Citrus Sinensis ID: 006374

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------65
MRTQTFRPFRRGTNLDSGFLQRGQRLASNGYNIMSTSLDNHINRIVDPRGPFWNWIWLAVRIISTSLDPLFFYIFVVNDHKKCVDLDIKLAIIAISLRTIFDFFNIIYSSSTPHKHSRANAKKCFYLNSFLKDLLSCLPIPQLVTSIIIITSKGSGFFPAMVWLKVVVIVQYVPRFYRIYRLYAVAESTSGILAQMKWVKSACCILIYLLAAHVFGALWYFMAIERETECWKKACREHTECYQNSFHCYETVGNYTFLTGLCPTMIQDTTMFNFGMFQEAIQSGMVEEKAFKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKLEEIKSKAREIEQWRTFEMLSQSLQQRVRNHQQYVWQEMRGIDVENLLNNLPVNLNWEMKSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRKLEGSLYAKENILQDQKAEAGGKPSKFGTAIYATQFFTYVRRSVKRNGGLPGGRVNITLAASETTRS
ccccccccccccccccccccccccccccccccccccccccccccEEcccccHHHHHHHHHHHHHHHcccccEEEEEEcccccEEEccccHHHHHHHHHHHHHHHHHHHcccccEEcccHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccHHHHHHHccHHHHHHHHHHHcHHHHHccccHHcccHHHHHHHHHHccccccccccEEEEccccccEEEEEEEcEEEEEEEcccEEEEEEEEEEccccEEcccccccccccccccccccccccEEEccEEcccccccccHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHccccccHHHHccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcccccccccccEEcccccccc
ccccccccHHHcccccccccccccccccccccEccccccccccccccccccHHHHHHHHHHHHHHHHcccEEEEEEccccccEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEHEHccccHEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHEEEcccccccccEHccccccccccccccccEEEHcHccccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccHHHHHHHccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEcccccEEEEEEEEEEEEEEcccccccEEEEEEcccccccHHHHHHHHcccccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccHHHHHHHEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccc
mrtqtfrpfrrgtnldsgflQRGQrlasngynimstsldnhinrivdprgpfwNWIWLAVRIISTSLDPLFFYIFVVNDHKKCVDLDIKLAIIAISLRTIFDFFNiiyssstphkhsranakkCFYLNSFLKDLlsclpipqlvTSIIIITskgsgffpAMVWLKVVVIVQYVPRFYRIYRLYAVAESTSGILAQMKWVKSACCILIYLLAAHVFGALWYFMAIERETECWKKACREHTecyqnsfhcyetvgnytfltglcptmiqdttmFNFGMFQEAIQSGMVEEKAFKKKFIYCFRWGLqtvscagqnlqtsthEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKLEEIKSKAREIEQWRTFEMLSQSLQQRVRNHQQYVWQEMRGIDVENLlnnlpvnlnwEMKSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECcivkegdpicEMFFITQGTllttttnggrntSVFKKYLStgdfwgeelatsaldpdplsniphsncalisVTNVEAFAINTDDLRAIVYQYWQhrnhnmqpldIFKFYSQEWRTSKACVIQAAWCRYKKRKLEGSLYAKENILqdqkaeaggkpskfgtaIYATQFFTYVRRSVkrngglpggrvnITLAASETTRS
mrtqtfrpfrrgtnldsgflqRGQRLASNGYNIMSTSLDNHINRIVDPRGPFWNWIWLAVRIISTSLDPLFFYIFVVNDHKKCVDLDIKLAIIAISLRTIFDFFNIIYSsstphkhsraNAKKCFYLNSFLKDLLSCLPIPQLVTSIIIITSKGSGFFPAMVWLKVVVIVQYVPRFYRIYRLYAVAESTSGILAQMKWVKSACCILIYLLAAHVFGALWYFMAIERETECWKKACREHTECYQNSFHCYETVGNYTFLTGLCPTMIQDTTMFNFGMFQEAIQSGMVEEKAFKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKLEEIKSKAREIEQWRTFEMLSQSLQQRVRNHQQYVWQEMRGIDVENLLNNLPVNLNWEMKSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLlttttnggrntSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRKLEGSLYAKENILQDqkaeaggkpskfGTAIYATQFFTYVRRSvkrngglpggrvnitlaasettrs
MRTQTFRPFRRGTNLDSGFLQRGQRLASNGYNIMSTSLDNHINRIVDPRGPFWNWIWLAVRIISTSLDPLFFYIFVVNDHKKCVDLDIKLAIIAISLRTIFDFFNIIYSSSTPHKHSRANAKKCFYLNSFLKDLLSCLPIPQLVtsiiiitsKGSGFFPAMVWLKVVVIVQYVPRFYRIYRLYAVAESTSGILAQMKWVKSACCILIYLLAAHVFGALWYFMAIERETECWKKACREHTECYQNSFHCYETVGNYTFLTGLCPTMIQDTTMFNFGMFQEAIQSGMVEEKAFKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENllasfiiiasllllllvlgnltiylQSGTIKLEEIKSKAREIEQWRTFEMLSQSLQQRVRNHQQYVWQEMRGIDVEnllnnlpvnlnWEMKSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFItqgtllttttnggrntSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRKLEGSLYAKENILQDQKAEAGGKPSKFGTAIYATQFFTYVRRSVKRNGGLPGGRVNITLAASETTRS
*******************L***QRLASNGYNIMSTSLDNHINRIVDPRGPFWNWIWLAVRIISTSLDPLFFYIFVVNDHKKCVDLDIKLAIIAISLRTIFDFFNIIYSSS******RANAKKCFYLNSFLKDLLSCLPIPQLVTSIIIITSKGSGFFPAMVWLKVVVIVQYVPRFYRIYRLYAVAESTSGILAQMKWVKSACCILIYLLAAHVFGALWYFMAIERETECWKKACREHTECYQNSFHCYETVGNYTFLTGLCPTMIQDTTMFNFGMFQEAIQSGMVEEKAFKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKLEEIKSKAREIEQWRTFEMLSQSLQQRVRNHQQYVWQEMRGIDVENLLNNLPVNLNWEMKSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRKLEGSLYAKENIL************KFGTAIYATQFFTYVRRSVKRNGGLPGGRVNI**********
****************************************HINRIVDPRGPFWNWIWLAVRIISTSLDPLFFYIFVVNDHKKCVDLDIKLAIIAISLRTIFDFFNIIYSSSTPHKHSRANAKKCFYLNSFLKDLLSCLPIPQLVTSIIIITSKGSGFFPAMVWLKVVVIVQYVPRFYRIYRLYAVAESTSGILAQMKWVKSACCILIYLLAAHVFGALWYFMAIERETECWKKACREHTECYQNSFHCYETVGNYTFLTGLCPTMIQDTTMFNFGMFQEAIQSGMVEEKAFKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKLEEIKSKAREIEQWRTFEMLSQSLQQRVRNHQQYVWQEMRGIDVENLLNNLPVNLNWEMKSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALD***********CALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSK*********************************************************************************
********FRRGTNLDSGFLQRGQRLASNGYNIMSTSLDNHINRIVDPRGPFWNWIWLAVRIISTSLDPLFFYIFVVNDHKKCVDLDIKLAIIAISLRTIFDFFNIIYSSS********NAKKCFYLNSFLKDLLSCLPIPQLVTSIIIITSKGSGFFPAMVWLKVVVIVQYVPRFYRIYRLYAVAESTSGILAQMKWVKSACCILIYLLAAHVFGALWYFMAIERETECWKKACREHTECYQNSFHCYETVGNYTFLTGLCPTMIQDTTMFNFGMFQEAIQSGMVEEKAFKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKLEEIKSKAREIEQWRTFEMLSQSLQQRVRNHQQYVWQEMRGIDVENLLNNLPVNLNWEMKSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRKLEGSLYAKENILQDQKAEAGGKPSKFGTAIYATQFFTYVRRSVKRNGGLPGGRVNITLAASETTRS
*******************************NIMSTSLDNHINRIVDPRGPFWNWIWLAVRIISTSLDPLFFYIFVVNDHKKCVDLDIKLAIIAISLRTIFDFFNIIYSSSTPHKHSRANAKKCFYLNSFLKDLLSCLPIPQLVTSIIIITSKGSGFFPAMVWLKVVVIVQYVPRFYRIYRLYAVAESTSGILAQMKWVKSACCILIYLLAAHVFGALWYFMAIERETECWKKACREHTECYQNSFHCYETVGNYTFLTGLCPTMIQDTTMFNFGMFQEAIQSGMVEEKAFKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKLEEIKSKAREIEQWRTFEMLSQSLQQRVRNHQQYVWQEMRGIDVENLLNNLPVNLNWEMKSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRKLEGSLYAKENILQD*******KPSKFGTAIYATQFFTYVRRSVKRN************A*******
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRoooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MRTQTFRPFRRGTNLDSGFLQRGQRLASNGYNIMSTSLDNHINRIVDPRGPFWNWIWLAVRIISTSLDPLFFYIFVVNDHKKCVDLDIKLAIIAISLRTIFDFFNIIYSSSTPHKHSRANAKKCFYLNSFLKDLLSCLPIPQLVTSIIIITSKGSGFFPAMVWLKVVVIVQYVPRFYRIYRLYAVAESTSGILAQMKWVKSACCILIYLLAAHVFGALWYFMAIERETECWKKACREHTECYQNSFHCYETVGNYTFLTGLCPTMIQDTTMFNFGMFQEAIQSGMVEEKAFKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKLEEIKSKAREIEQWRTFEMLSQSLQQRVRNHQQYVWQEMRGIDVENLLNNLPVNLNWEMKSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRKLEGSLYAKENILQDQKAEAGGKPSKFGTAIYATQFFTYVRRSVKRNGGLPGGRVNITLAASETTRS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query648 2.2.26 [Sep-21-2011]
O65717716 Cyclic nucleotide-gated i yes no 0.910 0.824 0.453 1e-146
Q9SKD7706 Probable cyclic nucleotid no no 0.910 0.835 0.406 1e-128
Q9LNJ0711 Probable cyclic nucleotid no no 0.902 0.822 0.405 1e-128
Q9LD40696 Putative cyclic nucleotid no no 0.941 0.876 0.395 1e-127
O82226747 Probable cyclic nucleotid no no 0.953 0.827 0.378 1e-126
Q9M0A4733 Putative cyclic nucleotid no no 0.938 0.829 0.376 1e-125
Q8RWS9717 Probable cyclic nucleotid no no 0.956 0.864 0.364 1e-117
Q9FXH6753 Putative cyclic nucleotid no no 0.888 0.764 0.370 1e-114
Q9S9N5738 Putative cyclic nucleotid no no 0.827 0.726 0.389 1e-114
Q9SL29678 Putative cyclic nucleotid no no 0.854 0.817 0.355 1e-102
>sp|O65717|CNGC1_ARATH Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1 Back     alignment and function desciption
 Score =  520 bits (1339), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 280/618 (45%), Positives = 390/618 (63%), Gaps = 28/618 (4%)

Query: 43  NRIVDPRGPF---WNWIWLAVRIISTSLDPLFFYIFVVNDHKKCVDLDIKLAIIAISLRT 99
           ++I+DP+GPF   WN I++   II+ SLDPLFFY+ +++D KKC+ +D K+ I A  LR+
Sbjct: 82  HKILDPQGPFLQRWNKIFVLACIIAVSLDPLFFYVPIIDDAKKCLGIDKKMEITASVLRS 141

Query: 100 IFDFFNI-----------------IYSSSTPHKHSRANAKKCFYLNS-FLKDLLSCLPIP 141
             D F +                 ++      +  R  AK+  YL+S F+ D+L+ LP+P
Sbjct: 142 FTDVFYVLHIIFQFRTGFIAPSSRVFGRGVLVEDKREIAKR--YLSSHFIIDILAVLPLP 199

Query: 142 QLVTSIIIITSKGSGFFPAMVWLKVVVIVQYVPRFYRIYRLYAVAESTSGILAQMKWVKS 201
           Q+V  III   +GS        LK +V  QY+PRF RIY LY     TSGIL +  W  +
Sbjct: 200 QMVILIIIPHMRGSSSLNTKNMLKFIVFFQYIPRFIRIYPLYKEVTRTSGILTETAWAGA 259

Query: 202 ACCILIYLLAAHVFGALWYFMAIERETECWKKAC-REHTECYQNSFHC-YETVGNYTFLT 259
           A  + +Y+LA+HVFGA WY  +IERET CWK+AC R +  C     +C  ET G   FL 
Sbjct: 260 AFNLFLYMLASHVFGAFWYLFSIERETVCWKQACERNNPPCISKLLYCDPETAGGNAFLN 319

Query: 260 GLCPTMIQDTTMFNFGMFQEAIQSGMVEEKAFKKKFIYCFRWGLQTVSCAGQNLQTSTHE 319
             CP    +TT+F+FG+F +A+QSG+VE + F +KF YCF WGLQ +S  GQNL+TST+ 
Sbjct: 320 ESCPIQTPNTTLFDFGIFLDALQSGVVESQDFPQKFFYCFWWGLQNLSSLGQNLKTSTYI 379

Query: 320 GENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKLEEIKSKAREIEQWRTFEMLSQSLQQ 379
            E   A FI IA L+L   ++GN+  YLQS T +LEE++ K R+ EQW +  +L ++L++
Sbjct: 380 WEICFAVFISIAGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPENLRK 439

Query: 380 RVRNHQQYVWQEMRGIDVENLLNNLPVNLNWEMKSELCLEVLKKVPMFQMMGKSILSEMC 439
           R+R ++QY WQE RG+D ENLL+NLP +L  ++K  LCL +L +VPMF+ M + +L  +C
Sbjct: 440 RIRRYEQYKWQETRGVDEENLLSNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDALC 499

Query: 440 KCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEEL 499
             L+PVLY +E  IV+EGDP+ EM FI +G LLT TTNGGR   +  +YL  GDF GEEL
Sbjct: 500 DRLQPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFLNSEYLGAGDFCGEEL 559

Query: 500 ATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFY 559
            T ALDP   SN+P S   + ++  VEAFA+  DDL+ +  Q+   R H+ Q    F++Y
Sbjct: 560 LTWALDPHSSSNLPISTRTVRALMEVEAFALKADDLKFVASQF--RRLHSKQLRHTFRYY 617

Query: 560 SQEWRTSKACVIQAAWCRYKKRKLEGSLYAKENILQDQKA-EAGGKPSKFGTAIYATQFF 618
           SQ+W+T  AC IQAAW RY K+KLE SL  +EN LQD  A EA G     G  IYA++F 
Sbjct: 618 SQQWKTWAACFIQAAWRRYIKKKLEESLKEEENRLQDALAKEACGSSPSLGATIYASRFA 677

Query: 619 TYVRRSVKRNGGLPGGRV 636
             + R+++R+G +   R+
Sbjct: 678 ANILRTIRRSGSVRKPRM 695
Acts as cyclic nucleotide-gated ion channel. Can be activated by cyclic AMP which leads to an opening of the cation channel. May be responsible for cAMP-induced calcium entry in cells and thus should be involved in the calcium signal transduction. Could transport K(+), Na(+) and Pb(2+).
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SKD7|CNGC3_ARATH Probable cyclic nucleotide-gated ion channel 3 OS=Arabidopsis thaliana GN=CNGC3 PE=2 SV=2 Back     alignment and function description
>sp|Q9LNJ0|CNG10_ARATH Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC10 PE=2 SV=2 Back     alignment and function description
>sp|Q9LD40|CNG13_ARATH Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana GN=CNGC13 PE=3 SV=2 Back     alignment and function description
>sp|O82226|CNGC6_ARATH Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 PE=1 SV=2 Back     alignment and function description
>sp|Q9M0A4|CNGC9_ARATH Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9 PE=1 SV=1 Back     alignment and function description
>sp|Q8RWS9|CNGC5_ARATH Probable cyclic nucleotide-gated ion channel 5 OS=Arabidopsis thaliana GN=CNGC5 PE=2 SV=1 Back     alignment and function description
>sp|Q9FXH6|CNGC8_ARATH Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 PE=3 SV=2 Back     alignment and function description
>sp|Q9S9N5|CNGC7_ARATH Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana GN=CNGC7 PE=2 SV=1 Back     alignment and function description
>sp|Q9SL29|CNG15_ARATH Putative cyclic nucleotide-gated ion channel 15 OS=Arabidopsis thaliana GN=CNGC15 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query648
255545024 838 Cyclic nucleotide-gated ion channel, put 0.955 0.738 0.459 1e-154
356509281715 PREDICTED: cyclic nucleotide-gated ion c 0.955 0.865 0.444 1e-153
356516029715 PREDICTED: cyclic nucleotide-gated ion c 0.955 0.865 0.445 1e-153
224135235708 predicted protein [Populus trichocarpa] 0.933 0.854 0.444 1e-149
225462733709 PREDICTED: cyclic nucleotide-gated ion c 0.947 0.866 0.44 1e-147
224118210709 predicted protein [Populus trichocarpa] 0.933 0.853 0.443 1e-147
356551532718 PREDICTED: cyclic nucleotide-gated ion c 0.924 0.834 0.442 1e-147
15238657716 cyclic nucleotide-gated ion channel 1 [A 0.910 0.824 0.453 1e-145
297796139716 hypothetical protein ARALYDRAFT_918383 [ 0.913 0.826 0.452 1e-143
449456377713 PREDICTED: cyclic nucleotide-gated ion c 0.925 0.841 0.434 1e-142
>gi|255545024|ref|XP_002513573.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis] gi|223547481|gb|EEF48976.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  553 bits (1424), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 295/642 (45%), Positives = 397/642 (61%), Gaps = 23/642 (3%)

Query: 9   FRRGTNLDSGFLQRGQR-LASNGYNIMSTSLDNHINRIVDPRGPF---WNWIWLAVRIIS 64
           F+RG    S  ++R ++ L S  +    T   N  N+I+DP+GPF   WN I++   +I+
Sbjct: 46  FQRGLESGSERIKRIRKSLKSYSFGSAVTKGLNSGNKILDPQGPFLQRWNKIFVLSCLIA 105

Query: 65  TSLDPLFFYIFVVNDHKKCVDLDIKLAIIAISLRTIFDFFNIIYSSSTPHKHSRANAKKC 124
            SLDPLFFY+ V+ND +KC+ LD ++ I+A  LR   D F II+          A + + 
Sbjct: 106 VSLDPLFFYVPVINDIEKCLGLDSRMEIVASVLRWFTDIFYIIHIIFQFRTGFIAPSSRV 165

Query: 125 F---------------YLNS-FLKDLLSCLPIPQLVTSIIIITSKGSGFFPAMVWLKVVV 168
           F               YL+S FL D+L+ LP+PQ+V  III   KGS        LK VV
Sbjct: 166 FGRGVLVEDTWEIAKRYLSSYFLIDILAVLPLPQVVILIIIPKMKGSRSLNTKNLLKFVV 225

Query: 169 IVQYVPRFYRIYRLYAVAESTSGILAQMKWVKSACCILIYLLAAHVFGALWYFMAIERET 228
           + QY+PRF RIY LY     TSGIL +  W  +A  + +Y+LA+HV GA WY ++IERET
Sbjct: 226 LFQYIPRFMRIYPLYKEVTRTSGILTETAWAGAAFNLFLYMLASHVLGAFWYLVSIERET 285

Query: 229 ECWKKACREHTECYQNSFHCYETVG-NYTFLTGLCPTMIQDTTMFNFGMFQEAIQSGMVE 287
            CWKKAC +H  C ++S +C    G N TFL G CP  I +T +FNFG+F +A+QSG+V 
Sbjct: 286 VCWKKACDDHIGCVRDSLYCGNQAGVNKTFLDGACPVQIPNTEIFNFGIFLDALQSGVVA 345

Query: 288 EKAFKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYL 347
              F KKF YCF WGL+ +S  GQNL+TST   E   A  I I  L+L   ++GN+  YL
Sbjct: 346 THDFPKKFFYCFWWGLRNLSSLGQNLETSTFVWEICFAVSISIFGLVLFSFLIGNMQTYL 405

Query: 348 QSGTIKLEEIKSKAREIEQWRTFEMLSQSLQQRVRNHQQYVWQEMRGIDVENLLNNLPVN 407
           QS T +LEE++ K R+ EQW +  +L ++L++R+R H+QY WQE RG+D ENL+ NLP +
Sbjct: 406 QSTTTRLEEMRVKRRDAEQWMSHRLLPENLRERIRRHEQYKWQETRGVDEENLVCNLPRD 465

Query: 408 LNWEMKSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFIT 467
           L  ++K  LCL +L +VPMF+ M + +L  MC  LKP LY +E  IV+EGDP+ EM FI 
Sbjct: 466 LRRDIKRHLCLALLMRVPMFEKMDEQLLDAMCDRLKPALYTEESYIVREGDPVDEMLFIM 525

Query: 468 QGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEA 527
           +G LLT TTNGGR      +YL  GDF GEEL T ALDP+  SN+P S   + ++T VEA
Sbjct: 526 RGKLLTMTTNGGRTGFFNSEYLKAGDFCGEELLTWALDPNSSSNLPISTRTVQTLTEVEA 585

Query: 528 FAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRKLEGSL 587
           FA+  DDL+ +  Q+   R H+ Q    F+FYSQ+WRT  AC IQAAW RY K+KLE SL
Sbjct: 586 FALMADDLKFVASQF--RRLHSKQLRHTFRFYSQQWRTWAACFIQAAWRRYSKKKLEESL 643

Query: 588 YAKENILQDQKAEAGGKPSKFGTAIYATQFFTYVRRSVKRNG 629
             +EN LQD  A+  G     G  IYA++F     R+++R G
Sbjct: 644 RQEENRLQDALAKTSGNSPSLGATIYASRFAANALRALRRTG 685

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356509281|ref|XP_003523379.1| PREDICTED: cyclic nucleotide-gated ion channel 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356516029|ref|XP_003526699.1| PREDICTED: cyclic nucleotide-gated ion channel 1-like [Glycine max] Back     alignment and taxonomy information
>gi|224135235|ref|XP_002322017.1| predicted protein [Populus trichocarpa] gi|222869013|gb|EEF06144.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225462733|ref|XP_002268992.1| PREDICTED: cyclic nucleotide-gated ion channel 1 [Vitis vinifera] gi|302143681|emb|CBI22542.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224118210|ref|XP_002317760.1| predicted protein [Populus trichocarpa] gi|222858433|gb|EEE95980.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356551532|ref|XP_003544128.1| PREDICTED: cyclic nucleotide-gated ion channel 1-like [Glycine max] Back     alignment and taxonomy information
>gi|15238657|ref|NP_200125.1| cyclic nucleotide-gated ion channel 1 [Arabidopsis thaliana] gi|38502855|sp|O65717.1|CNGC1_ARATH RecName: Full=Cyclic nucleotide-gated ion channel 1; Short=AtCNGC1; AltName: Full=Cyclic nucleotide- and calmodulin-regulated ion channel 1 gi|13877753|gb|AAK43954.1|AF370139_1 putative cyclic nucleotide-regulated ion channel protein [Arabidopsis thaliana] gi|3096947|emb|CAA76178.1| putative cyclic nucleotide-regulated ion channel [Arabidopsis thaliana] gi|9757994|dbj|BAB08416.1| cyclic nucleotide-regulated ion channel [Arabidopsis thaliana] gi|24030485|gb|AAN41391.1| putative cyclic nucleotide-regulated ion channel protein [Arabidopsis thaliana] gi|332008928|gb|AED96311.1| cyclic nucleotide-gated ion channel 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297796139|ref|XP_002865954.1| hypothetical protein ARALYDRAFT_918383 [Arabidopsis lyrata subsp. lyrata] gi|297311789|gb|EFH42213.1| hypothetical protein ARALYDRAFT_918383 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449456377|ref|XP_004145926.1| PREDICTED: cyclic nucleotide-gated ion channel 1-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query648
TAIR|locus:2118836733 CNGC9 "cyclic nucleotide gated 0.871 0.770 0.350 3.5e-107
TAIR|locus:2163776716 CNGC1 "cyclic nucleotide gated 0.787 0.712 0.418 2.2e-105
TAIR|locus:2061401747 CNGC6 "cyclic nucleotide-gated 0.884 0.767 0.354 1.1e-96
TAIR|locus:2039084706 CNGC3 "cyclic nucleotide gated 0.780 0.716 0.382 1e-91
TAIR|locus:2174448717 CNGC5 "cyclic nucleotide gated 0.882 0.797 0.339 1.7e-89
TAIR|locus:2125206696 CNGC13 "cyclic nucleotide-gate 0.774 0.721 0.375 8.6e-88
TAIR|locus:2200502738 CNGC7 "cyclic nucleotide gated 0.699 0.613 0.365 8.7e-79
TAIR|locus:2118816720 CNGC17 "cyclic nucleotide-gate 0.725 0.652 0.327 2.8e-78
TAIR|locus:2013139753 CNGC8 "cyclic nucleotide gated 0.712 0.613 0.359 4.3e-77
TAIR|locus:2062814678 CNGC15 "cyclic nucleotide-gate 0.743 0.710 0.336 6.7e-72
TAIR|locus:2118836 CNGC9 "cyclic nucleotide gated channel 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 936 (334.5 bits), Expect = 3.5e-107, Sum P(2) = 3.5e-107
 Identities = 211/602 (35%), Positives = 314/602 (52%)

Query:    54 NWIWLAVRIISTSLDPLFFYIFVVNDHKKCVDLDIKLAIIAISLRTIFDFFNIIYSSSTP 113
             N +++   I++ S+DPLF Y+  V D++KC+ +D KLAIIA +LRT+ D F + + +   
Sbjct:   115 NKLFVTSCILAVSVDPLFLYLPFVKDNEKCIGIDRKLAIIATTLRTVIDAFYLFHMALRF 174

Query:   114 HKHSRANAKKCF---------------YLNS-FLKDLLSCLPIPQLVXXXXXXXXKGSGF 157
                  A + + F               YL   F+ D LS LP+PQ+V        KG+  
Sbjct:   175 RTAFVAPSSRVFGRGELVIDPAQIAKRYLQQYFIIDFLSVLPLPQIVVWRFLYISKGASV 234

Query:   158 FPAMVWLKVVVIVQYVPRFYRIYRLYAVAESTSGILAQMKWVKSACCILIYLLAAHVFGA 217
                   L+ +++VQY+PRF R+Y L +  + T+G+ A+  W  +A  +L+Y+LA+H+ GA
Sbjct:   235 LATKRALRSIILVQYIPRFIRLYPLSSELKRTAGVFAETAWAGAAYYLLLYMLASHIVGA 294

Query:   218 LWYFMAIERETECWKKACREHT-ECYQNSFHC-YETVGNYTFLTGL--------CPTMIQ 267
             +WY +A+ER   CW K C   + +C++N   C  E +  Y   T +        CP    
Sbjct:   295 IWYLLALERYNGCWTKVCSNSSLDCHRNFLFCGNEKMDGYAAWTTIKDSVLQLNCPVNTT 354

Query:   268 DTTMFNFGMFQEAIQSGMVEEKAFKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENXXXXX 327
             D   F+FG++  A+ SG+V  K+F  K+ +C  WGLQ +S  GQ L+TST+ GE      
Sbjct:   355 DNPPFDFGIYLRALSSGIVSSKSFVSKYFFCLWWGLQNLSTLGQGLETSTYPGEVIFSIA 414

Query:   328 XXXXXXXXXXXXXXXXXXXXQSGTIKLEEIKSKAREIEQWRTFEMLSQSLQQRVRNHQQY 387
                                 QS TI+LEE++ K R+ EQW    ML   L++RVR + QY
Sbjct:   415 LAIAGLLLFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRMLPPELRERVRRYDQY 474

Query:   388 VWQEMRGIDVEXXXXXXXXXXXWEMKSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLY 447
              W E RG+D E            ++K  LCL ++++VP+F+ M + +L  +C+ LKP LY
Sbjct:   475 KWLETRGVDEENLVQNLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLY 534

Query:   448 VQECCIVKEGDPICEMFFIXXXXXXXXXXXXXXXXSVFKKYLSTGDFWGEELATSALDPD 507
              +   +V+EGDP+ EM FI                   +  L  GDF GEEL T ALDP 
Sbjct:   535 TESSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFFNRSLLKEGDFCGEELLTWALDPK 594

Query:   508 PLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSK 567
               SN+P S     ++T VEAFA+  D+L+ +  Q+   R H+ Q    F+FYSQ+WRT  
Sbjct:   595 SGSNLPSSTRTAKALTEVEAFALIADELKFVASQF--RRLHSRQVQHTFRFYSQQWRTWA 652

Query:   568 ACVIQAAWCRY-KKRKLEGSLYAKENILQDQKAEAGGKPSKFGTAIYATQFFTYVRRSVK 626
             A  IQAAW RY KK+KLE         L+ ++ E  G  +       A++F     R V 
Sbjct:   653 AIFIQAAWRRYVKKKKLEQ--------LRKEEEEGEGSVTSIRATFLASKFAANALRKVH 704

Query:   627 RN 628
             +N
Sbjct:   705 KN 706
GO:0005216 "ion channel activity" evidence=IEA;ISS
GO:0005249 "voltage-gated potassium channel activity" evidence=IEA
GO:0005516 "calmodulin binding" evidence=ISS;TAS;IPI
GO:0005886 "plasma membrane" evidence=ISM
GO:0006811 "ion transport" evidence=IEA
GO:0006813 "potassium ion transport" evidence=IEA
GO:0016020 "membrane" evidence=IEA;IDA
GO:0030551 "cyclic nucleotide binding" evidence=ISS
GO:0055085 "transmembrane transport" evidence=IEA
GO:0009294 "DNA mediated transformation" evidence=RCA
TAIR|locus:2163776 CNGC1 "cyclic nucleotide gated channel 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061401 CNGC6 "cyclic nucleotide-gated channel 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039084 CNGC3 "cyclic nucleotide gated channel 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174448 CNGC5 "cyclic nucleotide gated channel 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125206 CNGC13 "cyclic nucleotide-gated channel 13" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200502 CNGC7 "cyclic nucleotide gated channel 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2118816 CNGC17 "cyclic nucleotide-gated channel 17" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2013139 CNGC8 "cyclic nucleotide gated channel 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2062814 CNGC15 "cyclic nucleotide-gated channel 15" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O65717CNGC1_ARATHNo assigned EC number0.45300.91040.8240yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pm.C_LG_XV000064
hypothetical protein (708 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query648
cd00038115 cd00038, CAP_ED, effector domain of the CAP family 6e-11
smart00100120 smart00100, cNMP, Cyclic nucleotide-monophosphate 6e-06
pfam0002791 pfam00027, cNMP_binding, Cyclic nucleotide-binding 8e-06
>gnl|CDD|237999 cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor Back     alignment and domain information 
 Score = 59.6 bits (145), Expect = 6e-11
 Identities = 25/115 (21%), Positives = 48/115 (41%), Gaps = 12/115 (10%)

Query: 426 MFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTL-LTTTTNGGRNTSV 484
           +F  +    L E+   L+   +     I+++GDP   ++ +  G++ +      GR   V
Sbjct: 1   LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIV 60

Query: 485 FKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIV 539
              +L  GD +GE           L N P S   + ++T+ E   +   D R ++
Sbjct: 61  G--FLGPGDLFGELAL--------LGNGPRS-ATVRALTDSELLVLPRSDFRRLL 104

In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels. Length = 115
>gnl|CDD|197516 smart00100, cNMP, Cyclic nucleotide-monophosphate binding domain Back     alignment and domain information
>gnl|CDD|215664 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 648
KOG0498727 consensus K+-channel ERG and related proteins, con 100.0
PLN03192 823 Voltage-dependent potassium channel; Provisional 100.0
KOG0500536 consensus Cyclic nucleotide-gated cation channel C 100.0
KOG0499815 consensus Cyclic nucleotide-gated cation channel C 100.0
KOG0501 971 consensus K+-channel KCNQ [Inorganic ion transport 100.0
PRK09392236 ftrB transcriptional activator FtrB; Provisional 99.71
PRK11753211 DNA-binding transcriptional dual regulator Crp; Pr 99.66
PRK11161235 fumarate/nitrate reduction transcriptional regulat 99.6
KOG3713477 consensus Voltage-gated K+ channel KCNB/KCNC [Inor 99.58
PRK10402226 DNA-binding transcriptional activator YeiL; Provis 99.54
PRK09391230 fixK transcriptional regulator FixK; Provisional 99.49
TIGR03697193 NtcA_cyano global nitrogen regulator NtcA, cyanoba 99.43
COG0664214 Crp cAMP-binding proteins - catabolite gene activa 99.41
cd00038115 CAP_ED effector domain of the CAP family of transc 99.37
PF0002791 cNMP_binding: Cyclic nucleotide-binding domain; In 99.34
PRK13918202 CRP/FNR family transcriptional regulator; Provisio 99.29
KOG1545507 consensus Voltage-gated shaker-like K+ channel KCN 99.29
smart00100120 cNMP Cyclic nucleotide-monophosphate binding domai 99.28
KOG1419654 consensus Voltage-gated K+ channel KCNQ [Inorganic 99.25
PF00520200 Ion_trans: Ion transport protein calcium channel s 99.17
PLN02868 413 acyl-CoA thioesterase family protein 99.16
KOG0614 732 consensus cGMP-dependent protein kinase [Signal tr 99.15
COG2905 610 Predicted signal-transduction protein containing c 99.12
KOG1113368 consensus cAMP-dependent protein kinase types I an 99.11
PF0788579 Ion_trans_2: Ion channel; InterPro: IPR013099 This 99.1
KOG0614 732 consensus cGMP-dependent protein kinase [Signal tr 99.08
KOG1113368 consensus cAMP-dependent protein kinase types I an 98.67
KOG4390632 consensus Voltage-gated A-type K+ channel KCND [In 98.65
PRK10537393 voltage-gated potassium channel; Provisional 98.41
KOG1420 1103 consensus Ca2+-activated K+ channel Slowpoke, alph 98.3
KOG3684489 consensus Ca2+-activated K+ channel proteins (inte 97.94
PF01007336 IRK: Inward rectifier potassium channel; InterPro: 97.92
KOG2968 1158 consensus Predicted esterase of the alpha-beta hyd 97.77
PRK11832207 putative DNA-binding transcriptional regulator; Pr 97.47
KOG1418433 consensus Tandem pore domain K+ channel [Inorganic 97.45
PF0841277 Ion_trans_N: Ion transport protein N-terminal; Int 97.29
PF04831153 Popeye: Popeye protein conserved region; InterPro: 97.14
KOG2968 1158 consensus Predicted esterase of the alpha-beta hyd 97.09
KOG3827400 consensus Inward rectifier K+ channel [Inorganic i 96.3
KOG4404350 consensus Tandem pore domain K+ channel TASK3/THIK 96.26
KOG4404350 consensus Tandem pore domain K+ channel TASK3/THIK 96.21
KOG3542 1283 consensus cAMP-regulated guanine nucleotide exchan 95.55
KOG1418433 consensus Tandem pore domain K+ channel [Inorganic 95.2
KOG2302 1956 consensus T-type voltage-gated Ca2+ channel, pore- 94.45
KOG3193 1087 consensus K+ channel subunit [Inorganic ion transp 92.35
KOG3542 1283 consensus cAMP-regulated guanine nucleotide exchan 91.07
COG4709195 Predicted membrane protein [Function unknown] 81.44
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=8.9e-93  Score=785.45  Aligned_cols=540  Identities=36%  Similarity=0.653  Sum_probs=471.8

Q ss_pred             cccCceecCCCcc---hHHHHHHHHHHHHhhcceeEEEEEEcCCcceeeecccceeehhhhHHHHHHhhhh-----hc--
Q 006374           40 NHINRIVDPRGPF---WNWIWLAVRIISTSLDPLFFYIFVVNDHKKCVDLDIKLAIIAISLRTIFDFFNII-----YS--  109 (648)
Q Consensus        40 ~~~~~vi~P~s~~---Wd~~~~~~~l~~~~~~Pl~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~D~~f~~-----f~--  109 (648)
                      ....+||||.|+|   ||.+++++|+|+++++|++++|+..++...|  +|......++++|.++|++|++     |+  
T Consensus        64 ~~~~~Ii~P~s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~--~d~~~~~~l~v~d~ivD~fflvdIvL~Frta  141 (727)
T KOG0498|consen   64 KSRKWILDPYSPFYRVWNKFFLLLVIYAAFVDPLFFYFLLIDDERKC--IDGKLAAPLTVLDTIVDIFFLVDIVLNFRTA  141 (727)
T ss_pred             cccceeECCCChHHHHHHHHHHHHHHHHHHhccceeeEEeccccccc--ccccccCceeeHHHHHHHHHHHHHHHhheEE
Confidence            3446699999999   9999999999999999999999999888888  7877888899999999999999     54  


Q ss_pred             ----CC-ccccChhHhhhhhhhhHH-hHHHhhhcCCccchhheeeeccCCCCCccchhhHHHHHHHHHHhHHHHHHHHHH
Q 006374          110 ----SS-TPHKHSRANAKKCFYLNS-FLKDLLSCLPIPQLVTSIIIITSKGSGFFPAMVWLKVVVIVQYVPRFYRIYRLY  183 (648)
Q Consensus       110 ----~~-~~v~d~~~Ia~~~~Ylk~-F~iDlls~lP~~~i~~~~~~~~~~~~~~~~~~~llrl~~l~~~l~rl~ri~rl~  183 (648)
                          ++ ++|.||++||+  ||+++ |++|++|++|+++++.|.++  ..++.... ...+..+.+++|++|+.|+.+++
T Consensus       142 yv~~~s~elV~dpk~IA~--rYl~twFiiDlis~lP~~~i~~~~~~--~~~~~~~~-~~~l~~il~~~rL~Rl~Rv~~l~  216 (727)
T KOG0498|consen  142 YVDPSSYELVDDPKKIAK--RYLKTWFLIDLISTLPFDQIVVLVVI--GSTSLALE-STILVGILLLQRLPRLRRVIPLF  216 (727)
T ss_pred             EECCCCceeeeCHHHHHH--HHHhhhHHHHHHHhcChhhheeeeee--cccchhhh-HHHHHHHHHHHHHHHHHHHHHHH
Confidence                34 49999999999  99999 99999999999999998765  11111111 22455555667799999999999


Q ss_pred             HHHhhccchhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhccCCcccccccccCCCCccccccccCC
Q 006374          184 AVAESTSGILAQMKWVKSACCILIYLLAAHVFGALWYFMAIERETECWKKACREHTECYQNSFHCYETVGNYTFLTGLCP  263 (648)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~l~~~ll~~H~~aC~wy~~~~~~~~~~w~~~c~~~~~c~~~~~~~~~~~~~~~W~~~~~~  263 (648)
                      +++++..+++.+++|++.++++++|++++||.||+||++|.++.+.||+++                     +|+...+.
T Consensus       217 ~r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~---------------------tw~~~l~~  275 (727)
T KOG0498|consen  217 ARLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKA---------------------TWLGSLGR  275 (727)
T ss_pred             HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccc---------------------cccccccc
Confidence            999999999999999997788889999999999999999999988898643                     45543211


Q ss_pred             CCcCCCCccccchhHHHHhhccccccchHHHHHHHHHhhhhccccccccCcccCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 006374          264 TMIQDTTMFNFGMFQEAIQSGMVEEKAFKKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNL  343 (648)
Q Consensus       264 ~~~~~~~~~~~g~y~~~l~~~~~~~~~~~~~Yi~slYwa~~TmttvGyGdi~p~~~~E~i~~i~~~i~G~~~fa~iig~i  343 (648)
                      ..++.+..|+||+|.            ++.+|++|+||+++||||+||||.+|+|..|++|+|++|++|.++||++||||
T Consensus       276 ~~~~~~~~~~fg~~s------------~~~kY~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNm  343 (727)
T KOG0498|consen  276 LLSCYNLSFTFGIYS------------LALKYVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNM  343 (727)
T ss_pred             ccccCcccccccchh------------HHHHHHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhH
Confidence            111233446788765            45699999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhccccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcCCCHHHHHhcccccchhhhHHHHHHHHhcC
Q 006374          344 TIYLQSGTIKLEEIKSKAREIEQWRTFEMLSQSLQQRVRNHQQYVWQEMRGIDVENLLNNLPVNLNWEMKSELCLEVLKK  423 (648)
Q Consensus       344 ~~ii~~~~~~~~~~~~~~~~i~~~m~~~~lp~~L~~rv~~y~~~~~~~~~~~~e~~ll~~Lp~~Lr~~i~~~~~~~~L~~  423 (648)
                      +++++.++.+.++|+.+|.++++||++++||++||+||++|++|+|..++|+||+++|++||++||.+|++|+|.+++++
T Consensus       344 t~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~~~lv~~  423 (727)
T KOG0498|consen  344 TALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLCLDLVRK  423 (727)
T ss_pred             HHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHhHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccccCCHHHHHHHHhcCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEechhhhcc
Q 006374          424 VPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSA  503 (648)
Q Consensus       424 i~~F~~ls~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~  503 (648)
                      +|+|+++|++.+.+|+.++++..|+|||+|++|||+.++||||.+|.+++...+||.+  .+...+++||+|||+-+.|+
T Consensus       424 vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~~~g~~--~~~~~L~~Gd~~GeEl~~~~  501 (727)
T KOG0498|consen  424 VPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITTDGGGF--FVVAILGPGDFFGEELLTWC  501 (727)
T ss_pred             CchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEccCCce--EEEEEecCCCccchHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999877644  35899999999996655566


Q ss_pred             CCCCCCCCCCCcceEEEEeceEEEEEEeHHHHHHHHHhchhhhhhhhhhHHHHhhhchhhhhhHHhHHHHHHHHHHhhhh
Q 006374          504 LDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVYQYWQHRNHNMQPLDIFKFYSQEWRTSKACVIQAAWCRYKKRKL  583 (648)
Q Consensus       504 l~~~~~~~~~~~~~tv~A~~~~~ll~Ls~~df~~ll~~~P~~~l~~~~l~~~~r~~s~~~~~~~~~~~e~~~~~~~~r~~  583 (648)
                      ++      .| +++||+|+|.|+++.|+++||..++++|  +++++++++++|++|+++|++|+++.+|.+|+++.+|..
T Consensus       502 ~~------~p-~t~TVralt~~el~~L~~~dL~~V~~~f--~~~~~~~l~~~~r~~s~~~r~~aa~~iq~a~r~~~~~~~  572 (727)
T KOG0498|consen  502 LD------LP-QTRTVRALTYCELFRLSADDLKEVLQQF--RRLGSKFLQHTFRYYSHLWRTWAACFIQAAWRRHIKRKG  572 (727)
T ss_pred             hc------CC-CCceeehhhhhhHHhccHHHHHHHHHHh--HHHHHHHHHhHHHHhhhhhhhhhhhhHHHHHHHHHHhhc
Confidence            53      23 5889999999999999999999999999  799999999999999999999999999999999999986


Q ss_pred             hhhHHHHHhhhhhhhhhcCCCCCcchhHHHHHHHHHHHHHHhhhcCCC
Q 006374          584 EGSLYAKENILQDQKAEAGGKPSKFGTAIYATQFFTYVRRSVKRNGGL  631 (648)
Q Consensus       584 ~~~~~~a~ery~~~~~~~p~~~~~~~~~~iAs~~~~~~~~~~~~~~~~  631 (648)
                      ....... +.....-...++..+.+.....|+++|+|.++..+.+..+
T Consensus       573 ~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  619 (727)
T KOG0498|consen  573 EEELALE-EEESAIRGDDRGSKSLLRAGILASRFAANGRPPLHTAASR  619 (727)
T ss_pred             cchhhhh-cchhhhccccccchhhhhcccccccccccCCCcccccccc
Confidence            6544332 1211222255667788999999999999999988776433

>PLN03192 Voltage-dependent potassium channel; Provisional Back     alignment and domain information
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK09392 ftrB transcriptional activator FtrB; Provisional Back     alignment and domain information
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional Back     alignment and domain information
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional Back     alignment and domain information
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional Back     alignment and domain information
>PRK09391 fixK transcriptional regulator FixK; Provisional Back     alignment and domain information
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial Back     alignment and domain information
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms] Back     alignment and domain information
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor Back     alignment and domain information
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ] Back     alignment and domain information
>PRK13918 CRP/FNR family transcriptional regulator; Provisional Back     alignment and domain information
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism] Back     alignment and domain information
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain Back     alignment and domain information
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins Back     alignment and domain information
>PLN02868 acyl-CoA thioesterase family protein Back     alignment and domain information
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms] Back     alignment and domain information
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria [] Back     alignment and domain information
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10537 voltage-gated potassium channel; Provisional Back     alignment and domain information
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only] Back     alignment and domain information
>PRK11832 putative DNA-binding transcriptional regulator; Provisional Back     alignment and domain information
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels Back     alignment and domain information
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle Back     alignment and domain information
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only] Back     alignment and domain information
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms] Back     alignment and domain information
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms] Back     alignment and domain information
>COG4709 Predicted membrane protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query648
1wgp_A137 Solution Structure Of The Cnmp-Binding Domain From 6e-18
>pdb|1WGP|A Chain A, Solution Structure Of The Cnmp-Binding Domain From Arabidopsis Thaliana Cyclic Nucleotide-Regulated Ion Channel Length = 137 Back     alignment and structure 
Iteration: 1

 Score = 89.4 bits (220), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 44/122 (36%), Positives = 70/122 (57%)
Query: 421 LKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFIXXXXXXXXXXXXXX 480
           +++VP+F+ M + +L  +C+ LKP L+ ++  +V+EGDP+ EM FI              
Sbjct: 8   VRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGR 67
Query: 481 XXSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAIVY 540
                +  L  GDF G+EL T ALDP   SN+P S   + ++T VEAFA+  D+L+ +  
Sbjct: 68  SGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVAS 127
Query: 541 QY 542
           Q+
Sbjct: 128 QF 129

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query648
3ukn_A212 Novel protein similar to vertebrate potassium VOL 8e-41
2ptm_A198 Hyperpolarization-activated (IH) channel; ION chan 3e-39
3bpz_A202 Potassium/sodium hyperpolarization-activated cycli 2e-38
1wgp_A137 Probable cyclic nucleotide-gated ION channel 6; cy 2e-31
4f8a_A160 Potassium voltage-gated channel subfamily H membe; 3e-27
3gyd_A187 CNMP-BD protein, cyclic nucleotide-binding domain; 6e-14
1vp6_A138 CNBD, cyclic-nucleotide binding domain of mesorhiz 2e-13
3shr_A299 CGMP-dependent protein kinase 1; cyclic nucleotide 2e-12
3shr_A299 CGMP-dependent protein kinase 1; cyclic nucleotide 9e-09
2qcs_B291 CAMP-dependent protein kinase type I-alpha regula 4e-12
2qcs_B291 CAMP-dependent protein kinase type I-alpha regula 6e-08
4din_B381 CAMP-dependent protein kinase type I-beta regulat 4e-12
4din_B381 CAMP-dependent protein kinase type I-beta regulat 2e-07
2d93_A134 RAP guanine nucleotide exchange factor 6; CNMP_bin 3e-11
3tnp_B416 CAMP-dependent protein kinase type II-beta regula 4e-11
3tnp_B416 CAMP-dependent protein kinase type II-beta regula 6e-09
3mdp_A142 Cyclic nucleotide-binding domain (CNMP-BD) protei; 9e-11
3idb_B161 CAMP-dependent protein kinase type II-beta regulat 1e-10
2pqq_A149 Putative transcriptional regulator; APC7345, strep 5e-10
3of1_A246 CAMP-dependent protein kinase regulatory subunit; 6e-10
3of1_A246 CAMP-dependent protein kinase regulatory subunit; 3e-09
2z69_A154 DNR protein; beta barrel, dimerization helix, tran 1e-09
3d0s_A227 Transcriptional regulatory protein; CAMP receptor 1e-09
1o7f_A 469 CAMP-dependent RAP1 guanine-nucleotide exchange fa 3e-09
1o7f_A469 CAMP-dependent RAP1 guanine-nucleotide exchange fa 1e-05
3e97_A231 Transcriptional regulator, CRP/FNR family; YP_6044 3e-09
3ocp_A139 PRKG1 protein; serine/threonine kinase, TF2I and I 9e-09
4ava_A 333 Lysine acetyltransferase; allosteric regulation, d 1e-08
3fx3_A237 Cyclic nucleotide-binding protein; helix_TURN_heli 2e-08
1zyb_A232 Transcription regulator, CRP family; NP_813211.1, 2e-08
4ev0_A216 Transcription regulator, CRP family; CAMP binding, 2e-08
3pna_A154 CAMP-dependent protein kinase type I-alpha regula 3e-08
3kcc_A260 Catabolite gene activator; helix-turn-helix, CAMP, 5e-08
3dkw_A227 DNR protein; CRP-FNR, HTH, beta barrel, dimerizati 3e-07
1o5l_A213 Transcriptional regulator, CRP family; TM1171, str 5e-07
2fmy_A220 COOA, carbon monoxide oxidation system transcripti 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
3ryp_A210 Catabolite gene activator; CAMP receptor protein ( 1e-05
3iwz_A230 CAP-like, catabolite activation-like protein; XCC, 1e-05
1ft9_A222 Carbon monoxide oxidation system transcription reg 1e-05
3dv8_A220 Transcriptional regulator, CRP/FNR family; cyclic 3e-05
2gau_A232 Transcriptional regulator, CRP/FNR family; structu 5e-05
3e6c_C250 CPRK, cyclic nucleotide-binding protein; CPRK, hal 6e-05
2oz6_A207 Virulence factor regulator; winged helix, helix-tu 6e-05
3la7_A243 Global nitrogen regulator; activator, DNA-binding, 9e-05
3beh_A355 MLL3241 protein; transmembrane protein, membrane p 3e-04
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B Length = 212 Back     alignment and structure
 Score =  147 bits (372), Expect = 8e-41
 Identities = 38/202 (18%), Positives = 82/202 (40%), Gaps = 14/202 (6%)

Query: 347 LQSGTIKLEEIKSKAREIEQWRTFEMLSQSLQQRVRNHQQYVWQEMRGIDVENLLNNLPV 406
            Q    +     ++ ++++ +     L ++L QR+    Q  W    GIDV  LL + P 
Sbjct: 4   DQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPD 63

Query: 407 NLNWEMKSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFI 466
            L  ++   L  E+L ++P+F+   +  L  +   +K         ++++GD +  ++F+
Sbjct: 64  ELRADIAMHLNKELL-QLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFV 122

Query: 467 TQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVE 526
             G++     N           L  GD  G +  T          +  +N  + ++T  +
Sbjct: 123 CSGSMEVLKDNTVLAI------LGKGDLIGSDSLTK-------EQVIKTNANVKALTYCD 169

Query: 527 AFAINTDDLRAIVYQYWQHRNH 548
              I+   LR ++  Y ++   
Sbjct: 170 LQYISLKGLREVLRLYPEYAQK 191
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} Length = 198 Back     alignment and structure
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* Length = 202 Back     alignment and structure
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 Length = 137 Back     alignment and structure
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} Length = 160 Back     alignment and structure
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} Length = 187 Back     alignment and structure
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A Length = 138 Back     alignment and structure
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299 Back     alignment and structure
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299 Back     alignment and structure
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291 Back     alignment and structure
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291 Back     alignment and structure
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381 Back     alignment and structure
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381 Back     alignment and structure
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} Length = 134 Back     alignment and structure
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416 Back     alignment and structure
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416 Back     alignment and structure
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} Length = 142 Back     alignment and structure
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* Length = 161 Back     alignment and structure
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} Length = 149 Back     alignment and structure
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246 Back     alignment and structure
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246 Back     alignment and structure
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} Length = 154 Back     alignment and structure
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* Length = 227 Back     alignment and structure
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Length = 469 Back     alignment and structure
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Length = 469 Back     alignment and structure
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} Length = 231 Back     alignment and structure
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* Length = 139 Back     alignment and structure
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* Length = 333 Back     alignment and structure
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* Length = 237 Back     alignment and structure
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2 Length = 232 Back     alignment and structure
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} Length = 216 Back     alignment and structure
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* Length = 154 Back     alignment and structure
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} Length = 260 Back     alignment and structure
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} Length = 227 Back     alignment and structure
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 Length = 213 Back     alignment and structure
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* Length = 220 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ... Length = 210 Back     alignment and structure
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV} Length = 230 Back     alignment and structure
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1 Length = 222 Back     alignment and structure
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} Length = 220 Back     alignment and structure
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2 Length = 232 Back     alignment and structure
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A Length = 250 Back     alignment and structure
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2 Length = 207 Back     alignment and structure
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A* Length = 243 Back     alignment and structure
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Length = 355 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query648
3beh_A355 MLL3241 protein; transmembrane protein, membrane p 100.0
3bpz_A202 Potassium/sodium hyperpolarization-activated cycli 99.97
3ukn_A212 Novel protein similar to vertebrate potassium VOL 99.97
2ptm_A198 Hyperpolarization-activated (IH) channel; ION chan 99.97
3dn7_A194 Cyclic nucleotide binding regulatory protein; stru 99.86
1orq_C223 Potassium channel; voltage-dependent, KVAP, FAB co 99.85
4ev0_A216 Transcription regulator, CRP family; CAMP binding, 99.81
3dv8_A220 Transcriptional regulator, CRP/FNR family; cyclic 99.79
4f8a_A160 Potassium voltage-gated channel subfamily H membe; 99.78
3fx3_A237 Cyclic nucleotide-binding protein; helix_TURN_heli 99.78
3e97_A231 Transcriptional regulator, CRP/FNR family; YP_6044 99.77
3d0s_A227 Transcriptional regulatory protein; CAMP receptor 99.77
3dkw_A227 DNR protein; CRP-FNR, HTH, beta barrel, dimerizati 99.76
1zyb_A232 Transcription regulator, CRP family; NP_813211.1, 99.76
2gau_A232 Transcriptional regulator, CRP/FNR family; structu 99.75
2fmy_A220 COOA, carbon monoxide oxidation system transcripti 99.74
3gyd_A187 CNMP-BD protein, cyclic nucleotide-binding domain; 99.73
3iwz_A230 CAP-like, catabolite activation-like protein; XCC, 99.73
1ft9_A222 Carbon monoxide oxidation system transcription reg 99.72
2oz6_A207 Virulence factor regulator; winged helix, helix-tu 99.71
3ryp_A210 Catabolite gene activator; CAMP receptor protein ( 99.71
3ocp_A139 PRKG1 protein; serine/threonine kinase, TF2I and I 99.71
2pqq_A149 Putative transcriptional regulator; APC7345, strep 99.7
3idb_B161 CAMP-dependent protein kinase type II-beta regulat 99.7
1o5l_A213 Transcriptional regulator, CRP family; TM1171, str 99.69
2r9r_B514 Paddle chimera voltage gated potassium channel KV; 99.69
3kcc_A260 Catabolite gene activator; helix-turn-helix, CAMP, 99.67
3mdp_A142 Cyclic nucleotide-binding domain (CNMP-BD) protei; 99.67
1wgp_A137 Probable cyclic nucleotide-gated ION channel 6; cy 99.66
3e6c_C250 CPRK, cyclic nucleotide-binding protein; CPRK, hal 99.64
2z69_A154 DNR protein; beta barrel, dimerization helix, tran 99.63
2a9h_A155 Voltage-gated potassium channel; potassium channel 99.61
3pna_A154 CAMP-dependent protein kinase type I-alpha regula 99.61
3la7_A243 Global nitrogen regulator; activator, DNA-binding, 99.6
2d93_A134 RAP guanine nucleotide exchange factor 6; CNMP_bin 99.6
1vp6_A138 CNBD, cyclic-nucleotide binding domain of mesorhiz 99.59
3shr_A299 CGMP-dependent protein kinase 1; cyclic nucleotide 99.59
2bgc_A238 PRFA; bacterial infection, human pathogen, transcr 99.58
3vou_A148 ION transport 2 domain protein, voltage-gated SOD 99.56
4h33_A137 LMO2059 protein; bilayers, KVLM, lipidic cubic pha 99.56
3shr_A299 CGMP-dependent protein kinase 1; cyclic nucleotide 99.53
1o7f_A 469 CAMP-dependent RAP1 guanine-nucleotide exchange fa 99.53
4ava_A 333 Lysine acetyltransferase; allosteric regulation, d 99.53
2ih3_C122 Voltage-gated potassium channel; ION channel D-ami 99.5
3tnp_B416 CAMP-dependent protein kinase type II-beta regula 99.5
2qcs_B291 CAMP-dependent protein kinase type I-alpha regula 99.49
3of1_A246 CAMP-dependent protein kinase regulatory subunit; 99.48
2qcs_B291 CAMP-dependent protein kinase type I-alpha regula 99.48
3of1_A246 CAMP-dependent protein kinase regulatory subunit; 99.47
3b02_A195 Transcriptional regulator, CRP family; structural 99.42
4din_B381 CAMP-dependent protein kinase type I-beta regulat 99.42
3tnp_B416 CAMP-dependent protein kinase type II-beta regula 99.42
3eff_K139 Voltage-gated potassium channel; FULL length KCSA, 99.41
4din_B381 CAMP-dependent protein kinase type I-beta regulat 99.41
1o7f_A469 CAMP-dependent RAP1 guanine-nucleotide exchange fa 99.38
2zcw_A202 TTHA1359, transcriptional regulator, FNR/CRP famil 99.35
4f7z_A 999 RAP guanine nucleotide exchange factor 4; cyclic n 99.3
3cf6_E 694 RAP guanine nucleotide exchange factor (GEF) 4; EP 99.3
2q67_A114 Potassium channel protein; inverted teepee, helix 99.29
2k1e_A103 Water soluble analogue of potassium channel, KCSA; 99.25
4f7z_A 999 RAP guanine nucleotide exchange factor 4; cyclic n 99.18
3ouf_A97 Potassium channel protein; ION channel, membrane, 99.16
3ldc_A82 Calcium-gated potassium channel MTHK; transmembran 99.11
3pjs_K166 KCSA, voltage-gated potassium channel; ION channel 99.08
3rvy_A285 ION transport protein; tetrameric ION channel, vol 99.02
1xl4_A301 Inward rectifier potassium channel; integral membr 98.95
1p7b_A333 Integral membrane channel and cytosolic domains; t 98.9
3um7_A309 Potassium channel subfamily K member 4; potassium 98.84
2qks_A321 KIR3.1-prokaryotic KIR channel chimera; G-protein 98.72
3sya_A340 G protein-activated inward rectifier potassium CH; 98.62
4gx0_A 565 TRKA domain protein; membrane protein, ION channel 98.56
3um7_A309 Potassium channel subfamily K member 4; potassium 98.55
3ukm_A280 Potassium channel subfamily K member 1; membrane p 98.54
3spc_A343 Inward-rectifier K+ channel KIR2.2; PIP, membrane 98.48
3ukm_A280 Potassium channel subfamily K member 1; membrane p 98.4
1lnq_A336 MTHK channels, potassium channel related protein; 98.28
4dxw_A229 Navrh, ION transport protein; tetrameric, voltage- 97.74
2kyh_A147 KVAP, voltage-gated potassium channel; ION channel 95.58
1ors_C132 Potassium channel; voltage-dependent, voltage sens 93.38
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Back     alignment and structure
Probab=100.00  E-value=1.7e-33  Score=300.06  Aligned_cols=177  Identities=19%  Similarity=0.337  Sum_probs=56.0

Q ss_pred             HHHHHHHHHhhhhccccccccCcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhC
Q 006374          292 KKKFIYCFRWGLQTVSCAGQNLQTSTHEGENLLASFIIIASLLLLLLVLGNLTIYLQSGTIKLEEIKSKAREIEQWRTFE  371 (648)
Q Consensus       292 ~~~Yi~slYwa~~TmttvGyGdi~p~~~~E~i~~i~~~i~G~~~fa~iig~i~~ii~~~~~~~~~~~~~~~~i~~~m~~~  371 (648)
                      +..|..|+||+++|||||||||++|.|..|+++++++|++|.+++++.+|.+++.+.+.      .++            
T Consensus       159 f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~------~~~------------  220 (355)
T 3beh_A          159 FGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQE------VRR------------  220 (355)
T ss_dssp             HSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH------------
T ss_pred             cccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH------------
Confidence            45688999999999999999999999999999999999999999999999998776431      110            


Q ss_pred             CCCHHHHHHHHHHHHHHHHHhcCCCHHHHHhcccccchhhhHHHHHHHHhcCCcccccCCHHHHHHHHhcCeeEEecCCe
Q 006374          372 MLSQSLQQRVRNHQQYVWQEMRGIDVENLLNNLPVNLNWEMKSELCLEVLKKVPMFQMMGKSILSEMCKCLKPVLYVQEC  451 (648)
Q Consensus       372 ~lp~~L~~rv~~y~~~~~~~~~~~~e~~ll~~Lp~~Lr~~i~~~~~~~~L~~i~~F~~ls~~~l~~L~~~l~~~~~~kge  451 (648)
                                +++.+                              +.+.++++++|+++++++++.++..++++.++|||
T Consensus       221 ----------~~~~~------------------------------~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge  260 (355)
T 3beh_A          221 ----------GDFVR------------------------------NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGA  260 (355)
T ss_dssp             ----------HHHHH------------------------------HHC--------------------------------
T ss_pred             ----------Hhhcc------------------------------cchhhhcccccccCCHHHHHHHHHhceEEEECCCC
Confidence                      00100                              23567888999999999999999999999999999


Q ss_pred             EEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEechhhhccCCCCCCCCCCCcceEEEEeceEEEEEEe
Q 006374          452 CIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAIN  531 (648)
Q Consensus       452 ~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~~~tv~A~~~~~ll~Ls  531 (648)
                      .|+++||+++++|||.+|.|+++..+  +      ..+++|++|||.+++   .+.      ++.++++|.++|+++.++
T Consensus       261 ~I~~~G~~~~~ly~I~~G~v~v~~~~--~------~~l~~G~~fGe~~~l---~~~------~~~~~~~A~~~~~l~~i~  323 (355)
T 3beh_A          261 VICRIGEPGDRMFFVVEGSVSVATPN--P------VELGPGAFFGEMALI---SGE------PRSATVSAATTVSLLSLH  323 (355)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEeCCCcCceEEEEEeeEEEEEECC--e------eEECCCCEEeehHHh---CCC------CcceEEEECccEEEEEEe
Confidence            99999999999999999999998754  1      578999999999874   222      378999999999999999


Q ss_pred             HHHHHHHHHhch
Q 006374          532 TDDLRAIVYQYW  543 (648)
Q Consensus       532 ~~df~~ll~~~P  543 (648)
                      +++|+++++++|
T Consensus       324 ~~~f~~ll~~~p  335 (355)
T 3beh_A          324 SADFQMLCSSSP  335 (355)
T ss_dssp             ------------
T ss_pred             HHHHHHHHHHCH
Confidence            999999999994
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* Back     alignment and structure
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B Back     alignment and structure
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} Back     alignment and structure
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii} Back     alignment and structure
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A Back     alignment and structure
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} Back     alignment and structure
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} Back     alignment and structure
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} Back     alignment and structure
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* Back     alignment and structure
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} Back     alignment and structure
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* Back     alignment and structure
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} Back     alignment and structure
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2 Back     alignment and structure
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2 Back     alignment and structure
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* Back     alignment and structure
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} Back     alignment and structure
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV} Back     alignment and structure
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1 Back     alignment and structure
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2 Back     alignment and structure
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ... Back     alignment and structure
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* Back     alignment and structure
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} Back     alignment and structure
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* Back     alignment and structure
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 Back     alignment and structure
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Back     alignment and structure
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} Back     alignment and structure
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} Back     alignment and structure
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 Back     alignment and structure
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A Back     alignment and structure
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} Back     alignment and structure
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 Back     alignment and structure
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* Back     alignment and structure
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A* Back     alignment and structure
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} Back     alignment and structure
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A Back     alignment and structure
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Back     alignment and structure
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A Back     alignment and structure
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} Back     alignment and structure
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A Back     alignment and structure
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Back     alignment and structure
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Back     alignment and structure
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* Back     alignment and structure
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... Back     alignment and structure
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Back     alignment and structure
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Back     alignment and structure
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Back     alignment and structure
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Back     alignment and structure
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Back     alignment and structure
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A Back     alignment and structure
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Back     alignment and structure
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Back     alignment and structure
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} Back     alignment and structure
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Back     alignment and structure
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Back     alignment and structure
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus} Back     alignment and structure
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E Back     alignment and structure
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus} Back     alignment and structure
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A Back     alignment and structure
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A Back     alignment and structure
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E Back     alignment and structure
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A Back     alignment and structure
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A Back     alignment and structure
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A Back     alignment and structure
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A* Back     alignment and structure
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* Back     alignment and structure
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* Back     alignment and structure
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} Back     alignment and structure
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} Back     alignment and structure
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A* Back     alignment and structure
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* Back     alignment and structure
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} Back     alignment and structure
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Back     alignment and structure
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A* Back     alignment and structure
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Back     alignment and structure
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Back     alignment and structure
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114} Back     alignment and structure
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix} Back     alignment and structure
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 648
d1wgpa_137 b.82.3.2 (A:) Probable cyclic nucleotide-gated ion 7e-17
d1q3ea_193 b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus mu 1e-12
d1o7fa2155 b.82.3.2 (A:13-167) Regulatory domain of Epac2, do 2e-09
d1ne6a2132 b.82.3.2 (A:245-376) Regulatory subunit of Protein 2e-09
d1o7fa3124 b.82.3.2 (A:322-445) Regulatory domain of Epac2, d 6e-07
d1cx4a2147 b.82.3.2 (A:266-412) Regulatory subunit of Protein 7e-07
d1cx4a1136 b.82.3.2 (A:130-265) Regulatory subunit of Protein 7e-07
d1ne6a1136 b.82.3.2 (A:109-244) Regulatory subunit of Protein 1e-06
d1vp6a_133 b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizo 3e-06
>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 137 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Probable cyclic nucleotide-gated ion channel 6
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 75.4 bits (184), Expect = 7e-17
 Identities = 51/126 (40%), Positives = 82/126 (65%)

Query: 419 EVLKKVPMFQMMGKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNG 478
             +++VP+F+ M + +L  +C+ LKP L+ ++  +V+EGDP+ EM FI +G L + TT+G
Sbjct: 6   SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDG 65

Query: 479 GRNTSVFKKYLSTGDFWGEELATSALDPDPLSNIPHSNCALISVTNVEAFAINTDDLRAI 538
           GR+    +  L  GDF G+EL T ALDP   SN+P S   + ++T VEAFA+  D+L+ +
Sbjct: 66  GRSGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFV 125

Query: 539 VYQYWQ 544
             Q+ +
Sbjct: 126 ASQFRR 131
>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} Length = 193 Back     information, alignment and structure
>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 155 Back     information, alignment and structure
>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 132 Back     information, alignment and structure
>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 124 Back     information, alignment and structure
>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 147 Back     information, alignment and structure
>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 136 Back     information, alignment and structure
>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 136 Back     information, alignment and structure
>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} Length = 133 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query648
d1q3ea_193 HCN pacemaker channel {Mouse (Mus musculus) [TaxId 99.96
d1wgpa_137 Probable cyclic nucleotide-gated ion channel 6 {Th 99.79
d1ne6a2132 Regulatory subunit of Protein kinase A {Cow (Bos t 99.76
d1cx4a1136 Regulatory subunit of Protein kinase A {Rat (Rattu 99.72
d1cx4a2147 Regulatory subunit of Protein kinase A {Rat (Rattu 99.71
d1o7fa2155 Regulatory domain of Epac2, domains 1 and 3 {Mouse 99.69
d1o7fa3124 Regulatory domain of Epac2, domains 1 and 3 {Mouse 99.68
d1ne6a1136 Regulatory subunit of Protein kinase A {Cow (Bos t 99.67
d1vp6a_133 Putative ion channel CnbD {Mesorhizobium loti [Tax 99.67
d1zyba2147 Probable transcription regulator BT4300, N-termina 99.66
d2gaua2142 Transcriptional regulator PG0396, N-terminal domai 99.65
d1ft9a2132 CO-sensing protein CooA, N-terminal domain {Rhodos 99.61
d1i5za2132 Catabolite gene activator protein, N-terminal doma 99.6
d2oz6a2134 Cyclic AMP receptor-like protein Vfr {Pseudomonas 99.57
d1o5la1129 CRP-like transcriptional regulator TM1171, N-termi 99.52
d3e5ua2139 Chlorophenol reduction protein CprK {Desulfitobact 99.51
d1r3jc_103 Potassium channel protein {Streptomyces coelicolor 99.38
d2zcwa2112 Transcriptional regulator TTHA1359, N-terminal dom 99.35
d1xl4a2116 Inward rectifier potassium channel kirbac3.1 {Magn 99.3
d1p7ba2116 Inward rectifier potassium channel Kirbac1.1 {Burk 99.21
d1lnqa280 Potassium channel-related protein MthK {Archaeon M 98.89
d2h8pc157 Potassium channel protein {Streptomyces coelicolor 96.48
d1orsc_132 Potassium channel KVAP {Archaeon Aeropyrum pernix 95.19
d2bgca2131 Listeriolysin regulatory protein PrfA, N-terminal 89.91
d1yhfa1112 Hypothetical protein SPy1581 {Streptococcus pyogen 86.98
>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: HCN pacemaker channel
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=9e-29  Score=238.17  Aligned_cols=177  Identities=19%  Similarity=0.348  Sum_probs=163.2

Q ss_pred             cccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcCCCHHHHHhcccccchhhhHHHHHHHHhcCCcccccC
Q 006374          351 TIKLEEIKSKAREIEQWRTFEMLSQSLQQRVRNHQQYVWQEMRGIDVENLLNNLPVNLNWEMKSELCLEVLKKVPMFQMM  430 (648)
Q Consensus       351 ~~~~~~~~~~~~~i~~~m~~~~lp~~L~~rv~~y~~~~~~~~~~~~e~~ll~~Lp~~Lr~~i~~~~~~~~L~~i~~F~~l  430 (648)
                      |+...+|+++|+.+++||+.+++|++|+.||++||+|.|+. ++.+++++++.||+.|+.++..+++.++++++|+|+++
T Consensus         1 ds~~~~f~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~-~~~~~~~i~~~lp~~l~~~i~~~~~~~~l~~~~~F~~~   79 (193)
T d1q3ea_           1 DSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREEIVNFNCRKLVASMPLFANA   79 (193)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHSCHHHHHHHHHHHTHHHHHHCHHHHTS
T ss_pred             ChhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc-ccccHHHHHHHCCcchhHHHHHHHHHHHHhcchHHHhh
Confidence            45678999999999999999999999999999999999975 77899999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhcCeeEEecCCeEEEccCCCcCeEEEEEeeeEEEEEecCCeeeeEEEEecCCCCeEechhhhccCCCCCCC
Q 006374          431 GKSILSEMCKCLKPVLYVQECCIVKEGDPICEMFFITQGTLLTTTTNGGRNTSVFKKYLSTGDFWGEELATSALDPDPLS  510 (648)
Q Consensus       431 s~~~l~~L~~~l~~~~~~kge~I~~eGd~~~~lyfI~~G~v~v~~~~~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~  510 (648)
                      ++.++..|+..+++..|.||++|+++||+++++|||.+|.|.++..++ .     ...+++|++||+.+++.   +    
T Consensus        80 ~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~i~~G~v~v~~~~~-~-----~~~l~~G~~fGe~~~~~---~----  146 (193)
T d1q3ea_          80 DPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGN-K-----EMKLSDGSYFGEICLLT---R----  146 (193)
T ss_dssp             CHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEC-CC-C-----EEEECTTCEECHHHHHH---C----
T ss_pred             hHHHHHHHHHHHHHHhhccCceecccCCCCcceeEeeeeeEEeecCCc-c-----eeeeccceeeeeeeccC---C----
Confidence            999999999999999999999999999999999999999999987433 2     36789999999998852   1    


Q ss_pred             CCCCcceEEEEeceEEEEEEeHHHHHHHHHhch
Q 006374          511 NIPHSNCALISVTNVEAFAINTDDLRAIVYQYW  543 (648)
Q Consensus       511 ~~~~~~~tv~A~~~~~ll~Ls~~df~~ll~~~P  543 (648)
                        .+++++++|.++|+++.|++++|.++++++|
T Consensus       147 --~~~~~~~~a~~~~~l~~l~~~~f~~ll~~~p  177 (193)
T d1q3ea_         147 --GRRTASVRADTYCRLYSLSVDNFNEVLEEYP  177 (193)
T ss_dssp             --SBCSSEEEESSCEEEEEEEHHHHHHHHHHSG
T ss_pred             --CcccccceecCceEEEEEeHHHHHHHHHHCH
Confidence              2378999999999999999999999999995
>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} Back     information, alignment and structure
>d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]} Back     information, alignment and structure
>d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]} Back     information, alignment and structure
>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator TM1171, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]} Back     information, alignment and structure
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Back     information, alignment and structure
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Back     information, alignment and structure
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d2bgca2 b.82.3.3 (A:7-137) Listeriolysin regulatory protein PrfA, N-terminal domain {Bacteria (Listeria monocytogenes) [TaxId: 1639]} Back     information, alignment and structure
>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure