSSNVI-ANRLFVYGGDCGDQYHGDIDMLDMNSLTWS 219 (650)
Q Consensus 167 ~Wt~i~~~~~lP~~R~~hs~v~~-~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~ 219 (650)
.+..+. ... ......+.. +++.++.+..++ ...++++|+++.+..
T Consensus 186 ~~~~l~---~~~--~~~~~~~~SpDG~~l~~~~~~~---~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 186 GLRVFD---SGE--GSFSSASISPGMKVTAGLETAR---EARLVTVDPRDGSVE 231 (582)
T ss_dssp CCEEEC---CSS--CEEEEEEECTTSCEEEEEECSS---CEEEEEECTTTCCEE
T ss_pred CceEee---cCC--CccccceECCCCCEEEEccCCC---eeEEEEEcCCCCcEE
Confidence 887654 111 111222222 455444433222 247999999998887
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=85.85 E-value=17 Score=35.92 Aligned_cols=151 Identities=12% Similarity=-0.001 Sum_probs=78.3
Q ss_pred CCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCC
Q 006334 87 GHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTM 166 (650)
Q Consensus 87 ~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~ 166 (650)
++.||+..-. .+.+++||+.+.....+... ..-.+++...+++||+..+ +.+++||+++.
T Consensus 24 ~~~l~~~d~~-----~~~i~~~d~~~~~~~~~~~~------~~~~~i~~~~dG~l~v~~~---------~~l~~~d~~~g 83 (297)
T 3g4e_A 24 SNSLLFVDIP-----AKKVCRWDSFTKQVQRVTMD------APVSSVALRQSGGYVATIG---------TKFCALNWKEQ 83 (297)
T ss_dssp TTEEEEEETT-----TTEEEEEETTTCCEEEEECS------SCEEEEEEBTTSSEEEEET---------TEEEEEETTTT
T ss_pred CCEEEEEECC-----CCEEEEEECCCCcEEEEeCC------CceEEEEECCCCCEEEEEC---------CeEEEEECCCC
Confidence 4678876533 35799999998876544211 1123344445677666421 35899999998
Q ss_pred ceeeccccCC-CCCCCCcceeeeecCEEEEEeccCC------CCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEE
Q 006334 167 RWASPAVKGD-IPVPRDSHSSNVIANRLFVYGGDCG------DQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINI 239 (650)
Q Consensus 167 ~Wt~i~~~~~-lP~~R~~hs~v~~~~~Iyv~GG~~~------~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~ 239 (650)
+++.+..... .+..+....++.-++++|+..-... ......++++|+.. +...+... . .....++..
T Consensus 84 ~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~~~~--~---~~pngi~~s 157 (297)
T 3g4e_A 84 SAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH-HVKKYFDQ--V---DISNGLDWS 157 (297)
T ss_dssp EEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS-CEEEEEEE--E---SBEEEEEEC
T ss_pred cEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC-CEEEEeec--c---ccccceEEc
Confidence 8876542211 1111222222222567776431111 12235789998763 34333211 1 111223332
Q ss_pred -C-CEEEEEeccCCCcccCeEEEEEC--CCCcE
Q 006334 240 -G-TKVYIIGGVGDKHYYNDIWILNV--STCSW 268 (650)
Q Consensus 240 -~-~~IyI~GG~~~~~~~~dv~~yD~--~t~~W 268 (650)
+ +.+|+... ....|++||+ .+...
T Consensus 158 pdg~~lyv~~~-----~~~~i~~~~~d~~~G~~ 185 (297)
T 3g4e_A 158 LDHKIFYYIDS-----LSYSVDAFDYDLQTGQI 185 (297)
T ss_dssp TTSCEEEEEEG-----GGTEEEEEEECTTTCCE
T ss_pred CCCCEEEEecC-----CCCcEEEEeccCCCCcc
Confidence 3 36777743 2357899987 45544
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=85.83 E-value=29 Score=38.51 Aligned_cols=201 Identities=14% Similarity=0.175 Sum_probs=105.2
Q ss_pred cceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCE-EEEEcccCCCcCcCeEEEEECCCCcEEeeecC-CCCCCCC
Q 006334 52 FGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW-GHK-MIVFGGTNGYKKVNDLHILDLESKEWMRPECR-GAPPSPR 128 (650)
Q Consensus 52 ~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~-~~~-lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~-~~~P~~R 128 (650)
...+++.|..+.....+... +..++-|...+. +++ +|+... ..+.+.++|..+++-...-.. +..|.+.
T Consensus 319 ~g~v~~vd~~~~~~~~v~~i---~~~~~~~d~~~~pdgr~~~va~~-----~sn~V~ViD~~t~kl~~~i~vgg~~Phpg 390 (567)
T 1qks_A 319 TGKILLVDYTDLNNLKTTEI---SAERFLHDGGLDGSHRYFITAAN-----ARNKLVVIDTKEGKLVAIEDTGGQTPHPG 390 (567)
T ss_dssp TTEEEEEETTCSSEEEEEEE---ECCSSEEEEEECTTSCEEEEEEG-----GGTEEEEEETTTTEEEEEEECSSSSBCCT
T ss_pred CCeEEEEecCCCccceeeee---eccccccCceECCCCCEEEEEeC-----CCCeEEEEECCCCcEEEEEeccCcCCCCc
Confidence 35788888887665554443 345666665554 344 444332 257899999999864432222 3444443
Q ss_pred cccEEEEEcC-CEEEEEccccCCCCcccceEEEEecCCCc-----eeeccccCCCCCCCCcceeeee--cCEEEEEeccC
Q 006334 129 ESHTATLVGD-DKMVIFGGSGEGEANYLNDLHVLDLKTMR-----WASPAVKGDIPVPRDSHSSNVI--ANRLFVYGGDC 200 (650)
Q Consensus 129 ~~hs~~~~~~-~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~-----Wt~i~~~~~lP~~R~~hs~v~~--~~~Iyv~GG~~ 200 (650)
.+.. ....+ +.+|+.+-.. .+.+.++|.++.. |+.+....... .....+... +..+|+---..
T Consensus 391 ~g~~-~~~p~~g~v~~t~~~g------~~~Vsvid~~~~~~~~~~~kvv~~i~~~g--~g~~~i~~~p~~~~l~v~~~~~ 461 (567)
T 1qks_A 391 RGAN-FVHPTFGPVWATSHMG------DDSVALIGTDPEGHPDNAWKILDSFPALG--GGSLFIKTHPNSQYLYVDATLN 461 (567)
T ss_dssp TCEE-EEETTTEEEEEEEBSS------SSEEEEEECCTTTCTTTBTSEEEEEECSC--SCCCCEECCTTCSEEEEECTTC
T ss_pred ccee-eECCCCCcEEEeCCCC------CCeEEEecCCCCCCccccCEEEEEEecCC--CCCEEEEeCCCCCeEEEecCCC
Confidence 2322 23333 5677765332 1357788876633 87655221111 111112222 24688743211
Q ss_pred -CCCccCeEEEEECCCC-------cEEEeeec--CCC--CCcccceEEEEEC-CEEEEEeccCCCcccCeEEEEECCCCc
Q 006334 201 -GDQYHGDIDMLDMNSL-------TWSRLAII--GSS--PGVRAGHAAINIG-TKVYIIGGVGDKHYYNDIWILNVSTCS 267 (650)
Q Consensus 201 -~~~~~n~v~~yd~~t~-------~W~~i~~~--g~~--P~~R~~~s~v~~~-~~IyI~GG~~~~~~~~dv~~yD~~t~~ 267 (650)
+....+++.+||..+. .+..++.. ..+ ...|..|....-+ +++|+.- ++.....+.|.+||.++.+
T Consensus 462 ~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~-~~~~~~~~~i~v~D~~t~~ 540 (567)
T 1qks_A 462 PEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSV-WNGKDQESALVVVDDKTLE 540 (567)
T ss_dssp SSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEE-ECCTTSCCEEEEEETTTTE
T ss_pred CCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEe-ecCCCCCCcEEEEECCCce
Confidence 1123568999998765 24454320 011 1234445444333 4777662 2223345789999998876
Q ss_pred EEE
Q 006334 268 WSQ 270 (650)
Q Consensus 268 W~~ 270 (650)
-..
T Consensus 541 ~~~ 543 (567)
T 1qks_A 541 LKH 543 (567)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=85.82 E-value=5 Score=42.24 Aligned_cols=148 Identities=13% Similarity=0.091 Sum_probs=74.5
Q ss_pred CCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEE-cCCEEEEEccccCCCCcccceEEEEecCC
Q 006334 87 GHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLV-GDDKMVIFGGSGEGEANYLNDLHVLDLKT 165 (650)
Q Consensus 87 ~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~-~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t 165 (650)
++.+++.|+.++ .+.++|+.+.....+.. .......-.++... .++.+++.|+.+ ..+.+||+.+
T Consensus 131 ~~~~lasGs~dg-----~i~lWd~~~~~~~~~~~--~~gH~~~V~~l~f~p~~~~~l~s~s~D-------~~v~iwd~~~ 196 (435)
T 4e54_B 131 HPSTVAVGSKGG-----DIMLWNFGIKDKPTFIK--GIGAGGSITGLKFNPLNTNQFYASSME-------GTTRLQDFKG 196 (435)
T ss_dssp CTTCEEEEETTS-----CEEEECSSCCSCCEEEC--CCSSSCCCCEEEECSSCTTEEEEECSS-------SCEEEEETTS
T ss_pred CCCEEEEEeCCC-----EEEEEECCCCCceeEEE--ccCCCCCEEEEEEeCCCCCEEEEEeCC-------CEEEEeeccC
Confidence 456788887654 47778887665332210 00011112233333 245677777763 2477889887
Q ss_pred CceeeccccCCCCCCCCcceeeee-cCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEE--C-C
Q 006334 166 MRWASPAVKGDIPVPRDSHSSNVI-ANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINI--G-T 241 (650)
Q Consensus 166 ~~Wt~i~~~~~lP~~R~~hs~v~~-~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~--~-~ 241 (650)
+....+...... .....++... ++.+++.|+.+ ..+..||+....-..+. .......++.+ + +
T Consensus 197 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~g~~d-----g~i~~wd~~~~~~~~~~------~h~~~v~~v~~~p~~~ 263 (435)
T 4e54_B 197 NILRVFASSDTI--NIWFCSLDVSASSRMVVTGDNV-----GNVILLNMDGKELWNLR------MHKKKVTHVALNPCCD 263 (435)
T ss_dssp CEEEEEECCSSC--SCCCCCEEEETTTTEEEEECSS-----SBEEEEESSSCBCCCSB------CCSSCEEEEEECTTCS
T ss_pred CceeEEeccCCC--CccEEEEEECCCCCEEEEEeCC-----CcEeeeccCcceeEEEe------cccceEEeeeecCCCc
Confidence 765543311111 1111222222 56777787765 36888888654322211 11112223333 2 3
Q ss_pred EEEEEeccCCCcccCeEEEEECCCC
Q 006334 242 KVYIIGGVGDKHYYNDIWILNVSTC 266 (650)
Q Consensus 242 ~IyI~GG~~~~~~~~dv~~yD~~t~ 266 (650)
.+++.|+.++ .+.+||+.+.
T Consensus 264 ~~~~s~s~d~-----~v~iwd~~~~ 283 (435)
T 4e54_B 264 WFLATASVDQ-----TVKIWDLRQV 283 (435)
T ss_dssp SEEEEEETTS-----BCCEEETTTC
T ss_pred eEEEEecCcc-----eeeEEecccc
Confidence 4666766543 4667887654
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.53 E-value=12 Score=37.00 Aligned_cols=105 Identities=13% Similarity=0.176 Sum_probs=53.4
Q ss_pred CEEEEEccCCCCcccceEEEEECCCCc--EEEeecCCCCCCCCcceEEEE-----ECCEEEEEcccCCCcCcCeEEEEEC
Q 006334 38 GAVYIFGGCCGGLHFGDVLMLNLDTMV--WSTLATTGQGPGPRDSHSAIL-----WGHKMIVFGGTNGYKKVNDLHILDL 110 (650)
Q Consensus 38 ~~IyvfGG~~~~~~~~dv~~yD~~t~s--W~~l~~~g~~P~pR~~hsa~~-----~~~~lyVfGG~~~~~~~ndv~~yD~ 110 (650)
+.+++.|+.+ ..+.+||+.+.. ...+..... ...+.-.+++. .++.+++.|+.+ ..+..||+
T Consensus 129 ~~~l~~~~~d-----~~i~vwd~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~l~~~~~d-----~~i~i~d~ 197 (357)
T 3i2n_A 129 APEIVTGSRD-----GTVKVWDPRQKDDPVANMEPVQG-ENKRDCWTVAFGNAYNQEERVVCAGYDN-----GDIKLFDL 197 (357)
T ss_dssp CCEEEEEETT-----SCEEEECTTSCSSCSEEECCCTT-SCCCCEEEEEEECCCC-CCCEEEEEETT-----SEEEEEET
T ss_pred ccEEEEEeCC-----CeEEEEeCCCCCCcceeccccCC-CCCCceEEEEEEeccCCCCCEEEEEccC-----CeEEEEEC
Confidence 4455555543 357888887654 233322111 11122223321 366777777653 36889999
Q ss_pred CCCcEEeeecCCCCCCCCcccEEEEEc---CCEEEEEccccCCCCcccceEEEEecCC
Q 006334 111 ESKEWMRPECRGAPPSPRESHTATLVG---DDKMVIFGGSGEGEANYLNDLHVLDLKT 165 (650)
Q Consensus 111 ~t~~W~~l~~~~~~P~~R~~hs~~~~~---~~~Lyv~GG~~~~~~~~~~dv~~yd~~t 165 (650)
.+.+-...... ...-.++.... ++.+++.|+.+ ..+.+||+.+
T Consensus 198 ~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~l~~~~~d-------g~i~i~d~~~ 243 (357)
T 3i2n_A 198 RNMALRWETNI-----KNGVCSLEFDRKDISMNKLVATSLE-------GKFHVFDMRT 243 (357)
T ss_dssp TTTEEEEEEEC-----SSCEEEEEESCSSSSCCEEEEEEST-------TEEEEEEEEE
T ss_pred ccCceeeecCC-----CCceEEEEcCCCCCCCCEEEEECCC-------CeEEEEeCcC
Confidence 88764332111 11223333333 56677777653 3577788754
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=85.50 E-value=29 Score=34.02 Aligned_cols=222 Identities=9% Similarity=0.069 Sum_probs=103.3
Q ss_pred CCE-EEEEccCCCCcccceEEEEEC-CCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEECCCCc
Q 006334 37 HGA-VYIFGGCCGGLHFGDVLMLNL-DTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESKE 114 (650)
Q Consensus 37 ~~~-IyvfGG~~~~~~~~dv~~yD~-~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~ 114 (650)
++. +++.|+.+ ..+.+||+ .+.....+... +....-.++.+..+.+++.|+.+ ..+..+|+.+..
T Consensus 67 ~~~~~l~~~~~d-----g~i~~wd~~~~~~~~~~~~~---~~~~~v~~l~~~~~~~l~s~~~d-----~~i~iwd~~~~~ 133 (342)
T 1yfq_A 67 NTDLQIYVGTVQ-----GEILKVDLIGSPSFQALTNN---EANLGICRICKYGDDKLIAASWD-----GLIEVIDPRNYG 133 (342)
T ss_dssp SSSEEEEEEETT-----SCEEEECSSSSSSEEECBSC---CCCSCEEEEEEETTTEEEEEETT-----SEEEEECHHHHT
T ss_pred CCCcEEEEEcCC-----CeEEEEEeccCCceEecccc---CCCCceEEEEeCCCCEEEEEcCC-----CeEEEEcccccc
Confidence 456 66667643 36889999 88776555431 01122223333335566666654 357777765400
Q ss_pred -------EEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCC-Cc--eeeccccCCCCCCCCcc
Q 006334 115 -------WMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKT-MR--WASPAVKGDIPVPRDSH 184 (650)
Q Consensus 115 -------W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t-~~--Wt~i~~~~~lP~~R~~h 184 (650)
.+.+ ........-.++. +..+. +++|+.+ ..+.+||+.+ .. ..... .+....-.
T Consensus 134 ~~~~~~~~~~~---~~~~~~~~v~~~~-~~~~~-l~~~~~d-------~~i~i~d~~~~~~~~~~~~~----~~~~~~i~ 197 (342)
T 1yfq_A 134 DGVIAVKNLNS---NNTKVKNKIFTMD-TNSSR-LIVGMNN-------SQVQWFRLPLCEDDNGTIEE----SGLKYQIR 197 (342)
T ss_dssp TBCEEEEESCS---SSSSSCCCEEEEE-ECSSE-EEEEEST-------TEEEEEESSCCTTCCCEEEE----CSCSSCEE
T ss_pred cccccccCCee---eEEeeCCceEEEE-ecCCc-EEEEeCC-------CeEEEEECCccccccceeee----cCCCCcee
Confidence 1111 1111111122333 33455 5555542 3588899877 33 22111 11111112
Q ss_pred eeeee--cCEEEEEeccCCCCccCeEEEEECCCC-------cEEEeeecCCCCC---cccceEEEEE--CCEEEEEeccC
Q 006334 185 SSNVI--ANRLFVYGGDCGDQYHGDIDMLDMNSL-------TWSRLAIIGSSPG---VRAGHAAINI--GTKVYIIGGVG 250 (650)
Q Consensus 185 s~v~~--~~~Iyv~GG~~~~~~~n~v~~yd~~t~-------~W~~i~~~g~~P~---~R~~~s~v~~--~~~IyI~GG~~ 250 (650)
++... ++.+++.|+.+ ..+.+||.... .-..+........ .......+.+ ++++++.|+.+
T Consensus 198 ~i~~~~~~~~~l~~~~~d-----g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 272 (342)
T 1yfq_A 198 DVALLPKEQEGYACSSID-----GRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSD 272 (342)
T ss_dssp EEEECSGGGCEEEEEETT-----SEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETT
T ss_pred EEEECCCCCCEEEEEecC-----CcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCC
Confidence 22333 45677777754 35566555433 1112221101000 0112222222 45667777643
Q ss_pred CCcccCeEEEEECCCCcEEEeecCCCCCCCcceeEEEEECCeEEEEcCCCC
Q 006334 251 DKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVTGSDIVIYGGCGE 301 (650)
Q Consensus 251 ~~~~~~dv~~yD~~t~~W~~l~~~~~~p~~R~~hsav~~~~~lyV~GG~~~ 301 (650)
..+.+||+.+.+.... .. ......-.+++ -++.+++.||.+.
T Consensus 273 -----g~i~vwd~~~~~~~~~--~~-~~h~~~v~~~~-~~~~~l~s~s~Dg 314 (342)
T 1yfq_A 273 -----GIISCWNLQTRKKIKN--FA-KFNEDSVVKIA-CSDNILCLATSDD 314 (342)
T ss_dssp -----SCEEEEETTTTEEEEE--CC-CCSSSEEEEEE-ECSSEEEEEEECT
T ss_pred -----ceEEEEcCccHhHhhh--hh-cccCCCceEec-CCCCeEEEEecCC
Confidence 3689999987764332 11 11011112333 6777888877543
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=85.10 E-value=38 Score=35.00 Aligned_cols=194 Identities=14% Similarity=0.096 Sum_probs=101.9
Q ss_pred eEEEEECCC--CcEEEeecCCCCCCCCcceEEEEE---CCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCC-
Q 006334 54 DVLMLNLDT--MVWSTLATTGQGPGPRDSHSAILW---GHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSP- 127 (650)
Q Consensus 54 dv~~yD~~t--~sW~~l~~~g~~P~pR~~hsa~~~---~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~- 127 (650)
-+++|+... .+|..+... +....-+++++. .+.||+.+..... -..+++.+-...+|+.+......+..
T Consensus 32 Gl~~~~~~~~g~~W~~~~~~---~~~~~v~~i~~dp~~~~~l~~g~~~g~~--g~gl~~s~D~G~tW~~~~~~~~~~~~~ 106 (394)
T 3b7f_A 32 GAWFLASDPARRTWELRGPV---FLGHTIHHIVQDPREPERMLMAARTGHL--GPTVFRSDDGGGNWTEATRPPAFNKAP 106 (394)
T ss_dssp EEEEEEECTTSCSEEEEEEE---STTSEEEEEEECSSSTTCEEEEEEC--C--CEEEEEESSTTSCCEECSBCCCCCCCC
T ss_pred ceEEEECCCCCCCceECCcc---CCCCceEEEEECCCCCCeEEEEecCCCC--CccEEEeCCCCCCceECCccccCCCcc
Confidence 377887654 689986421 112233444443 4678876532110 12577776677899987432111111
Q ss_pred -C-------cccEEEEEc---CCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCC--------------CCC
Q 006334 128 -R-------ESHTATLVG---DDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPV--------------PRD 182 (650)
Q Consensus 128 -R-------~~hs~~~~~---~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~--------------~R~ 182 (650)
+ ...++++.. ++.||+.+-. .-+++.+-...+|+.+......|. ...
T Consensus 107 ~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~--------ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~ 178 (394)
T 3b7f_A 107 EGETGRVVDHVFWLTPGHASEPGTWYAGTSP--------QGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPK 178 (394)
T ss_dssp ----CCCCCEEEEEEECCTTSTTCEEEEEET--------TEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCE
T ss_pred cccccccccceeEEEeCCCCCCCEEEEEecC--------CcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCc
Confidence 1 111222221 4667664321 247777767789998652111121 111
Q ss_pred cceeeee---cCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecC---CCCC-----cccceEEEEEC---CEEEEEec
Q 006334 183 SHSSNVI---ANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIG---SSPG-----VRAGHAAINIG---TKVYIIGG 248 (650)
Q Consensus 183 ~hs~v~~---~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g---~~P~-----~R~~~s~v~~~---~~IyI~GG 248 (650)
.++++.. .+.||+.... ..+++.+-...+|+.+.... .+|. ....++++... +.||+..
T Consensus 179 i~~i~~d~~~~~~l~vg~~~------ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~- 251 (394)
T 3b7f_A 179 MHSILVDPRDPKHLYIGMSS------GGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQN- 251 (394)
T ss_dssp EEEEEECTTCTTCEEEEEET------BEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEE-
T ss_pred eeEEEECCCCCCEEEEEECC------CCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEc-
Confidence 2333332 2567775432 35888887788999885210 1121 12234444432 5666642
Q ss_pred cCCCcccCeEEEEECCCCcEEEeec
Q 006334 249 VGDKHYYNDIWILNVSTCSWSQLDT 273 (650)
Q Consensus 249 ~~~~~~~~dv~~yD~~t~~W~~l~~ 273 (650)
...+++.+-...+|+.+..
T Consensus 252 ------~~gl~~s~D~G~tW~~~~~ 270 (394)
T 3b7f_A 252 ------HCGIYRMDRREGVWKRIGD 270 (394)
T ss_dssp ------TTEEEEEETTTTEEECGGG
T ss_pred ------CCeEEEeCCCCCcceECCC
Confidence 1358999988999999863
|
| >3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A | Back alignment and structure |
|---|
Probab=85.01 E-value=14 Score=38.66 Aligned_cols=156 Identities=8% Similarity=0.033 Sum_probs=84.3
Q ss_pred EEEEECCEEEEEccCCCCcccceEEEEECCCCcE--EEeecC-CCCCCCCcceEEEE-ECCEEEEEcccCCCcCcCeEEE
Q 006334 32 SACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMVW--STLATT-GQGPGPRDSHSAIL-WGHKMIVFGGTNGYKKVNDLHI 107 (650)
Q Consensus 32 s~v~~~~~IyvfGG~~~~~~~~dv~~yD~~t~sW--~~l~~~-g~~P~pR~~hsa~~-~~~~lyVfGG~~~~~~~ndv~~ 107 (650)
+++.+++.+|+|=| +.+|+++.....- ..+... ...|. ...++... .++++|+|=| +.+|+
T Consensus 185 Av~~~~g~~~fFkg-------~~~Wr~~~~~~~~~p~~I~~~wpgLP~-~iDAa~~~~~~g~~~fFkg-------~~yWr 249 (365)
T 3ba0_A 185 AVTTVGNKIFFFKD-------RFFWLKVSERPKTSVNLISSLWPTLPS-GIEAAYEIEARNQVFLFKD-------DKYWL 249 (365)
T ss_dssp CEEEETTEEEEEET-------TEEEECCSSCCCCCEEEHHHHCSSCCS-SCCEEEEEGGGTEEEEEET-------TEEEE
T ss_pred eEEEcCCeEEEEeC-------CEEEEEcCCCccCCccchhhhccCCCC-CccEEEEecCCCEEEEEeC-------CEEEE
Confidence 34557899999988 3577776543221 111110 11231 22222222 2789999977 56888
Q ss_pred EECCCCc--E-EeeecCCCCCC-CCcccEEEEEc-CCEEEEEccccCCCCcccceEEEEecCCCceee-----ccc-cCC
Q 006334 108 LDLESKE--W-MRPECRGAPPS-PRESHTATLVG-DDKMVIFGGSGEGEANYLNDLHVLDLKTMRWAS-----PAV-KGD 176 (650)
Q Consensus 108 yD~~t~~--W-~~l~~~~~~P~-~R~~hs~~~~~-~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~-----i~~-~~~ 176 (650)
|+..... + +.+...+ .|. +..--++.... ++++|+|-|. ..|+||..+++-.. +.. -..
T Consensus 250 ~~~~~~~~gyPk~I~~~G-lP~~~~~IDAA~~~~~~~~~yfFkG~---------~yw~yd~~~~~v~~gyPk~I~~~f~g 319 (365)
T 3ba0_A 250 ISNLRPEPNYPKSIHSFG-FPNFVKKIDAAVFNPRFYRTYFFVDN---------QYWRYDERRQMMDPGYPKLITKNFQG 319 (365)
T ss_dssp CSTTSCTTTCSEETTTTT-CCTTCCCCCEEEEETTTTEEEEEETT---------EEEEEETTTTEECSSCCCCHHHHSTT
T ss_pred EcCCcccCCCCceeeecc-CCCCCCCcCEEEEeCCCCEEEEEECC---------EEEEEeCCcceecCCCCcchhhcCCC
Confidence 8654221 1 1221111 222 11233444443 5899999763 48999976654321 100 012
Q ss_pred CCCCCCcceeeee-cCEEEEEeccCCCCccCeEEEEECCCCcEEEe
Q 006334 177 IPVPRDSHSSNVI-ANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRL 221 (650)
Q Consensus 177 lP~~R~~hs~v~~-~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i 221 (650)
+| ..--++... ++++|+|-| +..|+||..+.+-...
T Consensus 320 ~p--~~iDaA~~~~~g~~YfFkg-------~~ywr~d~~~~~v~~~ 356 (365)
T 3ba0_A 320 IG--PKIDAVFYSKNKYYYFFQG-------SNQFEYDFLLQRITKT 356 (365)
T ss_dssp CC--SSCSEEEEETTTEEEEEET-------TEEEEEETTTTEEEEE
T ss_pred CC--CccceeeEecCCcEEEEeC-------CEEEEEECCccEEecc
Confidence 22 223344444 789999988 6899999988876654
|
| >1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A* | Back alignment and structure |
|---|
Probab=84.77 E-value=19 Score=38.84 Aligned_cols=157 Identities=10% Similarity=0.005 Sum_probs=84.1
Q ss_pred EEEEECCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCC-CCcccEEEEEc-CCEEEEEccccCCCCcccceEE
Q 006334 82 SAILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPS-PRESHTATLVG-DDKMVIFGGSGEGEANYLNDLH 159 (650)
Q Consensus 82 sa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~-~R~~hs~~~~~-~~~Lyv~GG~~~~~~~~~~dv~ 159 (650)
+++..++.+|+|=| +.+|+++.....+....+....|. |...-++.... ++++|+|=|. .+|
T Consensus 267 Ai~~~~ge~y~Fkg-------~~~wr~~~~~~~~~p~~I~~~Wp~LP~~iDAa~~~~~~g~~~fFKg~---------~~W 330 (450)
T 1su3_A 267 AITTIRGEVMFFKD-------RFYMRTNPFYPEVELNFISVFWPQLPNGLEAAYEFADRDEVRFFKGN---------KYW 330 (450)
T ss_dssp EEEEETTEEEEEET-------TEEEECCTTSSSCEEEEGGGTCTTSCSSCCEEEEEGGGTEEEEEETT---------EEE
T ss_pred eEEecCCeEEEEeC-------CEEEEEcCCCCcccceehhHhccCCCCCeeEEEEEcCCCeEEEEeCC---------EEE
Confidence 45567899999987 467777765544433222222221 12223333332 6899999774 377
Q ss_pred EEecCCC--ce-eeccccCCCCC--CCCcceeeee-cCEEEEEeccCCCCccCeEEEEECCCCcEEE-----eee-cCCC
Q 006334 160 VLDLKTM--RW-ASPAVKGDIPV--PRDSHSSNVI-ANRLFVYGGDCGDQYHGDIDMLDMNSLTWSR-----LAI-IGSS 227 (650)
Q Consensus 160 ~yd~~t~--~W-t~i~~~~~lP~--~R~~hs~v~~-~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~-----i~~-~g~~ 227 (650)
+|+..+. .+ ..+...-.+|. .....+.... ++++|+|-| +..|+||..+.+-.. |.. -...
T Consensus 331 ~~~~~~~~~gyP~~i~~~~g~P~~~~~IDAA~~~~~~~k~yfFkG-------~~yw~yd~~~~~~~~gYPk~I~~~fpgi 403 (450)
T 1su3_A 331 AVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVA-------NKYWRYDEYKRSMDPGYPKMIAHDFPGI 403 (450)
T ss_dssp EEETTEECTTCSEEHHHHHCCCTTCCCCCEEEEETTTTEEEEEET-------TEEEEEETTTTEECSSCSEEHHHHSTTS
T ss_pred EecCCcccCCCceeeehhhcCCCCCCccceEEEEcCCCeEEEEeC-------CEEEEEeCCCccccCCCCcchhhcCCCC
Confidence 7764221 01 00110002332 1222222222 589999988 689999976543221 110 0112
Q ss_pred CCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCcEEE
Q 006334 228 PGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQ 270 (650)
Q Consensus 228 P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~ 270 (650)
| ..--++...++++|+|-| +..|+||..+.+=..
T Consensus 404 p--~~iDAA~~~~g~~YFFkg-------~~ywr~d~~~~~v~~ 437 (450)
T 1su3_A 404 G--HKVDAVFMKDGFFYFFHG-------TRQYKFDPKTKRILT 437 (450)
T ss_dssp C--SCCSEEEEETTEEEEEET-------TEEEEEETTTTEEEE
T ss_pred C--CCccEEEEcCCeEEEEeC-------CEEEEEECCcceEec
Confidence 2 222344456889999976 478999988776543
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=84.43 E-value=9.5 Score=37.98 Aligned_cols=155 Identities=6% Similarity=0.020 Sum_probs=82.6
Q ss_pred CCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCC
Q 006334 87 GHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTM 166 (650)
Q Consensus 87 ~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~ 166 (650)
+++||+.+..+ ..+++||+.+.++..+... ....-.+++...++++|+..... ......+++||+++.
T Consensus 55 ~g~l~~~~~~~-----~~i~~~d~~~~~~~~~~~~----~~~~~~~i~~~~dg~l~v~~~~~---~~~~~~i~~~d~~~~ 122 (333)
T 2dg1_A 55 QGQLFLLDVFE-----GNIFKINPETKEIKRPFVS----HKANPAAIKIHKDGRLFVCYLGD---FKSTGGIFAATENGD 122 (333)
T ss_dssp TSCEEEEETTT-----CEEEEECTTTCCEEEEEEC----SSSSEEEEEECTTSCEEEEECTT---SSSCCEEEEECTTSC
T ss_pred CCCEEEEECCC-----CEEEEEeCCCCcEEEEeeC----CCCCcceEEECCCCcEEEEeCCC---CCCCceEEEEeCCCC
Confidence 57788876432 4799999999887765211 11223344444567888765321 111246899998877
Q ss_pred ceeeccccCCCCCCCCcceeeee-cCEEEEEeccC-CCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEE-CC-E
Q 006334 167 RWASPAVKGDIPVPRDSHSSNVI-ANRLFVYGGDC-GDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINI-GT-K 242 (650)
Q Consensus 167 ~Wt~i~~~~~lP~~R~~hs~v~~-~~~Iyv~GG~~-~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~-~~-~ 242 (650)
....+.. .......-..++.. ++.+|+..... .......+++||+.+.+...+... . .....++.. ++ .
T Consensus 123 ~~~~~~~--~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~---~~~~~i~~~~dg~~ 195 (333)
T 2dg1_A 123 NLQDIIE--DLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN--I---SVANGIALSTDEKV 195 (333)
T ss_dssp SCEEEEC--SSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE--E---SSEEEEEECTTSSE
T ss_pred EEEEEEc--cCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC--C---CcccceEECCCCCE
Confidence 6552211 11111111122222 46777754321 112235799999887776665421 0 111223332 33 5
Q ss_pred EEEEeccCCCcccCeEEEEECCC
Q 006334 243 VYIIGGVGDKHYYNDIWILNVST 265 (650)
Q Consensus 243 IyI~GG~~~~~~~~dv~~yD~~t 265 (650)
||+.... ...+++||+.+
T Consensus 196 l~v~~~~-----~~~i~~~d~~~ 213 (333)
T 2dg1_A 196 LWVTETT-----ANRLHRIALED 213 (333)
T ss_dssp EEEEEGG-----GTEEEEEEECT
T ss_pred EEEEeCC-----CCeEEEEEecC
Confidence 7776422 35799999964
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=84.04 E-value=9.7 Score=39.91 Aligned_cols=145 Identities=6% Similarity=0.072 Sum_probs=68.5
Q ss_pred EEEEcccCCCcCcCeEEEEECCCC---cEEeeecCCCCCCCCcccEEEEEc-CCEEEEEccccCCCCcccceEEEEecCC
Q 006334 90 MIVFGGTNGYKKVNDLHILDLESK---EWMRPECRGAPPSPRESHTATLVG-DDKMVIFGGSGEGEANYLNDLHVLDLKT 165 (650)
Q Consensus 90 lyVfGG~~~~~~~ndv~~yD~~t~---~W~~l~~~~~~P~~R~~hs~~~~~-~~~Lyv~GG~~~~~~~~~~dv~~yd~~t 165 (650)
+++.|+.++ .+.+||+.+. .+..............-..+.... ++.+++.|+.+ ..+.+||+.+
T Consensus 196 ~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~d-------g~i~i~d~~~ 263 (430)
T 2xyi_A 196 YLLSASDDH-----TICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD-------QKLMIWDTRN 263 (430)
T ss_dssp EEEEECTTS-----CEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETT-------SEEEEEETTC
T ss_pred eEEEEeCCC-----eEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCC-------CeEEEEECCC
Confidence 677776543 5788888762 121100000001111222333333 45677777653 3588999876
Q ss_pred Cc-eeeccccCCCCCCCCcceeeee---cCEEEEEeccCCCCccCeEEEEECCCCc--EEEeeecCCCCCcccceEEEEE
Q 006334 166 MR-WASPAVKGDIPVPRDSHSSNVI---ANRLFVYGGDCGDQYHGDIDMLDMNSLT--WSRLAIIGSSPGVRAGHAAINI 239 (650)
Q Consensus 166 ~~-Wt~i~~~~~lP~~R~~hs~v~~---~~~Iyv~GG~~~~~~~n~v~~yd~~t~~--W~~i~~~g~~P~~R~~~s~v~~ 239 (650)
.. ...+. .+........++.+ +..+++.|+.+ +.+.+||+.+.. -..+.. .......+.+
T Consensus 264 ~~~~~~~~---~~~~~~~~v~~i~~~p~~~~~l~tg~~d-----g~v~vwd~~~~~~~~~~~~~------h~~~v~~i~~ 329 (430)
T 2xyi_A 264 NNTSKPSH---TVDAHTAEVNCLSFNPYSEFILATGSAD-----KTVALWDLRNLKLKLHSFES------HKDEIFQVQW 329 (430)
T ss_dssp SCSSSCSE---EEECCSSCEEEEEECSSCTTEEEEEETT-----SEEEEEETTCTTSCSEEEEC------CSSCEEEEEE
T ss_pred CCCCccee---EeecCCCCeEEEEeCCCCCCEEEEEeCC-----CeEEEEeCCCCCCCeEEeec------CCCCEEEEEE
Confidence 52 11111 01001111122222 23478888765 468899987632 122220 0111222222
Q ss_pred ---CCEEEEEeccCCCcccCeEEEEECCC
Q 006334 240 ---GTKVYIIGGVGDKHYYNDIWILNVST 265 (650)
Q Consensus 240 ---~~~IyI~GG~~~~~~~~dv~~yD~~t 265 (650)
+..+++.|+.++ .+.+||+..
T Consensus 330 sp~~~~~l~s~~~d~-----~i~iwd~~~ 353 (430)
T 2xyi_A 330 SPHNETILASSGTDR-----RLHVWDLSK 353 (430)
T ss_dssp CSSCTTEEEEEETTS-----CCEEEEGGG
T ss_pred CCCCCCEEEEEeCCC-----cEEEEeCCC
Confidence 235777777543 577888865
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=83.96 E-value=14 Score=40.29 Aligned_cols=179 Identities=15% Similarity=-0.049 Sum_probs=93.2
Q ss_pred EEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEE
Q 006334 55 VLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTAT 134 (650)
Q Consensus 55 v~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~ 134 (650)
+++||+.+.....+... +. ...+..-+++.+++++.+... ...+|++|+.+.+++.+.. .. ......+
T Consensus 134 ~~l~d~~~g~~~~l~~~---~~---~~~~~spDG~~la~~~~~~~~-~~~i~~~d~~~g~~~~l~~---~~--~~~~~~~ 201 (582)
T 3o4h_A 134 VALYALDGGGLRELARL---PG---FGFVSDIRGDLIAGLGFFGGG-RVSLFTSNLSSGGLRVFDS---GE--GSFSSAS 201 (582)
T ss_dssp EEEEEEETTEEEEEEEE---SS---CEEEEEEETTEEEEEEEEETT-EEEEEEEETTTCCCEEECC---SS--CEEEEEE
T ss_pred ceEEEccCCcEEEeecC---CC---ceEEECCCCCEEEEEEEcCCC-CeEEEEEcCCCCCceEeec---CC--Cccccce
Confidence 44778888877766543 22 223333467666666553222 2459999999998887621 11 1123344
Q ss_pred EEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCccee--------eeecCEEEEEeccCCCCccC
Q 006334 135 LVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSS--------NVIANRLFVYGGDCGDQYHG 206 (650)
Q Consensus 135 ~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~--------v~~~~~Iyv~GG~~~~~~~n 206 (650)
...|++.++.+..+ . ...++++|+++.....+. ..... ..... ..-++++|+.+..+ .
T Consensus 202 ~SpDG~~l~~~~~~---~--~~~i~~~d~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~spdg~~~~~~~~~-----g 267 (582)
T 3o4h_A 202 ISPGMKVTAGLETA---R--EARLVTVDPRDGSVEDLE---LPSKD-FSSYRPTAITWLGYLPDGRLAVVARRE-----G 267 (582)
T ss_dssp ECTTSCEEEEEECS---S--CEEEEEECTTTCCEEECC---CSCSH-HHHHCCSEEEEEEECTTSCEEEEEEET-----T
T ss_pred ECCCCCEEEEccCC---C--eeEEEEEcCCCCcEEEcc---CCCcC-hhhhhhccccceeEcCCCcEEEEEEcC-----C
Confidence 44566655533321 1 247999999988776222 11100 00011 12245676666544 2
Q ss_pred eEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCcEEEe
Q 006334 207 DIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQL 271 (650)
Q Consensus 207 ~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l 271 (650)
.+.+|+. .+... .+.......... ++++++.++... ...++|.+|..+ +.+.+
T Consensus 268 ~~~l~~~--g~~~~------~~~~~v~~~~~s-dg~~l~~~s~~~--~p~~l~~~d~~~-~~~~l 320 (582)
T 3o4h_A 268 RSAVFID--GERVE------APQGNHGRVVLW-RGKLVTSHTSLS--TPPRIVSLPSGE-PLLEG 320 (582)
T ss_dssp EEEEEET--TEEEC------CCSSEEEEEEEE-TTEEEEEEEETT--EEEEEEEETTCC-EEECC
T ss_pred cEEEEEE--CCeec------cCCCceEEEEec-CCEEEEEEcCCC--CCCeEEEEcCCC-ceEEE
Confidence 5667776 43322 112111122233 778776655332 235788888765 44443
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.44 E-value=34 Score=33.06 Aligned_cols=184 Identities=14% Similarity=0.082 Sum_probs=79.5
Q ss_pred eEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEE
Q 006334 54 DVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTA 133 (650)
Q Consensus 54 dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~ 133 (650)
.+.++|..+++-...... ......+....+.+++.|+.++ .+..++..+.........+ ........
T Consensus 90 ~v~iw~~~~~~~~~~~~~-----h~~~~~~~~~~~~~l~s~~~~~-----~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 156 (318)
T 4ggc_A 90 EVQLWDVQQQKRLRNMTS-----HSARVGSLSWNSYILSSGSRSG-----HIHHHDVRVAEHHVATLSG---HSQEVCGL 156 (318)
T ss_dssp EEEEEETTTTEEEEEEEC-----CSSCEEEEEEETTEEEEEETTS-----EEEEEETTSSSCEEEEEEC---CSSCEEEE
T ss_pred cEEEeecCCceeEEEecC-----ccceEEEeecCCCEEEEEecCC-----ceEeeecCCCceeEEEEcC---ccCceEEE
Confidence 567777777654332221 1111222333455555555432 3444555444322211111 11112223
Q ss_pred EEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee--c-CEEEEEeccCCCCccCeEEE
Q 006334 134 TLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI--A-NRLFVYGGDCGDQYHGDIDM 210 (650)
Q Consensus 134 ~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~--~-~~Iyv~GG~~~~~~~n~v~~ 210 (650)
....++.+++.|+.+ ..+.+||+.+.+-..............-.+.... + +.+++.+|... ..+..
T Consensus 157 ~~~~~~~~l~s~~~d-------~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~----~~i~l 225 (318)
T 4ggc_A 157 RWAPDGRHLASGGND-------NLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSD----RHIRI 225 (318)
T ss_dssp EECTTSSEEEEEETT-------SCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTT----CEEEE
T ss_pred EEcCCCCEEEEEecC-------cceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCC----CEEEE
Confidence 333456677777653 2477888876432211000000000000111111 2 33444445332 46778
Q ss_pred EECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCcE
Q 006334 211 LDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCSW 268 (650)
Q Consensus 211 yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W 268 (650)
+|.....-...... ............++.+++.+|..+ ..+.+||+.+.+-
T Consensus 226 wd~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~sg~~d----~~i~iwd~~~~~~ 276 (318)
T 4ggc_A 226 WNVCSGACLSAVDA---HSQVCSILWSPHYKELISGHGFAQ----NQLVIWKYPTMAK 276 (318)
T ss_dssp EETTTCCEEEEEEC---SSCEEEEEEETTTTEEEEEECTTT----CCEEEEETTTCCE
T ss_pred Eecccccccccccc---eeeeeeeeecccccceEEEEEcCC----CEEEEEECCCCcE
Confidence 88877665544321 111111112222346666655433 3588999887653
|
| >3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.24 E-value=20 Score=34.06 Aligned_cols=152 Identities=15% Similarity=0.155 Sum_probs=80.3
Q ss_pred EEEEECCEEEEEcccCCCcCcCeEEEEECCC---CcEEeeecC-CCCCCCCcccEEEEEcCCEEEEEccccCCCCcccce
Q 006334 82 SAILWGHKMIVFGGTNGYKKVNDLHILDLES---KEWMRPECR-GAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLND 157 (650)
Q Consensus 82 sa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t---~~W~~l~~~-~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~d 157 (650)
+++..++++|+|-| +.+|+++... .-=..+... ..+|. .--++....++++|+|-|. .
T Consensus 10 A~~~~~g~~~fFkg-------~~~w~~~~~~~~~gyP~~I~~~w~glP~--~iDAa~~~~~g~~yfFkg~---------~ 71 (196)
T 3c7x_A 10 TVAMLRGEMFVFKE-------RWFWRVRNNQVMDGYPMPIGQFWRGLPA--SINTAYERKDGKFVFFKGD---------K 71 (196)
T ss_dssp EEEEETTEEEEEET-------TEEEEEETTEECTTCSEEHHHHSTTCCS--SCCEEEECTTSCEEEEETT---------E
T ss_pred EEEEcCCEEEEEEC-------CEEEEEECCccCCCCceEhhHhccCCCC--CccEEEEeCCCcEEEecCC---------E
Confidence 34467899999987 5788886431 100111100 12232 2223333356889999774 4
Q ss_pred EEEEecCCCce---eeccccC-CCCCCCCcceeee-ecCEEEEEeccCCCCccCeEEEEECCCCcEEE-----eeecCCC
Q 006334 158 LHVLDLKTMRW---ASPAVKG-DIPVPRDSHSSNV-IANRLFVYGGDCGDQYHGDIDMLDMNSLTWSR-----LAIIGSS 227 (650)
Q Consensus 158 v~~yd~~t~~W---t~i~~~~-~lP~~R~~hs~v~-~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~-----i~~~g~~ 227 (650)
.|+|+..+... ..|.... .+|......+... .++++|+|-| +..|+||..+++-.. +..-..+
T Consensus 72 yw~~~~~~~~~gyPk~I~~~~~glP~~~IDAA~~~~~~g~~yfFkG-------~~yw~yd~~~~~v~~gyPk~i~~~~gi 144 (196)
T 3c7x_A 72 HWVFDEASLEPGYPKHIKELGRGLPTDKIDAALFWMPNGKTYFFRG-------NKYYRFNEELRAVDSEYPKNIKVWEGI 144 (196)
T ss_dssp EEEEETTEECTTCSEEGGGTCBSCCSSCCSEEEEETTTTEEEEEET-------TEEEEEETTTTEECTTCSEEGGGSBTC
T ss_pred EEEEeCCcccCCCCeEhhhcCCCCCCCcccEEEEEccCCEEEEEEC-------CEEEEEeCCcccccCCCCccHHHCCCc
Confidence 78887532211 0122111 2443223333322 2589999988 678999987654221 1100012
Q ss_pred CCcccceEEEEE-CC-EEEEEeccCCCcccCeEEEEECCCCc
Q 006334 228 PGVRAGHAAINI-GT-KVYIIGGVGDKHYYNDIWILNVSTCS 267 (650)
Q Consensus 228 P~~R~~~s~v~~-~~-~IyI~GG~~~~~~~~dv~~yD~~t~~ 267 (650)
|. .-.++... ++ ++|+|-| +..|+||..+.+
T Consensus 145 p~--~idaAf~~~~~~~~YfFkg-------~~y~r~d~~~~~ 177 (196)
T 3c7x_A 145 PE--SPRGSFMGSDEVFTYFYKG-------NKYWKFNNQKLK 177 (196)
T ss_dssp CS--SCSEEEECTTSSEEEEEET-------TEEEEEETTTTE
T ss_pred CC--CcceeEEecCCCEEEEEEC-------CEEEEEECCcce
Confidence 21 22333333 44 8999976 478999987764
|
| >1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A | Back alignment and structure |
|---|
Probab=83.23 E-value=34 Score=32.98 Aligned_cols=153 Identities=10% Similarity=0.127 Sum_probs=80.4
Q ss_pred EEEEECCEEEEEcccCCCcCcCeEEEEECCCCc-EEeeecCCCCC-CCCcccEEEEE-cCCEEEEEccccCCCCcccceE
Q 006334 82 SAILWGHKMIVFGGTNGYKKVNDLHILDLESKE-WMRPECRGAPP-SPRESHTATLV-GDDKMVIFGGSGEGEANYLNDL 158 (650)
Q Consensus 82 sa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~-W~~l~~~~~~P-~~R~~hs~~~~-~~~~Lyv~GG~~~~~~~~~~dv 158 (650)
+++..++++|+|=| +.+|+++..... .....+....| .+..--++... .++++|+|-|. ..
T Consensus 35 Ai~~~~g~~~fFkg-------~~~Wr~~~~~~~~~~P~~I~~~wp~lp~~IDAA~~~~~~~k~yfFkG~---------~y 98 (218)
T 1gen_A 35 GIAQIRGEIFFFKD-------RFIWRTVTPRDKPMGPLLVATFWPELPEKIDAVYEAPQEEKAVFFAGN---------EY 98 (218)
T ss_dssp EEEEETTEEEEEET-------TEEEEESSTTSCCEEEEEGGGTCTTSCSCCSEEEEETTTTEEEEEETT---------EE
T ss_pred EEEeCCCcEEEEEC-------CEEEEEeCCCCccCCCEEHHHhcCCCCCCccEEEEECCCCEEEEEeCC---------EE
Confidence 44557899999987 467777655422 22211111111 11222333333 36899999774 48
Q ss_pred EEEecCCCc--e-eeccccCCCCCC-CCcceeee--ecCEEEEEeccCCCCccCeEEEEECCCCcEEE-----eee-cCC
Q 006334 159 HVLDLKTMR--W-ASPAVKGDIPVP-RDSHSSNV--IANRLFVYGGDCGDQYHGDIDMLDMNSLTWSR-----LAI-IGS 226 (650)
Q Consensus 159 ~~yd~~t~~--W-t~i~~~~~lP~~-R~~hs~v~--~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~-----i~~-~g~ 226 (650)
|+||..+.. + ..|... .+|.. ..-.++.. .++++|+|-| +..|+||..+.+-.. +.. -..
T Consensus 99 W~y~~~~~~~gyPk~I~~~-g~p~~~~~IDAAf~~~~~g~~YfFkG-------~~ywr~d~~~~~v~~gyPr~i~~~w~g 170 (218)
T 1gen_A 99 WIYSASTLERGYPKPLTSL-GLPPDVQRVDAAFNWSKNKKTYIFAG-------DKFWRYNEVKKKMDPGFPKLIADAWNA 170 (218)
T ss_dssp EEEETTEECTTCSEEGGGG-TCCTTCCCCSEEEEETTTTEEEEEET-------TEEEEEETTTTEECSSCCEEHHHHSSS
T ss_pred EEEcCccccCCCCccHhhc-CCCCCcCCccEEEEEcCCCeEEEEEC-------CEEEEEECccccccCCCCcchhhccCC
Confidence 888842110 0 011111 22321 11223333 3689999988 689999987764221 110 011
Q ss_pred CCCcccceEEEEEC--CEEEEEeccCCCcccCeEEEEECCCCc
Q 006334 227 SPGVRAGHAAINIG--TKVYIIGGVGDKHYYNDIWILNVSTCS 267 (650)
Q Consensus 227 ~P~~R~~~s~v~~~--~~IyI~GG~~~~~~~~dv~~yD~~t~~ 267 (650)
+| ..-.++.... +.+|+|-| +..|+||..+..
T Consensus 171 ~p--~~idaAf~~~~~g~~YfFkg-------~~y~~~~~~~~~ 204 (218)
T 1gen_A 171 IP--DNLDAVVDLQGGGHSYFFKG-------AYYLKLENQSLK 204 (218)
T ss_dssp CC--SSCSEEEECTTTCEEEEEET-------TEEEEEETTEEE
T ss_pred CC--CCCCEEEEEcCCCcEEEEEC-------CEEEEEECCcee
Confidence 22 2223444444 79999966 468888876554
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=83.14 E-value=61 Score=35.87 Aligned_cols=121 Identities=16% Similarity=0.110 Sum_probs=64.0
Q ss_pred EEEEECCEEEEEcccCCCcCcCeEEEEECCCCc--EEeeecCCCCCCCCc---ccEEEEEcCCEEEEEccccCCCCcccc
Q 006334 82 SAILWGHKMIVFGGTNGYKKVNDLHILDLESKE--WMRPECRGAPPSPRE---SHTATLVGDDKMVIFGGSGEGEANYLN 156 (650)
Q Consensus 82 sa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~--W~~l~~~~~~P~~R~---~hs~~~~~~~~Lyv~GG~~~~~~~~~~ 156 (650)
+-++.+++||+.... +.++.||..+.+ |+.-........+.+ ..+.++ .+++||+.. . -.
T Consensus 63 ~P~v~~g~vyv~~~~------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~-~~~~v~~~t-~-------dg 127 (582)
T 1flg_A 63 QAIVSDGVIYVTASY------SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI-YGDKVFFGT-L-------DA 127 (582)
T ss_dssp CCEEETTEEEEEETT------TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE-ETTEEEEEE-T-------TT
T ss_pred ccEEECCEEEEEcCC------CCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE-ECCEEEEEe-C-------CC
Confidence 335679999997653 249999998774 876311100000000 112233 368887742 1 13
Q ss_pred eEEEEecCCC--ceeeccccCCCCCCC--CcceeeeecC------EEEEEeccCCCCccCeEEEEECCCCc--EEE
Q 006334 157 DLHVLDLKTM--RWASPAVKGDIPVPR--DSHSSNVIAN------RLFVYGGDCGDQYHGDIDMLDMNSLT--WSR 220 (650)
Q Consensus 157 dv~~yd~~t~--~Wt~i~~~~~lP~~R--~~hs~v~~~~------~Iyv~GG~~~~~~~n~v~~yd~~t~~--W~~ 220 (650)
.++.+|.++. .|+.-. ..+... ...+.++.++ .||+-...........++.||..+.+ |+.
T Consensus 128 ~l~AlD~~TG~~~W~~~~---~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~ 200 (582)
T 1flg_A 128 SVVALNKNTGKVVWKKKF---ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMR 200 (582)
T ss_dssp EEEEEESSSCCEEEEEEC---SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEE
T ss_pred EEEEEECCCCCEEeeecC---CCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeec
Confidence 6899998876 487522 111111 1123344566 56553211111234679999998765 865
|
| >3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A* | Back alignment and structure |
|---|
Probab=82.83 E-value=53 Score=34.90 Aligned_cols=185 Identities=17% Similarity=0.283 Sum_probs=100.3
Q ss_pred CCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeecccc--CCCCC----CCCcc
Q 006334 111 ESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVK--GDIPV----PRDSH 184 (650)
Q Consensus 111 ~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~--~~lP~----~R~~h 184 (650)
..+.|++.+.. ..|..-.-|+.+.+. +.-|.+|=. .+ .....++-.+-. .+.|...... -.+|. .-...
T Consensus 268 ~~spW~~t~L~-~i~~vTe~HSFa~i~-~~~fa~GyH-nG-Dv~PRe~G~~yf-s~~~~sp~~~vrr~i~sey~~~AsEP 342 (670)
T 3ju4_A 268 HKSPWRKTDLG-LIPSVTEVHSFATID-NNGFAMGYH-QG-DVAPREVGLFYF-PDAFNSPSNYVRRQIPSEYEPDASEP 342 (670)
T ss_dssp TTSCCEEEECC-SCTTCSEEEEEEECS-SSCEEEEEE-EC-SSSSCEEEEEEE-TTTTTCTTCCEEEECCGGGCTTEEEE
T ss_pred ccCCceecccc-cccceeeeeeeeEec-CCceEEEec-cC-CCCcceeeEEEe-cccccCCcceeeeechhhhccccccc
Confidence 34568775443 445566778888885 444566543 21 112233322222 1223211100 01121 12233
Q ss_pred eeeeecCEEEEEe-ccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccC----------CCc
Q 006334 185 SSNVIANRLFVYG-GDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVG----------DKH 253 (650)
Q Consensus 185 s~v~~~~~Iyv~G-G~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~----------~~~ 253 (650)
++-++++.||+.- |......-..+.+-+.....|+.+... -..-......+.+++.|||||-.. +..
T Consensus 343 CvkyYdgvLyLtTRgt~~~~~GS~L~rs~d~Gq~w~slrfp--~nvHhtnlPFakvgD~l~mFgsERA~nEWE~G~pD~R 420 (670)
T 3ju4_A 343 CIKYYDGVLYLITRGTRGDRLGSSLHRSRDIGQTWESLRFP--HNVHHTTLPFAKVGDDLIMFGSERAENEWEAGAPDDR 420 (670)
T ss_dssp EEEEETTEEEEEEEESCTTSCCCEEEEESSTTSSCEEEECT--TCCCSSCCCEEEETTEEEEEEECSSTTCSSTTCCCCC
T ss_pred hhhhhCCEEEEEecCcCCCCCcceeeeecccCCchhheecc--ccccccCCCcceeCCEEEEEeccccccccccCCCccc
Confidence 4457799999886 555667778899999999999998731 111223344678899999998542 111
Q ss_pred ---ccCeEE--EEEC-----CCCcEEEeecC---CCCCCCcceeEEEEE-CCeE-EEEcCCCCC
Q 006334 254 ---YYNDIW--ILNV-----STCSWSQLDTC---GQQPQGRFSHAAVVT-GSDI-VIYGGCGED 302 (650)
Q Consensus 254 ---~~~dv~--~yD~-----~t~~W~~l~~~---~~~p~~R~~hsav~~-~~~l-yV~GG~~~~ 302 (650)
.+...+ +.++ +.-+|..+... +.+...-.+-+.+++ ++.| |||||.+..
T Consensus 421 Y~a~yPRtF~~r~nv~~W~~d~~ew~nItdqIYqG~ivNsavGVGSv~vKD~~lyyiFGgEd~~ 484 (670)
T 3ju4_A 421 YKASYPRTFYARLNVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVVKDNYIYYMFGGEDHF 484 (670)
T ss_dssp SSCBCCEEEEEEEETTTCCCTTCCCEEEEECBBCCSSSCCCSEEEEEEEETTEEEEEEEEBCSC
T ss_pred ccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEeCCEEEEEecCcccC
Confidence 122233 3333 33457776642 344444556666665 5665 699996543
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=82.80 E-value=50 Score=34.59 Aligned_cols=202 Identities=8% Similarity=-0.023 Sum_probs=105.5
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEcccCCCcCcCeEEEEECCCCc
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW--GHKMIVFGGTNGYKKVNDLHILDLESKE 114 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~--~~~lyVfGG~~~~~~~ndv~~yD~~t~~ 114 (650)
++.||+.... .+.++++|+.++.-..+..... ..+ +++. ++.||+...... ..++++|..+..
T Consensus 141 ~g~lyv~d~~-----~~~I~~id~~~g~~~~~~~~~~-----~~~-ia~~~~g~~l~~~d~~~~----~~I~~~d~~~~~ 205 (409)
T 3hrp_A 141 NNTVLAYQRD-----DPRVRLISVDDNKVTTVHPGFK-----GGK-PAVTKDKQRVYSIGWEGT----HTVYVYMKASGW 205 (409)
T ss_dssp TTEEEEEETT-----TTEEEEEETTTTEEEEEEETCC-----BCB-CEECTTSSEEEEEBSSTT----CEEEEEEGGGTT
T ss_pred CCCEEEEecC-----CCcEEEEECCCCEEEEeeccCC-----CCc-eeEecCCCcEEEEecCCC----ceEEEEEcCCCc
Confidence 5788887652 2468999999887666544322 122 3332 345666543211 179999987653
Q ss_pred -EEeeecCCCCCCCCcccEEEEEc-CCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCc-c-eeeee-
Q 006334 115 -WMRPECRGAPPSPRESHTATLVG-DDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDS-H-SSNVI- 189 (650)
Q Consensus 115 -W~~l~~~~~~P~~R~~hs~~~~~-~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~-h-s~v~~- 189 (650)
...+... .......-+.+++.. ++.||+.-. ...+++||+.+.....+...+........ . .++..
T Consensus 206 ~~~~~g~~-~~~~~~~p~~iav~p~~g~lyv~d~--------~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p 276 (409)
T 3hrp_A 206 APTRIGQL-GSTFSGKIGAVALDETEEWLYFVDS--------NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYF 276 (409)
T ss_dssp CEEEEEEC-CTTSCSCCCBCEECTTSSEEEEECT--------TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEET
T ss_pred eeEEeeec-cchhcCCcEEEEEeCCCCeEEEEEC--------CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeC
Confidence 2222000 010122234455554 688888321 13699999987765544211111111222 1 33433
Q ss_pred -cCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCC--------cc-cce-EEEEE-CCEEEEEeccCCCcccCe
Q 006334 190 -ANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPG--------VR-AGH-AAINI-GTKVYIIGGVGDKHYYND 257 (650)
Q Consensus 190 -~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~--------~R-~~~-s~v~~-~~~IyI~GG~~~~~~~~d 257 (650)
++.||+.... .+.+++|+++.. ...+......+. .+ ... .++.. ++.||+.-.. ....
T Consensus 277 ~~g~lyv~d~~-----~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~----~~~~ 346 (409)
T 3hrp_A 277 VDSNFYMSDQN-----LSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGF----KGYC 346 (409)
T ss_dssp TTTEEEEEETT-----TTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETT----TTCE
T ss_pred CCCEEEEEeCC-----CCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCC----CCCE
Confidence 4789987432 357999998765 333332210000 01 112 23332 3578888420 2357
Q ss_pred EEEEECCCCcEEEee
Q 006334 258 IWILNVSTCSWSQLD 272 (650)
Q Consensus 258 v~~yD~~t~~W~~l~ 272 (650)
|++||+.+.....+.
T Consensus 347 I~~~~~~~G~v~~~~ 361 (409)
T 3hrp_A 347 LRKLDILDGYVSTVA 361 (409)
T ss_dssp EEEEETTTTEEEEEE
T ss_pred EEEEECCCCEEEEEe
Confidence 999997777666554
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=82.77 E-value=34 Score=33.67 Aligned_cols=141 Identities=9% Similarity=0.044 Sum_probs=70.8
Q ss_pred eEEEEECCCCcE-EeeecCCCCCCCCcccEEEEEcC----CEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCC
Q 006334 104 DLHILDLESKEW-MRPECRGAPPSPRESHTATLVGD----DKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIP 178 (650)
Q Consensus 104 dv~~yD~~t~~W-~~l~~~~~~P~~R~~hs~~~~~~----~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP 178 (650)
.+.+||..+... ..+...........-.++....+ +.+++.|+.+ ..+.+||+.+.+-...- . ..
T Consensus 45 ~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d-------g~i~v~d~~~~~~~~~~-~-~~- 114 (366)
T 3k26_A 45 RVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSR-------GIIRIINPITMQCIKHY-V-GH- 114 (366)
T ss_dssp EEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETT-------CEEEEECTTTCCEEEEE-E-SC-
T ss_pred EEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCC-------CEEEEEEchhceEeeee-c-CC-
Confidence 577788776543 22221111111222333344434 5778888763 35888888765432211 0 11
Q ss_pred CCCCcceeeee--cCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEE--CCEEEEEeccCCCcc
Q 006334 179 VPRDSHSSNVI--ANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINI--GTKVYIIGGVGDKHY 254 (650)
Q Consensus 179 ~~R~~hs~v~~--~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~--~~~IyI~GG~~~~~~ 254 (650)
...-.++... ++.+++.|+.+ ..+..||+.+.+-...-. ...........+.+ ++..++.|+.+
T Consensus 115 -~~~i~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d---- 182 (366)
T 3k26_A 115 -GNAINELKFHPRDPNLLLSVSKD-----HALRLWNIQTDTLVAIFG--GVEGHRDEVLSADYDLLGEKIMSCGMD---- 182 (366)
T ss_dssp -CSCEEEEEECSSCTTEEEEEETT-----SCEEEEETTTTEEEEEEC--STTSCSSCEEEEEECTTSSEEEEEETT----
T ss_pred -CCcEEEEEECCCCCCEEEEEeCC-----CeEEEEEeecCeEEEEec--ccccccCceeEEEECCCCCEEEEecCC----
Confidence 1111122222 45677777765 478999998776443321 11111222223332 35667777654
Q ss_pred cCeEEEEECCCCc
Q 006334 255 YNDIWILNVSTCS 267 (650)
Q Consensus 255 ~~dv~~yD~~t~~ 267 (650)
..+.+||+.+.+
T Consensus 183 -g~i~i~d~~~~~ 194 (366)
T 3k26_A 183 -HSLKLWRINSKR 194 (366)
T ss_dssp -SCEEEEESCSHH
T ss_pred -CCEEEEECCCCc
Confidence 368888987653
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=82.21 E-value=35 Score=38.14 Aligned_cols=190 Identities=13% Similarity=0.104 Sum_probs=91.2
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEE-ECCEEEEEcccCCCcCcCeEEEEECCCCcE
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAIL-WGHKMIVFGGTNGYKKVNDLHILDLESKEW 115 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~-~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W 115 (650)
++.+++.|+.+ ..+.++|+.+..-...-.. . ...-.++++ .+++.++.|+.++ .+.++|.....-
T Consensus 441 ~g~~l~sgs~D-----g~v~vwd~~~~~~~~~~~~-h---~~~v~~~~~s~~~~~l~s~s~D~-----~i~iwd~~~~~~ 506 (694)
T 3dm0_A 441 DGQFALSGSWD-----GELRLWDLAAGVSTRRFVG-H---TKDVLSVAFSLDNRQIVSASRDR-----TIKLWNTLGECK 506 (694)
T ss_dssp TSSEEEEEETT-----SEEEEEETTTTEEEEEEEC-C---SSCEEEEEECTTSSCEEEEETTS-----CEEEECTTSCEE
T ss_pred CCCEEEEEeCC-----CcEEEEECCCCcceeEEeC-C---CCCEEEEEEeCCCCEEEEEeCCC-----EEEEEECCCCcc
Confidence 35666666643 3688889887654332111 1 111122222 2566677777543 466666654422
Q ss_pred EeeecCCCCCCCCcccEEEEE-cCC--EEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee--c
Q 006334 116 MRPECRGAPPSPRESHTATLV-GDD--KMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI--A 190 (650)
Q Consensus 116 ~~l~~~~~~P~~R~~hs~~~~-~~~--~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~--~ 190 (650)
..+. ......+..-..+.+ .++ .+++.|+.+ ..+.+||+.+.+-...- ......-..+.+ +
T Consensus 507 ~~~~--~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d-------~~v~vwd~~~~~~~~~~-----~~h~~~v~~v~~spd 572 (694)
T 3dm0_A 507 YTIS--EGGEGHRDWVSCVRFSPNTLQPTIVSASWD-------KTVKVWNLSNCKLRSTL-----AGHTGYVSTVAVSPD 572 (694)
T ss_dssp EEEC--SSTTSCSSCEEEEEECSCSSSCEEEEEETT-------SCEEEEETTTCCEEEEE-----CCCSSCEEEEEECTT
T ss_pred eeec--cCCCCCCCcEEEEEEeCCCCcceEEEEeCC-------CeEEEEECCCCcEEEEE-----cCCCCCEEEEEEeCC
Confidence 2221 111111111222223 222 456666653 24788888765443211 111111122222 4
Q ss_pred CEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCcEE
Q 006334 191 NRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCSWS 269 (650)
Q Consensus 191 ~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~ 269 (650)
+.+++.|+.+ ..+.+||+.+.+-... ......-.+++...+..+++++.+ ..+.+||+.+..-.
T Consensus 573 g~~l~sg~~D-----g~i~iwd~~~~~~~~~-----~~~~~~v~~~~~sp~~~~l~~~~~-----~~i~iwd~~~~~~~ 636 (694)
T 3dm0_A 573 GSLCASGGKD-----GVVLLWDLAEGKKLYS-----LEANSVIHALCFSPNRYWLCAATE-----HGIKIWDLESKSIV 636 (694)
T ss_dssp SSEEEEEETT-----SBCEEEETTTTEEEEC-----CBCSSCEEEEEECSSSSEEEEEET-----TEEEEEETTTTEEE
T ss_pred CCEEEEEeCC-----CeEEEEECCCCceEEE-----ecCCCcEEEEEEcCCCcEEEEEcC-----CCEEEEECCCCCCh
Confidence 6777777765 3688889877653221 111122233444444444444432 34889999887543
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=81.93 E-value=58 Score=34.77 Aligned_cols=172 Identities=5% Similarity=0.018 Sum_probs=81.1
Q ss_pred CCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCC
Q 006334 87 GHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTM 166 (650)
Q Consensus 87 ~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~ 166 (650)
+++.++.|+.+ ..+..||.....-..+.. . ...-.++....++++++.++.+ ..+.+||....
T Consensus 396 dg~~l~~~~~d-----~~v~~~~~~~~~~~~~~~---~--~~~v~~~~~s~d~~~l~~~~~d-------~~v~~w~~~~~ 458 (577)
T 2ymu_A 396 DGQTIASASDD-----KTVKLWNRNGQLLQTLTG---H--SSSVWGVAFSPDDQTIASASDD-------KTVKLWNRNGQ 458 (577)
T ss_dssp TSSCEEEEETT-----SEEEEECTTCCEEEEEEC---C--SSCEEEEEECTTSSEEEEEETT-------SEEEEEETTSC
T ss_pred CCCEEEEEeCC-----CEEEEEeCCCCEEEEecC---C--CCCeEEEEECCCCCEEEEEcCC-------CEEEEEECCCC
Confidence 56667777654 356777754433332211 1 1112233334467777777753 24777786544
Q ss_pred ceeeccccCCCCCCCCcceeeee-cCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEE
Q 006334 167 RWASPAVKGDIPVPRDSHSSNVI-ANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYI 245 (650)
Q Consensus 167 ~Wt~i~~~~~lP~~R~~hs~v~~-~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI 245 (650)
....+. .. ...-.+++.. ++++++.|+.+ ..+..||.....-..+... .......+...++++++
T Consensus 459 ~~~~~~---~~--~~~v~~~~~spd~~~las~~~d-----~~i~iw~~~~~~~~~~~~h----~~~v~~l~~s~dg~~l~ 524 (577)
T 2ymu_A 459 LLQTLT---GH--SSSVRGVAFSPDGQTIASASDD-----KTVKLWNRNGQLLQTLTGH----SSSVRGVAFSPDGQTIA 524 (577)
T ss_dssp EEEEEE---CC--SSCEEEEEECTTSCEEEEEETT-----SEEEEEETTSCEEEEEECC----SSCEEEEEECTTSSCEE
T ss_pred EEEEEc---CC--CCCEEEEEEcCCCCEEEEEeCC-----CEEEEEcCCCCEEEEEeCC----CCCEEEEEEcCCCCEEE
Confidence 333322 11 1111122222 56777777654 3678888655443333311 11111111223456777
Q ss_pred EeccCCCcccCeEEEEECCCCcEEEeecCCCCCCCcceeEEEEE-CCeEEEEcCC
Q 006334 246 IGGVGDKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVT-GSDIVIYGGC 299 (650)
Q Consensus 246 ~GG~~~~~~~~dv~~yD~~t~~W~~l~~~~~~p~~R~~hsav~~-~~~lyV~GG~ 299 (650)
.|+.+ ..+.+||........+.. ...... ++++. +++.++.||.
T Consensus 525 s~~~d-----g~v~lwd~~~~~~~~~~~----h~~~v~-~~~fs~dg~~l~s~~~ 569 (577)
T 2ymu_A 525 SASDD-----KTVKLWNRNGQLLQTLTG----HSSSVW-GVAFSPDGQTIASASS 569 (577)
T ss_dssp EEETT-----SEEEEECTTSCEEEEEEC----CSSCEE-EEEECTTSSCEEEEET
T ss_pred EEECc-----CEEEEEeCCCCEEEEEcC----CCCCEE-EEEEcCCCCEEEEEeC
Confidence 77653 257788865544443321 111111 22232 5666666664
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=81.83 E-value=41 Score=32.91 Aligned_cols=185 Identities=9% Similarity=0.055 Sum_probs=91.2
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCc----EEEeecCCCCCCCCcceEEEE-ECCE-EEEEcccCCCcCcCeEEEEEC
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMV----WSTLATTGQGPGPRDSHSAIL-WGHK-MIVFGGTNGYKKVNDLHILDL 110 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~s----W~~l~~~g~~P~pR~~hsa~~-~~~~-lyVfGG~~~~~~~ndv~~yD~ 110 (650)
++.+++.|+.+ ..+.+||..+.. ...+... ...-.++++ .+++ +++.|+.++ .+.+||+
T Consensus 22 ~~~~l~~~~~d-----~~v~iw~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~l~~~~~dg-----~i~~wd~ 86 (342)
T 1yfq_A 22 SKSLLLITSWD-----GSLTVYKFDIQAKNVDLLQSLRY-----KHPLLCCNFIDNTDLQIYVGTVQG-----EILKVDL 86 (342)
T ss_dssp GGTEEEEEETT-----SEEEEEEEETTTTEEEEEEEEEC-----SSCEEEEEEEESSSEEEEEEETTS-----CEEEECS
T ss_pred CCCEEEEEcCC-----CeEEEEEeCCCCccccceeeeec-----CCceEEEEECCCCCcEEEEEcCCC-----eEEEEEe
Confidence 34555666643 357788876665 3333221 111223333 3677 777777543 6889999
Q ss_pred -CCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCc-------eeeccccCCCCCCCC
Q 006334 111 -ESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMR-------WASPAVKGDIPVPRD 182 (650)
Q Consensus 111 -~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~-------Wt~i~~~~~lP~~R~ 182 (650)
.+.....+.. . .....-.++.... +.+++.|+.+ ..+.+||+.+.. ...+. .+.....
T Consensus 87 ~~~~~~~~~~~--~-~~~~~v~~l~~~~-~~~l~s~~~d-------~~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~ 152 (342)
T 1yfq_A 87 IGSPSFQALTN--N-EANLGICRICKYG-DDKLIAASWD-------GLIEVIDPRNYGDGVIAVKNLNSN---NTKVKNK 152 (342)
T ss_dssp SSSSSEEECBS--C-CCCSCEEEEEEET-TTEEEEEETT-------SEEEEECHHHHTTBCEEEEESCSS---SSSSCCC
T ss_pred ccCCceEeccc--c-CCCCceEEEEeCC-CCEEEEEcCC-------CeEEEEcccccccccccccCCeee---EEeeCCc
Confidence 8877655421 0 0112223344444 6667777753 357788876400 22121 1222222
Q ss_pred cceeeeecCEEEEEeccCCCCccCeEEEEECCC-Cc--EEEeeecCCCCCcccceEEEEE--CCEEEEEeccCCCcccCe
Q 006334 183 SHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNS-LT--WSRLAIIGSSPGVRAGHAAINI--GTKVYIIGGVGDKHYYND 257 (650)
Q Consensus 183 ~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t-~~--W~~i~~~g~~P~~R~~~s~v~~--~~~IyI~GG~~~~~~~~d 257 (650)
-.++....+. ++.|+.+ ..+..||+.+ .. ...... +....-.+++.. ++++++.|+.++ .
T Consensus 153 v~~~~~~~~~-l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~----~~~~~i~~i~~~~~~~~~l~~~~~dg-----~ 217 (342)
T 1yfq_A 153 IFTMDTNSSR-LIVGMNN-----SQVQWFRLPLCEDDNGTIEES----GLKYQIRDVALLPKEQEGYACSSIDG-----R 217 (342)
T ss_dssp EEEEEECSSE-EEEEEST-----TEEEEEESSCCTTCCCEEEEC----SCSSCEEEEEECSGGGCEEEEEETTS-----E
T ss_pred eEEEEecCCc-EEEEeCC-----CeEEEEECCccccccceeeec----CCCCceeEEEECCCCCCEEEEEecCC-----c
Confidence 2233334455 5555543 4789999887 33 322221 111112223333 457777776532 4
Q ss_pred EEEEECCC
Q 006334 258 IWILNVST 265 (650)
Q Consensus 258 v~~yD~~t 265 (650)
+.+||+..
T Consensus 218 i~i~~~~~ 225 (342)
T 1yfq_A 218 VAVEFFDD 225 (342)
T ss_dssp EEEEECCT
T ss_pred EEEEEEcC
Confidence 55555543
|
| >3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A | Back alignment and structure |
|---|
Probab=81.44 E-value=15 Score=38.49 Aligned_cols=154 Identities=9% Similarity=0.042 Sum_probs=81.9
Q ss_pred EEEEECCEEEEEcccCCCcCcCeEEEEECCCCcE--EeeecC-CCCCCCCcccEEEEE-cCCEEEEEccccCCCCcccce
Q 006334 82 SAILWGHKMIVFGGTNGYKKVNDLHILDLESKEW--MRPECR-GAPPSPRESHTATLV-GDDKMVIFGGSGEGEANYLND 157 (650)
Q Consensus 82 sa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W--~~l~~~-~~~P~~R~~hs~~~~-~~~~Lyv~GG~~~~~~~~~~d 157 (650)
+++..++++|+|=| +.+|+++.....- ..+... ..+| ...-++... .++++|+|-|. .
T Consensus 185 Av~~~~g~~~fFkg-------~~~Wr~~~~~~~~~p~~I~~~wpgLP--~~iDAa~~~~~~g~~~fFkg~---------~ 246 (365)
T 3ba0_A 185 AVTTVGNKIFFFKD-------RFFWLKVSERPKTSVNLISSLWPTLP--SGIEAAYEIEARNQVFLFKDD---------K 246 (365)
T ss_dssp CEEEETTEEEEEET-------TEEEECCSSCCCCCEEEHHHHCSSCC--SSCCEEEEEGGGTEEEEEETT---------E
T ss_pred eEEEcCCeEEEEeC-------CEEEEEcCCCccCCccchhhhccCCC--CCccEEEEecCCCEEEEEeCC---------E
Confidence 34556899999877 4577776543211 111000 1222 222333333 36899999774 3
Q ss_pred EEEEecCCCc--ee-eccccCCCCCCC-Ccceeeee--cCEEEEEeccCCCCccCeEEEEECCCCcEEE-----eee-cC
Q 006334 158 LHVLDLKTMR--WA-SPAVKGDIPVPR-DSHSSNVI--ANRLFVYGGDCGDQYHGDIDMLDMNSLTWSR-----LAI-IG 225 (650)
Q Consensus 158 v~~yd~~t~~--Wt-~i~~~~~lP~~R-~~hs~v~~--~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~-----i~~-~g 225 (650)
.|+|+..... +- .+... .+|..- .--++... ++++|+|-| +..|+||..+.+-.. |.. -.
T Consensus 247 yWr~~~~~~~~gyPk~I~~~-GlP~~~~~IDAA~~~~~~~~~yfFkG-------~~yw~yd~~~~~v~~gyPk~I~~~f~ 318 (365)
T 3ba0_A 247 YWLISNLRPEPNYPKSIHSF-GFPNFVKKIDAAVFNPRFYRTYFFVD-------NQYWRYDERRQMMDPGYPKLITKNFQ 318 (365)
T ss_dssp EEECSTTSCTTTCSEETTTT-TCCTTCCCCCEEEEETTTTEEEEEET-------TEEEEEETTTTEECSSCCCCHHHHST
T ss_pred EEEEcCCcccCCCCceeeec-cCCCCCCCcCEEEEeCCCCEEEEEEC-------CEEEEEeCCcceecCCCCcchhhcCC
Confidence 7888643211 11 12211 233311 11223333 479999988 688999987654221 000 00
Q ss_pred CCCCcccceEEEEE-CCEEEEEeccCCCcccCeEEEEECCCCcEEE
Q 006334 226 SSPGVRAGHAAINI-GTKVYIIGGVGDKHYYNDIWILNVSTCSWSQ 270 (650)
Q Consensus 226 ~~P~~R~~~s~v~~-~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~ 270 (650)
..| ..-.++... ++++|+|-| +..|+||..+.+-..
T Consensus 319 g~p--~~iDaA~~~~~g~~YfFkg-------~~ywr~d~~~~~v~~ 355 (365)
T 3ba0_A 319 GIG--PKIDAVFYSKNKYYYFFQG-------SNQFEYDFLLQRITK 355 (365)
T ss_dssp TCC--SSCSEEEEETTTEEEEEET-------TEEEEEETTTTEEEE
T ss_pred CCC--CccceeeEecCCcEEEEeC-------CEEEEEECCccEEec
Confidence 111 222334444 789999966 479999998876654
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=81.27 E-value=22 Score=35.73 Aligned_cols=145 Identities=16% Similarity=0.079 Sum_probs=76.9
Q ss_pred CEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCc
Q 006334 88 HKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMR 167 (650)
Q Consensus 88 ~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~ 167 (650)
+.+|+++-. ...+++||+.++....+.. + ..-.+++...++++|+... +.+++||+.+.+
T Consensus 61 ~~l~~~d~~-----~~~i~~~d~~~~~~~~~~~----~--~~v~~i~~~~dg~l~v~~~---------~gl~~~d~~~g~ 120 (326)
T 2ghs_A 61 GTAWWFNIL-----ERELHELHLASGRKTVHAL----P--FMGSALAKISDSKQLIASD---------DGLFLRDTATGV 120 (326)
T ss_dssp TEEEEEEGG-----GTEEEEEETTTTEEEEEEC----S--SCEEEEEEEETTEEEEEET---------TEEEEEETTTCC
T ss_pred CEEEEEECC-----CCEEEEEECCCCcEEEEEC----C--CcceEEEEeCCCeEEEEEC---------CCEEEEECCCCc
Confidence 678877643 2479999999887655421 1 1223444445788877531 248999998888
Q ss_pred eeeccccC-CCCCCCCcceeeeecCEEEEEec-cCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEE-CC-EE
Q 006334 168 WASPAVKG-DIPVPRDSHSSNVIANRLFVYGG-DCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINI-GT-KV 243 (650)
Q Consensus 168 Wt~i~~~~-~lP~~R~~hs~v~~~~~Iyv~GG-~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~-~~-~I 243 (650)
+..+.... ..+..+....++.-++++|+... .........+++|| +.+...+... . ......+.. ++ .+
T Consensus 121 ~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~--~---~~~~~i~~s~dg~~l 193 (326)
T 2ghs_A 121 LTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFAD--I---SIPNSICFSPDGTTG 193 (326)
T ss_dssp EEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEE--E---SSEEEEEECTTSCEE
T ss_pred EEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCC--C---cccCCeEEcCCCCEE
Confidence 77553111 11111111111222467776432 11112345799999 4666554321 0 111223332 34 57
Q ss_pred EEEeccCCCcccCeEEEEECC
Q 006334 244 YIIGGVGDKHYYNDIWILNVS 264 (650)
Q Consensus 244 yI~GG~~~~~~~~dv~~yD~~ 264 (650)
|+.... ...|++||+.
T Consensus 194 yv~~~~-----~~~I~~~d~~ 209 (326)
T 2ghs_A 194 YFVDTK-----VNRLMRVPLD 209 (326)
T ss_dssp EEEETT-----TCEEEEEEBC
T ss_pred EEEECC-----CCEEEEEEcc
Confidence 776321 3579999985
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=81.19 E-value=51 Score=33.63 Aligned_cols=119 Identities=10% Similarity=0.096 Sum_probs=58.0
Q ss_pred CEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEcccCC----CcCcCeEEEEECC
Q 006334 38 GAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW--GHKMIVFGGTNG----YKKVNDLHILDLE 111 (650)
Q Consensus 38 ~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~--~~~lyVfGG~~~----~~~~ndv~~yD~~ 111 (650)
.++|+.-........+.+++||..+.+-...-.. .... .+++. +..+|+..-... ....+.+..||+.
T Consensus 16 ~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~-----g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~ 89 (361)
T 2oiz_A 16 NRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPT-----AFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDAD 89 (361)
T ss_dssp GEEEEEECCGGGGGGCEEEEEETTTCCEEEEEEC-----CEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETT
T ss_pred CEEEEECCCCCccccCeEEEEECCCCeEEEEecC-----CCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECc
Confidence 4566654322222346899999988765432222 2222 33333 457888653211 1124568999998
Q ss_pred CCcE-EeeecCCCCC-CCCcccEEEEEcCC-EEEEEccccCCCCcccceEEEEecCCCce
Q 006334 112 SKEW-MRPECRGAPP-SPRESHTATLVGDD-KMVIFGGSGEGEANYLNDLHVLDLKTMRW 168 (650)
Q Consensus 112 t~~W-~~l~~~~~~P-~~R~~hs~~~~~~~-~Lyv~GG~~~~~~~~~~dv~~yd~~t~~W 168 (650)
+.+- ..+....... ....-+.+++..++ .||+.... ..+.+.+||+.+++-
T Consensus 90 t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~------~~~~v~v~d~~~~~~ 143 (361)
T 2oiz_A 90 KLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNAS------PATSIGIVDVAKGDY 143 (361)
T ss_dssp TCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEES------SSEEEEEEETTTTEE
T ss_pred CCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCC------CCCeEEEEECCCCcE
Confidence 7653 2332211000 01122334444444 55554221 024688888877644
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=80.55 E-value=53 Score=33.41 Aligned_cols=184 Identities=15% Similarity=0.132 Sum_probs=88.7
Q ss_pred eEEEEECCCCcEEEeecCCCCCCCC--cceEEEE--ECCEEEEEcccCCCcCcCeEEEEECCCC--cEEeeecCCCCCCC
Q 006334 54 DVLMLNLDTMVWSTLATTGQGPGPR--DSHSAIL--WGHKMIVFGGTNGYKKVNDLHILDLESK--EWMRPECRGAPPSP 127 (650)
Q Consensus 54 dv~~yD~~t~sW~~l~~~g~~P~pR--~~hsa~~--~~~~lyVfGG~~~~~~~ndv~~yD~~t~--~W~~l~~~~~~P~~ 127 (650)
.+.+||+.++.-........ +... .-.++.+ .++.+++.|+.++ .+..+|+... ....+. + . .
T Consensus 181 ~i~~wd~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~l~sgs~D~-----~v~~wd~~~~~~~~~~~~--~-h--~ 249 (380)
T 3iz6_a 181 TCVLWDVTTGQRISIFGSEF-PSGHTADVLSLSINSLNANMFISGSCDT-----TVRLWDLRITSRAVRTYH--G-H--E 249 (380)
T ss_dssp CEEEECTTTCCEEEEECCCS-SSSCCSCEEEEEECSSSCCEEEEEETTS-----CEEEEETTTTCCCCEEEC--C-C--S
T ss_pred cEEEEEcCCCcEEEEeeccc-CCCCccCeEEEEeecCCCCEEEEEECCC-----eEEEEECCCCCcceEEEC--C-c--C
Confidence 57888988876544321111 1111 1112222 2567888888654 5777887632 122211 1 0 1
Q ss_pred CcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCC-C-CCCCC-cceeee-ecCEEEEEeccCCCC
Q 006334 128 RESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGD-I-PVPRD-SHSSNV-IANRLFVYGGDCGDQ 203 (650)
Q Consensus 128 R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~-l-P~~R~-~hs~v~-~~~~Iyv~GG~~~~~ 203 (650)
..-.++....++..++.|+.+ ..+.+||+.+..-...-.... . ..... -.+++. .++.+++.|+.+
T Consensus 250 ~~v~~v~~~p~~~~l~s~s~D-------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d--- 319 (380)
T 3iz6_a 250 GDINSVKFFPDGQRFGTGSDD-------GTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSN--- 319 (380)
T ss_dssp SCCCEEEECTTSSEEEEECSS-------SCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTT---
T ss_pred CCeEEEEEecCCCeEEEEcCC-------CeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECC---
Confidence 112334444567778888764 247888987764332110000 0 00001 112222 256677776654
Q ss_pred ccCeEEEEECCCCcEEE-eeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCC
Q 006334 204 YHGDIDMLDMNSLTWSR-LAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVST 265 (650)
Q Consensus 204 ~~n~v~~yd~~t~~W~~-i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t 265 (650)
..+.+||..+.+-.. +......-..+....+...++++++.|+.++ .+.+|++..
T Consensus 320 --g~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~-----~i~iW~~~~ 375 (380)
T 3iz6_a 320 --GDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDK-----NLKIWAFSG 375 (380)
T ss_dssp --SCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTS-----CEEEEECCS
T ss_pred --CCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCC-----CEEEEecCC
Confidence 478899987765432 2110000111222222233567777877653 466666654
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.53 E-value=49 Score=32.97 Aligned_cols=106 Identities=11% Similarity=0.093 Sum_probs=58.5
Q ss_pred CCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCC
Q 006334 87 GHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTM 166 (650)
Q Consensus 87 ~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~ 166 (650)
++.+++.|+.++ .+..||+.+.+-..+.. ........++....++.+++.|+.+ ..+.+||+.+.
T Consensus 138 ~~~~l~s~s~dg-----~i~~wd~~~~~~~~~~~---~~~~~~i~~~~~~pdg~~lasg~~d-------g~i~iwd~~~~ 202 (343)
T 3lrv_A 138 NTEYFIWADNRG-----TIGFQSYEDDSQYIVHS---AKSDVEYSSGVLHKDSLLLALYSPD-------GILDVYNLSSP 202 (343)
T ss_dssp -CCEEEEEETTC-----CEEEEESSSSCEEEEEC---CCSSCCCCEEEECTTSCEEEEECTT-------SCEEEEESSCT
T ss_pred CCCEEEEEeCCC-----cEEEEECCCCcEEEEEe---cCCCCceEEEEECCCCCEEEEEcCC-------CEEEEEECCCC
Confidence 466777777543 57889998877644311 1112223445555577888888763 35889998876
Q ss_pred cee--eccccCCCCCCCCcceeeee-cCEEEEEeccCCCCccCeEEEEECCCCc
Q 006334 167 RWA--SPAVKGDIPVPRDSHSSNVI-ANRLFVYGGDCGDQYHGDIDMLDMNSLT 217 (650)
Q Consensus 167 ~Wt--~i~~~~~lP~~R~~hs~v~~-~~~Iyv~GG~~~~~~~n~v~~yd~~t~~ 217 (650)
.-. .+. ......-.++... ++..++.|+ + +.+..||+.+..
T Consensus 203 ~~~~~~~~----~~h~~~v~~l~fs~~g~~l~s~~-~-----~~v~iwd~~~~~ 246 (343)
T 3lrv_A 203 DQASSRFP----VDEEAKIKEVKFADNGYWMVVEC-D-----QTVVCFDLRKDV 246 (343)
T ss_dssp TSCCEECC----CCTTSCEEEEEECTTSSEEEEEE-S-----SBEEEEETTSST
T ss_pred CCCccEEe----ccCCCCEEEEEEeCCCCEEEEEe-C-----CeEEEEEcCCCC
Confidence 543 121 1001111122222 455666665 3 278899987653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 650 | ||||
| d1zgka1 | 288 | b.68.11.1 (A:322-609) Kelch-like ECH-associated pr | 6e-16 | |
| d1zgka1 | 288 | b.68.11.1 (A:322-609) Kelch-like ECH-associated pr | 1e-07 | |
| d1zgka1 | 288 | b.68.11.1 (A:322-609) Kelch-like ECH-associated pr | 4e-07 | |
| d1zgka1 | 288 | b.68.11.1 (A:322-609) Kelch-like ECH-associated pr | 2e-06 | |
| d1k3ia3 | 387 | b.69.1.1 (A:151-537) Galactose oxidase, central do | 8e-06 | |
| d1k3ia3 | 387 | b.69.1.1 (A:151-537) Galactose oxidase, central do | 1e-04 | |
| d1k3ia3 | 387 | b.69.1.1 (A:151-537) Galactose oxidase, central do | 7e-04 | |
| d1k3ia3 | 387 | b.69.1.1 (A:151-537) Galactose oxidase, central do | 9e-04 | |
| d1k3ia3 | 387 | b.69.1.1 (A:151-537) Galactose oxidase, central do | 0.001 | |
| d1k3ia3 | 387 | b.69.1.1 (A:151-537) Galactose oxidase, central do | 0.001 |
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 76.5 bits (186), Expect = 6e-16
Identities = 43/266 (16%), Positives = 82/266 (30%), Gaps = 16/266 (6%)
Query: 25 PPERWGHSACYSHGAVYIFGGCCGGLHFGDVL-MLNLDTMVWSTLATTGQGPGPRDSHSA 83
R G + C G +Y GG L+ + + + PR+
Sbjct: 38 QVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGV 97
Query: 84 ILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVI 143
+ + GG++G N + + E EW + +
Sbjct: 98 GVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL----NRLLYA 153
Query: 144 FGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQ 203
GG N LN + W + R V+ N ++ GG G
Sbjct: 154 VGG--FDGTNRLNSAECYYPERNEWRMI---TAMNTIRSGAGVCVLHNCIYAAGGYDGQD 208
Query: 204 YHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNV 263
++ D+ + TW+ + R+ ++Y++GG + + + +
Sbjct: 209 QLNSVERYDVETETWTF---VAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDP 265
Query: 264 STCSWSQLDTCGQQPQGRFSHAAVVT 289
T +WS++ + GR VT
Sbjct: 266 DTDTWSEV---TRMTSGRSGVGVAVT 288
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.4 bits (121), Expect = 1e-07
Identities = 33/215 (15%), Positives = 56/215 (26%), Gaps = 10/215 (4%)
Query: 139 DKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGG 198
+ GG L+ L + W A D+ VPR + V+ L+ GG
Sbjct: 5 RLIYTAGGYFR---QSLSYLEAYNPSNGTWLRLA---DLQVPRSGLAGCVVGGLLYAVGG 58
Query: 199 DCGDQY-HGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYND 257
+ D LD + ++ + R I +Y +GG ++N
Sbjct: 59 RNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNS 118
Query: 258 IWILNVSTCSWSQLDTCGQQPQGRFSHAAVVTGSDIVIYGGCGEDERPLNELLVLQLGAE 317
+ W R V + GG R + E
Sbjct: 119 VERYEPERDEWH---LVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNE 175
Query: 318 HPNYRYNISMCKIFGNHWNQAKRRFPGGVENNSKT 352
++ G GG + +
Sbjct: 176 WRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQL 210
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.9 bits (117), Expect = 4e-07
Identities = 21/112 (18%), Positives = 38/112 (33%), Gaps = 6/112 (5%)
Query: 23 FNPPERWGHSACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHS 82
R G C H +Y GG G V +++T W+ +A R +
Sbjct: 181 AMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKH---RRSALG 237
Query: 83 AILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTAT 134
+ ++ V GG +G+ ++ + D ++ W S R
Sbjct: 238 ITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTW---SEVTRMTSGRSGVGVA 286
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.0 bits (112), Expect = 2e-06
Identities = 17/100 (17%), Positives = 28/100 (28%), Gaps = 4/100 (4%)
Query: 238 NIGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVTGSDIVIYG 297
+G +Y GG + + + N S +W +L R A V G + G
Sbjct: 2 KVGRLIYTAGGY-FRQSLSYLEAYNPSNGTWLRL---ADLQVPRSGLAGCVVGGLLYAVG 57
Query: 298 GCGEDERPLNELLVLQLGAEHPNYRYNISMCKIFGNHWNQ 337
G + L N + + N
Sbjct: 58 GRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGV 97
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Score = 46.3 bits (108), Expect = 8e-06
Identities = 33/313 (10%), Positives = 64/313 (20%), Gaps = 36/313 (11%)
Query: 25 PPERWGHSACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAI 84
+ + + G + + + W G S + +
Sbjct: 73 KHDMFCPGISMDGNGQIVVTGGNDAKK---TSLYDSSSDSWIPGPDMQVARG-YQSSATM 128
Query: 85 LWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIF 144
G + G +G + + SK W P D+ +F
Sbjct: 129 SDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLF 188
Query: 145 ---GGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNV------------- 188
GS + S G R +
Sbjct: 189 GWKKGSVFQAGPSTAMNWYYTSGSGDVKSA---GKRQSNRGVAPDAMCGNAVMYDAVKGK 245
Query: 189 --IANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYII 246
Y I + + + + A G + + +I
Sbjct: 246 ILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFIT 305
Query: 247 GGVGDKHYYND------IWILNVSTCSWSQLDTCGQQPQGRFSHAAVVTGSD--IVIYGG 298
GG + D I ++ + R H+ + D + GG
Sbjct: 306 GGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQ---NPNSIVRVYHSISLLLPDGRVFNGGG 362
Query: 299 CGEDERPLNELLV 311
+ N
Sbjct: 363 GLCGDCTTNHFDA 375
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Score = 42.5 bits (98), Expect = 1e-04
Identities = 23/154 (14%), Positives = 34/154 (22%), Gaps = 16/154 (10%)
Query: 217 TWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGV------GDKHYYNDIWILNVSTCSWSQ 270
W P V A A +V + G + ST S
Sbjct: 10 RWGPTI---DLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSD 66
Query: 271 LDTCGQQPQGRFSHAAVVTGSDIVIYGGCGEDERPLNEL-----LVLQLGAEHPNYRYNI 325
T F + G + I G D + + + Y
Sbjct: 67 R-TVTVTKHDMFCPGISMDG-NGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQS 124
Query: 326 SMCKIFGNHWNQAKRRFPGGVENNSKTIFPGNNE 359
S G + G E N + P +
Sbjct: 125 SATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 158
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Score = 40.2 bits (92), Expect = 7e-04
Identities = 20/131 (15%), Positives = 45/131 (34%), Gaps = 14/131 (10%)
Query: 167 RWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQYHGD------IDMLDMNSLTWSR 220
RW D+P+ + + + R+ ++ D + G D ++ S
Sbjct: 10 RWGPTI---DLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSD 66
Query: 221 LAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLDTCGQQPQG 280
+ + + +++ ++ + GG K + + S+ SW Q +G
Sbjct: 67 RTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKK----TSLYDSSSDSWIPGPDM-QVARG 121
Query: 281 RFSHAAVVTGS 291
S A + G
Sbjct: 122 YQSSATMSDGR 132
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Score = 39.8 bits (91), Expect = 9e-04
Identities = 15/89 (16%), Positives = 25/89 (28%), Gaps = 11/89 (12%)
Query: 15 WLYPKVLGFNPPERWGHSACYSHGAVYIFGGCCGGLHFGD------VLMLNLDTMVWSTL 68
G + S G+ +I GG G+ F D + + +
Sbjct: 277 NTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQ 336
Query: 69 ATTGQGPGPRDSHSA--ILWGHKMIVFGG 95
R HS +L ++ GG
Sbjct: 337 NPN---SIVRVYHSISLLLPDGRVFNGGG 362
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Score = 39.4 bits (90), Expect = 0.001
Identities = 18/171 (10%), Positives = 43/171 (25%), Gaps = 11/171 (6%)
Query: 123 APPSPRESHTATLVGDDKMVIFGGSG----EGEANYLNDLHVLDLKTMRWASPAVKGDIP 178
+ A +++++ G + D T +
Sbjct: 15 IDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRT---VTV 71
Query: 179 VPRDSH-SSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAI 237
D + + D + D +S +W + + G A +
Sbjct: 72 TKHDMFCPGISMDGNGQIVVTGGNDAKK--TSLYDSSSDSWIPGPDMQVARG-YQSSATM 128
Query: 238 NIGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVV 288
+ G I G + + + + S+ +W+ L P +
Sbjct: 129 SDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLY 179
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Score = 39.4 bits (90), Expect = 0.001
Identities = 24/248 (9%), Positives = 58/248 (23%), Gaps = 26/248 (10%)
Query: 65 WSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLH------ILDLESKEWMRP 118
W P + + +++++ D +
Sbjct: 11 WGPTID---LPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSD- 66
Query: 119 ECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIP 178
R + + + D I G + D + W
Sbjct: 67 --RTVTVTKHDMFCPGISMDGNGQIVVTGGNDA----KKTSLYDSSSDSWIPGPDMQVAR 120
Query: 179 VPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAIN 238
S ++ + G G + + ++ +S TW+ L +P + A +
Sbjct: 121 G-YQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLY 179
Query: 239 IGTKVYIIGGVGDKHYY------NDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVTGSD 292
+ G + W + G++ R + G+
Sbjct: 180 RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSA---GKRQSNRGVAPDAMCGNA 236
Query: 293 IVIYGGCG 300
++ G
Sbjct: 237 VMYDAVKG 244
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 650 | |||
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 100.0 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 100.0 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 99.96 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 99.89 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 95.74 | |
| d1pexa_ | 192 | Collagenase-3 (MMP-13), C-terminal domain {Human ( | 95.07 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 95.07 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 94.94 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 94.81 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 94.71 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 94.63 | |
| d1itva_ | 195 | Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: | 94.43 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 94.31 | |
| d1su3a2 | 195 | Collagenase (MMP1), C-terminal domain {Human (Homo | 93.83 | |
| d1pexa_ | 192 | Collagenase-3 (MMP-13), C-terminal domain {Human ( | 93.78 | |
| d1su3a2 | 195 | Collagenase (MMP1), C-terminal domain {Human (Homo | 93.44 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 93.4 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 93.39 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 92.85 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 92.49 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 92.13 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 92.08 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 92.02 | |
| d1itva_ | 195 | Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: | 91.53 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 91.33 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 90.96 | |
| d1gena_ | 200 | Gelatinase A (MMP-2), C-terminal domain {Human (Ho | 90.72 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 90.34 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 90.08 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 89.81 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 89.39 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 88.53 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 87.41 | |
| d1qhua1 | 192 | Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: | 86.53 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 85.6 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 84.71 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 82.61 | |
| d1hxna_ | 210 | Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: | 82.11 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 82.07 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 81.67 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 80.78 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 80.33 |
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.1e-36 Score=305.91 Aligned_cols=259 Identities=18% Similarity=0.273 Sum_probs=233.0
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCC----CcCcCeEEEEECCC
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNG----YKKVNDLHILDLES 112 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~----~~~~ndv~~yD~~t 112 (650)
++.||||||+.. ...+++++||+.+++|+.++.+ |.+|++|++++++++|||+||.+. ...++++|+||+.+
T Consensus 4 g~~iyv~GG~~~-~~~~~~~~yd~~t~~W~~~~~~---p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~ 79 (288)
T d1zgka1 4 GRLIYTAGGYFR-QSLSYLEAYNPSNGTWLRLADL---QVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMT 79 (288)
T ss_dssp CCCEEEECCBSS-SBCCCEEEEETTTTEEEECCCC---SSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTT
T ss_pred CCEEEEECCcCC-CCCceEEEEECCCCeEEECCCC---CCccceeEEEEECCEEEEEeCcccCCCCccccchhhhccccc
Confidence 578999999864 5679999999999999999766 889999999999999999999753 33478999999999
Q ss_pred CcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeeecCE
Q 006334 113 KEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANR 192 (650)
Q Consensus 113 ~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~~~~ 192 (650)
++|+++ ..+|.+|.+|+++++ +++||++||.. ....++++++||+.++.|.... .++.+|..|+++.++++
T Consensus 80 ~~w~~~---~~~p~~r~~~~~~~~-~~~i~~~gg~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~r~~~~~~~~~~~ 150 (288)
T d1zgka1 80 NQWSPC---APMSVPRNRIGVGVI-DGHIYAVGGSH--GCIHHNSVERYEPERDEWHLVA---PMLTRRIGVGVAVLNRL 150 (288)
T ss_dssp TEEEEC---CCCSSCCBTCEEEEE-TTEEEEECCEE--TTEECCCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTE
T ss_pred cccccc---ccccceecceecccc-ceeeEEeccee--cccccceeeeeccccCcccccc---ccccccccceeeeeeec
Confidence 999997 678999999999988 69999999985 3567899999999999999766 78889999999999999
Q ss_pred EEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCcEEEee
Q 006334 193 LFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLD 272 (650)
Q Consensus 193 Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~ 272 (650)
+|++||.......++++.||+.+++|.... ..+..+..++++..+++|+++||......+++++.||+.+++|..+.
T Consensus 151 ~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~ 227 (288)
T d1zgka1 151 LYAVGGFDGTNRLNSAECYYPERNEWRMIT---AMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVA 227 (288)
T ss_dssp EEEECCBCSSCBCCCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECC
T ss_pred ceEecCcccccccceEEEeecccccccccc---ccccccccccccceeeeEEEecCccccccccceeeeeecceeeeccc
Confidence 999999988888899999999999999987 67778999999999999999999998888999999999999999986
Q ss_pred cCCCCCCCcceeEEEEECCeEEEEcCCCCCCCCCCcEEEEecC
Q 006334 273 TCGQQPQGRFSHAAVVTGSDIVIYGGCGEDERPLNELLVLQLG 315 (650)
Q Consensus 273 ~~~~~p~~R~~hsav~~~~~lyV~GG~~~~~~~~~d~~~l~l~ 315 (650)
. .|.+|.+|++++++++||||||.+. ....+++++||+.
T Consensus 228 ~---~p~~r~~~~~~~~~~~l~v~GG~~~-~~~~~~v~~yd~~ 266 (288)
T d1zgka1 228 P---MKHRRSALGITVHQGRIYVLGGYDG-HTFLDSVECYDPD 266 (288)
T ss_dssp C---CSSCCBSCEEEEETTEEEEECCBCS-SCBCCEEEEEETT
T ss_pred C---ccCcccceEEEEECCEEEEEecCCC-CeecceEEEEECC
Confidence 4 7889999999999999999999753 4577889999987
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-35 Score=302.68 Aligned_cols=262 Identities=19% Similarity=0.303 Sum_probs=236.3
Q ss_pred CCCCcCCCeEEeeecCCCCCCCcceeEEEEECCEEEEEccCCC----CcccceEEEEECCCCcEEEeecCCCCCCCCcce
Q 006334 6 GENAKRAAMWLYPKVLGFNPPERWGHSACYSHGAVYIFGGCCG----GLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSH 81 (650)
Q Consensus 6 ~~~~~~~~~W~~~~~~g~~P~~R~ghs~v~~~~~IyvfGG~~~----~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~h 81 (650)
..++..+..|.++ +..|.+|.+|++++++++|||+||... ...++++|+||+.+++|+.++.+ |.+|+.|
T Consensus 22 ~~yd~~t~~W~~~---~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~---p~~r~~~ 95 (288)
T d1zgka1 22 EAYNPSNGTWLRL---ADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPM---SVPRNRI 95 (288)
T ss_dssp EEEETTTTEEEEC---CCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCC---SSCCBTC
T ss_pred EEEECCCCeEEEC---CCCCCccceeEEEEECCEEEEEeCcccCCCCccccchhhhcccccccccccccc---cceecce
Confidence 3567888999965 357889999999999999999999742 35578999999999999998876 7899999
Q ss_pred EEEEECCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEE
Q 006334 82 SAILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVL 161 (650)
Q Consensus 82 sa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~y 161 (650)
++++++++||++||..+...+++.+.||+.++.|... ...+.+|..|+++.. ++++|++||... ....+++++|
T Consensus 96 ~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~r~~~~~~~~-~~~~~~~GG~~~--~~~~~~~~~~ 169 (288)
T d1zgka1 96 GVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLV---APMLTRRIGVGVAVL-NRLLYAVGGFDG--TNRLNSAECY 169 (288)
T ss_dssp EEEEETTEEEEECCEETTEECCCEEEEETTTTEEEEC---CCCSSCCBSCEEEEE-TTEEEEECCBCS--SCBCCCEEEE
T ss_pred eccccceeeEEecceecccccceeeeeccccCccccc---cccccccccceeeee-eecceEecCccc--ccccceEEEe
Confidence 9999999999999998888899999999999999886 567888999999887 699999999853 4567889999
Q ss_pred ecCCCceeeccccCCCCCCCCcceeeeecCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECC
Q 006334 162 DLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGT 241 (650)
Q Consensus 162 d~~t~~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~ 241 (650)
|+.+++|.... ..+..+..++++..+++||++||.+.....++.++||..+++|+.++ +.|.+|..|+++.+++
T Consensus 170 d~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~---~~p~~r~~~~~~~~~~ 243 (288)
T d1zgka1 170 YPERNEWRMIT---AMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVA---PMKHRRSALGITVHQG 243 (288)
T ss_dssp ETTTTEEEECC---CCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECC---CCSSCCBSCEEEEETT
T ss_pred ecccccccccc---ccccccccccccceeeeEEEecCccccccccceeeeeecceeeeccc---CccCcccceEEEEECC
Confidence 99999999876 77788999999999999999999988889999999999999999987 7889999999999999
Q ss_pred EEEEEeccCCCcccCeEEEEECCCCcEEEeecCCCCCCCcceeEEEE
Q 006334 242 KVYIIGGVGDKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVV 288 (650)
Q Consensus 242 ~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~~~~~~p~~R~~hsav~ 288 (650)
+|||+||.+....++++|+||+++++|+.+.. +|.+|.+|++++
T Consensus 244 ~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~---~p~~R~~~~~~~ 287 (288)
T d1zgka1 244 RIYVLGGYDGHTFLDSVECYDPDTDTWSEVTR---MTSGRSGVGVAV 287 (288)
T ss_dssp EEEEECCBCSSCBCCEEEEEETTTTEEEEEEE---CSSCCBSCEEEE
T ss_pred EEEEEecCCCCeecceEEEEECCCCEEEECCC---CCCCcEeEEEEE
Confidence 99999999988899999999999999999975 799999999886
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=99.96 E-value=5.1e-29 Score=263.46 Aligned_cols=288 Identities=13% Similarity=0.092 Sum_probs=204.3
Q ss_pred CcCCCeEEeeecCCCCCCCcceeEEEEECCEEEEEccCCCC------cccceEEEEECCCCcEEEeecCCCCCCCCcceE
Q 006334 9 AKRAAMWLYPKVLGFNPPERWGHSACYSHGAVYIFGGCCGG------LHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHS 82 (650)
Q Consensus 9 ~~~~~~W~~~~~~g~~P~~R~ghs~v~~~~~IyvfGG~~~~------~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hs 82 (650)
.+..++|.... ..|..|..++++..+++||+|||+... ..+..+++||+.+++|..++.+.. |..+++++
T Consensus 5 ~p~~g~W~~~~---~~p~~~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~-~~~~~~~~ 80 (387)
T d1k3ia3 5 QPGLGRWGPTI---DLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVT-KHDMFCPG 80 (387)
T ss_dssp CTTSCEEEEEE---ECSSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEEC-SCCCSSCE
T ss_pred CCCCCccCCcC---CCCccccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCC-CcccceeE
Confidence 36789999532 234555555666668999999998532 234468899999999988766532 44455555
Q ss_pred EEEE-CCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEE
Q 006334 83 AILW-GHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVL 161 (650)
Q Consensus 83 a~~~-~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~y 161 (650)
+++. +++||++||.+. +++++||+.+++|+.+ ..++.+|.+|+++++.++++|++||... ....++++++|
T Consensus 81 ~~~~~~g~i~v~Gg~~~----~~~~~yd~~~~~w~~~---~~~~~~r~~~~~~~~~dG~v~v~GG~~~-~~~~~~~v~~y 152 (387)
T d1k3ia3 81 ISMDGNGQIVVTGGNDA----KKTSLYDSSSDSWIPG---PDMQVARGYQSSATMSDGRVFTIGGSWS-GGVFEKNGEVY 152 (387)
T ss_dssp EEECTTSCEEEECSSST----TCEEEEEGGGTEEEEC---CCCSSCCSSCEEEECTTSCEEEECCCCC-SSSCCCCEEEE
T ss_pred EEEecCCcEEEeecCCC----cceeEecCccCccccc---ccccccccccceeeecCCceeeeccccc-cccccceeeee
Confidence 5544 789999998754 6789999999999986 6889999999999998899999999843 45678999999
Q ss_pred ecCCCceeeccccCCC------------------------------------------------------------CCCC
Q 006334 162 DLKTMRWASPAVKGDI------------------------------------------------------------PVPR 181 (650)
Q Consensus 162 d~~t~~Wt~i~~~~~l------------------------------------------------------------P~~R 181 (650)
|+.+++|+.+...... +..+
T Consensus 153 d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (387)
T d1k3ia3 153 SPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAM 232 (387)
T ss_dssp ETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCB
T ss_pred cCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccc
Confidence 9999999875421100 0011
Q ss_pred Ccceeee--ecCEEEEEeccCCCC---ccCeEEEEE-----CCCCcEEEeeecCCCCCcccceEEEEE-CCEEEEEeccC
Q 006334 182 DSHSSNV--IANRLFVYGGDCGDQ---YHGDIDMLD-----MNSLTWSRLAIIGSSPGVRAGHAAINI-GTKVYIIGGVG 250 (650)
Q Consensus 182 ~~hs~v~--~~~~Iyv~GG~~~~~---~~n~v~~yd-----~~t~~W~~i~~~g~~P~~R~~~s~v~~-~~~IyI~GG~~ 250 (650)
..++++. .++++|++||..... .....+.++ .....|..+. .+|.+|..|+++++ +++|||+||..
T Consensus 233 ~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~p~~r~~~~~~~~~dg~i~v~GG~~ 309 (387)
T d1k3ia3 233 CGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASN---GLYFARTFHTSVVLPDGSTFITGGQR 309 (387)
T ss_dssp TCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTT---CCSSCCBSCEEEECTTSCEEEECCBS
T ss_pred cccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeecc---ccccccccceeeeccCCeEEEECCcc
Confidence 1111111 247899999964322 122233333 2334455544 78899999999887 56999999975
Q ss_pred C------CcccCeEEEEECCCCcEEEeecCCCCCCCcceeEEEEE--CCeEEEEcCCCCCCC--CCCcEEEEec
Q 006334 251 D------KHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVT--GSDIVIYGGCGEDER--PLNELLVLQL 314 (650)
Q Consensus 251 ~------~~~~~dv~~yD~~t~~W~~l~~~~~~p~~R~~hsav~~--~~~lyV~GG~~~~~~--~~~d~~~l~l 314 (650)
. ......+++||+++++|+.+.. ++.+|++|+++++ +++|||+||....+. ...++.+|+.
T Consensus 310 ~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~---~~~~R~~Hs~a~l~~dG~v~v~GG~~~~~~~~~~~~~e~y~P 380 (387)
T d1k3ia3 310 RGIPFEDSTPVFTPEIYVPEQDTFYKQNP---NSIVRVYHSISLLLPDGRVFNGGGGLCGDCTTNHFDAQIFTP 380 (387)
T ss_dssp BCCTTCCCSBCCCCEEEEGGGTEEEECCC---CSSCCCTTEEEEECTTSCEEEEECCCCTTCSCCCCEEEEEEC
T ss_pred cCccCCCCcEeceEEEEECCCCeEEECCC---CCCcccceEEEEECCCCEEEEEeCCCcCCCCcccceEEEEcc
Confidence 2 3455678999999999999964 7889999998776 789999999643332 3345555553
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=99.89 E-value=1.3e-22 Score=213.67 Aligned_cols=244 Identities=14% Similarity=0.144 Sum_probs=173.6
Q ss_pred CCCcCCCeEEeeecCCCCCCCcceeEEEE-ECCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEE
Q 006334 7 ENAKRAAMWLYPKVLGFNPPERWGHSACY-SHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAIL 85 (650)
Q Consensus 7 ~~~~~~~~W~~~~~~g~~P~~R~ghs~v~-~~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~ 85 (650)
.+++.++.|..... ...|..+..++.++ .+++||++||.+. +++++||+.+++|..++.+ |.+|..|++++
T Consensus 56 ~yd~~t~~w~~~~~-~~~~~~~~~~~~~~~~~g~i~v~Gg~~~----~~~~~yd~~~~~w~~~~~~---~~~r~~~~~~~ 127 (387)
T d1k3ia3 56 SWDPSTGIVSDRTV-TVTKHDMFCPGISMDGNGQIVVTGGNDA----KKTSLYDSSSDSWIPGPDM---QVARGYQSSAT 127 (387)
T ss_dssp EECTTTCCBCCCEE-EECSCCCSSCEEEECTTSCEEEECSSST----TCEEEEEGGGTEEEECCCC---SSCCSSCEEEE
T ss_pred EEECCCCcEeecCC-CCCCcccceeEEEEecCCcEEEeecCCC----cceeEecCccCcccccccc---cccccccceee
Confidence 47788888975432 22344455555444 5689999999653 5789999999999998776 78899998888
Q ss_pred E-CCEEEEEcccCCC-cCcCeEEEEECCCCcEEeeecCCCC---------------------------------------
Q 006334 86 W-GHKMIVFGGTNGY-KKVNDLHILDLESKEWMRPECRGAP--------------------------------------- 124 (650)
Q Consensus 86 ~-~~~lyVfGG~~~~-~~~ndv~~yD~~t~~W~~l~~~~~~--------------------------------------- 124 (650)
+ +++||++||.... ...+++++||+.+++|+.+......
T Consensus 128 ~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~ 207 (387)
T d1k3ia3 128 MSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWY 207 (387)
T ss_dssp CTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEE
T ss_pred ecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEe
Confidence 7 6899999997544 4578999999999999876321100
Q ss_pred ---------------------CCCCcccEEEEE-cCCEEEEEccccCCCCc-ccceEEEE-----ecCCCceeeccccCC
Q 006334 125 ---------------------PSPRESHTATLV-GDDKMVIFGGSGEGEAN-YLNDLHVL-----DLKTMRWASPAVKGD 176 (650)
Q Consensus 125 ---------------------P~~R~~hs~~~~-~~~~Lyv~GG~~~~~~~-~~~dv~~y-----d~~t~~Wt~i~~~~~ 176 (650)
+.++..+++... .++++|++||....... .......+ +.....|+.+. .
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 284 (387)
T d1k3ia3 208 YTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASN---G 284 (387)
T ss_dssp ECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTT---C
T ss_pred cCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeecc---c
Confidence 111111222221 35889999997542221 11222222 33445676655 8
Q ss_pred CCCCCCcceeeee-cCEEEEEeccC------CCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEE--CCEEEEEe
Q 006334 177 IPVPRDSHSSNVI-ANRLFVYGGDC------GDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINI--GTKVYIIG 247 (650)
Q Consensus 177 lP~~R~~hs~v~~-~~~Iyv~GG~~------~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~--~~~IyI~G 247 (650)
+|.+|..|+++++ +++||++||.. .....+++++||+.+++|+.++ +++.+|..|+++++ +++|||+|
T Consensus 285 ~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~---~~~~~R~~Hs~a~l~~dG~v~v~G 361 (387)
T d1k3ia3 285 LYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQN---PNSIVRVYHSISLLLPDGRVFNGG 361 (387)
T ss_dssp CSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECC---CCSSCCCTTEEEEECTTSCEEEEE
T ss_pred cccccccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEECC---CCCCcccceEEEEECCCCEEEEEe
Confidence 9999999999887 67999999964 2345678999999999999997 78899999988776 78999999
Q ss_pred ccCC---CcccCeEEEEECC
Q 006334 248 GVGD---KHYYNDIWILNVS 264 (650)
Q Consensus 248 G~~~---~~~~~dv~~yD~~ 264 (650)
|... .....++++||+.
T Consensus 362 G~~~~~~~~~~~~~e~y~Pp 381 (387)
T d1k3ia3 362 GGLCGDCTTNHFDAQIFTPN 381 (387)
T ss_dssp CCCCTTCSCCCCEEEEEECG
T ss_pred CCCcCCCCcccceEEEEcch
Confidence 9632 2245679999873
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.74 E-value=0.83 Score=43.82 Aligned_cols=218 Identities=10% Similarity=0.048 Sum_probs=110.4
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEECCCCcEE
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESKEWM 116 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~ 116 (650)
++.||..-- ....+++||+.++.-...... . +-...+..-++.++|... +.+++||+.+.+++
T Consensus 29 ~~~l~wvDi-----~~~~I~r~d~~~g~~~~~~~~----~-~~~~i~~~~dg~l~va~~-------~gl~~~d~~tg~~~ 91 (295)
T d2ghsa1 29 SGTAWWFNI-----LERELHELHLASGRKTVHALP----F-MGSALAKISDSKQLIASD-------DGLFLRDTATGVLT 91 (295)
T ss_dssp TTEEEEEEG-----GGTEEEEEETTTTEEEEEECS----S-CEEEEEEEETTEEEEEET-------TEEEEEETTTCCEE
T ss_pred CCEEEEEEC-----CCCEEEEEECCCCeEEEEECC----C-CcEEEEEecCCCEEEEEe-------CccEEeecccceee
Confidence 467776422 235799999998876544321 1 222333345778887432 46999999999988
Q ss_pred eeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee--cCEEE
Q 006334 117 RPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI--ANRLF 194 (650)
Q Consensus 117 ~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~--~~~Iy 194 (650)
.+..............+++..++.||+---. . .........|.+..++.+.+.. .+. .. ...+.. ++.+|
T Consensus 92 ~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~-~--~~~~~~g~l~~~~~g~~~~~~~--~~~--~~-Ng~~~s~d~~~l~ 163 (295)
T d2ghsa1 92 LHAELESDLPGNRSNDGRMHPSGALWIGTMG-R--KAETGAGSIYHVAKGKVTKLFA--DIS--IP-NSICFSPDGTTGY 163 (295)
T ss_dssp EEECSSTTCTTEEEEEEEECTTSCEEEEEEE-T--TCCTTCEEEEEEETTEEEEEEE--EES--SE-EEEEECTTSCEEE
T ss_pred EEeeeecCCCcccceeeEECCCCCEEEEecc-c--cccccceeEeeecCCcEEEEee--ccC--Cc-ceeeecCCCceEE
Confidence 7632111111112233444456777764322 1 1122334455555666554331 111 11 122222 34566
Q ss_pred EEeccCCCCccCeEEEEECCCC-------cEEEeeecCCCCCcccc-eEEEE-ECCEEEEEeccCCCcccCeEEEEECCC
Q 006334 195 VYGGDCGDQYHGDIDMLDMNSL-------TWSRLAIIGSSPGVRAG-HAAIN-IGTKVYIIGGVGDKHYYNDIWILNVST 265 (650)
Q Consensus 195 v~GG~~~~~~~n~v~~yd~~t~-------~W~~i~~~g~~P~~R~~-~s~v~-~~~~IyI~GG~~~~~~~~dv~~yD~~t 265 (650)
+..- ..+.+++|+.+.. .+..+. .+..... ..+++ .++.||+..= . -..|++||++.
T Consensus 164 ~~dt-----~~~~I~~~~~d~~~~~~~~~~~~~~~----~~~~~g~pdG~~vD~~GnlWva~~-~----~g~V~~~dp~G 229 (295)
T d2ghsa1 164 FVDT-----KVNRLMRVPLDARTGLPTGKAEVFID----STGIKGGMDGSVCDAEGHIWNARW-G----EGAVDRYDTDG 229 (295)
T ss_dssp EEET-----TTCEEEEEEBCTTTCCBSSCCEEEEE----CTTSSSEEEEEEECTTSCEEEEEE-T----TTEEEEECTTC
T ss_pred Eeec-----ccceeeEeeecccccccccceEEEec----cCcccccccceEEcCCCCEEeeee-C----CCceEEecCCC
Confidence 6532 2367888876422 122222 1111112 23333 3467888721 1 13699999998
Q ss_pred CcEEEeecCCCCCCCcceeEEEEEC---CeEEEEcC
Q 006334 266 CSWSQLDTCGQQPQGRFSHAAVVTG---SDIVIYGG 298 (650)
Q Consensus 266 ~~W~~l~~~~~~p~~R~~hsav~~~---~~lyV~GG 298 (650)
.....+. +|..+. -++++-+ +.|||.-.
T Consensus 230 ~~~~~i~----lP~~~~-T~~~FGG~d~~~LyvTta 260 (295)
T d2ghsa1 230 NHIARYE----VPGKQT-TCPAFIGPDASRLLVTSA 260 (295)
T ss_dssp CEEEEEE----CSCSBE-EEEEEESTTSCEEEEEEB
T ss_pred cEeeEec----CCCCce-EEEEEeCCCCCEEEEEEC
Confidence 8888886 344332 2233322 45777643
|
| >d1pexa_ b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Collagenase-3 (MMP-13), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.07 E-value=0.7 Score=41.84 Aligned_cols=154 Identities=13% Similarity=0.047 Sum_probs=86.2
Q ss_pred EEEEECCEEEEEccCCCCcccceEEEEECCCCcEEEeecC---CCCCCCCcceEEEEE--CCEEEEEcccCCCcCcCeEE
Q 006334 32 SACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATT---GQGPGPRDSHSAILW--GHKMIVFGGTNGYKKVNDLH 106 (650)
Q Consensus 32 s~v~~~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~---g~~P~pR~~hsa~~~--~~~lyVfGG~~~~~~~ndv~ 106 (650)
+++.+++.+|+|=| +.+|+++.....+...... ...|.. -. ++... ++++|+|-| +.+|
T Consensus 13 Av~~~~g~~y~Fkg-------~~~wr~~~~~~~~~p~~i~~~w~~lp~~-ID-AAf~~~~~~~~yffkg-------~~~w 76 (192)
T d1pexa_ 13 AITSLRGETMIFKD-------RFFWRLHPQQVDAELFLTKSFWPELPNR-ID-AAYEHPSHDLIFIFRG-------RKFW 76 (192)
T ss_dssp EEEEETTEEEEEET-------TEEEEECSSSSCCEEEEHHHHCTTSCSS-CC-EEEEETTTTEEEEEET-------TEEE
T ss_pred EEEEcCCeEEEEEC-------CEEEEEcCCCCCCcccchhhhCcCCCCc-cc-ceEEEcCCCEEEEEcC-------CEEE
Confidence 56678999999987 3678877665555443321 122222 12 22222 688998887 4688
Q ss_pred EEECCCCcE---EeeecCCCCCC-CCcccEEEEE-cCCEEEEEccccCCCCcccceEEEEecCCCceee-----ccc-cC
Q 006334 107 ILDLESKEW---MRPECRGAPPS-PRESHTATLV-GDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWAS-----PAV-KG 175 (650)
Q Consensus 107 ~yD~~t~~W---~~l~~~~~~P~-~R~~hs~~~~-~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~-----i~~-~~ 175 (650)
+|+-.+..+ +.+... ..|. ...--++... .++++|+|-|. ..|+||..++.-.. +.. -.
T Consensus 77 ~y~~~~~~~gyPk~i~~~-~~~~~~~~idaA~~~~~~~~~y~Fkg~---------~y~~y~~~~~~~~~~~pk~I~~~w~ 146 (192)
T d1pexa_ 77 ALNGYDILEGYPKKISEL-GLPKEVKKISAAVHFEDTGKTLLFSGN---------QVWRYDDTNHIMDKDYPRLIEEDFP 146 (192)
T ss_dssp EESTTCCCTTCSEESTTT-TCCTTCCCCCEEEECTTTSEEEEEETT---------EEEEEETTTTEECSSCCCBHHHHST
T ss_pred EEcCCcccCCCCeEeeee-ecCCCCCCccEEEEECCCCEEEEEeCC---------EEEEEcCccccccCCCcEEHhhcCC
Confidence 887544332 122111 1111 1112233333 36899999764 37889876553221 110 01
Q ss_pred CCCCCCCcceeeeecCEEEEEeccCCCCccCeEEEEECCCCcEEE
Q 006334 176 DIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSR 220 (650)
Q Consensus 176 ~lP~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~ 220 (650)
.+|.. -.++...++++|+|-| +..++||..+.+-..
T Consensus 147 gvp~~--vdAa~~~~g~~YfF~g-------~~y~r~~~~~~~v~~ 182 (192)
T d1pexa_ 147 GIGDK--VDAVYEKNGYIYFFNG-------PIQFEYSIWSNRIVR 182 (192)
T ss_dssp TSCSC--CSEEEEETTEEEEEET-------TEEEEEETTTTEEEE
T ss_pred CCCCC--ceEEEEeCCEEEEEEC-------CEEEEEeCCcCeEcc
Confidence 23322 2244456899999988 688999988776544
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.07 E-value=1.3 Score=40.89 Aligned_cols=157 Identities=12% Similarity=0.198 Sum_probs=79.8
Q ss_pred EEEECCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEe
Q 006334 83 AILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLD 162 (650)
Q Consensus 83 a~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd 162 (650)
....++..++.|+.++ .+..||+.+.+-...... .. ... ..... ++.+++.|+.+ ..+.+||
T Consensus 182 ~~~~~~~~l~s~~~dg-----~i~~~d~~~~~~~~~~~~--~~--~~v-~~~~~-~~~~l~s~s~d-------~~i~iwd 243 (342)
T d2ovrb2 182 SLQFDGIHVVSGSLDT-----SIRVWDVETGNCIHTLTG--HQ--SLT-SGMEL-KDNILVSGNAD-------STVKIWD 243 (342)
T ss_dssp EEEECSSEEEEEETTS-----CEEEEETTTCCEEEEECC--CC--SCE-EEEEE-ETTEEEEEETT-------SCEEEEE
T ss_pred cccCCCCEEEEEeCCC-----eEEEeecccceeeeEecc--cc--cce-eEEec-CCCEEEEEcCC-------CEEEEEe
Confidence 3444666677777654 578888887764432111 11 111 22223 34566667653 3588888
Q ss_pred cCCCceeeccccCCCCCCCCcceeeeecCEEEEEeccCCCCccCeEEEEECCCCcEE-EeeecCCCCCccc-ceEEEEEC
Q 006334 163 LKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWS-RLAIIGSSPGVRA-GHAAINIG 240 (650)
Q Consensus 163 ~~t~~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~-~i~~~g~~P~~R~-~~s~v~~~ 240 (650)
....+-...- ...........++..++.+++.|+.+ ..+.+||+.+++.. .+... ..+.... -.+++...
T Consensus 244 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~s~D-----g~i~iwd~~tg~~i~~~~~~-~~~~~~~~v~~v~~s~ 315 (342)
T d2ovrb2 244 IKTGQCLQTL--QGPNKHQSAVTCLQFNKNFVITSSDD-----GTVKLWDLKTGEFIRNLVTL-ESGGSGGVVWRIRASN 315 (342)
T ss_dssp TTTCCEEEEE--CSTTSCSSCEEEEEECSSEEEEEETT-----SEEEEEETTTCCEEEEEEEC-TTGGGTCEEEEEEECS
T ss_pred cccccccccc--cccceeeeceeecccCCCeeEEEcCC-----CEEEEEECCCCCEEEEEecc-cCCCCCCCEEEEEECC
Confidence 8765443211 01111222233344566677777755 47899999887653 23211 1111111 12233334
Q ss_pred CEEEEEeccCCCcccCeEEEEECCC
Q 006334 241 TKVYIIGGVGDKHYYNDIWILNVST 265 (650)
Q Consensus 241 ~~IyI~GG~~~~~~~~dv~~yD~~t 265 (650)
+..+++.|..++.....++++|+..
T Consensus 316 ~~~~la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 316 TKLVCAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp SEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CCCEEEEEeCCCCCeeEEEEEeCCC
Confidence 4444444444444445688888764
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=94.94 E-value=1.3 Score=42.74 Aligned_cols=244 Identities=10% Similarity=0.046 Sum_probs=121.2
Q ss_pred CCEEEEEccCC--CCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE--CCEEEEEcccCCCcCcCeEEEEECCC
Q 006334 37 HGAVYIFGGCC--GGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW--GHKMIVFGGTNGYKKVNDLHILDLES 112 (650)
Q Consensus 37 ~~~IyvfGG~~--~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~--~~~lyVfGG~~~~~~~ndv~~yD~~t 112 (650)
++.||+.-... .....+.+++||+.++.+............-.-+.+++. ++.+||..+. +.+.++|+..
T Consensus 28 dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~------~~i~~~~~~g 101 (314)
T d1pjxa_ 28 NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR------LGLLVVQTDG 101 (314)
T ss_dssp TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT------TEEEEEETTS
T ss_pred CCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECC------CeEEEEeCCC
Confidence 57888864432 223446799999999988766432110111112344444 3567876542 4589999987
Q ss_pred CcEEeeecCCCCCCCCcccEEEEEcCCEEEEEc--cccC------CCCcccceEEEEecCCCceeeccccCCCCCCCCcc
Q 006334 113 KEWMRPECRGAPPSPRESHTATLVGDDKMVIFG--GSGE------GEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSH 184 (650)
Q Consensus 113 ~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~G--G~~~------~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~h 184 (650)
.....+.........+.-...++..++.||+.- +... ........+|+++++. ++..+.. .+..+ .
T Consensus 102 ~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~~~~~~~--~~~~p---N 175 (314)
T d1pjxa_ 102 TFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-QMIQVDT--AFQFP---N 175 (314)
T ss_dssp CEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-CEEEEEE--EESSE---E
T ss_pred cEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC-ceeEeeC--Cccee---e
Confidence 765543222111111222445656678899852 2110 0112234688888653 4444321 11111 1
Q ss_pred eeeee-c-C----EEEEEeccCCCCccCeEEEEECCCCc---EEEeeecCCCCCc-ccce-EEEE-ECCEEEEEeccCCC
Q 006334 185 SSNVI-A-N----RLFVYGGDCGDQYHGDIDMLDMNSLT---WSRLAIIGSSPGV-RAGH-AAIN-IGTKVYIIGGVGDK 252 (650)
Q Consensus 185 s~v~~-~-~----~Iyv~GG~~~~~~~n~v~~yd~~t~~---W~~i~~~g~~P~~-R~~~-s~v~-~~~~IyI~GG~~~~ 252 (650)
..+.. + + .||+..- ..+.+++||+.... +.++-. ..+.. .... .+++ .++.|||..-
T Consensus 176 Gi~~~~d~d~~~~~lyv~d~-----~~~~i~~~d~~~~g~~~~~~~~~--~~~~~~~~~pdGiavD~~GnlyVa~~---- 244 (314)
T d1pjxa_ 176 GIAVRHMNDGRPYQLIVAET-----PTKKLWSYDIKGPAKIENKKVWG--HIPGTHEGGADGMDFDEDNNLLVANW---- 244 (314)
T ss_dssp EEEEEECTTSCEEEEEEEET-----TTTEEEEEEEEETTEEEEEEEEE--ECCCCSSCEEEEEEEBTTCCEEEEEE----
T ss_pred eeEECCCCCcceeEEEEEee-----cccceEEeeccCccccceeeEEE--EccccccccceeeEEecCCcEEEEEc----
Confidence 12221 1 2 4676532 34688998865331 222211 11111 1112 2333 3568998731
Q ss_pred cccCeEEEEECCCCcEE-EeecCCCCCCCcceeEEEEEC-C-eEEEEcCCCCCCCCCCcEEEEecC
Q 006334 253 HYYNDIWILNVSTCSWS-QLDTCGQQPQGRFSHAAVVTG-S-DIVIYGGCGEDERPLNELLVLQLG 315 (650)
Q Consensus 253 ~~~~dv~~yD~~t~~W~-~l~~~~~~p~~R~~hsav~~~-~-~lyV~GG~~~~~~~~~d~~~l~l~ 315 (650)
..+.|++||++..... .+.. |..+. .++++.. + .|||.... ...++++++.
T Consensus 245 -~~g~I~~~dp~~g~~~~~i~~----p~~~~-t~~afg~d~~~lyVt~~~------~g~i~~~~~~ 298 (314)
T d1pjxa_ 245 -GSSHIEVFGPDGGQPKMRIRC----PFEKP-SNLHFKPQTKTIFVTEHE------NNAVWKFEWQ 298 (314)
T ss_dssp -TTTEEEEECTTCBSCSEEEEC----SSSCE-EEEEECTTSSEEEEEETT------TTEEEEEECS
T ss_pred -CCCEEEEEeCCCCEEEEEEEC----CCCCE-EEEEEeCCCCEEEEEECC------CCcEEEEECC
Confidence 1357999999876532 3332 22222 2333332 2 58887432 2578888875
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.81 E-value=1.5 Score=40.37 Aligned_cols=153 Identities=13% Similarity=0.161 Sum_probs=80.2
Q ss_pred CCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeeecCEEEEEeccCCCCccCeEEEEECCCCc
Q 006334 138 DDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLT 217 (650)
Q Consensus 138 ~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~ 217 (650)
++..++.|+.+ ..+.+||+.+.+-.... ......-.++..++.+++.|+.+ ..+..||....+
T Consensus 186 ~~~~l~s~~~d-------g~i~~~d~~~~~~~~~~-----~~~~~~v~~~~~~~~~l~s~s~d-----~~i~iwd~~~~~ 248 (342)
T d2ovrb2 186 DGIHVVSGSLD-------TSIRVWDVETGNCIHTL-----TGHQSLTSGMELKDNILVSGNAD-----STVKIWDIKTGQ 248 (342)
T ss_dssp CSSEEEEEETT-------SCEEEEETTTCCEEEEE-----CCCCSCEEEEEEETTEEEEEETT-----SCEEEEETTTCC
T ss_pred CCCEEEEEeCC-------CeEEEeecccceeeeEe-----cccccceeEEecCCCEEEEEcCC-----CEEEEEeccccc
Confidence 56667777763 24788888765533211 11111122334455666777654 468899987765
Q ss_pred EEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCcEEE-eecCCCCCCCcceeEEEEECC-eEEE
Q 006334 218 WSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQ-LDTCGQQPQGRFSHAAVVTGS-DIVI 295 (650)
Q Consensus 218 W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~-l~~~~~~p~~R~~hsav~~~~-~lyV 295 (650)
-...-. ..........+...++.+++.|+.+ ..+.+||+++++... +...........-.++....+ .+++
T Consensus 249 ~~~~~~--~~~~~~~~~~~~~~~~~~~~s~s~D-----g~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la 321 (342)
T d2ovrb2 249 CLQTLQ--GPNKHQSAVTCLQFNKNFVITSSDD-----GTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCA 321 (342)
T ss_dssp EEEEEC--STTSCSSCEEEEEECSSEEEEEETT-----SEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEE
T ss_pred cccccc--ccceeeeceeecccCCCeeEEEcCC-----CEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEE
Confidence 443321 1222233444555667777787754 368999999887543 222100000011112233344 4555
Q ss_pred EcCCCCCCCCCCcEEEEecCC
Q 006334 296 YGGCGEDERPLNELLVLQLGA 316 (650)
Q Consensus 296 ~GG~~~~~~~~~d~~~l~l~~ 316 (650)
.|+. ++.....++++|++.
T Consensus 322 ~g~~--dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 322 VGSR--NGTEETKLLVLDFDV 340 (342)
T ss_dssp EECS--SSSSCCEEEEEECCC
T ss_pred EEeC--CCCCeeEEEEEeCCC
Confidence 5653 333345678888764
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=94.71 E-value=1.8 Score=41.06 Aligned_cols=193 Identities=13% Similarity=0.026 Sum_probs=90.1
Q ss_pred CEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEE-ECCEEEEEcccCCCcCcCeEEEEECCCCcEE
Q 006334 38 GAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAIL-WGHKMIVFGGTNGYKKVNDLHILDLESKEWM 116 (650)
Q Consensus 38 ~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~-~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~ 116 (650)
+.+++.|+.+ ..+.+||..+........... ..... .++.+ .++++++.+|.+.. ..+.++|..+.+-.
T Consensus 70 g~~latg~~d-----g~i~iwd~~~~~~~~~~~~~~-~~~~v-~~v~~s~d~~~l~~~~~~~~---~~~~v~~~~~~~~~ 139 (311)
T d1nr0a1 70 GYYCASGDVH-----GNVRIWDTTQTTHILKTTIPV-FSGPV-KDISWDSESKRIAAVGEGRE---RFGHVFLFDTGTSN 139 (311)
T ss_dssp SSEEEEEETT-----SEEEEEESSSTTCCEEEEEEC-SSSCE-EEEEECTTSCEEEEEECCSS---CSEEEEETTTCCBC
T ss_pred CCeEeccccC-----ceEeeeeeecccccccccccc-ccCcc-cccccccccccccccccccc---cccccccccccccc
Confidence 4455555543 357788887765432111100 00111 12222 25666666664322 23556666665432
Q ss_pred eeecCCCCCCCC-cccEEEEEcCC-EEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee--cCE
Q 006334 117 RPECRGAPPSPR-ESHTATLVGDD-KMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI--ANR 192 (650)
Q Consensus 117 ~l~~~~~~P~~R-~~hs~~~~~~~-~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~--~~~ 192 (650)
.. ..... .-.++....++ .+++.|+.+ ..+.+||..+.+-.... ......-..+.+ ++.
T Consensus 140 ~~-----l~~h~~~v~~v~~~~~~~~~l~sgs~d-------~~i~i~d~~~~~~~~~~-----~~~~~~i~~v~~~p~~~ 202 (311)
T d1nr0a1 140 GN-----LTGQARAMNSVDFKPSRPFRIISGSDD-------NTVAIFEGPPFKFKSTF-----GEHTKFVHSVRYNPDGS 202 (311)
T ss_dssp BC-----CCCCSSCEEEEEECSSSSCEEEEEETT-------SCEEEEETTTBEEEEEE-----CCCSSCEEEEEECTTSS
T ss_pred cc-----ccccccccccccccccceeeecccccc-------ccccccccccccccccc-----ccccccccccccCcccc
Confidence 21 11001 11222222233 356667653 24788898775543321 111111122222 456
Q ss_pred EEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcc----cceEEEEE--CCEEEEEeccCCCcccCeEEEEECCCC
Q 006334 193 LFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVR----AGHAAINI--GTKVYIIGGVGDKHYYNDIWILNVSTC 266 (650)
Q Consensus 193 Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R----~~~s~v~~--~~~IyI~GG~~~~~~~~dv~~yD~~t~ 266 (650)
+++.|+.+ +.+..||..+..-...-. ...... ....++.+ ++++++.||.++ .+.+||+.+.
T Consensus 203 ~l~~~~~d-----~~v~~~d~~~~~~~~~~~--~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg-----~v~iwd~~t~ 270 (311)
T d1nr0a1 203 LFASTGGD-----GTIVLYNGVDGTKTGVFE--DDSLKNVAHSGSVFGLTWSPDGTKIASASADK-----TIKIWNVATL 270 (311)
T ss_dssp EEEEEETT-----SCEEEEETTTCCEEEECB--CTTSSSCSSSSCEEEEEECTTSSEEEEEETTS-----EEEEEETTTT
T ss_pred cccccccc-----cccccccccccccccccc--ccccccccccccccccccCCCCCEEEEEeCCC-----eEEEEECCCC
Confidence 66777654 468889987765333211 111111 11223333 456777777543 5899999887
Q ss_pred cEE
Q 006334 267 SWS 269 (650)
Q Consensus 267 ~W~ 269 (650)
+-.
T Consensus 271 ~~~ 273 (311)
T d1nr0a1 271 KVE 273 (311)
T ss_dssp EEE
T ss_pred cEE
Confidence 643
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.63 E-value=1.9 Score=40.85 Aligned_cols=188 Identities=14% Similarity=0.135 Sum_probs=92.0
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCcCcCeEEEEECCCCcE
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW-GHKMIVFGGTNGYKKVNDLHILDLESKEW 115 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~-~~~lyVfGG~~~~~~~ndv~~yD~~t~~W 115 (650)
++..++.|+.+ ..+.+||....+......... . ...-..+.+. ++.+++.|+.+ ..+..+|..+.+-
T Consensus 108 dg~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~-~-~~~v~~~~~~~~~~~l~s~~~d-----~~i~~~~~~~~~~ 175 (337)
T d1gxra_ 108 DGCTLIVGGEA-----STLSIWDLAAPTPRIKAELTS-S-APACYALAISPDSKVCFSCCSD-----GNIAVWDLHNQTL 175 (337)
T ss_dssp TSSEEEEEESS-----SEEEEEECCCC--EEEEEEEC-S-SSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTTEE
T ss_pred CCCEEEEeecc-----ccccccccccccccccccccc-c-cccccccccccccccccccccc-----ccccccccccccc
Confidence 34555566643 357888887666544332211 0 1111222222 45566666543 3578888887754
Q ss_pred EeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee-cCEEE
Q 006334 116 MRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI-ANRLF 194 (650)
Q Consensus 116 ~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~-~~~Iy 194 (650)
...... ....-.++....++..+++|+.+ +.+.+||+.+.+-.... ... ..-.++... ++.++
T Consensus 176 ~~~~~~----~~~~v~~l~~s~~~~~~~~~~~d-------~~v~i~d~~~~~~~~~~---~~~--~~i~~l~~~~~~~~l 239 (337)
T d1gxra_ 176 VRQFQG----HTDGASCIDISNDGTKLWTGGLD-------NTVRSWDLREGRQLQQH---DFT--SQIFSLGYCPTGEWL 239 (337)
T ss_dssp EEEECC----CSSCEEEEEECTTSSEEEEEETT-------SEEEEEETTTTEEEEEE---ECS--SCEEEEEECTTSSEE
T ss_pred cccccc----ccccccccccccccccccccccc-------ccccccccccceeeccc---ccc--cceEEEEEccccccc
Confidence 332111 11112223333456677777753 35788888765422111 111 111222222 45566
Q ss_pred EEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEE-ECCEEEEEeccCCCcccCeEEEEECCCCc
Q 006334 195 VYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAIN-IGTKVYIIGGVGDKHYYNDIWILNVSTCS 267 (650)
Q Consensus 195 v~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~-~~~~IyI~GG~~~~~~~~dv~~yD~~t~~ 267 (650)
+.|+.+ ..+..||..+..-...... ... -.++.. .++++++.|+.+ ..+.+||..+.+
T Consensus 240 ~~~~~d-----~~i~i~d~~~~~~~~~~~~----~~~-i~~v~~s~~g~~l~s~s~D-----g~i~iwd~~~~~ 298 (337)
T d1gxra_ 240 AVGMES-----SNVEVLHVNKPDKYQLHLH----ESC-VLSLKFAYCGKWFVSTGKD-----NLLNAWRTPYGA 298 (337)
T ss_dssp EEEETT-----SCEEEEETTSSCEEEECCC----SSC-EEEEEECTTSSEEEEEETT-----SEEEEEETTTCC
T ss_pred ceeccc-----ccccccccccccccccccc----ccc-cceEEECCCCCEEEEEeCC-----CeEEEEECCCCC
Confidence 666654 4688899887664433211 111 112222 245677777654 358888987764
|
| >d1itva_ b.66.1.1 (A:) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Gelatinase B (MMP-9) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.43 E-value=0.74 Score=41.87 Aligned_cols=151 Identities=17% Similarity=0.157 Sum_probs=82.5
Q ss_pred EEEEECCEEEEEccCCCCcccceEEEEECCCCcEEE----eec-CCCCCCCCcceEEEE--ECCEEEEEcccCCCcCcCe
Q 006334 32 SACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMVWST----LAT-TGQGPGPRDSHSAIL--WGHKMIVFGGTNGYKKVND 104 (650)
Q Consensus 32 s~v~~~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~----l~~-~g~~P~pR~~hsa~~--~~~~lyVfGG~~~~~~~nd 104 (650)
+++.++|.+|+|-| +.+|+|+........ +.. -...|.. --++.. .++++|+|-| +.
T Consensus 11 Av~~~~G~~y~Fkg-------~~ywr~~~~~~~~~~~P~~I~~~w~glp~~--IDAAf~~~~~~k~yfFkg-------~~ 74 (195)
T d1itva_ 11 AIAEIGNQLYLFKD-------GKYWRFSEGRGSRPQGPFLIADKWPALPRK--LDSVFEEPLSKKLFFFSG-------RQ 74 (195)
T ss_dssp EEEEETTEEEEEET-------TEEEEECCSSSCCCEEEEEHHHHCTTSCSS--CSEEEECTTTCCEEEEET-------TE
T ss_pred eEEEeCCEEEEEEC-------CEEEEEeCCCCCcCCCcEEeeeecCCCCCC--ccEEEEECCCCEEEEEec-------CE
Confidence 35677899999988 368888754333211 111 1111221 112222 2578999876 46
Q ss_pred EEEEECCCCcE-EeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceee-----cc-ccCCC
Q 006334 105 LHILDLESKEW-MRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWAS-----PA-VKGDI 177 (650)
Q Consensus 105 v~~yD~~t~~W-~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~-----i~-~~~~l 177 (650)
+|+|+-..-.. +.+...+.+...-..-++....++++|+|=|. ..|+||..+++-.. +. .-..+
T Consensus 75 ~~~y~~~~~~~Pk~i~~~g~p~~~~~idaa~~~~~g~~Y~FkG~---------~y~ryd~~~~~v~~gyPk~i~~~w~gv 145 (195)
T d1itva_ 75 VWVYTGASVLGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSGR---------RLWRFDVKAQMVDPRSASEVDRMFPGV 145 (195)
T ss_dssp EEEEETTEEEEEEEGGGGTCCTTCCCCCEEEECSTTEEEEEETT---------EEEEEETTTTEECGGGCEEHHHHSTTS
T ss_pred EEEEcCccccCCEEhhhcCCCCCchheeeEEEcCCCeEEEEecc---------EEEEEeCCcccccCCCccchhhhcCCC
Confidence 88887432211 12221121112222234444557899999663 48999987664332 10 00133
Q ss_pred CCCCCcceeeeecCEEEEEeccCCCCccCeEEEEECCCC
Q 006334 178 PVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSL 216 (650)
Q Consensus 178 P~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~ 216 (650)
| ..-.++...++.+|+|-| +..|+||..+.
T Consensus 146 p--~~idaAf~~~~~~Yffkg-------~~y~r~~~~~~ 175 (195)
T d1itva_ 146 P--LDTHDVFQFREKAYFCQD-------RFYWRVSSRSE 175 (195)
T ss_dssp C--SSCSEEEEETTEEEEEET-------TEEEEEECCTT
T ss_pred C--CCCcEEEEeCCcEEEEEC-------CEEEEEcCCce
Confidence 3 233455567899999988 57788987655
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=94.31 E-value=1.7 Score=42.07 Aligned_cols=153 Identities=10% Similarity=0.076 Sum_probs=79.4
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCcCcCeEEEEECCCCcE
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW-GHKMIVFGGTNGYKKVNDLHILDLESKEW 115 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~-~~~lyVfGG~~~~~~~ndv~~yD~~t~~W 115 (650)
++.++++|+.+ ..+.+||..++++..+..... ....-.++.+. ++++++.||.++ .+.++|+.+++|
T Consensus 18 dg~~la~~~~~-----~~i~iw~~~~~~~~~~~~l~g--H~~~V~~l~fsp~~~~l~s~s~D~-----~i~vWd~~~~~~ 85 (371)
T d1k8kc_ 18 DRTQIAICPNN-----HEVHIYEKSGNKWVQVHELKE--HNGQVTGVDWAPDSNRIVTCGTDR-----NAYVWTLKGRTW 85 (371)
T ss_dssp TSSEEEEECSS-----SEEEEEEEETTEEEEEEEEEC--CSSCEEEEEEETTTTEEEEEETTS-----CEEEEEEETTEE
T ss_pred CCCEEEEEeCC-----CEEEEEECCCCCEEEEEEecC--CCCCEEEEEECCCCCEEEEEECCC-----eEEEEeeccccc
Confidence 45666677643 368889998888877654311 01111233333 566667776543 578888888888
Q ss_pred EeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee--cCEE
Q 006334 116 MRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI--ANRL 193 (650)
Q Consensus 116 ~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~--~~~I 193 (650)
........ ..+.-..+....+++.++.|+.+. .-.+|.++.....|..... ....+..-..+.+ ++.+
T Consensus 86 ~~~~~~~~--~~~~v~~i~~~p~~~~l~~~s~d~-----~i~i~~~~~~~~~~~~~~~---~~~~~~~v~~v~~~p~~~~ 155 (371)
T d1k8kc_ 86 KPTLVILR--INRAARCVRWAPNEKKFAVGSGSR-----VISICYFEQENDWWVCKHI---KKPIRSTVLSLDWHPNSVL 155 (371)
T ss_dssp EEEEECCC--CSSCEEEEEECTTSSEEEEEETTS-----SEEEEEEETTTTEEEEEEE---CTTCCSCEEEEEECTTSSE
T ss_pred cccccccc--ccccccccccccccccceeecccC-----cceeeeeeccccccccccc---ccccccccccccccccccc
Confidence 76522111 112223333334566666666421 1235555555555543221 1111122222222 4567
Q ss_pred EEEeccCCCCccCeEEEEECCCC
Q 006334 194 FVYGGDCGDQYHGDIDMLDMNSL 216 (650)
Q Consensus 194 yv~GG~~~~~~~n~v~~yd~~t~ 216 (650)
++.|+.++ .+..||....
T Consensus 156 l~s~s~D~-----~v~v~~~~~~ 173 (371)
T d1k8kc_ 156 LAAGSCDF-----KCRIFSAYIK 173 (371)
T ss_dssp EEEEETTS-----CEEEEECCCT
T ss_pred eeccccCc-----EEEEEeeccC
Confidence 77777653 5667776543
|
| >d1su3a2 b.66.1.1 (A:271-465) Collagenase (MMP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Collagenase (MMP1), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.83 E-value=1.1 Score=40.63 Aligned_cols=157 Identities=13% Similarity=-0.008 Sum_probs=87.7
Q ss_pred EEEEECCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCC---CCCCCcceEEEEE--CCEEEEEcccCCCcCcCeEE
Q 006334 32 SACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQ---GPGPRDSHSAILW--GHKMIVFGGTNGYKKVNDLH 106 (650)
Q Consensus 32 s~v~~~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~---~P~pR~~hsa~~~--~~~lyVfGG~~~~~~~ndv~ 106 (650)
+++.+++.+|+|=|. .+|+++.............. .|... -++... ++++|+|-| +.+|
T Consensus 16 Av~~~~G~~y~Fkg~-------~~wr~~~~~~~~~p~~i~~~w~glp~~I--DAAf~~~~~~~~yfFkG-------~~y~ 79 (195)
T d1su3a2 16 AITTIRGEVMFFKDR-------FYMRTNPFYPEVELNFISVFWPQLPNGL--EAAYEFADRDEVRFFKG-------NKYW 79 (195)
T ss_dssp EEEEETTEEEEEETT-------EEEECCTTSSSCEEEEGGGTCTTSCSSC--CEEEEEGGGTEEEEEET-------TEEE
T ss_pred EEEEcCCeEEEEeCC-------EEEEeeCCCCccCccchHhhCcCCCCcc--cceEEecCCcEEEEECC-------cEEE
Confidence 566789999999883 46777665554443322211 12222 233333 589999988 6789
Q ss_pred EEECCCCc---EEeeec-CCCCCCCCcccEEEEE-cCCEEEEEccccCCCCcccceEEEEecCCCceee-----ccc-cC
Q 006334 107 ILDLESKE---WMRPEC-RGAPPSPRESHTATLV-GDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWAS-----PAV-KG 175 (650)
Q Consensus 107 ~yD~~t~~---W~~l~~-~~~~P~~R~~hs~~~~-~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~-----i~~-~~ 175 (650)
+|+-.+.. -..+.. -+.+.....--++... .++++|+|-|. ..|+||..+++-.. +.. -.
T Consensus 80 ~y~~~~~~~g~p~~i~~~~G~p~~~~~idaa~~~~~~~~~Y~FkG~---------~y~ry~~~~~~vd~gyPk~I~~~w~ 150 (195)
T d1su3a2 80 AVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVAN---------KYWRYDEYKRSMDPGYPKMIAHDFP 150 (195)
T ss_dssp EEETTEECTTCSEEHHHHHCCCTTCCCCCEEEEETTTTEEEEEETT---------EEEEEETTTTEECSSCSEEHHHHST
T ss_pred EEcCCccccCCCccchhhcCCCCCccccccccccCCCCeEEEEeCC---------EEEEEeccCccccCCcccccccccC
Confidence 99743321 112110 0111111112223333 35799999874 47999987654321 110 01
Q ss_pred CCCCCCCcceeeeecCEEEEEeccCCCCccCeEEEEECCCCcEEEee
Q 006334 176 DIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLA 222 (650)
Q Consensus 176 ~lP~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~ 222 (650)
.+|.. -.++...++++|+|-| +..++||..+.+-..+.
T Consensus 151 Gvp~~--iDAAf~~~g~~YfFkg-------~~y~r~~~~~~~v~~~~ 188 (195)
T d1su3a2 151 GIGHK--VDAVFMKDGFFYFFHG-------TRQYKFDPKTKRILTLQ 188 (195)
T ss_dssp TSCSC--CSEEEEETTEEEEEET-------TEEEEEETTTTEEEEEE
T ss_pred CCCCC--ccEEEEECCeEEEEEC-------CEEEEEeCCcCEEEecC
Confidence 33322 2344456899999988 68899998877655443
|
| >d1pexa_ b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Collagenase-3 (MMP-13), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.78 E-value=1.3 Score=39.91 Aligned_cols=153 Identities=10% Similarity=0.080 Sum_probs=84.6
Q ss_pred EEEEECCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecC---CCCCCCCcccEEEEE-cCCEEEEEccccCCCCcccce
Q 006334 82 SAILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECR---GAPPSPRESHTATLV-GDDKMVIFGGSGEGEANYLND 157 (650)
Q Consensus 82 sa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~---~~~P~~R~~hs~~~~-~~~~Lyv~GG~~~~~~~~~~d 157 (650)
+++.++|.+|+|=| +.+|+++.....+....+. ..+|. .--++... .++++|+|-|. .
T Consensus 13 Av~~~~g~~y~Fkg-------~~~wr~~~~~~~~~p~~i~~~w~~lp~--~IDAAf~~~~~~~~yffkg~---------~ 74 (192)
T d1pexa_ 13 AITSLRGETMIFKD-------RFFWRLHPQQVDAELFLTKSFWPELPN--RIDAAYEHPSHDLIFIFRGR---------K 74 (192)
T ss_dssp EEEEETTEEEEEET-------TEEEEECSSSSCCEEEEHHHHCTTSCS--SCCEEEEETTTTEEEEEETT---------E
T ss_pred EEEEcCCeEEEEEC-------CEEEEEcCCCCCCcccchhhhCcCCCC--cccceEEEcCCCEEEEEcCC---------E
Confidence 46677999999977 4677776555444332221 12222 12233333 35889988775 3
Q ss_pred EEEEecCCCcee---eccccCCCCCCCCcc-eeee--ecCEEEEEeccCCCCccCeEEEEECCCCcEEE-----eee-cC
Q 006334 158 LHVLDLKTMRWA---SPAVKGDIPVPRDSH-SSNV--IANRLFVYGGDCGDQYHGDIDMLDMNSLTWSR-----LAI-IG 225 (650)
Q Consensus 158 v~~yd~~t~~Wt---~i~~~~~lP~~R~~h-s~v~--~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~-----i~~-~g 225 (650)
+|+|+-.+..+- .+... .+|.+...- ++.. .++++|+|-| +..|+||..+..-.. +.. -+
T Consensus 75 ~w~y~~~~~~~gyPk~i~~~-~~~~~~~~idaA~~~~~~~~~y~Fkg-------~~y~~y~~~~~~~~~~~pk~I~~~w~ 146 (192)
T d1pexa_ 75 FWALNGYDILEGYPKKISEL-GLPKEVKKISAAVHFEDTGKTLLFSG-------NQVWRYDDTNHIMDKDYPRLIEEDFP 146 (192)
T ss_dssp EEEESTTCCCTTCSEESTTT-TCCTTCCCCCEEEECTTTSEEEEEET-------TEEEEEETTTTEECSSCCCBHHHHST
T ss_pred EEEEcCCcccCCCCeEeeee-ecCCCCCCccEEEEECCCCEEEEEeC-------CEEEEEcCccccccCCCcEEHhhcCC
Confidence 788875543331 12210 122221111 2222 2589999988 678999987664221 111 01
Q ss_pred CCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCcEE
Q 006334 226 SSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCSWS 269 (650)
Q Consensus 226 ~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~ 269 (650)
.+|. .. .++...++++|+|-| +..|+||..+++=.
T Consensus 147 gvp~-~v-dAa~~~~g~~YfF~g-------~~y~r~~~~~~~v~ 181 (192)
T d1pexa_ 147 GIGD-KV-DAVYEKNGYIYFFNG-------PIQFEYSIWSNRIV 181 (192)
T ss_dssp TSCS-CC-SEEEEETTEEEEEET-------TEEEEEETTTTEEE
T ss_pred CCCC-Cc-eEEEEeCCEEEEEEC-------CEEEEEeCCcCeEc
Confidence 1221 22 244467899999976 47899998876543
|
| >d1su3a2 b.66.1.1 (A:271-465) Collagenase (MMP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Collagenase (MMP1), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.44 E-value=1.4 Score=39.80 Aligned_cols=158 Identities=10% Similarity=0.010 Sum_probs=85.5
Q ss_pred EEEEECCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCC-CCCcccEEEEEc-CCEEEEEccccCCCCcccceEE
Q 006334 82 SAILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPP-SPRESHTATLVG-DDKMVIFGGSGEGEANYLNDLH 159 (650)
Q Consensus 82 sa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P-~~R~~hs~~~~~-~~~Lyv~GG~~~~~~~~~~dv~ 159 (650)
+++.+++.+|+|-| ..+|+++..........+....| .+..--++.... ++++|+|-|. ..|
T Consensus 16 Av~~~~G~~y~Fkg-------~~~wr~~~~~~~~~p~~i~~~w~glp~~IDAAf~~~~~~~~yfFkG~---------~y~ 79 (195)
T d1su3a2 16 AITTIRGEVMFFKD-------RFYMRTNPFYPEVELNFISVFWPQLPNGLEAAYEFADRDEVRFFKGN---------KYW 79 (195)
T ss_dssp EEEEETTEEEEEET-------TEEEECCTTSSSCEEEEGGGTCTTSCSSCCEEEEEGGGTEEEEEETT---------EEE
T ss_pred EEEEcCCeEEEEeC-------CEEEEeeCCCCccCccchHhhCcCCCCcccceEEecCCcEEEEECCc---------EEE
Confidence 45667999999987 34666665544443222221111 122223444343 5899999875 488
Q ss_pred EEecCCCce---eeccccCCCCCCCCcceee-ee--cCEEEEEeccCCCCccCeEEEEECCCCcEEE-----eee-cCCC
Q 006334 160 VLDLKTMRW---ASPAVKGDIPVPRDSHSSN-VI--ANRLFVYGGDCGDQYHGDIDMLDMNSLTWSR-----LAI-IGSS 227 (650)
Q Consensus 160 ~yd~~t~~W---t~i~~~~~lP~~R~~hs~v-~~--~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~-----i~~-~g~~ 227 (650)
+|+-.+..+ ..+...-.+|.....--++ .+ ++++|+|-| +..|+||..+..-.. |.. -..+
T Consensus 80 ~y~~~~~~~g~p~~i~~~~G~p~~~~~idaa~~~~~~~~~Y~FkG-------~~y~ry~~~~~~vd~gyPk~I~~~w~Gv 152 (195)
T d1su3a2 80 AVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVA-------NKYWRYDEYKRSMDPGYPKMIAHDFPGI 152 (195)
T ss_dssp EEETTEECTTCSEEHHHHHCCCTTCCCCCEEEEETTTTEEEEEET-------TEEEEEETTTTEECSSCSEEHHHHSTTS
T ss_pred EEcCCccccCCCccchhhcCCCCCccccccccccCCCCeEEEEeC-------CEEEEEeccCccccCCcccccccccCCC
Confidence 887432221 1111000233222222222 22 479999988 678999988764211 111 0112
Q ss_pred CCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCcEEEe
Q 006334 228 PGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQL 271 (650)
Q Consensus 228 P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l 271 (650)
|. ... ++...++++|+|-| +..|+||..+.+-..+
T Consensus 153 p~-~iD-AAf~~~g~~YfFkg-------~~y~r~~~~~~~v~~~ 187 (195)
T d1su3a2 153 GH-KVD-AVFMKDGFFYFFHG-------TRQYKFDPKTKRILTL 187 (195)
T ss_dssp CS-CCS-EEEEETTEEEEEET-------TEEEEEETTTTEEEEE
T ss_pred CC-Ccc-EEEEECCeEEEEEC-------CEEEEEeCCcCEEEec
Confidence 22 233 44466889999976 4789999887654443
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=93.40 E-value=1 Score=42.47 Aligned_cols=145 Identities=13% Similarity=0.052 Sum_probs=82.1
Q ss_pred ceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccE
Q 006334 53 GDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHT 132 (650)
Q Consensus 53 ~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs 132 (650)
.++++||..++....+... .+..+.+..-+++.++++|.... +.++++|..+.....+. .....-..
T Consensus 24 g~v~v~d~~~~~~~~~~~~-----~~v~~~~~spDg~~l~~~~~~~g---~~v~v~d~~~~~~~~~~-----~~~~~v~~ 90 (360)
T d1k32a3 24 GQAFIQDVSGTYVLKVPEP-----LRIRYVRRGGDTKVAFIHGTREG---DFLGIYDYRTGKAEKFE-----ENLGNVFA 90 (360)
T ss_dssp TEEEEECTTSSBEEECSCC-----SCEEEEEECSSSEEEEEEEETTE---EEEEEEETTTCCEEECC-----CCCCSEEE
T ss_pred CeEEEEECCCCcEEEccCC-----CCEEEEEECCCCCEEEEEEcCCC---CEEEEEECCCCcEEEee-----CCCceEEe
Confidence 3789999988887766321 24434334447887777665332 34889999998877652 11222334
Q ss_pred EEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeeecCEEEEEeccCCC-----CccCe
Q 006334 133 ATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGD-----QYHGD 207 (650)
Q Consensus 133 ~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~~-----~~~n~ 207 (650)
+....+++.+++++.+ ..++.++..+.....+. ..........+..-+++.+++.+.... .....
T Consensus 91 ~~~spdg~~l~~~~~~-------~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~ 160 (360)
T d1k32a3 91 MGVDRNGKFAVVANDR-------FEIMTVDLETGKPTVIE---RSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQA 160 (360)
T ss_dssp EEECTTSSEEEEEETT-------SEEEEEETTTCCEEEEE---ECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEE
T ss_pred eeecccccccceeccc-------cccccccccccceeeee---ecccccccchhhccceeeeeeeccccccceeeccccc
Confidence 4555577777777653 35788888877655432 111111111222235666665543221 23345
Q ss_pred EEEEECCCCcEEE
Q 006334 208 IDMLDMNSLTWSR 220 (650)
Q Consensus 208 v~~yd~~t~~W~~ 220 (650)
++.+|..+.+=..
T Consensus 161 ~~v~d~~~~~~~~ 173 (360)
T d1k32a3 161 IHVYDMEGRKIFA 173 (360)
T ss_dssp EEEEETTTTEEEE
T ss_pred eeeeccccCceee
Confidence 7889988765443
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=93.39 E-value=2.6 Score=40.39 Aligned_cols=208 Identities=9% Similarity=0.018 Sum_probs=108.3
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCcCcCeEEEEECCCCcE
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW-GHKMIVFGGTNGYKKVNDLHILDLESKEW 115 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~-~~~lyVfGG~~~~~~~ndv~~yD~~t~~W 115 (650)
++.||+.-= ....++++|+.++........ ..-.-+.+++. +++|||..-. +......+..+|..+...
T Consensus 50 ~G~Ly~~D~-----~~g~I~ri~p~g~~~~~~~~~----~~~~p~gla~~~dG~l~va~~~-~~~~~~~i~~~~~~~~~~ 119 (319)
T d2dg1a1 50 QGQLFLLDV-----FEGNIFKINPETKEIKRPFVS----HKANPAAIKIHKDGRLFVCYLG-DFKSTGGIFAATENGDNL 119 (319)
T ss_dssp TSCEEEEET-----TTCEEEEECTTTCCEEEEEEC----SSSSEEEEEECTTSCEEEEECT-TSSSCCEEEEECTTSCSC
T ss_pred CCCEEEEEC-----CCCEEEEEECCCCeEEEEEeC----CCCCeeEEEECCCCCEEEEecC-CCccceeEEEEcCCCcee
Confidence 467887632 235699999988765544322 11223455554 6789886421 122345688888888766
Q ss_pred EeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee--cCEE
Q 006334 116 MRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI--ANRL 193 (650)
Q Consensus 116 ~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~--~~~I 193 (650)
..+.. ..........+++..++.||+-.-. .........+++++++...++.+.. .+..+ ..++.- ++.|
T Consensus 120 ~~~~~--~~~~~~~~nd~~~d~~G~l~vtd~~-~~~~~~~g~v~~~~~dg~~~~~~~~--~~~~p---nGia~s~dg~~l 191 (319)
T d2dg1a1 120 QDIIE--DLSTAYCIDDMVFDSKGGFYFTDFR-GYSTNPLGGVYYVSPDFRTVTPIIQ--NISVA---NGIALSTDEKVL 191 (319)
T ss_dssp EEEEC--SSSSCCCEEEEEECTTSCEEEEECC-CBTTBCCEEEEEECTTSCCEEEEEE--EESSE---EEEEECTTSSEE
T ss_pred eeecc--CCCcccCCcceeEEeccceeecccc-cccccCcceeEEEecccceeEEEee--cccee---eeeeeccccceE
Confidence 55411 1122222334455557888874221 1122335678999988776665431 11111 122222 3568
Q ss_pred EEEeccCCCCccCeEEEEECCCCc---EEEeeec-CCCCCcccceEEEE-ECCEEEEEeccCCCcccCeEEEEECCCCcE
Q 006334 194 FVYGGDCGDQYHGDIDMLDMNSLT---WSRLAII-GSSPGVRAGHAAIN-IGTKVYIIGGVGDKHYYNDIWILNVSTCSW 268 (650)
Q Consensus 194 yv~GG~~~~~~~n~v~~yd~~t~~---W~~i~~~-g~~P~~R~~~s~v~-~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W 268 (650)
|+.-- ..+.+++||++... +...... ........-..+++ .++.|||.-- ....|++||++-..-
T Consensus 192 yvad~-----~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~-----~~g~V~~~~p~G~~l 261 (319)
T d2dg1a1 192 WVTET-----TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMY-----GQGRVLVFNKRGYPI 261 (319)
T ss_dssp EEEEG-----GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEE-----TTTEEEEECTTSCEE
T ss_pred EEecc-----cCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEc-----CCCEEEEECCCCcEE
Confidence 88632 34689999865431 1111100 01111111123333 3468998832 124799999876655
Q ss_pred EEee
Q 006334 269 SQLD 272 (650)
Q Consensus 269 ~~l~ 272 (650)
..+.
T Consensus 262 ~~i~ 265 (319)
T d2dg1a1 262 GQIL 265 (319)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5565
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=92.85 E-value=1 Score=41.66 Aligned_cols=149 Identities=11% Similarity=0.152 Sum_probs=76.6
Q ss_pred CCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCC
Q 006334 87 GHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTM 166 (650)
Q Consensus 87 ~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~ 166 (650)
++++++.|+.+ ..+..||+.+.+...+.... ....-.++....++.+++.|+.+ ..+.+||..++
T Consensus 147 ~~~~l~~g~~d-----g~i~~~d~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~d-------~~i~~~~~~~~ 211 (299)
T d1nr0a2 147 DKQFVAVGGQD-----SKVHVYKLSGASVSEVKTIV---HPAEITSVAFSNNGAFLVATDQS-------RKVIPYSVANN 211 (299)
T ss_dssp TSCEEEEEETT-----SEEEEEEEETTEEEEEEEEE---CSSCEEEEEECTTSSEEEEEETT-------SCEEEEEGGGT
T ss_pred ccccccccccc-----cccccccccccccccccccc---ccccccccccccccccccccccc-------ccccccccccc
Confidence 56677777654 36788888777655432211 11112233334456667777653 25889998776
Q ss_pred ceeeccccCCCCCCCCcceeeee--cCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEE
Q 006334 167 RWASPAVKGDIPVPRDSHSSNVI--ANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVY 244 (650)
Q Consensus 167 ~Wt~i~~~~~lP~~R~~hs~v~~--~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~Iy 244 (650)
...... ..+......-..+.+ ++.+++.|+.+ +.+..||+.+.....+.....-. ...-.+++..++..+
T Consensus 212 ~~~~~~--~~~~~h~~~v~~l~~s~~~~~l~sgs~d-----g~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~l 283 (299)
T d1nr0a2 212 FELAHT--NSWTFHTAKVACVSWSPDNVRLATGSLD-----NSVIVWNMNKPSDHPIIIKGAHA-MSSVNSVIWLNETTI 283 (299)
T ss_dssp TEESCC--CCCCCCSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTCTTSCCEEETTSST-TSCEEEEEEEETTEE
T ss_pred cccccc--ccccccccccccccccccccceEEEcCC-----CEEEEEECCCCCcceEEEecCCC-CCcEEEEEECCCCEE
Confidence 554321 112111111122222 56777778765 46889998876544333211111 111122333455667
Q ss_pred EEeccCCCcccCeEEEEEC
Q 006334 245 IIGGVGDKHYYNDIWILNV 263 (650)
Q Consensus 245 I~GG~~~~~~~~dv~~yD~ 263 (650)
+.||.++ .+.+||+
T Consensus 284 ~s~s~D~-----~i~iWdl 297 (299)
T d1nr0a2 284 VSAGQDS-----NIKFWNV 297 (299)
T ss_dssp EEEETTS-----CEEEEEC
T ss_pred EEEeCCC-----EEEEEec
Confidence 7777543 4566665
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=92.49 E-value=2.3 Score=39.29 Aligned_cols=240 Identities=13% Similarity=0.047 Sum_probs=110.9
Q ss_pred CEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCC-CCCcceEEEEE-C-CEEEEEcccCC------CcCcCeEEEE
Q 006334 38 GAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGP-GPRDSHSAILW-G-HKMIVFGGTNG------YKKVNDLHIL 108 (650)
Q Consensus 38 ~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P-~pR~~hsa~~~-~-~~lyVfGG~~~------~~~~ndv~~y 108 (650)
.+||+.|.. .+.+++||..+++........... .....+.+++. + +.+|+.+.... ......+..+
T Consensus 46 ~~l~v~~~~-----~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~ 120 (337)
T d1pbyb_ 46 RIAYATVNK-----SESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALY 120 (337)
T ss_dssp SEEEEEETT-----TTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEE
T ss_pred CEEEEEECC-----CCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeec
Confidence 477887653 247999999988765433221110 01112233333 3 45555433211 1123567788
Q ss_pred ECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCC-------CCC
Q 006334 109 DLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIP-------VPR 181 (650)
Q Consensus 109 D~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP-------~~R 181 (650)
|..+.+-...- +....-+.+++..+++.++.++. +...+|..+.+-.........+ ...
T Consensus 121 d~~~~~~~~~~-----~~~~~~~~~~~s~dg~~l~~~~~---------~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (337)
T d1pbyb_ 121 DAETLSRRKAF-----EAPRQITMLAWARDGSKLYGLGR---------DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVL 186 (337)
T ss_dssp ETTTTEEEEEE-----ECCSSCCCEEECTTSSCEEEESS---------SEEEEETTTTEEEEEECSTTTTTTTBCCCBCC
T ss_pred cccCCeEEEec-----cccCCceEEEEcCCCCEEEEEcC---------CcceeeeecCcEEEEeecCCccccceecCCcc
Confidence 88887643321 11222334455555554444442 2445666554322110000000 000
Q ss_pred CcceeeeecC---EEEEEeccCCC-----CccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCc
Q 006334 182 DSHSSNVIAN---RLFVYGGDCGD-----QYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKH 253 (650)
Q Consensus 182 ~~hs~v~~~~---~Iyv~GG~~~~-----~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~ 253 (650)
.........+ ..+........ .....+..+|..+..+..... .+.......+....+..+++++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~----- 258 (337)
T d1pbyb_ 187 AVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREV---RIMDVFYFSTAVNPAKTRAFGA----- 258 (337)
T ss_dssp CCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEE---EECSSCEEEEEECTTSSEEEEE-----
T ss_pred eeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEe---cCCCcceEEEEecccceEEEEc-----
Confidence 0000000011 12222222211 223458888988888776552 2233333444444443344433
Q ss_pred ccCeEEEEECCCCcEEEeecCCCCCCCcceeEEEEE-CCeEEEEcCCCCCCCCCCcEEEEecCC
Q 006334 254 YYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVT-GSDIVIYGGCGEDERPLNELLVLQLGA 316 (650)
Q Consensus 254 ~~~dv~~yD~~t~~W~~l~~~~~~p~~R~~hsav~~-~~~lyV~GG~~~~~~~~~d~~~l~l~~ 316 (650)
.+.+.+||+.+.+....-..+ ..-.++++. +++.+.+|+. .+.+.++|...
T Consensus 259 -~~~i~v~d~~~~~~~~~~~~~-----~~~~~~~~s~dG~~l~v~~~------~~~i~v~D~~t 310 (337)
T d1pbyb_ 259 -YNVLESFDLEKNASIKRVPLP-----HSYYSVNVSTDGSTVWLGGA------LGDLAAYDAET 310 (337)
T ss_dssp -ESEEEEEETTTTEEEEEEECS-----SCCCEEEECTTSCEEEEESB------SSEEEEEETTT
T ss_pred -cccEEEEECCCCcEEEEEcCC-----CCEEEEEECCCCCEEEEEeC------CCcEEEEECCC
Confidence 257999999998766543221 112344444 4554445553 24678888764
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=92.13 E-value=1.8 Score=40.62 Aligned_cols=155 Identities=15% Similarity=0.101 Sum_probs=87.1
Q ss_pred CCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCC
Q 006334 87 GHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTM 166 (650)
Q Consensus 87 ~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~ 166 (650)
+++++.+++. .+++++|..++...++ . . ..+. .......+++.+++.|.+++ ..++++|..++
T Consensus 14 dG~~~a~~~~------g~v~v~d~~~~~~~~~---~-~-~~~v-~~~~~spDg~~l~~~~~~~g-----~~v~v~d~~~~ 76 (360)
T d1k32a3 14 DGDLIAFVSR------GQAFIQDVSGTYVLKV---P-E-PLRI-RYVRRGGDTKVAFIHGTREG-----DFLGIYDYRTG 76 (360)
T ss_dssp GGGCEEEEET------TEEEEECTTSSBEEEC---S-C-CSCE-EEEEECSSSEEEEEEEETTE-----EEEEEEETTTC
T ss_pred CCCEEEEEEC------CeEEEEECCCCcEEEc---c-C-CCCE-EEEEECCCCCEEEEEEcCCC-----CEEEEEECCCC
Confidence 5666666542 4689999988888775 1 1 2232 23444457887777665321 24889999888
Q ss_pred ceeeccccCCCCCCCCcceeeee-cCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEE
Q 006334 167 RWASPAVKGDIPVPRDSHSSNVI-ANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYI 245 (650)
Q Consensus 167 ~Wt~i~~~~~lP~~R~~hs~v~~-~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI 245 (650)
....+. .. ...-..++.. +++.+++++.+ ..++.++..+.....+.. .........+...+++.++
T Consensus 77 ~~~~~~---~~--~~~v~~~~~spdg~~l~~~~~~-----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~spdg~~la 143 (360)
T d1k32a3 77 KAEKFE---EN--LGNVFAMGVDRNGKFAVVANDR-----FEIMTVDLETGKPTVIER---SREAMITDFTISDNSRFIA 143 (360)
T ss_dssp CEEECC---CC--CCSEEEEEECTTSSEEEEEETT-----SEEEEEETTTCCEEEEEE---CSSSCCCCEEECTTSCEEE
T ss_pred cEEEee---CC--CceEEeeeecccccccceeccc-----cccccccccccceeeeee---cccccccchhhccceeeee
Confidence 776543 11 1111222222 45666666644 478899998877655542 1122222233334566666
Q ss_pred EeccCC-----CcccCeEEEEECCCCcEEEe
Q 006334 246 IGGVGD-----KHYYNDIWILNVSTCSWSQL 271 (650)
Q Consensus 246 ~GG~~~-----~~~~~dv~~yD~~t~~W~~l 271 (650)
+++... ......++.||+.+..=..+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~ 174 (360)
T d1k32a3 144 YGFPLKHGETDGYVMQAIHVYDMEGRKIFAA 174 (360)
T ss_dssp EEEEECSSTTCSCCEEEEEEEETTTTEEEEC
T ss_pred eeccccccceeeccccceeeeccccCceeee
Confidence 554332 22334588899988754443
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.08 E-value=4.4 Score=37.16 Aligned_cols=105 Identities=12% Similarity=0.102 Sum_probs=56.6
Q ss_pred cCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeeecCEEEEEeccCCCCccCeEEEEECCCC
Q 006334 137 GDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSL 216 (650)
Q Consensus 137 ~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~ 216 (650)
.++..++.|+.+ ..+.+||..+......- ......-.++..++.+++.|+.+ ..+..||..+.
T Consensus 211 ~~~~~~~~~~~d-------~~i~i~d~~~~~~~~~~-----~~h~~~v~~~~~~~~~l~~~~~d-----g~i~iwd~~~~ 273 (355)
T d1nexb2 211 HERKRCISASMD-------TTIRIWDLENGELMYTL-----QGHTALVGLLRLSDKFLVSAAAD-----GSIRGWDANDY 273 (355)
T ss_dssp TTTTEEEEEETT-------SCEEEEETTTCCEEEEE-----CCCSSCCCEEEECSSEEEEECTT-----SEEEEEETTTC
T ss_pred ccceeeeccccc-------ceEEeeecccccccccc-----ccccccccccccccceeeeeecc-----ccccccccccc
Confidence 344555555542 24777887765443211 11111123445566777777765 36888998876
Q ss_pred cEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCcE
Q 006334 217 TWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCSW 268 (650)
Q Consensus 217 ~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W 268 (650)
.-...... .......+...++++++.|. + +.+.+||+++++.
T Consensus 274 ~~~~~~~~----~~~~~~~~~~~~~~~l~~g~-d-----~~i~vwd~~tg~~ 315 (355)
T d1nexb2 274 SRKFSYHH----TNLSAITTFYVSDNILVSGS-E-----NQFNIYNLRSGKL 315 (355)
T ss_dssp CEEEEEEC----TTCCCCCEEEECSSEEEEEE-T-----TEEEEEETTTCCB
T ss_pred ceeccccc----CCceEEEEEcCCCCEEEEEe-C-----CEEEEEECCCCCE
Confidence 53322211 11222334455666666543 2 3689999988764
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=92.02 E-value=0.78 Score=42.57 Aligned_cols=144 Identities=13% Similarity=0.100 Sum_probs=72.7
Q ss_pred EEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee-cCEEEEEeccCCCCccCeEEEE
Q 006334 133 ATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI-ANRLFVYGGDCGDQYHGDIDML 211 (650)
Q Consensus 133 ~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~-~~~Iyv~GG~~~~~~~n~v~~y 211 (650)
.+...++.++++|+.+ ..+.+||+.+.+...+.... ....-.+++.. ++..++.|+.+ ..+..|
T Consensus 142 ~~~s~~~~~l~~g~~d-------g~i~~~d~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~d-----~~i~~~ 206 (299)
T d1nr0a2 142 VALSNDKQFVAVGGQD-------SKVHVYKLSGASVSEVKTIV---HPAEITSVAFSNNGAFLVATDQS-----RKVIPY 206 (299)
T ss_dssp EEECTTSCEEEEEETT-------SEEEEEEEETTEEEEEEEEE---CSSCEEEEEECTTSSEEEEEETT-----SCEEEE
T ss_pred cccccccccccccccc-------cccccccccccccccccccc---ccccccccccccccccccccccc-----cccccc
Confidence 3334467778888763 35888898877655433111 11111122222 34566666644 368899
Q ss_pred ECCCCcEEEeeecCCCCCcccceEEEE--ECCEEEEEeccCCCcccCeEEEEECCCCcEEEeecCCCCCCCcceeEEEEE
Q 006334 212 DMNSLTWSRLAIIGSSPGVRAGHAAIN--IGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVT 289 (650)
Q Consensus 212 d~~t~~W~~i~~~g~~P~~R~~~s~v~--~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~~~~~~p~~R~~hsav~~ 289 (650)
|..+........ ..........++. .++.+++.|+.++ .+.+||+++.....+........ ..-.+++..
T Consensus 207 ~~~~~~~~~~~~--~~~~h~~~v~~l~~s~~~~~l~sgs~dg-----~i~iwd~~~~~~~~~~~~~~~~~-~~v~~~~~~ 278 (299)
T d1nr0a2 207 SVANNFELAHTN--SWTFHTAKVACVSWSPDNVRLATGSLDN-----SVIVWNMNKPSDHPIIIKGAHAM-SSVNSVIWL 278 (299)
T ss_dssp EGGGTTEESCCC--CCCCCSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTCTTSCCEEETTSSTT-SCEEEEEEE
T ss_pred cccccccccccc--cccccccccccccccccccceEEEcCCC-----EEEEEECCCCCcceEEEecCCCC-CcEEEEEEC
Confidence 987765443221 1111112222222 2467777777543 58899998765443322111111 111223334
Q ss_pred CCeEEEEcCC
Q 006334 290 GSDIVIYGGC 299 (650)
Q Consensus 290 ~~~lyV~GG~ 299 (650)
++..++.||.
T Consensus 279 ~~~~l~s~s~ 288 (299)
T d1nr0a2 279 NETTIVSAGQ 288 (299)
T ss_dssp ETTEEEEEET
T ss_pred CCCEEEEEeC
Confidence 5667777774
|
| >d1itva_ b.66.1.1 (A:) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Gelatinase B (MMP-9) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.53 E-value=1.8 Score=39.14 Aligned_cols=150 Identities=11% Similarity=0.115 Sum_probs=80.5
Q ss_pred EEEEECCEEEEEcccCCCcCcCeEEEEECCCCcE-Ee-eecC---CCCCCCCcccEEEEE-cCCEEEEEccccCCCCccc
Q 006334 82 SAILWGHKMIVFGGTNGYKKVNDLHILDLESKEW-MR-PECR---GAPPSPRESHTATLV-GDDKMVIFGGSGEGEANYL 155 (650)
Q Consensus 82 sa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W-~~-l~~~---~~~P~~R~~hs~~~~-~~~~Lyv~GG~~~~~~~~~ 155 (650)
+++.++|.+|+|-| ..+|+|+...... .. ..++ ..+| ..--++... .++++|+|-|.
T Consensus 11 Av~~~~G~~y~Fkg-------~~ywr~~~~~~~~~~~P~~I~~~w~glp--~~IDAAf~~~~~~k~yfFkg~-------- 73 (195)
T d1itva_ 11 AIAEIGNQLYLFKD-------GKYWRFSEGRGSRPQGPFLIADKWPALP--RKLDSVFEEPLSKKLFFFSGR-------- 73 (195)
T ss_dssp EEEEETTEEEEEET-------TEEEEECCSSSCCCEEEEEHHHHCTTSC--SSCSEEEECTTTCCEEEEETT--------
T ss_pred eEEEeCCEEEEEEC-------CEEEEEeCCCCCcCCCcEEeeeecCCCC--CCccEEEEECCCCEEEEEecC--------
Confidence 35677999999987 4678886543322 10 0011 1222 222333323 25789998664
Q ss_pred ceEEEEecCCCce-eeccccCCCCCC--CCcceeeeecCEEEEEeccCCCCccCeEEEEECCCCcEEE-----eee-cCC
Q 006334 156 NDLHVLDLKTMRW-ASPAVKGDIPVP--RDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSR-----LAI-IGS 226 (650)
Q Consensus 156 ~dv~~yd~~t~~W-t~i~~~~~lP~~--R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~-----i~~-~g~ 226 (650)
.+|+|+-.+-.. ..+... .+|.. ....+...-++++|+|=| +..|+||..++.-.. |.. -..
T Consensus 74 -~~~~y~~~~~~~Pk~i~~~-g~p~~~~~idaa~~~~~g~~Y~FkG-------~~y~ryd~~~~~v~~gyPk~i~~~w~g 144 (195)
T d1itva_ 74 -QVWVYTGASVLGPRRLDKL-GLGADVAQVTGALRSGRGKMLLFSG-------RRLWRFDVKAQMVDPRSASEVDRMFPG 144 (195)
T ss_dssp -EEEEEETTEEEEEEEGGGG-TCCTTCCCCCEEEECSTTEEEEEET-------TEEEEEETTTTEECGGGCEEHHHHSTT
T ss_pred -EEEEEcCccccCCEEhhhc-CCCCCchheeeEEEcCCCeEEEEec-------cEEEEEeCCcccccCCCccchhhhcCC
Confidence 377886432111 122211 23322 223333333679999977 578999988764221 110 011
Q ss_pred CCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCC
Q 006334 227 SPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTC 266 (650)
Q Consensus 227 ~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~ 266 (650)
+| ..-.++...++++|+|-| ..-|+||..+.
T Consensus 145 vp--~~idaAf~~~~~~Yffkg-------~~y~r~~~~~~ 175 (195)
T d1itva_ 145 VP--LDTHDVFQFREKAYFCQD-------RFYWRVSSRSE 175 (195)
T ss_dssp SC--SSCSEEEEETTEEEEEET-------TEEEEEECCTT
T ss_pred CC--CCCcEEEEeCCcEEEEEC-------CEEEEEcCCce
Confidence 22 223455667889999976 35788886654
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=91.33 E-value=5 Score=36.95 Aligned_cols=66 Identities=11% Similarity=0.110 Sum_probs=40.6
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-C-CEEEEEcccCCCcCcCeEEEEECCCCc
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW-G-HKMIVFGGTNGYKKVNDLHILDLESKE 114 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~-~-~~lyVfGG~~~~~~~ndv~~yD~~t~~ 114 (650)
+++.++.++.+ +.+.+||+.+++-...... |....-..+++. + ..+||.+..+ +.++.||+.+.+
T Consensus 7 ~~~~l~~~~~~-----~~v~v~D~~t~~~~~t~~~---~~~~~p~~l~~spDG~~l~v~~~~~-----~~v~~~d~~t~~ 73 (346)
T d1jmxb_ 7 GHEYMIVTNYP-----NNLHVVDVASDTVYKSCVM---PDKFGPGTAMMAPDNRTAYVLNNHY-----GDIYGIDLDTCK 73 (346)
T ss_dssp TCEEEEEEETT-----TEEEEEETTTTEEEEEEEC---SSCCSSCEEEECTTSSEEEEEETTT-----TEEEEEETTTTE
T ss_pred CCcEEEEEcCC-----CEEEEEECCCCCEEEEEEc---CCCCCcceEEECCCCCEEEEEECCC-----CcEEEEeCccCe
Confidence 46667777743 4799999999875432222 222333445543 4 4577766542 578999998875
Q ss_pred E
Q 006334 115 W 115 (650)
Q Consensus 115 W 115 (650)
=
T Consensus 74 ~ 74 (346)
T d1jmxb_ 74 N 74 (346)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=90.96 E-value=6.4 Score=36.89 Aligned_cols=216 Identities=8% Similarity=0.043 Sum_probs=102.7
Q ss_pred eEEEEECCCCcEEEeecCCCCCCCCcceEEEE--ECCEEEEEcccCCCcCcCeEEEEECCCCcEEee-ecCCCCCCCCcc
Q 006334 54 DVLMLNLDTMVWSTLATTGQGPGPRDSHSAIL--WGHKMIVFGGTNGYKKVNDLHILDLESKEWMRP-ECRGAPPSPRES 130 (650)
Q Consensus 54 dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~--~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l-~~~~~~P~~R~~ 130 (650)
.+++||..+..-..+-.. . ...-.++. .++++++.|+.++ .+.+||..+...... .... . ...-
T Consensus 39 ~v~i~~~~~~~~~~~~~~-H----~~~v~~~~~sp~g~~latg~~dg-----~i~iwd~~~~~~~~~~~~~~-~--~~~v 105 (311)
T d1nr0a1 39 SVYTVPVGSLTDTEIYTE-H----SHQTTVAKTSPSGYYCASGDVHG-----NVRIWDTTQTTHILKTTIPV-F--SGPV 105 (311)
T ss_dssp EEEEEETTCSSCCEEECC-C----SSCEEEEEECTTSSEEEEEETTS-----EEEEEESSSTTCCEEEEEEC-S--SSCE
T ss_pred EEEEEECCCCceeEEEcC-C----CCCEEEEEEeCCCCeEeccccCc-----eEeeeeeecccccccccccc-c--cCcc
Confidence 588888876533222111 1 11122222 2677778887754 578888887754221 1111 1 1112
Q ss_pred cEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee--c-CEEEEEeccCCCCccCe
Q 006334 131 HTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI--A-NRLFVYGGDCGDQYHGD 207 (650)
Q Consensus 131 hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~--~-~~Iyv~GG~~~~~~~n~ 207 (650)
.++....++++++.+|.+. ...+.+++.++.+-.. .+......-..+.+ + +.+++.|+.+ ..
T Consensus 106 ~~v~~s~d~~~l~~~~~~~-----~~~~~v~~~~~~~~~~-----~l~~h~~~v~~v~~~~~~~~~l~sgs~d-----~~ 170 (311)
T d1nr0a1 106 KDISWDSESKRIAAVGEGR-----ERFGHVFLFDTGTSNG-----NLTGQARAMNSVDFKPSRPFRIISGSDD-----NT 170 (311)
T ss_dssp EEEEECTTSCEEEEEECCS-----SCSEEEEETTTCCBCB-----CCCCCSSCEEEEEECSSSSCEEEEEETT-----SC
T ss_pred ccccccccccccccccccc-----cccccccccccccccc-----cccccccccccccccccceeeecccccc-----cc
Confidence 2333344667777766431 1235566665543321 11111111122222 2 3456667654 36
Q ss_pred EEEEECCCCcEEEeeecCCCCCcccceEEEEE--CCEEEEEeccCCCcccCeEEEEECCCCcEEEeecCCCCCCCcce--
Q 006334 208 IDMLDMNSLTWSRLAIIGSSPGVRAGHAAINI--GTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFS-- 283 (650)
Q Consensus 208 v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~--~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~~~~~~p~~R~~-- 283 (650)
+..||..+.+-...-. . ......++.. ++++++.|+.+ ..+..||..+..-...-.. ......+
T Consensus 171 i~i~d~~~~~~~~~~~--~---~~~~i~~v~~~p~~~~l~~~~~d-----~~v~~~d~~~~~~~~~~~~--~~~~~~~h~ 238 (311)
T d1nr0a1 171 VAIFEGPPFKFKSTFG--E---HTKFVHSVRYNPDGSLFASTGGD-----GTIVLYNGVDGTKTGVFED--DSLKNVAHS 238 (311)
T ss_dssp EEEEETTTBEEEEEEC--C---CSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTCCEEEECBC--TTSSSCSSS
T ss_pred cccccccccccccccc--c---ccccccccccCcccccccccccc-----ccccccccccccccccccc--ccccccccc
Confidence 8889988765443321 1 1111222333 45666676653 3588899887654332111 1111111
Q ss_pred ---eEEEEE-CCeEEEEcCCCCCCCCCCcEEEEecC
Q 006334 284 ---HAAVVT-GSDIVIYGGCGEDERPLNELLVLQLG 315 (650)
Q Consensus 284 ---hsav~~-~~~lyV~GG~~~~~~~~~d~~~l~l~ 315 (650)
.++++. ++++++.||.+ ..+.++++.
T Consensus 239 ~~V~~~~~s~~~~~l~tgs~D------g~v~iwd~~ 268 (311)
T d1nr0a1 239 GSVFGLTWSPDGTKIASASAD------KTIKIWNVA 268 (311)
T ss_dssp SCEEEEEECTTSSEEEEEETT------SEEEEEETT
T ss_pred ccccccccCCCCCEEEEEeCC------CeEEEEECC
Confidence 122332 56777777742 246666664
|
| >d1gena_ b.66.1.1 (A:) Gelatinase A (MMP-2), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Gelatinase A (MMP-2), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.72 E-value=5.6 Score=35.76 Aligned_cols=153 Identities=16% Similarity=0.166 Sum_probs=80.4
Q ss_pred EEEEECCEEEEEccCCCCcccceEEEEECCCCcE-EEeecCC---CCCCCCcceEEEE--ECCEEEEEcccCCCcCcCeE
Q 006334 32 SACYSHGAVYIFGGCCGGLHFGDVLMLNLDTMVW-STLATTG---QGPGPRDSHSAIL--WGHKMIVFGGTNGYKKVNDL 105 (650)
Q Consensus 32 s~v~~~~~IyvfGG~~~~~~~~dv~~yD~~t~sW-~~l~~~g---~~P~pR~~hsa~~--~~~~lyVfGG~~~~~~~ndv 105 (650)
+++.+++.+|+|=| +.+|+++.....+ ....... ..|... . ++.. .++++|+|-| +.+
T Consensus 17 Av~~~~G~~y~Fkg-------~~~wr~~~~~~~~~~P~~I~~~w~glp~~I-d-AA~~~~~~~~~yffkg-------~~~ 80 (200)
T d1gena_ 17 GIAQIRGEIFFFKD-------RFIWRTVTPRDKPMGPLLVATFWPELPEKI-D-AVYEAPQEEKAVFFAG-------NEY 80 (200)
T ss_dssp EEEEETTEEEEEET-------TEEEEESSTTSCCEEEEEGGGTCTTSCSCC-S-EEEEETTTTEEEEEET-------TEE
T ss_pred EEEecCCeEEEEeC-------CEEEEEcCCCCCCCCcEehhhccCCCCCCc-e-EEEEECCCCeEEEecC-------ceE
Confidence 56667999999977 3567665443322 1122211 112221 1 2222 2678999887 568
Q ss_pred EEEECCCCcE---EeeecCCCCCCCCcccEEEEE-cCCEEEEEccccCCCCcccceEEEEecCCCceee-----cc-ccC
Q 006334 106 HILDLESKEW---MRPECRGAPPSPRESHTATLV-GDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWAS-----PA-VKG 175 (650)
Q Consensus 106 ~~yD~~t~~W---~~l~~~~~~P~~R~~hs~~~~-~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~-----i~-~~~ 175 (650)
|+|+-.+... +.+...+.+.....--++... .++++|+|-|. ..|+||..++.-.. +. .-.
T Consensus 81 ~~y~~~~~~~gyPk~i~~~g~p~~~~~iDAA~~~~~~g~~YfFkg~---------~y~ryd~~~~~vd~~yPk~I~~~w~ 151 (200)
T d1gena_ 81 WIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAGD---------KFWRYNEVKKKMDPGFPKLIADAWN 151 (200)
T ss_dssp EEEETTEECTTCSEEGGGGTCCTTCCCCSEEEEETTTTEEEEEETT---------EEEEEETTTTEECSSCCEEHHHHSS
T ss_pred EEEcCcccccCCCceehhcCCCCCccceeeEEEECCCCeEEEEeCc---------EEEEeccccceeccCcceehhhccC
Confidence 8887433111 122111112111222233333 46899999874 48999987654221 11 011
Q ss_pred CCCCCCCcceeeee--cCEEEEEeccCCCCccCeEEEEECCCCcE
Q 006334 176 DIPVPRDSHSSNVI--ANRLFVYGGDCGDQYHGDIDMLDMNSLTW 218 (650)
Q Consensus 176 ~lP~~R~~hs~v~~--~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W 218 (650)
.+|. .-.++... ++++|+|-| +..++||..+.+.
T Consensus 152 gvp~--~idAAf~~~~~g~~Yff~g-------~~y~r~d~~~~~~ 187 (200)
T d1gena_ 152 AIPD--NLDAVVDLQGGGHSYFFKG-------AYYLKLENQSLKS 187 (200)
T ss_dssp SCCS--SCSEEEECTTTCEEEEEET-------TEEEEEETTEEEE
T ss_pred CCCC--CccEEEEecCCCEEEEEEC-------CEEEEEECCceEE
Confidence 3442 22333333 588999988 6788898765543
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=90.34 E-value=6.1 Score=35.58 Aligned_cols=188 Identities=15% Similarity=0.186 Sum_probs=95.8
Q ss_pred CEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-C-CEEEEEcccCCCcCcCeEEEEECCCCcE
Q 006334 38 GAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW-G-HKMIVFGGTNGYKKVNDLHILDLESKEW 115 (650)
Q Consensus 38 ~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~-~-~~lyVfGG~~~~~~~ndv~~yD~~t~~W 115 (650)
.++||.+..+ +.+.++|+.+++....-..+. .-+.+++. + .+||+.++.+ +.+.+||..+.+-
T Consensus 2 ~~~yV~~~~~-----~~v~v~D~~t~~~~~~i~~g~-----~p~~va~spdG~~l~v~~~~~-----~~i~v~d~~t~~~ 66 (301)
T d1l0qa2 2 TFAYIANSES-----DNISVIDVTSNKVTATIPVGS-----NPMGAVISPDGTKVYVANAHS-----NDVSIIDTATNNV 66 (301)
T ss_dssp EEEEEEETTT-----TEEEEEETTTTEEEEEEECSS-----SEEEEEECTTSSEEEEEEGGG-----TEEEEEETTTTEE
T ss_pred eEEEEEECCC-----CEEEEEECCCCeEEEEEECCC-----CceEEEEeCCCCEEEEEECCC-----CEEEEEECCCCce
Confidence 3677776532 468999999998765433322 22344443 4 4677766532 4799999998764
Q ss_pred EeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeee-cC-EE
Q 006334 116 MRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVI-AN-RL 193 (650)
Q Consensus 116 ~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~-~~-~I 193 (650)
... .+....-+.+....++..+++.+..+ ..+..+|..+++....- ......+.+... ++ .+
T Consensus 67 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~dg~~~ 130 (301)
T d1l0qa2 67 IAT-----VPAGSSPQGVAVSPDGKQVYVTNMAS------STLSVIDTTSNTVAGTV-----KTGKSPLGLALSPDGKKL 130 (301)
T ss_dssp EEE-----EECSSSEEEEEECTTSSEEEEEETTT------TEEEEEETTTTEEEEEE-----ECSSSEEEEEECTTSSEE
T ss_pred eee-----eecccccccccccccccccccccccc------ceeeecccccceeeeec-----cccccceEEEeecCCCee
Confidence 432 11112234444444554444444321 34677787776544321 111112222222 33 44
Q ss_pred EEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEE-C-CEEEEEeccCCCcccCeEEEEECCCCcEEEe
Q 006334 194 FVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINI-G-TKVYIIGGVGDKHYYNDIWILNVSTCSWSQL 271 (650)
Q Consensus 194 yv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~-~-~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l 271 (650)
++.+..+ ..+..++..+........ .. .....++.. + ..+|+.+.. ...++.++.........
T Consensus 131 ~~~~~~~-----~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 195 (301)
T d1l0qa2 131 YVTNNGD-----KTVSVINTVTKAVINTVS--VG---RSPKGIAVTPDGTKVYVANFD-----SMSISVIDTVTNSVIDT 195 (301)
T ss_dssp EEEETTT-----TEEEEEETTTTEEEEEEE--CC---SSEEEEEECTTSSEEEEEETT-----TTEEEEEETTTTEEEEE
T ss_pred eeeeccc-----cceeeeeccccceeeecc--cC---CCceEEEeeccccceeeeccc-----ccccccccccceeeeec
Confidence 4444322 467788887776554331 11 111222222 2 355555322 23566777776665554
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.08 E-value=7.6 Score=36.33 Aligned_cols=185 Identities=13% Similarity=0.042 Sum_probs=89.5
Q ss_pred CCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCC
Q 006334 87 GHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTM 166 (650)
Q Consensus 87 ~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~ 166 (650)
+++.++.|+.++ .+..||+...+.+...... .............++.+++.++.+ ..+..+|..+.
T Consensus 108 dg~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~d-------~~i~~~~~~~~ 173 (337)
T d1gxra_ 108 DGCTLIVGGEAS-----TLSIWDLAAPTPRIKAELT--SSAPACYALAISPDSKVCFSCCSD-------GNIAVWDLHNQ 173 (337)
T ss_dssp TSSEEEEEESSS-----EEEEEECCCC--EEEEEEE--CSSSCEEEEEECTTSSEEEEEETT-------SCEEEEETTTT
T ss_pred CCCEEEEeeccc-----ccccccccccccccccccc--cccccccccccccccccccccccc-------ccccccccccc
Confidence 667777777643 5788888776554321110 011112233333456666666652 24778888776
Q ss_pred ceeeccccCCCCCCCCcceeee-ecCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEE-CCEEE
Q 006334 167 RWASPAVKGDIPVPRDSHSSNV-IANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINI-GTKVY 244 (650)
Q Consensus 167 ~Wt~i~~~~~lP~~R~~hs~v~-~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~-~~~Iy 244 (650)
+-.... ... ...-.++.. .++..++.|+.+ +.+..||+.+.+-...-. .. ..-.+++.. ++.++
T Consensus 174 ~~~~~~---~~~-~~~v~~l~~s~~~~~~~~~~~d-----~~v~i~d~~~~~~~~~~~---~~--~~i~~l~~~~~~~~l 239 (337)
T d1gxra_ 174 TLVRQF---QGH-TDGASCIDISNDGTKLWTGGLD-----NTVRSWDLREGRQLQQHD---FT--SQIFSLGYCPTGEWL 239 (337)
T ss_dssp EEEEEE---CCC-SSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTTEEEEEEE---CS--SCEEEEEECTTSSEE
T ss_pred cccccc---ccc-cccccccccccccccccccccc-----ccccccccccceeecccc---cc--cceEEEEEccccccc
Confidence 543322 111 111112222 245566666654 478889988765322211 11 111222222 35566
Q ss_pred EEeccCCCcccCeEEEEECCCCcEEEeecCCCCCCCcceeEEEEE-CCeEEEEcCCCCCCCCCCcEEEEecC
Q 006334 245 IIGGVGDKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVT-GSDIVIYGGCGEDERPLNELLVLQLG 315 (650)
Q Consensus 245 I~GG~~~~~~~~dv~~yD~~t~~W~~l~~~~~~p~~R~~hsav~~-~~~lyV~GG~~~~~~~~~d~~~l~l~ 315 (650)
+.|+.+ ..+..||+.+..-..... ..... .++.+. ++++++.|+.+ ..+.++++.
T Consensus 240 ~~~~~d-----~~i~i~d~~~~~~~~~~~----~~~~i-~~v~~s~~g~~l~s~s~D------g~i~iwd~~ 295 (337)
T d1gxra_ 240 AVGMES-----SNVEVLHVNKPDKYQLHL----HESCV-LSLKFAYCGKWFVSTGKD------NLLNAWRTP 295 (337)
T ss_dssp EEEETT-----SCEEEEETTSSCEEEECC----CSSCE-EEEEECTTSSEEEEEETT------SEEEEEETT
T ss_pred ceeccc-----cccccccccccccccccc----ccccc-ceEEECCCCCEEEEEeCC------CeEEEEECC
Confidence 666543 358889988776544321 11111 122222 55677776642 235555554
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.81 E-value=8.2 Score=36.30 Aligned_cols=197 Identities=13% Similarity=0.102 Sum_probs=88.4
Q ss_pred CCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CCEEEEEcccCCCcCcCeEEEEECCCCcE
Q 006334 37 HGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW-GHKMIVFGGTNGYKKVNDLHILDLESKEW 115 (650)
Q Consensus 37 ~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~-~~~lyVfGG~~~~~~~ndv~~yD~~t~~W 115 (650)
++.+++.|+.++ .+.++|..+..+........ ..-.++... ++..++.|+.+ ..+..+|..+...
T Consensus 132 ~~~~l~s~~~dg-----~v~i~~~~~~~~~~~~~~h~----~~v~~~~~~~~~~~~~~~~~~-----~~i~~~d~~~~~~ 197 (388)
T d1erja_ 132 DGKFLATGAEDR-----LIRIWDIENRKIVMILQGHE----QDIYSLDYFPSGDKLVSGSGD-----RTVRIWDLRTGQC 197 (388)
T ss_dssp TSSEEEEEETTS-----CEEEEETTTTEEEEEECCCS----SCEEEEEECTTSSEEEEEETT-----SEEEEEETTTTEE
T ss_pred CCCcceeccccc-----cccccccccccccccccccc----ccccccccccccccccccccc-----eeeeeeecccccc
Confidence 355666666543 57888888876654432101 111122222 44455555532 3577888877654
Q ss_pred EeeecCCCCCCCCcccEEEEE-cCCEEEEEccccCCCCcccceEEEEecCCCceeec-cccCCCCCC-CCc-ceeeee-c
Q 006334 116 MRPECRGAPPSPRESHTATLV-GDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASP-AVKGDIPVP-RDS-HSSNVI-A 190 (650)
Q Consensus 116 ~~l~~~~~~P~~R~~hs~~~~-~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i-~~~~~lP~~-R~~-hs~v~~-~ 190 (650)
...... .......... .++.+++.|+.+ +.+.+||..+...... ......... ... .++... +
T Consensus 198 ~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~d-------~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 265 (388)
T d1erja_ 198 SLTLSI-----EDGVTTVAVSPGDGKYIAAGSLD-------RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD 265 (388)
T ss_dssp EEEEEC-----SSCEEEEEECSTTCCEEEEEETT-------SCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTT
T ss_pred cccccc-----ccccccccccCCCCCeEEEEcCC-------CeEEEeecccCccceeeccccccccCCCCCEEEEEECCC
Confidence 432111 1111122222 256677777763 2478888877654331 100000000 111 112222 4
Q ss_pred CEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCC-------CCcccceEEEEE--CCEEEEEeccCCCcccCeEEEE
Q 006334 191 NRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSS-------PGVRAGHAAINI--GTKVYIIGGVGDKHYYNDIWIL 261 (650)
Q Consensus 191 ~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~-------P~~R~~~s~v~~--~~~IyI~GG~~~~~~~~dv~~y 261 (650)
+.+++.|+.+ +.+..||+.+............ ........++.. ++++++.|+.+ ..+.+|
T Consensus 266 ~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~d-----g~i~vw 335 (388)
T d1erja_ 266 GQSVVSGSLD-----RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD-----RGVLFW 335 (388)
T ss_dssp SSEEEEEETT-----SEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETT-----SEEEEE
T ss_pred CCEEEEEECC-----CcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCC-----CEEEEE
Confidence 5566666654 3677888765443221100000 000111122222 45677777654 368899
Q ss_pred ECCCCcEE
Q 006334 262 NVSTCSWS 269 (650)
Q Consensus 262 D~~t~~W~ 269 (650)
|+.+.+-.
T Consensus 336 d~~~~~~~ 343 (388)
T d1erja_ 336 DKKSGNPL 343 (388)
T ss_dssp ETTTCCEE
T ss_pred ECCCCcEE
Confidence 99877543
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=89.39 E-value=7.2 Score=35.04 Aligned_cols=230 Identities=16% Similarity=0.187 Sum_probs=111.6
Q ss_pred eEEEEEC--CEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEE-CC-EEEEEcccCCCcCcCeEE
Q 006334 31 HSACYSH--GAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILW-GH-KMIVFGGTNGYKKVNDLH 106 (650)
Q Consensus 31 hs~v~~~--~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~-~~-~lyVfGG~~~~~~~ndv~ 106 (650)
+.+++.. .+||+-+.. .+.+.+||..++.-...-.. ...-+.+++. ++ .+++.+ ..+ ..+.
T Consensus 35 ~~va~spdG~~l~v~~~~-----~~~i~v~d~~t~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~----~~~~ 99 (301)
T d1l0qa2 35 MGAVISPDGTKVYVANAH-----SNDVSIIDTATNNVIATVPA-----GSSPQGVAVSPDGKQVYVTN-MAS----STLS 99 (301)
T ss_dssp EEEEECTTSSEEEEEEGG-----GTEEEEEETTTTEEEEEEEC-----SSSEEEEEECTTSSEEEEEE-TTT----TEEE
T ss_pred eEEEEeCCCCEEEEEECC-----CCEEEEEECCCCceeeeeec-----cccccccccccccccccccc-ccc----ceee
Confidence 3444442 468876653 24799999998764432222 2222444443 34 455443 322 4577
Q ss_pred EEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCccee
Q 006334 107 ILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSS 186 (650)
Q Consensus 107 ~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~ 186 (650)
.+|..+.+....- .............++..+++.+..+ ..+..++..+....... +....-..+
T Consensus 100 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~dg~~~~~~~~~~------~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 163 (301)
T d1l0qa2 100 VIDTTSNTVAGTV-----KTGKSPLGLALSPDGKKLYVTNNGD------KTVSVINTVTKAVINTV-----SVGRSPKGI 163 (301)
T ss_dssp EEETTTTEEEEEE-----ECSSSEEEEEECTTSSEEEEEETTT------TEEEEEETTTTEEEEEE-----ECCSSEEEE
T ss_pred ecccccceeeeec-----cccccceEEEeecCCCeeeeeeccc------cceeeeeccccceeeec-----ccCCCceEE
Confidence 7888877654421 1112223344444554444444321 34667777766544321 111111222
Q ss_pred eee--cCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEE-E-CCEEEEEeccCCCcccCeEEEEE
Q 006334 187 NVI--ANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAIN-I-GTKVYIIGGVGDKHYYNDIWILN 262 (650)
Q Consensus 187 v~~--~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~-~-~~~IyI~GG~~~~~~~~dv~~yD 262 (650)
+.. +..+|+.+... ..+..++.............. ....++. . ++.+|+.+.. ...+.+++||
T Consensus 164 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~g~~~~v~~~~---~~~~~v~v~D 230 (301)
T d1l0qa2 164 AVTPDGTKVYVANFDS-----MSISVIDTVTNSVIDTVKVEA-----APSGIAVNPEGTKAYVTNVD---KYFNTVSMID 230 (301)
T ss_dssp EECTTSSEEEEEETTT-----TEEEEEETTTTEEEEEEECSS-----EEEEEEECTTSSEEEEEEEC---SSCCEEEEEE
T ss_pred Eeeccccceeeecccc-----cccccccccceeeeecccccC-----Ccceeecccccccccccccc---ceeeeeeeee
Confidence 222 34566554322 356667766666555432111 1112222 2 3466665432 2235699999
Q ss_pred CCCCcEEE-eecCCCCCCCcceeEEEEE-CC-eEEEEcCCCCCCCCCCcEEEEecCC
Q 006334 263 VSTCSWSQ-LDTCGQQPQGRFSHAAVVT-GS-DIVIYGGCGEDERPLNELLVLQLGA 316 (650)
Q Consensus 263 ~~t~~W~~-l~~~~~~p~~R~~hsav~~-~~-~lyV~GG~~~~~~~~~d~~~l~l~~ 316 (650)
+.+.+-.. +.. + ..-.++++. ++ .|||.++.. +.+.++|+..
T Consensus 231 ~~t~~~~~~~~~-~-----~~~~~va~spdg~~l~va~~~~------~~i~v~D~~t 275 (301)
T d1l0qa2 231 TGTNKITARIPV-G-----PDPAGIAVTPDGKKVYVALSFC------NTVSVIDTAT 275 (301)
T ss_dssp TTTTEEEEEEEC-C-----SSEEEEEECTTSSEEEEEETTT------TEEEEEETTT
T ss_pred cCCCeEEEEEcC-C-----CCEEEEEEeCCCCEEEEEECCC------CeEEEEECCC
Confidence 98876433 221 1 112344444 44 477776532 3677777753
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.53 E-value=8.7 Score=34.92 Aligned_cols=234 Identities=11% Similarity=0.010 Sum_probs=109.8
Q ss_pred EECCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEECCCCc
Q 006334 35 YSHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESKE 114 (650)
Q Consensus 35 ~~~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~ 114 (650)
..++.+++.|+.++ .+.+||..+.+....-.. . ...=.++++..+.+++.||.++ .+..++.....
T Consensus 20 ~~~~~~l~tgs~Dg-----~i~vWd~~~~~~~~~l~~-H---~~~V~~l~~s~~~~l~s~s~D~-----~i~iw~~~~~~ 85 (355)
T d1nexb2 20 QFEDNYVITGADDK-----MIRVYDSINKKFLLQLSG-H---DGGVWALKYAHGGILVSGSTDR-----TVRVWDIKKGC 85 (355)
T ss_dssp EEETTEEEEEETTT-----EEEEEETTTTEEEEEEEC-C---SSCEEEEEEETTTEEEEEETTC-----CEEEEETTTTE
T ss_pred EECCCEEEEEeCCC-----eEEEEECCCCcEEEEEEC-C---CCCEEEEEEcCCCEEEEEeccc-----ccccccccccc
Confidence 34555666677543 588899988764332111 1 1111234444555677777644 46777777765
Q ss_pred EEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccc-------cCCCCCCCCc----
Q 006334 115 WMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAV-------KGDIPVPRDS---- 183 (650)
Q Consensus 115 W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~-------~~~lP~~R~~---- 183 (650)
...... ...............++..++.|+.+ ..+.+||+.+..-..... ....+.....
T Consensus 86 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d-------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (355)
T d1nexb2 86 CTHVFE--GHNSTVRCLDIVEYKNIKYIVTGSRD-------NTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV 156 (355)
T ss_dssp EEEEEC--CCSSCEEEEEEEEETTEEEEEEEETT-------SEEEEEECCC-----------CCCEEESCTTTCTTEEEE
T ss_pred cccccc--cccccccccccccccccceeeeecCC-------CcEEEEEccCCceeccccccceeccceeccccccceeee
Confidence 443311 11111222223333445666666653 246667765432111000 0000000000
Q ss_pred ---c----eeeeecCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccC
Q 006334 184 ---H----SSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYN 256 (650)
Q Consensus 184 ---h----s~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~ 256 (650)
| .....++.+++.|..+ ..+..||..+.+..... ...............+..++.|+.+ .
T Consensus 157 ~~~~~~~v~~~~~~~~~~~~~~~d-----~~i~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~d-----~ 223 (355)
T d1nexb2 157 LRGHMASVRTVSGHGNIVVSGSYD-----NTLIVWDVAQMKCLYIL---SGHTDRIYSTIYDHERKRCISASMD-----T 223 (355)
T ss_dssp EECCSSCEEEEEEETTEEEEEETT-----SCEEEEETTTTEEEEEE---CCCSSCEEEEEEETTTTEEEEEETT-----S
T ss_pred eeeccccccccccccceeeeeccc-----ceeeeeecccccceeee---eccccccccccccccceeeeccccc-----c
Confidence 0 1111234455555543 36788898877655443 1112222222233345566666543 3
Q ss_pred eEEEEECCCCcEEEeecCCCCCCCcceeEEEEECCeEEEEcCCCCCCCCCCcEEEEecC
Q 006334 257 DIWILNVSTCSWSQLDTCGQQPQGRFSHAAVVTGSDIVIYGGCGEDERPLNELLVLQLG 315 (650)
Q Consensus 257 dv~~yD~~t~~W~~l~~~~~~p~~R~~hsav~~~~~lyV~GG~~~~~~~~~d~~~l~l~ 315 (650)
.+..||..+......-.. . ...-.++..++++++.|+.+ ..+.++++.
T Consensus 224 ~i~i~d~~~~~~~~~~~~---h--~~~v~~~~~~~~~l~~~~~d------g~i~iwd~~ 271 (355)
T d1nexb2 224 TIRIWDLENGELMYTLQG---H--TALVGLLRLSDKFLVSAAAD------GSIRGWDAN 271 (355)
T ss_dssp CEEEEETTTCCEEEEECC---C--SSCCCEEEECSSEEEEECTT------SEEEEEETT
T ss_pred eEEeeecccccccccccc---c--cccccccccccceeeeeecc------ccccccccc
Confidence 588899888765443211 1 11113445567777777743 245556654
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.41 E-value=4.9 Score=38.54 Aligned_cols=142 Identities=11% Similarity=0.178 Sum_probs=75.2
Q ss_pred EEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCC-Ccceeeee-cCEEEEEeccCCCCccCeEEEE
Q 006334 134 TLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPR-DSHSSNVI-ANRLFVYGGDCGDQYHGDIDML 211 (650)
Q Consensus 134 ~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R-~~hs~v~~-~~~Iyv~GG~~~~~~~n~v~~y 211 (650)
+...++.++++|+.+ ..+.+||..++++..+.. +..-. .-.++... ++.+++.||.+ ..+.++
T Consensus 14 ~~s~dg~~la~~~~~-------~~i~iw~~~~~~~~~~~~---l~gH~~~V~~l~fsp~~~~l~s~s~D-----~~i~vW 78 (371)
T d1k8kc_ 14 AWNKDRTQIAICPNN-------HEVHIYEKSGNKWVQVHE---LKEHNGQVTGVDWAPDSNRIVTCGTD-----RNAYVW 78 (371)
T ss_dssp EECTTSSEEEEECSS-------SEEEEEEEETTEEEEEEE---EECCSSCEEEEEEETTTTEEEEEETT-----SCEEEE
T ss_pred EECCCCCEEEEEeCC-------CEEEEEECCCCCEEEEEE---ecCCCCCEEEEEECCCCCEEEEEECC-----CeEEEE
Confidence 333467778887753 358889998888876542 11111 11122222 45666667654 368889
Q ss_pred ECCCCcEEEeeecCCCCCcccceEEEEE--CCEEEEEeccCCCcccCeEEEEECCCCcEEEeecCCCCCCCcceeEEEE-
Q 006334 212 DMNSLTWSRLAIIGSSPGVRAGHAAINI--GTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLDTCGQQPQGRFSHAAVV- 288 (650)
Q Consensus 212 d~~t~~W~~i~~~g~~P~~R~~~s~v~~--~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~~~~~~p~~R~~hsav~- 288 (650)
|+.+..|...... ........++.+ +++.++.|+.+. .-.+|.++.....|...... ...+..-.++.
T Consensus 79 d~~~~~~~~~~~~---~~~~~~v~~i~~~p~~~~l~~~s~d~---~i~i~~~~~~~~~~~~~~~~---~~~~~~v~~v~~ 149 (371)
T d1k8kc_ 79 TLKGRTWKPTLVI---LRINRAARCVRWAPNEKKFAVGSGSR---VISICYFEQENDWWVCKHIK---KPIRSTVLSLDW 149 (371)
T ss_dssp EEETTEEEEEEEC---CCCSSCEEEEEECTTSSEEEEEETTS---SEEEEEEETTTTEEEEEEEC---TTCCSCEEEEEE
T ss_pred eeccccccccccc---ccccccccccccccccccceeecccC---cceeeeeecccccccccccc---cccccccccccc
Confidence 9989999876532 111222223333 456666665432 23466666666666654432 11111112222
Q ss_pred E-CCeEEEEcCC
Q 006334 289 T-GSDIVIYGGC 299 (650)
Q Consensus 289 ~-~~~lyV~GG~ 299 (650)
. ++.+++.|+.
T Consensus 150 ~p~~~~l~s~s~ 161 (371)
T d1k8kc_ 150 HPNSVLLAAGSC 161 (371)
T ss_dssp CTTSSEEEEEET
T ss_pred cccccceecccc
Confidence 2 4567777764
|
| >d1qhua1 b.66.1.1 (A:24-215) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Hemopexin species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=86.53 E-value=8 Score=34.42 Aligned_cols=142 Identities=13% Similarity=0.131 Sum_probs=73.4
Q ss_pred EEEEEcCCEEEEEccccCCCCcccceEEEEec-----CCCceeeccccCCCCCCCCcceeeeecCEEEEEeccCCCCccC
Q 006334 132 TATLVGDDKMVIFGGSGEGEANYLNDLHVLDL-----KTMRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQYHG 206 (650)
Q Consensus 132 s~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~-----~t~~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~~~~~n 206 (650)
+++...++.+|+|=|.. +|+++. .+..|. .+|... ..+...-++++|+|-| +
T Consensus 12 Av~~~~~G~~y~Fkg~~---------~wr~~~~~p~~Is~~Wp------glp~~I-DAaf~~~~~~~yfFkG-------~ 68 (192)
T d1qhua1 12 ATTLDDNGTMLFFKDEF---------VWKSHRGIRELISERWK------NFIGPV-DAAFRHGHTSVYLIKG-------D 68 (192)
T ss_dssp EEEECTTSCEEEEETTE---------EEETTTTEEEEHHHHST------TCCSCC-SEEEEETTTEEEEEET-------T
T ss_pred EEEECCCCcEEEEeCCE---------EEEcCCCCeeEHhhhcC------CCCCCc-cEEEEcCCCcEEEEeC-------C
Confidence 34443578999996642 333322 123454 344322 2222233579999988 6
Q ss_pred eEEEEECCCCcEE---Eeee-cCCCCCcccceEEEE-----ECCEEEEEeccCCCcccCeEEEEECCCCcEEEeecCCCC
Q 006334 207 DIDMLDMNSLTWS---RLAI-IGSSPGVRAGHAAIN-----IGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLDTCGQQ 277 (650)
Q Consensus 207 ~v~~yd~~t~~W~---~i~~-~g~~P~~R~~~s~v~-----~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~~~~~~ 277 (650)
..|+|+-.+...- .|.. -..+|. ...++... .++++|+|-| +..|+||..+..=..- .-..+
T Consensus 69 ~yw~y~~~~~~~gyPk~i~~~~~glp~-~iDAA~~~~~~~~~~~~~yfFkg-------~~yw~yd~~~~~~~~~-~w~gi 139 (192)
T d1qhua1 69 KVWVYTSEKNEKVYPKSLQDEFPGIPF-PLDAAVECHRGECQDEGILFFQG-------NRKWFWDLTTGTKKER-SWPAV 139 (192)
T ss_dssp EEEEECC-------CEEHHHHSTTCCS-SCCEEEEECBBTBSSSEEEEEET-------TEEEEEETTTTEEEEE-CCTTS
T ss_pred EEEEEeCCccccCCCcChHHhCCCCCC-CceEEEEccccccCCCeEEEEeC-------CeEEEEeCCCCCcccc-cccCc
Confidence 7888875443331 1111 012221 12222222 2579999976 4689999988741111 00112
Q ss_pred CCCcceeEEEEECCeEEEEcCCCCCCCCCCcEEEEecCC
Q 006334 278 PQGRFSHAAVVTGSDIVIYGGCGEDERPLNELLVLQLGA 316 (650)
Q Consensus 278 p~~R~~hsav~~~~~lyV~GG~~~~~~~~~d~~~l~l~~ 316 (650)
| .. .+++..++.+|+|-| +..|+++...
T Consensus 140 p--~~-daA~~~~g~~YfFkg--------~~y~r~~~~~ 167 (192)
T d1qhua1 140 G--NC-TSALRWLGRYYCFQG--------NQFLRFNPVS 167 (192)
T ss_dssp C--CC-SEEEEETTEEEEEET--------TEEEEECTTT
T ss_pred C--Cc-ceeEEeCCcEEEEEC--------CEEEEEcCCc
Confidence 2 22 355567899999966 4677776653
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=85.60 E-value=15 Score=34.41 Aligned_cols=182 Identities=13% Similarity=0.087 Sum_probs=91.6
Q ss_pred EECCEEEEEccCCCCcccceEEEEECCCCcEEEeecCC-CCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEECCCC
Q 006334 35 YSHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTG-QGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESK 113 (650)
Q Consensus 35 ~~~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g-~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~ 113 (650)
.-++.+++... +.+++||+.+++++.+.... ..+.-|.....+--+|+||+---. .......-..|....+
T Consensus 67 ~~dg~l~va~~-------~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~-~~~~~~~g~l~~~~~g 138 (295)
T d2ghsa1 67 ISDSKQLIASD-------DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMG-RKAETGAGSIYHVAKG 138 (295)
T ss_dssp EETTEEEEEET-------TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEE-TTCCTTCEEEEEEETT
T ss_pred ecCCCEEEEEe-------CccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEecc-ccccccceeEeeecCC
Confidence 34677776321 36999999999998875431 122234444444446788774322 2222233344444456
Q ss_pred cEEeeecCCCCCCCCcccEEEEEcCC-EEEEEccccCCCCcccceEEEEecCCC--ceeecc-ccCCCCCCCCc-ceeee
Q 006334 114 EWMRPECRGAPPSPRESHTATLVGDD-KMVIFGGSGEGEANYLNDLHVLDLKTM--RWASPA-VKGDIPVPRDS-HSSNV 188 (650)
Q Consensus 114 ~W~~l~~~~~~P~~R~~hs~~~~~~~-~Lyv~GG~~~~~~~~~~dv~~yd~~t~--~Wt~i~-~~~~lP~~R~~-hs~v~ 188 (650)
+.+.+... -......+...++ .+|+..-. .+.+++|+++.. .+..-. .....+..... ..+++
T Consensus 139 ~~~~~~~~-----~~~~Ng~~~s~d~~~l~~~dt~-------~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~v 206 (295)
T d2ghsa1 139 KVTKLFAD-----ISIPNSICFSPDGTTGYFVDTK-------VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVC 206 (295)
T ss_dssp EEEEEEEE-----ESSEEEEEECTTSCEEEEEETT-------TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEE
T ss_pred cEEEEeec-----cCCcceeeecCCCceEEEeecc-------cceeeEeeecccccccccceEEEeccCcccccccceEE
Confidence 55554211 1112333433344 46664321 356888876432 111100 00011111111 12222
Q ss_pred -ecCEEEEE--eccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEEC----CEEEEEecc
Q 006334 189 -IANRLFVY--GGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIG----TKVYIIGGV 249 (650)
Q Consensus 189 -~~~~Iyv~--GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~----~~IyI~GG~ 249 (650)
-++.||+. +| ..+.+||++......+. +|..+ .+++.++ +.|||....
T Consensus 207 D~~GnlWva~~~~-------g~V~~~dp~G~~~~~i~----lP~~~--~T~~~FGG~d~~~LyvTta~ 261 (295)
T d2ghsa1 207 DAEGHIWNARWGE-------GAVDRYDTDGNHIARYE----VPGKQ--TTCPAFIGPDASRLLVTSAR 261 (295)
T ss_dssp CTTSCEEEEEETT-------TEEEEECTTCCEEEEEE----CSCSB--EEEEEEESTTSCEEEEEEBC
T ss_pred cCCCCEEeeeeCC-------CceEEecCCCcEeeEec----CCCCc--eEEEEEeCCCCCEEEEEECC
Confidence 35678876 33 47999999988888886 34333 4455553 478887543
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.71 E-value=16 Score=34.00 Aligned_cols=152 Identities=11% Similarity=0.075 Sum_probs=71.4
Q ss_pred CEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCC-CCcccEEEEEc-CCEEEEEccccCCCCcccceEEEEecCC
Q 006334 88 HKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPS-PRESHTATLVG-DDKMVIFGGSGEGEANYLNDLHVLDLKT 165 (650)
Q Consensus 88 ~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~-~R~~hs~~~~~-~~~Lyv~GG~~~~~~~~~~dv~~yd~~t 165 (650)
..+++.||.++ .+..||..+.+-.... ..... ...-.++.... .+.+++.||.+ ..+.+||..+
T Consensus 172 ~~~~~~~~~d~-----~v~~~d~~~~~~~~~~--~~~~~~~~~v~~v~~~pd~~~~l~s~~~d-------~~i~iwd~~~ 237 (325)
T d1pgua1 172 PMRSMTVGDDG-----SVVFYQGPPFKFSASD--RTHHKQGSFVRDVEFSPDSGEFVITVGSD-------RKISCFDGKS 237 (325)
T ss_dssp SCEEEEEETTT-----EEEEEETTTBEEEEEE--CSSSCTTCCEEEEEECSTTCCEEEEEETT-------CCEEEEETTT
T ss_pred cceEEEeeccc-----ccccccccccccceec--ccccCCCCccEEeeeccccceeccccccc-------cceeeeeecc
Confidence 34566666543 4677887655432211 11111 11112222222 25677777763 2488899887
Q ss_pred CceeeccccCCCCCCCCcceeeeecCEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEE
Q 006334 166 MRWASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYI 245 (650)
Q Consensus 166 ~~Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI 245 (650)
++....-.....+.....++....+++.++.|+.+ ..+.+||+.+.+-...-............++...++..++
T Consensus 238 ~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 312 (325)
T d1pgua1 238 GEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGAD-----ATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRII 312 (325)
T ss_dssp CCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETT-----SEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEE
T ss_pred ccccccccccccccccceeeeeccCCCEEEEEeCC-----CeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEE
Confidence 66432110111111111222223456777777765 3688899988764332211111111112223333444556
Q ss_pred EeccCCCcccCeEEEEEC
Q 006334 246 IGGVGDKHYYNDIWILNV 263 (650)
Q Consensus 246 ~GG~~~~~~~~dv~~yD~ 263 (650)
.|+.+ ..+.+||+
T Consensus 313 s~s~d-----g~i~vwdl 325 (325)
T d1pgua1 313 SLSLD-----GTLNFYEL 325 (325)
T ss_dssp EEETT-----SCEEEEET
T ss_pred EEECC-----CEEEEEEC
Confidence 66653 24666664
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=82.61 E-value=5 Score=38.26 Aligned_cols=156 Identities=6% Similarity=-0.010 Sum_probs=84.4
Q ss_pred CCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCC
Q 006334 87 GHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTM 166 (650)
Q Consensus 87 ~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~ 166 (650)
+++||+.- .....++++|+.++........ ....-+++++..+++|||..-.+ ......+..++..+.
T Consensus 50 ~G~Ly~~D-----~~~g~I~ri~p~g~~~~~~~~~----~~~~p~gla~~~dG~l~va~~~~---~~~~~~i~~~~~~~~ 117 (319)
T d2dg1a1 50 QGQLFLLD-----VFEGNIFKINPETKEIKRPFVS----HKANPAAIKIHKDGRLFVCYLGD---FKSTGGIFAATENGD 117 (319)
T ss_dssp TSCEEEEE-----TTTCEEEEECTTTCCEEEEEEC----SSSSEEEEEECTTSCEEEEECTT---SSSCCEEEEECTTSC
T ss_pred CCCEEEEE-----CCCCEEEEEECCCCeEEEEEeC----CCCCeeEEEECCCCCEEEEecCC---CccceeEEEEcCCCc
Confidence 46788863 2235799999998865543211 11223455555678999864221 112345777887776
Q ss_pred ceeeccccCCCC-CCCCcceeeeecCEEEEEecc-CCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEE--CCE
Q 006334 167 RWASPAVKGDIP-VPRDSHSSNVIANRLFVYGGD-CGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINI--GTK 242 (650)
Q Consensus 167 ~Wt~i~~~~~lP-~~R~~hs~v~~~~~Iyv~GG~-~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~--~~~ 242 (650)
....+.. ... ..+.+-.++.-++.+|+-.-. ........+++++++...++.+... ... ...++.. ++.
T Consensus 118 ~~~~~~~--~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~--~~~---pnGia~s~dg~~ 190 (319)
T d2dg1a1 118 NLQDIIE--DLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN--ISV---ANGIALSTDEKV 190 (319)
T ss_dssp SCEEEEC--SSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE--ESS---EEEEEECTTSSE
T ss_pred eeeeecc--CCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeec--cce---eeeeeeccccce
Confidence 6544321 111 112222223335778875321 1123345799999988877776531 111 1122332 346
Q ss_pred EEEEeccCCCcccCeEEEEECCCC
Q 006334 243 VYIIGGVGDKHYYNDIWILNVSTC 266 (650)
Q Consensus 243 IyI~GG~~~~~~~~dv~~yD~~t~ 266 (650)
||+.- ...+.+++||+...
T Consensus 191 lyvad-----~~~~~I~~~d~~~~ 209 (319)
T d2dg1a1 191 LWVTE-----TTANRLHRIALEDD 209 (319)
T ss_dssp EEEEE-----GGGTEEEEEEECTT
T ss_pred EEEec-----ccCCceEEEEEcCC
Confidence 88873 34567999998654
|
| >d1hxna_ b.66.1.1 (A:) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Hemopexin species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=82.11 E-value=7.6 Score=35.13 Aligned_cols=107 Identities=21% Similarity=0.204 Sum_probs=54.7
Q ss_pred ECCEEEEEcccCCCcCcCeEEEEECCCCcEEeeecCCCCCC-CCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecC
Q 006334 86 WGHKMIVFGGTNGYKKVNDLHILDLESKEWMRPECRGAPPS-PRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLK 164 (650)
Q Consensus 86 ~~~~lyVfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~-~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~ 164 (650)
.+|.+|+|-| +.+|+++.....|....+....|. +..--++... ++++|+|-|. ..|+|...
T Consensus 18 ~~G~~y~Fkg-------~~~wr~~~~~~~~~p~~I~~~W~~lp~~IDAA~~~-~~~~yfFkG~---------~y~~y~~~ 80 (210)
T d1hxna_ 18 NHGATYVFSG-------SHYWRLDTNRDGWHSWPIAHQWPQGPSTVDAAFSW-EDKLYLIQDT---------KVYVFLTK 80 (210)
T ss_dssp TTSCEEEEET-------TEEEESSSSSCTTCCEEGGGTCTTSCSSCSEEEEE-TTEEEEEETT---------EEEEEECS
T ss_pred CCCCEEEEEC-------CEEEEEcCCCCCCCcccHHHhcCCCCcccceEEEe-CCeEEEEecC---------EEEEEEcC
Confidence 4789999977 456666655444432222212111 1222233434 6899999774 47888543
Q ss_pred C-Ccee-----ecc-ccCCCCC---CCCcceeee-ecCEEEEEeccCCCCccCeEEEEECCCC
Q 006334 165 T-MRWA-----SPA-VKGDIPV---PRDSHSSNV-IANRLFVYGGDCGDQYHGDIDMLDMNSL 216 (650)
Q Consensus 165 t-~~Wt-----~i~-~~~~lP~---~R~~hs~v~-~~~~Iyv~GG~~~~~~~n~v~~yd~~t~ 216 (650)
+ .+-. .+. ..+..+. .+...+.+. .++++|+|-| +..|+||..+.
T Consensus 81 ~~~~~~~GyPk~i~~~~g~p~~~~~~~IDAA~~~~~~gk~yffkG-------~~y~ryd~~~~ 136 (210)
T d1hxna_ 81 GGYTLVNGYPKRLEKELGSPPVISLEAVDAAFVCPGSSRLHIMAG-------RRLWWLDLKSG 136 (210)
T ss_dssp SSCEECTTCCEEHHHHHCCCSSCCCSCCCEEECCTTCCEEEEEET-------TEEEEEEGGGG
T ss_pred CCcCccCCCCcChhhccCCCCCCCCCcEeEEEEeCCCCEEEEEEC-------CEEEEEcCCcC
Confidence 2 1110 011 0011111 112222222 2589999988 67899997653
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.07 E-value=20 Score=33.22 Aligned_cols=70 Identities=16% Similarity=0.130 Sum_probs=40.4
Q ss_pred CEEEEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCcEEE
Q 006334 191 NRLFVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQ 270 (650)
Q Consensus 191 ~~Iyv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~ 270 (650)
+.+++.||.+ +.+..||..+.+....-.....+.....++....++++++.|+.++ .+.+||+++++-..
T Consensus 218 ~~~l~s~~~d-----~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~-----~i~iwd~~~~~~~~ 287 (325)
T d1pgua1 218 GEFVITVGSD-----RKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADA-----TIRVWDVTTSKCVQ 287 (325)
T ss_dssp CCEEEEEETT-----CCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTS-----EEEEEETTTTEEEE
T ss_pred ceeccccccc-----cceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCC-----eEEEEECCCCCEEE
Confidence 5677777765 4688999887764332111111111122333335667777777543 58889999876433
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=81.67 E-value=8.9 Score=39.91 Aligned_cols=124 Identities=15% Similarity=0.183 Sum_probs=67.9
Q ss_pred EEECCEEEEEcccCCCcCcCeEEEEECCCCc--EEeeecCCC-----CCCCCcccEEEEEcCCEEEEEccccCCCCcccc
Q 006334 84 ILWGHKMIVFGGTNGYKKVNDLHILDLESKE--WMRPECRGA-----PPSPRESHTATLVGDDKMVIFGGSGEGEANYLN 156 (650)
Q Consensus 84 ~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~~--W~~l~~~~~-----~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~ 156 (650)
++.+++||+... .+.++.+|.+|.+ |+.-..... ........+.++. ++++|+... -.
T Consensus 74 iv~~g~vyv~t~------~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~v~~~t~--------~g 138 (573)
T d1kb0a2 74 VVVDGIMYVSAS------WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW-KGKVYVGAW--------DG 138 (573)
T ss_dssp EEETTEEEEECG------GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE-TTEEEEECT--------TS
T ss_pred EEECCEEEEECC------CCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE-CCcEEEEec--------cc
Confidence 567999998654 3569999999874 874200000 0011111223333 678776422 13
Q ss_pred eEEEEecCCCc--eeeccccCCCCCCCCcceeeeecCEEEEEeccCCCCccCeEEEEECCCCc--EEEee
Q 006334 157 DLHVLDLKTMR--WASPAVKGDIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDMLDMNSLT--WSRLA 222 (650)
Q Consensus 157 dv~~yd~~t~~--Wt~i~~~~~lP~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~yd~~t~~--W~~i~ 222 (650)
.++.+|.++.+ |+.-........-......+++++.+|+-+..........+..||..+.+ |+.-.
T Consensus 139 ~l~alda~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t 208 (573)
T d1kb0a2 139 RLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFS 208 (573)
T ss_dssp EEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred ceeeeccccccceecccCccCCcceEEeecceEEEeccEEEeeccccccccceEEEEecCCccceeeeee
Confidence 58888887764 76422111111111223345667877764332233345689999999876 77543
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=80.78 E-value=9.1 Score=39.85 Aligned_cols=121 Identities=17% Similarity=0.167 Sum_probs=69.4
Q ss_pred CCEEEEEccccCCCCcccceEEEEecCCC--ceeeccccC-----CCCCCCCcceeeeecCEEEEEeccCCCCccCeEEE
Q 006334 138 DDKMVIFGGSGEGEANYLNDLHVLDLKTM--RWASPAVKG-----DIPVPRDSHSSNVIANRLFVYGGDCGDQYHGDIDM 210 (650)
Q Consensus 138 ~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~--~Wt~i~~~~-----~lP~~R~~hs~v~~~~~Iyv~GG~~~~~~~n~v~~ 210 (650)
++.||+.... +.++.+|.++. .|+.-.... ...........++.++++|+... -..++.
T Consensus 77 ~g~vyv~t~~--------~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~t~------~g~l~a 142 (573)
T d1kb0a2 77 DGIMYVSASW--------SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW------DGRLIA 142 (573)
T ss_dssp TTEEEEECGG--------GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT------TSEEEE
T ss_pred CCEEEEECCC--------CeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEECCcEEEEec------ccceee
Confidence 7899986543 35888898876 476421000 00111223345567888887532 247899
Q ss_pred EECCCCc--EEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCc--EEEee
Q 006334 211 LDMNSLT--WSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCS--WSQLD 272 (650)
Q Consensus 211 yd~~t~~--W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~--W~~l~ 272 (650)
+|..+.+ |+.-...+.........+.+++++.+||-+..........|..||.++.+ |+.-.
T Consensus 143 lda~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t 208 (573)
T d1kb0a2 143 LDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFS 208 (573)
T ss_dssp EETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred eccccccceecccCccCCcceEEeecceEEEeccEEEeeccccccccceEEEEecCCccceeeeee
Confidence 9988775 76543111111112233446678877664333333445679999999976 77543
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.33 E-value=18 Score=31.54 Aligned_cols=226 Identities=10% Similarity=0.121 Sum_probs=107.9
Q ss_pred EEECCEEEEEccCCCCcccceEEEEECCCCcEEEeecCCCCCCCCcceEEEEECCEEEEEcccCCCcCcCeEEEEECCCC
Q 006334 34 CYSHGAVYIFGGCCGGLHFGDVLMLNLDTMVWSTLATTGQGPGPRDSHSAILWGHKMIVFGGTNGYKKVNDLHILDLESK 113 (650)
Q Consensus 34 v~~~~~IyvfGG~~~~~~~~dv~~yD~~t~sW~~l~~~g~~P~pR~~hsa~~~~~~lyVfGG~~~~~~~ndv~~yD~~t~ 113 (650)
+..++..++-|+.++ .+.++|..+.+....-.. ....-.++..++++++.||.++ .+..++....
T Consensus 21 ~~~d~~~l~sgs~Dg-----~i~vWd~~~~~~~~~l~~-----H~~~V~~v~~~~~~l~s~s~D~-----~i~~~~~~~~ 85 (293)
T d1p22a2 21 LQYDDQKIVSGLRDN-----TIKIWDKNTLECKRILTG-----HTGSVLCLQYDERVIITGSSDS-----TVRVWDVNTG 85 (293)
T ss_dssp EECCSSEEEEEESSS-----CEEEEESSSCCEEEEECC-----CSSCEEEEECCSSEEEEEETTS-----CEEEEESSSC
T ss_pred EEEcCCEEEEEeCCC-----eEEEEECCCCcEEEEEec-----CCCCEeeeecccceeecccccc-----cccccccccc
Confidence 345677777787654 577889887765443211 1111223345777788887644 5777888877
Q ss_pred cEEeeecCCCCCCCCcccEEEEEcCCEEEEEccccCCCCcccceEEEEecCCCceeeccccCCCCCCCCcceeeeecCEE
Q 006334 114 EWMRPECRGAPPSPRESHTATLVGDDKMVIFGGSGEGEANYLNDLHVLDLKTMRWASPAVKGDIPVPRDSHSSNVIANRL 193 (650)
Q Consensus 114 ~W~~l~~~~~~P~~R~~hs~~~~~~~~Lyv~GG~~~~~~~~~~dv~~yd~~t~~Wt~i~~~~~lP~~R~~hs~v~~~~~I 193 (650)
........ ............+.+ +.++.. ..+..+|..+..-..... ..................
T Consensus 86 ~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~-------~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~ 150 (293)
T d1p22a2 86 EMLNTLIH-----HCEAVLHLRFNNGMM-VTCSKD-------RSIAVWDMASPTDITLRR--VLVGHRAAVNVVDFDDKY 150 (293)
T ss_dssp CEEEEECC-----CCSCEEEEECCTTEE-EEEETT-------SCEEEEECSSSSCCEEEE--EECCCSSCEEEEEEETTE
T ss_pred cccccccc-----cccccccccccccce-eecccc-------cceeEeeccccccccccc--cccccccccccceecccc
Confidence 66553111 111122222223333 333331 234556654432111000 111111111122222333
Q ss_pred EEEeccCCCCccCeEEEEECCCCcEEEeeecCCCCCcccceEEEEECCEEEEEeccCCCcccCeEEEEECCCCcEEEeec
Q 006334 194 FVYGGDCGDQYHGDIDMLDMNSLTWSRLAIIGSSPGVRAGHAAINIGTKVYIIGGVGDKHYYNDIWILNVSTCSWSQLDT 273 (650)
Q Consensus 194 yv~GG~~~~~~~n~v~~yd~~t~~W~~i~~~g~~P~~R~~~s~v~~~~~IyI~GG~~~~~~~~dv~~yD~~t~~W~~l~~ 273 (650)
.+.++.+ ..+..+|..+.+-...-. .. ......+..++..++.|+.++ .+.+||+.+........
T Consensus 151 ~~~~s~d-----~~i~~~d~~~~~~~~~~~--~~---~~~v~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~ 215 (293)
T d1p22a2 151 IVSASGD-----RTIKVWNTSTCEFVRTLN--GH---KRGIACLQYRDRLVVSGSSDN-----TIRLWDIECGACLRVLE 215 (293)
T ss_dssp EEEEETT-----SEEEEEETTTCCEEEEEE--CC---SSCEEEEEEETTEEEEEETTS-----CEEEEETTTCCEEEEEC
T ss_pred cccccCC-----CceeeecCCCCcEEEEEc--cc---ccccccccCCCCeEEEecCCC-----EEEEEecccceeeeeec
Confidence 3333333 468888987765432211 11 112223334455566666543 57889998877655432
Q ss_pred CCCCCCCcceeEEEEECCeEEEEcCCCCCCCCCCcEEEEecC
Q 006334 274 CGQQPQGRFSHAAVVTGSDIVIYGGCGEDERPLNELLVLQLG 315 (650)
Q Consensus 274 ~~~~p~~R~~hsav~~~~~lyV~GG~~~~~~~~~d~~~l~l~ 315 (650)
. ..........+...++.|+.+ ..+.++++.
T Consensus 216 ~-----~~~~v~~~~~~~~~l~sg~~d------g~i~iwd~~ 246 (293)
T d1p22a2 216 G-----HEELVRCIRFDNKRIVSGAYD------GKIKVWDLV 246 (293)
T ss_dssp C-----CSSCEEEEECCSSEEEEEETT------SCEEEEEHH
T ss_pred c-----cceeeeeccccceEEEEEcCC------CEEEEEECC
Confidence 1 111123344466677777643 345666654
|