Citrus Sinensis ID: 006353

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------65

MGAIKLELRCPQKVDGIAIDPEPDWSFDALLSELNSLETRLNASSKPVPFTKTKSREISTGKSVESNARAFVIRVSDDELENDNERKGEEVHNGSLVAVKRFTCDALYLSESDDSDDDVALGGESYLMDEVGLADGALVELTHQHQLGVKEEIRNLISTLETQLISENEQSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDAAYEEAKRKERALQEEKIRQEKVKAEAEAKLRAEEAKRAALEAEKRAAKEAAEREAAENSKRITAGVSQDGACGRQPDDSSVIAGAQSRGSRSDGTKKLQSAVRATESALNIEQKRLQKLKELDEENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQTEIPGVQNAHGLKEGWAWLARFLNALPANIYTAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFLNALKAREDSKLNLVIAEIQYYIEDKKFLEEPEGRTLQAPPLSSTLVPEADYQEYGRYHQYQEYGYQYH

ccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccHHHHHccccHHHHHHHcccccccHHHHHHHHHHHHHHHcccHHHHHcccccccccccccccHHHHHHcccccHHHHHHHHcHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHccEEcccccccccccccccHHHHHHHHcEEccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHccccccc

ccEEEEEcccccccccEEEcccccccHHHHHHHHHHHHHHHccccccccccccccccccccccEcccccEEEEEEccccccccccccccccccEEEEccccccccccEcccccccccHcccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccEEEEccccccccccccHHHHHHHcccEccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccccccccccHHHccccccccccccccccccccEcc

mgaiklelrcpqkvdgiaidpepdwSFDALLSELNSLETrlnasskpvpftktksreistgksvesNARAFVIRVsddelendnerkgeevhngsLVAVKRFTCDalylsesddsdddvalggesylmdevglADGALVELTHQHQLGVKEEIRNLISTLETQLISENEQSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDAAYEEAKRKERALQEEKIRQEKVKAEAEAKLRAEEAKRAALEAEKRAAKEAAEREAAENSkritagvsqdgacgrqpddssviagaqsrgsrsdgTKKLQSAVRATESALNIEQKRLQKLKELDEEnqslklssnedfsgyEKDISRLIRQIRGLKDNVRTKASELVKIlnnplcpqsislaTFSKKVVsrcetpddnvamSCGYVIVLVASQVPQVMDILLGEFHRAciytvpkhivfseaaFESEEAYYKTIGyreedgkiESLENYLSRLKSYMRLYAALIQTeipgvqnahgLKEGWAWLARFLNALPANIYTAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFLNALKAREDSKLNLVIAEIQYYIEDkkfleepegrtlqapplsstlvpeadyqeygryhqyqeygyqyh

MGAIKLELRCPQKVDGIAIDPEPDWSFDALLSELNSLEtrlnasskpvpftktksreistgksvesnarafvirvsddelendnerkgeevhngslvavKRFTCDALYLSESDDSDDDVALGGESYLMDEVGLADGALVELTHQHQLGVKEEIRNLISTLETqliseneqsnsalaqvekdrdmrremdrKNDTVYQRKIAEaldnhltavqrdhelksqieerkirsdaayeEAKRKERALQEEKIRQEKVKAEAEAKLRAEEAKRAALEAEKRAAKEAAereaaenskritagvsqdgacgrqPDDSSVIagaqsrgsrsdgtkKLQSAVRATESALNIEQKRLQKLKEldeenqslklssnedfsgyeKDISRLIRQIRGLKDNVRTKASELVKilnnplcpqsiSLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIgyreedgkieSLENYLSRLKSYMRLYAALIQTEIPGVQNAHGLKEGWAWLARFLNALPANIYTAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFLNALKAREDSKLNLVIAEIQYYIEDKKfleepegrtlqapplsstlvpEADYQEYGRYHQYQEYGYQYH

MGAIKLELRCPQKVDGIAIDPEPDWSFDALLSELNSLETRLNASSKPVPFTKTKSREISTGKSVESNARAFVIRVSDDELENDNERKGEEVHNGSLVAVKRFTCDALYLSEsddsdddVALGGESYLMDEVGLADGALVELTHQHQLGVKEEIRNLISTLETQLISENEQSNSALAQVekdrdmrremdrkndTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDaayeeakrkeraLQEEKIRQEKVkaeaeaklraeeakraaleaekraakeaaereaaeNSKRITAGVSQDGACGRQPDDSSVIAGAQSRGSRSDGTKKLQSAVRATESALNIEQKRLQKLKELDEENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVfseaafeseeaYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQTEIPGVQNAHGLKEGWAWLARFLNALPANIYTAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFLNALKAREDSKLNLVIAEIQYYIEDKKFLEEPEGRTLQAPPLSSTLVPEADyqeygryhqyqeygyqyh

*******LRCPQKVDGIAIDPEPDWSFDALL**************************************************************GSLVAVKRFTCDALYLS********VALGGESYLMDEVGLADGALVELTHQHQLGVKEEIRNLISTLET******************************************************************************************************************************************************************************************************************DISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQTEIPGVQNAHGLKEGWAWLARFLNALPANIYTAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFLNALKAREDSKLNLVIAEIQYYIEDKKFL********************ADYQEYGRYHQYQEYGY***

*******LRCPQKVDGIAIDPEPDWSFDA***************************************************************************************************************************************************************************************************************************************************************************************************************RATESALNIEQKRLQKLKEL*************************************************PLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSEAA*ESEEAYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQTEIPG*QNAHGLKEGWAWLARFLNALPANIYTAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFLN**************AEIQYYIEDKKFLE*********************YQEYGRYHQYQ*YGY***

MGAIKLELRCPQKVDGIAIDPEPDWSFDALLSELNSLETRLNASS******************VESNARAFVIRVSDDELENDNERKGEEVHNGSLVAVKRFTCDALYLSESDDSDDDVALGGESYLMDEVGLADGALVELTHQHQLGVKEEIRNLISTLETQLISENEQSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDA***********LQEEKIRQEKVKAEAEAKLRAE****************************ITAGVSQDGACGRQPDDSSV************************ESALNIEQKRLQKLKELDEENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQTEIPGVQNAHGLKEGWAWLARFLNALPANIYTAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFLNALKAREDSKLNLVIAEIQYYIEDKKFLEEPEGRTLQAPPLSSTLVPEADYQEYGRYHQYQEYGYQYH

*GAIKLELRCPQKVDGIAIDPEPDWSFDALLSELNSLETRLNA***********************NARAFV***S**************VHNGSLVAVKRFTCDALYLSES*DSDD*VALGGESYLMDEVGLADGALVELTHQHQLGVKEEIRNLISTLETQLISENEQSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDAAYEEAKRKERAL*****R*EKVKAE*****************************************************SSVIAGAQSRGSRSDGTKKLQSAVRATESALNIEQKRLQKLKELDEENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQTEIPGVQNAHGLKEGWAWLARFLNALPANIYTAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFLNALKAREDSKLNLVIAEIQYYIEDKKFLEEPEGRTLQAPPLSSTLVPEADYQEYGRYHQYQEYGYQYH

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MGAIKLELRCPQKVDGIAIDPEPDWSFDALLSELNSLETRLNASSKPVPFTKTKSREISTGKSVESNARAFVIRVSDDELENDNERKGEEVHNGSLVAVKRFTCDALYLSESDDSDDDVALGGESYLMDEVGLADGALVELTHQHQLGVxxxxxxxxxxxxxxxxxxxxxSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDAAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKRITAGVSQDGACGRQPDDSSVIAGAQSRGSRSDGTKKLQSAxxxxxxxxxxxxxxxxxxxxxDEENQSLKLSSNEDxxxxxxxxxxxxxxxxxxxxxVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQTEIPGVQNAHGLKEGWAWLARFLNALPANIYTAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFLNALKAREDSKLNLVIAEIQYYIEDKKFLEEPEGRTLQAPPLSSTLVPEADYQEYGRYHQYQEYGYQYH

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		649	2.2.26 [Sep-21-2011]
Q5RAS2		698	Nucleoporin GLE1 OS=Pongo	yes	no	0.263	0.244	0.352	1e-25
Q53GS7		698	Nucleoporin GLE1 OS=Homo	yes	no	0.263	0.244	0.352	1e-25
Q8R322		699	Nucleoporin GLE1 OS=Mus m	yes	no	0.263	0.244	0.358	2e-25
Q4KLN4		698	Nucleoporin GLE1 OS=Rattu	no	no	0.263	0.244	0.352	3e-25
Q3ZBK7		698	Nucleoporin GLE1 OS=Bos t	yes	no	0.263	0.244	0.342	2e-24
Q6DRB1		695	Nucleoporin GLE1 OS=Danio	yes	no	0.268	0.250	0.326	3e-23
Q9V4W1		677	Nucleoporin GLE1 OS=Droso	yes	no	0.309	0.296	0.283	4e-15

>sp\|Q5RAS2\|GLE1_PONAB Nucleoporin GLE1 OS=Pongo abelii GN=GLE1 PE=2 SV=1	Back alignment and function desciption

 Score =  119 bits (297), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 66/187 (35%), Positives = 104/187 (55%), Gaps = 16/187 (8%)

Query: 433 GYVIVLVASQV----PQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREE 488
            + I +VAS +    P+V D++L   H+ C Y+VP +  F E    + E Y + +GY+ +
Sbjct: 499 AFPIAVVASGIWELHPRVGDLILAHLHKKCPYSVPFYPTFKEGM--ALEDYQRMLGYQVK 556

Query: 489 DGKIESLENYLSRLKSYMRLYAALIQTEIPGVQ----NAHGLKEGWAWLARFLNALPANI 544
           D K+E  +N+L R+   +RLYAA+IQ   P       + HGL  GW WLA+ LN  P + 
Sbjct: 557 DSKVEQQDNFLKRMSGMIRLYAAIIQLRWPYGNRQEIHPHGLNHGWRWLAQILNMEPLSD 616

Query: 545 YTAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFLNALKAREDSKLNLVIAEIQYYIE 604
            TA  L  FL++ G AL K+Y+ QF K+L  I +++   ++A   S       ++  +I 
Sbjct: 617 VTATLLFDFLEVCGNALMKQYQVQFWKMLILIKEDYFPRIEAITSS------GQMGSFIR 670

Query: 605 DKKFLEE 611
            K+FLE+
Sbjct: 671 LKQFLEK 677

Required for the export of mRNAs containing poly(A) tails from the nucleus into the cytoplasm. May be involved in the terminal step of the mRNA transport through the nuclear pore complex (NPC).
Pongo abelii (taxid: 9601)

>sp\|Q53GS7\|GLE1_HUMAN Nucleoporin GLE1 OS=Homo sapiens GN=GLE1 PE=1 SV=2	Back alignment and function description

>sp\|Q8R322\|GLE1_MOUSE Nucleoporin GLE1 OS=Mus musculus GN=Gle1 PE=2 SV=2	Back alignment and function description

>sp\|Q4KLN4\|GLE1_RAT Nucleoporin GLE1 OS=Rattus norvegicus GN=Gle1 PE=2 SV=1	Back alignment and function description

>sp\|Q3ZBK7\|GLE1_BOVIN Nucleoporin GLE1 OS=Bos taurus GN=GLE1 PE=2 SV=1	Back alignment and function description

>sp\|Q6DRB1\|GLE1_DANRE Nucleoporin GLE1 OS=Danio rerio GN=gle1 PE=2 SV=2	Back alignment and function description

>sp\|Q9V4W1\|GLE1_DROME Nucleoporin GLE1 OS=Drosophila melanogaster GN=GLE1 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		649
296081385		701	unnamed protein product [Vitis vinifera]	0.970	0.898	0.609	0.0
359473158		680	PREDICTED: uncharacterized protein LOC10	0.969	0.925	0.606	0.0
147859341		745	hypothetical protein VITISV_036820 [Viti	0.975	0.849	0.584	0.0
255547998		613	Nucleoporin GLE1, putative [Ricinus comm	0.929	0.983	0.596	0.0
356538127		629	PREDICTED: uncharacterized protein LOC10	0.909	0.937	0.537	1e-172
449435436		641	PREDICTED: uncharacterized protein LOC10	0.970	0.982	0.547	1e-170
357463209		599	Nucleoporin GLE1 [Medicago truncatula] g	0.859	0.931	0.515	1e-156
15222184		611	embryo defective 1745 protein [Arabidops	0.919	0.977	0.477	1e-148
297849694		614	EMB1745 [Arabidopsis lyrata subsp. lyrat	0.915	0.967	0.478	1e-146
4850395		635	EST gb\|N37870 comes from this gene [Arab	0.930	0.951	0.466	1e-145

>gi\|296081385\|emb\|CBI16818.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score =  750 bits (1936), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/658 (60%), Positives = 490/658 (74%), Gaps = 28/658 (4%)

Query: 1   MGAIKLELRCPQKVDGI-AIDPEPDWSFDALLSELNSLETRLNASSK-PVPFTKTKSREI 58
           MGA+KLELRCPQ  +GI A DPEPDWSF+AL+SELNSLE +LN+SS  P+PFTKT+SR +
Sbjct: 40  MGAVKLELRCPQNENGIIAADPEPDWSFEALVSELNSLELKLNSSSIFPIPFTKTESRGL 99

Query: 59  STGKSVESNARAFVIRVSDDELENDNERKG--EEVHNGSLVAVKRFTCDALYLSESDDSD 116
           S   +V+    AFV+RVSDDE+E D ER+G  E V++ SLVA  RF CD LYLS   DSD
Sbjct: 100 S---NVKKGPTAFVMRVSDDEME-DVEREGGVEGVYDRSLVAGSRFACDELYLS---DSD 152

Query: 117 DDVALGGESYLMDEVGLADGALVELTHQHQLGVKEEIRNLISTLETQLISENEQSNSALA 176
           D+  L  + +LMD+ G+A+GA  ELTH+HQL VKEE+R  IS LET L  E ++S SA+ 
Sbjct: 153 DESNLHDQFHLMDKAGVAEGAFFELTHEHQLAVKEEVRTQISVLETDLTHERKKSTSAIV 212

Query: 177 QVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDAAYEEAK 236
           +VEK  + RREMDRK D  YQR IAEALDNH+TAVQRDHE +SQIEER+IR++AA+EEA 
Sbjct: 213 RVEKYIEARREMDRKLDIQYQRNIAEALDNHMTAVQRDHEHRSQIEERRIRNEAAFEEA- 271

Query: 237 RKERALQEEKIRQEKVKAEAEAKL------RAEEAKRAALEAEKRAAKEAAEREAAENSK 290
           RKE+ALQEEK+RQEK KAEA+ +L      RAEEAK AALE E+RAAKEAAERE    S 
Sbjct: 272 RKEKALQEEKLRQEKAKAEAKVRLELAAKKRAEEAKIAALEDERRAAKEAAEREGIGAST 331

Query: 291 RITAGVSQDGACGRQPDDSSVIAGAQSRGSRSDGTKKLQSA---VRATESALNIEQKRLQ 347
           R    V+   A G Q D S  I  AQ  GS++DGTKK QSA   +++ ESAL +EQ+RLQ
Sbjct: 332 RAATEVAPKEATGHQRDASLGILNAQLNGSKTDGTKKAQSAGNILKSAESALKLEQERLQ 391

Query: 348 KLKELDEENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQS 407
           K KE DE+ Q+L  SSN+DF  +E+  +R IRQI G K+NVRTK + L+K+ N+PLCPQ 
Sbjct: 392 KYKEFDEKTQALGQSSNKDFQRHEQQFARRIRQISGSKENVRTKGNALIKMFNDPLCPQP 451

Query: 408 ISLATFSKKVVSRCETPDDN-VAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHI 466
           I++A F KKVVS  E    + V  +CG+VIV VASQVP  MD+LL E HR CIYTVPKHI
Sbjct: 452 INVAIFVKKVVSYFEVDQPSKVTYACGHVIVFVASQVPYAMDLLLAELHRVCIYTVPKHI 511

Query: 467 VFSEAAFESEEAYYKTIGYREEDGKIESLENYLSRLKSYMRLYAALIQTEIPGVQNAHGL 526
            +S++AF+S+E YYK IGYREE+GKIE  E+YL RL  YM+LYAAL+QTE  GV+N HGL
Sbjct: 512 DYSKSAFKSKEDYYKMIGYREENGKIERTEDYLKRLACYMKLYAALVQTEADGVKNPHGL 571

Query: 527 KEGWAWLARFLNALPANIYTAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFLNALKA 586
           KEGWAWLARFLNALPAN+YTAVAL  FLQ+AGFALF+KY+SQFRKIL  I  NFL ALKA
Sbjct: 572 KEGWAWLARFLNALPANVYTAVALEVFLQVAGFALFRKYRSQFRKILKVISGNFLVALKA 631

Query: 587 R----EDSKLNLVIAEIQYYIEDKKFLEEPEGRTLQAPPLSSTLVPEADYQEYGRYHQ 640
           +    ++ KL  VI  IQYY+E  +FL+EPEG  +Q   LS ++ PE DY +   YH 
Sbjct: 632 QGEKVKEPKLKQVIGNIQYYVEKNEFLQEPEGWRMQGSLLSGSMAPELDYPD--SYHH 687

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359473158\|ref\|XP_002282194.2\| PREDICTED: uncharacterized protein LOC100245667 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147859341\|emb\|CAN81849.1\| hypothetical protein VITISV_036820 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255547998\|ref\|XP_002515056.1\| Nucleoporin GLE1, putative [Ricinus communis] gi\|223546107\|gb\|EEF47610.1\| Nucleoporin GLE1, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|356538127\|ref\|XP_003537556.1\| PREDICTED: uncharacterized protein LOC100802744 [Glycine max]	Back alignment and taxonomy information

>gi\|449435436\|ref\|XP_004135501.1\| PREDICTED: uncharacterized protein LOC101216938 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|357463209\|ref\|XP_003601886.1\| Nucleoporin GLE1 [Medicago truncatula] gi\|355490934\|gb\|AES72137.1\| Nucleoporin GLE1 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|15222184\|ref\|NP_172771.1\| embryo defective 1745 protein [Arabidopsis thaliana] gi\|110737727\|dbj\|BAF00802.1\| hypothetical protein [Arabidopsis thaliana] gi\|332190851\|gb\|AEE28972.1\| embryo defective 1745 protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297849694\|ref\|XP_002892728.1\| EMB1745 [Arabidopsis lyrata subsp. lyrata] gi\|297338570\|gb\|EFH68987.1\| EMB1745 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|4850395\|gb\|AAD31065.1\|AC007357_14 EST gb\|N37870 comes from this gene [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		649
TAIR\|locus:2031835		611	GLE1 [Arabidopsis thaliana (ta	0.369	0.392	0.435	6.5e-122
UNIPROTKB\|B3KMG0		444	GLE1 "Nucleoporin GLE1" [Homo	0.400	0.585	0.290	5e-20
UNIPROTKB\|F1RR80		698	GLE1 "Uncharacterized protein"	0.449	0.418	0.282	7.1e-20
UNIPROTKB\|E2RSW4		697	GLE1 "Uncharacterized protein"	0.460	0.428	0.289	2e-19
UNIPROTKB\|Q53GS7		698	GLE1 "Nucleoporin GLE1" [Homo	0.400	0.372	0.290	2e-19
RGD\|1310843		697	Gle1-ps1 "GLE1 RNA export medi	0.314	0.292	0.327	4.2e-19
MGI\|MGI:1921662		699	Gle1 "GLE1 RNA export mediator	0.406	0.377	0.290	4.3e-19
ZFIN\|ZDB-GENE-040831-4		717	gle1 "GLE1 RNA export mediator	0.272	0.246	0.335	4.3e-19
RGD\|1307329		698	Gle1 "GLE1 RNA export mediator	0.445	0.414	0.282	5.3e-19
UNIPROTKB\|Q3ZBK7		698	GLE1 "Nucleoporin GLE1" [Bos t	0.406	0.378	0.286	1.5e-18

TAIR\|locus:2031835 GLE1 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 488 (176.8 bits), Expect = 6.5e-122, Sum P(3) = 6.5e-122
 Identities = 112/257 (43%), Positives = 157/257 (61%)

Query:     1 MGAIKLELRCPQKVDGIAIDPEPDWSFDALLSELNSLETRLNASSK-PVPFTKTKSREIS 59
             MG + LE  CP+ VDGI+IDPEP+W+F++L++E+ S+E +LN  S  P P T T  R   
Sbjct:     1 MGIV-LEPPCPKSVDGISIDPEPNWNFESLVAEIASVEKKLNGFSMYPQPITNTTLR--- 56

Query:    60 TGKSVESNARAFVIRVSDDELEND-----NERKGEEVHNGSLVAVKRFTCDALYLSEXXX 114
              G+        FV+ VS+DE+E+D     ++ + EE H+    A KRF CD LYLS+   
Sbjct:    57 MGR----RGGGFVMHVSEDEMESDEGEESDDEEEEEDHSQICTAGKRFACDELYLSDESD 112

Query:   115 XXXXVALGGESYLMDEVGLADGALVELTHQHQLGVKEEIRNLISTLETQLISENEQSNSA 174
                        Y+M+++GLA+ AL E+ + HQ  +K++IRN +S +ET++++E E S SA
Sbjct:   113 EEFDHE---PEYMMNKLGLAESALYEVINDHQTEIKDDIRNQVSVVETEIMNEIETSLSA 169

Query:   175 LAQVXXXXXXXXXXXXXXXTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDXXXXX 234
             +A+V                 YQRK+AEALD HLTAVQR+H++KSQIEERKIRS+     
Sbjct:   170 IARVEKYSETRKEVERKLDLQYQRKVAEALDTHLTAVQREHKIKSQIEERKIRSEEAQEE 229

Query:   235 XXXXXXXLQEEKIRQEK 251
                     QEEKIRQEK
Sbjct:   230 ARRKERAHQEEKIRQEK 246

GO:0005634 "nucleus" evidence=ISM

GO:0005643 "nuclear pore" evidence=IEA

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0005635 "nuclear envelope" evidence=IDA

GO:0006312 "mitotic recombination" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

GO:0048316 "seed development" evidence=IMP

UNIPROTKB\|B3KMG0 GLE1 "Nucleoporin GLE1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RR80 GLE1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RSW4 GLE1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|Q53GS7 GLE1 "Nucleoporin GLE1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

RGD\|1310843 Gle1-ps1 "GLE1 RNA export mediator homolog (yeast), pseudogene 1" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

MGI\|MGI:1921662 Gle1 "GLE1 RNA export mediator (yeast)" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-040831-4 gle1 "GLE1 RNA export mediator homolog (yeast)" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

RGD\|1307329 Gle1 "GLE1 RNA export mediator homolog (yeast)" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|Q3ZBK7 GLE1 "Nucleoporin GLE1" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00030727001	SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (517 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		649
pfam07817		249	pfam07817, GLE1, GLE1-like protein	3e-71
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	1e-06
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-06
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-06
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-06
TIGR02794		346	TIGR02794, tolA_full, TolA protein	1e-05
PRK09510		387	PRK09510, tolA, cell envelope integrity inner memb	3e-05
PRK09510		387	PRK09510, tolA, cell envelope integrity inner memb	4e-05
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	1e-04
COG3064		387	COG3064, TolA, Membrane protein involved in colici	1e-04
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-04
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-04
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-04
PRK00409		782	PRK00409, PRK00409, recombination and DNA strand e	5e-04
PRK05035		695	PRK05035, PRK05035, electron transport complex pro	5e-04
PRK12704		520	PRK12704, PRK12704, phosphodiesterase; Provisional	8e-04
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	9e-04
COG3064		387	COG3064, TolA, Membrane protein involved in colici	0.001
PRK05306		746	PRK05306, infB, translation initiation factor IF-2	0.002
PTZ00121		2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.003
COG5269		379	COG5269, ZUO1, Ribosome-associated chaperone zuoti	0.003

>gnl\|CDD\|219595 pfam07817, GLE1, GLE1-like protein	Back alignment and domain information

 Score =  230 bits (588), Expect = 3e-71
 Identities = 89/261 (34%), Positives = 129/261 (49%), Gaps = 21/261 (8%)

Query: 328 LQSAVRATESALNIEQKRLQKLKELDEENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDN 387
            ++ +   +SA+ +   R  +LK+L    +          S     ++R+  ++  L   
Sbjct: 1   YKNKIEQIKSAVKLPLNRDPELKKLRFTLKRKINPKFGQLSNSSSQLARITNKLSQL--- 57

Query: 388 VRTKASELVKILNNPLCPQSISLATFSKKVVSRCETP---DDNVAMSCGYVIVLVASQVP 444
                  +    N+        L  F+KK+VS+ ET        A     V +L+ SQ P
Sbjct: 58  -------ISVAKNDHPLAYKWILNFFAKKIVSQAETEVAVKPEAAFPLAAVALLLLSQFP 110

Query: 445 QVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYREEDG-KIESLENYLSRLK 503
           +  D+LL   H+ C Y VPKH  ++ +     E   K +GY+  DG K E   +YL R+ 
Sbjct: 111 EFGDLLLARLHKKCPYVVPKHPGYTCSI--DTEDGRKRMGYKRTDGGKWEDETSYLERMA 168

Query: 504 SYMRLYAALIQTEIPGVQNA---HGLKEGWAWLARFLNALPANI--YTAVALNAFLQLAG 558
             MRLYAA+IQTEIPG  N    HGL+ GW WLAR LN  PA +    A  L +FL+ AG
Sbjct: 169 GIMRLYAAIIQTEIPGGSNTTHPHGLEHGWRWLARILNTPPALLTNTHATILASFLEAAG 228

Query: 559 FALFKKYKSQFRKILDNIYDN 579
           FAL +KY  QFRK+L  I ++
Sbjct: 229 FALLRKYGKQFRKLLKVIQED 249

The members of this family are sequences that are similar to the human protein GLE1. This protein is localised at the nuclear pore complexes and functions in poly(A)+ RNA export to the cytoplasm. Length = 249

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|234017 TIGR02794, tolA_full, TolA protein	Back alignment and domain information

>gnl\|CDD\|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional	Back alignment and domain information

>gnl\|CDD\|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	Back alignment and domain information

>gnl\|CDD\|235334 PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	Back alignment and domain information

>gnl\|CDD\|237177 PRK12704, PRK12704, phosphodiesterase; Provisional	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>gnl\|CDD\|235401 PRK05306, infB, translation initiation factor IF-2; Validated	Back alignment and domain information

>gnl\|CDD\|173412 PTZ00121, PTZ00121, MAEBL; Provisional	Back alignment and domain information

>gnl\|CDD\|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		649
KOG2412		591	consensus Nuclear-export-signal (NES)-containing p	100.0
PF07817		256	GLE1: GLE1-like protein; InterPro: IPR012476 The m	100.0
KOG2412		591	consensus Nuclear-export-signal (NES)-containing p	97.83
PTZ00121		2084	MAEBL; Provisional	97.39
KOG1029		1118	consensus Endocytic adaptor protein intersectin [S	96.99
PTZ00266		1021	NIMA-related protein kinase; Provisional	96.83
KOG1029		1118	consensus Endocytic adaptor protein intersectin [S	96.71
COG3064		387	TolA Membrane protein involved in colicin uptake [	96.66
PRK09510		387	tolA cell envelope integrity inner membrane protei	96.35
KOG0163		1259	consensus Myosin class VI heavy chain [Cytoskeleto	96.25
PRK09510		387	tolA cell envelope integrity inner membrane protei	96.24
PTZ00266		1021	NIMA-related protein kinase; Provisional	96.22
PF02854		209	MIF4G: MIF4G domain; InterPro: IPR003890 This entr	96.03
COG3064		387	TolA Membrane protein involved in colicin uptake [	95.91
KOG0163		1259	consensus Myosin class VI heavy chain [Cytoskeleto	95.54
PF05262		489	Borrelia_P83: Borrelia P83/100 protein; InterPro:	93.84
smart00543		200	MIF4G Middle domain of eukaryotic initiation facto	93.29
KOG1144		1064	consensus Translation initiation factor 5B (eIF-5B	93.17
KOG2140		739	consensus Uncharacterized conserved protein [Gener	92.48
KOG0742		630	consensus AAA+-type ATPase [Posttranslational modi	91.94
KOG2002		1018	consensus TPR-containing nuclear phosphoprotein th	87.96
PF09726		697	Macoilin: Transmembrane protein; InterPro: IPR0191	87.21
PF12037		276	DUF3523: Domain of unknown function (DUF3523); Int	86.86
PF05262		489	Borrelia_P83: Borrelia P83/100 protein; InterPro:	86.78
PRK06568		154	F0F1 ATP synthase subunit B; Validated	86.38
KOG4364		811	consensus Chromatin assembly factor-I [Chromatin s	85.73
COG4942		420	Membrane-bound metallopeptidase [Cell division and	85.55
KOG3054		299	consensus Uncharacterized conserved protein [Funct	85.37
KOG4364		811	consensus Chromatin assembly factor-I [Chromatin s	85.04
KOG4661		940	consensus Hsp27-ERE-TATA-binding protein/Scaffold	83.7
KOG3054		299	consensus Uncharacterized conserved protein [Funct	83.14
KOG1144		1064	consensus Translation initiation factor 5B (eIF-5B	81.18

>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]	Back alignment and domain information

Probab=100.00  E-value=2.4e-96  Score=791.24  Aligned_cols=563  Identities=34%  Similarity=0.520  Sum_probs=465.5

Q ss_pred             CCccccccCCCCcccccccCCCCCCCHHHHHHHHHHHHHHhccCC-CCcccccccccccccCccccccccceEEEecccc
Q 006353            1 MGAIKLELRCPQKVDGIAIDPEPDWSFDALLSELNSLETRLNASS-KPVPFTKTKSREISTGKSVESNARAFVIRVSDDE   79 (649)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~dp~p~w~~~~~~~e~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~fv~r~~~~~   79 (649)
                      ||+ .|+..||.+++|++|||+|+|+|.||++++.|.+.+||+++ +|+|+|.++-+.       ++++..|||.|++++
T Consensus         1 e~~-pl~ep~p~s~~~~~id~epn~~fpdl~a~~as~~~~l~~~gk~~~~~t~~~v~d-------~~~~~~~~~~~~e~e   72 (591)
T KOG2412|consen    1 EGI-PLEEPCPKSVDGISIDPEPNWNFPDLVAEIASVEKKLNGFGKYPQPITNTTVRD-------GRRGGGFVMHVSEDE   72 (591)
T ss_pred             CCC-CCCCCCCCCcccccCCCCCCCCchhHHHHhhhhhhhhcccCCCccHHHHHHHHh-------hhccCCccchhHHHH
Confidence            566 89999999999999999999999999999999999999999 999999887776       678999999999999


Q ss_pred             ccccc-----cccccccccCccccccceecccccccCCCCCccccccCCcc-ccccccccchhhhHHhhhhccccchHHH
Q 006353           80 LENDN-----ERKGEEVHNGSLVAVKRFTCDALYLSESDDSDDDVALGGES-YLMDEVGLADGALVELTHQHQLGVKEEI  153 (649)
Q Consensus        80 ~~~~~-----~~~~~~~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~~~~-~l~~~~~~~~~~l~e~~~~~~~~~~e~~  153 (649)
                      ++++.     +...++.+++.+++|++|+|+.||++|.++++    +++++ +.|++.++..+.    .++|++.+..++
T Consensus        73 ~~~~~~~~sq~~l~e~~~s~~~~a~t~m~~~qL~~~~~~~~~----~~~e~~~~l~~L~~~~~~----~~q~~~~~~~~~  144 (591)
T KOG2412|consen   73 MESDEGEESQDELEEEDHSQKCTAGTRMACAQLYLSDESDEE----FDHENEQDLNKLGLKESA----INQRQTEIKSDI  144 (591)
T ss_pred             HHhcccccccCcccCcchhHhhhccchhHHHHHHHHHHhhhh----hhcchhhhHHHHHHhhcc----chhhhHhHHhhh
Confidence            98765     55678899999999999999999999988777    77788 888999999888    489999999999


Q ss_pred             HHHHHHHHHHHhh-hhHHhHHHHHhhHHHHHhHHHhhhhcchHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHhhhHHHH
Q 006353          154 RNLISTLETQLIS-ENEQSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDAAY  232 (649)
Q Consensus       154 r~~~~~le~~~~~-e~~~~~~~~~~~ek~~~~r~E~~r~~~~~~qr~iae~~d~~~~~~~r~~e~~~q~~er~~r~~~a~  232 (649)
                      |.++..+..-..+ ++...++.+..++++-++|.|+.+++ .++|++++..+|+|++.++|++++.+||.+|++++++..
T Consensus       145 ~~ki~~~~~pea~~~~~~n~e~~~l~~~~~e~~~~~~~r~-~e~Q~qv~qsl~~el~~i~~~~q~~eqi~~~~~~~e~kr  223 (591)
T KOG2412|consen  145 RAKILNSPLPEANQEIETNAENIRLVEKLSETRKEVKRRL-LEEQNQVLQSLDTELQAIQREKQRKEQIRERKERSEEKR  223 (591)
T ss_pred             hhhhhcCCChHHHHHHHhhHHHHHhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            9999887766555 77778999999999999999999999 999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCCCCCCCCCCcc
Q 006353          233 EEAKRKERALQEEKIRQEKVKAEAE--AKLRAEEAKRAALEAEKRAAKEAAEREAAENSKRITAGVSQDGACGRQPDDSS  310 (649)
Q Consensus       233 ~ea~~ke~~~~e~~~r~~~~~~~~e--a~~~a~~~~~~a~ea~~~~~~~~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (649)
                      .||.|+++++||++.+.+.+.++++  ++.|++|.|   .|.++|++.++++.+...... ..          .++..+.
T Consensus       224 ~Eaerk~~~~qEe~Rqk~d~~~~~~eqekiR~~eek---qeee~ke~e~~~~k~~q~~~~-~e----------ek~a~qk  289 (591)
T KOG2412|consen  224 EEAERKRRAHQEELRQKEDEEAELQEQEKIRAEEEK---QEEERKEAEEQAEKEVQDPKA-HE----------EKLAEQK  289 (591)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCchh-cc----------ccccccc
Confidence            9999999999988888777655544  566666544   222223322222221110000 00          0011122


Q ss_pred             cccccccCCCCCCcchhhhhhhhccHHHHHHHHHHHHHHHHHHHHH-hhccccccccccccccccccccccccCchhh-H
Q 006353          311 VIAGAQSRGSRSDGTKKLQSAVRATESALNIEQKRLQKLKELDEEN-QSLKLSSNEDFSGYEKDISRLIRQIRGLKDN-V  388 (649)
Q Consensus       311 ~~~~~~~~~~~~d~~~k~~~~~~a~~sal~~~~~rhk~LKelr~~~-~~lks~lkk~~~~~KRqI~~kIGQLSns~~Q-I  388 (649)
                      +..|.+...            +......++.++.++...|.--... +..++.++.-..+++|.||+.|||||++..| |
T Consensus       290 ~~~~~~~~~------------~~~ds~m~w~~~d~i~q~k~d~v~pi~~kd~~lk~~~~~~kr~in~~~~qis~~~~q~L  357 (591)
T KOG2412|consen  290 AVIEKVTTS------------SASDSQMFWNSQDAIAQSKLDLVNPILKKDEELKNYNQSLKRAINPPFSQISKSNGQVL  357 (591)
T ss_pred             cccccccCC------------chhHHHhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCChhhhhhccHHHH
Confidence            222211111            1111112222223333333221111 1123446677779999999999999999988 9


Q ss_pred             HHHHHHHHHHhcCC-----CChHHHHHHHHHHHHHhhhcCC---CCCcchhHHHHHHHHHhhCccHHHHHHHHhccccee
Q 006353          389 RTKASELVKILNNP-----LCPQSISLATFSKKVVSRCETP---DDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIY  460 (649)
Q Consensus       389 ~~Is~eL~~lL~~~-----qlP~~~~Ln~lAKaIVsQaEt~---~~~sAfPLA~V~v~L~~~~Pef~DILLArf~kkCP~  460 (649)
                      ..|++.|.+++++.     ++.|.||+|+|||++|+|+|++   +|.+|||||+|++.||++||+|+|+|||||||+|||
T Consensus       358 ~qI~dkl~s~~~~~~~~~~pl~~~~~~~~iaka~V~Q~Etev~~~PeaAfPla~V~l~i~~q~Pdv~dlllA~l~KkCP~  437 (591)
T KOG2412|consen  358 RQIFDKLDSLFGGIPDIVDPLAYDWCLNFIAKAFVKQAETEVASKPEAAFPLAKVILYIWSQFPDVGDLLLARLHKKCPY  437 (591)
T ss_pred             HHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhCchHHHHHHHHHHhcCCc
Confidence            99999999999864     3458899999999999999994   678999999999999999999999999999999999


Q ss_pred             eccccccccccccccHHHHHHHcCccc-CCCcccchhhHHHHHHHHHHHHHHHHhcCCC----CCCCCCCcchHHHHHHH
Q 006353          461 TVPKHIVFSEAAFESEEAYYKTIGYRE-EDGKIESLENYLSRLKSYMRLYAALIQTEIP----GVQNAHGLKEGWAWLAR  535 (649)
Q Consensus       461 lVP~~~~~~k~~~qTeEey~K~mGYR~-~dG~~Ese~~YlkRMtGI~rLYAAIiqt~~~----~~~nP~gi~~~WkWLAR  535 (649)
                      +||||++.      ++|.|.|+|||+. ++|+||..+.|++||+||+||||||+++++|    +.-||||+.+||.||||
T Consensus       438 ~VPf~~~~------~~Eq~~k~mGyk~~d~nk~Eqnd~YleRm~Gi~rLYAAIi~l~~p~~~~~~~hpf~i~~gW~wLA~  511 (591)
T KOG2412|consen  438 VVPFHIVN------STEQYQKMMGYKAWDSNKWEQNDAYLERMDGIMRLYAAIIQLDIPVGNATNVHPFGINHGWAWLAR  511 (591)
T ss_pred             cccccccC------cHHHHHHhhcccccccccccccchHHHHhHhHHHHHHHHHHhcccccCCCCCCcchhhcccHHHHH
Confidence            99999863      3799999999997 7789999999999999999999999999986    34589999999999999


Q ss_pred             HhCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCCchhHHHHHHHHHHHHhcccccCCC
Q 006353          536 FLNALPANIYTAVALNAFLQLAGFALFKKYKSQFRKILDNIYDNFLNALKAREDSKLNLVIAEIQYYIEDKKFLEEPE  613 (649)
Q Consensus       536 ILN~~P~~~ita~VL~afLevAG~~Ll~~YG~QF~KLL~lI~~df~p~L~~~~~p~~~~~v~rLe~~L~dk~~l~ePE  613 (649)
                      |||+.|.+++||++|.+||++||+.|++.||+||+|||.+|.++|+|++.++++.|.......|+.|+ |.+++..|+
T Consensus       512 iln~~p~~~~tatll~s~Lq~aG~~L~q~Yg~Qf~Klli~i~E~y~~r~~a~~~~g~~rl~ill~~~l-~~q~~~~~~  588 (591)
T KOG2412|consen  512 ILNKIPLLDTTATLLNSFLQTAGFGLLQRYGSQFLKLLILIREHYLPRLAAKKDTGDLRLRILLEAWL-DRQYLKEPE  588 (591)
T ss_pred             HhCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHH-Hhhhhcccc
Confidence            99999999999999999999999999999999999999999999999999997777788899999999 788888887

>PF07817 GLE1: GLE1-like protein; InterPro: IPR012476 The members of this family are sequences that are similar to the human protein GLE1 (O75458 from SWISSPROT)	Back alignment and domain information

>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]	Back alignment and domain information

>PTZ00121 MAEBL; Provisional	Back alignment and domain information

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PTZ00266 NIMA-related protein kinase; Provisional	Back alignment and domain information

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional	Back alignment and domain information

>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]	Back alignment and domain information

>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional	Back alignment and domain information

>PTZ00266 NIMA-related protein kinase; Provisional	Back alignment and domain information

>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain	Back alignment and domain information

>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]	Back alignment and domain information

>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins	Back alignment and domain information

>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G)	Back alignment and domain information

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]	Back alignment and domain information

>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes	Back alignment and domain information

>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised	Back alignment and domain information

>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins	Back alignment and domain information

>PRK06568 F0F1 ATP synthase subunit B; Validated	Back alignment and domain information

>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]	Back alignment and domain information

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	Back alignment and domain information

>KOG3054 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]	Back alignment and domain information

>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]	Back alignment and domain information

>KOG3054 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		649
3pev_B		297	Nucleoporin GLE1; RECA, heat, DEAD-BOX, ATPase, he	6e-53
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-13
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	8e-07
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	3e-05
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-06
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-05
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-05
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-04
2zuo_A		861	MVP, major vault protein; repeat domains, protein-	9e-06
2zuo_A		861	MVP, major vault protein; repeat domains, protein-	1e-05
2zuo_A		861	MVP, major vault protein; repeat domains, protein-	1e-05
2zuo_A		861	MVP, major vault protein; repeat domains, protein-	1e-04
3lvg_D		190	LCB, clathrin light chain B; SELF assembly, coated	2e-04

>3pev_B Nucleoporin GLE1; RECA, heat, DEAD-BOX, ATPase, helicase, mRNA export, nuclear hydrolase; HET: IHP; 2.50A {Saccharomyces cerevisiae} PDB: 3peu_B* 3pex_B* 3pez_B* 3rrm_B* 3rrn_B* Length = 297	Back alignment and structure

 Score =  182 bits (464), Expect = 6e-53
 Identities = 42/267 (15%), Positives = 97/267 (36%), Gaps = 26/267 (9%)

Query: 343 QKRLQKLKELDEENQSLKLSSNEDFSGYEKDISRLIR----QIRGLKDNVRTKASELVKI 398
                K+ ++ ++       ++ +         R I     Q+      +    +EL ++
Sbjct: 13  WHYKDKIAQIKQDIVLPIKKADVNVRNLLSRHKRKINPKFGQLTNSNQQLFKIQNELTQL 72

Query: 399 LNNPLCPQSIS---LATFSKKVVSRCET---PDDNVAMSCGYVIVLVASQVPQVMDILLG 452
           +N+           L   +K VV + ET        A+  G + + +  Q P++ ++ + 
Sbjct: 73  INDTKGDSLAYHWILNFIAKAVVHQAETEVRVKPESALPLGKLTLYLLVQFPELQELFMA 132

Query: 453 EFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYR-EEDGKIESLENYLSRLKSYMRLYAA 511
              + C + +              E   + +G++   + K E   +Y  R+   + L+A 
Sbjct: 133 RLVKKCPFVIGFTCE------IDTEKGRQNMGWKRNNENKWEDNTSYDERMGGILSLFAI 186

Query: 512 LIQTEIP-----GVQNAHGLKEGWAWLARFLNALPANIYTAVA---LNAFLQLAGFALFK 563
           + + ++P        +   +   W  LAR  N  P N+ T      L ++   A     +
Sbjct: 187 ITRLQLPQEFITTTSHPFPIALSWHILARICN-TPLNLITNTHFVILGSWWDAAAVQFLQ 245

Query: 564 KYKSQFRKILDNIYDNFLNALKAREDS 590
            Y +Q  K+L  I +   + +  ++  
Sbjct: 246 AYGNQASKLLILIGEELTSRMAEKKYV 272

PyMOL of 3pev

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861	Back alignment and structure

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861	Back alignment and structure

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861	Back alignment and structure

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861	Back alignment and structure

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		649
3pev_B		297	Nucleoporin GLE1; RECA, heat, DEAD-BOX, ATPase, he	100.0
2i1j_A		575	Moesin; FERM, coiled-coil, C-ermad, ERM, radixin,	87.0
3rk6_A		234	Polyadenylate-binding protein-interacting protein;	86.44
1hu3_A		260	EIF4GII; heat repeat, translation; 2.37A {Homo sap	85.12
2zuo_A		861	MVP, major vault protein; repeat domains, protein-	85.11
2vso_E		284	Eukaryotic initiation factor 4F subunit P150; acet	81.65

>3pev_B Nucleoporin GLE1; RECA, heat, DEAD-BOX, ATPase, helicase, mRNA export, nuclear hydrolase; HET: IHP; 2.50A {Saccharomyces cerevisiae} PDB: 3peu_B* 3pex_B* 3pez_B* 3rrm_B* 3rrn_B*	Back alignment and structure

Probab=100.00  E-value=3.3e-64  Score=520.63  Aligned_cols=265  Identities=16%  Similarity=0.264  Sum_probs=232.8

Q ss_pred             hhccHHHHHHHHHHHHHHHHHHH-HHhhccccccccccccccccccccccccCchhhHHHHHHHHHHHhcCC---CChHH
Q 006353          332 VRATESALNIEQKRLQKLKELDE-ENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNP---LCPQS  407 (649)
Q Consensus       332 ~~a~~sal~~~~~rhk~LKelr~-~~~~lks~lkk~~~~~KRqI~~kIGQLSns~~QI~~Is~eL~~lL~~~---qlP~~  407 (649)
                      +.+.+..+..|+++++.||..-. .++..++++|+.++++||+||++|||||+|.+||++|+++|.++|+++   ++|+.
T Consensus         5 ~~~~~~~~~~y~~~i~~ik~~v~~~~~~~n~~lK~~~~~~kR~I~~~igQLt~s~~qi~~i~~~L~~ll~~~~~~~~~~~   84 (297)
T 3pev_B            5 FDKISKMFWHYKDKIAQIKQDIVLPIKKADVNVRNLLSRHKRKINPKFGQLTNSNQQLFKIQNELTQLINDTKGDSLAYH   84 (297)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTHHHHHHSCHHHHHHHHHHHHHHTTHHHHCCSBHHHHHHHHHHHHHHHHTTTTSHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhccchhccccCCHHHHHHHHHHHHHHHhCccCCchHHH
Confidence            66677788999999998887543 333346789999999999999999999999999999999999999864   56788


Q ss_pred             HHHHHHHHHHHhhhcCC---CCCcchhHHHHHHHHHhhCccHHHHHHHHhcccceeeccccccccccccccHHHHHHHcC
Q 006353          408 ISLATFSKKVVSRCETP---DDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIG  484 (649)
Q Consensus       408 ~~Ln~lAKaIVsQaEt~---~~~sAfPLA~V~v~L~~~~Pef~DILLArf~kkCP~lVP~~~~~~k~~~qTeEey~K~mG  484 (649)
                      |+||+|||+||+|||++   ++++|||+|.|++.||..||+|+|+||||||++|||+||||++     .+| ++|+++||
T Consensus        85 ~~ln~lAK~iV~Q~e~ev~~~p~sA~PlA~v~~~l~~~~p~~~dillA~l~k~CP~~vp~~~~-----~~t-eegr~~mG  158 (297)
T 3pev_B           85 WILNFIAKAVVHQAETEVRVKPESALPLGKLTLYLLVQFPELQELFMARLVKKCPFVIGFTCE-----IDT-EKGRQNMG  158 (297)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHSTTHHHHHHHHHHHHCGGGGTCCCC-----CSS-HHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHhccCCcccchHHHHHHHHHHhCccHHHHHHHHHhhcCCcccccCCC-----ccc-HHHHHHcC
Confidence            99999999999999995   6789999999999999999999999999999999999999974     234 67888999


Q ss_pred             ccc-CCCcccchhhHHHHHHHHHHHHHHHHhcCCC-----CCCCCCCcchHHHHHHHHhCCCCC--ccchHHHHHHHHHH
Q 006353          485 YRE-EDGKIESLENYLSRLKSYMRLYAALIQTEIP-----GVQNAHGLKEGWAWLARFLNALPA--NIYTAVALNAFLQL  556 (649)
Q Consensus       485 YR~-~dG~~Ese~~YlkRMtGI~rLYAAIiqt~~~-----~~~nP~gi~~~WkWLARILN~~P~--~~ita~VL~afLev  556 (649)
                      |+. +||+||++++|++||+||++|||||+|+++|     +.+||||++++|+|||||||++|.  ..+|++||++||++
T Consensus       159 ~~~~~dg~~E~~~~y~~Rm~Gi~~lyAAI~~~~~~~~~~~~~~~p~~~~~~W~wLArilN~~p~~~t~t~~~vL~~~Le~  238 (297)
T 3pev_B          159 WKRNNENKWEDNTSYDERMGGILSLFAIITRLQLPQEFITTTSHPFPIALSWHILARICNTPLNLITNTHFVILGSWWDA  238 (297)
T ss_dssp             CCBCTTSCBCCHHHHHHHHHHHHHHHHHHHHSCCCTTTTTTSCCSSCTHHHHHHHHHHHTSCGGGCCHHHHHHHHHHHHH
T ss_pred             CeeCCCCCcccHHHHHHHHHHHHHHHHHHHhCcCcccccccCCCCCCchHHHHHHHHHhCCCHHhhcccHHHHHHHHHHH
Confidence            976 6899999999999999999999999999854     467999999999999999999654  23345599999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCCchhHHHHHHHHHHHHhc
Q 006353          557 AGFALFKKYKSQFRKILDNIYDNFLNALKAREDSKLNLVIAEIQYYIEDK  606 (649)
Q Consensus       557 AG~~Ll~~YG~QF~KLL~lI~~df~p~L~~~~~p~~~~~v~rLe~~L~dk  606 (649)
                      ||++|+++||+||.|||++|.++|+|++.++..++    ++||+.+++++
T Consensus       239 ag~~l~~~Yg~Qf~KlL~~i~~~~~~~l~~~~~~~----a~RL~~l~e~~  284 (297)
T 3pev_B          239 AAVQFLQAYGNQASKLLILIGEELTSRMAEKKYVG----AARLRILLEAW  284 (297)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHTHHHHHTGGGCCHH----HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCcc----HHHHHHHHHHH
Confidence            99999999999999999999999999999876544    56777766654

PyMOL of 3pev

>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A	Back alignment and structure

>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens}	Back alignment and structure

>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14	Back alignment and structure

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A	Back alignment and structure

>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		649
d2es4d1		280	a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)	3e-04

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		649
d1hu3a_		243	Eukaryotic initiation factor eIF4G {Human (Homo sa	86.52

>d1hu3a_ a.118.1.14 (A:) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Eukaryotic initiation factor eIF4G
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.52  E-value=0.65  Score=42.74  Aligned_cols=177  Identities=8%  Similarity=0.049  Sum_probs=93.8

Q ss_pred             ccccccccccccccccCchhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhhhcCCCCCcchhHHHHHHHHHhhCcc-
Q 006353          367 FSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVPQ-  445 (649)
Q Consensus       367 ~~~~KRqI~~kIGQLSns~~QI~~Is~eL~~lL~~~qlP~~~~Ln~lAKaIVsQaEt~~~~sAfPLA~V~v~L~~~~Pe-  445 (649)
                      ...++|+|+-.+|.||.  +.+..|..+|.++...  .+  -.+..++..|+..|-.+ |..+..+|.++..|...+|. 
T Consensus         8 ~~~l~r~v~~lLNKLt~--~n~~~i~~ei~~l~~~--~~--~~l~~~v~~I~~kai~e-~~f~~~YA~Lc~~l~~~~~~~   80 (243)
T d1hu3a_           8 TQELFRKVRSILNKLTP--QMFNQLMKQVSGLTVD--TE--ERLKGVIDLVFEKAIDE-PSFSVAYANMCRCLVTLKVPM   80 (243)
T ss_dssp             HHHHHHHHHHHHTCSSC--CCHHHHHHHHTTCCCC--SH--HHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHTTCCCC-
T ss_pred             HHHHHHHHHHHHhhCCH--HHHHHHHHHHHHHHcc--CH--HHHHHHHHHHHHHHHcC-ccccHHHHHHHHHHHHhcCcc
Confidence            34678889999999974  4566777777655322  22  23555666666666553 35778888888888776663 


Q ss_pred             ---------HHHHHHHHhcccceeeccccccccccccccHHHHHHHcCccc----CCCcccchhhHHHHHHHHHHHHHHH
Q 006353          446 ---------VMDILLGEFHRACIYTVPKHIVFSEAAFESEEAYYKTIGYRE----EDGKIESLENYLSRLKSYMRLYAAL  512 (649)
Q Consensus       446 ---------f~DILLArf~kkCP~lVP~~~~~~k~~~qTeEey~K~mGYR~----~dG~~Ese~~YlkRMtGI~rLYAAI  512 (649)
                               |+..|+.+++..-    -...................++...    .+...+.....-.|+.|.+++.+-+
T Consensus        81 ~~~~~~~~~F~~~Ll~~~q~~F----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~k~~~~g~i~figeL  156 (243)
T d1hu3a_          81 ADKPGNTVNFRKLLLNRCQKEF----EKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGEL  156 (243)
T ss_dssp             --------CHHHHHHHHHHHHH----HHHTC------------------------------CCSSHHHHHHHHHHHHHHH
T ss_pred             ccccccchHHHHHHHHHHHHHH----HHhhhhhhhhHhhhcccccccchHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence                     5556665554321    1100000000000000000000000    0011122345678999999999998


Q ss_pred             HhcCCCCCCCCCCcchHHHH-HHHHhCCCCCccchHHHHHHHHHHHHHHHHH
Q 006353          513 IQTEIPGVQNAHGLKEGWAW-LARFLNALPANIYTAVALNAFLQLAGFALFK  563 (649)
Q Consensus       513 iqt~~~~~~nP~gi~~~WkW-LARILN~~P~~~ita~VL~afLevAG~~Ll~  563 (649)
                      .....      .+ ...... +..++.. | +....-.|..+|+++|..|-.
T Consensus       157 y~~~~------v~-~~~i~~~l~~Ll~~-~-~e~~ie~l~~lL~~~G~~L~~  199 (243)
T d1hu3a_         157 FKLKM------LT-EAIMHDCVVKLLKN-H-DEESLECLCRLLTTIGKDLDF  199 (243)
T ss_dssp             HTTTC------SC-HHHHHHHHHHHHHS-C-SHHHHHHHHHHHHHHHHHHCC
T ss_pred             Hcccc------ch-HHHHHHHHHHhcCC-C-CHHHHHHHHHHHHHHHHHHhc
Confidence            86442      11 123333 3333332 3 345677888899999998843

PyMOL of d1hu3a_