Citrus Sinensis ID: 006369

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------65
MEMSYPSTPRWNIERPFLTGRFHQETKAASRFADSFSNNGAEMAIGCYDAGVQELLVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSIDLPKLEEPSDGFSGSEKFKRLKLRSLSQQI
ccccccccccccccccccccccccHHHcHHcccccccccccccccccccccccHHHHHHHHHHHccccccccEEEcccccccccccccccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEccccccccccccHHHHHccccccccHHHHHHHcccccccccccHHHHHHHHHHccccHHHHHccccccccccccHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHcc
cccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccEEEEcccccccccccccccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHEEEEccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEccccccHcHccccccHHHHHHHccHHHHccHHHHHHHHHHHHHHHHHEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccccccccEEEEcccHHHHHHHHHHcHccccccHccccccccccccEEEEEEEEEccccEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHcHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHcHHHcc
memsypstprwnierpfltgrfhqETKAASRFadsfsnngaemAIGCYDAGVQELLVIDDLLSALVGIEGRYISIKRRVnhvhgndtydstvTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFycqpmlgsMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVyegviddpygefFIAEDKSLLKESLTQDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMrecghsaqvptsenskllsfgsnhhYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRStaaaadpchedltcsVERSSLLKRMATLKGVeiktssdsvdleqpvsitglETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLtfevlepnwhVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISssidlpkleepsdgfsgsekfkRLKLRSLSQQI
memsypstprwnierpFLTGRFHQETKAASRFADSFSNNGAEMAIGCYDAGVQELLVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTaaaadpchedltcsverssLLKRMATLKGveiktssdsvdleqpvSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSIDLPKLeepsdgfsgsekfkrlklrslsqqi
MEMSYPSTPRWNIERPFLTGRFHQETKAASRFADSFSNNGAEMAIGCYDAGVQELLVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSIDLPKLEEPSDGFSGSEKFKRLKLRSLSQQI
***********NIERPFLTGRFH********FADSFSNNGAEMAIGCYDAGVQELLVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMRECGHSAQV******KLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEI*******DLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSI******************************
***SYPSTPRWNIERPFLTG********************************QELLVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKG**************PVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLIS**************************RS*SQ**
********PRWNIERPFLTGRFHQETKAASRFADSFSNNGAEMAIGCYDAGVQELLVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSIDLPKLEEPSDGFSGSEKFKRLKLRSLSQQI
*EMSYPSTPRWNIERPFLTGRFHQET*AAS***********EMAIGCYDAGVQELLVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKG**********D*EQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSIDLP***************************
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MEMSYPSTPRWNIERPFLTGRFHQETKAASRFADSFSNNGAEMAIGCYDAGVQELLVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFxxxxxxxxxxxxxxxxxxxxxFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSLKDGIPSFLANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSIDLPKLEEPSDGFSGSEKFKRLKLRSLSQQI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query648 2.2.26 [Sep-21-2011]
Q921G8 905 Gamma-tubulin complex com yes no 0.905 0.648 0.393 1e-128
Q9BSJ2 902 Gamma-tubulin complex com yes no 0.905 0.650 0.391 1e-127
Q5R5J6 902 Gamma-tubulin complex com yes no 0.905 0.650 0.388 1e-126
Q95ZG3 1335 Spindle pole body compone yes no 0.930 0.451 0.309 2e-99
Q9XYP7852 Gamma-tubulin complex com yes no 0.887 0.674 0.322 3e-93
Q9Y705784 Spindle pole body compone yes no 0.881 0.728 0.311 1e-73
Q96CW5907 Gamma-tubulin complex com no no 0.756 0.540 0.257 2e-45
P58854905 Gamma-tubulin complex com no no 0.756 0.541 0.256 1e-44
O73787906 Gamma-tubulin complex com N/A no 0.748 0.535 0.253 2e-44
Q9XYP8917 Gamma-tubulin complex com no no 0.523 0.369 0.263 5e-30
>sp|Q921G8|GCP2_MOUSE Gamma-tubulin complex component 2 OS=Mus musculus GN=Tubgcp2 PE=2 SV=2 Back     alignment and function desciption
 Score =  459 bits (1181), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 243/618 (39%), Positives = 370/618 (59%), Gaps = 31/618 (5%)

Query: 6   PSTPRWNIERPFLTGRFHQETKAASRFADSFSNNGAEMAIGCYDAGVQELLVIDDLLSAL 65
           P  P W  ERP L G F            S  ++   + IG      QE  V++DLL  L
Sbjct: 175 PVFPAWVYERPTLAGDF---------LIGSGLSSDTVLPIGTLPLASQESAVVEDLLYVL 225

Query: 66  VGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFV 125
           VG++GRYI+ +                TF VD ++DL+++E+  RI P+  S+    +F+
Sbjct: 226 VGVDGRYITAQPLAGR--------QNRTFLVDPNLDLSIRELVNRILPVAASYSTVTRFI 277

Query: 126 ESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQA 185
           E +S F+ G VNHA AA++R L+ +Y  +V QLE   R G LS+Q LWFY QP + ++  
Sbjct: 278 EEKSSFEYGQVNHALAAAMRTLVKEYLILVTQLEQLHRQGLLSLQKLWFYIQPAMRTIDI 337

Query: 186 VSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYE 245
           ++++          G + L+LL  ++    GD+  + L   +T+ AS  Y  ILE+W+Y 
Sbjct: 338 LASLATSVDKGECVGGSTLSLLHDRSFNYTGDSQAQELCLYLTKAASAPYFEILEKWIYR 397

Query: 246 GVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYS-LKDGIPSFLANIAGKILTTGKY 304
           G+I DPY EF + E+  L KE + +DY+ KYW QRY+ L   IPSFL  +AGKIL+TGKY
Sbjct: 398 GIIHDPYSEFMV-EEHELRKEKIQEDYNDKYWDQRYTVLPQQIPSFLQKVAGKILSTGKY 456

Query: 305 LNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLR 364
           LNV+RECGH    P ++  +++       Y+E ++ A+ +AS  LL+ + E  +L+  LR
Sbjct: 457 LNVVRECGHDVTCPVAK--EIIYTLKERAYVEQIEKAFNYASKVLLDFLMEEKELVAHLR 514

Query: 365 SIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLT 424
           SIKRY L+DQGDF VHFMD+  EEL K +++I + +L++LL++ALR + A  DP  +DL 
Sbjct: 515 SIKRYFLMDQGDFFVHFMDLTEEELRKPVEDIILTRLEALLELALRMSTANTDPFKDDLK 574

Query: 425 CSVERSSLLKRMATLKGVEIK-----TSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVI 479
             +    L+ ++  +  +E K     T +D  +L    +++GLE FS  Y V+WPLS++I
Sbjct: 575 IELMPHDLITQLLRVLAIETKQEKAMTHADPTEL----TLSGLEAFSFDYMVKWPLSLII 630

Query: 480 SRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNA-SGTAISRSSLLCRSMLKFI 538
           +RKALT+YQM+FR +F+CKHVERQLC  W  ++ A+     S    + +  L + ML F+
Sbjct: 631 NRKALTRYQMLFRHMFYCKHVERQLCSVWISNKTAKQHALHSAKWFAGAFTLRQRMLNFV 690

Query: 539 NSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVER 598
            ++ +Y+ FEV+EP WH++   L++A +ID+V+ HH  FLD CL++C+L  P+LLK   +
Sbjct: 691 QNIQYYMMFEVMEPTWHILEKNLKSASNIDDVLGHHTSFLDNCLKDCMLTNPELLKVFSK 750

Query: 599 LKSLCLQYAAATQWLISS 616
           L S+C+ +    Q    S
Sbjct: 751 LMSVCVMFTNCMQKFTQS 768
Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome.
Mus musculus (taxid: 10090)
>sp|Q9BSJ2|GCP2_HUMAN Gamma-tubulin complex component 2 OS=Homo sapiens GN=TUBGCP2 PE=1 SV=2 Back     alignment and function description
>sp|Q5R5J6|GCP2_PONAB Gamma-tubulin complex component 2 OS=Pongo abelii GN=TUBGCP2 PE=2 SV=1 Back     alignment and function description
>sp|Q95ZG3|SPC97_DICDI Spindle pole body component 97 OS=Dictyostelium discoideum GN=spc97 PE=2 SV=2 Back     alignment and function description
>sp|Q9XYP7|GCP2_DROME Gamma-tubulin complex component 2 homolog OS=Drosophila melanogaster GN=Grip84 PE=1 SV=2 Back     alignment and function description
>sp|Q9Y705|ALP4_SCHPO Spindle pole body component alp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=alp4 PE=1 SV=1 Back     alignment and function description
>sp|Q96CW5|GCP3_HUMAN Gamma-tubulin complex component 3 OS=Homo sapiens GN=TUBGCP3 PE=1 SV=2 Back     alignment and function description
>sp|P58854|GCP3_MOUSE Gamma-tubulin complex component 3 OS=Mus musculus GN=Tubgcp3 PE=2 SV=2 Back     alignment and function description
>sp|O73787|GCP3_XENLA Gamma-tubulin complex component 3 homolog OS=Xenopus laevis GN=tubgcp3 PE=1 SV=1 Back     alignment and function description
>sp|Q9XYP8|GCP3_DROME Gamma-tubulin complex component 3 homolog OS=Drosophila melanogaster GN=l(1)dd4 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query648
296087642702 unnamed protein product [Vitis vinifera] 0.975 0.900 0.824 0.0
224112407711 tubulin gamma complex-associated protein 0.952 0.867 0.8 0.0
359488832681 PREDICTED: gamma-tubulin complex compone 0.961 0.914 0.828 0.0
449461078707 PREDICTED: spindle pole body component 9 0.967 0.886 0.796 0.0
255578011713 gamma-tubulin complex component, putativ 0.978 0.889 0.753 0.0
30686344679 Spc97 / Spc98 family of spindle pole bod 0.942 0.899 0.763 0.0
18418288678 Spc97 / Spc98 family of spindle pole bod 0.942 0.901 0.765 0.0
297807763678 hypothetical protein ARALYDRAFT_488606 [ 0.942 0.901 0.758 0.0
9755764683 spindle pole body protein-like [Arabidop 0.942 0.894 0.759 0.0
357513163672 Gamma-tubulin complex component [Medicag 0.912 0.879 0.771 0.0
>gi|296087642|emb|CBI34898.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1021 bits (2641), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 530/643 (82%), Positives = 573/643 (89%), Gaps = 11/643 (1%)

Query: 4   SYPSTPRWNIERPFLTGRFHQETKAASRFADSFS----NNGAEMAIGCYDAGVQELLVID 59
           S PSTPRWN+ERPFLTGRFHQETK+    A  FS    N G E AI CY A VQEL+VID
Sbjct: 6   SCPSTPRWNVERPFLTGRFHQETKSRHSEAKGFSMDSLNTGLEKAIACYHASVQELIVID 65

Query: 60  DLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFV 119
           DLLSALVGIEGRYISIKR      G + +D  VTFQ+DASMDLALQE+AKRIFPLCESF+
Sbjct: 66  DLLSALVGIEGRYISIKR----FRGKE-FD--VTFQIDASMDLALQELAKRIFPLCESFL 118

Query: 120 LTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFYCQPM 179
           L  QFVESRSQFK GLVNHAFAA+LRA LLDY+AMVAQLEHQFRLGRLSIQGLWFYCQPM
Sbjct: 119 LINQFVESRSQFKTGLVNHAFAAALRAFLLDYQAMVAQLEHQFRLGRLSIQGLWFYCQPM 178

Query: 180 LGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGIL 239
           +GSM A+S VIHKASANNF GSAVLNLLQSQAKAMAGDN VRSLLEKMTQCAS+AYLGIL
Sbjct: 179 MGSMLALSTVIHKASANNFMGSAVLNLLQSQAKAMAGDNAVRSLLEKMTQCASSAYLGIL 238

Query: 240 ERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSLKDGIPSFLANIAGKIL 299
           ERWVYEGVIDDPYGEFFIAE+KSL KESLTQDYDAKYW QRYSLKDGIPSFLAN AG IL
Sbjct: 239 ERWVYEGVIDDPYGEFFIAENKSLQKESLTQDYDAKYWGQRYSLKDGIPSFLANAAGTIL 298

Query: 300 TTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKERYDL 359
           TTGKYLNVMRECGH+ QVP SE+SK +SFGSNHHYLEC+K AYEF+S ELLNLIKE+YDL
Sbjct: 299 TTGKYLNVMRECGHNVQVPASEDSKFISFGSNHHYLECIKAAYEFSSTELLNLIKEKYDL 358

Query: 360 MGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPC 419
           +GKLRSIK YLLLDQGDFLVHFMDIAR+EL K+LD+I+VEKLQSLLD+ALR+TAAAADPC
Sbjct: 359 LGKLRSIKHYLLLDQGDFLVHFMDIARDELAKRLDDISVEKLQSLLDLALRTTAAAADPC 418

Query: 420 HEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVI 479
           HEDLTC VERSSLLKR+ TLK +EI++ +DS DL++PVSI+GLETFSLSYKVQWPLSIVI
Sbjct: 419 HEDLTCCVERSSLLKRLGTLKALEIRSLADSNDLKEPVSISGLETFSLSYKVQWPLSIVI 478

Query: 480 SRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFIN 539
           SRKALTKYQ++FR LFHCKHV RQLCGAWQ+HQG RA N  GTAI RSSLLCRSMLKFIN
Sbjct: 479 SRKALTKYQLIFRFLFHCKHVNRQLCGAWQLHQGVRAINMRGTAIPRSSLLCRSMLKFIN 538

Query: 540 SLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERL 599
           SLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQ HDFFLDKCLRECLL LP+LLKKVERL
Sbjct: 539 SLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQFHDFFLDKCLRECLLLLPELLKKVERL 598

Query: 600 KSLCLQYAAATQWLISSSIDLPKLEEPSDGFSGSEKFKRLKLR 642
           KSLCLQYA+ATQ LISSS+D+PK E PS G  G EK K+ K R
Sbjct: 599 KSLCLQYASATQRLISSSVDIPKSEVPSKGSLGLEKSKQGKSR 641

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224112407|ref|XP_002316177.1| tubulin gamma complex-associated protein [Populus trichocarpa] gi|222865217|gb|EEF02348.1| tubulin gamma complex-associated protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359488832|ref|XP_002273947.2| PREDICTED: gamma-tubulin complex component 2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449461078|ref|XP_004148270.1| PREDICTED: spindle pole body component 97-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255578011|ref|XP_002529877.1| gamma-tubulin complex component, putative [Ricinus communis] gi|223530653|gb|EEF32527.1| gamma-tubulin complex component, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|30686344|ref|NP_850838.1| Spc97 / Spc98 family of spindle pole body (SBP) component [Arabidopsis thaliana] gi|332005039|gb|AED92422.1| Spc97 / Spc98 family of spindle pole body (SBP) component [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|18418288|ref|NP_568346.1| Spc97 / Spc98 family of spindle pole body (SBP) component [Arabidopsis thaliana] gi|13430652|gb|AAK25948.1|AF360238_1 putative spindle pole body protein [Arabidopsis thaliana] gi|14532826|gb|AAK64095.1| putative spindle pole body protein [Arabidopsis thaliana] gi|332005040|gb|AED92423.1| Spc97 / Spc98 family of spindle pole body (SBP) component [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297807763|ref|XP_002871765.1| hypothetical protein ARALYDRAFT_488606 [Arabidopsis lyrata subsp. lyrata] gi|297317602|gb|EFH48024.1| hypothetical protein ARALYDRAFT_488606 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|9755764|emb|CAC01736.1| spindle pole body protein-like [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357513163|ref|XP_003626870.1| Gamma-tubulin complex component [Medicago truncatula] gi|355520892|gb|AET01346.1| Gamma-tubulin complex component [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query648
TAIR|locus:2178930679 AT5G17410 [Arabidopsis thalian 0.942 0.899 0.771 1.7e-258
UNIPROTKB|F1SCV1 906 TUBGCP2 "Uncharacterized prote 0.858 0.613 0.408 8.9e-128
RGD|1309597 905 Tubgcp2 "tubulin, gamma comple 0.893 0.639 0.396 3e-127
UNIPROTKB|A5D7P5 905 TUBGCP2 "Uncharacterized prote 0.893 0.639 0.394 3e-127
MGI|MGI:1921487 905 Tubgcp2 "tubulin, gamma comple 0.893 0.639 0.392 8e-127
UNIPROTKB|Q5ZKY5895 TUBGCP2 "Uncharacterized prote 0.882 0.639 0.393 1.7e-126
UNIPROTKB|Q9BSJ2 902 TUBGCP2 "Gamma-tubulin complex 0.861 0.618 0.400 1.7e-126
UNIPROTKB|E1BZL5 906 TUBGCP2 "Uncharacterized prote 0.882 0.631 0.392 1.5e-125
UNIPROTKB|E1C2Y1 906 TUBGCP2 "Uncharacterized prote 0.882 0.631 0.392 1.5e-125
ZFIN|ZDB-GENE-031118-150882 tubgcp2 "tubulin, gamma comple 0.859 0.631 0.401 3.1e-123
TAIR|locus:2178930 AT5G17410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2488 (880.9 bits), Expect = 1.7e-258, P = 1.7e-258
 Identities = 487/631 (77%), Positives = 550/631 (87%)

Query:     3 MSYPSTPRWNIERPFLTGRFHQETKAASRFADS--F-----SNNGAEMAIGCYDAGVQEL 55
             +S P+TPRWN +RPFLTGRFHQET+A+S+FADS  F     S++G E AIGCYD  VQEL
Sbjct:     7 ISCPTTPRWNQDRPFLTGRFHQETRASSKFADSKRFTLDSSSSSGVEQAIGCYDTPVQEL 66

Query:    56 LVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLC 115
             +VIDDLLSALVGIEGRYISIKR     HG +  DS + FQVD SMDLALQE+AKRIFPLC
Sbjct:    67 IVIDDLLSALVGIEGRYISIKR----FHGKE--DS-IAFQVDPSMDLALQELAKRIFPLC 119

Query:   116 ESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRLSIQGLWFY 175
             E ++L  QFVES SQFKNGLVNHAFAA+LRALLLDY+AMVAQLEHQFRLGRLSIQGLWFY
Sbjct:   120 EYYLLIDQFVESSSQFKNGLVNHAFAAALRALLLDYQAMVAQLEHQFRLGRLSIQGLWFY 179

Query:   176 CQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAY 235
             CQPM+GSM+A++AVI +AS   F GS VLNLLQSQAKAMAGDN+VRSLLEKMT+CASNAY
Sbjct:   180 CQPMMGSMRALAAVIQQASTKQFVGSGVLNLLQSQAKAMAGDNSVRSLLEKMTECASNAY 239

Query:   236 LGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSLKDGIPSFLANIA 295
             L ILERWVYEG+IDDPYGEFFIAE++SL KESL+QD  AKYW QRYSLKD IP FLANIA
Sbjct:   240 LSILERWVYEGIIDDPYGEFFIAENRSLKKESLSQDSTAKYWSQRYSLKDTIPGFLANIA 299

Query:   296 GKILTTGKYLNVMRECGHSAQVPTSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIKE 355
               ILTTGKYLNVMRECGH+ QVP SE SKL  FGSNHHYLEC+K A+EFAS EL+NLIK+
Sbjct:   300 ATILTTGKYLNVMRECGHNVQVPISERSKLTIFGSNHHYLECIKAAHEFASIELVNLIKD 359

Query:   356 RYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAA 415
             +YDL+G+LRSIK YLLLDQGDFLVHFMDIAREEL K++ EI+VEKLQSLLD+ALR+TAAA
Sbjct:   360 KYDLVGRLRSIKHYLLLDQGDFLVHFMDIAREELNKKVHEISVEKLQSLLDLALRTTAAA 419

Query:   416 ADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWPL 475
             ADP HEDLTC V+R+SLL    T  G+   T S+S+  E P+SITGLETFSLSYKVQWPL
Sbjct:   420 ADPRHEDLTCCVDRASLL----TTLGMHKDTDSNSI--EDPMSITGLETFSLSYKVQWPL 473

Query:   476 SIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSML 535
             SIVIS+KAL+KYQ++FR LFHCKHVERQLCGAWQ+HQG R+ N+ GTAI RSSLLCRSML
Sbjct:   474 SIVISKKALSKYQLIFRFLFHCKHVERQLCGAWQIHQGIRSMNSKGTAILRSSLLCRSML 533

Query:   536 KFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKK 595
             KFI+SLLHYLTFEVLEPNWHVMH+RLQ+ +S+DEVIQHHDFFLDKCLR CLL LPD+LKK
Sbjct:   534 KFISSLLHYLTFEVLEPNWHVMHDRLQSTRSVDEVIQHHDFFLDKCLRGCLLLLPDVLKK 593

Query:   596 VERLKSLCLQYAAATQWLISSSIDLPKLEEP 626
             +E+LKS+CLQYAAATQWLISSSID+     P
Sbjct:   594 MEKLKSVCLQYAAATQWLISSSIDINSQSHP 624
GO:0000226 "microtubule cytoskeleton organization" evidence=IEA
GO:0000922 "spindle pole" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0005815 "microtubule organizing center" evidence=IEA
UNIPROTKB|F1SCV1 TUBGCP2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|1309597 Tubgcp2 "tubulin, gamma complex associated protein 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|A5D7P5 TUBGCP2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1921487 Tubgcp2 "tubulin, gamma complex associated protein 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZKY5 TUBGCP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BSJ2 TUBGCP2 "Gamma-tubulin complex component 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1BZL5 TUBGCP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1C2Y1 TUBGCP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-031118-150 tubgcp2 "tubulin, gamma complex associated protein 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00020711001
SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (691 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00025404001
SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (841 aa)
    ••••0.556

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query648
pfam04130528 pfam04130, Spc97_Spc98, Spc97 / Spc98 family 1e-135
>gnl|CDD|217915 pfam04130, Spc97_Spc98, Spc97 / Spc98 family Back     alignment and domain information 
 Score =  405 bits (1043), Expect = e-135
 Identities = 177/547 (32%), Positives = 271/547 (49%), Gaps = 39/547 (7%)

Query: 60  DLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFV 119
           DLL AL+G+E  Y              +    +   +   +  +L+ +  RI  L   + 
Sbjct: 1   DLLFALLGLESLYFRYD--------KSSESFKIAPNISGLLSPSLRSLLNRILELGTLYR 52

Query: 120 LTGQFVE--SRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFR-LGRLSIQGLWFYC 176
              +F+E  S S    G V  A AA+LR +L +Y  +VAQLE +    G L++  L    
Sbjct: 53  RLREFIESISSSSSLYGPVLQALAAALREILNEYLQLVAQLESELLSNGTLTLLQLLAEL 112

Query: 177 QPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYL 236
           QP +  ++ ++ ++ +  + +  G  +L+ L  +  +  GD  +R LL ++   AS  YL
Sbjct: 113 QPAILLLRLLAEIVEEILSKSLKGGQLLSSLYERIASQTGDPDLRELLLRLLNAASQPYL 172

Query: 237 GILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSL-KDGIPSFL-ANI 294
            +L RW+  G +DDPYGEFFI E++S   E +  D   +YW +RY+L +D +PSFL   +
Sbjct: 173 QMLSRWLLHGELDDPYGEFFIKENES---EEVLSDDSDEYWEERYTLREDMLPSFLPKEL 229

Query: 295 AGKILTTGKYLNVMRECGHSAQVP------------TSENSKLLSFGSNHHYLECVKVAY 342
           A KIL  GK LN +REC  S  +                  KL S          +  AY
Sbjct: 230 ARKILEIGKSLNFLRECCKSHPLAKDQSLALSLREALVSLLKLFSSLDTSALELLIDSAY 289

Query: 343 EFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQ 402
             AS  LL+L+ E YDL+G L+++K Y LL +GDF+  F++   +EL K  + ++   LQ
Sbjct: 290 LEASKSLLDLLLEEYDLLGHLQALKDYFLLGRGDFISSFLESLFDELDKPANSLSDHALQ 349

Query: 403 SLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGL 462
           SLL  ALRS+++  DP   DL     + S          V     S          ++GL
Sbjct: 350 SLLQEALRSSSSDDDPASSDLDELETKKSDSSETLNRLDVSSLELSS--------GLSGL 401

Query: 463 ETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFN---A 519
           +  +L YKV WPLS++++ +AL KYQ +FR L   K  E  L   W+     R       
Sbjct: 402 DALTLDYKVPWPLSLILTPEALKKYQRIFRFLLRLKRAEYLLNKLWKELNKRRRLGSTRR 461

Query: 520 SGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLD 579
           +   + +  LL   ML F+NSL +Y+  +V+E NW  +  +LQ AK +DE+I  H+ +LD
Sbjct: 462 NEPLLRKIWLLRFQMLHFVNSLQYYIQVDVIESNWQKLQEQLQKAKDLDELIAAHEDYLD 521

Query: 580 KCLRECL 586
             L  C 
Sbjct: 522 SILSGCF 528

The spindle pole body (SPB) functions as the microtubule-organising centre in yeast. Members of this family are spindle pole body (SBP) components such as Spc97 and Spc98 that form a complex with gamma-tubulin. This family of proteins includes the grip motif 1 and grip moti 2. Length = 528

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 648
KOG2001734 consensus Gamma-tubulin complex, DGRIP84/SPC97 com 100.0
PF04130542 Spc97_Spc98: Spc97 / Spc98 family; InterPro: IPR00 100.0
KOG2065679 consensus Gamma-tubulin ring complex protein [Cyto 100.0
KOG2000879 consensus Gamma-tubulin complex, DGRIP91/SPC98 com 100.0
KOG43441121 consensus Uncharacterized conserved protein [Funct 99.95
>KOG2001 consensus Gamma-tubulin complex, DGRIP84/SPC97 component [Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=1.1e-113  Score=902.42  Aligned_cols=608  Identities=45%  Similarity=0.745  Sum_probs=545.7

Q ss_pred             CCCCCCCCCcccCCCc-cC-ccccchhhh-----hh-hccc-cccCcccccCCCCCccchHHHHHHHHHHHhcCCCCCce
Q 006369            3 MSYPSTPRWNIERPFL-TG-RFHQETKAA-----SR-FADS-FSNNGAEMAIGCYDAGVQELLVIDDLLSALVGIEGRYI   73 (648)
Q Consensus         3 ~~~p~~p~w~~~~p~~-~~-~~~~~~~~~-----~~-~~~~-~~~~~~~~~~~~~~~~~qE~~lv~dlL~~L~G~~g~~i   73 (648)
                      ++.|..|.|...||++ || .+++.....     +. .... ..+.....+++.+|.+.||..+++|+|+||.|++|+|+
T Consensus        34 i~~~~~s~~~~~rp~~~tG~~~~~s~~~~l~~~~s~r~~~~~~~~~~~~~~is~~~lp~QE~~li~dLl~af~Gv~~ryV  113 (734)
T KOG2001|consen   34 INPKEESELEEKRPALDTGSVQHQSLVSDLVNLLSKRILEGVGIDYFTDYEISDMPLPSQESKLIDDLLYAFVGVEGRYV  113 (734)
T ss_pred             cCccccccccccCcCCCcCccchhhhhhccccchhhhhhhccccccccccCcccCCchhHHHHHHHHHHHHHcCCCccee
Confidence            5667889999999999 77 333332211     11 1111 23556677899999999999999999999999999999


Q ss_pred             eeecccccCCCCCC---CCCcceEEecCCCCHHHHHHHHHHHhHHhHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHH
Q 006369           74 SIKRRVNHVHGNDT---YDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLD  150 (648)
Q Consensus        74 ~~~~~~~~~~~~~~---~~~~~~f~v~~~~~~sl~~l~~~il~l~~~~~~l~~fi~~~~~~~~g~v~~Al~~al~~~L~~  150 (648)
                      +++.    ..+...   ...+..|.|.|+++-++++++++++|+|.+|..+++||++.+.+.+|.|++|+|+|++++|.+
T Consensus       114 ~~Q~----~~~s~~~~~~~~~~~F~v~~~fd~~ir~la~eilpl~~yy~~v~~fie~~s~f~~G~vn~alaaAlr~ll~d  189 (734)
T KOG2001|consen  114 SPQY----MIISEAYEKWIDSIFFMVLPRFDLAIRELAEEILPLASYYLLVQDFIEETSFFEYGQVNHALAAALRELLYD  189 (734)
T ss_pred             ecch----hhhhhhhhhhccCcceeeccchhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHH
Confidence            9865    222111   013578999999999999999999999999999999999999889999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCchhHHHHhhhhhHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006369          151 YEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQC  230 (648)
Q Consensus       151 y~~~v~~lE~~~~~~~lsL~~L~~~~~~~~~~l~~L~~i~~~~~~~~~~G~~lL~~L~~~~~~~~Gd~~~~~ll~~Ll~~  230 (648)
                      |+..|.++|++.+.+.+||++||+|++|++..|+.++..++.+..+.++||.+|+.|++++..+.||+.++.++.++++.
T Consensus       190 yy~li~qlE~e~R~~~lslq~L~~y~qP~m~~m~~l~~~~~~~~~~~~~gg~vls~l~~~~~~~~Gd~~a~~ll~~l~r~  269 (734)
T KOG2001|consen  190 YYELISQLEQELRTNRLSLQDLWFYMQPMMRSMRRLAVAATTTVKKVCKGGAVLSLLQSSIKENLGDRSARMLLKKLLRN  269 (734)
T ss_pred             HHHHHHHHHHHHHhccccHHHHHHHHhhhHHHHHHHHHHHhhhhccccCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998888889999999999999999999999999999999999


Q ss_pred             HhHHHHHHHHHHHhcceecCCCCcceEeeCCccccccccchhhhhhhcccccc-cCCCChhhHHHHHHHHhhhhHHHHHH
Q 006369          231 ASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSL-KDGIPSFLANIAGKILTTGKYLNVMR  309 (648)
Q Consensus       231 ~~~py~~~l~~Wl~~G~l~Dp~~EFfI~~~~~~~~~~l~~~~~~~~W~~~y~i-~~~vP~Fl~~~a~~Il~~GK~l~~Lr  309 (648)
                      +++||++|++.|++.|.++|||+||||.++ ...++.+++|+.++||++||+| +|.+|.|+.+.|+|||.||||+||+|
T Consensus       270 as~~Y~~mLe~Wi~~Gii~Dpy~EFmi~d~-~~~k~~l~ed~~d~YW~~RY~ir~dqiP~fL~~~adkIL~tGKYLNVvR  348 (734)
T KOG2001|consen  270 ASQPYCTMLEEWIYQGIINDPYQEFMIYDN-LITKEDLPEDYTDKYWDQRYTIRKDQIPGFLLSEADKILRTGKYLNVVR  348 (734)
T ss_pred             hcchHHHHHHHHHhcccccCchHhHhhhhc-chhhhcCchhhhHHHHHHhheechhhcchHHHHHHHHHHHhhhHHHHHH
Confidence            999999999999999999999999999999 7778899999999999999999 78999999999999999999999999


Q ss_pred             hhCCCCCCCCcccccccc--cCCcccHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhccCcchHHHHHHHHHH
Q 006369          310 ECGHSAQVPTSENSKLLS--FGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIARE  387 (648)
Q Consensus       310 ~~~~~~~~p~~e~~~~~~--f~~~~~~~~~I~~~~~~as~~ll~ll~~~~~L~~~L~~lk~~fLl~~Gdf~~~f~~~~~~  387 (648)
                      +||+.+++|.+.+. +..  ...+..+.+.|+++|.+||..++++|+++++|.+||+++|+||||++|||+.+|+|.+.+
T Consensus       349 eC~~~v~~p~~~n~-~~~~~~~~e~~~~e~I~~ay~~A~~~lL~ll~~e~dL~~hLrslK~YfLldQgdF~~~Fld~~~e  427 (734)
T KOG2001|consen  349 ECGKIVTIPQSSNE-INDPADLMESNHEEYIKKAYEFANEILLKLLFEEYDLVGHLRSLKHYFLLDQGDFFVTFLDKAEE  427 (734)
T ss_pred             HhCccCCCCcchhh-hccccccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcccchHHHHHHHHHH
Confidence            99999988876431 222  223578999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcccCcccCHHHHHHHHHHHHH-hhhcCCCCCCCccceeeccccHHHHHHhhhccccccCCCCCCCCCC---CCCceee
Q 006369          388 ELMKQLDEITVEKLQSLLDIALR-STAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQP---VSITGLE  463 (648)
Q Consensus       388 ~L~~~~~~~~~~~L~sll~~alr-~s~~~~d~~~~~l~~~l~~~~l~~~l~~~~~l~~~~~~~~~~~~~~---~~~~~~d  463 (648)
                      ||.|+.+.+++.+|+++|+.|+| .|.+..||++++++|++.++++..++..+..++....+ ++...+|   ..++|++
T Consensus       428 EL~K~v~~i~p~kLqsLL~laLr~~s~a~~Dp~k~~L~i~~~~~~L~~ql~~~l~ie~~e~~-ans~~dP~~~l~lsGlE  506 (734)
T KOG2001|consen  428 ELTKNVENISPEKLQSLLDLALREQSEAANDPMKEDLKICVDPTDLITQLSHILAIEPEEES-ANSQADPLEHLDLSGLE  506 (734)
T ss_pred             HHhcchhhcCHHHHHHHHHHHHHhhhcccCCchhhheeeeecHhhHHHHHHHHHhcCccccc-cccccCcchhccccchh
Confidence            99999999999999999999999 78888999999999999999999999887666542221 1112333   5789999


Q ss_pred             EEEeeeecCCcceeeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCcc-hhhHHHHHHHHHHHHHHHHHHH
Q 006369          464 TFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNAS-GTAISRSSLLCRSMLKFINSLL  542 (648)
Q Consensus       464 ~l~L~y~v~wPL~lIlt~~~~~~Y~~IFr~Ll~lk~~~~~L~~~w~~~~~~r~~~~~-~~~~~~~~~Lr~~m~~Fv~~l~  542 (648)
                      +|+|+|+||||||+||++++|.+||+|||++|.||||+++||.+|..++..|..+.. .++.++++.||+||++||+++.
T Consensus       507 ~faf~Y~vkwPLSlIIsrkal~kYQmLfR~lf~lkhVerqL~~~W~~~~~~r~~~~~~~q~~r~s~~LR~RMl~fiqsi~  586 (734)
T KOG2001|consen  507 AFAFDYEVKWPLSLIISRKALIKYQMLFRYLFYLKHVERQLCETWQSHSKARSSNTKGAQIVRASFLLRQRMLNFIQSIE  586 (734)
T ss_pred             hheeeeccCCceeeeEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999987766654 3567888999999999999999


Q ss_pred             HHHhhhcchhhHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhcCCCh-hHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 006369          543 HYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLP-DLLKKVERLKSLCLQYAAATQWLISSSI  618 (648)
Q Consensus       543 ~Y~~~~VIe~~w~~l~~~l~~a~~ld~li~~H~~fL~~i~~~c~L~~~-~l~~~l~~ll~~c~~F~~~~~~~~~~~~  618 (648)
                      +|++.+||||+|+.|++.+++|+++|+|+..|+.||+.|++.|||+.+ .+++.+.++..+|..||+++++++ ++.
T Consensus       587 ~Y~~~eViEp~W~~l~~~l~~a~~vD~Vl~~he~fld~CLk~ClL~~~~~llk~~~kL~~vCl~f~~~~q~~~-~~~  662 (734)
T KOG2001|consen  587 YYMTQEVIEPNWHSLEKCLKNARNVDEVLNEHEGFLDTCLKRCLLTLSPLLLKSFSKLYKVCLMFCSFTQKLT-QSD  662 (734)
T ss_pred             HHHHHHhhcchHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHh-ccc
Confidence            999999999999999999999999999999999999999999999986 899999999999999999999999 444

>PF04130 Spc97_Spc98: Spc97 / Spc98 family; InterPro: IPR007259 Members of this family are spindle pole body (SBP) components such as Spc97, Spc98 and gamma-tubulin Back     alignment and domain information
>KOG2065 consensus Gamma-tubulin ring complex protein [Cytoskeleton] Back     alignment and domain information
>KOG2000 consensus Gamma-tubulin complex, DGRIP91/SPC98 component [Cytoskeleton] Back     alignment and domain information
>KOG4344 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query648
3rip_A677 Crystal Structure Of Human Gamma-Tubulin Complex Pr 3e-19
>pdb|3RIP|A Chain A, Crystal Structure Of Human Gamma-Tubulin Complex Protein 4 (Gcp4) Length = 677 Back     alignment and structure 
Iteration: 1

 Score = 94.0 bits (232), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 117/521 (22%), Positives = 209/521 (40%), Gaps = 63/521 (12%)
Query: 133 NGLVNHAFAASLRALLLDYEAMVAQLEHQFRLG--RLSIQGLWFYCQPMLGSMQAVSAVI 190
           +G+   AF   L ++L  Y   +  LE +F LG   LSI  + ++         +V  V+
Sbjct: 82  HGIYLRAFCTGLDSVLQPYRQALLDLEQEF-LGDPHLSISHVNYFLDQFQLLFPSVMVVV 140
Query: 191 HKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDD 250
            +  +    G  +L  +   +    G   VRS LEK+           L  W+  G++ D
Sbjct: 141 EQIKSQKIHGCQILETVYKHS--CGGLPPVRSALEKILAVCHGVMYKQLSAWMLHGLLLD 198
Query: 251 PYGEFFIAEDKSLLKESLTQDYD----------AKYWRQ------------------RYS 282
            + EFFI +  S    S   + D           K  R+                  ++S
Sbjct: 199 QHEEFFIKQGPSSGNVSAQPEEDEEDLGIGGLTGKQLRELQDLRLIEEENMLAPSLKQFS 258
Query: 283 LK-DGIPSFL-ANIAGKILTTGKYLNVMRECGHSAQVPTSENSKLL-----SFGSNHHYL 335
           L+ + +PS++   +A KIL  G+ + +      +  V  +    +L     +F +  H L
Sbjct: 259 LRVEILPSYIPVRVAEKILFVGESVQMFE----NQNVNLTRKGSILKNQEDTFAAELHRL 314
Query: 336 ------------ECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMD 383
                       + V       +  L  L+ E  DL+G+L+ IK + LL +G+    F+D
Sbjct: 315 KQQPLFSLVDFEQVVDRIRSTVAEHLWKLMVEESDLLGQLKIIKDFYLLGRGELFQAFID 374
Query: 384 IAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVE 443
            A+  L      +T   +      +        D     L  ++E      + AT     
Sbjct: 375 TAQHMLKTPPTAVTEHDVNVAFQQSAHKVLLDDDNLLPLLHLTIEYHGKEHKDAT--QAR 432
Query: 444 IKTSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQ 503
              S ++   E P S  G     LSYKVQWPL I+ +   L KY +VF+ L   + V+ +
Sbjct: 433 EGPSRETSPREAPAS--GWAALGLSYKVQWPLHILFTPAVLEKYNVVFKYLLSVRRVQAE 490
Query: 504 LCGAWQVHQGARAFNASGTAISRSSLLCRSMLKF-INSLLHYLTFEVLEPNWHVMHNRLQ 562
           L   W +    +   ++ T   +  L  R+ + F +++L +YL  +VLE  +  + +++ 
Sbjct: 491 LQHCWALQMQRKHLKSNQTDAIKWRL--RNHMAFLVDNLQYYLQVDVLESQFSQLLHQIN 548
Query: 563 TAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLC 603
           + +  + +   HD FL   L +  + L  +   +  +  LC
Sbjct: 549 STRDFESIRLAHDHFLSNLLAQSFILLKPVFHCLNEILDLC 589

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query648
3rip_A677 Gamma-tubulin complex component 4; helix bundles, 1e-102
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
>3rip_A Gamma-tubulin complex component 4; helix bundles, gamma-tubulin ring complex, gamma-TURC, struc protein; 2.30A {Homo sapiens} Length = 677 Back     alignment and structure
 Score =  324 bits (831), Expect = e-102
 Identities = 125/655 (19%), Positives = 230/655 (35%), Gaps = 84/655 (12%)

Query: 57  VIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVD---ASMDLALQEMAKRIFP 113
           +I +LL AL G  G                T++     QV      +  +   +  R+  
Sbjct: 1   MIHELLLALSGYPGSIF-------------TWNKRSGLQVSQDFPFLHPSETSVLNRLCR 47

Query: 114 LCESFVLTGQFVESRSQF---------------KNGLVNHAFAASLRALLLDYEAMVAQL 158
           L   ++   +F+E  +                  +G+   AF   L ++L  Y   +  L
Sbjct: 48  LGTDYIRFTEFIEQYTGHVQQQDHHPSQQGQGGLHGIYLRAFCTGLDSVLQPYRQALLDL 107

Query: 159 EHQFRL-GRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGD 217
           E +F     LSI  + ++         +V  V+ +  +    G  +L  +   +    G 
Sbjct: 108 EQEFLGDPHLSISHVNYFLDQFQLLFPSVMVVVEQIKSQKIHGCQILETVYKHS--CGGL 165

Query: 218 NTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAK-- 275
             VRS LEK+           L  W+  G++ D + EFFI +  S    S   + D +  
Sbjct: 166 PPVRSALEKILAVCHGVMYKQLSAWMLHGLLLDQHEEFFIKQGPSSGNVSAQPEEDEEDL 225

Query: 276 --------------------------YWRQRYSL-KDGIPSFL-ANIAGKILTTGKYLNV 307
                                        +++SL  + +PS++   +A KIL  G+ + +
Sbjct: 226 GIGGLTGKQLRELQDLRLIEEENMLAPSLKQFSLRVEILPSYIPVRVAEKILFVGESVQM 285

Query: 308 MRECGHSAQVP-------------TSENSKLLSFGSNHHYLECVKVAYEFASGELLNLIK 354
                 +                      K     S   + + V       +  L  L+ 
Sbjct: 286 FENQNVNLTRKGSILKNQEDTFAAELHRLKQQPLFSLVDFEQVVDRIRSTVAEHLWKLMV 345

Query: 355 ERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAA 414
           E  DL+G+L+ IK + LL +G+    F+D A+  L      +T   +      +      
Sbjct: 346 EESDLLGQLKIIKDFYLLGRGELFQAFIDTAQHMLKTPPTAVTEHDVNVAFQQSAHKVLL 405

Query: 415 AADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWP 474
             D     L  ++E      + AT    + +         +    +G     LSYKVQWP
Sbjct: 406 DDDNLLPLLHLTIEYHGKEHKDAT----QAREGPSRETSPREAPASGWAALGLSYKVQWP 461

Query: 475 LSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSM 534
           L I+ +   L KY +VF+ L   + V+ +L   W +    +    S    +    L   M
Sbjct: 462 LHILFTPAVLEKYNVVFKYLLSVRRVQAELQHCWALQMQRKHLK-SNQTDAIKWRLRNHM 520

Query: 535 LKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLK 594
              +++L +YL  +VLE  +  + +++ + +  + +   HD FL   L +  + L  +  
Sbjct: 521 AFLVDNLQYYLQVDVLESQFSQLLHQINSTRDFESIRLAHDHFLSNLLAQSFILLKPVFH 580

Query: 595 KVERLKSLCLQYAAATQWLIS--SSIDLPKLEEPSDGFSGSEKFKRLKLRSLSQQ 647
            +  +  LC  + +     +         +L     GFS         L S+   
Sbjct: 581 CLNEILDLCHSFCSLVSQNLGPLDERGAAQLSILVKGFSRQSSLLFKILSSVRNH 635
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query648
3rip_A677 Gamma-tubulin complex component 4; helix bundles, 100.0
>3rip_A Gamma-tubulin complex component 4; helix bundles, gamma-tubulin ring complex, gamma-TURC, struc protein; 2.30A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=1.4e-86  Score=761.65  Aligned_cols=537  Identities=22%  Similarity=0.364  Sum_probs=443.9

Q ss_pred             HHHHHHHHhcCCCCCceeeecccccCCCCCCCCCcceEEecC---CCCHHHHHHHHHHHhHHhHHHHHHHHhhhccCC--
Q 006369           57 VIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDA---SMDLALQEMAKRIFPLCESFVLTGQFVESRSQF--  131 (648)
Q Consensus        57 lv~dlL~~L~G~~g~~i~~~~~~~~~~~~~~~~~~~~f~v~~---~~~~sl~~l~~~il~l~~~~~~l~~fi~~~~~~--  131 (648)
                      ||+|||+||+|++|.||++.+             ..+|+|++   .+++|+++++++++++|.+|++|++|++.....  
T Consensus         1 Ml~dlL~~L~G~~g~~i~~~~-------------~~~f~v~~~~~~l~~s~r~ll~~l~~lg~~y~~l~~fv~~~~~~~~   67 (677)
T 3rip_A            1 MIHELLLALSGYPGSIFTWNK-------------RSGLQVSQDFPFLHPSETSVLNRLCRLGTDYIRFTEFIEQYTGHVQ   67 (677)
T ss_dssp             CHHHHHHHHTTCCCSSSEEET-------------TTEEECCSCCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC--
T ss_pred             ChHHHHHHHcCCCCCceEecC-------------CCceeeCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence            689999999999999999876             14799998   567999999999999999999999999974321  


Q ss_pred             -------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCchhHHHHhhhhhHHHHHHHHHHHHHhhcCC
Q 006369          132 -------------KNGLVNHAFAASLRALLLDYEAMVAQLEHQFRL-GRLSIQGLWFYCQPMLGSMQAVSAVIHKASANN  197 (648)
Q Consensus       132 -------------~~g~v~~Al~~al~~~L~~y~~~v~~lE~~~~~-~~lsL~~L~~~~~~~~~~l~~L~~i~~~~~~~~  197 (648)
                                   .+|+|.+|||++|+++|++|+..|+++|+++.. +.+||+.++.+++|+...|+.|++|+.++..+.
T Consensus        68 ~~~~~~~~~~~~~~~g~v~~Al~~~i~~~L~~Y~~~i~~lE~~~l~~~~~sL~~l~~~l~~~~~~l~~L~~l~~~~~~~~  147 (677)
T 3rip_A           68 QQDHHPSQQGQGGLHGIYLRAFCTGLDSVLQPYRQALLDLEQEFLGDPHLSISHVNYFLDQFQLLFPSVMVVVEQIKSQK  147 (677)
T ss_dssp             -----------CCSCSHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CcccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence                         169999999999999999999999999999854 679999999999999999999999999887667


Q ss_pred             CchhhHHHHHHHHHHHhcCChHHHHHHHHHHHHHhHHHHHHHHHHHhcceecCCCCcceEeeCCcccccccc--------
Q 006369          198 FTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLT--------  269 (648)
Q Consensus       198 ~~G~~lL~~L~~~~~~~~Gd~~~~~ll~~Ll~~~~~py~~~l~~Wl~~G~l~Dp~~EFfI~~~~~~~~~~l~--------  269 (648)
                      ++||++|+.||+.+  .+||+.+++++.+|+.+|++||++||..||++|+|.|||+||||.+++...+..+.        
T Consensus       148 ~~G~~lL~~L~~~~--~~Gd~~~~~~~~~Ll~~~~~~~~~~L~~Wl~~G~L~Dp~~EFFI~~~~~~~~~~~~~~~~~~~~  225 (677)
T 3rip_A          148 IHGCQILETVYKHS--CGGLPPVRSALEKILAVCHGVMYKQLSAWMLHGLLLDQHEEFFIKQGPSSGNVSAQPEEDEEDL  225 (677)
T ss_dssp             CCTHHHHHHHHHHH--HSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSCSSEEEC-----------------
T ss_pred             CCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCeeCCCcchheeEecccccccccccccccccc
Confidence            99999999999987  49999999999999999999999999999999999999999999988654321100        


Q ss_pred             -------------------ch-hhhhhhcccccc-cCCCChhhHH-HHHHHHhhhhHHHHHHhhCCCCCC-----CCccc
Q 006369          270 -------------------QD-YDAKYWRQRYSL-KDGIPSFLAN-IAGKILTTGKYLNVMRECGHSAQV-----PTSEN  322 (648)
Q Consensus       270 -------------------~~-~~~~~W~~~y~i-~~~vP~Fl~~-~a~~Il~~GK~l~~Lr~~~~~~~~-----p~~e~  322 (648)
                                         .+ ....+|..+|+| .+++|.|+++ +|+|||.|||++|+||+|+.....     +..+.
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~e~~~~~~w~~~y~l~~~~lP~Fl~~~~A~kIl~~GKsln~lr~~~~~~~~~~~~~~~~~~  305 (677)
T 3rip_A          226 GIGGLTGKQLRELQDLRLIEEENMLAPSLKQFSLRVEILPSYIPVRVAEKILFVGESVQMFENQNVNLTRKGSILKNQED  305 (677)
T ss_dssp             ---------------------------CCCCEEECGGGSCTTSCHHHHHHHHHHHHHHHTCCC-CCSCC---CTTCSHHH
T ss_pred             ccccccccccchhhhhhcccccccccchhcceeecHhhCcCccCHHHHHHHHHhhHHHHHHHccCCCCCcccccccchHH
Confidence                               00 012479999999 6789999986 999999999999999998754210     00000


Q ss_pred             ------ccccccC--CcccHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhccCcchHHHHHHHHHHHHcccCc
Q 006369          323 ------SKLLSFG--SNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLD  394 (648)
Q Consensus       323 ------~~~~~f~--~~~~~~~~I~~~~~~as~~ll~ll~~~~~L~~~L~~lk~~fLl~~Gdf~~~f~~~~~~~L~~~~~  394 (648)
                            ..+.+..  +...+...|+++|..||+.|+++++++++|.+||+++|+||||++|||+.+|++.++++|.+|..
T Consensus       306 ~~~~~l~~L~~~~~~~~~~~e~~I~~~~~~as~~Ll~lL~~~~~L~~hL~~Lk~yfLL~~Gdf~~~f~~~~~~~L~~~~~  385 (677)
T 3rip_A          306 TFAAELHRLKQQPLFSLVDFEQVVDRIRSTVAEHLWKLMVEESDLLGQLKIIKDFYLLGRGELFQAFIDTAQHMLKTPPT  385 (677)
T ss_dssp             HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCCC
T ss_pred             HHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCc
Confidence                  0011110  12467889999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHHHHHhhhcCCCCCCCccceeeccccHHHHHHhhhccccccCCCCCCCCCCCCCceeeEEEeeeecCCc
Q 006369          395 EITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWP  474 (648)
Q Consensus       395 ~~~~~~L~sll~~alr~s~~~~d~~~~~l~~~l~~~~l~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~d~l~L~y~v~wP  474 (648)
                      +++..+|+..|+.|++.+....+++.+.+.+.+........ ....+.+  .. .........+..|||.|+|+|+||||
T Consensus       386 ~~~~~~L~~~L~~a~~~~~~~~~~~~~~L~~~i~~~~~~~~-~~~~~~~--~~-~~~~~~~~~~~~~~d~l~L~Y~v~~P  461 (677)
T 3rip_A          386 AVTEHDVNVAFQQSAHKVLLDDDNLLPLLHLTIEYHGKEHK-DATQARE--GP-SRETSPREAPASGWAALGLSYKVQWP  461 (677)
T ss_dssp             TTHHHHHHHHHHHHHHHTTCCCTTTGGGEEEEECCCC---------------------------CCTTTTEEEEECCCTT
T ss_pred             ccCHHHHHHHHHHHHHHccCCchhhHhcceEEeeccccccc-ccccccc--cc-ccccccccCCccchheEEEEEeCCCh
Confidence            99999999999999998766666676777776654332100 0000000  00 00011223457899999999999999


Q ss_pred             ceeeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhH
Q 006369          475 LSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNW  554 (648)
Q Consensus       475 L~lIlt~~~~~~Y~~IFr~Ll~lk~~~~~L~~~w~~~~~~r~~~~~~~~~~~~~~Lr~~m~~Fv~~l~~Y~~~~VIe~~w  554 (648)
                      |++|||+++|.+|+.||+|||++||+++.|+++|..++..|........+++ +.+|++|+|||+++++|++++||+++|
T Consensus       462 L~liit~~~l~~Y~~iF~~Ll~lkr~~~~L~~~w~~~~~~~~~~~~~~~~~~-~~lr~~m~~Fv~~l~~Y~~~~Vie~~w  540 (677)
T 3rip_A          462 LHILFTPAVLEKYNVVFKYLLSVRRVQAELQHCWALQMQRKHLKSNQTDAIK-WRLRNHMAFLVDNLQYYLQVDVLESQF  540 (677)
T ss_dssp             GGGTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSGGGCCSSHHHHHH-HHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988765543322233444 899999999999999999999999999


Q ss_pred             HHHHHHhccCCCHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 006369          555 HVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWL  613 (648)
Q Consensus       555 ~~l~~~l~~a~~ld~li~~H~~fL~~i~~~c~L~~~~l~~~l~~ll~~c~~F~~~~~~~  613 (648)
                      .+|++++++++|+|+++++|++||++|+++|||+.+++.+++.+|+++|.+||.++++.
T Consensus       541 ~~~~~~l~~~~~~d~l~~~H~~~L~~i~~~c~L~~~~v~~~l~~il~~~~~F~~~~~~~  599 (677)
T 3rip_A          541 SQLLHQINSTRDFESIRLAHDHFLSNLLAQSFILLKPVFHCLNEILDLCHSFCSLVSQN  599 (677)
T ss_dssp             HHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhcccCCCHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999863

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00