Citrus Sinensis ID: 006356

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------65
MKTQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCALAGKFLGRPVSSMGPPPMPNSSLELGVGTINGFGGLSSTVTTTLPADFGTGISNALPVVMPPNRSGPGVTGLDRSIERSMFLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECLAILMSTSVSARDHTAITAGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAINANQSSMLILQETCTDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCES
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccEEEcccccccEEEcHHHHHHccccccccccccccEEEEEEEEEEEEcHHHHHHHHccHHHHHHccccccccccccEEEEccccccccccEEEEHHHHHccccccccEEEEEEEEEEEcccccEEEEEEEcccccccccccccccEEEcccccEEEEcccccEEEEEEEcccccccccccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEEccccccccccEEEEEEEEEccccccHHHHHHHHHcccccccHHHcccccccEEEEEcccccccccEEEEEEEccccccccHHHHHHHHHccccccEEEEccccHHHHHHHHcccccccccccccccEEcccccccccccccccccccccccccccccccEEEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHcccc
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcHHHHHHHHHHHHHHHHHHHHccccEEEcccccccEEEEcHHHHHHHccccccccccccEEEEEcccEEEEEcHHHHHHHHHccHHHHHHccHHHHHccEEEEEccccccccccHEEEEEEEEccccccccHHHEEEEEEEHEcccccEEEEEEEccccccccccccccHcccccccEEEEEcccccEEEEEEEEEEEccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEEEEccccccccccEEEEEEcEEEccccHHHHHHHHHccccccHHHHHccccccEEEEEcccccccccEEEEEEEcccccccccEEEEEEEcccccccEEEEccccHHHHHHHEccccccccccccccEEEEcccccccccccccccccccccccccccccEEEEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHcccc
MKTQLERHENSLLRQENDKLRAENMSIRdamrnpictncggpaiigdisLEEQHLRIENARLKDELDRVCALAGkflgrpvssmgpppmpnsslelgvgtingfgglsstvtttlpadfgtgisnalpvvmppnrsgpgvtgldrsIERSMFLELALAAMDELVKMaqtdeplwirsfegsgrqvlnheeylrtftpciglkpngfvteaSRETGMVIINSLALVEtlmdpnrwaemfpcmiartattdvissgmggtrnGALQLMHAELQVlsplvpvrevNFLRFCKQHAEGVWAVVDVSIDTiretsgapafvncrrlpsgcvvqdmpngyskVTWVEhaeydesqvhqlykpliisgmgFGAQRWVATLQRQCECLAILMStsvsardhtaitaGGRRSMLKLAQRMTDNFCAGVCASTVHkwnklnagnvdedvRVMTRksvddpgeppgiVLSAAtsvwlpvspqrLFNFLRDErlrsewdilsnggpmqeMAHIAKGQDHGNCVSLLRASAINANQSSMLILQETCTDAAgslvvyapvdipamhvvmngGDSAYVALLpsgfaivpdgpdsrgplangptsgngsnggsqrvgGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCES
mktqlerhensllrqendkLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCALAGKFLGRPVSSMGPPPMPNSSLELGVGTINGFGGLSSTVTTTLPADFGTGISNALPVVMPPNRSGPGVTGLDRSIERSMFLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTftpciglkpnGFVTEASRETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETsgapafvncrrlpsgcvvqdmPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECLAILmstsvsardhTAITAGGRRSMLKLAQRMTDNFCAGVCASTvhkwnklnagnvdedvrVMTRKsvddpgepPGIVLSAatsvwlpvsPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAINANQSSMLILQETCTDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCES
MKTQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCALAGKFLGRpvssmgpppmpnssLELGVGTINGFGGLSSTVTTTLPADFGTGISNALPVVMPPNRSGPGVTGLDRSIERSMFLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECLAILMSTSVSARDHTAITAGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAINANQSSMLILQETCTDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPDSRGPLAngptsgngsnggsqrvggsLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCES
******************************MRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCALAGKFLG*****************LGVGTINGFGGLSSTVTTTLPADFGTGISNALPVVM**********GLDRSIERSMFLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECLAILMSTSVSARDHTAITAGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRV*************GIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAINANQSSMLILQETCTDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIV***************************GGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAAL****
*******HENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCAL*****************************************************************************SMFLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTF***************SRETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIR***GAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECLAILMSTSV*****TAITAGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRK******EPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAINANQSSMLILQETCTDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPD****************************LLTVAFQILVNS*****L*VESVETVNNLISCTVQKIKAALQC**
**********SLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCALAGKFLGRPVSSMGPPPMPNSSLELGVGTINGFGGLSSTVTTTLPADFGTGISNALPVVMPPNRSGPGVTGLDRSIERSMFLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECLAILMSTSVSARDHTAITAGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAINANQSSMLILQETCTDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCES
*****ERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCALAGKFLGRPVSSMGPPPMPNSSLELGVGTINGFGGLSSTVTTTLPADFGTGISNALPVVMPPNRSGPGVTGLDRSIERSMFLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIR**SGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECLAILMSTSVSARDHTAITAGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAINANQSSMLILQETCTDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDG***********************VGGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCES
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MKTQxxxxxxxxxxxxxxxxxxxxxxxxxxMRNPICTNCGGPAIIGDISLEEQHLRIENARLKDELDRVCALAGKFLGRPVSSMGPPPMPNSSLELGVGTINGFGGLSSTVTTTLPADFGTGISNALPVVMPPNRSGPGVTGLDRSIERSMFLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECLAILMSTSVSARDHTAITAGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAINANQSSMLILQETCTDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPDSRGPLANGPTSGNGSNGGSQRVGGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCES
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query648 2.2.26 [Sep-21-2011]
Q0WV12802 Homeobox-leucine zipper p yes no 0.947 0.765 0.720 0.0
Q9M2E8808 Homeobox-leucine zipper p no no 0.979 0.785 0.705 0.0
Q6EPF0804 Homeobox-leucine zipper p yes no 0.975 0.786 0.669 0.0
Q7Y0V9813 Homeobox-leucine zipper p no no 0.969 0.772 0.615 0.0
Q7Y0V7872 Homeobox-leucine zipper p no no 0.984 0.731 0.602 0.0
Q93V99743 Homeobox-leucine zipper p no no 0.955 0.833 0.541 0.0
Q8RWU4762 Homeobox-leucine zipper p no no 0.959 0.816 0.544 0.0
A2YR02749 Homeobox-leucine zipper p N/A no 0.905 0.783 0.553 0.0
A3BPF2749 Homeobox-leucine zipper p no no 0.905 0.783 0.552 0.0
Q94C37721 Homeobox-leucine zipper p no no 0.927 0.833 0.531 0.0
>sp|Q0WV12|ANL2_ARATH Homeobox-leucine zipper protein ANTHOCYANINLESS 2 OS=Arabidopsis thaliana GN=ANL2 PE=2 SV=1 Back     alignment and function desciption
 Score =  914 bits (2362), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/648 (72%), Positives = 529/648 (81%), Gaps = 34/648 (5%)

Query: 1   MKTQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENA 60
           MKTQLERHEN+LLRQENDKLRAENMSIR+AMRNPICTNCGGPA++GD+SLEE HLRIENA
Sbjct: 189 MKTQLERHENALLRQENDKLRAENMSIREAMRNPICTNCGGPAMLGDVSLEEHHLRIENA 248

Query: 61  RLKDELDRVCALAGKFLGRPVSSMGPPPMPNSSLELGVGTINGFGGLSSTVTTTLPADFG 120
           RLKDELDRVC L GKFLG   +        NSSLEL VGT N  G  +       P DFG
Sbjct: 249 RLKDELDRVCNLTGKFLGHHHNHHY-----NSSLELAVGTNNNGGHFA------FPPDFG 297

Query: 121 TGISNALPVVMPPNRSGPGVTGLDRSIERSMFLELALAAMDELVKMAQTDEPLWIRSFEG 180
                 LP   P  +    + G+D   ++S+ LELAL AMDELVK+AQ++EPLW++S +G
Sbjct: 298 G-GGGCLP---PQQQQSTVINGID---QKSVLLELALTAMDELVKLAQSEEPLWVKSLDG 350

Query: 181 SGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMDPNRWAEMFPC 240
             R  LN +EY+RTF+     KP G  TEASR +GMVIINSLALVETLMD NRW EMFPC
Sbjct: 351 E-RDELNQDEYMRTFS---STKPTGLATEASRTSGMVIINSLALVETLMDSNRWTEMFPC 406

Query: 241 MIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVD 300
            +AR  TTDVIS GM GT NGALQLM+AELQVLSPLVPVR VNFLRFCKQHAEGVWAVVD
Sbjct: 407 NVARATTTDVISGGMAGTINGALQLMNAELQVLSPLVPVRNVNFLRFCKQHAEGVWAVVD 466

Query: 301 VSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIIS 360
           VSID +RE SG    +  RRLPSGCVVQD+ NGYSKVTWVEHAEYDE+Q+HQLY+PL+ S
Sbjct: 467 VSIDPVRENSGGAPVI--RRLPSGCVVQDVSNGYSKVTWVEHAEYDENQIHQLYRPLLRS 524

Query: 361 GMGFGAQRWVATLQRQCECLAILMSTSVSARDHTAITAGGRRSMLKLAQRMTDNFCAGVC 420
           G+GFG+QRW+ATLQRQCECLAIL+S+SV++ D+T+IT GGR+SMLKLAQRMT NFC+G+ 
Sbjct: 525 GLGFGSQRWLATLQRQCECLAILISSSVTSHDNTSITPGGRKSMLKLAQRMTFNFCSGIS 584

Query: 421 ASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDE 480
           A +VH W+KL  GNVD DVRVMTRKSVDDPGEPPGIVLSAATSVWLP +PQRL++FLR+E
Sbjct: 585 APSVHNWSKLTVGNVDPDVRVMTRKSVDDPGEPPGIVLSAATSVWLPAAPQRLYDFLRNE 644

Query: 481 RLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAINANQSSMLILQETCTDAAGSL 540
           R+R EWDILSNGGPMQEMAHI KGQD G  VSLLR++A+NANQSSMLILQETC DA+G+L
Sbjct: 645 RMRCEWDILSNGGPMQEMAHITKGQDQG--VSLLRSNAMNANQSSMLILQETCIDASGAL 702

Query: 541 VVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPDSRGPLANGPTSGNGSNGGSQRV 600
           VVYAPVDIPAMHVVMNGGDS+YVALLPSGFA++PDG    G   +G     G        
Sbjct: 703 VVYAPVDIPAMHVVMNGGDSSYVALLPSGFAVLPDGGIDGGGSGDGDQRPVG-------- 754

Query: 601 GGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCES 648
           GGSLLTVAFQILVN+LPTAKLTVESVETVNNLISCTVQKI+AALQCES
Sbjct: 755 GGSLLTVAFQILVNNLPTAKLTVESVETVNNLISCTVQKIRAALQCES 802
Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9M2E8|HDG1_ARATH Homeobox-leucine zipper protein HDG1 OS=Arabidopsis thaliana GN=HDG1 PE=2 SV=1 Back     alignment and function description
>sp|Q6EPF0|ROC5_ORYSJ Homeobox-leucine zipper protein ROC5 OS=Oryza sativa subsp. japonica GN=ROC5 PE=2 SV=1 Back     alignment and function description
>sp|Q7Y0V9|ROC4_ORYSJ Homeobox-leucine zipper protein ROC4 OS=Oryza sativa subsp. japonica GN=ROC4 PE=2 SV=2 Back     alignment and function description
>sp|Q7Y0V7|ROC6_ORYSJ Homeobox-leucine zipper protein ROC6 OS=Oryza sativa subsp. japonica GN=ROC6 PE=2 SV=2 Back     alignment and function description
>sp|Q93V99|PDF2_ARATH Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 OS=Arabidopsis thaliana GN=PDF2 PE=2 SV=1 Back     alignment and function description
>sp|Q8RWU4|ATML1_ARATH Homeobox-leucine zipper protein MERISTEM L1 OS=Arabidopsis thaliana GN=ATML1 PE=2 SV=1 Back     alignment and function description
>sp|A2YR02|ROC7_ORYSI Homeobox-leucine zipper protein ROC7 OS=Oryza sativa subsp. indica GN=ROC7 PE=3 SV=1 Back     alignment and function description
>sp|A3BPF2|ROC7_ORYSJ Homeobox-leucine zipper protein ROC7 OS=Oryza sativa subsp. japonica GN=ROC7 PE=2 SV=1 Back     alignment and function description
>sp|Q94C37|HDG2_ARATH Homeobox-leucine zipper protein HDG2 OS=Arabidopsis thaliana GN=HDG2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query648
224130112 823 predicted protein [Populus trichocarpa] 0.995 0.783 0.882 0.0
147811086 784 hypothetical protein VITISV_023503 [Viti 0.984 0.813 0.891 0.0
359489358 811 PREDICTED: homeobox-leucine zipper prote 0.984 0.786 0.891 0.0
255541474 825 homeobox protein, putative [Ricinus comm 0.987 0.775 0.885 0.0
350539483 821 cutin deficient 2 [Solanum lycopersicum] 0.983 0.775 0.857 0.0
224063979 790 predicted protein [Populus trichocarpa] 0.992 0.813 0.859 0.0
449454480 841 PREDICTED: homeobox-leucine zipper prote 0.995 0.766 0.853 0.0
356520461 829 PREDICTED: homeobox-leucine zipper prote 0.987 0.772 0.850 0.0
356505007 835 PREDICTED: homeobox-leucine zipper prote 0.984 0.764 0.837 0.0
302398853 824 HD domain class transcription factor [Ma 0.983 0.773 0.831 0.0
>gi|224130112|ref|XP_002320755.1| predicted protein [Populus trichocarpa] gi|222861528|gb|EEE99070.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1170 bits (3026), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 580/657 (88%), Positives = 611/657 (92%), Gaps = 12/657 (1%)

Query: 1   MKTQLERHENSLLRQENDKLRAENMSIRDAMRNPICTNCGGPAIIGDISLEEQHLRIENA 60
           MKTQLERHENSLLRQENDKLRAENMSIRDAMRNP+C+NCGGPAIIGDISLEEQHLRIENA
Sbjct: 170 MKTQLERHENSLLRQENDKLRAENMSIRDAMRNPMCSNCGGPAIIGDISLEEQHLRIENA 229

Query: 61  RLKDELDRVCALAGKFLGRPVSSMGP---PPMPNSSLELGVGTINGFGGLSSTVTTTLP- 116
           RLKDELDRVCALAGKFLGRP+SS+     PPMPNSSLELGVG+ NGF GLS TV TTLP 
Sbjct: 230 RLKDELDRVCALAGKFLGRPISSLASSLGPPMPNSSLELGVGS-NGFAGLS-TVATTLPL 287

Query: 117 -ADFGTGISNALPVVMPPNRSGPGVTGLDRSIERSMFLELALAAMDELVKMAQTDEPLWI 175
             DF  GIS ALPV+     +  GVTG+ RS+ERSMFLELALAAMDELVKMAQTDEPLWI
Sbjct: 288 GPDFVGGISGALPVLTQTRPATTGVTGIGRSLERSMFLELALAAMDELVKMAQTDEPLWI 347

Query: 176 RSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMDPNRWA 235
           RSF+G GR++LNHEEYLRT TPCIG+KP+GFV+EASRETGMVIINSLALVETLMD NRWA
Sbjct: 348 RSFDG-GREILNHEEYLRTITPCIGMKPSGFVSEASRETGMVIINSLALVETLMDSNRWA 406

Query: 236 EMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGV 295
           EMFPC+IART+TTDVI++GMGGTRNG+LQLMHAELQVLSPLVPVREVNFLRFCKQHAEGV
Sbjct: 407 EMFPCVIARTSTTDVIANGMGGTRNGSLQLMHAELQVLSPLVPVREVNFLRFCKQHAEGV 466

Query: 296 WAVVDVSIDTIRETSGA-PAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLY 354
           WAVVDVS+DTIRETSGA P FVNCRRLPSGCVVQDMPNGYSKVTW+EHAEYDESQ HQLY
Sbjct: 467 WAVVDVSVDTIRETSGASPTFVNCRRLPSGCVVQDMPNGYSKVTWIEHAEYDESQTHQLY 526

Query: 355 KPLIISGMGFGAQRWVATLQRQCECLAILMSTSVSARDHTAITAGGRRSMLKLAQRMTDN 414
           +PLI SGMGFGAQRW+ATLQRQ ECLAILMS++V +RDHTAITA GRRSMLKLAQRMT N
Sbjct: 527 RPLISSGMGFGAQRWIATLQRQSECLAILMSSNVPSRDHTAITASGRRSMLKLAQRMTAN 586

Query: 415 FCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLF 474
           FCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLF
Sbjct: 587 FCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLF 646

Query: 475 NFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAINANQSSMLILQETCT 534
           +FLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASA+NANQSSMLILQETC 
Sbjct: 647 DFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAMNANQSSMLILQETCI 706

Query: 535 DAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPDSRGP--LANGPTSGNG 592
           DAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGP SRGP     GPT+ N 
Sbjct: 707 DAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPGSRGPPTTNGGPTANNN 766

Query: 593 SNGGS-QRVGGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCES 648
           SNGG  +RV GSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCES
Sbjct: 767 SNGGGPERVSGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCES 823

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147811086|emb|CAN61351.1| hypothetical protein VITISV_023503 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359489358|ref|XP_002272264.2| PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255541474|ref|XP_002511801.1| homeobox protein, putative [Ricinus communis] gi|223548981|gb|EEF50470.1| homeobox protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|350539483|ref|NP_001234657.1| cutin deficient 2 [Solanum lycopersicum] gi|255529749|gb|ACU12849.1| cutin deficient 2 [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|224063979|ref|XP_002301331.1| predicted protein [Populus trichocarpa] gi|222843057|gb|EEE80604.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449454480|ref|XP_004144982.1| PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like [Cucumis sativus] gi|449473159|ref|XP_004153804.1| PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like [Cucumis sativus] gi|449522284|ref|XP_004168157.1| PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356520461|ref|XP_003528880.1| PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like [Glycine max] Back     alignment and taxonomy information
>gi|356505007|ref|XP_003521284.1| PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like [Glycine max] Back     alignment and taxonomy information
>gi|302398853|gb|ADL36721.1| HD domain class transcription factor [Malus x domestica] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query648
TAIR|locus:2127008802 ANL2 "ANTHOCYANINLESS 2" [Arab 0.787 0.635 0.716 6.9e-239
TAIR|locus:2098866808 HDG1 "AT3G61150" [Arabidopsis 0.983 0.788 0.689 2.8e-231
TAIR|locus:2135368743 PDF2 "AT4G04890" [Arabidopsis 0.757 0.660 0.578 1.1e-176
TAIR|locus:2119048762 ATML1 "AT4G21750" [Arabidopsis 0.961 0.817 0.532 1.4e-174
TAIR|locus:2207235721 HDG2 "AT1G05230" [Arabidopsis 0.754 0.678 0.564 1.8e-170
TAIR|locus:2145116682 HDG7 "AT5G52170" [Arabidopsis 0.651 0.618 0.583 6e-159
TAIR|locus:2206880722 HDG11 "AT1G73360" [Arabidopsis 0.955 0.857 0.455 2e-136
TAIR|locus:2030913687 HDG12 "homeodomain GLABROUS 12 0.854 0.806 0.437 6.8e-132
TAIR|locus:2062540725 HDG3 "AT2G32370" [Arabidopsis 0.665 0.594 0.465 5.2e-119
TAIR|locus:2131814686 FWA "AT4G25530" [Arabidopsis t 0.668 0.631 0.446 2.8e-105
TAIR|locus:2127008 ANL2 "ANTHOCYANINLESS 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1923 (682.0 bits), Expect = 6.9e-239, Sum P(2) = 6.9e-239
 Identities = 382/533 (71%), Positives = 436/533 (81%)

Query:   116 PADFGTGISNALPVVMPPNRSGPGVTGLDRSIERSMFLELALAAMDELVKMAQTDEPLWI 175
             P DFG G    LP   P  +    + G+D   ++S+ LELAL AMDELVK+AQ++EPLW+
Sbjct:   293 PPDFGGG-GGCLP---PQQQQSTVINGID---QKSVLLELALTAMDELVKLAQSEEPLWV 345

Query:   176 RSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMDPNRWA 235
             +S +G  R  LN +EY+RTF+     KP G  TEASR +GMVIINSLALVETLMD NRW 
Sbjct:   346 KSLDGE-RDELNQDEYMRTFS---STKPTGLATEASRTSGMVIINSLALVETLMDSNRWT 401

Query:   236 EMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGV 295
             EMFPC +AR  TTDVIS GM GT NGALQLM+AELQVLSPLVPVR VNFLRFCKQHAEGV
Sbjct:   402 EMFPCNVARATTTDVISGGMAGTINGALQLMNAELQVLSPLVPVRNVNFLRFCKQHAEGV 461

Query:   296 WAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYK 355
             WAVVDVSID +RE SG    +  RRLPSGCVVQD+ NGYSKVTWVEHAEYDE+Q+HQLY+
Sbjct:   462 WAVVDVSIDPVRENSGGAPVI--RRLPSGCVVQDVSNGYSKVTWVEHAEYDENQIHQLYR 519

Query:   356 PLIISGMGFGAQRWVATLQRQCECLAILMSTSVSARDHTAITAGGRRSMLKLAQRMTDNF 415
             PL+ SG+GFG+QRW+ATLQRQCECLAIL+S+SV++ D+T+IT GGR+SMLKLAQRMT NF
Sbjct:   520 PLLRSGLGFGSQRWLATLQRQCECLAILISSSVTSHDNTSITPGGRKSMLKLAQRMTFNF 579

Query:   416 CAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFN 475
             C+G+ A +VH W+KL  GNVD DVRVMTRKSVDDPGEPPGIVLSAATSVWLP +PQRL++
Sbjct:   580 CSGISAPSVHNWSKLTVGNVDPDVRVMTRKSVDDPGEPPGIVLSAATSVWLPAAPQRLYD 639

Query:   476 FLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAINANQSSMLILQETCTD 535
             FLR+ER+R EWDILSNGGPMQEMAHI KGQD G  VSLLR++A+NANQSSMLILQETC D
Sbjct:   640 FLRNERMRCEWDILSNGGPMQEMAHITKGQDQG--VSLLRSNAMNANQSSMLILQETCID 697

Query:   536 AAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPDSRGPLAXXXXXXXXXXX 595
             A+G+LVVYAPVDIPAMHVVMNGGDS+YVALLPSGFA++PDG    G              
Sbjct:   698 ASGALVVYAPVDIPAMHVVMNGGDSSYVALLPSGFAVLPDGGIDGG--------GSGDGD 749

Query:   596 XXXXXXXXLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCES 648
                     LLTVAFQILVN+LPTAKLTVESVETVNNLISCTVQKI+AALQCES
Sbjct:   750 QRPVGGGSLLTVAFQILVNNLPTAKLTVESVETVNNLISCTVQKIRAALQCES 802
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM;IEA
GO:0043565 "sequence-specific DNA binding" evidence=IEA
GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=IMP
GO:0048364 "root development" evidence=IMP
GO:0048765 "root hair cell differentiation" evidence=IMP
GO:0006473 "protein acetylation" evidence=RCA
GO:0042335 "cuticle development" evidence=IMP
TAIR|locus:2098866 HDG1 "AT3G61150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2135368 PDF2 "AT4G04890" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2119048 ATML1 "AT4G21750" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2207235 HDG2 "AT1G05230" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2145116 HDG7 "AT5G52170" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2206880 HDG11 "AT1G73360" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2030913 HDG12 "homeodomain GLABROUS 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2062540 HDG3 "AT2G32370" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2131814 FWA "AT4G25530" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6EPF0ROC5_ORYSJNo assigned EC number0.66910.97530.7860yesno
Q0WV12ANL2_ARATHNo assigned EC number0.72060.94750.7655yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_XIV000202
hypothetical protein (823 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query648
cd08875229 cd08875, START_ArGLABRA2_like, C-terminal lipid-bi 1e-128
pfam01852205 pfam01852, START, START domain 8e-59
smart00234205 smart00234, START, in StAR and phosphatidylcholine 5e-39
cd00177193 cd00177, START, Lipid-binding START domain of mamm 0.002
>gnl|CDD|176884 cd08875, START_ArGLABRA2_like, C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins Back     alignment and domain information 
 Score =  376 bits (968), Expect = e-128
 Identities = 140/230 (60%), Positives = 172/230 (74%), Gaps = 1/230 (0%)

Query: 149 RSMFLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVT 208
           +S  LELA  AMDEL+K+AQ  EPLWI+S      ++LN +EY R F    G KP GF T
Sbjct: 1   KSGLLELAEEAMDELLKLAQGGEPLWIKSPGM-KPEILNPDEYERMFPRHGGSKPGGFTT 59

Query: 209 EASRETGMVIINSLALVETLMDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHA 268
           EASR  G+V++N++ LVE LMD N+W+E+FP ++++  T  VIS+G GG RNG LQLM+A
Sbjct: 60  EASRACGLVMMNAIKLVEILMDVNKWSELFPGIVSKAKTLQVISTGNGGNRNGTLQLMYA 119

Query: 269 ELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQ 328
           ELQV SPLVP RE  FLR+CKQ  +G+WAVVDVSID ++      +FV CRRLPSGC++Q
Sbjct: 120 ELQVPSPLVPTREFYFLRYCKQLEDGLWAVVDVSIDGVQTAPPPASFVRCRRLPSGCLIQ 179

Query: 329 DMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE 378
           DMPNGYSKVTWVEH E DE  VH LY+ L+ SG+ FGA RWVATLQRQCE
Sbjct: 180 DMPNGYSKVTWVEHVEVDEKPVHLLYRYLVSSGLAFGATRWVATLQRQCE 229

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells. Length = 229
>gnl|CDD|216740 pfam01852, START, START domain Back     alignment and domain information
>gnl|CDD|214575 smart00234, START, in StAR and phosphatidylcholine transfer protein Back     alignment and domain information
>gnl|CDD|176851 cd00177, START, Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 648
cd08875229 START_ArGLABRA2_like C-terminal lipid-binding STAR 100.0
PF01852206 START: START domain; InterPro: IPR002913 START (St 99.77
smart00234206 START in StAR and phosphatidylcholine transfer pro 99.74
cd00177193 START Lipid-binding START domain of mammalian STAR 99.32
cd08871222 START_STARD10-like Lipid-binding START domain of m 99.14
cd08867206 START_STARD4_5_6-like Lipid-binding START domain o 99.05
cd08868208 START_STARD1_3_like Cholesterol-binding START doma 99.04
cd08904204 START_STARD6-like Lipid-binding START domain of ma 98.84
cd08909205 START_STARD13-like C-terminal lipid-binding START 98.68
cd08903208 START_STARD5-like Lipid-binding START domain of ma 98.67
cd08869197 START_RhoGAP C-terminal lipid-binding START domain 98.64
PLN00188719 enhanced disease resistance protein (EDR2); Provis 98.57
cd08905209 START_STARD1-like Cholesterol-binding START domain 98.54
cd08902202 START_STARD4-like Lipid-binding START domain of ma 98.41
cd08906209 START_STARD3-like Cholesterol-binding START domain 98.41
cd08910207 START_STARD2-like Lipid-binding START domain of ma 98.23
cd08877215 START_2 Uncharacterized subgroup of the steroidoge 98.15
cd08908204 START_STARD12-like C-terminal lipid-binding START 98.11
cd08876195 START_1 Uncharacterized subgroup of the steroidoge 98.07
cd08874205 START_STARD9-like C-terminal START domain of mamma 97.98
cd08907205 START_STARD8-like C-terminal lipid-binding START d 97.77
cd08870209 START_STARD2_7-like Lipid-binding START domain of 97.76
cd08872235 START_STARD11-like Ceramide-binding START domain o 97.66
cd08911207 START_STARD7-like Lipid-binding START domain of ma 97.58
cd08871222 START_STARD10-like Lipid-binding START domain of m 97.27
cd08873235 START_STARD14_15-like Lipid-binding START domain o 97.23
cd08913240 START_STARD14-like Lipid-binding START domain of m 96.75
cd08869197 START_RhoGAP C-terminal lipid-binding START domain 96.73
cd08914236 START_STARD15-like Lipid-binding START domain of m 96.63
cd08907205 START_STARD8-like C-terminal lipid-binding START d 96.39
cd08904204 START_STARD6-like Lipid-binding START domain of ma 96.32
cd08874205 START_STARD9-like C-terminal START domain of mamma 95.57
cd08876195 START_1 Uncharacterized subgroup of the steroidoge 95.36
cd08868208 START_STARD1_3_like Cholesterol-binding START doma 95.32
PF0600572 DUF904: Protein of unknown function (DUF904); Inte 95.06
cd08877215 START_2 Uncharacterized subgroup of the steroidoge 94.95
cd08867206 START_STARD4_5_6-like Lipid-binding START domain o 94.51
cd08906209 START_STARD3-like Cholesterol-binding START domain 94.5
smart00234206 START in StAR and phosphatidylcholine transfer pro 94.45
cd00177193 START Lipid-binding START domain of mammalian STAR 94.22
cd08903208 START_STARD5-like Lipid-binding START domain of ma 94.18
TIGR00219283 mreC rod shape-determining protein MreC. MreC (mur 94.17
cd08911207 START_STARD7-like Lipid-binding START domain of ma 93.94
cd08870209 START_STARD2_7-like Lipid-binding START domain of 93.41
cd08873235 START_STARD14_15-like Lipid-binding START domain o 93.38
cd08914236 START_STARD15-like Lipid-binding START domain of m 93.27
cd08908204 START_STARD12-like C-terminal lipid-binding START 92.98
PF07407420 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: 92.23
PRK13922276 rod shape-determining protein MreC; Provisional 91.76
cd08860146 TcmN_ARO-CYC_like N-terminal aromatase/cyclase dom 91.15
PF01852206 START: START domain; InterPro: IPR002913 START (St 91.13
cd08909205 START_STARD13-like C-terminal lipid-binding START 90.63
cd05018144 CoxG Carbon monoxide dehydrogenase subunit G (CoxG 90.32
cd08866144 SRPBCC_11 Ligand-binding SRPBCC domain of an uncha 90.2
cd08864208 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand- 89.89
PRK1542279 septal ring assembly protein ZapB; Provisional 88.71
cd07813138 COQ10p_like Coenzyme Q-binding protein COQ10p and 88.52
KOG2761219 consensus START domain-containing proteins involve 88.01
PRK14872337 rod shape-determining protein MreC; Provisional 87.33
cd08910207 START_STARD2-like Lipid-binding START domain of ma 87.15
cd08875229 START_ArGLABRA2_like C-terminal lipid-binding STAR 86.95
cd08905209 START_STARD1-like Cholesterol-binding START domain 85.6
cd07819140 SRPBCC_2 Ligand-binding SRPBCC domain of an unchar 84.54
cd08861142 OtcD1_ARO-CYC_like N-terminal and C-terminal aroma 84.24
cd08913240 START_STARD14-like Lipid-binding START domain of m 84.04
PRK10724158 hypothetical protein; Provisional 82.25
COG1792284 MreC Cell shape-determining protein [Cell envelope 81.52
cd07817139 SRPBCC_8 Ligand-binding SRPBCC domain of an unchar 81.4
cd08902202 START_STARD4-like Lipid-binding START domain of ma 81.22
PF1271186 Kinesin-relat_1: Kinesin motor; InterPro: IPR02465 80.65
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins Back     alignment and domain information 
Probab=100.00  E-value=2.6e-91  Score=701.65  Aligned_cols=229  Identities=61%  Similarity=1.029  Sum_probs=220.7

Q ss_pred             hhHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCcccccChHHHhhhcCCCCCCCCCCCeeeeeeeeeeEEechhhHHHHh
Q 006356          149 RSMFLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETL  228 (648)
Q Consensus       149 ~~~l~~lA~~Am~Ell~la~~~eplWi~~~~~gp~evLn~~eY~~~F~~~~g~~~~g~~~EASR~~glV~m~~~~LVe~l  228 (648)
                      |++|++||++||+||++|||+++|||++..+++ +|+||+|||.++|++..|.++.||++|||||||+|.||+.+|||+|
T Consensus         1 k~~~~~lA~~am~Ell~~a~~~~plWi~~~~~~-~~~l~~dey~~~f~~~~~~~~~~~~~eASR~~glV~m~~~~lVe~l   79 (229)
T cd08875           1 KSGLLELAEEAMDELLKLAQGGEPLWIKSPGMK-PEILNPDEYERMFPRHGGSKPGGFTTEASRACGLVMMNAIKLVEIL   79 (229)
T ss_pred             ChHHHHHHHHHHHHHHHHhccCCCCceecCCCC-ccccCHHHHhhcccCcCCCCCCCCeEEEEeeeEEEecCHHHHHHHH
Confidence            389999999999999999999999999988777 6999999999999999999999999999999999999999999999


Q ss_pred             CChhhhhhhcccccccceEeEEeeCCCCCCCCCceeeeeeeeecccccccceeeEEEEeeeeecCceEEEEEEecccccC
Q 006356          229 MDPNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRE  308 (648)
Q Consensus       229 mD~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~v~SPLVp~Re~~fLRyckql~~G~WaVvDvSld~~~~  308 (648)
                      ||++||.++||+||++|+|++||++|.+|+|||+|||||+|||+||||||+|||||||||||++||+|||||||+|+.+.
T Consensus        80 mD~~kW~~~Fp~iv~~a~tl~vistg~~g~~~G~lqlmyael~~pSpLVp~Re~~fLRyc~~l~dG~w~VvdvSld~~~~  159 (229)
T cd08875          80 MDVNKWSELFPGIVSKAKTLQVISTGNGGNRNGTLQLMYAELQVPSPLVPTREFYFLRYCKQLEDGLWAVVDVSIDGVQT  159 (229)
T ss_pred             hChhhhhhhhhhhcceeeEEEEeeCCCCCCCCceehhhhhhcccCcccccCCeEEEEEEEEEeCCCeEEEEEEeeccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998754


Q ss_pred             CCCCCCcccccccCCceeEeecCCCceEEEEEEeeeecccccccccccccccchhHHHHHHHHHHHHHHH
Q 006356          309 TSGAPAFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCE  378 (648)
Q Consensus       309 ~~~~~~~~r~~rlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~RWlatLqRqce  378 (648)
                      .+..++++||||+|||||||||+|||||||||||+|||++.+|.+||++++||+||||+||+++||||||
T Consensus       160 ~p~~~~~~r~~~~PSGcLIq~~~nG~SkVtwVeH~e~d~~~~~~l~~~l~~sg~AfgA~rw~a~lqRqce  229 (229)
T cd08875         160 APPPASFVRCRRLPSGCLIQDMPNGYSKVTWVEHVEVDEKPVHLLYRYLVSSGLAFGATRWVATLQRQCE  229 (229)
T ss_pred             CCCCCCccEEEEecCcEEEEECCCCceEEEEEEEEeccCCcccccchhhhhhhHHHHHHHHHHHHHHhcC
Confidence            4444458999999999999999999999999999999999999999999999999999999999999997

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins [] Back     alignment and domain information
>smart00234 START in StAR and phosphatidylcholine transfer protein Back     alignment and domain information
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins Back     alignment and domain information
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins Back     alignment and domain information
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins Back     alignment and domain information
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins Back     alignment and domain information
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins Back     alignment and domain information
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain Back     alignment and domain information
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins Back     alignment and domain information
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain Back     alignment and domain information
>PLN00188 enhanced disease resistance protein (EDR2); Provisional Back     alignment and domain information
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins Back     alignment and domain information
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins Back     alignment and domain information
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins Back     alignment and domain information
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins Back     alignment and domain information
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family Back     alignment and domain information
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain Back     alignment and domain information
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family Back     alignment and domain information
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding Back     alignment and domain information
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain Back     alignment and domain information
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins Back     alignment and domain information
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains Back     alignment and domain information
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins Back     alignment and domain information
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins Back     alignment and domain information
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins Back     alignment and domain information
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins Back     alignment and domain information
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain Back     alignment and domain information
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins Back     alignment and domain information
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain Back     alignment and domain information
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins Back     alignment and domain information
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding Back     alignment and domain information
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family Back     alignment and domain information
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins Back     alignment and domain information
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation Back     alignment and domain information
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family Back     alignment and domain information
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins Back     alignment and domain information
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins Back     alignment and domain information
>smart00234 START in StAR and phosphatidylcholine transfer protein Back     alignment and domain information
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins Back     alignment and domain information
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins Back     alignment and domain information
>TIGR00219 mreC rod shape-determining protein MreC Back     alignment and domain information
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins Back     alignment and domain information
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins Back     alignment and domain information
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins Back     alignment and domain information
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins Back     alignment and domain information
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain Back     alignment and domain information
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus Back     alignment and domain information
>PRK13922 rod shape-determining protein MreC; Provisional Back     alignment and domain information
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains Back     alignment and domain information
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins [] Back     alignment and domain information
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain Back     alignment and domain information
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG) Back     alignment and domain information
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily Back     alignment and domain information
>PRK15422 septal ring assembly protein ZapB; Provisional Back     alignment and domain information
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins Back     alignment and domain information
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism] Back     alignment and domain information
>PRK14872 rod shape-determining protein MreC; Provisional Back     alignment and domain information
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins Back     alignment and domain information
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins Back     alignment and domain information
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins Back     alignment and domain information
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains Back     alignment and domain information
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins Back     alignment and domain information
>PRK10724 hypothetical protein; Provisional Back     alignment and domain information
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins Back     alignment and domain information
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query648
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 59.1 bits (142), Expect = 4e-09
 Identities = 66/503 (13%), Positives = 135/503 (26%), Gaps = 170/503 (33%)

Query: 118 DFGTGI-----SNALPVVMPPNRSGPGVTGLD-RSIERSMFLELALAAMDELVKMAQTDE 171
           DF TG       + L V          V   D + ++      L+   +D ++       
Sbjct: 8   DFETGEHQYQYKDILSVFEDAF-----VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVS 62

Query: 172 P----LWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPN-GFVTEA----SRETGMVIINSL 222
                 W         +++  ++++        L+ N  F+        R+  M+    +
Sbjct: 63  GTLRLFWT--LLSKQEEMV--QKFVEE-----VLRINYKFLMSPIKTEQRQPSMMTRMYI 113

Query: 223 ALVETLM-DPNRWAEMF-----PCMIARTA------TTDVISSGMGGTRNGALQLMHAEL 270
              + L  D   +A+       P +  R A        +V+  G+ G+  G         
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS--G--------- 162

Query: 271 QVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDM 330
                             K      W  +DV                C       V   M
Sbjct: 163 ------------------KT-----WVALDV----------------CLSYK---VQCKM 180

Query: 331 PNGYSKVTWVEHAEYDES-----QVHQLYKPLIISGMGFGAQRWVATLQRQCECLAILMS 385
                 + W+     +        + +L     I           + ++ +   +   + 
Sbjct: 181 DFK---IFWLNLKNCNSPETVLEMLQKLL--YQIDPNWTSRSDHSSNIKLRIHSIQAELR 235

Query: 386 TSVSARDHTAITAGGRRSMLKLAQRMTDNFCAGVCASTVHKWNKLNAGNVDEDVRVM--T 443
             + ++ +          +L L      N    V  +    WN  N        +++  T
Sbjct: 236 RLLKSKPY-------ENCLLVL-----LN----VQNAKA--WNAFNLS-----CKILLTT 272

Query: 444 R-KSVDDPGEPPGIVLSAATSVWLPVSPQRLFNFLRDERLRSEWDILSN--GGPMQEMAH 500
           R K V D        LSAAT+  + +    +     DE       +L        Q++  
Sbjct: 273 RFKQVTD-------FLSAATTTHISLDHHSM-TLTPDEVK----SLLLKYLDCRPQDLPR 320

Query: 501 IAKGQDHGNCVSLLRASAINANQSSMLILQETCTDAAGSLVVYAPVDIPAMHVVMNGGDS 560
                      +  R S I  +    L   +           +  V+   +  ++   +S
Sbjct: 321 EVLT------TNPRRLSIIAESIRDGLATWDN----------WKHVNCDKLTTII---ES 361

Query: 561 AYVALLPS-------GFAIVPDG 576
           +   L P+         ++ P  
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPPS 384
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query648
2r55_A231 STAR-related lipid transfer protein 5; alpha and b 99.84
1em2_A229 MLN64 protein; beta barrel, lipid binding protein; 99.26
2pso_A237 STAR-related lipid transfer protein 13; alpha and 99.25
3p0l_A221 Steroidogenic acute regulatory protein, mitochond; 99.25
1ln1_A214 PC-TP, phosphatidylcholine transfer protein; start 99.07
1jss_A224 Stard4, cholesterol-regulated start protein 4; sta 98.97
3fo5_A258 Thioesterase, adipose associated, isoform BFIT2; o 98.82
3qsz_A189 STAR-related lipid transfer protein; structural ge 98.7
2e3n_A255 Lipid-transfer protein CERT; ceramide transfer, li 98.39
2r55_A231 STAR-related lipid transfer protein 5; alpha and b 97.38
3qsz_A189 STAR-related lipid transfer protein; structural ge 97.11
3p0l_A221 Steroidogenic acute regulatory protein, mitochond; 96.72
1jss_A224 Stard4, cholesterol-regulated start protein 4; sta 96.61
1ln1_A214 PC-TP, phosphatidylcholine transfer protein; start 96.48
1em2_A229 MLN64 protein; beta barrel, lipid binding protein; 96.32
2pso_A237 STAR-related lipid transfer protein 13; alpha and 95.93
2d4r_A147 Hypothetical protein TTHA0849; start domain, struc 95.91
3fo5_A258 Thioesterase, adipose associated, isoform BFIT2; o 94.96
2j5u_A255 MREC protein; bacterial cell shape determining pro 93.23
3tfz_A172 Cyclase; helix-GRIP, BET V1-like superfamily, bios 92.23
3tl1_A159 WHIE ORF VI, polyketide cyclase; helix-GRIP fold, 91.91
2jee_A81 YIIU; FTSZ, septum, coiled-coil, cell division, ce 91.16
1t17_A148 Conserved hypothetical protein; beta-alpha-beta-BE 90.03
3tvq_A169 Multifunctional cyclase-dehydratase-3-O-methyl TR 89.61
2e3n_A255 Lipid-transfer protein CERT; ceramide transfer, li 89.46
3p9v_A161 Uncharacterized protein; structural genomics, PSI- 83.09
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens} Back     alignment and structure
Probab=99.84  E-value=4.7e-20  Score=182.22  Aligned_cols=199  Identities=16%  Similarity=0.203  Sum_probs=155.9

Q ss_pred             hHHHHHHHHHHHHHHHhhcCCCCCeeecCCCCcccccChHHHhhhcCCCCCCCCCCCeeeeeeeeeeEEechhhHHHHhC
Q 006356          150 SMFLELALAAMDELVKMAQTDEPLWIRSFEGSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLM  229 (648)
Q Consensus       150 ~~l~~lA~~Am~Ell~la~~~eplWi~~~~~gp~evLn~~eY~~~F~~~~g~~~~g~~~EASR~~glV~m~~~~LVe~lm  229 (648)
                      ..++++|++||+||+++++.+ ..|....+..         +.+.|.+..    .+....+.|..++|.+.+.+|++.||
T Consensus        22 ~~y~~~a~~~~~~~l~~~~~~-~~W~~~~~~~---------gv~v~~~~~----~~~~~~~~k~~~~v~~~~~~v~~~l~   87 (231)
T 2r55_A           22 SMAAQMSEAVAEKMLQYRRDT-AGWKICREGN---------GVSVSWRPS----VEFPGNLYRGEGIVYGTLEEVWDCVK   87 (231)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCC-SSCEEEECCS---------SEEEEEEEC----SSSSSEEEEEEEEESSCHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHhcCC-CCCEEEEeCC---------CEEEEEEcc----CCCCCcEEEEEEEECCCHHHHHHHHH
Confidence            889999999999999999754 7898743221         123332221    12234788999999999999999997


Q ss_pred             C-----hhhhhhhcccccccceEeEEeeCCCCCCCCCceeeeeeeee--cccccccceeeEEEEeeeeecCceEEEEEEe
Q 006356          230 D-----PNRWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQ--VLSPLVPVREVNFLRFCKQHAEGVWAVVDVS  302 (648)
Q Consensus       230 D-----~~~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~--v~SPLVp~Re~~fLRyckql~~G~WaVvDvS  302 (648)
                      +     +.+|-..|.    .++.++.++.        .-.++| ++.  .++++|++|||.++||+++.++|.|+|+..|
T Consensus        88 ~~d~~~r~~Wd~~~~----~~~vle~i~~--------~~~i~~-~~~~~~~~~~v~~RDfv~~r~~~~~~~g~~vi~~~S  154 (231)
T 2r55_A           88 PAVGGLRVKWDENVT----GFEIIQSITD--------TLCVSR-TSTPSAAMKLISPRDFVDLVLVKRYEDGTISSNATH  154 (231)
T ss_dssp             C--CCSHHHHCTTCS----EEEEEEECSS--------SEEEEE-EECCCBTTTTBCCEEEEEEEEEEECTTSCEEEEEEE
T ss_pred             hhCcchhhhhccccc----eeEEEEEcCC--------CEEEEE-EEeccccCCccCCCeEEEEEEEEEcCCCEEEEEEEe
Confidence            7     889987744    4788887751        123344 333  4557999999999999999999999999999


Q ss_pred             cccccCCCCCCCcccccccCCceeEeecC--CCceEEEEEEeeeecccccccccccccccchhHHHHHHHHHHHHHHHHH
Q 006356          303 IDTIRETSGAPAFVNCRRLPSGCVVQDMP--NGYSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCECL  380 (648)
Q Consensus       303 ld~~~~~~~~~~~~r~~rlPSGclIq~~~--nG~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~RWlatLqRqcerl  380 (648)
                      ++... .|..+.++|++.++|||+||+++  +|.|+|||+.|++..-+ +|   +.++++.+..++.+|++.|+++|+.+
T Consensus       155 v~~~~-~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~lvn~~~~~~~~~~~~~Lr~~~~~~  229 (231)
T 2r55_A          155 VEHPL-CPPKPGFVRGFNHPCGCFCEPLPGEPTKTNLVTFFHTDLSGY-LP---QNVVDSFFPRSMTRFYANLQKAVKQF  229 (231)
T ss_dssp             CCCTT-SCCCTTCEEEEECSEEEEEEECC--CCCEEEEEEECEECCSS-CC---HHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred             ccCCC-CCCCCCCEEEEEEeeEEEEEEeCCCCCcEEEEEEEEeCCCCC-cc---HHHHHHHHhHhHHHHHHHHHHHHHHh
Confidence            98432 22223689999999999999998  78999999999998765 55   67899999999999999999999854
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2 Back     alignment and structure
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2 Back     alignment and structure
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens} Back     alignment and structure
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A* Back     alignment and structure
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2 Back     alignment and structure
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens} Back     alignment and structure
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV} Back     alignment and structure
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A* Back     alignment and structure
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens} Back     alignment and structure
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV} Back     alignment and structure
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens} Back     alignment and structure
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2 Back     alignment and structure
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A* Back     alignment and structure
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2 Back     alignment and structure
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2 Back     alignment and structure
>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6 Back     alignment and structure
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens} Back     alignment and structure
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes} Back     alignment and structure
>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP} Back     alignment and structure
>3tl1_A WHIE ORF VI, polyketide cyclase; helix-GRIP fold, polyketide C9-C14 aromatase/cyclase, linear beta-ketone intermediate; HET: JRO; 1.80A {Streptomyces coelicolor} PDB: 3tvr_A 2kf2_A Back     alignment and structure
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli} Back     alignment and structure
>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6 Back     alignment and structure
>3tvq_A Multifunctional cyclase-dehydratase-3-O-methyl TR TCMN; tetracenomycin, aromatase, taxifolin, dihyroquercet helix-GRIP fold; HET: DQH; 1.67A {Streptomyces glaucescens} PDB: 2rer_A 2res_A 2rez_A Back     alignment and structure
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A* Back     alignment and structure
>3p9v_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.78A {Marinobacter aquaeolei} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query648
d1jssa_199 Cholesterol-regulated Start protein 4 (Stard4). {M 99.0
d2psoa1197 Star-related lipid transfer protein 13 {Human (Hom 98.75
d1em2a_214 Lipid transport domain of Mln64 {Human (Homo sapie 98.7
d1ln1a_203 Phosphatidylcholine transfer protein {Human (Homo 98.44
d1em2a_214 Lipid transport domain of Mln64 {Human (Homo sapie 96.49
d1jssa_199 Cholesterol-regulated Start protein 4 (Stard4). {M 96.17
d1ln1a_203 Phosphatidylcholine transfer protein {Human (Homo 95.98
d2psoa1197 Star-related lipid transfer protein 13 {Human (Hom 95.38
d2d4ra1146 Hypothetical protein TTHA0849 {Thermus thermophilu 94.12
d2rera1155 Multifunctional enzyme TcmN, cyclase/aromatase dom 89.59
d1t17a_148 Hypothetical protein CC1736 {Caulobacter crescentu 82.47
>d1jssa_ d.129.3.2 (A:) Cholesterol-regulated Start protein 4 (Stard4). {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Cholesterol-regulated Start protein 4 (Stard4).
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.00  E-value=3e-09  Score=99.76  Aligned_cols=192  Identities=13%  Similarity=0.145  Sum_probs=132.2

Q ss_pred             HHHHHHHHHHHHhhcCCCCCeeecCC-CCcccccChHHHhhhcCCCCCCCCCCCeeeeeeeeeeEEechhhHHHHhCChh
Q 006356          154 ELALAAMDELVKMAQTDEPLWIRSFE-GSGRQVLNHEEYLRTFTPCIGLKPNGFVTEASRETGMVIINSLALVETLMDPN  232 (648)
Q Consensus       154 ~lA~~Am~Ell~la~~~eplWi~~~~-~gp~evLn~~eY~~~F~~~~g~~~~g~~~EASR~~glV~m~~~~LVe~lmD~~  232 (648)
                      .+|.+..++|++..+..+-.|-...+ .| ..+     |.|..        .+...-.-|+.++|...+.++++.|.|.+
T Consensus         2 ~~~~~~~~~l~~~~~~~~~~W~~~~~~~~-v~v-----~~~~~--------~~~~~~~~r~~~~i~~~~~~v~~~l~d~~   67 (199)
T d1jssa_           2 SISTKLQNTLIQYHSIEEDEWRVAKKAKD-VTV-----WRKPS--------EEFNGYLYKAQGVMDDVVNNVIDHIRPGP   67 (199)
T ss_dssp             THHHHHHHHHHHHTTSCGGGCEEEEEETT-EEE-----EEEEC--------SSSSSEEEEEEEEESSCHHHHHHHHSSST
T ss_pred             cHHHHHHHHHHHhcCcCcCCCeEEEecCC-EEE-----EEEEc--------CCCCcEEEEEEEEeCCCHHHHHHHHhChh
Confidence            46889999999999999999988443 33 122     33322        13333467999999999999999999977


Q ss_pred             hhhhhcccccccceEeEEeeCCCCCCCCCceeeeeeeee-cccccccceeeEEEEeeeeecCceEEEEEEecccccCCCC
Q 006356          233 RWAEMFPCMIARTATTDVISSGMGGTRNGALQLMHAELQ-VLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSG  311 (648)
Q Consensus       233 ~W~~~Fp~IVs~a~t~~Vis~g~~g~~~G~lqlm~aEl~-v~SPLVp~Re~~fLRyckql~~G~WaVvDvSld~~~~~~~  311 (648)
                      .+.+-.|.+ ..++.++.++.        ...++|.-+. .+-|++..|||.++|++.+.+++.+ ++.++.+...   .
T Consensus        68 ~~~~Wd~~~-~~~~~le~~~~--------~~~i~~~~~~~~~~~~v~~RD~v~~~~~~~~~~~~~-~~~~~~~~~p---~  134 (199)
T d1jssa_          68 WRLDWDRLM-TSLDVLEHFEE--------NCCVMRYTTAGQLLNIISPREFVDFSYTVGYEEGLL-SCGVSVEWSE---T  134 (199)
T ss_dssp             THHHHCSSE-EEEEEEEECST--------TEEEEEEEECCBTTTTBCCEEEEEEEEEEEETTEEE-EEEEECCCCC---C
T ss_pred             hhhhcccch-heEEEEEEcCC--------CcEEEEEEEcccCCCCcCCcEEEEEEEEEEcCCcEE-EEEEecCCCC---C
Confidence            666666653 44565555432        1233443332 4678899999999999999888854 5567766432   2


Q ss_pred             CCCcccccccCCceeEeecCCC--ceEEEEEEeeeecccccccccccccccchhHHHHHHHHHHHHH
Q 006356          312 APAFVNCRRLPSGCVVQDMPNG--YSKVTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQ  376 (648)
Q Consensus       312 ~~~~~r~~rlPSGclIq~~~nG--~skVtwVeH~e~d~~~vh~lyrpl~~Sg~afGA~RWlatLqRq  376 (648)
                      .+.++|+..+.+|++|++.++|  +|+|||+-|++.--+ +|.   -+++..+.-.--.++..|+++
T Consensus       135 ~~~~VR~~~~~~~~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP~---~lvn~~~~~~~~~~~~~Lr~~  197 (199)
T d1jssa_         135 RPEFVRGYNHPCGWFCVPLKDSPSQSLLTGYIQTDLRGM-IPQ---SAVDTAMASTLANFYSDLRKG  197 (199)
T ss_dssp             CTTSEECEECSEEEEEEEETTEEEEEEEEEEECEECCSC-CCH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEEEeeeeEEEEEcCCCCCcEEEEEEEEcCCCCC-CcH---HHHHHHHHHHHHHHHHHHHHh
Confidence            2358999999999999999988  899999999997643 432   223333333334456666554
>d2psoa1 d.129.3.2 (A:908-1104) Star-related lipid transfer protein 13 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1em2a_ d.129.3.2 (A:) Lipid transport domain of Mln64 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ln1a_ d.129.3.2 (A:) Phosphatidylcholine transfer protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1em2a_ d.129.3.2 (A:) Lipid transport domain of Mln64 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jssa_ d.129.3.2 (A:) Cholesterol-regulated Start protein 4 (Stard4). {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ln1a_ d.129.3.2 (A:) Phosphatidylcholine transfer protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2psoa1 d.129.3.2 (A:908-1104) Star-related lipid transfer protein 13 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2d4ra1 d.129.3.6 (A:2-147) Hypothetical protein TTHA0849 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2rera1 d.129.3.6 (A:1-155) Multifunctional enzyme TcmN, cyclase/aromatase domain {Streptomyces glaucescens [TaxId: 1907]} Back     information, alignment and structure
>d1t17a_ d.129.3.6 (A:) Hypothetical protein CC1736 {Caulobacter crescentus [TaxId: 155892]} Back     information, alignment and structure