Citrus Sinensis ID: 006358

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------65
MSLNWVSIFILFTTLPFTISQSPATPEAPAPAANTCNGVFLSYTYNSGSKLPPDNPKHQAYRFESTLTVLNNGLEQLKQWRAFVGFQHEEILVSASNAVLFDGNSFPASVGNGTVFAGFPMSDLKTAVMTAGDLTQMQVQVKIVGTQFGVGLRDVPMPKNISLANDGFLCSPVTRQGKSELHVCCTKDANAKSNFTVDDNFLPRQSGDLTIMYDVTRTYDSNYWAQVTVANHNPIGRLDNWKLSWDWMHDEFIYTMKGAYPYLADSSDCIYGPQGTYYRDLDFANVLNCERRPTIIDLPPTKANDTTLGLVPFCCRNGTILPPSMDPSKSTSVFQLQVFKMPPDLNRSELTPPQNWKINGTLNPNYQCGPPMRVSPSHFPDPSGGPANRTAFASWQVVCNITRPKGGSPKCCVSFSAYYNDSIVPCKTCACGCKSTSQTCSTTAPAILLPPEALLLPFENRSSLARAWADLKHRTVPNPMPCGDNCGVSINWHLHTDYSRGWTARVTIFNWDETAFPDWFAAMQFDKAAPGFEAAYSFNGTVLDGGNDTVFMQGLPGLNFLVGETDGANPEKDPRVPGKQQSVISFKKKDTPGINVPLGDGFPTKVFFNGEQCSLPSIYPTSDGNTKSSALLFSILAAAFVLLLIQQQ
ccccHHHHHHHHHHHccccccccccccccccccccccEEEEEEEEcccccccccccccccccEEEEEEEEEccHHccccEEEEEEEcccEEEEEcccEEEccccccccccccccEEEcccHHHHHHHHHHccccccEEEEEEEEEEEEccccccccccccEEEccccccccccccccccEEEEEEcccccccccccccccccccccccEEEEEEEEEEEcccEEEEEEEEccccccccccccEEEEEcccEEEEEEcccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccEEEEEEEEcccccccccccccccEEEcccccccccccccEEccccccccccccccEEEEEEEEEEEEEEcccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccEEEEEEEccccccEEEEEEEEccccccccccEEEEEccccccccEEEEEEccEEccccccEEEEEcccccHHHHHcccccccccccccccccccEEEEEcccccccccccccccccEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHcc
cccHHHHHHHHHHHHHcHcccccccccccccccccccEEEEEEEEccccEcccccHHHcccHEHEEEEEEcccccHcccEEEEEEEcccEEEEEcccEEEEccccccccccccEEEEcccHHHHHcHHHHccccHHHEEEEEEEEccccccccccccccEEEEccccccccccccccccEEEEEEEccccccccccccccccccccccEEEEEEEEEEccccEEEEEEEEcccccccccccEEEEEEcccEEEEEEccccccEcccccccEccccccccccccccccccccccEEEEccccccccccEccccccccccEEccccccHHHcEEEEEEEEEcccccccccEEEccccEEEEccccccccccccEEcccccccccccccccEEEEEEEEEEEEccccccccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccEEEEEEEEEEccccEEEEEEEEEcccccccccEEEEEccccccccEEEEEEcccccccccccHHHEcHHHHHHHHHHcccccccccccccccEEEEEEEEEcccccEEEccccccccEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHcc
MSLNWVSIFILFTtlpftisqspatpeapapaantcngVFLSYTynsgsklppdnpkhqayrFESTLTVLNNGLEQLKQWRAFVGFQHEEILVSAsnavlfdgnsfpasvgngtvfagfpmsdLKTAVMTAGDLTQMQVQVKIVGtqfgvglrdvpmpknislandgflcspvtrqgkselhVCCTkdanaksnftvddnflprqsgdltimyDVTRTYDSNYWAQVTvanhnpigrldnwklsWDWMHDEFIYTmkgaypyladssdciygpqgtyyrdldfanvlncerrptiidlpptkandttlglvpfccrngtilppsmdpskstsVFQLQvfkmppdlnrseltppqnwkingtlnpnyqcgppmrvspshfpdpsggpanrtaFASWQVVCnitrpkggspkccvsfsayyndsivpcktcacgckstsqtcsttapaillppealllpfeNRSSLARAWADLkhrtvpnpmpcgdncgvsinwhlhtdysrgwtARVTIfnwdetafpdwfaamqfdkaapgfeaaysfngtvldggndtvfmqglpglnflvgetdganpekdprvpgkqqsvisfkkkdtpginvplgdgfptkvffngeqcslpsiyptsdgntksSALLFSILAAAFVLLLIQQQ
MSLNWVSIFILFTTLPFTISQSPATPEAPAPAANTCNGVFLSYTYNSGSKLPPDNPKHQAYRFESTLTVLNNGLEQLKQWRAFVGFQHEEILVSASNAVLFDGNSFPASVGNGTVFAGFPMSDLKTAVMTAGDLTQMQVQVKIVGTQFGVGLRDVPMPKNISLANDGFLCSPVTRQGKSELHVCCTKDanaksnftvddnflprqsgdLTIMYDVTRTYDSNYWAQVTVANHNPIGRLDNWKLSWDWMHDEFIYTMKGAYPYLADSSDCIYGPQGTYYRDLDFANVLNCERRptiidlpptkandttLGLVPFCCRNGTILPPSMDPSKSTSVFQLQVFKMPPDLNRSELTPPQNWKINGTLNPNYQCGPPMRVSPSHFPDPSGGPANRTAFASWQVVCNITRPKGGSPKCCVSFSAYYNDSIVPCKTCACGCKSTSQTCSTTAPAILLPPEALLLPFENRSSLARAWADLKHRTVPNPMPCGDNCGVSINWHLHTDYSRGWTARVTIFNWDETAFPDWFAAMQFDKAAPGFEAAYSFNGTVLDGGNDTVFMQGLPGLNFLVGETDGanpekdprvpgkqqsvisfkkkdtpginvPLGDGFPTKVFFNGEQCSLPSIYPTSDGNTKSSALLFSILAAAFVLLLIQQQ
MSLNWVSIFILFTTLPFTISQSpatpeapapaaNTCNGVFLSYTYNSGSKLPPDNPKHQAYRFESTLTVLNNGLEQLKQWRAFVGFQHEEILVSASNAVLFDGNSFPASVGNGTVFAGFPMSDLKTAVMTAGDLTQMQVQVKIVGTQFGVGLRDVPMPKNISLANDGFLCSPVTRQGKSELHVCCTKDANAKSNFTVDDNFLPRQSGDLTIMYDVTRTYDSNYWAQVTVANHNPIGRLDNWKLSWDWMHDEFIYTMKGAYPYLADSSDCIYGPQGTYYRDLDFANVLNCERRPTIIDLPPTKANDTTLGLVPFCCRNGTILPPSMDPSKSTSVFQLQVFKMPPDLNRSELTPPQNWKINGTLNPNYQCGPPMRVSPSHFPDPSGGPANRTAFASWQVVCNITRPKGGSPKCCVSFSAYYNDSIVPCKTCACGCKSTSQTCSTTapaillppealllpFENRSSLARAWADLKHRTVPNPMPCGDNCGVSINWHLHTDYSRGWTARVTIFNWDETAFPDWFAAMQFDKAAPGFEAAYSFNGTVLDGGNDTVFMQGLPGLNFLVGETDGANPEKDPRVPGKQQSVISFKKKDTPGINVPLGDGFPTKVFFNGEQCSLPSIYPTSDGNTKssallfsilaaafvllliQQQ
***********************************CNGVFLSYTY**************AYRFESTLTVLNNGLEQLKQWRAFVGFQHEEILVSASNAVLFDGNSFPASVGNGTVFAGFPMSDLKTAVMTAGDLTQMQVQVKIVGTQFGVGLRDVPMPKNISLANDGFLCSPVTRQGKSELHVCCTKDANAKSNFTVDDNFLPRQSGDLTIMYDVTRTYDSNYWAQVTVANHNPIGRLDNWKLSWDWMHDEFIYTMKGAYPYLADSSDCIYGPQGTYYRDLDFANVLNCERRPTIIDLPPTKANDTTLGLVPFCCRNGTIL********************************************************************TAFASWQVVCNITRPKGGSPKCCVSFSAYYNDSIVPCKTCACGCKSTSQTCSTTAPAILLPPEALLLPFENRSSLARAWADLKHRTVPNPMPCGDNCGVSINWHLHTDYSRGWTARVTIFNWDETAFPDWFAAMQFDKAAPGFEAAYSFNGTVLDGGNDTVFMQGLPGLNFLVG*****************************GINVPLGDGFPTKVFFNGEQCSLPSIYPTSDGNTKSSALLFSILAAAFVLLLI***
***NWVSIFILFTTLPFTIS*************NTCNGVFLSYTYNSGSKLPPDNPKHQAYRFESTLTVLNNGLEQLKQWRAFVGFQHEEILVSASNAVLFDGNSFPASVGNGTVFAGFPMSDLKTAVMTAGDLTQMQVQVKIVGTQFGVGLRDVPMPKNISLANDGFLCSPVTRQGKSELHVCCTKDANAKSNFTVDDNFLPRQSGDLTIMYDVTRTYDSNYWAQVTVANHNPIGRLDNWKLSWDWMHDEFIYTMKGAYPYLADSSDCIYGPQGTYYRDLDFANVLNCERRPTIIDLPPTKANDTTLGLVPFCCRNGTILPPSMDPSKSTSVFQLQVFK*PPD*****LTPPQNWKINGTLNPNYQCGPPMRV**********GPANRTAFASWQVVCNITRPKGGSPKCCVSFSAYYNDSIVPCKTCACGC*********************LLP**NRSS****WADLKHRTVPNPMPCGDNCGVSINWHLHTDYSRGWTARVTIFNWDETAFPDWFAAMQFDKAAPGFEAAYSFNGTVLDGGNDTVFMQGLPGLNFLVGETDGANPEKDPRVPGKQQSVISFKKKD****NVPLGDGFPTKVFFNGEQCSLPSIY***********LLFSILAAAFVLLLIQQQ
MSLNWVSIFILFTTLPFTISQSPATPEAPAPAANTCNGVFLSYTYNSGSKLPPDNPKHQAYRFESTLTVLNNGLEQLKQWRAFVGFQHEEILVSASNAVLFDGNSFPASVGNGTVFAGFPMSDLKTAVMTAGDLTQMQVQVKIVGTQFGVGLRDVPMPKNISLANDGFLCSPVTRQGKSELHVCCTKDANAKSNFTVDDNFLPRQSGDLTIMYDVTRTYDSNYWAQVTVANHNPIGRLDNWKLSWDWMHDEFIYTMKGAYPYLADSSDCIYGPQGTYYRDLDFANVLNCERRPTIIDLPPTKANDTTLGLVPFCCRNGTILPPSMDPSKSTSVFQLQVFKMPPDLNRSELTPPQNWKINGTLNPNYQCGPPMRVSPSHFPDPSGGPANRTAFASWQVVCNITRPKGGSPKCCVSFSAYYNDSIVPCKTCACGCKSTSQTCSTTAPAILLPPEALLLPFENRSSLARAWADLKHRTVPNPMPCGDNCGVSINWHLHTDYSRGWTARVTIFNWDETAFPDWFAAMQFDKAAPGFEAAYSFNGTVLDGGNDTVFMQGLPGLNFLVGETDGA*************SVISFKKKDTPGINVPLGDGFPTKVFFNGEQCSLPSIYPTSDGNTKSSALLFSILAAAFVLLLIQQQ
*SLNWVSIFILFTTLPFTISQSPATPEAPAPAANTCNGVFLSYTYNSGSKLPPDNPKHQAYRFESTLTVLNNGLEQLKQWRAFVGFQHEEILVSASNAVLFDGNSFPASVGNGTVFAGFPMSDLKTAVMTAGDLTQMQVQVKIVGTQFGVGLRDVPMPKNISLANDGFLCSPVTRQGKSELHVCCTKDANAKSNFTVDDNFLPRQSGDLTIMYDVTRTYDSNYWAQVTVANHNPIGRLDNWKLSWDWMHDEFIYTMKGAYPYLADSSDCIYGPQGTYYRDLDFANVLNCERRPTIIDLPPTKANDTTLGLVPFCCRNGTILPPSMDPSKSTSVFQLQVFKMPPDLNRSELTPPQNWKINGTLNPNYQCGPPMRVSPSHFPDPSGGPANRTAFASWQVVCNITRPKGGSPKCCVSFSAYYNDSIVPCKTCACGCKSTSQTCSTT*PAILLPPEALLLPFENRSSLARAWADLKHRTVPNPMPCGDNCGVSINWHLHTDYSRGWTARVTIFNWDETAFPDWFAAMQFDKAAPGFEAAYSFNGTVLDGGNDTVFMQGLPGLNFLVGETDGANPEKDPRVPGKQQSVISFKKKDTPGINVPLGDGFPTKVFFNGEQCSLPSIYPTSDGNTKSSALLFSILAAAFVLLLIQQQ
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SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiii
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MSLNWVSIFILFTTLPFTISQSPATPEAPAPAANTCNGVFLSYTYNSGSKLPPDNPKHQAYRFESTLTVLNNGLEQLKQWRAFVGFQHEEILVSASNAVLFDGNSFPASVGNGTVFAGFPMSDLKTAVMTAGDLTQMQVQVKIVGTQFGVGLRDVPMPKNISLANDGFLCSPVTRQGKSELHVCCTKDANAKSNFTVDDNFLPRQSGDLTIMYDVTRTYDSNYWAQVTVANHNPIGRLDNWKLSWDWMHDEFIYTMKGAYPYLADSSDCIYGPQGTYYRDLDFANVLNCERRPTIIDLPPTKANDTTLGLVPFCCRNGTILPPSMDPSKSTSVFQLQVFKMPPDLNRSELTPPQNWKINGTLNPNYQCGPPMRVSPSHFPDPSGGPANRTAFASWQVVCNITRPKGGSPKCCVSFSAYYNDSIVPCKTCACGCKSTSQTCSTTAPAILLPPEALLLPFENRSSLARAWADLKHRTVPNPMPCGDNCGVSINWHLHTDYSRGWTARVTIFNWDETAFPDWFAAMQFDKAAPGFEAAYSFNGTVLDGGNDTVFMQGLPGLNFLVGETDGANPEKDPRVPGKQQSVISFKKKDTPGINVPLGDGFPTKVFFNGEQCSLPSIYPTSDGNTKSSALLFSILAAAFVLLLIQQQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query648 2.2.26 [Sep-21-2011]
Q8GZ17661 COBRA-like protein 7 OS=A yes no 0.959 0.940 0.669 0.0
Q9LIB6653 COBRA-like protein 8 OS=A no no 0.984 0.977 0.622 0.0
Q9FJ13663 COBRA-like protein 9 OS=A no no 0.983 0.960 0.604 0.0
Q9LJU0672 COBRA-like protein 10 OS= no no 0.947 0.913 0.542 0.0
Q9T045668 COBRA-like protein 11 OS= no no 0.949 0.920 0.506 0.0
Q8L8Q7441 COBRA-like protein 2 OS=A no no 0.601 0.884 0.265 8e-34
Q9SRT7452 COBRA-like protein 1 OS=A no no 0.601 0.862 0.268 1e-32
Q7XR91439 COBRA-like protein 7 OS=O no no 0.628 0.927 0.272 1e-31
Q60E70457 COBRA-like protein 3 OS=O no no 0.603 0.855 0.282 1e-30
Q9LFW3431 COBRA-like protein 4 OS=A no no 0.594 0.893 0.278 1e-30
>sp|Q8GZ17|COBL7_ARATH COBRA-like protein 7 OS=Arabidopsis thaliana GN=COBL7 PE=1 SV=2 Back     alignment and function desciption
 Score =  892 bits (2306), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/630 (66%), Positives = 506/630 (80%), Gaps = 8/630 (1%)

Query: 12  FTTLPFTISQSPAT----PEAPAPAANTCNGVFLSYTYNSGSKLPPDNPKHQAYRFESTL 67
             ++P T SQS A       +P   ++ CNGVF+SYT+  GSK+PP++  +Q YRFES +
Sbjct: 18  IVSIPLTSSQSDANTTNPSPSPPSDSDLCNGVFVSYTHTKGSKIPPNDTANQPYRFESVI 77

Query: 68  TVLNNGLEQLKQWRAFVGFQHEEILVSASNAVLFDGNSFPASVGNGTVFAGFPMSDLKTA 127
           TVLN+G ++LK WR FV F H EILVSASNAVL DG+S P SV NGTVFAG+P SDLK+A
Sbjct: 78  TVLNHGRDELKSWRVFVKFAHREILVSASNAVLSDGSSLPVSVENGTVFAGYPSSDLKSA 137

Query: 128 VMTAGDLTQMQVQVKIVGTQFGVGLRDVPMPKNISLANDGFLCSPVTRQGKSELHVCCTK 187
           + TAGD+TQMQ +V++VGTQFGV   +VP+PKNI+LA DG+ C   T++G + L VCC  
Sbjct: 138 IQTAGDVTQMQARVELVGTQFGVAPPNVPLPKNITLATDGWKCPKATQKGTNVLQVCCIP 197

Query: 188 DANAKSNFTVDDNFLPRQSGDLTIMYDVTRTYDSNYWAQVTVANHNPIGRLDNWKLSWDW 247
           D +  +   +D+ FLPR+ GDLTIMYDV R+Y SNY AQVT+ NHNP+GRLDNWKLS+DW
Sbjct: 198 DPDYDNREIIDNEFLPRKDGDLTIMYDVVRSYSSNYMAQVTMENHNPLGRLDNWKLSFDW 257

Query: 248 MHDEFIYTMKGAYPYLADSSDCIYGPQGTYYRDLDFANVLNCERRPTIIDLPPTKANDTT 307
           M DEFIYTMKGAYP + DSSDC+ GPQ  +Y+DLDF+NVL+C RRPT+IDLPPTK ND+T
Sbjct: 258 MRDEFIYTMKGAYPSIVDSSDCVDGPQAKHYQDLDFSNVLSCARRPTVIDLPPTKYNDST 317

Query: 308 LGLVPFCCRNGTILPPSMDPSKSTSVFQLQVFKMPPDLNRSELTPPQNWKINGTLNPNYQ 367
            GL+PFCCRNGTILP SMDPSKS+SVFQ+QV+KMPPDLN S L+PPQNW+INGTLNP+Y+
Sbjct: 318 FGLIPFCCRNGTILPRSMDPSKSSSVFQMQVYKMPPDLNISALSPPQNWRINGTLNPDYK 377

Query: 368 CGPPMRVSPSHFPDPSGGPANRTAFASWQVVCNITRPKGGSPKCCVSFSAYYNDSIVPCK 427
           CGPP+RVSPS F DPSG P+NRTAFASWQVVCNIT+PK  SP+CCVSFSAY+NDSIVPCK
Sbjct: 378 CGPPVRVSPSQFVDPSGLPSNRTAFASWQVVCNITQPKDASPRCCVSFSAYFNDSIVPCK 437

Query: 428 TCACGCKS--TSQTCSTTAPAILLPPEALLLPFENRSSLARAWADLKHRTVPNPMPCGDN 485
           TCACGC S   ++ CS TAP++LLP +ALL+PFENR+ L  AWA LK R VPNPMPCGDN
Sbjct: 438 TCACGCSSNKAARACSATAPSLLLPQQALLVPFENRTELTVAWAYLKQRPVPNPMPCGDN 497

Query: 486 CGVSINWHLHTDYSRGWTARVTIFNWDETAFPDWFAAMQFDKAAPGFEAAYSFNGTV--L 543
           CGVSINWHL TDY  GWTARVT+FNW ET F DWF A+Q   AAPGFE AYSFN +   +
Sbjct: 498 CGVSINWHLATDYRGGWTARVTVFNWGETDFVDWFTAVQMKNAAPGFEKAYSFNASTIGI 557

Query: 544 DGGNDTVFMQGLPGLNFLVGETDGANPEKDPRVPGKQQSVISFKKKDTPGINVPLGDGFP 603
           +G N+T+FM+GLPGLN+LV E DG NP K+PR+PGKQQSV+SF KK TPGINVP GDGFP
Sbjct: 558 NGKNNTIFMEGLPGLNYLVAERDGENPLKNPRIPGKQQSVMSFTKKLTPGINVPGGDGFP 617

Query: 604 TKVFFNGEQCSLPSIYPTSDGNTKSSALLF 633
           +KVFFNGE+CSLP+I P      +    +F
Sbjct: 618 SKVFFNGEECSLPTILPMRSSQHRKHISVF 647

Arabidopsis thaliana (taxid: 3702)
>sp|Q9LIB6|COBL8_ARATH COBRA-like protein 8 OS=Arabidopsis thaliana GN=COBL8 PE=2 SV=1 Back     alignment and function description
>sp|Q9FJ13|COBL9_ARATH COBRA-like protein 9 OS=Arabidopsis thaliana GN=COBL9 PE=2 SV=1 Back     alignment and function description
>sp|Q9LJU0|CBL10_ARATH COBRA-like protein 10 OS=Arabidopsis thaliana GN=COBL10 PE=2 SV=1 Back     alignment and function description
>sp|Q9T045|CBL11_ARATH COBRA-like protein 11 OS=Arabidopsis thaliana GN=COBL11 PE=2 SV=2 Back     alignment and function description
>sp|Q8L8Q7|COBL2_ARATH COBRA-like protein 2 OS=Arabidopsis thaliana GN=COBL2 PE=1 SV=2 Back     alignment and function description
>sp|Q9SRT7|COBL1_ARATH COBRA-like protein 1 OS=Arabidopsis thaliana GN=COBL1 PE=2 SV=1 Back     alignment and function description
>sp|Q7XR91|COBL7_ORYSJ COBRA-like protein 7 OS=Oryza sativa subsp. japonica GN=BC1LP1 PE=3 SV=2 Back     alignment and function description
>sp|Q60E70|COBL3_ORYSJ COBRA-like protein 3 OS=Oryza sativa subsp. japonica GN=BC1L4 PE=2 SV=1 Back     alignment and function description
>sp|Q9LFW3|COBL4_ARATH COBRA-like protein 4 OS=Arabidopsis thaliana GN=COBL4 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query648
224110252650 predicted protein [Populus trichocarpa] 0.993 0.990 0.733 0.0
255556282646 Protein COBRA precursor, putative [Ricin 0.973 0.976 0.748 0.0
225431865651 PREDICTED: COBRA-like protein 7 [Vitis v 0.979 0.975 0.730 0.0
449528489650 PREDICTED: COBRA-like protein 7-like [Cu 0.983 0.98 0.690 0.0
449432894650 PREDICTED: COBRA-like protein 7-like [Cu 0.983 0.98 0.687 0.0
356521813643 PREDICTED: COBRA-like protein 7-like [Gl 0.913 0.920 0.729 0.0
297800554658 ATSEB1 [Arabidopsis lyrata subsp. lyrata 0.941 0.927 0.699 0.0
313184319 1135 putative COBL7 (COBRA-LIKE 7) [Malus x d 0.930 0.531 0.704 0.0
18414592661 COBRA-like protein 7 [Arabidopsis thalia 0.959 0.940 0.669 0.0
356532537650 PREDICTED: COBRA-like protein 7-like [Gl 0.998 0.995 0.630 0.0
>gi|224110252|ref|XP_002315461.1| predicted protein [Populus trichocarpa] gi|118485798|gb|ABK94747.1| unknown [Populus trichocarpa] gi|222864501|gb|EEF01632.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1024 bits (2647), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/650 (73%), Positives = 567/650 (87%), Gaps = 6/650 (0%)

Query: 1   MSLNWVSIFILFTTLPFTISQSPATPEAPAPAANTCNGVFLSYTYNSGSKLPPDNPKHQA 60
           ++LN +  F +F T+PF  SQ+P TPEAPAPA++TCNG+FLSY YN GS++ P +P  Q 
Sbjct: 4   LTLNLL-FFFIFATIPFANSQTP-TPEAPAPASSTCNGIFLSYQYNGGSQIKPTDPTLQP 61

Query: 61  YRFESTLTVLNNGLEQLKQWRAFVGFQHEEILVSASNAVLFDGNSFPASVGNGTVFAGFP 120
           YRF+STLTV NNG ++LK W+ FVGFQ++E+LVSASNAVL DG + PA+VGNGTVFAGFP
Sbjct: 62  YRFKSTLTVQNNGRDELKSWKVFVGFQNDELLVSASNAVLADGTTLPAAVGNGTVFAGFP 121

Query: 121 MSDLKTAVMTAGDLTQMQVQVKIVGTQFGVGLRDVPMPKNISLANDGFLCSPVTRQGKSE 180
           M+DLKTA+ TAGD TQ  VQV+ +GTQFGV L+DVP P NISLANDGF+C   T++G S 
Sbjct: 122 MTDLKTAIETAGDDTQTSVQVQFLGTQFGVPLKDVPWPSNISLANDGFVCPATTKEG-SV 180

Query: 181 LHVCCTKDANAKSNFTVDDNFLPRQSGDLTIMYDVTRTYDSNYWAQVTVANHNPIGRLDN 240
           + VCCT+D   K+N T+D+ FLPRQ+GDLTIMYDV RTYDS+YWAQV++ANHNP+GRLDN
Sbjct: 181 MFVCCTRDPKFKTNITLDEEFLPRQNGDLTIMYDVIRTYDSSYWAQVSIANHNPLGRLDN 240

Query: 241 WKLSWDWMHDEFIYTMKGAYPYLADSSDCIYGPQGTYYRDLDFANVLNCERRPTIIDLPP 300
           WKLSWDWM DEFI +MKGAYPY+ DS+DCI+GPQG YY +LDF+NVLNCERRPTI+DLPP
Sbjct: 241 WKLSWDWMKDEFINSMKGAYPYILDSTDCIFGPQGKYYGELDFSNVLNCERRPTIVDLPP 300

Query: 301 TKANDTTLGLVPFCCRNGTILPPSMDPSKSTSVFQLQVFKMPPDLNRSELTPPQNWKING 360
           TKANDTTLGL+PFCCRNGTILPPSMDPSKSTS FQLQVFKMPPDLNRS+++PPQNWKING
Sbjct: 301 TKANDTTLGLIPFCCRNGTILPPSMDPSKSTSAFQLQVFKMPPDLNRSQISPPQNWKING 360

Query: 361 TLNPNYQCGPPMRVSPSHFPDPSGGPANRTAFASWQVVCNITRPKGGSPKCCVSFSAYYN 420
           TLNP+YQCGPP+RVSPS FPDPSG PAN+TA ASWQVVCNIT PKG SP+CCVSFSAYYN
Sbjct: 361 TLNPDYQCGPPVRVSPSQFPDPSGLPANKTAVASWQVVCNITHPKGVSPRCCVSFSAYYN 420

Query: 421 DSIVPCKTCACGCKS-TSQTCSTTAPAILLPPEALLLPFENRSSLARAWADLKHRTVPNP 479
           DS++PC TCACGC S T++TCS TAPA+LLPP+ALL+P+ENR++++ AW+ LKHR VPNP
Sbjct: 421 DSVIPCNTCACGCPSNTARTCSATAPAVLLPPQALLVPYENRTAMSVAWSALKHRAVPNP 480

Query: 480 MPCGDNCGVSINWHLHTDYSRGWTARVTIFNWDETAFPDWFAAMQFDKAAPGFEAAYSFN 539
            PC DNCGVSINWHL TDY+RGW+AR+T+FNW ET+FPDWFAA+Q DKAA GFEA YSFN
Sbjct: 481 FPCADNCGVSINWHLFTDYNRGWSARITLFNWQETSFPDWFAAVQLDKAAAGFEAMYSFN 540

Query: 540 GTVL--DGGNDTVFMQGLPGLNFLVGETDGANPEKDPRVPGKQQSVISFKKKDTPGINVP 597
           G++L  DG N+T+ M+GLPGLN+LV ETDGA+P+KDPRVPGKQQ+VISF KK+ PG+N+ 
Sbjct: 541 GSMLEMDGVNNTILMEGLPGLNYLVAETDGASPQKDPRVPGKQQTVISFTKKNIPGVNIA 600

Query: 598 LGDGFPTKVFFNGEQCSLPSIYPTSDGNTKSSALLFSILAAAFVLLLIQQ 647
            GDGFPTKVFFNGE+CSLPSIYPTS+ N K S ++ SIL AA V+LLIQQ
Sbjct: 601 AGDGFPTKVFFNGEECSLPSIYPTSNSNGKGSTMIVSILLAAVVVLLIQQ 650

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255556282|ref|XP_002519175.1| Protein COBRA precursor, putative [Ricinus communis] gi|223541490|gb|EEF43039.1| Protein COBRA precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225431865|ref|XP_002275330.1| PREDICTED: COBRA-like protein 7 [Vitis vinifera] gi|296083290|emb|CBI22926.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449528489|ref|XP_004171237.1| PREDICTED: COBRA-like protein 7-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449432894|ref|XP_004134233.1| PREDICTED: COBRA-like protein 7-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356521813|ref|XP_003529545.1| PREDICTED: COBRA-like protein 7-like [Glycine max] Back     alignment and taxonomy information
>gi|297800554|ref|XP_002868161.1| ATSEB1 [Arabidopsis lyrata subsp. lyrata] gi|297313997|gb|EFH44420.1| ATSEB1 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|313184319|emb|CBL94184.1| putative COBL7 (COBRA-LIKE 7) [Malus x domestica] Back     alignment and taxonomy information
>gi|18414592|ref|NP_567484.1| COBRA-like protein 7 [Arabidopsis thaliana] gi|34222586|sp|Q8GZ17.2|COBL7_ARATH RecName: Full=COBRA-like protein 7; Flags: Precursor gi|2244970|emb|CAB10391.1| hypothetical protein [Arabidopsis thaliana] gi|2326365|emb|CAA74765.1| putative cell wall protein [Arabidopsis thaliana] gi|7268361|emb|CAB78654.1| hypothetical protein [Arabidopsis thaliana] gi|332658295|gb|AEE83695.1| COBRA-like protein 7 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356532537|ref|XP_003534828.1| PREDICTED: COBRA-like protein 7-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query648
TAIR|locus:2130100661 COBL7 "AT4G16120" [Arabidopsis 0.942 0.924 0.663 1.3e-235
TAIR|locus:2093673653 COBL8 "COBRA-like protein 8 pr 0.955 0.947 0.617 1.1e-220
TAIR|locus:2155889663 SHV2 "SHAVEN 2" [Arabidopsis t 0.956 0.935 0.591 4.9e-211
TAIR|locus:2085785672 COBL10 "COBRA-like protein 10 0.910 0.877 0.541 2.3e-188
TAIR|locus:2136452668 COBL11 "COBRA-like protein 11 0.899 0.872 0.508 3.6e-176
TAIR|locus:2024377454 COBL6 "AT1G09790" [Arabidopsis 0.214 0.306 0.382 3.7e-25
TAIR|locus:2173532456 COB "AT5G60920" [Arabidopsis t 0.467 0.664 0.270 8.5e-25
TAIR|locus:2076507452 COBL1 "COBRA-like protein 1 pr 0.430 0.617 0.282 3e-23
TAIR|locus:2143151431 IRX6 "IRREGULAR XYLEM 6" [Arab 0.538 0.809 0.244 7.1e-20
TAIR|locus:2086601441 COBL2 "AT3G29810" [Arabidopsis 0.345 0.507 0.286 8.8e-19
TAIR|locus:2130100 COBL7 "AT4G16120" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2272 (804.8 bits), Expect = 1.3e-235, P = 1.3e-235
 Identities = 411/619 (66%), Positives = 488/619 (78%)

Query:    10 ILFTTLPFTISQSXXXXXXXX----XXXNTCNGVFLSYTYNSGSKLPPDNPKHQAYRFES 65
             +L  ++P T SQS               + CNGVF+SYT+  GSK+PP++  +Q YRFES
Sbjct:    16 LLIVSIPLTSSQSDANTTNPSPSPPSDSDLCNGVFVSYTHTKGSKIPPNDTANQPYRFES 75

Query:    66 TLTVLNNGLEQLKQWRAFVGFQHEEILVSASNAVLFDGNSFPASVGNGTVFAGFPMSDLK 125
              +TVLN+G ++LK WR FV F H EILVSASNAVL DG+S P SV NGTVFAG+P SDLK
Sbjct:    76 VITVLNHGRDELKSWRVFVKFAHREILVSASNAVLSDGSSLPVSVENGTVFAGYPSSDLK 135

Query:   126 TAVMTAGDLTQMQVQVKIVGTQFGVGLRDVPMPKNISLANDGFLCSPVTRQGKSELHVCC 185
             +A+ TAGD+TQMQ +V++VGTQFGV   +VP+PKNI+LA DG+ C   T++G + L VCC
Sbjct:   136 SAIQTAGDVTQMQARVELVGTQFGVAPPNVPLPKNITLATDGWKCPKATQKGTNVLQVCC 195

Query:   186 TKDANAKSNFTVDDNFLPRQSGDLTIMYDVTRTYDSNYWAQVTVANHNPIGRLDNWKLSW 245
               D +  +   +D+ FLPR+ GDLTIMYDV R+Y SNY AQVT+ NHNP+GRLDNWKLS+
Sbjct:   196 IPDPDYDNREIIDNEFLPRKDGDLTIMYDVVRSYSSNYMAQVTMENHNPLGRLDNWKLSF 255

Query:   246 DWMHDEFIYTMKGAYPYLADSSDCIYGPQGTYYRDLDFANVLNCERRPTIIDLPPTKAND 305
             DWM DEFIYTMKGAYP + DSSDC+ GPQ  +Y+DLDF+NVL+C RRPT+IDLPPTK ND
Sbjct:   256 DWMRDEFIYTMKGAYPSIVDSSDCVDGPQAKHYQDLDFSNVLSCARRPTVIDLPPTKYND 315

Query:   306 TTLGLVPFCCRNGTILPPSMDPSKSTSVFQLQVFKMPPDLNRSELTPPQNWKINGTLNPN 365
             +T GL+PFCCRNGTILP SMDPSKS+SVFQ+QV+KMPPDLN S L+PPQNW+INGTLNP+
Sbjct:   316 STFGLIPFCCRNGTILPRSMDPSKSSSVFQMQVYKMPPDLNISALSPPQNWRINGTLNPD 375

Query:   366 YQCGPPMRVSPSHFPDPSGGPANRTAFASWQVVCNITRPKGGSPKCCVSFSAYYNDSIVP 425
             Y+CGPP+RVSPS F DPSG P+NRTAFASWQVVCNIT+PK  SP+CCVSFSAY+NDSIVP
Sbjct:   376 YKCGPPVRVSPSQFVDPSGLPSNRTAFASWQVVCNITQPKDASPRCCVSFSAYFNDSIVP 435

Query:   426 CKTCACGCKST--SQTCSTTXXXXXXXXXXXXXXFENRSSLARAWADLKHRTVPNPMPCG 483
             CKTCACGC S   ++ CS T              FENR+ L  AWA LK R VPNPMPCG
Sbjct:   436 CKTCACGCSSNKAARACSATAPSLLLPQQALLVPFENRTELTVAWAYLKQRPVPNPMPCG 495

Query:   484 DNCGVSINWHLHTDYSRGWTARVTIFNWDETAFPDWFAAMQFDKAAPGFEAAYSFNGTVL 543
             DNCGVSINWHL TDY  GWTARVT+FNW ET F DWF A+Q   AAPGFE AYSFN + +
Sbjct:   496 DNCGVSINWHLATDYRGGWTARVTVFNWGETDFVDWFTAVQMKNAAPGFEKAYSFNASTI 555

Query:   544 --DGGNDTVFMQGLPGLNFLVGETDGANPEKDPRVPGKQQSVISFKKKDTPGINVPLGDG 601
               +G N+T+FM+GLPGLN+LV E DG NP K+PR+PGKQQSV+SF KK TPGINVP GDG
Sbjct:   556 GINGKNNTIFMEGLPGLNYLVAERDGENPLKNPRIPGKQQSVMSFTKKLTPGINVPGGDG 615

Query:   602 FPTKVFFNGEQCSLPSIYP 620
             FP+KVFFNGE+CSLP+I P
Sbjct:   616 FPSKVFFNGEECSLPTILP 634
GO:0003674 "molecular_function" evidence=ND
GO:0005886 "plasma membrane" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0031225 "anchored to membrane" evidence=TAS
GO:0046658 "anchored to plasma membrane" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0005768 "endosome" evidence=IDA
GO:0005802 "trans-Golgi network" evidence=IDA
GO:0005783 "endoplasmic reticulum" evidence=ISS
TAIR|locus:2093673 COBL8 "COBRA-like protein 8 precursor" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2155889 SHV2 "SHAVEN 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2085785 COBL10 "COBRA-like protein 10 precursor" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2136452 COBL11 "COBRA-like protein 11 precursor" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024377 COBL6 "AT1G09790" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2173532 COB "AT5G60920" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076507 COBL1 "COBRA-like protein 1 precursor" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2143151 IRX6 "IRREGULAR XYLEM 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086601 COBL2 "AT3G29810" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8GZ17COBL7_ARATHNo assigned EC number0.66980.95980.9409yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_X0013
SubName- Full=Putative uncharacterized protein; (650 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query648
pfam04833169 pfam04833, COBRA, COBRA-like protein 4e-78
>gnl|CDD|218285 pfam04833, COBRA, COBRA-like protein Back     alignment and domain information 
 Score =  245 bits (627), Expect = 4e-78
 Identities = 86/183 (46%), Positives = 112/183 (61%), Gaps = 16/183 (8%)

Query: 223 YWAQVTVANHNPIGRLDN--WKLSWDWMHDEFIYTMKGAYPYLADSSDCIYGPQGTYYRD 280
           Y AQVT+ N+ P   +DN  WKLSW+W   E I++M+GAY    +  DC       +Y+D
Sbjct: 1   YVAQVTIENYQPYRHIDNPGWKLSWEWAKKEVIWSMRGAYT--TEQGDC-----SKFYKD 53

Query: 281 LDFANVLNCERRPTIIDLPPTKANDTTLGLVPFCCRNGTILPPSMDPSKSTSVFQLQVFK 340
            DF +   C++RPTI+DLPP    D  +     CC+NG +LP S DP+KS S FQ+ V K
Sbjct: 54  GDFPH--CCKKRPTIVDLPPGTPYDQQIAN---CCKNGVLLPRSQDPAKSVSAFQMSVGK 108

Query: 341 MPPDLNRSELTPPQNWKINGTLNPNYQCGPPMRVSPSHFPDPSGGPANRTAFASWQVVCN 400
            PPD NR  + PPQN+ I G  NP Y CGP +RVSP+ FPDP  G     A A+WQV CN
Sbjct: 109 APPDTNRKTVRPPQNFTIKG-PNPGYTCGPAVRVSPTRFPDPD-GRRTTQALATWQVTCN 166

Query: 401 ITR 403
            ++
Sbjct: 167 YSQ 169

Family of plant proteins are designated COBRA-like (COBL) proteins. The 12 Arabidopsis members of the family are all GPI-liked. Some members of this family are annotated as phytochelatin synthase, but these annotations are incorrect. Length = 169

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 648
PF04833169 COBRA: COBRA-like protein; InterPro: IPR006918 In 100.0
PF00553101 CBM_2: Cellulose binding domain; InterPro: IPR0019 95.1
PF04833169 COBRA: COBRA-like protein; InterPro: IPR006918 In 94.65
PF00553101 CBM_2: Cellulose binding domain; InterPro: IPR0019 84.49
>PF04833 COBRA: COBRA-like protein; InterPro: IPR006918 In Arabidopsis thaliana (Mouse-ear cress) members of the family are all extracellular glycosyl-phosphatidyl inositol-anchored proteins (GPI-linked) [] Back     alignment and domain information 
Probab=100.00  E-value=4.6e-79  Score=579.33  Aligned_cols=167  Identities=45%  Similarity=0.919  Sum_probs=159.0

Q ss_pred             eEEEEEEeccCccCCCC--CceeeeeEcCCeeeEEecCceeeecCCCCCcCCCCCcccccCCCCccccccCCCeEeeCCC
Q 006358          223 YWAQVTVANHNPIGRLD--NWKLSWDWMHDEFIYTMKGAYPYLADSSDCIYGPQGTYYRDLDFANVLNCERRPTIIDLPP  300 (648)
Q Consensus       223 Y~A~VTi~N~q~yr~id--gW~L~W~W~~~E~IwsM~GA~~te~dqgdCs~g~~g~~yk~~dfs~ph~C~k~P~IvDLpP  300 (648)
                      |+|+|||+|||+|||||  ||+|||+|+|+||||+|+|||++|  ||||+     +||+++  ++||||+|+|+||||||
T Consensus         1 Y~A~VTi~N~~~yr~id~pgW~L~W~W~~~E~IwsM~GA~~td--qgdCs-----~~~~~~--~~ph~C~k~P~IvDLpp   71 (169)
T PF04833_consen    1 YVAQVTISNYQPYRHIDNPGWNLGWTWAKKEFIWSMKGAQTTD--QGDCS-----KFYKDG--DFPHCCKKRPTIVDLPP   71 (169)
T ss_pred             CEEEEEEecCCeecccCCCCceEeeEEcCCEEEEEeeCceecc--CCccc-----ccccCC--CCCcccCCCCEEEeCCC
Confidence            99999999999999999  599999999999999999999995  89995     577764  56789999999999999


Q ss_pred             CCCCCccCCccCccccCceecCCCCCCCCCcceEEEEEeecCCCCCCCccCCCCCeEEcCCCCCCcccCCCeeeCCCccC
Q 006358          301 TKANDTTLGLVPFCCRNGTILPPSMDPSKSTSVFQLQVFKMPPDLNRSELTPPQNWKINGTLNPNYQCGPPMRVSPSHFP  380 (648)
Q Consensus       301 ~~~~d~q~g~i~nCCr~GvL~p~~qDps~s~SaFQm~Vgk~pp~~Nrt~v~pP~Nf~l~gp~gPgYtCG~p~~V~Pt~f~  380 (648)
                      |++||+|+   +||||||||+||+|||+||+|+|||+||++||++|+++++||+||+|++| ||||+||+|++|+||+|+
T Consensus        72 ~~~~n~qi---~nCCrgG~l~~~~~Dps~s~S~FQm~Vg~~pp~~~~~~~~~P~nf~l~~~-~pgYtCg~~~~V~pT~f~  147 (169)
T PF04833_consen   72 GTPYNQQI---GNCCRGGVLSSWAQDPSKSVSAFQMSVGKAPPGTNNTTVKPPQNFTLGGP-GPGYTCGPPKRVSPTVFP  147 (169)
T ss_pred             CCCCcccc---ccccCCCEECCcccChhhCceEEEEEEeEeeccCCCceecCCcceEEcCC-CCCcCCCCcceeCCceee
Confidence            99999995   58999999999999999999999999999999998888999999999996 999999999999999999


Q ss_pred             CCCCCCceeeEeeEEeeeeeeec
Q 006358          381 DPSGGPANRTAFASWQVVCNITR  403 (648)
Q Consensus       381 dpdgl~r~tqAl~TWqVtCnySq  403 (648)
                      |+|| ||+|||||||||||||||
T Consensus       148 ~~~g-~r~t~A~~TWqvtC~ysq  169 (169)
T PF04833_consen  148 DPDG-RRTTQALMTWQVTCNYSQ  169 (169)
T ss_pred             CCCC-CEEEEEEEEEeEEEEeeC
Confidence            9999 999999999999999997

The type example of the family is COBRA (Q94KT8 from SWISSPROT) and the family is generally annotated as COBRA-like (COBL). COBRA is involved in determining the orientation of cell expansion, probably by playing an important role in cellulose deposition. It may act by recruiting cellulose synthesizing complexes to discrete positions on the cell surface. Some members of this family are annotated as phytochelatin synthase, but these annotations are incorrect [].
>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3 Back     alignment and domain information
>PF04833 COBRA: COBRA-like protein; InterPro: IPR006918 In Arabidopsis thaliana (Mouse-ear cress) members of the family are all extracellular glycosyl-phosphatidyl inositol-anchored proteins (GPI-linked) [] Back     alignment and domain information
>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query648
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-08
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 54.5 bits (130), Expect = 9e-08
 Identities = 61/408 (14%), Positives = 111/408 (27%), Gaps = 136/408 (33%)

Query: 22  SPATPEAPAPAANTCNGVFLSY---TYNSGSKLPPDNPKHQAYRFESTLTVLNNGLEQL- 77
           SP   E   P+  T    ++      YN        N      R +     L   L +L 
Sbjct: 96  SPIKTEQRQPSMMTRM--YIEQRDRLYNDNQVFAKYN----VSRLQ-PYLKLRQALLELR 148

Query: 78  --------------KQWRAFVGFQHEEILVSASNAVL--FDGNSFPASVGNGTVFAGFPM 121
                         K W A        + V  S  V    D   F  ++ N       P 
Sbjct: 149 PAKNVLIDGVLGSGKTWVA--------LDVCLSYKVQCKMDFKIFWLNLKNCNS----PE 196

Query: 122 SDLKTAVMTAGDLTQMQVQVKIVGTQFGVGLRDVPMPKN-ISLANDGFLCSPVTRQGKSE 180
           + L+        L ++  Q+    T       ++ +  + I       L S   +  ++ 
Sbjct: 197 TVLEM-------LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS---KPYENC 246

Query: 181 L----HVC-----------C-----TKD--------ANAKSNFTVDDN---FLPRQSGDL 209
           L    +V            C     T+         A   ++ ++D +     P +   L
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306

Query: 210 TIMYDVTRTYD-------------SNYWAQVTVANHNPIGRLDNWKLSWDWMHDEFI--- 253
            + Y   R  D             S     +     + +   DNWK          I   
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESI----RDGLATWDNWKHVNCDKLTTIIESS 362

Query: 254 ------YTMKGAYPYLA---DSSD------CIYGPQGTYYRDLDFANVLN----CERRP- 293
                    +  +  L+    S+        +          +   N L+     E++P 
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422

Query: 294 ----TI----IDLPPTKANDTTL--GLV-----PFCCRNGTILPPSMD 326
               +I    ++L     N+  L   +V     P    +  ++PP +D
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query648
3ndz_E107 Endoglucanase D; cellotriose, xylanase, carbohydra 95.3
3icg_A515 Endoglucanase D; cellulase, xylanase, carbohydrate 93.04
1exg_A110 EXO-1,4-beta-D-glycanase; cellulose binding domain 93.01
1e5b_A87 Xylanase D; hydrolase, xylan binding domain, beta- 92.25
2cwr_A103 Chitinase; chitin-binding domain, endoglucanase, h 91.01
1heh_C88 Endo-1,4-beta-xylanase D; hydrolase(xylan degradat 85.17
3ndz_E107 Endoglucanase D; cellotriose, xylanase, carbohydra 83.16
1exg_A110 EXO-1,4-beta-D-glycanase; cellulose binding domain 82.84
>3ndz_E Endoglucanase D; cellotriose, xylanase, carbohydrate binding D glucanase, hydrolase; HET: CT3; 2.08A {Clostridium cellulovorans} PDB: 3ndy_E* Back     alignment and structure
Probab=95.30  E-value=0.039  Score=48.91  Aligned_cols=54  Identities=22%  Similarity=0.406  Sum_probs=46.5

Q ss_pred             EEEEEEEEEeeCCCeEEEEEEeccCccCCCCCceeeeeEcCCeeeEEecCceeee
Q 006358          209 LTIMYDVTRTYDSNYWAQVTVANHNPIGRLDNWKLSWDWMHDEFIYTMKGAYPYL  263 (648)
Q Consensus       209 iTI~wDV~q~~~~~Y~A~VTi~N~q~yr~idgW~L~W~W~~~E~IwsM~GA~~te  263 (648)
                      .++.|.|.+--.+||.|.|||.|.-- ..|++|+|+|++..++-|-++..|..+.
T Consensus         3 c~v~y~v~~~W~~Gf~~~vtVtN~g~-~~i~gWtv~~~~p~g~~it~~Wna~~s~   56 (107)
T 3ndz_E            3 VEVTYAITNSWGSGASVNVTIKNNGT-TPINGWTLKWTMPINQTITNMWSASFVA   56 (107)
T ss_dssp             EEEEEEEEEECSSEEEEEEEEEECSS-SCEESCEEEEECCTTEEEEEEESEEEEE
T ss_pred             cEEEEEEcccCCCCEEEEEEEEeCCC-CcccCcEEEEEcCCCCEEecccceEEEe
Confidence            47899998888999999999999743 3478999999999999999999997654
>1exg_A EXO-1,4-beta-D-glycanase; cellulose binding domain, cellulose degradation; NMR {Cellulomonas fimi} SCOP: b.2.2.1 PDB: 1exh_A Back     alignment and structure
>1e5b_A Xylanase D; hydrolase, xylan binding domain, beta-sheet; NMR {Cellulomonas fimi} SCOP: b.2.2.1 PDB: 1e5c_A 1xbd_A 2xbd_A Back     alignment and structure
>2cwr_A Chitinase; chitin-binding domain, endoglucanase, hyperthermophilic, hydrolase; 1.70A {Pyrococcus furiosus} PDB: 2czn_A Back     alignment and structure
>1heh_C Endo-1,4-beta-xylanase D; hydrolase(xylan degradation), hydrolase, xylan binding domain, beta-sheet; NMR {Cellulomonas fimi} SCOP: b.2.2.1 PDB: 1hej_C Back     alignment and structure
>3ndz_E Endoglucanase D; cellotriose, xylanase, carbohydrate binding D glucanase, hydrolase; HET: CT3; 2.08A {Clostridium cellulovorans} PDB: 3ndy_E* Back     alignment and structure
>1exg_A EXO-1,4-beta-D-glycanase; cellulose binding domain, cellulose degradation; NMR {Cellulomonas fimi} SCOP: b.2.2.1 PDB: 1exh_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query648
d1exha_110 Exo-1,4-beta-D-glycanase (cellulase, xylanase), ce 96.43
d1hehc_88 Endo-1,4-beta xylanase D, xylan binding domain, XB 93.92
d1e5ba_87 Endo-1,4-beta xylanase D, xylan binding domain, XB 92.67
d1exha_110 Exo-1,4-beta-D-glycanase (cellulase, xylanase), ce 86.86
>d1exha_ b.2.2.1 (A:) Exo-1,4-beta-D-glycanase (cellulase, xylanase), cellulose-binding domain, CBD {Cellulomonas fimi [TaxId: 1708]} Back     information, alignment and structure
class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: Carbohydrate-binding domain
family: Cellulose-binding domain family II
domain: Exo-1,4-beta-D-glycanase (cellulase, xylanase), cellulose-binding domain, CBD
species: Cellulomonas fimi [TaxId: 1708]

Probab=96.43  E-value=0.0024  Score=54.84  Aligned_cols=56  Identities=16%  Similarity=0.334  Sum_probs=48.5

Q ss_pred             CCCEEEEEEEEEeeCCCeEEEEEEeccCccCCCCCceeeeeEcCCeeeEEecCceeee
Q 006358          206 SGDLTIMYDVTRTYDSNYWAQVTVANHNPIGRLDNWKLSWDWMHDEFIYTMKGAYPYL  263 (648)
Q Consensus       206 ~GniTI~wDV~q~~~~~Y~A~VTi~N~q~yr~idgW~L~W~W~~~E~IwsM~GA~~te  263 (648)
                      .+..++.|.+-+| .+||.|.|||.|... .-|+||+|+|++..+|-|-++.+|..+.
T Consensus         5 p~~c~v~y~~n~W-~~Gf~~~vtVtN~~~-~~~~gW~v~~~~p~g~~i~~~Wna~~~~   60 (110)
T d1exha_           5 PAGCQVLWGVNQW-NTGFTANVTVKNTSS-APVDGWTLTFSFPSGQQVTQAWSSTVTQ   60 (110)
T ss_dssp             CCCEEEECCEEEC-SSCEEEEEEEEECSS-SCEESEEEEEECSSCCEEEEEESSEEEE
T ss_pred             CcceEEEEEEccC-CCCcEEEEEEEeCCC-CcccCcEEEEECCCCCEEeeeeceEEEe
Confidence            4567899988665 689999999999977 6688999999999999999999998654
>d1hehc_ b.2.2.1 (C:) Endo-1,4-beta xylanase D, xylan binding domain, XBD {Cellulomonas fimi [TaxId: 1708]} Back     information, alignment and structure
>d1e5ba_ b.2.2.1 (A:) Endo-1,4-beta xylanase D, xylan binding domain, XBD {Cellulomonas fimi [TaxId: 1708]} Back     information, alignment and structure
>d1exha_ b.2.2.1 (A:) Exo-1,4-beta-D-glycanase (cellulase, xylanase), cellulose-binding domain, CBD {Cellulomonas fimi [TaxId: 1708]} Back     information, alignment and structure