Citrus Sinensis ID: 006411
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 646 | 2.2.26 [Sep-21-2011] | |||||||
| Q6GX84 | 677 | Fidgetin-like protein 1 O | yes | no | 0.518 | 0.494 | 0.394 | 2e-76 | |
| Q8BPY9 | 683 | Fidgetin-like protein 1 O | yes | no | 0.521 | 0.493 | 0.390 | 2e-76 | |
| Q6PIW4 | 674 | Fidgetin-like protein 1 O | yes | no | 0.510 | 0.489 | 0.388 | 6e-75 | |
| A4IHT0 | 656 | Fidgetin-like protein 1 O | yes | no | 0.535 | 0.527 | 0.368 | 9e-74 | |
| Q6DDU8 | 655 | Fidgetin-like protein 1 O | N/A | no | 0.481 | 0.474 | 0.386 | 1e-72 | |
| Q60QD1 | 591 | Fidgetin-like protein 1 O | N/A | no | 0.362 | 0.395 | 0.400 | 5e-58 | |
| Q5ZK92 | 613 | Spastin OS=Gallus gallus | no | no | 0.366 | 0.386 | 0.388 | 5e-56 | |
| Q54KQ7 | 655 | Spastin OS=Dictyostelium | no | no | 0.373 | 0.367 | 0.366 | 2e-55 | |
| A2VDN5 | 614 | Spastin OS=Bos taurus GN= | no | no | 0.366 | 0.385 | 0.385 | 2e-55 | |
| B7PXE3 | 648 | Spastin OS=Ixodes scapula | N/A | no | 0.366 | 0.365 | 0.382 | 2e-54 |
| >sp|Q6GX84|FIGL1_RAT Fidgetin-like protein 1 OS=Rattus norvegicus GN=Fignl1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 287 bits (734), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 187/474 (39%), Positives = 246/474 (51%), Gaps = 139/474 (29%)
Query: 238 ISSPTNWISKSPSATENVNN--DVSANGFVTAKAKLERDVRQRRGLMGSSGASVSPQSDN 295
+S+PT ++K+PS TE+ D S F TAK +L D ++R S QS +
Sbjct: 271 LSNPT--LNKAPSKTEDSGQREDNSLPTFKTAKEQLWADQKKR-----------SHQSQH 317
Query: 296 -NPNIRGYGAKSYGISR-RGVRGSFVPPIRN--NGSNVGNMTSRISVYVLTIMFMSISHT 351
+ + G KS G R RG+ G FVPP+ N +GS
Sbjct: 318 TSKSFNGAIKKSLGAGRSRGIFGKFVPPVSNKQDGS------------------------ 353
Query: 352 HAHNYEHVQVLIPFSSFNYSLEMLCGPDGELPEKLRNLEPRLIEHVSNEIMDRDPHVRWD 411
E + P SS S E P ++L+N+EPR++E + NEIMD P V W+
Sbjct: 354 -----EQNGNVKPKSSRAGSAE----PAHLTDDRLKNVEPRMVELIMNEIMDHGPPVHWE 404
Query: 412 DIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP------------------ 453
DIAG+E AK + E+V+WP++RPDIF G R P KG+LLFGPP
Sbjct: 405 DIAGVEFAKATIKEIVVWPMMRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGAT 464
Query: 454 -------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLF 500
+GEGEK+VRALF VA C+QPAVIF+DEIDSLLSQ
Sbjct: 465 FFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQ------------- 511
Query: 501 CLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSE-QILLVGATNRPQELDEAARRRL 559
+ DGEHESSRR+KT+FL++++G + SE +IL+VGATNRPQE+DEAARRRL
Sbjct: 512 ---------RGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRL 562
Query: 560 TKRLYIPLP-------------------------------SSGYSGSDMKNLVKEASMGP 588
KRLYIPLP S G+SG+DM L +EAS+GP
Sbjct: 563 VKRLYIPLPEASARKQIVVNLMSKEQCCLTDEETELVVQQSDGFSGADMTQLCREASLGP 622
Query: 589 LREALRQGIEITRLQKEDMQPVTLQDFENALPQVRASVSLNELGIYEEWNKQFG 642
+R +I + + ++P+ DFENA VR SVS +L +YE WNK FG
Sbjct: 623 IRSL--HTADIATISPDQVRPIAYIDFENAFRTVRPSVSPKDLELYENWNKTFG 674
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May regulate osteoblast proliferation and differentiation. Rattus norvegicus (taxid: 10116) EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: - |
| >sp|Q8BPY9|FIGL1_MOUSE Fidgetin-like protein 1 OS=Mus musculus GN=Fignl1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 287 bits (734), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 184/471 (39%), Positives = 242/471 (51%), Gaps = 134/471 (28%)
Query: 238 ISSPTNWISKSPSATENVN--NDVSANGFVTAKAKLERDVRQRRGLMGSSGASVSPQSDN 295
+S+PT ++K+PS TE+ D S F TAK +L D +++ G S S+
Sbjct: 278 LSNPT--LNKAPSKTEDRGRREDNSLPTFKTAKEQLWVDQKKK----GHQSQHTSKSSN- 330
Query: 296 NPNIRGYGAKSYGISR-RGVRGSFVPPIRNNGSNVGNMTSRISVYVLTIMFMSISHTHAH 354
G KS G R RG+ G FVPP+ N S HA
Sbjct: 331 -----GVMKKSLGAGRSRGIFGKFVPPVSNKQDG--------------------SEQHAK 365
Query: 355 NYEHVQVLIPFSSFNYSLEMLCGPDGELPEKLRNLEPRLIEHVSNEIMDRDPHVRWDDIA 414
++ SS S E P + L+N+EPR++E + NEIMD P V WDDIA
Sbjct: 366 KHK--------SSRAGSAE----PAHLTDDCLKNVEPRMVELIMNEIMDHGPPVHWDDIA 413
Query: 415 GLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP--------------------- 453
G+E AK + E+V+WP++RPDIF G R P KG+LLFGPP
Sbjct: 414 GVEFAKATIKEIVVWPMMRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFS 473
Query: 454 ----------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLK 503
+GEGEK+VRALF VA C+QPAVIF+DEIDSLLSQ
Sbjct: 474 ISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQ---------------- 517
Query: 504 RFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSE-QILLVGATNRPQELDEAARRRLTKR 562
+ DGEHESSRR+KT+FL++++G + SE +IL+VGATNRPQE+DEAARRRL KR
Sbjct: 518 ------RGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKR 571
Query: 563 LYIPLP-------------------------------SSGYSGSDMKNLVKEASMGPLRE 591
LYIPLP S G+SG+DM L +EAS+GP+R
Sbjct: 572 LYIPLPEASARKQIVGNLMSKEQCCLSDEETDLVVQQSDGFSGADMTQLCREASLGPIRS 631
Query: 592 ALRQGIEITRLQKEDMQPVTLQDFENALPQVRASVSLNELGIYEEWNKQFG 642
+I + + ++P+ DFENA VR +VS +L +YE WN+ FG
Sbjct: 632 L--HAADIATISPDQVRPIAYIDFENAFKTVRPTVSPKDLELYENWNETFG 680
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May regulate osteoblast proliferation and differentiation. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: - |
| >sp|Q6PIW4|FIGL1_HUMAN Fidgetin-like protein 1 OS=Homo sapiens GN=FIGNL1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 282 bits (721), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 181/466 (38%), Positives = 238/466 (51%), Gaps = 136/466 (29%)
Query: 245 ISKSPSATEN--VNNDVSANGFVTAKAKLERDVRQRRGLMGSSGASVSPQSDNNPNIRGY 302
++K+ S TE+ D S F TAK +L D +++ PQ + + G
Sbjct: 274 LNKACSKTEDNGPKEDSSLPTFKTAKEQLWVDQQKKYH---------QPQRASGSSYGGV 324
Query: 303 GAKSYGISR-RGVRGSFVPPI--RNNGSNVGNMTSRISVYVLTIMFMSISHTHAHNYEHV 359
KS G SR RG+ G FVPPI ++ G G M +
Sbjct: 325 -KKSLGASRSRGILGKFVPPIPKQDGGEQNGGMQCK------------------------ 359
Query: 360 QVLIPFSSFNYSLEMLCGPDGELPEKLRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHA 419
P+ + P + E+L+NLEP++IE + NEIMD P V W+DIAG+E A
Sbjct: 360 ----PYGAGPTE------PAHPVDERLKNLEPKMIELIMNEIMDHGPPVNWEDIAGVEFA 409
Query: 420 KKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP-------------------------- 453
K + E+V+WP+LRPDIF G R P KG+LLFGPP
Sbjct: 410 KATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASS 469
Query: 454 -----IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQ 508
+GEGEK+VRALF VA C+QPAVIF+DEIDSLLSQ
Sbjct: 470 LTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQ--------------------- 508
Query: 509 RKSDGEHESSRRLKTQFLIEMEGFDSGSE-QILLVGATNRPQELDEAARRRLTKRLYIPL 567
+ DGEHESSRR+KT+FL++++G + SE +IL+VGATNRPQE+DEAARRRL KRLYIPL
Sbjct: 509 -RGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPL 567
Query: 568 P-------------------------------SSGYSGSDMKNLVKEASMGPLREALRQG 596
P S +SG+DM L +EAS+GP+R Q
Sbjct: 568 PEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSL--QT 625
Query: 597 IEITRLQKEDMQPVTLQDFENALPQVRASVSLNELGIYEEWNKQFG 642
+I + + ++P+ DFENA VR SVS +L +YE WNK FG
Sbjct: 626 ADIATITPDQVRPIAYIDFENAFRTVRPSVSPKDLELYENWNKTFG 671
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May regulate osteoblast proliferation and differentiation. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: - |
| >sp|A4IHT0|FIGL1_XENTR Fidgetin-like protein 1 OS=Xenopus tropicalis GN=fignl1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 278 bits (711), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 177/480 (36%), Positives = 250/480 (52%), Gaps = 134/480 (27%)
Query: 229 SGMKRAHVEISSPTNWISKSPSATENVNNDVSA--NGFVTAKAKLERDVRQRRGLMGSSG 286
SG ++A+ + + ++ I +P + N + +GF TAK +L D +++
Sbjct: 242 SGKRKAYSALGNESSDIKPNPLVQRQLTNKEATCESGFKTAKEQLWVDQQKKY------- 294
Query: 287 ASVSPQSDNNPNIRGYGAKSYGISR-RGVRGSFVPPIRNNGSNVGNMTSRISVYVLTIMF 345
S PQ + +P + G KS G +R RG+ G FVPP+ +V + ++
Sbjct: 295 -SNQPQRNPSP-LYGGAKKSLGAARSRGLHGKFVPPVPRQ-EDVQDSNRKV--------- 342
Query: 346 MSISHTHAHNYEHVQVLIPFSSFNYSLEMLCGPDGELPEKLRNLEPRLIEHVSNEIMDRD 405
+ N EM D E+L+N+EP++IE + +EIMD
Sbjct: 343 -------------------YGQGNS--EMNAPSD----ERLKNIEPKMIELIMSEIMDHG 377
Query: 406 PHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP------------ 453
P + WDDIAGLE AK + E+V+WP+LRPDIF G R P KG+LLFGPP
Sbjct: 378 PPLNWDDIAGLEFAKTTIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIA 437
Query: 454 -------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHV 494
+GEGEK+VRALF VA C QPAVIF+DEIDSLLSQ
Sbjct: 438 CQSGATFFSISASSLTSKWVGEGEKMVRALFTVARCHQPAVIFIDEIDSLLSQ------- 490
Query: 495 HHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGS-EQILLVGATNRPQELDE 553
+ +GEHESSRR+KT+FL++++G + S ++IL+VGATNRPQE+DE
Sbjct: 491 ---------------RGEGEHESSRRIKTEFLVQLDGATTSSDDRILVVGATNRPQEIDE 535
Query: 554 AARRRLTKRLYIPLP-------------------------------SSGYSGSDMKNLVK 582
AARRRL KRLYIPLP + G+SG+DM L +
Sbjct: 536 AARRRLVKRLYIPLPEASARKQIVVSLMAKEHCSLAEQEVEAIVLQADGFSGADMTQLCR 595
Query: 583 EASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRASVSLNELGIYEEWNKQFG 642
EA++GP+R Q ++I+ + E ++P+ DF++A VR SVS +L +YE WNK FG
Sbjct: 596 EAALGPIRSI--QLMDISTITPEQVRPIAYIDFQSAFLVVRPSVSQKDLELYENWNKTFG 653
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Xenopus tropicalis (taxid: 8364) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: - |
| >sp|Q6DDU8|FIGL1_XENLA Fidgetin-like protein 1 OS=Xenopus laevis GN=fignl1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 274 bits (701), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 171/443 (38%), Positives = 231/443 (52%), Gaps = 132/443 (29%)
Query: 264 FVTAKAKLERDVRQRRGLMGSSGASVSPQSDNNPNIRGYGAKSYGISR-RGVRGSFVPPI 322
F TAK +L D +++ S PQ + P + G G KS G +R RG+ G F+PP+
Sbjct: 278 FKTAKEQLWVDQQKKH--------SNQPQRNPGP-LYGGGKKSLGAARSRGLHGKFIPPL 328
Query: 323 RNNGSNVGNMTSRISVYVLTIMFMSISHTHAHNYEHVQVLIPFSSFNYSLEMLCGPDGEL 382
+V + ++ + N EM D
Sbjct: 329 PRQ-EDVEDSNRKV----------------------------YGQGNS--EMNSTSD--- 354
Query: 383 PEKLRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRS 442
E L+N+EP++IE + +EIMD P + WDDIAGLE AK + E+V+WP+LRPDIF G R
Sbjct: 355 -EHLKNIEPKMIELIMSEIMDHGPPLNWDDIAGLEFAKTTIKEIVVWPMLRPDIFTGLRG 413
Query: 443 PGKGLLLFGPP-------------------------------IGEGEKLVRALFGVASCR 471
P KG+LLFGPP +GEGEK+VRALF VA C
Sbjct: 414 PPKGILLFGPPGTGKTLIGKCIACQSGATFFSISASSLTSKWVGEGEKMVRALFTVARCH 473
Query: 472 QPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEG 531
QPAVIF+DEIDSLLSQ + +GEHESSRR+KT+FL++++G
Sbjct: 474 QPAVIFIDEIDSLLSQ----------------------RGEGEHESSRRIKTEFLVQLDG 511
Query: 532 FDSGSE-QILLVGATNRPQELDEAARRRLTKRLYIPLP---------------------- 568
+ SE +IL+VGATNRPQE+DEAARRRL KRLYIPLP
Sbjct: 512 ATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVVSLMSKEHCSLTE 571
Query: 569 ---------SSGYSGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENAL 619
+ G+SG+DM L +EA++GP+R Q ++I+ + E ++P+ DF++A
Sbjct: 572 QEVEAIVLQADGFSGADMTQLCREAALGPIRSI--QLMDISTITAEQVRPIAYIDFQSAF 629
Query: 620 PQVRASVSLNELGIYEEWNKQFG 642
VR SVS +L +YE WNK FG
Sbjct: 630 LVVRPSVSQKDLELYENWNKTFG 652
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Xenopus laevis (taxid: 8355) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: - |
| >sp|Q60QD1|FIGL1_CAEBR Fidgetin-like protein 1 OS=Caenorhabditis briggsae GN=figl-1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 226 bits (575), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 129/322 (40%), Positives = 177/322 (54%), Gaps = 88/322 (27%)
Query: 386 LRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGK 445
L++ + +I + +EIM + + W D+AGLE AKK + E+V+ P RPDIF G R+P K
Sbjct: 291 LKHFDENIISLIESEIMSVNNQIGWADVAGLEGAKKALKEIVVLPFQRPDIFTGLRAPPK 350
Query: 446 GLLLFGPP-------------------------------IGEGEKLVRALFGVASCRQPA 474
G+LLFGPP +GEGEKLVRALF VA + P+
Sbjct: 351 GVLLFGPPGTGKTMIGRCVASQAQATFFNISASSLTSKWVGEGEKLVRALFSVARLKLPS 410
Query: 475 VIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDS 534
VIF+DEIDSLLS +S+ EHESSRR+KT+FL++++G ++
Sbjct: 411 VIFIDEIDSLLSA----------------------RSESEHESSRRIKTEFLVQLDGVNT 448
Query: 535 G-SEQILLVGATNRPQELDEAARRRLTKRLYIPLP------------------------- 568
E++L++GATNRPQELDEAARRR KRLYI LP
Sbjct: 449 APDERLLVLGATNRPQELDEAARRRFQKRLYIALPEPDSRTQIVENLLRGTRHEITDHNL 508
Query: 569 ------SSGYSGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQV 622
+ GYSG+DM+ L EA+MGP+RE G +I + K+D++ VT+ DF A V
Sbjct: 509 EKIRRLTDGYSGADMRQLCTEAAMGPIREI---GDQIATINKDDIRAVTVADFTEAARVV 565
Query: 623 RASVSLNELGIYEEWNKQFGSL 644
R +V ++L Y W+K+FG L
Sbjct: 566 RPTVDDSQLDAYAAWDKKFGCL 587
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Has a role in spindle assembly which acts in the progression through mitosis during embryogenesis. Required for fertility. Caenorhabditis briggsae (taxid: 6238) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: - |
| >sp|Q5ZK92|SPAST_CHICK Spastin OS=Gallus gallus GN=SPAST PE=2 SV=1 | Back alignment and function description |
|---|
Score = 219 bits (558), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 126/324 (38%), Positives = 177/324 (54%), Gaps = 87/324 (26%)
Query: 386 LRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGK 445
RN++ L + NEI+D P V++DDIAG E AK+ + E+VI P LRP++F G R+P +
Sbjct: 314 FRNVDSNLANLILNEIVDSGPAVKFDDIAGQELAKQALQEIVILPSLRPELFTGLRAPAR 373
Query: 446 GLLLFGPP-------------------------------IGEGEKLVRALFGVASCRQPA 474
GLLLFGPP +GEGEKLVRALF VA QP+
Sbjct: 374 GLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPS 433
Query: 475 VIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGF-D 533
+IF+DE+DSLL C +R +GEH++SRRLKT+FLIE +G
Sbjct: 434 IIFIDEVDSLL---------------CERR-------EGEHDASRRLKTEFLIEFDGVQS 471
Query: 534 SGSEQILLVGATNRPQELDEAARRRLTKRLYIPLP------------------------- 568
SG ++IL++GATNRPQELD+A RR TKR+Y+ LP
Sbjct: 472 SGEDRILVMGATNRPQELDDAVLRRFTKRVYVSLPNEETRLILLKNLLSKQGSPLTQKEL 531
Query: 569 ------SSGYSGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQV 622
+ GYSGSD+ LVK+A++GP+RE + ++ + +M+ + L DF +L ++
Sbjct: 532 AQLARMTDGYSGSDLTALVKDAALGPIRELKPE--QVKNMSASEMRNIKLSDFTESLKKI 589
Query: 623 RASVSLNELGIYEEWNKQFGSLSL 646
+ S+S L Y WNK FG ++
Sbjct: 590 KRSLSPQTLEAYIRWNKDFGDTTV 613
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ATP-dependent microtubule severing protein. Microtubule severing may promote reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Required for membrane traffic from the endoplasmic reticulum (ER) to the Golgi and for completion of the abscission stage of cytokinesis. Also plays a role in axon growth and the formation of axonal branches. Gallus gallus (taxid: 9031) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 3 |
| >sp|Q54KQ7|SPAST_DICDI Spastin OS=Dictyostelium discoideum GN=DDB_G0287165 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 217 bits (553), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 121/330 (36%), Positives = 181/330 (54%), Gaps = 89/330 (26%)
Query: 378 PDGELPEKLRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIF 437
P +P+ ++ ++ ++ + NEIMDR V+WDD+ GL+ K+ +ME VI P LRPD+F
Sbjct: 352 PSMVIPD-IKGIDKSMVTLIMNEIMDRKNPVKWDDVVGLDKVKQSLMESVILPNLRPDVF 410
Query: 438 KGCRSPGKGLLLFGPP-------------------------------IGEGEKLVRALFG 466
G R+P KGLLLFGPP +G+GEKLVRALF
Sbjct: 411 TGLRAPPKGLLLFGPPGNGKTMIAKAVAYESKVTFFSISSSSLTSKYVGDGEKLVRALFA 470
Query: 467 VASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFL 526
VA+ QP++IF+DEIDSLL++ +S E E+SRRLKT+ L
Sbjct: 471 VATHFQPSIIFIDEIDSLLTE----------------------RSSNESEASRRLKTEIL 508
Query: 527 IEMEGF-DSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLP----------------- 568
++ +G +G E++L++GATNRP++LD+AA RRL KR+Y+ LP
Sbjct: 509 VQFDGARTNGDERVLVMGATNRPEDLDDAALRRLVKRIYVGLPELETRLQIIQHLLVGQR 568
Query: 569 --------------SSGYSGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQD 614
+ GYSG D+ L K+A+ P+R R GI I L+ ++ ++ +D
Sbjct: 569 HSLTKQQINSLAEVTQGYSGFDLAALCKDAAYEPIR---RLGIGIKDLELNEISLISFKD 625
Query: 615 FENALPQVRASVSLNELGIYEEWNKQFGSL 644
F N+L Q+R SV+ L +E+WN++FG++
Sbjct: 626 FANSLKQIRPSVTSQSLKSFEKWNQKFGTI 655
|
ATP-dependent microtubule severing protein. Microtubule severing may promote reorganization of cellular microtubule arrays and the release of microtubules from the microtubule organizing center following nucleation. Dictyostelium discoideum (taxid: 44689) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 3 |
| >sp|A2VDN5|SPAST_BOVIN Spastin OS=Bos taurus GN=SPAST PE=2 SV=1 | Back alignment and function description |
|---|
Score = 217 bits (553), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 125/324 (38%), Positives = 176/324 (54%), Gaps = 87/324 (26%)
Query: 386 LRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGK 445
RN++ L + NEI+D V++DDIAG E AK+ + E+VI P LRP++F G R+P +
Sbjct: 315 FRNVDSNLANLIMNEIVDNGTAVKFDDIAGQELAKQALQEIVILPSLRPELFTGLRAPAR 374
Query: 446 GLLLFGPP-------------------------------IGEGEKLVRALFGVASCRQPA 474
GLLLFGPP +GEGEKLVRALF VA QP+
Sbjct: 375 GLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPS 434
Query: 475 VIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDS 534
+IF+DE+DSLL C +R +GEH++SRRLKT+FLIE +G S
Sbjct: 435 IIFIDEVDSLL---------------CERR-------EGEHDASRRLKTEFLIEFDGVQS 472
Query: 535 -GSEQILLVGATNRPQELDEAARRRLTKRLYIPLP------------------------- 568
G +++L++GATNRPQELDEA RR TKR+Y+ LP
Sbjct: 473 AGDDRVLVMGATNRPQELDEAVLRRFTKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKEL 532
Query: 569 ------SSGYSGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQV 622
++GYSGSD+ L K+A++GP+RE + ++ + +M+ + L DF +L ++
Sbjct: 533 AQLARMTNGYSGSDLTALAKDAALGPIRELKPE--QVKNMSASEMRNIRLSDFTESLKKI 590
Query: 623 RASVSLNELGIYEEWNKQFGSLSL 646
+ SVS L Y WNK FG ++
Sbjct: 591 KRSVSPQTLEAYIRWNKDFGDTTV 614
|
ATP-dependent microtubule severing protein. Microtubule severing may promote reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Required for membrane traffic from the endoplasmic reticulum (ER) to the Golgi and for completion of the abscission stage of cytokinesis. Also plays a role in axon growth and the formation of axonal branches. Bos taurus (taxid: 9913) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 3 |
| >sp|B7PXE3|SPAST_IXOSC Spastin OS=Ixodes scapularis GN=spas PE=3 SV=1 | Back alignment and function description |
|---|
Score = 214 bits (545), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 124/324 (38%), Positives = 180/324 (55%), Gaps = 87/324 (26%)
Query: 386 LRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGK 445
L+ ++ RL + +E++D P V + DIAG E AK+ + EMVI P RP++F G R+P K
Sbjct: 349 LKGVDSRLAHLILDEVVDGAPPVLFSDIAGQEVAKQALSEMVILPTDRPELFTGLRAPPK 408
Query: 446 GLLLFGPP-------------------------------IGEGEKLVRALFGVASCRQPA 474
GLLLFGPP +GEGEKLVRALF VA QP+
Sbjct: 409 GLLLFGPPGNGKTMLAKAVAHESNSTFLNISAASLTSKYVGEGEKLVRALFAVARELQPS 468
Query: 475 VIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDS 534
+IF+DE+DSLLS+ + D EHE++RRLKT+FL+E +G +
Sbjct: 469 IIFIDEVDSLLSE----------------------RKDNEHEATRRLKTEFLVEFDGLHT 506
Query: 535 GSEQ-ILLVGATNRPQELDEAARRRLTKRLYIPLP------------------------- 568
GSE+ +L++GATNRPQELD+AA RR TKR+Y+ LP
Sbjct: 507 GSEERVLVMGATNRPQELDDAALRRFTKRVYVTLPDHNTRVILLEKLLKKHNNPLSADKL 566
Query: 569 ------SSGYSGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQV 622
+ GYSGSD+ L K+A++GP+RE + + +K M+ ++LQDF ++L +V
Sbjct: 567 KYLARLTEGYSGSDLTALAKDAALGPIRELNPEQVRCVDPKK--MRNISLQDFLDSLKKV 624
Query: 623 RASVSLNELGIYEEWNKQFGSLSL 646
R SV+ L ++ WN++FG +++
Sbjct: 625 RRSVTPQSLDFFDRWNREFGDITV 648
|
ATP-dependent microtubule severing protein. Microtubule severing may promote reorganization of cellular microtubule arrays and the release of microtubules from the microtubule organizing center following nucleation. Ixodes scapularis (taxid: 6945) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 646 | ||||||
| 255536917 | 660 | ATP binding protein, putative [Ricinus c | 0.908 | 0.889 | 0.614 | 0.0 | |
| 296082353 | 653 | unnamed protein product [Vitis vinifera] | 0.905 | 0.895 | 0.623 | 0.0 | |
| 359488497 | 668 | PREDICTED: fidgetin-like protein 1-like | 0.905 | 0.875 | 0.623 | 0.0 | |
| 356511805 | 659 | PREDICTED: fidgetin-like protein 1-like | 0.911 | 0.893 | 0.566 | 0.0 | |
| 356571361 | 659 | PREDICTED: fidgetin-like protein 1-like | 0.911 | 0.893 | 0.564 | 0.0 | |
| 449441690 | 677 | PREDICTED: fidgetin-like protein 1-like | 0.921 | 0.878 | 0.568 | 0.0 | |
| 9279636 | 694 | unnamed protein product [Arabidopsis tha | 0.879 | 0.818 | 0.559 | 0.0 | |
| 297818272 | 660 | hypothetical protein ARALYDRAFT_347079 [ | 0.859 | 0.840 | 0.540 | 0.0 | |
| 357153631 | 687 | PREDICTED: fidgetin-like protein 1-like | 0.905 | 0.851 | 0.518 | 1e-175 | |
| 326504030 | 681 | predicted protein [Hordeum vulgare subsp | 0.933 | 0.885 | 0.502 | 1e-173 |
| >gi|255536917|ref|XP_002509525.1| ATP binding protein, putative [Ricinus communis] gi|223549424|gb|EEF50912.1| ATP binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 812 bits (2097), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/693 (61%), Positives = 493/693 (71%), Gaps = 106/693 (15%)
Query: 17 WRKQVDDNLKRLHSLKFGADYFLDKRDFSSVRLLSLRLLGFLDSHTQSETDEILTRPIRR 76
WRKQV++NLKRLHSL+FG D L++RDFS+ +L LRLLGF+DSH+ ++ DE LTRPIRR
Sbjct: 11 WRKQVNENLKRLHSLQFGVDLALERRDFSAAHILGLRLLGFIDSHSLTDVDEALTRPIRR 70
Query: 77 EAVAKLDEARRALVPDSDRRAFEQAGRAPGCAFSLKGGIDVEKIKQSKYFRANLQQYNEQ 136
+AV KLD AR++L+PDSDRRAFEQAGRAPGC FS KG ID+E++KQSKY R LQQY+ +
Sbjct: 71 DAVTKLDSARQSLIPDSDRRAFEQAGRAPGCVFSRKGDIDIERVKQSKYLRGLLQQYDIR 130
Query: 137 ATSELGGRLDRQGKLFSNQSKVMTQEKLASLYGNNIMKTNTGSFRSMLNSKSNGSEDCVI 196
S +G +LD + K SKV+TQ +L SLYG+N K N GS + L SK N S+DC I
Sbjct: 131 PLSGMGDQLDIKKKSSCKMSKVITQARLTSLYGSNFTKGNPGSHKISLTSKDNISDDCTI 190
Query: 197 VEKSSLFSNLPKGHNVSKFVKVEEEERGYTNSSGMKRAHVEISSPTNWISKSPSATENVN 256
VE + K H +S ++K EEEERG+ ++ G KR+H EI SP + I+KSP+ E N
Sbjct: 191 VESIHSYHTHSKNHGLSTYMKNEEEERGFGSTLGSKRSHEEIRSPKSDIAKSPTNNEEAN 250
Query: 257 NDVSANGFVTAKAKLERDVRQRRGLMGSSGASVSPQSDNNPNIRGYGAKSYGISRRGVRG 316
DVS NGFVTA+AKLE D RQ+RGLMGS ASVSPQ D++ R YGA+SYG SRRG+RG
Sbjct: 251 TDVSGNGFVTARAKLEMDARQKRGLMGSPSASVSPQGDSSN--RNYGARSYGFSRRGIRG 308
Query: 317 SFVPPIRNNGSNVGNMTSRISVYVLTIMFMSISHTHAHNYEHVQVLIPFSSFNYSLEMLC 376
+FVPPI++NG + NMT+R+ + + S LEMLC
Sbjct: 309 NFVPPIKSNGGSTANMTARVG---------------GKGDDALD-----DSTRRCLEMLC 348
Query: 377 GPDGELPEKLRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDI 436
GPDGELPEKLRNLEPRL+EHVSNEIMDRDP+VRWDDIAGLEHAKKCV EMVIWPLLRPDI
Sbjct: 349 GPDGELPEKLRNLEPRLLEHVSNEIMDRDPNVRWDDIAGLEHAKKCVTEMVIWPLLRPDI 408
Query: 437 FKGCRSPGKGLLLFGPP-------------------------------IGEGEKLVRALF 465
FKGCRSPG+GLLLFGPP IGEGEKLVRALF
Sbjct: 409 FKGCRSPGRGLLLFGPPGTGKTMIGKAIAGEAKATFFYISASSLTSKWIGEGEKLVRALF 468
Query: 466 GVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQF 525
GVASCRQPAVIFVDEIDSLLS QRKS+GEHESSRRLKTQF
Sbjct: 469 GVASCRQPAVIFVDEIDSLLS---------------------QRKSEGEHESSRRLKTQF 507
Query: 526 LIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS--------------- 570
LIEMEGFDSGSEQILL+GATNRPQELDEAARRRLTKRLYIPLPSS
Sbjct: 508 LIEMEGFDSGSEQILLIGATNRPQELDEAARRRLTKRLYIPLPSSEARAWIVRNLLEKDG 567
Query: 571 -----------------GYSGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQ 613
GYSGSDMKNLVK+ASMGPLREAL+QGIEIT+L+KEDM+PVT+Q
Sbjct: 568 LLELSNFEIDSICKLTEGYSGSDMKNLVKDASMGPLREALKQGIEITKLRKEDMRPVTVQ 627
Query: 614 DFENALPQVRASVSLNELGIYEEWNKQFGSLSL 646
DFE AL +VR SVSL+ELGIY+EWNKQFGSLSL
Sbjct: 628 DFEMALQEVRPSVSLSELGIYDEWNKQFGSLSL 660
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296082353|emb|CBI21358.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 806 bits (2081), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/694 (62%), Positives = 487/694 (70%), Gaps = 109/694 (15%)
Query: 16 CWRKQVDDNLKRLHSLKFGADYFLDKRDFSSVRLLSLRLLGFLDSHTQSETDEILTRPIR 75
CWRKQVD NLKRLHSL FG+D L + DFSS ++L L L+GFLDSH+ S+ DE RPIR
Sbjct: 6 CWRKQVDQNLKRLHSLLFGSDLALHEGDFSSAQVLGLSLIGFLDSHSHSDVDEAFIRPIR 65
Query: 76 REAVAKLDEARRALVPDSDRRAFEQAGRAPGCAFSLKGGIDVEKIKQSKYFRANLQQYNE 135
+ +K+ +ARR+L+PDSDR+AFEQAGR PG F ++G ID+EKIKQSKYFRA LQQ
Sbjct: 66 SQVYSKIHQARRSLIPDSDRQAFEQAGRVPGRVFGMRGDIDIEKIKQSKYFRALLQQSKG 125
Query: 136 QATSELGGRLDRQGKLFSNQSKVMTQEKLASLYGNNIMKTNTGSFRSMLNSKSNGSEDCV 195
A +EL +L RQ +L SKV+TQ KL SLYGN+ S++S ++SKSN SEDCV
Sbjct: 126 GAANELVDQLGRQDQLSFKASKVLTQSKLISLYGND-----KSSYKSSMHSKSNSSEDCV 180
Query: 196 IVEKSSLFSNLPKGHNVSKFVKVEEEERGYTNSSGMKRAHVEISSPTNWISKSPSATENV 255
IVEK+ + + PKG S F+KVEEEER + N G KR H+EISSP N I+KSPS+ E
Sbjct: 181 IVEKAHSYHSHPKGQGASAFLKVEEEERAHGNGLGTKRGHMEISSPGNDIAKSPSSNEET 240
Query: 256 NNDVSANGFVTAKAKLERDVRQRRGLMGSSGASVSPQSDNNPNIRGYGAKSYGISRRGVR 315
ND GFVTA+AKLE D RQRRG GS ASVSPQSDNN RGYGAKSYG RRG+R
Sbjct: 241 QNDGFGKGFVTARAKLEMDARQRRGSAGSPSASVSPQSDNNFTSRGYGAKSYGFPRRGIR 300
Query: 316 GSFVPPIRNNGSNVGNMTSRISVYVLTIMFMSISHTHAHNYEHVQVLIPFSSFNYSLEML 375
G+FVPPIR+NG N NMTS+I+ + S LEML
Sbjct: 301 GNFVPPIRSNGGNASNMTSQIAGKGDDALDDSTKRC--------------------LEML 340
Query: 376 CGPDGELPEKLRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPD 435
GPDGE+PEKLRNLEPRLIEHVSNEIMDRDP+VRWDDIAGLEHAKKCV EMVIWPLLRPD
Sbjct: 341 YGPDGEVPEKLRNLEPRLIEHVSNEIMDRDPNVRWDDIAGLEHAKKCVTEMVIWPLLRPD 400
Query: 436 IFKGCRSPGKGLLLFGPP-------------------------------IGEGEKLVRAL 464
IFKGCRSPG+GLLLFGPP IGEGEKLVRAL
Sbjct: 401 IFKGCRSPGRGLLLFGPPGTGKTMIGKAIAGEAKATFFYISASSLTSKWIGEGEKLVRAL 460
Query: 465 FGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQ 524
FGVASCRQPAVIFVDEIDSLLS QRKS+GEHESSRRLKTQ
Sbjct: 461 FGVASCRQPAVIFVDEIDSLLS---------------------QRKSEGEHESSRRLKTQ 499
Query: 525 FLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS-------------- 570
FLIEMEGFDSGSEQILL+GATNRPQELDEAARRRLTKRLYIPLPSS
Sbjct: 500 FLIEMEGFDSGSEQILLIGATNRPQELDEAARRRLTKRLYIPLPSSEARAWIIRNLLEKD 559
Query: 571 ------------------GYSGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTL 612
GYSGSDMKNLVK+ASMGPLREALRQGIEIT+L+KEDM+PVTL
Sbjct: 560 GLFKLSKEHIDTICKLTEGYSGSDMKNLVKDASMGPLREALRQGIEITKLKKEDMRPVTL 619
Query: 613 QDFENALPQVRASVSLNELGIYEEWNKQFGSLSL 646
QDFE+AL +VR SVSLNELG Y++WNKQFGSLSL
Sbjct: 620 QDFESALQEVRPSVSLNELGTYDDWNKQFGSLSL 653
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359488497|ref|XP_003633767.1| PREDICTED: fidgetin-like protein 1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 805 bits (2079), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/694 (62%), Positives = 487/694 (70%), Gaps = 109/694 (15%)
Query: 16 CWRKQVDDNLKRLHSLKFGADYFLDKRDFSSVRLLSLRLLGFLDSHTQSETDEILTRPIR 75
CWRKQVD NLKRLHSL FG+D L + DFSS ++L L L+GFLDSH+ S+ DE RPIR
Sbjct: 21 CWRKQVDQNLKRLHSLLFGSDLALHEGDFSSAQVLGLSLIGFLDSHSHSDVDEAFIRPIR 80
Query: 76 REAVAKLDEARRALVPDSDRRAFEQAGRAPGCAFSLKGGIDVEKIKQSKYFRANLQQYNE 135
+ +K+ +ARR+L+PDSDR+AFEQAGR PG F ++G ID+EKIKQSKYFRA LQQ
Sbjct: 81 SQVYSKIHQARRSLIPDSDRQAFEQAGRVPGRVFGMRGDIDIEKIKQSKYFRALLQQSKG 140
Query: 136 QATSELGGRLDRQGKLFSNQSKVMTQEKLASLYGNNIMKTNTGSFRSMLNSKSNGSEDCV 195
A +EL +L RQ +L SKV+TQ KL SLYGN+ S++S ++SKSN SEDCV
Sbjct: 141 GAANELVDQLGRQDQLSFKASKVLTQSKLISLYGND-----KSSYKSSMHSKSNSSEDCV 195
Query: 196 IVEKSSLFSNLPKGHNVSKFVKVEEEERGYTNSSGMKRAHVEISSPTNWISKSPSATENV 255
IVEK+ + + PKG S F+KVEEEER + N G KR H+EISSP N I+KSPS+ E
Sbjct: 196 IVEKAHSYHSHPKGQGASAFLKVEEEERAHGNGLGTKRGHMEISSPGNDIAKSPSSNEET 255
Query: 256 NNDVSANGFVTAKAKLERDVRQRRGLMGSSGASVSPQSDNNPNIRGYGAKSYGISRRGVR 315
ND GFVTA+AKLE D RQRRG GS ASVSPQSDNN RGYGAKSYG RRG+R
Sbjct: 256 QNDGFGKGFVTARAKLEMDARQRRGSAGSPSASVSPQSDNNFTSRGYGAKSYGFPRRGIR 315
Query: 316 GSFVPPIRNNGSNVGNMTSRISVYVLTIMFMSISHTHAHNYEHVQVLIPFSSFNYSLEML 375
G+FVPPIR+NG N NMTS+I+ + S LEML
Sbjct: 316 GNFVPPIRSNGGNASNMTSQIAGKGDDALDDSTKRC--------------------LEML 355
Query: 376 CGPDGELPEKLRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPD 435
GPDGE+PEKLRNLEPRLIEHVSNEIMDRDP+VRWDDIAGLEHAKKCV EMVIWPLLRPD
Sbjct: 356 YGPDGEVPEKLRNLEPRLIEHVSNEIMDRDPNVRWDDIAGLEHAKKCVTEMVIWPLLRPD 415
Query: 436 IFKGCRSPGKGLLLFGPP-------------------------------IGEGEKLVRAL 464
IFKGCRSPG+GLLLFGPP IGEGEKLVRAL
Sbjct: 416 IFKGCRSPGRGLLLFGPPGTGKTMIGKAIAGEAKATFFYISASSLTSKWIGEGEKLVRAL 475
Query: 465 FGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQ 524
FGVASCRQPAVIFVDEIDSLLS QRKS+GEHESSRRLKTQ
Sbjct: 476 FGVASCRQPAVIFVDEIDSLLS---------------------QRKSEGEHESSRRLKTQ 514
Query: 525 FLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS-------------- 570
FLIEMEGFDSGSEQILL+GATNRPQELDEAARRRLTKRLYIPLPSS
Sbjct: 515 FLIEMEGFDSGSEQILLIGATNRPQELDEAARRRLTKRLYIPLPSSEARAWIIRNLLEKD 574
Query: 571 ------------------GYSGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTL 612
GYSGSDMKNLVK+ASMGPLREALRQGIEIT+L+KEDM+PVTL
Sbjct: 575 GLFKLSKEHIDTICKLTEGYSGSDMKNLVKDASMGPLREALRQGIEITKLKKEDMRPVTL 634
Query: 613 QDFENALPQVRASVSLNELGIYEEWNKQFGSLSL 646
QDFE+AL +VR SVSLNELG Y++WNKQFGSLSL
Sbjct: 635 QDFESALQEVRPSVSLNELGTYDDWNKQFGSLSL 668
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356511805|ref|XP_003524613.1| PREDICTED: fidgetin-like protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 740 bits (1911), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/694 (56%), Positives = 470/694 (67%), Gaps = 105/694 (15%)
Query: 16 CWRKQVDDNLKRLHSLKFGADYFLDKRDFSSVRLLSLRLLGFLDSHTQSETDEILTRPIR 75
CWR +V++ LKRL SL FGA+ L+ DFSS +L+LRLLGFLD ++ S DE +PIR
Sbjct: 8 CWRMEVEEKLKRLQSLLFGAERALENNDFSSAYILALRLLGFLDVNSHSNVDEAFVQPIR 67
Query: 76 REAVAKLDEARRALVPDSDRRAFEQAGRAPGCAFSLKGGIDVEKIKQSKYFRANLQQYNE 135
R+A+AKL AR++L P SDR+AFEQA ++PG F G ID+EKI+ SKYF+A ++Q E
Sbjct: 68 RDALAKLHFARQSLTPQSDRQAFEQAKKSPGRIFGTTGDIDIEKIRNSKYFQALVKQSKE 127
Query: 136 QATSELGGRLDRQGKLFSNQSKVMTQEKLASLYGNNIMKTNTGSFRSMLNSKSNGSEDCV 195
+ ++L L +Q K S SK M Q KL S+YG ++T+ GS +S+ N K+N SEDC+
Sbjct: 128 KDENQLVDHLGKQDKAGSKASKQMVQTKLPSMYGKRSLRTSNGS-KSIFNMKNNSSEDCM 186
Query: 196 IVEKSSLFSNLPKGHNVSKFVKVEEEERGYTNSSGMKRAHVEISSPTNWISKSPSATENV 255
+++ ++ KG S ++VE EER + N+ KR H+E +SP KSPS+ E+V
Sbjct: 187 SLDRPQSHASHTKGPGFSSILQVEGEERAFGNTFSTKRVHMENNSPRVGFVKSPSSKEDV 246
Query: 256 NNDVSANGFVTAKAKLERDVRQRRGLMGSSGASVSPQSDNNPNIRGYGAKSYGISRRGVR 315
N D NGFVTA+AKLE + +Q+RG+ GS ASVSPQ DNN R YG +SYG+ RRGVR
Sbjct: 247 NPDACGNGFVTARAKLEMEAKQKRGVGGSPSASVSPQCDNNSANRLYGGRSYGVPRRGVR 306
Query: 316 GSFVPPIRNNGSNVGNMTSRISVYVLTIMFMSISHTHAHNYEHVQVLIPFSSFNYSLEML 375
G+FVPPI++NG+N GN ++RI+ + S LE+L
Sbjct: 307 GNFVPPIKSNGNNAGNTSTRIAGKCDDSLDDSTKKC--------------------LEIL 346
Query: 376 CGPDGELPEKLRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPD 435
CGPDGELPEKLRNL+PRLIEHVSNEIMDRDP+VRWDDIAGLEHAKKCV EMV++PL RPD
Sbjct: 347 CGPDGELPEKLRNLDPRLIEHVSNEIMDRDPNVRWDDIAGLEHAKKCVNEMVVYPLQRPD 406
Query: 436 IFKGCRSPGKGLLLFGPP-------------------------------IGEGEKLVRAL 464
IF GCRSPG+GLLLFGPP IGEGEKLVRAL
Sbjct: 407 IFMGCRSPGRGLLLFGPPGTGKTMIGKAIAGEAKATFFYISASSLTSKWIGEGEKLVRAL 466
Query: 465 FGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQ 524
FGVASCRQPAVIFVDEIDSLLSQ RKSDGEHESSRRLKTQ
Sbjct: 467 FGVASCRQPAVIFVDEIDSLLSQ---------------------RKSDGEHESSRRLKTQ 505
Query: 525 FLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS-------------- 570
FLIEMEGFDSGSEQILL+GATNRPQELDEAARRRLTKRLYIPLP S
Sbjct: 506 FLIEMEGFDSGSEQILLIGATNRPQELDEAARRRLTKRLYIPLPCSEARAWIIRNLLEKD 565
Query: 571 ------------------GYSGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTL 612
GYSGSDMKNLVK+ASMGPLREAL QGIEIT+L+KEDM+PVTL
Sbjct: 566 GLFKLSCDEMDIICKFTEGYSGSDMKNLVKDASMGPLREALSQGIEITKLKKEDMRPVTL 625
Query: 613 QDFENALPQVRASVSLNELGIYEEWNKQFGSLSL 646
QDF+N+L +VR SVS NELG YE+WNKQFGSLSL
Sbjct: 626 QDFKNSLQEVRPSVSTNELGTYEQWNKQFGSLSL 659
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356571361|ref|XP_003553846.1| PREDICTED: fidgetin-like protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 736 bits (1900), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/694 (56%), Positives = 472/694 (68%), Gaps = 105/694 (15%)
Query: 16 CWRKQVDDNLKRLHSLKFGADYFLDKRDFSSVRLLSLRLLGFLDSHTQSETDEILTRPIR 75
CWR +V++ LKRL SL FGA+ L+ DFSS +L+LRLLGFLD+++ S+ DE +PIR
Sbjct: 8 CWRMEVEEKLKRLQSLLFGAERALENNDFSSAYVLALRLLGFLDANSHSDVDEAFVQPIR 67
Query: 76 REAVAKLDEARRALVPDSDRRAFEQAGRAPGCAFSLKGGIDVEKIKQSKYFRANLQQYNE 135
R+A+AKL AR++L P SDR+AFEQA ++PG F G ID+EKI+ SKYF+A ++Q E
Sbjct: 68 RDALAKLHFARQSLAPQSDRQAFEQAKKSPGRIFGTTGDIDIEKIQNSKYFQALVKQSKE 127
Query: 136 QATSELGGRLDRQGKLFSNQSKVMTQEKLASLYGNNIMKTNTGSFRSMLNSKSNGSEDCV 195
+ ++ L +Q K S SK M Q KL S+YG + ++T+ G +S LN K+N SEDC+
Sbjct: 128 KDENQPVDHLGKQDKAGSKASKQMVQTKLPSMYGKSSLRTSNGP-KSFLNMKNNSSEDCM 186
Query: 196 IVEKSSLFSNLPKGHNVSKFVKVEEEERGYTNSSGMKRAHVEISSPTNWISKSPSATENV 255
I+++ ++ KG S ++VE EER + ++ KR H+E + P KSPS+ E+V
Sbjct: 187 ILDRPQSHASHIKGPGFSSILQVEGEERAFGSTFSAKRVHMENNCPRVGFVKSPSSKEDV 246
Query: 256 NNDVSANGFVTAKAKLERDVRQRRGLMGSSGASVSPQSDNNPNIRGYGAKSYGISRRGVR 315
N D NGFVTA+AKLE + +Q+RG+ GS ASVSPQ DNN R YG +SYG+SRRGVR
Sbjct: 247 NPDACGNGFVTARAKLEMEAKQKRGVGGSPSASVSPQCDNNSANRLYGGRSYGVSRRGVR 306
Query: 316 GSFVPPIRNNGSNVGNMTSRISVYVLTIMFMSISHTHAHNYEHVQVLIPFSSFNYSLEML 375
G+FVPPI++NG+N GNM++R++ + S LE+L
Sbjct: 307 GNFVPPIKSNGNNAGNMSARVAGKCDDSLDDSTKKC--------------------LEIL 346
Query: 376 CGPDGELPEKLRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPD 435
CGPDGELPEKLRNLEPRLIEHVSNEIMDRDP+VRWDDIAGLEHAKKCV EMV++PL RPD
Sbjct: 347 CGPDGELPEKLRNLEPRLIEHVSNEIMDRDPNVRWDDIAGLEHAKKCVNEMVVYPLQRPD 406
Query: 436 IFKGCRSPGKGLLLFGPP-------------------------------IGEGEKLVRAL 464
IF GCRSPG+GLLLFGPP IGEGEKLVRAL
Sbjct: 407 IFMGCRSPGRGLLLFGPPGTGKTMIGKAIAGEAKATFFYISASSLTSKWIGEGEKLVRAL 466
Query: 465 FGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQ 524
FGVASCRQPAVIFVDEIDSLLSQ RKSDGEHESSRRLKTQ
Sbjct: 467 FGVASCRQPAVIFVDEIDSLLSQ---------------------RKSDGEHESSRRLKTQ 505
Query: 525 FLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS-------------- 570
FLIEMEGFDSGSEQILL+GATNRPQELDEAARRRLTKRLYIPLP S
Sbjct: 506 FLIEMEGFDSGSEQILLIGATNRPQELDEAARRRLTKRLYIPLPCSEARAWITRNLLEKD 565
Query: 571 ------------------GYSGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTL 612
GYSGSDMKNLVK+ASMGPLREAL QGIEIT+L+KEDM+PVTL
Sbjct: 566 GLFKLSSEEMDIICKLTEGYSGSDMKNLVKDASMGPLREALGQGIEITKLKKEDMRPVTL 625
Query: 613 QDFENALPQVRASVSLNELGIYEEWNKQFGSLSL 646
QDF+N+L +VR SVS NEL YE+WNKQFGSLSL
Sbjct: 626 QDFKNSLQEVRPSVSPNELVTYEQWNKQFGSLSL 659
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449441690|ref|XP_004138615.1| PREDICTED: fidgetin-like protein 1-like [Cucumis sativus] gi|449528905|ref|XP_004171442.1| PREDICTED: fidgetin-like protein 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 715 bits (1846), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/705 (56%), Positives = 474/705 (67%), Gaps = 110/705 (15%)
Query: 8 GEVPKTTSCWRKQVDDNLKRLHSLKFGADYFLDKRDFSSVRLLSLRLLGFLDSHTQSETD 67
G P+ CWRKQVD NLKRL SL FGAD+ L+K D+S+ +LL LRLLGFLDSHT ++ D
Sbjct: 17 GSQPEEEICWRKQVDQNLKRLQSLLFGADFALEKADYSAAQLLGLRLLGFLDSHTHTDLD 76
Query: 68 EILTRPIRREAVAKLDEARRALVPDSDRRAFEQAGRAPGCAFSLKGGIDVEKIKQSKYFR 127
+ +PIRREA+ K+ ARR+L+P+SDR+ FEQA APGC FS+ +D KI QSKYF+
Sbjct: 77 QAFIQPIRREALEKIHVARRSLMPESDRQVFEQARTAPGCVFSMSKDVDFSKITQSKYFQ 136
Query: 128 ANLQQYNEQATSELGGRLDRQGKLFSNQSKVMTQEKLAS-LYGNNIMKTNTGSFRSMLNS 186
A LQ N + +EL +L R KL ++ ++ + K+ S LY + +T+ +RS LNS
Sbjct: 137 A-LQHSNGRIINELD-QLARVNKLSTDAPEITAEAKVTSPLYKKDHGRTSPNLYRSSLNS 194
Query: 187 KSNGSEDCVIVEKSSLFSNLPKGHNVSKFVKVEEEERGYTN--SSGMKRAHVEISSPTNW 244
SN +DC+IVEK + K VS F K EEE R + N SS +RA +EI+SP
Sbjct: 195 -SNRFDDCIIVEKDPSLYDHKKTQGVS-FTKPEEEGRAHRNMFSSPTRRARMEITSPKED 252
Query: 245 ISKSPSATENVNNDVSANGFVTAKAKLERDVRQRRGLMGSSGASVSPQSDNNPNIRGYGA 304
+ SPS TE+ N D S N FVTA+ KLE D +Q+RGL GS SVSPQ ++N + +GYG
Sbjct: 253 NTNSPSGTEDANADFSGNAFVTARTKLEMDAKQKRGLAGSPNTSVSPQCNDNVSYKGYGM 312
Query: 305 KSYGISRRGVRGSFVPPIRNNGSNVGNMTSRISVYVLTIMFMSISHTHAHNYEHVQVLIP 364
+SYG SRRGVRG+FVPP+R+ G GNM + S + + +
Sbjct: 313 RSYGSSRRGVRGNFVPPVRSTGGTAGNMVN--------------SRSGGKGEDALD---- 354
Query: 365 FSSFNYSLEMLCGPDGELPEKLRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVM 424
S L+MLCGPDGELPEKLRNLEPRLIEHVSNEIMDRDP+VRWDDIAGLEHAKKCV
Sbjct: 355 -DSTKRCLDMLCGPDGELPEKLRNLEPRLIEHVSNEIMDRDPNVRWDDIAGLEHAKKCVT 413
Query: 425 EMVIWPLLRPDIFKGCRSPGKGLLLFGPP------------------------------- 453
EMVIWPLLRPDIFKGCRSPG+GLLLFGPP
Sbjct: 414 EMVIWPLLRPDIFKGCRSPGRGLLLFGPPGTGKTMIGKAIAGEAKATFFYISASSLTSKW 473
Query: 454 IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDG 513
IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQ RKS+G
Sbjct: 474 IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQ---------------------RKSEG 512
Query: 514 EHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS--- 570
EHESSRRLKTQFLIEMEGFD+GSEQILL+GATNRPQELDEAARRRLTKRLYIPLPSS
Sbjct: 513 EHESSRRLKTQFLIEMEGFDNGSEQILLIGATNRPQELDEAARRRLTKRLYIPLPSSEAR 572
Query: 571 -----------------------------GYSGSDMKNLVKEASMGPLREALRQGIEITR 601
GYSGSDMKNLVK+ASMGPLREAL+QG +IT
Sbjct: 573 AWIVRNLLEKDGLFNLSKDEIDTICTLTEGYSGSDMKNLVKDASMGPLREALKQGTDITL 632
Query: 602 LQKEDMQPVTLQDFENALPQVRASVSLNELGIYEEWNKQFGSLSL 646
L+KEDM+PVTL+DFE+A+ +VR SVSL+ELG Y+EWNKQFGSLSL
Sbjct: 633 LKKEDMRPVTLKDFESAMQEVRPSVSLSELGTYDEWNKQFGSLSL 677
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|9279636|dbj|BAB01094.1| unnamed protein product [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 682 bits (1761), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/699 (55%), Positives = 443/699 (63%), Gaps = 131/699 (18%)
Query: 14 TSCWRKQVDDNLKRLHSLKFGADYFLDKRDFSSVRLLSLRLLGFLDSHTQSETDEILTRP 73
T CWRK+VD+NLKRL SL FGAD FL+K DFSS ++L LRLLGFLDS + ++ D P
Sbjct: 61 TPCWRKEVDENLKRLQSLLFGADKFLEKSDFSSAQILGLRLLGFLDSRSVTDADRDFIGP 120
Query: 74 IRREAVAKLDEARRALVPDSDRRAFEQAGRAPGCAFSLKGGIDVEKIKQSKYFRANLQQY 133
IRRE +K+D A LV DSDR+AFE A APG F KGG DVEKIKQSKYF ++ Q
Sbjct: 121 IRREVASKIDLALEGLVSDSDRKAFELANTAPGAIFGSKGGFDVEKIKQSKYFGFHVSQS 180
Query: 134 NEQATSELGGRLDRQGKLFSNQSKVMTQEKLASLYGNNIMKTNTGSFRSMLNSKSNGSED 193
N + E+ R D KL K M Q KL SLYGN+I K + ++ +N++ S++
Sbjct: 181 NGKGVKEMEERHDTD-KLIPKAPKSMMQAKLTSLYGNSIGKPDN-QRKTSVNNQDRASDE 238
Query: 194 CVIVEKSSLFSNLPKGHNVSKFVKVEEEERGYTNSSGMKRAHVEISSPTNWISKSPSATE 253
CVIVE+S F G+ G KR H E SS N
Sbjct: 239 CVIVERSHGF--------------------GF----GTKRPHAETSSLAN--------DG 266
Query: 254 NVNNDVSANGFVTAKAKLERDVRQRRGLMGSSGASVSPQSDNNPNIRGYGAKSYGISRRG 313
V D + NGFV+AK KLE DVRQ+RG S + +SPQSD N + G RRG
Sbjct: 267 EVKEDGAPNGFVSAKIKLEMDVRQKRGSTESPSSCLSPQSDKNA-LGRGYGSRSGGLRRG 325
Query: 314 VRGSFVPPIRNNGSNVGNMTSRISVYVLTIMFMSISHTHAHN---YEHVQVLIPFSSFNY 370
R +FVPP++ NG+NVGN+TSRI + S + T N Y H+ V
Sbjct: 326 YRSNFVPPVKTNGNNVGNLTSRIGGKTDDALDDS-TRTWTSNLSVYTHLVV--------S 376
Query: 371 SLEMLCGPDGELPEKLRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWP 430
LEMLCGPDGELPEKLRNLEPRLIEHVSNEIMDRDP+VRWDDIAGLEHAKKCV EMVIWP
Sbjct: 377 HLEMLCGPDGELPEKLRNLEPRLIEHVSNEIMDRDPNVRWDDIAGLEHAKKCVTEMVIWP 436
Query: 431 LLRPDIFKGCRSPGKGLLLFGPP-------------------------------IGEGEK 459
LLRPDIFKGCRSPGKGLLLFGPP IGEGEK
Sbjct: 437 LLRPDIFKGCRSPGKGLLLFGPPGTGKTMIGKAIAGEAKATFFYISASSLTSKWIGEGEK 496
Query: 460 LVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSR 519
LVRALFGVASCRQPAVIFVDEIDSLLSQ RKSDGEHESSR
Sbjct: 497 LVRALFGVASCRQPAVIFVDEIDSLLSQ---------------------RKSDGEHESSR 535
Query: 520 RLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS--------- 570
RLKTQFLIEMEGFDSGSEQILL+GATNRPQELDEAARRRLTKRLYIPLPSS
Sbjct: 536 RLKTQFLIEMEGFDSGSEQILLIGATNRPQELDEAARRRLTKRLYIPLPSSEARAWIIQN 595
Query: 571 -----------------------GYSGSDMKNLVKEASMGPLREALRQGIEITRLQKEDM 607
GYSGSDMKNLVK+A+MGPLREAL++GI+IT L K+DM
Sbjct: 596 LLKKDGLFTLSDDDMNIICNLTEGYSGSDMKNLVKDATMGPLREALKRGIDITNLTKDDM 655
Query: 608 QPVTLQDFENALPQVRASVSLNELGIYEEWNKQFGSLSL 646
+ VTLQDF++AL +VR SVS NELGIYE WN QFGSLSL
Sbjct: 656 RLVTLQDFKDALQEVRPSVSQNELGIYENWNNQFGSLSL 694
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297818272|ref|XP_002877019.1| hypothetical protein ARALYDRAFT_347079 [Arabidopsis lyrata subsp. lyrata] gi|297322857|gb|EFH53278.1| hypothetical protein ARALYDRAFT_347079 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 660 bits (1702), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/708 (54%), Positives = 437/708 (61%), Gaps = 153/708 (21%)
Query: 14 TSCWRKQVDDNLKRLHSLKFGADYFLDKRDFSSVRLLSLRLLGFLDSHTQSETDEILTRP 73
TSCWRK+VD+NLKRL SL FGAD FL+K DFSS ++L LRLLGFLDS + ++ D P
Sbjct: 31 TSCWRKEVDENLKRLQSLLFGADQFLEKSDFSSAQILGLRLLGFLDSRSVTDADRDFICP 90
Query: 74 IRREAVAKLDEARRALVPDSDRRAFEQAGRAPGCAFSLKGGIDVEKIKQSKYFRANLQQY 133
IRRE +K+D A LV DSDR+AFE A PG F K DVEKIKQSK+F ++ Q
Sbjct: 91 IRREVASKVDLALEGLVSDSDRKAFELANTVPGPIFGSK--FDVEKIKQSKHFSFHISQS 148
Query: 134 NEQATSELGGRLDRQGKLFSNQSKVMTQEKLASLYGNNIMKTNTGSFRSMLNSKSNGSED 193
N + E+ R D KL K M Q KL SLYGN+I K + ++ +N++ S++
Sbjct: 149 NGKGVKEMEERQDTD-KLIPKAPKSMMQAKLTSLYGNSIGKPDN-QRKTSVNNQDRASDE 206
Query: 194 CVIVEKSSLFSNLPKGHNVSKFVKVEEEERGYTNSSGMKRAHVEISSPTNWISKSPSATE 253
CVIVE+S F G+ G KR H E SS N
Sbjct: 207 CVIVERSHGF--------------------GF----GTKRTHAETSSLAN--------DG 234
Query: 254 NVNNDVSANGFVTAKAKLERDVRQRRGLMGSSGASVSPQSDNNPNIRGYGAKSYGISRRG 313
+ D + NGFV+AK KLE DVRQRRG S + +SPQS+ N + G RRG
Sbjct: 235 EIKADGAPNGFVSAKIKLEMDVRQRRGSTESPSSCLSPQSEKNA-LGRGYGSRSGGLRRG 293
Query: 314 VRGSFVPPIRNNGSNVGNMTSRISVYVLTIMFMSISHTHAHNYEHVQVLIPFSSFNYSLE 373
RG+FVPP+++NG+NVGN+TSRI + + S LE
Sbjct: 294 YRGNFVPPVKSNGNNVGNLTSRIGGKIDDALD--------------------DSTRTCLE 333
Query: 374 MLCGPDGELPEKLRNLEPRLIEHVSNEIMDRDPHVRWDDI------------AGLEHAKK 421
MLCGPDGELPEKLRNLEPRLIEHVSNEIMDRDP+VRWDDI AGLEHAKK
Sbjct: 334 MLCGPDGELPEKLRNLEPRLIEHVSNEIMDRDPNVRWDDIGTVFLIISYWCAAGLEHAKK 393
Query: 422 CVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP---------------------------- 453
CV EMVIWPLLRPDIFKGCRSPGKGLLLFGPP
Sbjct: 394 CVTEMVIWPLLRPDIFKGCRSPGKGLLLFGPPGTGKTMIGKAIAGEAKATFFYISASSLT 453
Query: 454 ---IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRK 510
IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQ RK
Sbjct: 454 SKWIGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQ---------------------RK 492
Query: 511 SDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570
SDGEHESSRRLKTQFLIEMEGFDSGSEQILL+GATNRPQELDEAARRRLTKRLYIPLPSS
Sbjct: 493 SDGEHESSRRLKTQFLIEMEGFDSGSEQILLIGATNRPQELDEAARRRLTKRLYIPLPSS 552
Query: 571 --------------------------------GYSGSDMKNLVKEASMGPLREALRQGIE 598
GYSGSDMKNLVK+A+MGPLREAL++GI+
Sbjct: 553 EARAWIIQNLLKKDGLFTLSDDDMNIICNLTEGYSGSDMKNLVKDATMGPLREALKRGID 612
Query: 599 ITRLQKEDMQPVTLQDFENALPQVRASVSLNELGIYEEWNKQFGSLSL 646
IT L K+DM+ VTLQDF++AL +VR SVS NELGIYE WN QFGSLSL
Sbjct: 613 ITNLTKDDMRLVTLQDFKDALQEVRPSVSQNELGIYENWNNQFGSLSL 660
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357153631|ref|XP_003576515.1| PREDICTED: fidgetin-like protein 1-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 620 bits (1600), Expect = e-175, Method: Compositional matrix adjust.
Identities = 371/715 (51%), Positives = 438/715 (61%), Gaps = 130/715 (18%)
Query: 17 WRKQVDDNLKRLHSLKFGADYFLDKRDFSSVRLLSLRLLGFLDSHTQSET---DEILTRP 73
WRK+VD+ L+RLHSL FGAD L++ D + ++L+LRLLGFLDS T S + P
Sbjct: 18 WRKEVDERLQRLHSLLFGADAALERGDAAVAQVLALRLLGFLDSQTLSTDAGPEAAFIAP 77
Query: 74 IRREAVAKLDEARRALVPDSDRRAFEQAGRAPGCAFSLKGGIDVEKIKQSKYFRA----- 128
IR A ++L A RA DSDR AFE A + C F+ +G + +EKIK SKYF+A
Sbjct: 78 IRAAASSRLAAASRARASDSDRAAFELAKKDVDCVFAKQGDVSIEKIKCSKYFQALHQKS 137
Query: 129 ----------NLQQYNEQATSELGGRLDRQG----KLFSNQSKVMTQEKLASLYGNNIMK 174
Q++ Q +L + G KL SK+MTQ K+ SLYGN +K
Sbjct: 138 KGNAAVQPSATCQEFTVQGVQQL--EESQAGIENEKLSIRASKLMTQTKITSLYGNKSLK 195
Query: 175 TNTGSFRSMLNSKSNGSEDCVIVEKSSLFSNLPKGHNVSKFVKVEEEERGYTNSSGMKRA 234
N+ S ++M S+ + S+D VE + H + ++ VEE+E+ KR
Sbjct: 196 ANSLSDKNMFESEGDISKDFAGVENEIRTNQNDNRHPI--YLGVEEDEKHCGQFQSAKRK 253
Query: 235 HVEISSPTNWISKSPSATENVNNDVSANGFVTAKAKLERDVRQRRGLMGSSGASVSPQSD 294
H SP + SPS+ + + SA+GFVTAK KL D ++ G G GASVSPQ D
Sbjct: 254 HTGFRSPICEHANSPSSNDEADAPASASGFVTAKIKLAMDAVKKHGHNGHQGASVSPQCD 313
Query: 295 NNPNIRGYGAKSYGISRRGVRGSFVPPIRNNG-SNVGNMTSRISVYVLTIMFMSISHTHA 353
NN R YG + SRRG RG+FVPPIRNNG S +TSR++
Sbjct: 314 NNLGTRNYGVRPSWNSRRGPRGNFVPPIRNNGGSACSTITSRVT---------------G 358
Query: 354 HNYEHVQVLIPFSSFNYSLEMLCGPDGELPEKLRNLEPRLIEHVSNEIMDRDPHVRWDDI 413
N + ++ S LEMLCGPDGELPEKLRNLEPRLIEHVSNEIMD+DP+VRW DI
Sbjct: 359 KNDDSME-----DSIKKCLEMLCGPDGELPEKLRNLEPRLIEHVSNEIMDKDPNVRWVDI 413
Query: 414 AGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP-------------------- 453
AGLEHAKKCV EMVIWPLLRPDIF+GCRSPG+GLLLFGPP
Sbjct: 414 AGLEHAKKCVTEMVIWPLLRPDIFRGCRSPGRGLLLFGPPGTGKTMIGKAIAGEAKATFF 473
Query: 454 -----------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCL 502
IGEGEKLVRALFGVA CRQPAVIFVDEIDSLLS
Sbjct: 474 YISASSLTSKWIGEGEKLVRALFGVACCRQPAVIFVDEIDSLLS---------------- 517
Query: 503 KRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKR 562
QRKSDGEHESSRRLKTQFLIEMEGFDSG+EQILL+GATNRPQELDEAARRRLTKR
Sbjct: 518 -----QRKSDGEHESSRRLKTQFLIEMEGFDSGNEQILLIGATNRPQELDEAARRRLTKR 572
Query: 563 LYIPLPSS-------------------------------GYSGSDMKNLVKEASMGPLRE 591
LYIPLPSS GYSGSDMKNLVK+ASMGPLRE
Sbjct: 573 LYIPLPSSARAWIIRNLLEKDGLFKLSEEETSVVCKLTEGYSGSDMKNLVKDASMGPLRE 632
Query: 592 ALRQGIEITRLQKEDMQPVTLQDFENALPQVRASVSLNELGIYEEWNKQFGSLSL 646
AL++G+EIT L KEDM+PV L+DFE AL +VR SVS NELG YEEWN+QFGSLS+
Sbjct: 633 ALQRGVEITELSKEDMRPVMLKDFEAALQEVRPSVSANELGTYEEWNRQFGSLSI 687
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|326504030|dbj|BAK02801.1| predicted protein [Hordeum vulgare subsp. vulgare] | Back alignment and taxonomy information |
|---|
Score = 615 bits (1587), Expect = e-173, Method: Compositional matrix adjust.
Identities = 364/724 (50%), Positives = 435/724 (60%), Gaps = 121/724 (16%)
Query: 1 MEEEEQCGEVPKTTS--CWRKQVDDNLKRLHSLKFGADYFLDKRDFSSVRLLSLRLLGFL 58
MEE+ + + S WRK+V+ L+R HSL FGAD L++ D ++ ++L LRLLGFL
Sbjct: 1 MEEQPHAADCSSSASPTNWRKEVEGRLRRSHSLLFGADAALERGDAAAAQVLVLRLLGFL 60
Query: 59 DSHT---QSETDEILTRPIRREAVAKLDEARRALVPDSDRRAFEQAGRAPGCAFSLKGGI 115
DS T + + PIR A ++L A RA D+DR AFE A + GC F +G +
Sbjct: 61 DSQTLYADTGPEAAFVAPIRAAASSRLAAASRARASDTDRAAFELAKKIAGCVFPKQGDV 120
Query: 116 DVEKIKQSKYFRA-----------NLQQYNEQATSELGGRLDRQGKLFSNQSKVMTQEKL 164
VEKIK SKYF+A L E+ T + G ++ N+ + Q K+
Sbjct: 121 SVEKIKCSKYFQAFHQTSKGNVADQLNPACEKFTIQGGPHIEESPAGIDNEKLSIAQTKI 180
Query: 165 ASLYGNNIMKTNTGSFRSMLNSKSNGSEDCVIVEKSSLFSNLPKGHNVSKFVKVEEEERG 224
SLY N +K NT S ++ S+ N S++ VE + H ++ VEE+++
Sbjct: 181 TSLYSNKFLKANTVSHNNLFKSEGNMSKEFDCVENEIRTNRNDNKH--PAYLGVEEDKKH 238
Query: 225 YTNSSGMKRAHVEISSPTNWISKSPSATENVNNDVSANGFVTAKAKLERDVRQRRGLMGS 284
+ KR H SP SP + + D ANGFVTA+ KL D Q+ G G
Sbjct: 239 CGSLQTSKRKHTGFRSPICEHVNSPLSKDAA--DAPANGFVTARIKLAMDAVQKHGHNGH 296
Query: 285 SGASVSPQSDNNPNIRGYGAKSYGISRRGVRGSFVPPIRNNGSNVGNMTSRISVYVLTIM 344
GASVSPQ DN+ + + YG + SRRG RG+FVPPIRNNG + N I
Sbjct: 297 QGASVSPQCDNSLSTQNYGVRPSWNSRRGPRGNFVPPIRNNGGSTCN----------AIN 346
Query: 345 FMSISHTHAHNYEHVQVLIPFSSFNYSLEMLCGPDGELPEKLRNLEPRLIEHVSNEIMDR 404
I+ + + E S LEMLCGPDGELPEKLRNLEPRLIEHVSNEIMD+
Sbjct: 347 SRGITGKNDDSME--------DSIKKCLEMLCGPDGELPEKLRNLEPRLIEHVSNEIMDK 398
Query: 405 DPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP----------- 453
DP+VRWDDIAGL+HAKKCV EMVIWPLLRPDIF+GCRSPG+GLLLFGPP
Sbjct: 399 DPNVRWDDIAGLDHAKKCVTEMVIWPLLRPDIFRGCRSPGRGLLLFGPPGTGKTMIGKAI 458
Query: 454 --------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMH 493
IGEGEKLVRALFGVA CRQPAVIFVDEIDSLLS
Sbjct: 459 AGEAKATFFYISASSLTSKWIGEGEKLVRALFGVACCRQPAVIFVDEIDSLLS------- 511
Query: 494 VHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDE 553
QRKSDGEHESSRRLKTQFLIEMEGFDSG+EQILL+GATNRPQELDE
Sbjct: 512 --------------QRKSDGEHESSRRLKTQFLIEMEGFDSGNEQILLIGATNRPQELDE 557
Query: 554 AARRRLTKRLYIPLPSS-------------------------------GYSGSDMKNLVK 582
AARRRLTKRLYIPLPSS GYSGSDMKNLVK
Sbjct: 558 AARRRLTKRLYIPLPSSARTWIIHNLLEKDGLFKLSEEETGVICKLTEGYSGSDMKNLVK 617
Query: 583 EASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRASVSLNELGIYEEWNKQFG 642
+ASMGPLREAL+QG+EIT+L KED++PV L+DFE AL +VR SVS +ELGIYEEWNKQFG
Sbjct: 618 DASMGPLREALQQGVEITKLNKEDVRPVMLKDFEAALQEVRPSVSTSELGIYEEWNKQFG 677
Query: 643 SLSL 646
SLS+
Sbjct: 678 SLSI 681
|
Source: Hordeum vulgare subsp. vulgare Species: Hordeum vulgare Genus: Hordeum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 646 | ||||||
| TAIR|locus:2092025 | 476 | AT3G27120 [Arabidopsis thalian | 0.339 | 0.460 | 0.670 | 1.3e-127 | |
| MGI|MGI:1890648 | 683 | Fignl1 "fidgetin-like 1" [Mus | 0.300 | 0.284 | 0.476 | 5.1e-62 | |
| DICTYBASE|DDB_G0268334 | 792 | DDB_G0268334 "Probable 26S pro | 0.300 | 0.244 | 0.448 | 1.1e-52 | |
| UNIPROTKB|Q6PIW4 | 674 | FIGNL1 "Fidgetin-like protein | 0.335 | 0.321 | 0.451 | 1.9e-49 | |
| UNIPROTKB|A4IHT0 | 656 | fignl1 "Fidgetin-like protein | 0.369 | 0.364 | 0.412 | 2e-49 | |
| UNIPROTKB|F1MNE5 | 683 | FIGNL1 "Uncharacterized protei | 0.312 | 0.295 | 0.477 | 8.6e-49 | |
| RGD|1307112 | 677 | Fignl1 "fidgetin-like 1" [Ratt | 0.303 | 0.289 | 0.467 | 3.2e-48 | |
| UNIPROTKB|D2H7A7 | 676 | FIGNL1 "Uncharacterized protei | 0.303 | 0.289 | 0.481 | 3.1e-47 | |
| ZFIN|ZDB-GENE-030131-1862 | 661 | fignl1 "fidgetin-like 1" [Dani | 0.527 | 0.515 | 0.361 | 2.3e-46 | |
| UNIPROTKB|J9P4P7 | 676 | FIGNL1 "Uncharacterized protei | 0.312 | 0.298 | 0.468 | 7.2e-46 |
| TAIR|locus:2092025 AT3G27120 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 734 (263.4 bits), Expect = 1.3e-127, Sum P(3) = 1.3e-127
Identities = 155/231 (67%), Positives = 175/231 (75%)
Query: 372 LEMLCGPDGELPEKLRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPL 431
LEMLCGPDGELPEKLRNLEPRLIEHVSNEIMDRDP+VRWDDIAGLEHAKKCV EMVIWPL
Sbjct: 160 LEMLCGPDGELPEKLRNLEPRLIEHVSNEIMDRDPNVRWDDIAGLEHAKKCVTEMVIWPL 219
Query: 432 LRPDIFKGCRSPGKGLLLFGPPIGEGEKLV-RALFGVA-------SCRQPAVIFVDEIDS 483
LRPDIFKGCRSPGKGLLLFGPP G G+ ++ +A+ G A S ++ E +
Sbjct: 220 LRPDIFKGCRSPGKGLLLFGPP-GTGKTMIGKAIAGEAKATFFYISASSLTSKWIGEGEK 278
Query: 484 LLSQMLPYMHVHH-IKLFC--LKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQIL 540
L+ + +F + QRKSDGEHESSRRLKTQFLIEMEGFDSGSEQIL
Sbjct: 279 LVRALFGVASCRQPAVIFVDEIDSLLSQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQIL 338
Query: 541 LVGATNRPQELDEAARRRLTKRLYIPLPSSGYSGSDMKNLVKEASMGPLRE 591
L+GATNRPQELDEAARRRLTKRLYIPLPSS ++NL+K+ + L +
Sbjct: 339 LIGATNRPQELDEAARRRLTKRLYIPLPSSEARAWIIQNLLKKDGLFTLSD 389
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| MGI|MGI:1890648 Fignl1 "fidgetin-like 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 453 (164.5 bits), Expect = 5.1e-62, Sum P(3) = 5.1e-62
Identities = 101/212 (47%), Positives = 136/212 (64%)
Query: 386 LRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGK 445
L+N+EPR++E + NEIMD P V WDDIAG+E AK + E+V+WP++RPDIF G R P K
Sbjct: 385 LKNVEPRMVELIMNEIMDHGPPVHWDDIAGVEFAKATIKEIVVWPMMRPDIFTGLRGPPK 444
Query: 446 GLLLFGPPIGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKR- 504
G+LLFGPP G G+ L+ +AS + A F SL S+ + LF + R
Sbjct: 445 GILLFGPP-GTGKTLIGKC--IAS-QSGATFFSISASSLTSKWVGEGEKMVRALFAVARC 500
Query: 505 ------FY------FQRKSDGEHESSRRLKTQFLIEMEGFDSGSE-QILLVGATNRPQEL 551
F ++ DGEHESSRR+KT+FL++++G + SE +IL+VGATNRPQE+
Sbjct: 501 QQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEI 560
Query: 552 DEAARRRLTKRLYIPLPSSGYSGSDMKNLVKE 583
DEAARRRL KRLYIPLP + + NL+ +
Sbjct: 561 DEAARRRLVKRLYIPLPEASARKQIVGNLMSK 592
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| DICTYBASE|DDB_G0268334 DDB_G0268334 "Probable 26S protease subunit YTA6" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 419 (152.6 bits), Expect = 1.1e-52, Sum P(4) = 1.1e-52
Identities = 96/214 (44%), Positives = 135/214 (63%)
Query: 384 EKLRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSP 443
+KLRNLEP ++E + NEI+D+ V+W DIAGL K +MEMV++P++RP++FKG R P
Sbjct: 493 DKLRNLEPVMLERICNEILDKRQEVKWGDIAGLSEVKSQIMEMVVFPIIRPELFKGLRIP 552
Query: 444 GKGLLLFGPPIGEGEKLVRALFGVASCRQ-PAVIFVDEIDSLLSQMLPYMHVHHIKLFCL 502
KGLLLFGPP G G+ ++ G A Q A F +L S+ + LF +
Sbjct: 553 PKGLLLFGPP-GTGKTMI----GKAIATQVKATFFSISASTLTSKWIGEGEKMVRCLFAV 607
Query: 503 KRFYFQR-------------KSDGEHESSRRLKTQFLIEMEGFDSGSE-QILLVGATNRP 548
R + +++ E+E+SRR+KT+FLI+ +G +E Q+LL+GATNRP
Sbjct: 608 ARCFLPSVIFIDEIDSLLAARTENENEASRRIKTEFLIQWDGVAGNAEDQMLLIGATNRP 667
Query: 549 QELDEAARRRLTKRLYIPLPSSGYSGSDMKNLVK 582
ELDEAARRR+TKRLYIPLP + + +KNL+K
Sbjct: 668 DELDEAARRRMTKRLYIPLPDNESRLALVKNLLK 701
|
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| UNIPROTKB|Q6PIW4 FIGNL1 "Fidgetin-like protein 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 462 (167.7 bits), Expect = 1.9e-49, Sum P(2) = 1.9e-49
Identities = 106/235 (45%), Positives = 145/235 (61%)
Query: 378 PDGELPEKLRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIF 437
P + E+L+NLEP++IE + NEIMD P V W+DIAG+E AK + E+V+WP+LRPDIF
Sbjct: 368 PAHPVDERLKNLEPKMIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIF 427
Query: 438 KGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHI 497
G R P KG+LLFGPP G G+ L+ +AS + A F SL S+ +
Sbjct: 428 TGLRGPPKGILLFGPP-GTGKTLIGKC--IAS-QSGATFFSISASSLTSKWVGEGEKMVR 483
Query: 498 KLFCLKR-------FY------FQRKSDGEHESSRRLKTQFLIEMEGFDSGSE-QILLVG 543
LF + R F ++ DGEHESSRR+KT+FL++++G + SE +IL+VG
Sbjct: 484 ALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVG 543
Query: 544 ATNRPQELDEAARRRLTKRLYIPLPSSGYSGSDMKNLVKEASMGPLREALRQGIE 598
ATNRPQE+DEAARRRL KRLYIPLP + + NL+ + E + Q ++
Sbjct: 544 ATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQ 598
|
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| UNIPROTKB|A4IHT0 fignl1 "Fidgetin-like protein 1" [Xenopus (Silurana) tropicalis (taxid:8364)] | Back alignment and assigned GO terms |
|---|
Score = 456 (165.6 bits), Expect = 2.0e-49, Sum P(2) = 2.0e-49
Identities = 109/264 (41%), Positives = 153/264 (57%)
Query: 384 EKLRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSP 443
E+L+N+EP++IE + +EIMD P + WDDIAGLE AK + E+V+WP+LRPDIF G R P
Sbjct: 356 ERLKNIEPKMIELIMSEIMDHGPPLNWDDIAGLEFAKTTIKEIVVWPMLRPDIFTGLRGP 415
Query: 444 GKGLLLFGPPIGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLK 503
KG+LLFGPP G G+ L+ +C+ A F SL S+ + LF +
Sbjct: 416 PKGILLFGPP-GTGKTLIGKCI---ACQSGATFFSISASSLTSKWVGEGEKMVRALFTVA 471
Query: 504 RFY-------------FQRKSDGEHESSRRLKTQFLIEMEGFDSGSE-QILLVGATNRPQ 549
R + ++ +GEHESSRR+KT+FL++++G + S+ +IL+VGATNRPQ
Sbjct: 472 RCHQPAVIFIDEIDSLLSQRGEGEHESSRRIKTEFLVQLDGATTSSDDRILVVGATNRPQ 531
Query: 550 ELDEAARRRLTKRLYIPLPSSGYSGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQP 609
E+DEAARRRL KRLYIPLP + S K +V Q +E LQ +
Sbjct: 532 EIDEAARRRLVKRLYIPLPEA----SARKQIVVSLMAKEHCSLAEQEVEAIVLQADGFSG 587
Query: 610 VTLQDF--ENALPQVRASVSLNEL 631
+ E AL +R S+ L ++
Sbjct: 588 ADMTQLCREAALGPIR-SIQLMDI 610
|
|
| UNIPROTKB|F1MNE5 FIGNL1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 464 (168.4 bits), Expect = 8.6e-49, Sum P(2) = 8.6e-49
Identities = 105/220 (47%), Positives = 141/220 (64%)
Query: 378 PDGELPEKLRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIF 437
P + E+L+NLEPR+IE + NEIMD+ P V W+DIAG+E AK + E+V+WP+LRPDIF
Sbjct: 377 PAHPMDERLKNLEPRMIELIMNEIMDQGPPVNWEDIAGVEFAKTTIKEIVVWPMLRPDIF 436
Query: 438 KGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHI 497
G R P KG+LLFGPP G G+ L+ +AS + A F SL S+ +
Sbjct: 437 TGLRGPPKGILLFGPP-GTGKTLIGKC--IAS-QAGATFFSISASSLTSKWVGEGEKMVR 492
Query: 498 KLFCLKR-------FY------FQRKSDGEHESSRRLKTQFLIEMEGFDSGSE-QILLVG 543
LF + R F ++ DGEHESSRR+KT+FL++++G + SE +IL+VG
Sbjct: 493 ALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGAATSSEDRILVVG 552
Query: 544 ATNRPQELDEAARRRLTKRLYIPLPSSGYSGSDMKNLVKE 583
ATNRPQE+DEAARRRL KRLYIPLP + + NL+ +
Sbjct: 553 ATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVVNLMSK 592
|
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| RGD|1307112 Fignl1 "fidgetin-like 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 453 (164.5 bits), Expect = 3.2e-48, Sum P(2) = 3.2e-48
Identities = 100/214 (46%), Positives = 138/214 (64%)
Query: 384 EKLRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSP 443
++L+N+EPR++E + NEIMD P V W+DIAG+E AK + E+V+WP++RPDIF G R P
Sbjct: 377 DRLKNVEPRMVELIMNEIMDHGPPVHWEDIAGVEFAKATIKEIVVWPMMRPDIFTGLRGP 436
Query: 444 GKGLLLFGPPIGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLK 503
KG+LLFGPP G G+ L+ +AS + A F SL S+ + LF +
Sbjct: 437 PKGILLFGPP-GTGKTLIGKC--IAS-QSGATFFSISASSLTSKWVGEGEKMVRALFAVA 492
Query: 504 R-------FY------FQRKSDGEHESSRRLKTQFLIEMEGFDSGSE-QILLVGATNRPQ 549
R F ++ DGEHESSRR+KT+FL++++G + SE +IL+VGATNRPQ
Sbjct: 493 RCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQ 552
Query: 550 ELDEAARRRLTKRLYIPLPSSGYSGSDMKNLVKE 583
E+DEAARRRL KRLYIPLP + + NL+ +
Sbjct: 553 EIDEAARRRLVKRLYIPLPEASARKQIVVNLMSK 586
|
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| UNIPROTKB|D2H7A7 FIGNL1 "Uncharacterized protein" [Ailuropoda melanoleuca (taxid:9646)] | Back alignment and assigned GO terms |
|---|
Score = 458 (166.3 bits), Expect = 3.1e-47, Sum P(2) = 3.1e-47
Identities = 103/214 (48%), Positives = 138/214 (64%)
Query: 384 EKLRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSP 443
E+LRNLEP++IE + NEIMD P V W+DIAG+E AK + E+V+WP++RPDIF G R P
Sbjct: 376 ERLRNLEPKMIELIMNEIMDHGPPVSWEDIAGVEFAKATIKEIVVWPMMRPDIFTGLRGP 435
Query: 444 GKGLLLFGPPIGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLK 503
KG+LLFGPP G G+ L+ +AS + A F SL S+ + LF +
Sbjct: 436 PKGILLFGPP-GTGKTLIGKC--IAS-QSGATFFSISASSLTSKWVGEGEKMVRALFAVA 491
Query: 504 R-------FY------FQRKSDGEHESSRRLKTQFLIEMEGFDSGSE-QILLVGATNRPQ 549
R F ++ DGEHESSRR+KT+FL++++G + SE +IL+VGATNRPQ
Sbjct: 492 RCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQ 551
Query: 550 ELDEAARRRLTKRLYIPLPSSGYSGSDMKNLVKE 583
E+DEAARRRL KRLYIPLP + + NL+ +
Sbjct: 552 EIDEAARRRLVKRLYIPLPEASARKQIVINLMSK 585
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| ZFIN|ZDB-GENE-030131-1862 fignl1 "fidgetin-like 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
Identities = 137/379 (36%), Positives = 204/379 (53%)
Query: 277 QRRGLMGS---SGASVSPQSDNNPNIRGYGAKSY-GISR--RGVRGSFVPPIRNNGSNVG 330
+R+ GS S S P S +RG G + GIS R R F+ + S+ G
Sbjct: 251 KRKNFYGSGTESSRSSFP-SQGEQELRGRGLRGEEGISTNFRSAREQFIVDQQKKHSHQG 309
Query: 331 NMTSRISVYVLTIMFMSISHTHAHNYEHVQVLIPFSSFNYSLEMLCGPDGE-LPEKLRNL 389
S +V+ +T + + + + + + P L+ D + + E+L+N
Sbjct: 310 QRGSPGNVFTITKKCLGANRSRGASSKFIS---PMPRQEEDLKDNTPKDMQPVDERLKNF 366
Query: 390 EPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLL 449
EP++IE + +EIMD P V WDDIAGLE AK + E+V+WP+LRPDIF G R P KG+LL
Sbjct: 367 EPKIIELIMSEIMDHGPPVAWDDIAGLEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILL 426
Query: 450 FGPPIGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFY--- 506
FGPP G G+ L+ +C+ A F SL S+ + LF + R +
Sbjct: 427 FGPP-GTGKTLIGKCI---ACQSGATFFSISASSLTSKWVGEGEKMVRALFAIARCHQPA 482
Query: 507 ----------FQRKSDGEHESSRRLKTQFLIEMEGFDSGSE-QILLVGATNRPQELDEAA 555
+++DGEH+SSRR+KT+FL++++G + +E +IL+VGATNRPQE+DEAA
Sbjct: 483 VIFIDEIDSLLSQRTDGEHDSSRRIKTEFLVQLDGAATSAEDRILVVGATNRPQEIDEAA 542
Query: 556 RRRLTKRLYIPLPSSGYSGSDMKNLV--KEASMG-PLREALRQGIEITRLQKEDMQPVTL 612
RRRL KRLYIPLP + + NL+ +++ +G E + QG E DM +
Sbjct: 543 RRRLAKRLYIPLPEAEARRQIVTNLMSHEKSQLGVDEMEKVVQGTE--GFSGADMTQLCR 600
Query: 613 QDFENALPQVRASVSLNEL 631
E AL +R S+SL+++
Sbjct: 601 ---EAALGPIR-SISLSDI 615
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| UNIPROTKB|J9P4P7 FIGNL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 458 (166.3 bits), Expect = 7.2e-46, Sum P(2) = 7.2e-46
Identities = 103/220 (46%), Positives = 140/220 (63%)
Query: 378 PDGELPEKLRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIF 437
P + E+L+NLEP++IE + NEIMD P V W+DIAG+E AK + E+V+WP++RPDIF
Sbjct: 370 PAHPVDERLKNLEPKMIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMMRPDIF 429
Query: 438 KGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHI 497
G R P KG+LLFGPP G G+ L+ +AS + A F SL S+ +
Sbjct: 430 TGLRGPPKGILLFGPP-GTGKTLIGKC--IAS-QSGATFFSISASSLTSKWVGEGEKMVR 485
Query: 498 KLFCLKR-------FY------FQRKSDGEHESSRRLKTQFLIEMEGFDSGSE-QILLVG 543
LF + R F ++ DGEHESSRR+KT+FL++++G + SE +IL+VG
Sbjct: 486 ALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVG 545
Query: 544 ATNRPQELDEAARRRLTKRLYIPLPSSGYSGSDMKNLVKE 583
ATNRPQE+DEAARRRL KRLYIPLP + + NL+ +
Sbjct: 546 ATNRPQEIDEAARRRLVKRLYIPLPEASARRQIVINLMSK 585
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | fgenesh1_pg.C_scaffold_5000471 | annotation not avaliable (660 aa) | |||||||||
(Arabidopsis lyrata) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 646 | |||
| COG0464 | 494 | COG0464, SpoVK, ATPases of the AAA+ class [Posttra | 2e-41 | |
| TIGR01243 | 733 | TIGR01243, CDC48, AAA family ATPase, CDC48 subfami | 2e-32 | |
| PRK03992 | 389 | PRK03992, PRK03992, proteasome-activating nucleoti | 3e-27 | |
| COG1222 | 406 | COG1222, RPT1, ATP-dependent 26S proteasome regula | 6e-25 | |
| TIGR01243 | 733 | TIGR01243, CDC48, AAA family ATPase, CDC48 subfami | 1e-24 | |
| TIGR01242 | 364 | TIGR01242, 26Sp45, 26S proteasome subunit P45 fami | 4e-22 | |
| pfam00004 | 131 | pfam00004, AAA, ATPase family associated with vari | 7e-22 | |
| TIGR01241 | 495 | TIGR01241, FtsH_fam, ATP-dependent metalloprotease | 1e-17 | |
| PTZ00454 | 398 | PTZ00454, PTZ00454, 26S protease regulatory subuni | 5e-16 | |
| PTZ00361 | 438 | PTZ00361, PTZ00361, 26 proteosome regulatory subun | 4e-15 | |
| PRK10733 | 644 | PRK10733, hflB, ATP-dependent metalloprotease; Rev | 3e-12 | |
| COG0465 | 596 | COG0465, HflB, ATP-dependent Zn proteases [Posttra | 1e-11 | |
| CHL00176 | 638 | CHL00176, ftsH, cell division protein; Validated | 6e-11 | |
| COG1223 | 368 | COG1223, COG1223, Predicted ATPase (AAA+ superfami | 4e-09 | |
| TIGR03689 | 512 | TIGR03689, pup_AAA, proteasome ATPase | 9e-09 | |
| COG0464 | 494 | COG0464, SpoVK, ATPases of the AAA+ class [Posttra | 4e-08 | |
| pfam09336 | 62 | pfam09336, Vps4_C, Vps4 C terminal oligomerisation | 6e-05 | |
| cd00009 | 151 | cd00009, AAA, The AAA+ (ATPases Associated with a | 8e-04 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 0.002 |
| >gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 156 bits (397), Expect = 2e-41
Identities = 93/308 (30%), Positives = 131/308 (42%), Gaps = 108/308 (35%)
Query: 398 SNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGC-RSPGKGLLLFGPP--- 453
S ++ D V DDI GLE AK+ + E + PL RP++F+ P KG+LL+GPP
Sbjct: 229 SRGVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTG 288
Query: 454 ----------------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLL 485
+GE EK +R LF A P++IF+DEIDSL
Sbjct: 289 KTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLA 348
Query: 486 SQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGAT 545
S E S RR+ Q L E++G + +L++ AT
Sbjct: 349 SGR----------------------GPSEDGSGRRVVGQLLTELDGIEKAEG-VLVIAAT 385
Query: 546 NRPQELDEAARR--RLTKRLYIPLPS--------------------------------SG 571
NRP +LD A R R + +Y+PLP G
Sbjct: 386 NRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEG 445
Query: 572 YSGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRASVSLNEL 631
YSG+D+ LV+EA++ LREA R + VTL DF +AL +++ SV+
Sbjct: 446 YSGADIAALVREAALEALREARR-------------REVTLDDFLDALKKIKPSVT---- 488
Query: 632 GIYEEWNK 639
YEEW +
Sbjct: 489 --YEEWKE 494
|
Length = 494 |
| >gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 2e-32
Identities = 94/331 (28%), Positives = 144/331 (43%), Gaps = 96/331 (29%)
Query: 384 EKLRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFK--GCR 441
E L+ +EP I V E+ P+VRW DI GLE K+ + E V WPL P+IF+ G R
Sbjct: 430 EALKMVEPSAIREVLVEV----PNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIR 485
Query: 442 SPGKGLLLFGPP-------------------------------IGEGEKLVRALFGVASC 470
P KG+LLFGPP +GE EK +R +F A
Sbjct: 486 PP-KGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQ 544
Query: 471 RQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEME 530
PA+IF DEID++ R + + + R+ Q L EM+
Sbjct: 545 AAPAIIFFDEIDAIAPA---------------------RGARFDTSVTDRIVNQLLTEMD 583
Query: 531 GFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLP-------------------- 568
G S ++++ ATNRP LD A R R + + +P P
Sbjct: 584 GIQELSN-VVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAE 642
Query: 569 ----------SSGYSGSDMKNLVKEASMGPLREAL----RQGIEITRLQKEDMQPVTLQD 614
+ GY+G+D++ + +EA+M LRE++ ++ +E+ + V ++
Sbjct: 643 DVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEKLEVGEEEFLKDLKVEMRH 702
Query: 615 FENALPQVRASVSLNELGIYEEWNKQFGSLS 645
F AL +V+ SVS ++ YE K+ L+
Sbjct: 703 FLEALKKVKPSVSKEDMLRYERLAKELKRLT 733
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This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. Length = 733 |
| >gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 3e-27
Identities = 81/290 (27%), Positives = 122/290 (42%), Gaps = 101/290 (34%)
Query: 400 EIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFK--GCRSPGKGLLLFGPP---- 453
E+++ P+V ++DI GLE + V E V PL +P++F+ G P KG+LL+GPP
Sbjct: 121 EVIES-PNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGI-EPPKGVLLYGPPGTGK 178
Query: 454 ---------------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLS 486
IGEG +LVR LF +A + P++IF+DEID++ +
Sbjct: 179 TLLAKAVAHETNATFIRVVGSELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAA 238
Query: 487 QMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATN 546
KR + G+ E R L Q L EM+GFD + ++ ATN
Sbjct: 239 ----------------KRTD--SGTSGDREVQRTL-MQLLAEMDGFDPRGN-VKIIAATN 278
Query: 547 RPQELDEAARR--RLTKRLYIPLPS------------------------------SGYSG 574
R LD A R R + + +PLP G SG
Sbjct: 279 RIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASG 338
Query: 575 SDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRA 624
+D+K + EA M +R+ + VT++DF A+ +V
Sbjct: 339 ADLKAICTEAGMFAIRDDRTE--------------VTMEDFLKAIEKVMG 374
|
Length = 389 |
| >gnl|CDD|224143 COG1222, RPT1, ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 6e-25
Identities = 80/291 (27%), Positives = 125/291 (42%), Gaps = 100/291 (34%)
Query: 397 VSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFK--GCRSPGKGLLLFGPP- 453
VS ++ P V ++DI GL+ + + E+V PL P++F+ G P KG+LL+GPP
Sbjct: 137 VSVMEVEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPP-KGVLLYGPPG 195
Query: 454 ------------------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDS 483
IGEG +LVR LF +A + P++IF+DEID+
Sbjct: 196 TGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDA 255
Query: 484 LLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVG 543
+ + KRF + G+ E R + + L +++GFD + ++
Sbjct: 256 IGA----------------KRFD--SGTSGDREVQRTM-LELLNQLDGFDP-RGNVKVIM 295
Query: 544 ATNRPQELDEAARR--RLTKRLYIPLPS------------------------------SG 571
ATNRP LD A R R +++ PLP G
Sbjct: 296 ATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEG 355
Query: 572 YSGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQV 622
+SG+D+K + EA M +RE R+ VT++DF A+ +V
Sbjct: 356 FSGADLKAICTEAGMFAIRE--RRDE------------VTMEDFLKAVEKV 392
|
Length = 406 |
| >gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 1e-24
Identities = 83/300 (27%), Positives = 130/300 (43%), Gaps = 92/300 (30%)
Query: 395 EHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP 453
+ V EI + P V ++DI GL+ AK+ + EMV P+ P++F+ P KG+LL+GPP
Sbjct: 162 KPVREEIERKVPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPP 221
Query: 454 -------------------------------IGEGEKLVRALFGVASCRQPAVIFVDEID 482
GE E+ +R +F A P++IF+DEID
Sbjct: 222 GTGKTLLAKAVANEAGAYFISINGPEIMSKYYGESEERLREIFKEAEENAPSIIFIDEID 281
Query: 483 SLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLV 542
++ + + + GE E +R+ Q L M+G G +++++
Sbjct: 282 AIAPK--------------------REEVTGEVE--KRVVAQLLTLMDGL-KGRGRVIVI 318
Query: 543 GATNRPQELDEAARR--RLTKRLYIPLP------------------------------SS 570
GATNRP LD A RR R + + I +P +
Sbjct: 319 GATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTH 378
Query: 571 GYSGSDMKNLVKEASMGPLREALRQG---IEITRLQKEDMQ--PVTLQDFENALPQVRAS 625
G+ G+D+ L KEA+M LR +R+G E + E ++ VT++DF AL V S
Sbjct: 379 GFVGADLAALAKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEPS 438
|
This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. Length = 733 |
| >gnl|CDD|130309 TIGR01242, 26Sp45, 26S proteasome subunit P45 family | Back alignment and domain information |
|---|
Score = 97.9 bits (244), Expect = 4e-22
Identities = 78/287 (27%), Positives = 118/287 (41%), Gaps = 99/287 (34%)
Query: 400 EIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP----- 453
E+ +R P+V ++DI GLE + + E V PL P++F+ P KG+LL+GPP
Sbjct: 112 EVEER-PNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKT 170
Query: 454 --------------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQ 487
IGEG +LVR +F +A + P++IF+DEID++ ++
Sbjct: 171 LLAKAVAHETNATFIRVVGSELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAK 230
Query: 488 MLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNR 547
+ G+ E R L Q L E++GFD + ++ ATNR
Sbjct: 231 RT------------------DSGTSGDREVQRTL-MQLLAELDGFDP-RGNVKVIAATNR 270
Query: 548 PQELDEAARR--RLTKRLYIPLPS------------------------------SGYSGS 575
P LD A R R + + +PLP G SG+
Sbjct: 271 PDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGA 330
Query: 576 DMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQV 622
D+K + EA M +RE VT+ DF A+ +V
Sbjct: 331 DLKAICTEAGMFAIREERDY--------------VTMDDFIKAVEKV 363
|
Many proteins may score above the trusted cutoff because an internal. Length = 364 |
| >gnl|CDD|215649 pfam00004, AAA, ATPase family associated with various cellular activities (AAA) | Back alignment and domain information |
|---|
Score = 91.5 bits (228), Expect = 7e-22
Identities = 40/120 (33%), Positives = 56/120 (46%), Gaps = 23/120 (19%)
Query: 449 LFGPPIGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQ 508
L +GE EK +R LF A P VIF+DEID+L
Sbjct: 34 LVSKYVGESEKRLRELFEAAKKLAPCVIFIDEIDALAG---------------------- 71
Query: 509 RKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARR-RLTKRLYIPL 567
+ G SRR+ Q L E++GF S +++++ ATNRP +LD A R R + + PL
Sbjct: 72 SRGSGGDSESRRVVNQLLTELDGFTSSLSKVIVIAATNRPDKLDPALLRGRFDRIIEFPL 131
|
AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes. Length = 131 |
| >gnl|CDD|233327 TIGR01241, FtsH_fam, ATP-dependent metalloprotease FtsH | Back alignment and domain information |
|---|
Score = 86.2 bits (214), Expect = 1e-17
Identities = 73/290 (25%), Positives = 116/290 (40%), Gaps = 101/290 (34%)
Query: 402 MDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFK--GCRSPGKGLLLFGPP------ 453
+ P V + D+AG++ AK+ +ME+V + L P F G + P KG+LL GPP
Sbjct: 46 NEEKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIP-KGVLLVGPPGTGKTL 103
Query: 454 -------------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQM 488
+G G VR LF A P +IF+DEID++ Q
Sbjct: 104 LAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQR 163
Query: 489 LPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRP 548
G ++ + Q L+EM+GF + ++++ ATNRP
Sbjct: 164 -------------------GAGLGGGNDEREQTLNQLLVEMDGFG-TNTGVIVIAATNRP 203
Query: 549 QELDEAARR--RLTKRLYIPLP------------------------------SSGYSGSD 576
LD A R R +++ + LP + G+SG+D
Sbjct: 204 DVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGAD 263
Query: 577 MKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRASV 626
+ NL+ EA++ A R+ + E +T+ D E A+ +V A
Sbjct: 264 LANLLNEAAL----LAARKN------KTE----ITMNDIEEAIDRVIAGP 299
|
HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 495 |
| >gnl|CDD|240423 PTZ00454, PTZ00454, 26S protease regulatory subunit 6B-like protein; Provisional | Back alignment and domain information |
|---|
Score = 80.2 bits (198), Expect = 5e-16
Identities = 59/201 (29%), Positives = 94/201 (46%), Gaps = 54/201 (26%)
Query: 402 MDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP------- 453
M P V + DI GL+ K+ + E V PL P++++ P +G+LL+GPP
Sbjct: 136 MSEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTML 195
Query: 454 ------------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQML 489
+GEG ++VR +F +A P++IF+DE+DS+ +
Sbjct: 196 AKAVAHHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIAT--- 252
Query: 490 PYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQ 549
KRF Q +D E +R+ + L +M+GFD + + ++ ATNR
Sbjct: 253 -------------KRFDAQTGADRE---VQRILLELLNQMDGFDQ-TTNVKVIMATNRAD 295
Query: 550 ELDEAARR--RLTKRLYIPLP 568
LD A R RL +++ PLP
Sbjct: 296 TLDPALLRPGRLDRKIEFPLP 316
|
Length = 398 |
| >gnl|CDD|185575 PTZ00361, PTZ00361, 26 proteosome regulatory subunit 4-like protein; Provisional | Back alignment and domain information |
|---|
Score = 77.9 bits (192), Expect = 4e-15
Identities = 61/210 (29%), Positives = 97/210 (46%), Gaps = 56/210 (26%)
Query: 396 HVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFK--GCRSPGKGLLLFGPP 453
VS +D+ P + DI GLE + + E V PL P+++ G + P KG++L+GPP
Sbjct: 168 LVSVMKVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPP-KGVILYGPP 226
Query: 454 -------------------------------IGEGEKLVRALFGVASCRQPAVIFVDEID 482
+G+G KLVR LF VA P+++F+DEID
Sbjct: 227 GTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEID 286
Query: 483 SLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLV 542
++ + KR + S GE E R + + L +++GFDS + + ++
Sbjct: 287 AIGT----------------KR--YDATSGGEKEIQRTM-LELLNQLDGFDSRGD-VKVI 326
Query: 543 GATNRPQELDEAARR--RLTKRLYIPLPSS 570
ATNR + LD A R R+ +++ P P
Sbjct: 327 MATNRIESLDPALIRPGRIDRKIEFPNPDE 356
|
Length = 438 |
| >gnl|CDD|182683 PRK10733, hflB, ATP-dependent metalloprotease; Reviewed | Back alignment and domain information |
|---|
Score = 69.3 bits (169), Expect = 3e-12
Identities = 65/240 (27%), Positives = 100/240 (41%), Gaps = 87/240 (36%)
Query: 412 DIAGLEHAKKCVMEMVIWPLLRPDIFK--GCRSPGKGLLLFGPP---------------- 453
D+AG + AK+ V E+V + L P F+ G + P KG+L+ GPP
Sbjct: 153 DVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIP-KGVLMVGPPGTGKTLLAKAIAGEAK 210
Query: 454 ---------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIK 498
+G G VR +F A P +IF+DEID++ Q +
Sbjct: 211 VPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGL------ 264
Query: 499 LFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARR- 557
G H+ + Q L+EM+GF+ G+E I+++ ATNRP LD A R
Sbjct: 265 -------------GGGHDEREQTLNQMLVEMDGFE-GNEGIIVIAATNRPDVLDPALLRP 310
Query: 558 -RLTKRLYIPLP------------------------------SSGYSGSDMKNLVKEASM 586
R +++ + LP + G+SG+D+ NLV EA++
Sbjct: 311 GRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAAL 370
|
Length = 644 |
| >gnl|CDD|223541 COG0465, HflB, ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 1e-11
Identities = 70/289 (24%), Positives = 111/289 (38%), Gaps = 103/289 (35%)
Query: 400 EIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFK--GCRSPGKGLLLFGPP---- 453
++ V + D+AG++ AK+ + E+V L P ++ G + P KG+LL GPP
Sbjct: 139 LYLEDQVKVTFADVAGVDEAKEELSELVD-FLKNPKKYQALGAKIP-KGVLLVGPPGTGK 196
Query: 454 ---------------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLS 486
+G G VR LF A P +IF+DEID++
Sbjct: 197 TLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGR 256
Query: 487 Q-MLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGAT 545
Q + E E + Q L+EM+GF I++ AT
Sbjct: 257 QRGAGLGGGND-----------------EREQT---LNQLLVEMDGFGGNEGVIVI-AAT 295
Query: 546 NRPQELDEAARR--RLTKRLYIPLP------------------------------SSGYS 573
NRP LD A R R +++ + LP + G+S
Sbjct: 296 NRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFS 355
Query: 574 GSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQV 622
G+D+ NL+ EA AL + + + +T++D E A+ +V
Sbjct: 356 GADLANLLNEA-------ALLAA-------RRNKKEITMRDIEEAIDRV 390
|
Length = 596 |
| >gnl|CDD|214386 CHL00176, ftsH, cell division protein; Validated | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 6e-11
Identities = 65/250 (26%), Positives = 102/250 (40%), Gaps = 91/250 (36%)
Query: 402 MDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFK--GCRSPGKGLLLFGPP------ 453
M+ D + + DIAG+E AK+ E+V + L +P+ F G + P KG+LL GPP
Sbjct: 174 MEADTGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIP-KGVLLVGPPGTGKTL 231
Query: 454 -------------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQM 488
+G G VR LF A P ++F+DEID++ Q
Sbjct: 232 LAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQ- 290
Query: 489 LPYMHVHHIKLFCLKRFYFQRKS--DGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATN 546
R + G ++ + Q L EM+GF G++ ++++ ATN
Sbjct: 291 --------------------RGAGIGGGNDEREQTLNQLLTEMDGF-KGNKGVIVIAATN 329
Query: 547 RPQELDEAARR--RLTKRLYIPLP------------------------------SSGYSG 574
R LD A R R +++ + LP + G+SG
Sbjct: 330 RVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSG 389
Query: 575 SDMKNLVKEA 584
+D+ NL+ EA
Sbjct: 390 ADLANLLNEA 399
|
Length = 638 |
| >gnl|CDD|224144 COG1223, COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 4e-09
Identities = 71/284 (25%), Positives = 105/284 (36%), Gaps = 105/284 (36%)
Query: 406 PHVRWDDIAGLEHAK-KC--VMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP--------- 453
+ DD+ G E AK KC +ME L P+ F G +P K +L +GPP
Sbjct: 116 SDITLDDVIGQEEAKRKCRLIMEY----LENPERF-GDWAP-KNVLFYGPPGTGKTMMAK 169
Query: 454 ----------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPY 491
+G+G + + L+ A P ++F+DE+D++
Sbjct: 170 ALANEAKVPLLLVKATELIGEHVGDGARRIHELYERARKAAPCIVFIDELDAI------- 222
Query: 492 MHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQEL 551
L R Y + + D E L L E++G E ++ + ATNRP+ L
Sbjct: 223 ---------ALDRRYQELRGDVS-EIVNAL----LTELDGIKEN-EGVVTIAATNRPELL 267
Query: 552 DEAARRRLTK----------------RLYI---PLP-----------SSGYSGSDMKNLV 581
D A R R + Y PLP + G SG D+K V
Sbjct: 268 DPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKV 327
Query: 582 KEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRAS 625
L+ AL + I ED + V +D E AL + R
Sbjct: 328 -------LKTALHRAI------AEDREKVEREDIEKALKKERKR 358
|
Length = 368 |
| >gnl|CDD|200312 TIGR03689, pup_AAA, proteasome ATPase | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 9e-09
Identities = 54/226 (23%), Positives = 91/226 (40%), Gaps = 78/226 (34%)
Query: 395 EHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFK--GCRSPGKGLLLFGP 452
V + +++ P V + DI GL + + + V P L P++++ G + P KG+LL+GP
Sbjct: 166 TEVEDLVLEEVPDVTYADIGGLGSQIEQIRDAVELPFLHPELYREYGLKPP-KGVLLYGP 224
Query: 453 P-----------------------------------------IGEGEKLVRALFG----V 467
P +GE E+ +R +F
Sbjct: 225 PGCGKTLIAKAVANSLAARIGAEGGGKSYFLNIKGPELLNKYVGETERQIRLIFQRAREK 284
Query: 468 ASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKT---Q 524
AS +P ++F DE+DSL ++ G SS T Q
Sbjct: 285 ASEGRPVIVFFDEMDSLF------------------------RTRGSGVSSDVETTVVPQ 320
Query: 525 FLIEMEGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLP 568
L E++G +S + ++++GA+NR +D A R RL ++ I P
Sbjct: 321 LLAEIDGVES-LDNVIVIGASNREDMIDPAILRPGRLDVKIRIERP 365
|
In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 512 |
| >gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 4e-08
Identities = 67/246 (27%), Positives = 98/246 (39%), Gaps = 79/246 (32%)
Query: 438 KGCRSPGKGLLLFGPP------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPY 491
+ + G L P +GE E +R LF A P++IF+DEID+L
Sbjct: 36 RALANEGAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFIDEIDALAP----- 90
Query: 492 MHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQEL 551
++S + E RR+ Q L M+G G Q++++GATNRP L
Sbjct: 91 -----------------KRSSDQGEVERRVVAQLLALMDGLKRG--QVIVIGATNRPDGL 131
Query: 552 DEAARR--RLTKRLYIPLP------------------------------SSGYSGSDMKN 579
D A RR R + + + LP + G SG+D+
Sbjct: 132 DPAKRRPGRFDREIEVNLPDEAGRLEILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGA 191
Query: 580 LVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRAS---------VSLNE 630
L KEA++ RE R + VT DFE AL +V S V+L++
Sbjct: 192 LAKEAAL---RELRRAIDLVGEYIG-----VTEDDFEEALKKVLPSRGVLFEDEDVTLDD 243
Query: 631 LGIYEE 636
+G EE
Sbjct: 244 IGGLEE 249
|
Length = 494 |
| >gnl|CDD|204202 pfam09336, Vps4_C, Vps4 C terminal oligomerisation domain | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 6e-05
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 607 MQPVTLQDFENALPQVRASVSLNELGIYEEWNKQFG 642
P+T++DF AL + +VS ++L +EE+ +FG
Sbjct: 27 EPPLTMKDFIKALATTKPTVSKDDLEKHEEFTNEFG 62
|
This domain is found at the C terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation. Length = 62 |
| >gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 8e-04
Identities = 36/117 (30%), Positives = 48/117 (41%), Gaps = 38/117 (32%)
Query: 456 EGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEH 515
G LVR LF +A +P V+F+DEIDSL
Sbjct: 68 FGHFLVRLLFELAEKAKPGVLFIDEIDSL------------------------------- 96
Query: 516 ESSRRLKTQFLIEMEGFDSG---SEQILLVGATNRP--QELDEAARRRLTKRLYIPL 567
SR + L +E + E + ++GATNRP +LD A RL R+ IPL
Sbjct: 97 --SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYDRLDIRIVIPL 151
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. Length = 151 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 38.9 bits (90), Expect = 0.002
Identities = 24/115 (20%), Positives = 40/115 (34%), Gaps = 29/115 (25%)
Query: 455 GEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGE 514
G GE +R +A +P V+ +DEI SLL
Sbjct: 61 GSGELRLRLALALARKLKPDVLILDEITSLLD---------------------------- 92
Query: 515 HESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAA-RRRLTKRLYIPLP 568
E L + + + + ++ TN ++L A RRR +R+ + L
Sbjct: 93 AEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLI 147
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 646 | |||
| KOG0738 | 491 | consensus AAA+-type ATPase [Posttranslational modi | 100.0 | |
| COG1222 | 406 | RPT1 ATP-dependent 26S proteasome regulatory subun | 100.0 | |
| KOG0727 | 408 | consensus 26S proteasome regulatory complex, ATPas | 100.0 | |
| KOG0739 | 439 | consensus AAA+-type ATPase [Posttranslational modi | 100.0 | |
| KOG0730 | 693 | consensus AAA+-type ATPase [Posttranslational modi | 100.0 | |
| KOG0733 | 802 | consensus Nuclear AAA ATPase (VCP subfamily) [Post | 100.0 | |
| KOG0736 | 953 | consensus Peroxisome assembly factor 2 containing | 100.0 | |
| KOG0740 | 428 | consensus AAA+-type ATPase [Posttranslational modi | 100.0 | |
| KOG0737 | 386 | consensus AAA+-type ATPase [Posttranslational modi | 100.0 | |
| KOG0726 | 440 | consensus 26S proteasome regulatory complex, ATPas | 100.0 | |
| KOG0733 | 802 | consensus Nuclear AAA ATPase (VCP subfamily) [Post | 100.0 | |
| TIGR01243 | 733 | CDC48 AAA family ATPase, CDC48 subfamily. This sub | 100.0 | |
| KOG0728 | 404 | consensus 26S proteasome regulatory complex, ATPas | 100.0 | |
| KOG0734 | 752 | consensus AAA+-type ATPase containing the peptidas | 100.0 | |
| COG0464 | 494 | SpoVK ATPases of the AAA+ class [Posttranslational | 100.0 | |
| KOG0652 | 424 | consensus 26S proteasome regulatory complex, ATPas | 100.0 | |
| PTZ00454 | 398 | 26S protease regulatory subunit 6B-like protein; P | 100.0 | |
| KOG0729 | 435 | consensus 26S proteasome regulatory complex, ATPas | 100.0 | |
| KOG0735 | 952 | consensus AAA+-type ATPase [Posttranslational modi | 100.0 | |
| PTZ00361 | 438 | 26 proteosome regulatory subunit 4-like protein; P | 100.0 | |
| KOG0731 | 774 | consensus AAA+-type ATPase containing the peptidas | 99.97 | |
| KOG0732 | 1080 | consensus AAA+-type ATPase containing the bromodom | 99.97 | |
| PRK03992 | 389 | proteasome-activating nucleotidase; Provisional | 99.97 | |
| COG0465 | 596 | HflB ATP-dependent Zn proteases [Posttranslational | 99.97 | |
| CHL00195 | 489 | ycf46 Ycf46; Provisional | 99.97 | |
| COG1223 | 368 | Predicted ATPase (AAA+ superfamily) [General funct | 99.96 | |
| TIGR03689 | 512 | pup_AAA proteasome ATPase. In the Actinobacteria, | 99.96 | |
| KOG0651 | 388 | consensus 26S proteasome regulatory complex, ATPas | 99.96 | |
| KOG0730 | 693 | consensus AAA+-type ATPase [Posttranslational modi | 99.96 | |
| TIGR01242 | 364 | 26Sp45 26S proteasome subunit P45 family. Many pro | 99.96 | |
| TIGR01241 | 495 | FtsH_fam ATP-dependent metalloprotease FtsH. HflB( | 99.95 | |
| KOG0741 | 744 | consensus AAA+-type ATPase [Posttranslational modi | 99.94 | |
| CHL00176 | 638 | ftsH cell division protein; Validated | 99.93 | |
| TIGR01243 | 733 | CDC48 AAA family ATPase, CDC48 subfamily. This sub | 99.93 | |
| PRK10733 | 644 | hflB ATP-dependent metalloprotease; Reviewed | 99.92 | |
| CHL00206 | 2281 | ycf2 Ycf2; Provisional | 99.9 | |
| PLN00020 | 413 | ribulose bisphosphate carboxylase/oxygenase activa | 99.83 | |
| KOG0743 | 457 | consensus AAA+-type ATPase [Posttranslational modi | 99.61 | |
| COG0464 | 494 | SpoVK ATPases of the AAA+ class [Posttranslational | 99.57 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 99.54 | |
| KOG0744 | 423 | consensus AAA+-type ATPase [Posttranslational modi | 99.44 | |
| CHL00181 | 287 | cbbX CbbX; Provisional | 99.43 | |
| KOG0742 | 630 | consensus AAA+-type ATPase [Posttranslational modi | 99.41 | |
| TIGR02880 | 284 | cbbX_cfxQ probable Rubsico expression protein CbbX | 99.29 | |
| TIGR02881 | 261 | spore_V_K stage V sporulation protein K. Members o | 99.28 | |
| TIGR02639 | 731 | ClpA ATP-dependent Clp protease ATP-binding subuni | 99.16 | |
| KOG0736 | 953 | consensus Peroxisome assembly factor 2 containing | 99.15 | |
| KOG0735 | 952 | consensus AAA+-type ATPase [Posttranslational modi | 99.07 | |
| TIGR00763 | 775 | lon ATP-dependent protease La. This protein is ind | 98.94 | |
| PRK11034 | 758 | clpA ATP-dependent Clp protease ATP-binding subuni | 98.91 | |
| PRK00080 | 328 | ruvB Holliday junction DNA helicase RuvB; Reviewed | 98.88 | |
| TIGR00635 | 305 | ruvB Holliday junction DNA helicase, RuvB subunit. | 98.88 | |
| PRK10865 | 857 | protein disaggregation chaperone; Provisional | 98.76 | |
| TIGR03345 | 852 | VI_ClpV1 type VI secretion ATPase, ClpV1 family. M | 98.7 | |
| TIGR02902 | 531 | spore_lonB ATP-dependent protease LonB. Members of | 98.68 | |
| PRK07940 | 394 | DNA polymerase III subunit delta'; Validated | 98.66 | |
| CHL00095 | 821 | clpC Clp protease ATP binding subunit | 98.64 | |
| TIGR03346 | 852 | chaperone_ClpB ATP-dependent chaperone ClpB. Membe | 98.6 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 98.48 | |
| PRK14962 | 472 | DNA polymerase III subunits gamma and tau; Provisi | 98.4 | |
| PF09336 | 62 | Vps4_C: Vps4 C terminal oligomerisation domain; In | 98.38 | |
| PRK14961 | 363 | DNA polymerase III subunits gamma and tau; Provisi | 98.35 | |
| TIGR02397 | 355 | dnaX_nterm DNA polymerase III, subunit gamma and t | 98.34 | |
| PRK04195 | 482 | replication factor C large subunit; Provisional | 98.31 | |
| PHA02544 | 316 | 44 clamp loader, small subunit; Provisional | 98.28 | |
| PRK14970 | 367 | DNA polymerase III subunits gamma and tau; Provisi | 98.26 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 98.25 | |
| PF05496 | 233 | RuvB_N: Holliday junction DNA helicase ruvB N-term | 98.25 | |
| PRK14963 | 504 | DNA polymerase III subunits gamma and tau; Provisi | 98.22 | |
| PRK10787 | 784 | DNA-binding ATP-dependent protease La; Provisional | 98.2 | |
| PRK12402 | 337 | replication factor C small subunit 2; Reviewed | 98.19 | |
| PRK13342 | 413 | recombination factor protein RarA; Reviewed | 98.18 | |
| PRK07133 | 725 | DNA polymerase III subunits gamma and tau; Validat | 98.16 | |
| KOG0740 | 428 | consensus AAA+-type ATPase [Posttranslational modi | 98.16 | |
| COG2256 | 436 | MGS1 ATPase related to the helicase subunit of the | 98.15 | |
| PRK14956 | 484 | DNA polymerase III subunits gamma and tau; Provisi | 98.15 | |
| PRK05563 | 559 | DNA polymerase III subunits gamma and tau; Validat | 98.13 | |
| PRK12323 | 700 | DNA polymerase III subunits gamma and tau; Provisi | 98.13 | |
| KOG0741 | 744 | consensus AAA+-type ATPase [Posttranslational modi | 98.1 | |
| TIGR00390 | 441 | hslU ATP-dependent protease HslVU, ATPase subunit. | 98.1 | |
| PRK07003 | 830 | DNA polymerase III subunits gamma and tau; Validat | 98.09 | |
| PRK08691 | 709 | DNA polymerase III subunits gamma and tau; Validat | 98.09 | |
| PRK05201 | 443 | hslU ATP-dependent protease ATP-binding subunit Hs | 98.07 | |
| PRK06645 | 507 | DNA polymerase III subunits gamma and tau; Validat | 98.05 | |
| PRK05342 | 412 | clpX ATP-dependent protease ATP-binding subunit Cl | 98.05 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 98.04 | |
| PLN03025 | 319 | replication factor C subunit; Provisional | 98.02 | |
| PRK14964 | 491 | DNA polymerase III subunits gamma and tau; Provisi | 98.01 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 98.0 | |
| PRK14960 | 702 | DNA polymerase III subunits gamma and tau; Provisi | 97.99 | |
| PRK14969 | 527 | DNA polymerase III subunits gamma and tau; Provisi | 97.99 | |
| PRK14958 | 509 | DNA polymerase III subunits gamma and tau; Provisi | 97.96 | |
| PRK06305 | 451 | DNA polymerase III subunits gamma and tau; Validat | 97.96 | |
| COG2255 | 332 | RuvB Holliday junction resolvasome, helicase subun | 97.95 | |
| PRK14953 | 486 | DNA polymerase III subunits gamma and tau; Provisi | 97.94 | |
| PRK14959 | 624 | DNA polymerase III subunits gamma and tau; Provisi | 97.93 | |
| PRK00440 | 319 | rfc replication factor C small subunit; Reviewed | 97.93 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 97.93 | |
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 97.93 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 97.9 | |
| PRK14949 | 944 | DNA polymerase III subunits gamma and tau; Provisi | 97.89 | |
| TIGR02903 | 615 | spore_lon_C ATP-dependent protease, Lon family. Me | 97.88 | |
| PRK14951 | 618 | DNA polymerase III subunits gamma and tau; Provisi | 97.87 | |
| PRK08451 | 535 | DNA polymerase III subunits gamma and tau; Validat | 97.86 | |
| PRK14957 | 546 | DNA polymerase III subunits gamma and tau; Provisi | 97.84 | |
| PRK14955 | 397 | DNA polymerase III subunits gamma and tau; Provisi | 97.82 | |
| PRK07994 | 647 | DNA polymerase III subunits gamma and tau; Validat | 97.78 | |
| PRK14965 | 576 | DNA polymerase III subunits gamma and tau; Provisi | 97.78 | |
| KOG2004 | 906 | consensus Mitochondrial ATP-dependent protease PIM | 97.77 | |
| TIGR00382 | 413 | clpX endopeptidase Clp ATP-binding regulatory subu | 97.77 | |
| PF05673 | 249 | DUF815: Protein of unknown function (DUF815); Inte | 97.72 | |
| KOG0989 | 346 | consensus Replication factor C, subunit RFC4 [Repl | 97.72 | |
| PRK14950 | 585 | DNA polymerase III subunits gamma and tau; Provisi | 97.71 | |
| PRK07764 | 824 | DNA polymerase III subunits gamma and tau; Validat | 97.71 | |
| PRK12422 | 445 | chromosomal replication initiation protein; Provis | 97.7 | |
| PRK05896 | 605 | DNA polymerase III subunits gamma and tau; Validat | 97.69 | |
| PRK11331 | 459 | 5-methylcytosine-specific restriction enzyme subun | 97.69 | |
| PRK14954 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 97.65 | |
| PRK11034 | 758 | clpA ATP-dependent Clp protease ATP-binding subuni | 97.63 | |
| PRK14948 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 97.62 | |
| PTZ00112 | 1164 | origin recognition complex 1 protein; Provisional | 97.6 | |
| PRK14952 | 584 | DNA polymerase III subunits gamma and tau; Provisi | 97.59 | |
| PRK06647 | 563 | DNA polymerase III subunits gamma and tau; Validat | 97.55 | |
| PRK09111 | 598 | DNA polymerase III subunits gamma and tau; Validat | 97.55 | |
| PRK14971 | 614 | DNA polymerase III subunits gamma and tau; Provisi | 97.53 | |
| PRK05564 | 313 | DNA polymerase III subunit delta'; Validated | 97.5 | |
| TIGR00678 | 188 | holB DNA polymerase III, delta' subunit. At positi | 97.41 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 97.41 | |
| TIGR02639 | 731 | ClpA ATP-dependent Clp protease ATP-binding subuni | 97.39 | |
| PRK13341 | 725 | recombination factor protein RarA/unknown domain f | 97.37 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 97.36 | |
| CHL00081 | 350 | chlI Mg-protoporyphyrin IX chelatase | 97.35 | |
| COG0466 | 782 | Lon ATP-dependent Lon protease, bacterial type [Po | 97.34 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 97.34 | |
| PRK13407 | 334 | bchI magnesium chelatase subunit I; Provisional | 97.26 | |
| PF07728 | 139 | AAA_5: AAA domain (dynein-related subfamily); Inte | 97.2 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 97.19 | |
| PRK09112 | 351 | DNA polymerase III subunit delta'; Validated | 97.12 | |
| PRK07399 | 314 | DNA polymerase III subunit delta'; Validated | 97.09 | |
| KOG2028 | 554 | consensus ATPase related to the helicase subunit o | 96.98 | |
| TIGR00764 | 608 | lon_rel lon-related putative ATP-dependent proteas | 96.97 | |
| COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase | 96.94 | |
| TIGR02640 | 262 | gas_vesic_GvpN gas vesicle protein GvpN. Members o | 96.94 | |
| COG0542 | 786 | clpA ATP-binding subunits of Clp protease and DnaK | 96.91 | |
| PRK08727 | 233 | hypothetical protein; Validated | 96.86 | |
| PRK07471 | 365 | DNA polymerase III subunit delta'; Validated | 96.85 | |
| TIGR03345 | 852 | VI_ClpV1 type VI secretion ATPase, ClpV1 family. M | 96.84 | |
| PRK08058 | 329 | DNA polymerase III subunit delta'; Validated | 96.83 | |
| PRK14086 | 617 | dnaA chromosomal replication initiation protein; P | 96.75 | |
| PRK06620 | 214 | hypothetical protein; Validated | 96.75 | |
| CHL00095 | 821 | clpC Clp protease ATP binding subunit | 96.68 | |
| TIGR03346 | 852 | chaperone_ClpB ATP-dependent chaperone ClpB. Membe | 96.67 | |
| PF13177 | 162 | DNA_pol3_delta2: DNA polymerase III, delta subunit | 96.65 | |
| COG2812 | 515 | DnaX DNA polymerase III, gamma/tau subunits [DNA r | 96.63 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 96.62 | |
| PRK06964 | 342 | DNA polymerase III subunit delta'; Validated | 96.53 | |
| PF07724 | 171 | AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR | 96.5 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 96.49 | |
| COG0714 | 329 | MoxR-like ATPases [General function prediction onl | 96.39 | |
| PHA02244 | 383 | ATPase-like protein | 96.38 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 96.37 | |
| TIGR02030 | 337 | BchI-ChlI magnesium chelatase ATPase subunit I. Th | 96.35 | |
| COG1220 | 444 | HslU ATP-dependent protease HslVU (ClpYQ), ATPase | 96.22 | |
| COG0470 | 325 | HolB ATPase involved in DNA replication [DNA repli | 96.2 | |
| TIGR02442 | 633 | Cob-chelat-sub cobaltochelatase subunit. A number | 96.09 | |
| PRK13531 | 498 | regulatory ATPase RavA; Provisional | 96.05 | |
| TIGR00368 | 499 | Mg chelatase-related protein. The N-terminal end m | 96.05 | |
| PRK09087 | 226 | hypothetical protein; Validated | 95.97 | |
| PRK10865 | 857 | protein disaggregation chaperone; Provisional | 95.93 | |
| PRK05707 | 328 | DNA polymerase III subunit delta'; Validated | 95.91 | |
| PRK07993 | 334 | DNA polymerase III subunit delta'; Validated | 95.27 | |
| PRK08769 | 319 | DNA polymerase III subunit delta'; Validated | 95.13 | |
| TIGR01650 | 327 | PD_CobS cobaltochelatase, CobS subunit. This model | 94.97 | |
| smart00350 | 509 | MCM minichromosome maintenance proteins. | 94.92 | |
| COG0593 | 408 | DnaA ATPase involved in DNA replication initiation | 94.9 | |
| COG2607 | 287 | Predicted ATPase (AAA+ superfamily) [General funct | 94.79 | |
| TIGR00602 | 637 | rad24 checkpoint protein rad24. This family is bas | 94.73 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 94.7 | |
| COG0542 | 786 | clpA ATP-binding subunits of Clp protease and DnaK | 94.59 | |
| KOG0990 | 360 | consensus Replication factor C, subunit RFC5 [Repl | 94.43 | |
| PRK06871 | 325 | DNA polymerase III subunit delta'; Validated | 94.14 | |
| TIGR02031 | 589 | BchD-ChlD magnesium chelatase ATPase subunit D. Th | 94.04 | |
| PRK06090 | 319 | DNA polymerase III subunit delta'; Validated | 94.02 | |
| COG0606 | 490 | Predicted ATPase with chaperone activity [Posttran | 94.01 | |
| KOG1969 | 877 | consensus DNA replication checkpoint protein CHL12 | 93.94 | |
| PRK04132 | 846 | replication factor C small subunit; Provisional | 93.29 | |
| PRK09862 | 506 | putative ATP-dependent protease; Provisional | 93.16 | |
| PRK07276 | 290 | DNA polymerase III subunit delta'; Validated | 93.1 | |
| PRK11608 | 326 | pspF phage shock protein operon transcriptional ac | 92.93 | |
| COG1219 | 408 | ClpX ATP-dependent protease Clp, ATPase subunit [P | 92.0 | |
| TIGR02974 | 329 | phageshock_pspF psp operon transcriptional activat | 91.7 | |
| TIGR01817 | 534 | nifA Nif-specific regulatory protein. This model r | 91.59 | |
| PRK15424 | 538 | propionate catabolism operon regulatory protein Pr | 91.02 | |
| PRK05917 | 290 | DNA polymerase III subunit delta'; Validated | 90.79 | |
| TIGR02329 | 526 | propionate_PrpR propionate catabolism operon regul | 90.73 | |
| TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTE | 90.7 | |
| PF03969 | 362 | AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 | 90.44 | |
| PTZ00111 | 915 | DNA replication licensing factor MCM4; Provisional | 89.86 | |
| KOG0745 | 564 | consensus Putative ATP-dependent Clp-type protease | 88.97 | |
| PF00158 | 168 | Sigma54_activat: Sigma-54 interaction domain; Inte | 88.96 | |
| PRK05022 | 509 | anaerobic nitric oxide reductase transcription reg | 88.94 | |
| PRK15429 | 686 | formate hydrogenlyase transcriptional activator Fh | 88.78 | |
| KOG2228 | 408 | consensus Origin recognition complex, subunit 4 [R | 88.69 | |
| PF12775 | 272 | AAA_7: P-loop containing dynein motor region D3; P | 87.76 | |
| KOG1051 | 898 | consensus Chaperone HSP104 and related ATP-depende | 87.66 | |
| PF14532 | 138 | Sigma54_activ_2: Sigma-54 interaction domain; PDB: | 87.0 | |
| KOG0482 | 721 | consensus DNA replication licensing factor, MCM7 c | 86.84 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 86.68 | |
| COG1221 | 403 | PspF Transcriptional regulators containing an AAA- | 86.48 | |
| PRK10820 | 520 | DNA-binding transcriptional regulator TyrR; Provis | 86.41 | |
| PRK11388 | 638 | DNA-binding transcriptional regulator DhaR; Provis | 85.58 | |
| KOG2227 | 529 | consensus Pre-initiation complex, subunit CDC6, AA | 85.42 | |
| PF07726 | 131 | AAA_3: ATPase family associated with various cellu | 85.04 | |
| PRK06526 | 254 | transposase; Provisional | 84.97 | |
| PRK05818 | 261 | DNA polymerase III subunit delta'; Validated | 83.98 | |
| smart00763 | 361 | AAA_PrkA PrkA AAA domain. This is a family of PrkA | 83.04 | |
| PRK08699 | 325 | DNA polymerase III subunit delta'; Validated | 82.8 | |
| KOG1514 | 767 | consensus Origin recognition complex, subunit 1, a | 82.03 | |
| TIGR01618 | 220 | phage_P_loop phage nucleotide-binding protein. Thi | 81.37 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 81.24 | |
| PRK13406 | 584 | bchD magnesium chelatase subunit D; Provisional | 81.11 | |
| PRK08116 | 268 | hypothetical protein; Validated | 80.05 |
| >KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-52 Score=442.82 Aligned_cols=234 Identities=50% Similarity=0.858 Sum_probs=214.9
Q ss_pred hhhhHHHHhhhhcccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCC---------------
Q 006411 389 LEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP--------------- 453 (646)
Q Consensus 389 ~ep~~~~~v~~~i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPP--------------- 453 (646)
++..+++.+...|++..|+|+|+||.|++++|+-|+|+|.+|+..|++|+++++||+||||+|||
T Consensus 190 ~d~~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc 269 (491)
T KOG0738|consen 190 YDADLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATEC 269 (491)
T ss_pred chHHHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhh
Confidence 44567888889999999999999999999999999999999999999999999999999999999
Q ss_pred ----------------CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchh
Q 006411 454 ----------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHES 517 (646)
Q Consensus 454 ----------------vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~ 517 (646)
-|++||+||.+|+.|+.++|++|||||||+|++ +|++.++|+.
T Consensus 270 ~tTFFNVSsstltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs---------------------~RG~s~EHEa 328 (491)
T KOG0738|consen 270 GTTFFNVSSSTLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCS---------------------QRGGSSEHEA 328 (491)
T ss_pred cCeEEEechhhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHh---------------------cCCCccchhH
Confidence 899999999999999999999999999999999 8889999999
Q ss_pred hHHHHHHHHHHHcCCCCCCCc---EEEEEecCCCCcCCHHHHhccccEEEeCCCCC------------------------
Q 006411 518 SRRLKTQFLIEMEGFDSGSEQ---ILLVGATNRPQELDEAARRRLTKRLYIPLPSS------------------------ 570 (646)
Q Consensus 518 s~rilneLL~eLDGl~~~~~~---VlVIaATNrPd~LDpALlRRFDr~I~IplPd~------------------------ 570 (646)
++|++++||.||||+....++ |+|++|||.||+||+|++|||.++||||+||.
T Consensus 329 SRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~ 408 (491)
T KOG0738|consen 329 SRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLED 408 (491)
T ss_pred HHHHHHHHHHHhhccccccccceeEEEEeccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHH
Confidence 999999999999999875556 99999999999999999999999999999986
Q ss_pred ------CCcHHHHHHHHHHHhhhHHHHHHHhch--hhhhhccc-CCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHh
Q 006411 571 ------GYSGSDMKNLVKEASMGPLREALRQGI--EITRLQKE-DMQPVTLQDFENALPQVRASVSLNELGIYEEWNKQF 641 (646)
Q Consensus 571 ------GySGADL~~Lc~eAa~~Airr~l~~~~--~~~~~~~~-~~~~Vt~eDFe~AL~kvrPSvs~~dl~~ye~w~k~f 641 (646)
||||+||.++|++|+|+++||.+.... ++..+.++ -..||+.+||+.|+.+++||++..++..||+|..+|
T Consensus 409 lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pSvs~~d~~k~ekW~~ef 488 (491)
T KOG0738|consen 409 LAERSEGYSGADITNVCREASMMAMRRKIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPSVSAADLEKYEKWMDEF 488 (491)
T ss_pred HHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcCCCHHHHHHHHHHHHHh
Confidence 999999999999999999998765321 12222222 226899999999999999999999999999999999
Q ss_pred CC
Q 006411 642 GS 643 (646)
Q Consensus 642 g~ 643 (646)
|+
T Consensus 489 GS 490 (491)
T KOG0738|consen 489 GS 490 (491)
T ss_pred cC
Confidence 97
|
|
| >COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-50 Score=424.52 Aligned_cols=252 Identities=33% Similarity=0.563 Sum_probs=221.5
Q ss_pred CcccccccccccCCCCCcC-----ccccccccchhhh-hhhhhh-hhhhcccccceeecccccchhhhhhccCCCCChhH
Q 006411 312 RGVRGSFVPPIRNNGSNVG-----NMTSRISVYVLTI-MFMSIS-HTHAHNYEHVQVLIPFSSFNYSLEMLCGPDGELPE 384 (646)
Q Consensus 312 rg~~g~fv~pi~~~~~~~~-----~~~~~i~~~~~~~-~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~ 384 (646)
.-++|++++.++.++.++. ++++++.+.++.. +.++.. ++|.+++..+.+|++..+..-
T Consensus 72 pl~vg~v~e~id~~~~iVks~~g~~~vV~i~~~vd~~~L~pG~rVal~~~s~~Iv~vLp~~~Dp~V-------------- 137 (406)
T COG1222 72 PLIVGTVLEVLDDGRAIVKSSTGPKFVVNILSFVDRDLLEPGMRVALNRDSYSIVRVLPPEVDPRV-------------- 137 (406)
T ss_pred CceEEEEEEEcCCceEEEEeCCCCeEEEeccCCcCHHHcCCCCEEEEcCCcceeeeeCCCccCchh--------------
Confidence 4678999999998876543 5799999999966 899888 999999999999998744211
Q ss_pred HhhhhhhhHHHHhhhhcccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC----------
Q 006411 385 KLRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP---------- 453 (646)
Q Consensus 385 ~lk~~ep~~~~~v~~~i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP---------- 453 (646)
...-..+.|+|||+|||||++++++|+|.|.+||++|++|..+| .||+||||||||
T Consensus 138 -------------~~M~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkA 204 (406)
T COG1222 138 -------------SVMEVEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKA 204 (406)
T ss_pred -------------heeeeccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHH
Confidence 11125689999999999999999999999999999999999987 899999999999
Q ss_pred ---------------------CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCC
Q 006411 454 ---------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSD 512 (646)
Q Consensus 454 ---------------------vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~ 512 (646)
+||+.++||++|..|+.++||||||||||+|+. +|++...
T Consensus 205 VA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~----------------kR~d~~t--- 265 (406)
T COG1222 205 VANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGA----------------KRFDSGT--- 265 (406)
T ss_pred HHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhc----------------ccccCCC---
Confidence 999999999999999999999999999999998 3444322
Q ss_pred CCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC--------------------
Q 006411 513 GEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS-------------------- 570 (646)
Q Consensus 513 ~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~-------------------- 570 (646)
+.....+|++.+||+|||||++ .++|-||||||||+.|||||+| ||||.|+||+||.
T Consensus 266 ~gDrEVQRTmleLL~qlDGFD~-~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dv 344 (406)
T COG1222 266 SGDREVQRTMLELLNQLDGFDP-RGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDV 344 (406)
T ss_pred CchHHHHHHHHHHHHhccCCCC-CCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCc
Confidence 2334568999999999999998 7899999999999999999999 9999999999986
Q ss_pred ----------CCcHHHHHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCC
Q 006411 571 ----------GYSGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRA 624 (646)
Q Consensus 571 ----------GySGADL~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrP 624 (646)
|||||||+++|.+|+|.|+|+. ...|+++||+.|++++--
T Consensus 345 d~e~la~~~~g~sGAdlkaictEAGm~AiR~~--------------R~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 345 DLELLARLTEGFSGADLKAICTEAGMFAIRER--------------RDEVTMEDFLKAVEKVVK 394 (406)
T ss_pred CHHHHHHhcCCCchHHHHHHHHHHhHHHHHhc--------------cCeecHHHHHHHHHHHHh
Confidence 9999999999999999999983 356999999999999854
|
|
| >KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-49 Score=399.86 Aligned_cols=250 Identities=37% Similarity=0.585 Sum_probs=226.4
Q ss_pred CcccccccccccCCCCCcC-----ccccccccchhhh-hhhhhh-hhhhcccccceeecccccchhhhhhccCCCCChhH
Q 006411 312 RGVRGSFVPPIRNNGSNVG-----NMTSRISVYVLTI-MFMSIS-HTHAHNYEHVQVLIPFSSFNYSLEMLCGPDGELPE 384 (646)
Q Consensus 312 rg~~g~fv~pi~~~~~~~~-----~~~~~i~~~~~~~-~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~ 384 (646)
.-++|+|+++|++|.+++| ||++||.+++|.. ++|+.+ ++|.|++..|++|+|+.+ +++.||.
T Consensus 76 plvigqfle~vdqnt~ivgsttgsny~vrilstidrellkps~svalhrhsnalvdvlppead--ssi~ml~-------- 145 (408)
T KOG0727|consen 76 PLVIGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPSASVALHRHSNALVDVLPPEAD--SSISMLG-------- 145 (408)
T ss_pred chHHHHHHHhhhccCceeecccCCceEEeehhhhhHHHcCCccchhhhhcccceeeccCCccc--ccccccC--------
Confidence 4689999999999999976 7999999999977 799988 999999999999999955 2444441
Q ss_pred HhhhhhhhHHHHhhhhcccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC----------
Q 006411 385 KLRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP---------- 453 (646)
Q Consensus 385 ~lk~~ep~~~~~v~~~i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP---------- 453 (646)
.+++|+|+|.||||++-+|++|+|+|.+||.+.++|+.++ .||+||||||||
T Consensus 146 -----------------~~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~ka 208 (408)
T KOG0727|consen 146 -----------------PDEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKA 208 (408)
T ss_pred -----------------CCCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHH
Confidence 3578999999999999999999999999999999999987 899999999999
Q ss_pred ---------------------CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCC
Q 006411 454 ---------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSD 512 (646)
Q Consensus 454 ---------------------vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~ 512 (646)
.||+.++||++|..|+.++|+||||||||+|+. |||+++.+.
T Consensus 209 va~~t~a~firvvgsefvqkylgegprmvrdvfrlakenapsiifideidaiat----------------krfdaqtga- 271 (408)
T KOG0727|consen 209 VANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIAT----------------KRFDAQTGA- 271 (408)
T ss_pred HhhccchheeeeccHHHHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhh----------------hhccccccc-
Confidence 899999999999999999999999999999998 788886643
Q ss_pred CCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC--------------------
Q 006411 513 GEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS-------------------- 570 (646)
Q Consensus 513 ~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~-------------------- 570 (646)
....+|++-+||++|||+++ ..+|-||+||||.+.|||||+| |+|+.|+||+||.
T Consensus 272 --drevqril~ellnqmdgfdq-~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~v 348 (408)
T KOG0727|consen 272 --DREVQRILIELLNQMDGFDQ-TTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEV 348 (408)
T ss_pred --cHHHHHHHHHHHHhccCcCc-ccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCccc
Confidence 34568999999999999998 6799999999999999999999 9999999999986
Q ss_pred ----------CCcHHHHHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhc
Q 006411 571 ----------GYSGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQV 622 (646)
Q Consensus 571 ----------GySGADL~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kv 622 (646)
..||+||..+|++|.|.|+|+. ...|...||++|.+.+
T Consensus 349 dle~~v~rpdkis~adi~aicqeagm~avr~n--------------ryvvl~kd~e~ay~~~ 396 (408)
T KOG0727|consen 349 DLEDLVARPDKISGADINAICQEAGMLAVREN--------------RYVVLQKDFEKAYKTV 396 (408)
T ss_pred CHHHHhcCccccchhhHHHHHHHHhHHHHHhc--------------ceeeeHHHHHHHHHhh
Confidence 6899999999999999999972 3568899999999875
|
|
| >KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-48 Score=395.57 Aligned_cols=230 Identities=44% Similarity=0.791 Sum_probs=207.8
Q ss_pred hHHHHhhhhcccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCC------------------
Q 006411 392 RLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP------------------ 453 (646)
Q Consensus 392 ~~~~~v~~~i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPP------------------ 453 (646)
.+...++..|+.++|+|.|+||+||+.+|+.|+|+|++|+++|++|.+.+.|++||||||||
T Consensus 114 KLr~~L~sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnST 193 (439)
T KOG0739|consen 114 KLRSALNSAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANST 193 (439)
T ss_pred HHHHHhhhhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCc
Confidence 45566788899999999999999999999999999999999999999999999999999999
Q ss_pred -------------CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHH
Q 006411 454 -------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRR 520 (646)
Q Consensus 454 -------------vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~r 520 (646)
.||+|++|+.+|+.||.+.|+||||||||++++ .| +.++++.++|
T Consensus 194 FFSvSSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg---------------------~r-~enEseasRR 251 (439)
T KOG0739|consen 194 FFSVSSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCG---------------------SR-SENESEASRR 251 (439)
T ss_pred eEEeehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhcc---------------------CC-CCCchHHHHH
Confidence 999999999999999999999999999999987 44 6788889999
Q ss_pred HHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC------------------------------
Q 006411 521 LKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS------------------------------ 570 (646)
Q Consensus 521 ilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~------------------------------ 570 (646)
|+++||.||.|+...+++|+|+||||-||.||.|++|||+++||||+|+.
T Consensus 252 IKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kT 331 (439)
T KOG0739|consen 252 IKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKT 331 (439)
T ss_pred HHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhc
Confidence 99999999999998888999999999999999999999999999999975
Q ss_pred -CCcHHHHHHHHHHHhhhHHHHHHHhc--------h---hhhh---------------------hcccCCCCccHHHHHH
Q 006411 571 -GYSGSDMKNLVKEASMGPLREALRQG--------I---EITR---------------------LQKEDMQPVTLQDFEN 617 (646)
Q Consensus 571 -GySGADL~~Lc~eAa~~Airr~l~~~--------~---~~~~---------------------~~~~~~~~Vt~eDFe~ 617 (646)
||||+||.-+|++|.|+++|+..... . +... ..+.-.++|++.||+.
T Consensus 332 eGySGsDisivVrDalmePvRkvqsAthFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~~k 411 (439)
T KOG0739|consen 332 EGYSGSDISIVVRDALMEPVRKVQSATHFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDFLK 411 (439)
T ss_pred CCCCcCceEEEehhhhhhhHHHhhhhhhhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhccCCCccHHHHHH
Confidence 99999999999999999999864210 0 0000 0112346899999999
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHHhCC
Q 006411 618 ALPQVRASVSLNELGIYEEWNKQFGS 643 (646)
Q Consensus 618 AL~kvrPSvs~~dl~~ye~w~k~fg~ 643 (646)
+|.+++|+|+..||..+++|.+.||.
T Consensus 412 ~l~~tkPTvn~~Dl~k~~~Ft~dFGq 437 (439)
T KOG0739|consen 412 SLSRTKPTVNEDDLLKHEKFTEDFGQ 437 (439)
T ss_pred HHhhcCCCCCHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999995
|
|
| >KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-47 Score=418.29 Aligned_cols=256 Identities=36% Similarity=0.605 Sum_probs=224.6
Q ss_pred hhhhhhhhhhhhcccccceeecccccchhhhhhccCCCCChhHHhhhhhhhHHHHhhhhcccCCCCcccccccChHHHHH
Q 006411 342 TIMFMSISHTHAHNYEHVQVLIPFSSFNYSLEMLCGPDGELPEKLRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKK 421 (646)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~lk~~ep~~~~~v~~~i~~~~p~VsfdDIgGle~~K~ 421 (646)
..+......+|.|-+.++..|+.+.+....-+ ....+..++..+.|... ++++-+.|+|+|+||||++++|.
T Consensus 373 ~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~----~~~~~~~A~~~i~psa~----Re~~ve~p~v~W~dIGGlE~lK~ 444 (693)
T KOG0730|consen 373 VDLEDIAVSTHGYVGADLAALCREASLQATRR----TLEIFQEALMGIRPSAL----REILVEMPNVSWDDIGGLEELKR 444 (693)
T ss_pred hhHHHHHHHccchhHHHHHHHHHHHHHHHhhh----hHHHHHHHHhcCCchhh----hheeccCCCCChhhccCHHHHHH
Confidence 44555667888888887776665554333221 33567778888877765 45567899999999999999999
Q ss_pred HHHHHHHhhccCccccccCC-CCCccccccCCC-------------------------------CchHHHHHHHHHHHhh
Q 006411 422 CVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP-------------------------------IGEGEKLVRALFGVAS 469 (646)
Q Consensus 422 ~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP-------------------------------vGesek~Vr~lF~~Ar 469 (646)
+|++.|+||+++|+.|.+++ .||+|||||||| +|++|+.|+.+|+.|+
T Consensus 445 elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR 524 (693)
T KOG0730|consen 445 ELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKAR 524 (693)
T ss_pred HHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHh
Confidence 99999999999999999998 999999999999 9999999999999999
Q ss_pred hcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCC
Q 006411 470 CRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQ 549 (646)
Q Consensus 470 ~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd 549 (646)
..+||||||||||+++. +|+ +..++...|++++||++|||+.. ..+|+||||||||+
T Consensus 525 ~~aP~IiFfDEiDsi~~---------------------~R~-g~~~~v~~RVlsqLLtEmDG~e~-~k~V~ViAATNRpd 581 (693)
T KOG0730|consen 525 QVAPCIIFFDEIDALAG---------------------SRG-GSSSGVTDRVLSQLLTEMDGLEA-LKNVLVIAATNRPD 581 (693)
T ss_pred hcCCeEEehhhHHhHhh---------------------ccC-CCccchHHHHHHHHHHHcccccc-cCcEEEEeccCChh
Confidence 99999999999999998 665 33447889999999999999998 57899999999999
Q ss_pred cCCHHHHh--ccccEEEeCCCCC------------------------------CCcHHHHHHHHHHHhhhHHHHHHHhch
Q 006411 550 ELDEAARR--RLTKRLYIPLPSS------------------------------GYSGSDMKNLVKEASMGPLREALRQGI 597 (646)
Q Consensus 550 ~LDpALlR--RFDr~I~IplPd~------------------------------GySGADL~~Lc~eAa~~Airr~l~~~~ 597 (646)
.||+|++| |||+.||||+||. |||||||..+|++|++.|+++.++
T Consensus 582 ~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~--- 658 (693)
T KOG0730|consen 582 MIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIE--- 658 (693)
T ss_pred hcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcc---
Confidence 99999999 9999999999985 999999999999999999998643
Q ss_pred hhhhhcccCCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 006411 598 EITRLQKEDMQPVTLQDFENALPQVRASVSLNELGIYEEWNKQ 640 (646)
Q Consensus 598 ~~~~~~~~~~~~Vt~eDFe~AL~kvrPSvs~~dl~~ye~w~k~ 640 (646)
...|+.+||++|++.++||++..+++.|++|.+.
T Consensus 659 ---------a~~i~~~hf~~al~~~r~s~~~~~~~~Ye~fa~~ 692 (693)
T KOG0730|consen 659 ---------ATEITWQHFEEALKAVRPSLTSELLEKYEDFAAR 692 (693)
T ss_pred ---------cccccHHHHHHHHHhhcccCCHHHHHHHHHHhhc
Confidence 3668999999999999999999999999999764
|
|
| >KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-46 Score=406.98 Aligned_cols=242 Identities=37% Similarity=0.592 Sum_probs=212.9
Q ss_pred hccCCCCChhHHhhhhhhhHHHHhhhhcccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCC
Q 006411 374 MLCGPDGELPEKLRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGP 452 (646)
Q Consensus 374 ~l~~~~~~~~~~lk~~ep~~~~~v~~~i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGP 452 (646)
-|+-...+|.++|..++|... .+.....|+|+|+||||+++++.+|..+|.+|+++|++|+.+| .+|.|||||||
T Consensus 478 ~L~i~~eDF~~Al~~iQPSak----REGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GP 553 (802)
T KOG0733|consen 478 GLSIKFEDFEEALSKIQPSAK----REGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGP 553 (802)
T ss_pred cceecHHHHHHHHHhcCcchh----cccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCC
Confidence 344445678889999998774 5777889999999999999999999999999999999999987 78999999999
Q ss_pred C-------------------------------CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhh
Q 006411 453 P-------------------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFC 501 (646)
Q Consensus 453 P-------------------------------vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~ 501 (646)
| +||+|+.||.+|..||..+||||||||||+|++
T Consensus 554 PGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p--------------- 618 (802)
T KOG0733|consen 554 PGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVP--------------- 618 (802)
T ss_pred CCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCc---------------
Confidence 9 999999999999999999999999999999998
Q ss_pred hhhhccccCCCCCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC---------
Q 006411 502 LKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS--------- 570 (646)
Q Consensus 502 ~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~--------- 570 (646)
+| +++..+.+.|++||||++|||+.. +.+|+|||||||||.||||+|| |||+.+||++|+.
T Consensus 619 ------~R-~~~~s~~s~RvvNqLLtElDGl~~-R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~ 690 (802)
T KOG0733|consen 619 ------RR-SDEGSSVSSRVVNQLLTELDGLEE-RRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKT 690 (802)
T ss_pred ------cc-CCCCchhHHHHHHHHHHHhccccc-ccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHH
Confidence 55 445577889999999999999987 6799999999999999999999 9999999999975
Q ss_pred -------------------------CCcHHHHHHHHHHHhhhHHHHHHHhchhhhh-hc-ccCCCCccHHHHHHHHhhcC
Q 006411 571 -------------------------GYSGSDMKNLVKEASMGPLREALRQGIEITR-LQ-KEDMQPVTLQDFENALPQVR 623 (646)
Q Consensus 571 -------------------------GySGADL~~Lc~eAa~~Airr~l~~~~~~~~-~~-~~~~~~Vt~eDFe~AL~kvr 623 (646)
|||||||..||++|++.|+++.+........ .. ......+++.||++|+++++
T Consensus 691 ~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~ 770 (802)
T KOG0733|consen 691 ITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIR 770 (802)
T ss_pred HhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhcC
Confidence 9999999999999999999997653211100 00 01134588999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhC
Q 006411 624 ASVSLNELGIYEEWNKQFG 642 (646)
Q Consensus 624 PSvs~~dl~~ye~w~k~fg 642 (646)
|||+..|-..|+..++.+|
T Consensus 771 pSv~~~dr~~Yd~l~k~~~ 789 (802)
T KOG0733|consen 771 PSVSERDRKKYDRLNKSRS 789 (802)
T ss_pred CCccHHHHHHHHHHhhhhc
Confidence 9999999999999999987
|
|
| >KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=404.81 Aligned_cols=237 Identities=32% Similarity=0.566 Sum_probs=204.8
Q ss_pred hhHHhhhhhhhHHHHhhhhcccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCC--------
Q 006411 382 LPEKLRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP-------- 453 (646)
Q Consensus 382 ~~~~lk~~ep~~~~~v~~~i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPP-------- 453 (646)
+..++..++..+...+ ..++.|+|+|+||||++++|.+|.+.|.+||+||++|....++..||||||||
T Consensus 646 f~kals~~~~~fs~ai---GAPKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlA 722 (953)
T KOG0736|consen 646 FDKALSRLQKEFSDAI---GAPKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLA 722 (953)
T ss_pred HHHHHHHHHHhhhhhc---CCCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHH
Confidence 4445544444443322 36789999999999999999999999999999999999777888999999999
Q ss_pred -----------------------CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccC
Q 006411 454 -----------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRK 510 (646)
Q Consensus 454 -----------------------vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~ 510 (646)
+|++|++||.+|+.||..+||||||||+|+|++ .|+
T Consensus 723 KAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP---------------------~RG 781 (953)
T KOG0736|consen 723 KAVATECSLNFLSVKGPELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAP---------------------NRG 781 (953)
T ss_pred HHHHhhceeeEEeecCHHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCc---------------------cCC
Confidence 999999999999999999999999999999999 565
Q ss_pred CCCCc-hhhHHHHHHHHHHHcCCCC-CCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC----------------
Q 006411 511 SDGEH-ESSRRLKTQFLIEMEGFDS-GSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS---------------- 570 (646)
Q Consensus 511 s~~~~-e~s~rilneLL~eLDGl~~-~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~---------------- 570 (646)
..+++ ..++||++|||.+|||+.. ....|+|||||||||.|||||+| |||+-+|++.++.
T Consensus 782 ~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFk 861 (953)
T KOG0736|consen 782 RSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFK 861 (953)
T ss_pred CCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHcc
Confidence 55544 5799999999999999986 57789999999999999999999 9999999999964
Q ss_pred ----------------CCcHHHHHHHHHHHhhhHHHHHHHhchhhh---hhcccCCCCccHHHHHHHHhhcCCCCCHHHH
Q 006411 571 ----------------GYSGSDMKNLVKEASMGPLREALRQGIEIT---RLQKEDMQPVTLQDFENALPQVRASVSLNEL 631 (646)
Q Consensus 571 ----------------GySGADL~~Lc~eAa~~Airr~l~~~~~~~---~~~~~~~~~Vt~eDFe~AL~kvrPSvs~~dl 631 (646)
.||||||..||.+|.+.|++|.+......+ .........|+++||.+|+++++||+|..||
T Consensus 862 LdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSvS~~EL 941 (953)
T KOG0736|consen 862 LDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQPSVSEQEL 941 (953)
T ss_pred CCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccccCCceEEEEHHHHHHHHHhcCCcccHHHH
Confidence 899999999999999999999765422111 1122334579999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 006411 632 GIYEEWNKQFG 642 (646)
Q Consensus 632 ~~ye~w~k~fg 642 (646)
..||..+.+|.
T Consensus 942 ~~ye~vr~~fs 952 (953)
T KOG0736|consen 942 LRYEMVRAQFS 952 (953)
T ss_pred HHHHHHHHhhc
Confidence 99999999994
|
|
| >KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-42 Score=370.98 Aligned_cols=239 Identities=59% Similarity=0.969 Sum_probs=220.2
Q ss_pred HHhhhhhhhHHHHhhhhcccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCC----------
Q 006411 384 EKLRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP---------- 453 (646)
Q Consensus 384 ~~lk~~ep~~~~~v~~~i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPP---------- 453 (646)
+.+++++......+.++|+...++|.|+||+|++.+|+.|.|+|+||+.+|++|.+++.|++|+||+|||
T Consensus 126 ~~~~~~~~~~~~~i~~EI~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~a 205 (428)
T KOG0740|consen 126 EKVKEVDETLIEGIRNEIGDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKA 205 (428)
T ss_pred hhhccccchhhHHHHHHHhccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHH
Confidence 4566777788888999999999999999999999999999999999999999999999999999999999
Q ss_pred ---------------------CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCC
Q 006411 454 ---------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSD 512 (646)
Q Consensus 454 ---------------------vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~ 512 (646)
+|++|++||++|..|+..+|+||||||||+++. +| ++
T Consensus 206 iAsE~~atff~iSassLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls---------------------~R-s~ 263 (428)
T KOG0740|consen 206 IATESGATFFNISASSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLS---------------------KR-SD 263 (428)
T ss_pred HHhhhcceEeeccHHHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHh---------------------hc-CC
Confidence 999999999999999999999999999999998 66 78
Q ss_pred CCchhhHHHHHHHHHHHcCCCC-CCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC---------------------
Q 006411 513 GEHESSRRLKTQFLIEMEGFDS-GSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS--------------------- 570 (646)
Q Consensus 513 ~~~e~s~rilneLL~eLDGl~~-~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~--------------------- 570 (646)
.+++.++|+.++||.++++... ..++|+||||||+||.||+|++|||.+++|||+|++
T Consensus 264 ~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~ 343 (428)
T KOG0740|consen 264 NEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDL 343 (428)
T ss_pred cccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHH
Confidence 8899999999999999999987 467999999999999999999999999999999986
Q ss_pred ----------CCcHHHHHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 006411 571 ----------GYSGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRASVSLNELGIYEEWNKQ 640 (646)
Q Consensus 571 ----------GySGADL~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrPSvs~~dl~~ye~w~k~ 640 (646)
||||+||.++|++|++.+++..... .....+..+..++++..||+.|++.++|+++...++.|++|+++
T Consensus 344 d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~-~~~~~~~~~~~r~i~~~df~~a~~~i~~~~s~~~l~~~~~~~~~ 422 (428)
T KOG0740|consen 344 DISLLAKVTEGYSGSDITALCKEAAMGPLRELGGT-TDLEFIDADKIRPITYPDFKNAFKNIKPSVSLEGLEKYEKWDKE 422 (428)
T ss_pred HHHHHHHHhcCcccccHHHHHHHhhcCchhhcccc-hhhhhcchhccCCCCcchHHHHHHhhccccCccccchhHHHhhh
Confidence 9999999999999999999885432 12223455677899999999999999999999999999999999
Q ss_pred hCCCC
Q 006411 641 FGSLS 645 (646)
Q Consensus 641 fg~~~ 645 (646)
||+..
T Consensus 423 fg~~~ 427 (428)
T KOG0740|consen 423 FGSSE 427 (428)
T ss_pred hcccc
Confidence 99864
|
|
| >KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=343.64 Aligned_cols=225 Identities=42% Similarity=0.773 Sum_probs=197.1
Q ss_pred hhhcccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC--CCCccccccCCC----------------------
Q 006411 398 SNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR--SPGKGLLLFGPP---------------------- 453 (646)
Q Consensus 398 ~~~i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~--~PprGVLLyGPP---------------------- 453 (646)
+.-+....-.|+|+||||++.++++|+|.|++|+.+|++|.... .|++||||||||
T Consensus 79 s~~v~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv 158 (386)
T KOG0737|consen 79 SDVVPPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINV 158 (386)
T ss_pred hcccchhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCccee
Confidence 33455677799999999999999999999999999999997443 899999999999
Q ss_pred ---------CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHH
Q 006411 454 ---------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQ 524 (646)
Q Consensus 454 ---------vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilne 524 (646)
+||++|.++++|..|.+.+||||||||||+++. .| ...+|+.+..+++|
T Consensus 159 ~~s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~---------------------~R-~s~dHEa~a~mK~e 216 (386)
T KOG0737|consen 159 SVSNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLG---------------------QR-RSTDHEATAMMKNE 216 (386)
T ss_pred eccccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHh---------------------hc-ccchHHHHHHHHHH
Confidence 899999999999999999999999999999998 67 67899999999999
Q ss_pred HHHHHcCCCCC-CCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC------------------------------CCc
Q 006411 525 FLIEMEGFDSG-SEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS------------------------------GYS 573 (646)
Q Consensus 525 LL~eLDGl~~~-~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~------------------------------GyS 573 (646)
|+..|||+.++ ..+|+|+||||||.+||.|++||+.++++|++|+. |||
T Consensus 217 FM~~WDGl~s~~~~rVlVlgATNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GyS 296 (386)
T KOG0737|consen 217 FMALWDGLSSKDSERVLVLGATNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYS 296 (386)
T ss_pred HHHHhccccCCCCceEEEEeCCCCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCc
Confidence 99999999984 34799999999999999999999999999999975 999
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhc--h-hhhh----hc-c------cCCCCccHHHHHHHHhhcCCCCCHHHH--HHHHHH
Q 006411 574 GSDMKNLVKEASMGPLREALRQG--I-EITR----LQ-K------EDMQPVTLQDFENALPQVRASVSLNEL--GIYEEW 637 (646)
Q Consensus 574 GADL~~Lc~eAa~~Airr~l~~~--~-~~~~----~~-~------~~~~~Vt~eDFe~AL~kvrPSvs~~dl--~~ye~w 637 (646)
|+||+++|+.|++.++|+.+.++ . +... .. . -..++++++||..|+.+|-++++.+.. ...+.|
T Consensus 297 GSDLkelC~~Aa~~~ire~~~~~~~~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~~~~~~t~~~a~~~~ 376 (386)
T KOG0737|consen 297 GSDLKELCRLAALRPIRELLVSETGLLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSASVAMDATRMNALKQW 376 (386)
T ss_pred HHHHHHHHHHHhHhHHHHHHHhcccchhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhHHHHhhhhhHHHHHH
Confidence 99999999999999999998774 0 0000 00 0 125899999999999999998766543 468899
Q ss_pred HHHhCCC
Q 006411 638 NKQFGSL 644 (646)
Q Consensus 638 ~k~fg~~ 644 (646)
++.||+.
T Consensus 377 ~~~~~e~ 383 (386)
T KOG0737|consen 377 NELYGEG 383 (386)
T ss_pred Hhhhccc
Confidence 9999864
|
|
| >KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-40 Score=335.54 Aligned_cols=247 Identities=34% Similarity=0.527 Sum_probs=207.6
Q ss_pred cccccccccCCCCCcC-----ccccccccchhhh-hhhhhh-hhhhcccccceeecccccchhhhhhccCCCCChhHHhh
Q 006411 315 RGSFVPPIRNNGSNVG-----NMTSRISVYVLTI-MFMSIS-HTHAHNYEHVQVLIPFSSFNYSLEMLCGPDGELPEKLR 387 (646)
Q Consensus 315 ~g~fv~pi~~~~~~~~-----~~~~~i~~~~~~~-~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~lk 387 (646)
.|+.-+.|+.+++++. .+|+.|.+.+|+. +.+..+ .+|......|.+|.....
T Consensus 109 vg~leEiidd~haivst~~g~e~Yv~IlSfVdKdlLepgcsvll~~k~~avvGvL~d~~d-------------------- 168 (440)
T KOG0726|consen 109 VGTLEEIIDDNHAIVSTSVGSEYYVSILSFVDKDLLEPGCSVLLNHKVHAVVGVLQDDTD-------------------- 168 (440)
T ss_pred cccHHHHhcCCceEEecccCchheeeeeeeccHhhcCCCCeeeeccccceEEEEeccCCC--------------------
Confidence 5778888999998864 4799999999977 677777 555555555666643211
Q ss_pred hhhhhHHHHhhhhcccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC-------------
Q 006411 388 NLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP------------- 453 (646)
Q Consensus 388 ~~ep~~~~~v~~~i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP------------- 453 (646)
| .++-.-+++.|.-+|.||||++.++++|+|.|.+||.||++|...+ .||+||+|||+|
T Consensus 169 ---p----mv~vmK~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVAN 241 (440)
T KOG0726|consen 169 ---P----MVSVMKVEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVAN 241 (440)
T ss_pred ---c----cceeeecccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhc
Confidence 0 0111124678999999999999999999999999999999999987 899999999999
Q ss_pred ------------------CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCc
Q 006411 454 ------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEH 515 (646)
Q Consensus 454 ------------------vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~ 515 (646)
.|++.++||.+|..|..++|||+||||||++.. |||+. .+.++.
T Consensus 242 qTSATFlRvvGseLiQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGt----------------KRyds--~Sgger 303 (440)
T KOG0726|consen 242 QTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGT----------------KRYDS--NSGGER 303 (440)
T ss_pred ccchhhhhhhhHHHHHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhcc----------------ccccC--CCccHH
Confidence 789999999999999999999999999999998 44444 233343
Q ss_pred hhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC-----------------------
Q 006411 516 ESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS----------------------- 570 (646)
Q Consensus 516 e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~----------------------- 570 (646)
..+|..-+||+|+|||++ ...|-||+|||+.+.|||||+| |+|+.|+||+||+
T Consensus 304 -EiQrtmLELLNQldGFds-rgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle 381 (440)
T KOG0726|consen 304 -EIQRTMLELLNQLDGFDS-RGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLE 381 (440)
T ss_pred -HHHHHHHHHHHhccCccc-cCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHH
Confidence 346667799999999998 7789999999999999999999 9999999999986
Q ss_pred -------CCcHHHHHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhc
Q 006411 571 -------GYSGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQV 622 (646)
Q Consensus 571 -------GySGADL~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kv 622 (646)
.+|||||+++|.+|.+.|+|+.- ..|+++||..|.+++
T Consensus 382 ~li~~kddlSGAdIkAictEaGllAlRerR--------------m~vt~~DF~ka~e~V 426 (440)
T KOG0726|consen 382 ELIMTKDDLSGADIKAICTEAGLLALRERR--------------MKVTMEDFKKAKEKV 426 (440)
T ss_pred HHhhcccccccccHHHHHHHHhHHHHHHHH--------------hhccHHHHHHHHHHH
Confidence 79999999999999999999853 348999999999886
|
|
| >KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=348.80 Aligned_cols=216 Identities=32% Similarity=0.642 Sum_probs=189.0
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC----------------------------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP---------------------------- 453 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP---------------------------- 453 (646)
...++|+|.||||++.+..+|.++++. +++|+.|..+| .||+||||||||
T Consensus 182 ~~~snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeiv 260 (802)
T KOG0733|consen 182 FPESNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIV 260 (802)
T ss_pred CCCCCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhh
Confidence 345589999999999999999999999 99999999987 899999999999
Q ss_pred ---CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHc
Q 006411 454 ---IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEME 530 (646)
Q Consensus 454 ---vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLD 530 (646)
.||+|+.||++|+.|+..+|||+||||||+|.+ +|.. ...+..+||+.|||+.||
T Consensus 261 SGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~p---------------------kRe~-aqreMErRiVaQLlt~mD 318 (802)
T KOG0733|consen 261 SGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITP---------------------KREE-AQREMERRIVAQLLTSMD 318 (802)
T ss_pred cccCcccHHHHHHHHHHHhccCCeEEEeeccccccc---------------------chhh-HHHHHHHHHHHHHHHhhh
Confidence 899999999999999999999999999999998 4533 445678999999999999
Q ss_pred CCCCC---CCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC------------------------------CCcHH
Q 006411 531 GFDSG---SEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS------------------------------GYSGS 575 (646)
Q Consensus 531 Gl~~~---~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~------------------------------GySGA 575 (646)
++... ++.|+|||||||||.|||||+| |||+.|.+..|++ ||+||
T Consensus 319 ~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGA 398 (802)
T KOG0733|consen 319 ELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGA 398 (802)
T ss_pred cccccccCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccch
Confidence 99763 4789999999999999999999 9999999999986 99999
Q ss_pred HHHHHHHHHhhhHHHHHHHhchh---------h--------hh--h-----------------------------cccCC
Q 006411 576 DMKNLVKEASMGPLREALRQGIE---------I--------TR--L-----------------------------QKEDM 607 (646)
Q Consensus 576 DL~~Lc~eAa~~Airr~l~~~~~---------~--------~~--~-----------------------------~~~~~ 607 (646)
||.+||.+|++.||+|++++... . .. + +....
T Consensus 399 DL~AL~~~Aa~vAikR~ld~~~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~ 478 (802)
T KOG0733|consen 399 DLMALCREAAFVAIKRILDQSSSPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEG 478 (802)
T ss_pred hHHHHHHHHHHHHHHHHhhcccCccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhcc
Confidence 99999999999999998863210 0 00 0 00122
Q ss_pred CCccHHHHHHHHhhcCCC-----------CCHHHHHHHHHHHHHh
Q 006411 608 QPVTLQDFENALPQVRAS-----------VSLNELGIYEEWNKQF 641 (646)
Q Consensus 608 ~~Vt~eDFe~AL~kvrPS-----------vs~~dl~~ye~w~k~f 641 (646)
..|.++||+.|+.+++|| |+|+|++.+++.+.++
T Consensus 479 L~i~~eDF~~Al~~iQPSakREGF~tVPdVtW~dIGaL~~vR~eL 523 (802)
T KOG0733|consen 479 LSIKFEDFEEALSKIQPSAKREGFATVPDVTWDDIGALEEVRLEL 523 (802)
T ss_pred ceecHHHHHHHHHhcCcchhcccceecCCCChhhcccHHHHHHHH
Confidence 458999999999999976 8999999999988776
|
|
| >TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-37 Score=352.98 Aligned_cols=240 Identities=37% Similarity=0.648 Sum_probs=205.5
Q ss_pred CChhHHhhhhhhhHHHHhhhhcccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC-----
Q 006411 380 GELPEKLRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP----- 453 (646)
Q Consensus 380 ~~~~~~lk~~ep~~~~~v~~~i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP----- 453 (646)
.++..+++.++|.... ++..+.|+++|+||+|++.+|+.|++.+.+|+.++++|..++ .+|+||||||||
T Consensus 426 ~df~~Al~~v~ps~~~----~~~~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT 501 (733)
T TIGR01243 426 KDFMEALKMVEPSAIR----EVLVEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKT 501 (733)
T ss_pred HHHHHHHhhccccccc----hhhccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHH
Confidence 4456667777765532 344567899999999999999999999999999999999876 788999999999
Q ss_pred --------------------------CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhcc
Q 006411 454 --------------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYF 507 (646)
Q Consensus 454 --------------------------vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~ 507 (646)
+|++++.++.+|..|+..+||||||||||+|++
T Consensus 502 ~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~--------------------- 560 (733)
T TIGR01243 502 LLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAP--------------------- 560 (733)
T ss_pred HHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhc---------------------
Confidence 789999999999999999999999999999998
Q ss_pred ccCCCCCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC---------------
Q 006411 508 QRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS--------------- 570 (646)
Q Consensus 508 ~R~s~~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~--------------- 570 (646)
.|+....+...++++++||.+|||+.. ..+|+||+|||+|+.||+|++| |||+.|+||+||.
T Consensus 561 ~r~~~~~~~~~~~~~~~lL~~ldg~~~-~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~ 639 (733)
T TIGR01243 561 ARGARFDTSVTDRIVNQLLTEMDGIQE-LSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMP 639 (733)
T ss_pred cCCCCCCccHHHHHHHHHHHHhhcccC-CCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCC
Confidence 554444455678999999999999987 5689999999999999999999 9999999999985
Q ss_pred ---------------CCcHHHHHHHHHHHhhhHHHHHHHhchhh--hhh--cccCCCCccHHHHHHHHhhcCCCCCHHHH
Q 006411 571 ---------------GYSGSDMKNLVKEASMGPLREALRQGIEI--TRL--QKEDMQPVTLQDFENALPQVRASVSLNEL 631 (646)
Q Consensus 571 ---------------GySGADL~~Lc~eAa~~Airr~l~~~~~~--~~~--~~~~~~~Vt~eDFe~AL~kvrPSvs~~dl 631 (646)
||||+||.++|++|++.|+++.+...... ... .......|+++||+.|+++++||++.+++
T Consensus 640 ~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps~~~~~~ 719 (733)
T TIGR01243 640 LAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPSVSKEDM 719 (733)
T ss_pred CCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhhhcccccccccCcccHHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999999999865432110 000 01123579999999999999999999999
Q ss_pred HHHHHHHHHhCCCC
Q 006411 632 GIYEEWNKQFGSLS 645 (646)
Q Consensus 632 ~~ye~w~k~fg~~~ 645 (646)
..|++|.++|+.++
T Consensus 720 ~~~~~~~~~~~~~~ 733 (733)
T TIGR01243 720 LRYERLAKELKRLT 733 (733)
T ss_pred HHHHHHHHHhccCC
Confidence 99999999999763
|
This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. |
| >KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=307.56 Aligned_cols=189 Identities=36% Similarity=0.626 Sum_probs=170.7
Q ss_pred ccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC---------------------------
Q 006411 402 MDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP--------------------------- 453 (646)
Q Consensus 402 ~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP--------------------------- 453 (646)
..+.|+-+|+-|||++.++++|+|.+.+|.+||++|..++ ..|+|+||||||
T Consensus 138 VeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgsel 217 (404)
T KOG0728|consen 138 VEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSEL 217 (404)
T ss_pred hhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHH
Confidence 5678999999999999999999999999999999999887 668999999999
Q ss_pred ----CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHH
Q 006411 454 ----IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEM 529 (646)
Q Consensus 454 ----vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eL 529 (646)
.|++.++||.+|-.|+.++|+|||+||||+|++.|+ + ++.+..+..+|..-+||++|
T Consensus 218 vqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~----------------e---~~~ggdsevqrtmlellnql 278 (404)
T KOG0728|consen 218 VQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRV----------------E---SGSGGDSEVQRTMLELLNQL 278 (404)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccc----------------c---CCCCccHHHHHHHHHHHHhc
Confidence 899999999999999999999999999999998321 1 22333445678889999999
Q ss_pred cCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC------------------------------CCcHHHH
Q 006411 530 EGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS------------------------------GYSGSDM 577 (646)
Q Consensus 530 DGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~------------------------------GySGADL 577 (646)
|||.. ..+|-||+||||.+-|||||+| |+|+.|+||+|++ |.|||++
T Consensus 279 dgfea-tknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaev 357 (404)
T KOG0728|consen 279 DGFEA-TKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEV 357 (404)
T ss_pred ccccc-ccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchh
Confidence 99998 6799999999999999999999 9999999999986 9999999
Q ss_pred HHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCC
Q 006411 578 KNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRA 624 (646)
Q Consensus 578 ~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrP 624 (646)
+.+|.+|.|.|+|+. ...||++||+-|+.++--
T Consensus 358 k~vcteagm~alrer--------------rvhvtqedfemav~kvm~ 390 (404)
T KOG0728|consen 358 KGVCTEAGMYALRER--------------RVHVTQEDFEMAVAKVMQ 390 (404)
T ss_pred hhhhhhhhHHHHHHh--------------hccccHHHHHHHHHHHHh
Confidence 999999999999984 246999999999998754
|
|
| >KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-36 Score=324.70 Aligned_cols=180 Identities=37% Similarity=0.689 Sum_probs=164.7
Q ss_pred CCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC------------------------------
Q 006411 405 DPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP------------------------------ 453 (646)
Q Consensus 405 ~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP------------------------------ 453 (646)
..+|+|+||-|++++|++|.|+|.+ |+.|.-|..++ +.|+||||.|||
T Consensus 298 ~~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm 376 (752)
T KOG0734|consen 298 MKNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEM 376 (752)
T ss_pred hcccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhh
Confidence 3489999999999999999999988 99999999886 889999999999
Q ss_pred -CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCC
Q 006411 454 -IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGF 532 (646)
Q Consensus 454 -vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl 532 (646)
+|.+.+.||++|+.|++.+||||||||||+++. +|.....+ ..++.+||||.+||||
T Consensus 377 ~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~---------------------kR~~~~~~-y~kqTlNQLLvEmDGF 434 (752)
T KOG0734|consen 377 FVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGG---------------------KRNPSDQH-YAKQTLNQLLVEMDGF 434 (752)
T ss_pred hhcccHHHHHHHHHHHHhcCCeEEEEechhhhcc---------------------cCCccHHH-HHHHHHHHHHHHhcCc
Confidence 899999999999999999999999999999998 55443333 7899999999999999
Q ss_pred CCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC------------------------------CCcHHHHHHH
Q 006411 533 DSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS------------------------------GYSGSDMKNL 580 (646)
Q Consensus 533 ~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~------------------------------GySGADL~~L 580 (646)
.+ +++|+||||||+|+.||+||+| |||++|.||.||- ||+||||.+|
T Consensus 435 ~q-NeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNl 513 (752)
T KOG0734|consen 435 KQ-NEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANL 513 (752)
T ss_pred Cc-CCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHH
Confidence 98 7899999999999999999999 9999999999985 9999999999
Q ss_pred HHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhc
Q 006411 581 VKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQV 622 (646)
Q Consensus 581 c~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kv 622 (646)
+..|++.|..+ ....|+|.||+.|-.++
T Consensus 514 VNqAAlkAa~d--------------ga~~VtM~~LE~akDrI 541 (752)
T KOG0734|consen 514 VNQAALKAAVD--------------GAEMVTMKHLEFAKDRI 541 (752)
T ss_pred HHHHHHHHHhc--------------CcccccHHHHhhhhhhe
Confidence 99999888654 23569999999999988
|
|
| >COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=322.70 Aligned_cols=209 Identities=46% Similarity=0.794 Sum_probs=185.1
Q ss_pred ChhHHhhhhhhhHHHHhhhhcccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC------
Q 006411 381 ELPEKLRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP------ 453 (646)
Q Consensus 381 ~~~~~lk~~ep~~~~~v~~~i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP------ 453 (646)
++.+.++++.+. .++....|.++|+||+|++.+|+.+++.+.+|+.++++|...+ .+++|+||||||
T Consensus 218 ~~~~~l~~~~~~------~~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~ 291 (494)
T COG0464 218 DFEEALKKVLPS------RGVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTL 291 (494)
T ss_pred HHHHHHHhcCcc------cccccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHH
Confidence 344455555443 3566788999999999999999999999999999999999754 788999999999
Q ss_pred -------------------------CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccc
Q 006411 454 -------------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQ 508 (646)
Q Consensus 454 -------------------------vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~ 508 (646)
+|+++++|+.+|..|+..+||||||||||++++ .
T Consensus 292 lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~---------------------~ 350 (494)
T COG0464 292 LAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLAS---------------------G 350 (494)
T ss_pred HHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhc---------------------c
Confidence 999999999999999999999999999999998 4
Q ss_pred cCCCCCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC----------------
Q 006411 509 RKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS---------------- 570 (646)
Q Consensus 509 R~s~~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~---------------- 570 (646)
|+ ...+....+++++||.+|||+.. ..+|+||+|||+||.||+|++| |||++|+||+||.
T Consensus 351 r~-~~~~~~~~r~~~~lL~~~d~~e~-~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~ 428 (494)
T COG0464 351 RG-PSEDGSGRRVVGQLLTELDGIEK-AEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKP 428 (494)
T ss_pred CC-CCCchHHHHHHHHHHHHhcCCCc-cCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCC
Confidence 43 33333447999999999999998 6689999999999999999999 9999999999985
Q ss_pred ----------------CCcHHHHHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCCCCCHHHHHHH
Q 006411 571 ----------------GYSGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRASVSLNELGIY 634 (646)
Q Consensus 571 ----------------GySGADL~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrPSvs~~dl~~y 634 (646)
||+|+||..+|++|++.++++.. ...|+++||..|+++++||++ |
T Consensus 429 ~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~-------------~~~~~~~~~~~a~~~~~p~~~------~ 489 (494)
T COG0464 429 PLAEDVDLEELAEITEGYSGADIAALVREAALEALREAR-------------RREVTLDDFLDALKKIKPSVT------Y 489 (494)
T ss_pred cchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhc-------------cCCccHHHHHHHHHhcCCCCC------h
Confidence 89999999999999999998853 357999999999999999998 8
Q ss_pred HHH
Q 006411 635 EEW 637 (646)
Q Consensus 635 e~w 637 (646)
++|
T Consensus 490 ~~~ 492 (494)
T COG0464 490 EEW 492 (494)
T ss_pred hhc
Confidence 888
|
|
| >KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=299.00 Aligned_cols=190 Identities=34% Similarity=0.653 Sum_probs=171.0
Q ss_pred cccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC--------------------------
Q 006411 401 IMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP-------------------------- 453 (646)
Q Consensus 401 i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP-------------------------- 453 (646)
..++.|.-+|+||||++.++++|.|+|.+|++|++-|..++ .||+|||+||||
T Consensus 161 evDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQ 240 (424)
T KOG0652|consen 161 EVDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQ 240 (424)
T ss_pred eeccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchH
Confidence 35889999999999999999999999999999999999987 899999999999
Q ss_pred -----CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHH
Q 006411 454 -----IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIE 528 (646)
Q Consensus 454 -----vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~e 528 (646)
.|++.+.||+.|..|+..+|+||||||+|+|+. ||++... .+ ....+|..-+||++
T Consensus 241 LVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGt----------------KRfDSek--~G-DREVQRTMLELLNQ 301 (424)
T KOG0652|consen 241 LVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGT----------------KRFDSEK--AG-DREVQRTMLELLNQ 301 (424)
T ss_pred HHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhcc----------------ccccccc--cc-cHHHHHHHHHHHHh
Confidence 899999999999999999999999999999998 3443322 22 23457888899999
Q ss_pred HcCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC------------------------------CCcHHH
Q 006411 529 MEGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS------------------------------GYSGSD 576 (646)
Q Consensus 529 LDGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~------------------------------GySGAD 576 (646)
||||.+ .++|-||+||||.+-|||||+| |+|+.|+||.|++ +|.|+.
T Consensus 302 LDGFss-~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQ 380 (424)
T KOG0652|consen 302 LDGFSS-DDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQ 380 (424)
T ss_pred hcCCCC-ccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchh
Confidence 999998 7899999999999999999999 9999999999986 999999
Q ss_pred HHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCC
Q 006411 577 MKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRA 624 (646)
Q Consensus 577 L~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrP 624 (646)
.+++|-+|.|.|+|+. ...|+.+||..++..++.
T Consensus 381 cKAVcVEAGMiALRr~--------------atev~heDfmegI~eVqa 414 (424)
T KOG0652|consen 381 CKAVCVEAGMIALRRG--------------ATEVTHEDFMEGILEVQA 414 (424)
T ss_pred heeeehhhhHHHHhcc--------------cccccHHHHHHHHHHHHH
Confidence 9999999999999982 356899999999988753
|
|
| >PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-35 Score=314.14 Aligned_cols=249 Identities=32% Similarity=0.538 Sum_probs=205.3
Q ss_pred ccccccccccCCCCCcC-----ccccccccchhhh-hhhhhh-hhhhcccccceeecccccchhhhhhccCCCCChhHHh
Q 006411 314 VRGSFVPPIRNNGSNVG-----NMTSRISVYVLTI-MFMSIS-HTHAHNYEHVQVLIPFSSFNYSLEMLCGPDGELPEKL 386 (646)
Q Consensus 314 ~~g~fv~pi~~~~~~~~-----~~~~~i~~~~~~~-~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~l 386 (646)
.+|++++.++.++.++. ++++++.+.++.. +.++.. .+|.+++..+.+|++....
T Consensus 68 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~------------------ 129 (398)
T PTZ00454 68 VIGQFLEMIDSNYGIVSSTSGSNYYVRILSTLNRELLKPNASVALHRHSHAVVDILPPEADS------------------ 129 (398)
T ss_pred eEEEEEEEEcCCEEEEEcCCCCEEEEecccccCHhhCCCCCEEEeeccchhHHHhccccccc------------------
Confidence 46788888877766542 5688888888755 666655 6677777777776654221
Q ss_pred hhhhhhHHHHhhhhcccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC------------
Q 006411 387 RNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP------------ 453 (646)
Q Consensus 387 k~~ep~~~~~v~~~i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP------------ 453 (646)
.+....+.+.|+++|+||||++.+|++|++.|.+|+.+|++|..++ .||+||||||||
T Consensus 130 ---------~~~~~~~~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA 200 (398)
T PTZ00454 130 ---------SIQLLQMSEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVA 200 (398)
T ss_pred ---------hhhhhcccCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHH
Confidence 0011124568999999999999999999999999999999999887 788999999999
Q ss_pred -------------------CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCC--C
Q 006411 454 -------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKS--D 512 (646)
Q Consensus 454 -------------------vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s--~ 512 (646)
.|++++.++.+|..|+..+||||||||||+++. +|.. .
T Consensus 201 ~~l~~~fi~i~~s~l~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~---------------------~r~~~~~ 259 (398)
T PTZ00454 201 HHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIAT---------------------KRFDAQT 259 (398)
T ss_pred HhcCCCEEEEehHHHHHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhcc---------------------ccccccC
Confidence 678889999999999999999999999999987 3311 1
Q ss_pred CCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC--------------------
Q 006411 513 GEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS-------------------- 570 (646)
Q Consensus 513 ~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~-------------------- 570 (646)
+......+++.+||.+||++.. ..+|+||+|||+|+.||||++| |||+.|+||+|+.
T Consensus 260 ~~d~~~~r~l~~LL~~ld~~~~-~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dv 338 (398)
T PTZ00454 260 GADREVQRILLELLNQMDGFDQ-TTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEV 338 (398)
T ss_pred CccHHHHHHHHHHHHHhhccCC-CCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCccc
Confidence 2233457889999999999987 5689999999999999999999 9999999999975
Q ss_pred ----------CCcHHHHHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCCC
Q 006411 571 ----------GYSGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRAS 625 (646)
Q Consensus 571 ----------GySGADL~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrPS 625 (646)
||||+||+++|++|++.|+++. ...|+++||+.|+.++...
T Consensus 339 d~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~--------------~~~i~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 339 DLEDFVSRPEKISAADIAAICQEAGMQAVRKN--------------RYVILPKDFEKGYKTVVRK 389 (398)
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC--------------CCccCHHHHHHHHHHHHhc
Confidence 9999999999999999999862 2579999999999998654
|
|
| >KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=290.73 Aligned_cols=187 Identities=34% Similarity=0.625 Sum_probs=168.2
Q ss_pred ccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC---------------------------
Q 006411 402 MDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP--------------------------- 453 (646)
Q Consensus 402 ~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP--------------------------- 453 (646)
..+.|+|+|+||||..++++.|+|.|.+||.+|+-|..++ .||+||||||||
T Consensus 168 veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigsel 247 (435)
T KOG0729|consen 168 VEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSEL 247 (435)
T ss_pred eecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHH
Confidence 5689999999999999999999999999999999999987 899999999999
Q ss_pred ----CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHH
Q 006411 454 ----IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEM 529 (646)
Q Consensus 454 ----vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eL 529 (646)
+||+.++||++|+.|+....|||||||||++.+. ||+. +.+.....+|..-+|++||
T Consensus 248 vqkyvgegarmvrelf~martkkaciiffdeidaigga----------------rfdd---g~ggdnevqrtmleli~ql 308 (435)
T KOG0729|consen 248 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGA----------------RFDD---GAGGDNEVQRTMLELINQL 308 (435)
T ss_pred HHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCc----------------cccC---CCCCcHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999982 3322 2233345678889999999
Q ss_pred cCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC------------------------------CCcHHHH
Q 006411 530 EGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS------------------------------GYSGSDM 577 (646)
Q Consensus 530 DGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~------------------------------GySGADL 577 (646)
||++. .++|-|++|||||+.|||||+| |+|+.++|.+||- .-+|++|
T Consensus 309 dgfdp-rgnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaei 387 (435)
T KOG0729|consen 309 DGFDP-RGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEI 387 (435)
T ss_pred cCCCC-CCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHH
Confidence 99998 7899999999999999999999 9999999999984 6799999
Q ss_pred HHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhc
Q 006411 578 KNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQV 622 (646)
Q Consensus 578 ~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kv 622 (646)
+.+|.+|.|.||+..- ...|-.||+.|+.++
T Consensus 388 rsvcteagmfairarr--------------k~atekdfl~av~kv 418 (435)
T KOG0729|consen 388 RSVCTEAGMFAIRARR--------------KVATEKDFLDAVNKV 418 (435)
T ss_pred HHHHHHhhHHHHHHHh--------------hhhhHHHHHHHHHHH
Confidence 9999999999998631 346889999999987
|
|
| >KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-34 Score=315.13 Aligned_cols=232 Identities=31% Similarity=0.580 Sum_probs=192.2
Q ss_pred CCChhHHhhhhhhhHHHHhhhhcccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC----
Q 006411 379 DGELPEKLRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP---- 453 (646)
Q Consensus 379 ~~~~~~~lk~~ep~~~~~v~~~i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP---- 453 (646)
.+.|.++|+.+-|...+.+. ..+..++.|+|||||.++|+.|++.++||-++|.+|..++ +.+.||||||||
T Consensus 638 ke~f~ksL~~F~P~aLR~ik---~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGK 714 (952)
T KOG0735|consen 638 KELFEKSLKDFVPLALRGIK---LVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGK 714 (952)
T ss_pred HHHHHHHHHhcChHHhhhcc---ccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcH
Confidence 35577788888777766554 2344459999999999999999999999999999999886 667999999999
Q ss_pred ---------------------------CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhc
Q 006411 454 ---------------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFY 506 (646)
Q Consensus 454 ---------------------------vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~ 506 (646)
.|.+|.+||.+|..|+..+|||+||||.|+|++
T Consensus 715 T~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAP-------------------- 774 (952)
T KOG0735|consen 715 TLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAP-------------------- 774 (952)
T ss_pred HHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCc--------------------
Confidence 899999999999999999999999999999999
Q ss_pred cccCCCCCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC--------------
Q 006411 507 FQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS-------------- 570 (646)
Q Consensus 507 ~~R~s~~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~-------------- 570 (646)
+| +......++|++||||++|||... -++|.|+|||.||+.|||||+| |||+.+++|+|++
T Consensus 775 -kR-GhDsTGVTDRVVNQlLTelDG~Eg-l~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~ 851 (952)
T KOG0735|consen 775 -KR-GHDSTGVTDRVVNQLLTELDGAEG-LDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSL 851 (952)
T ss_pred -cc-CCCCCCchHHHHHHHHHhhccccc-cceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhcc
Confidence 55 444556789999999999999988 6799999999999999999999 9999999999986
Q ss_pred ----------------CCcHHHHHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHH--hhcCCCCCHHHHH
Q 006411 571 ----------------GYSGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENAL--PQVRASVSLNELG 632 (646)
Q Consensus 571 ----------------GySGADL~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL--~kvrPSvs~~dl~ 632 (646)
|||||||..||..|.+.|+++.+...... .....++...+.... .+.+||.+.-+-.
T Consensus 852 ~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~~l~~~~~~-----~~~p~~~~~~~~si~~~~~~~~s~~~~~~~ 926 (952)
T KOG0735|consen 852 LKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHEILKREDEE-----GVVPSIDDASLESIFSDSKRKPSRSALDNR 926 (952)
T ss_pred CCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHhcCcc-----ccCCccchhhhhhhhhccCCCccccccchh
Confidence 99999999999999999999987653211 112224444444433 4677888777766
Q ss_pred HHHHHHHHh
Q 006411 633 IYEEWNKQF 641 (646)
Q Consensus 633 ~ye~w~k~f 641 (646)
.+.+...+|
T Consensus 927 ~~~~~~~~~ 935 (952)
T KOG0735|consen 927 KGQDVYSQF 935 (952)
T ss_pred hhhhHHHhh
Confidence 665555444
|
|
| >PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-33 Score=301.91 Aligned_cols=248 Identities=33% Similarity=0.504 Sum_probs=207.0
Q ss_pred cccccccccccCCCCCc-----Cccccccccchhhh-hhhhhh-hhhhcccccceeecccccchhhhhhccCCCCChhHH
Q 006411 313 GVRGSFVPPIRNNGSNV-----GNMTSRISVYVLTI-MFMSIS-HTHAHNYEHVQVLIPFSSFNYSLEMLCGPDGELPEK 385 (646)
Q Consensus 313 g~~g~fv~pi~~~~~~~-----~~~~~~i~~~~~~~-~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 385 (646)
-.+|++++.++.++.+| .++++++.+.++.. +.++.+ .+|..++..+.+|++..+.
T Consensus 105 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~v~l~~~~~~~~~~~~~~~d~----------------- 167 (438)
T PTZ00361 105 LSVGTLEEIIDENHAIVSSSVGPEYYVNILSFVDKEQLEPGCSVLLHNKTHSVVGILLDEVDP----------------- 167 (438)
T ss_pred cEEEEEEEEeCCCeEEEEeCCCCEEEEeccCcCCHhhCCCCCEEEEcCCCCceEecCccccch-----------------
Confidence 45789999999887664 26899999999865 777766 7788888877777643221
Q ss_pred hhhhhhhHHHHhhhhcccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC-----------
Q 006411 386 LRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP----------- 453 (646)
Q Consensus 386 lk~~ep~~~~~v~~~i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP----------- 453 (646)
++ ...-+.+.|.++|+||+|++.++++|++++.+|+.+|++|..++ .||+||||||||
T Consensus 168 -------~~---~~~~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraI 237 (438)
T PTZ00361 168 -------LV---SVMKVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAV 237 (438)
T ss_pred -------hh---hhcccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHH
Confidence 00 11124578999999999999999999999999999999999886 788999999999
Q ss_pred --------------------CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCC--
Q 006411 454 --------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKS-- 511 (646)
Q Consensus 454 --------------------vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s-- 511 (646)
.|++++.++.+|..|+..+||||||||||+++. +|..
T Consensus 238 A~el~~~fi~V~~seL~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~---------------------kR~~~~ 296 (438)
T PTZ00361 238 ANETSATFLRVVGSELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGT---------------------KRYDAT 296 (438)
T ss_pred HHhhCCCEEEEecchhhhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhc---------------------cCCCCC
Confidence 577888999999999999999999999999987 3321
Q ss_pred CCCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC-------------------
Q 006411 512 DGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS------------------- 570 (646)
Q Consensus 512 ~~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~------------------- 570 (646)
.+......+++.+||.+|||+.. ..+|.||+|||+++.||+|++| |||+.|+||+||.
T Consensus 297 sgg~~e~qr~ll~LL~~Ldg~~~-~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~d 375 (438)
T PTZ00361 297 SGGEKEIQRTMLELLNQLDGFDS-RGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAED 375 (438)
T ss_pred CcccHHHHHHHHHHHHHHhhhcc-cCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcC
Confidence 12222346778899999999976 5689999999999999999998 9999999999985
Q ss_pred -----------CCcHHHHHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcC
Q 006411 571 -----------GYSGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVR 623 (646)
Q Consensus 571 -----------GySGADL~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvr 623 (646)
||||+||+++|++|++.|+++. ...|+.+||..|+.++.
T Consensus 376 vdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~--------------r~~Vt~~D~~~A~~~v~ 425 (438)
T PTZ00361 376 VDLEEFIMAKDELSGADIKAICTEAGLLALRER--------------RMKVTQADFRKAKEKVL 425 (438)
T ss_pred cCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc--------------CCccCHHHHHHHHHHHH
Confidence 9999999999999999999872 24699999999999984
|
|
| >KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-31 Score=305.16 Aligned_cols=184 Identities=36% Similarity=0.677 Sum_probs=164.9
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC----------------------------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP---------------------------- 453 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP---------------------------- 453 (646)
...+.|+|.||+|++++|++|.|.|.. |++|+.|..++ .+|+|+||+|||
T Consensus 303 ~~~t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFv 381 (774)
T KOG0731|consen 303 EGNTGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFV 381 (774)
T ss_pred CCCCCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHH
Confidence 345679999999999999999999988 99999999987 889999999999
Q ss_pred ---CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccC---CCCCchhhHHHHHHHHH
Q 006411 454 ---IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRK---SDGEHESSRRLKTQFLI 527 (646)
Q Consensus 454 ---vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~---s~~~~e~s~rilneLL~ 527 (646)
+|.+...||++|..||.++||||||||||+++. +|. ..+.+......+||||.
T Consensus 382 E~~~g~~asrvr~lf~~ar~~aP~iifideida~~~---------------------~r~G~~~~~~~~e~e~tlnQll~ 440 (774)
T KOG0731|consen 382 EMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGR---------------------KRGGKGTGGGQDEREQTLNQLLV 440 (774)
T ss_pred HHhcccchHHHHHHHHHhhccCCeEEEecccccccc---------------------cccccccCCCChHHHHHHHHHHH
Confidence 666788999999999999999999999999998 442 22334455678999999
Q ss_pred HHcCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC-------------------------------CCcH
Q 006411 528 EMEGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS-------------------------------GYSG 574 (646)
Q Consensus 528 eLDGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~-------------------------------GySG 574 (646)
+|||+.. ...|+||++||||+.||+|++| |||++|++++||. ||+|
T Consensus 441 emDgf~~-~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~g 519 (774)
T KOG0731|consen 441 EMDGFET-SKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSG 519 (774)
T ss_pred HhcCCcC-CCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcH
Confidence 9999998 5789999999999999999999 9999999999985 9999
Q ss_pred HHHHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcC
Q 006411 575 SDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVR 623 (646)
Q Consensus 575 ADL~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvr 623 (646)
+||.++|.+|++.|+|+. ...|+..||+.|++++.
T Consensus 520 adl~n~~neaa~~a~r~~--------------~~~i~~~~~~~a~~Rvi 554 (774)
T KOG0731|consen 520 ADLANLCNEAALLAARKG--------------LREIGTKDLEYAIERVI 554 (774)
T ss_pred HHHHhhhhHHHHHHHHhc--------------cCccchhhHHHHHHHHh
Confidence 999999999999999873 35689999999999554
|
|
| >KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-31 Score=306.31 Aligned_cols=204 Identities=37% Similarity=0.662 Sum_probs=176.3
Q ss_pred ccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC---------------------------
Q 006411 402 MDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP--------------------------- 453 (646)
Q Consensus 402 ~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP--------------------------- 453 (646)
+.....|.|++|||++.++..|+|+|.+||.+|+.|..+. .||+||||||||
T Consensus 256 ~~~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmr 335 (1080)
T KOG0732|consen 256 LSVDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMR 335 (1080)
T ss_pred hhhhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhh
Confidence 4456689999999999999999999999999999999886 899999999999
Q ss_pred ---------CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHH
Q 006411 454 ---------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQ 524 (646)
Q Consensus 454 ---------vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilne 524 (646)
+|+.|+.++.+|+.|++.+|+|||+||||-|++ .|.+..+ .....|+++
T Consensus 336 kgaD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlap---------------------vrSskqE-qih~SIvST 393 (1080)
T KOG0732|consen 336 KGADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAP---------------------VRSSKQE-QIHASIVST 393 (1080)
T ss_pred cCchhhccccCcHHHHHHHHHHHHhccCceEEeccccccccc---------------------cccchHH-HhhhhHHHH
Confidence 999999999999999999999999999999998 4533322 233568999
Q ss_pred HHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC-------------------------------C
Q 006411 525 FLIEMEGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS-------------------------------G 571 (646)
Q Consensus 525 LL~eLDGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~-------------------------------G 571 (646)
||..|||+.+ .+.|+||||||||+.+|||++| |||+.+|||+|+. |
T Consensus 394 LLaLmdGlds-RgqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~g 472 (1080)
T KOG0732|consen 394 LLALMDGLDS-RGQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSG 472 (1080)
T ss_pred HHHhccCCCC-CCceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccc
Confidence 9999999998 7899999999999999999999 9999999999964 9
Q ss_pred CcHHHHHHHHHHHhhhHHHHHHHhchhhhhh--cccCCCCccHHHHHHHHhhcCCCCCH
Q 006411 572 YSGSDMKNLVKEASMGPLREALRQGIEITRL--QKEDMQPVTLQDFENALPQVRASVSL 628 (646)
Q Consensus 572 ySGADL~~Lc~eAa~~Airr~l~~~~~~~~~--~~~~~~~Vt~eDFe~AL~kvrPSvs~ 628 (646)
|.|+||+.||.+|++.++++...+.+..... .......|...||..|+.++.|+...
T Consensus 473 y~gaDlkaLCTeAal~~~~r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R 531 (1080)
T KOG0732|consen 473 YGGADLKALCTEAALIALRRSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRR 531 (1080)
T ss_pred cchHHHHHHHHHHhhhhhccccCeeecccccccccchhhhhhhHhhhhhhhccCCCCCc
Confidence 9999999999999999999866554322211 11122348999999999999987544
|
|
| >PRK03992 proteasome-activating nucleotidase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-30 Score=277.70 Aligned_cols=193 Identities=40% Similarity=0.700 Sum_probs=169.9
Q ss_pred cccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC--------------------------
Q 006411 401 IMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP-------------------------- 453 (646)
Q Consensus 401 i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP-------------------------- 453 (646)
...+.|+++|+||+|+++++++|++.+.+|+.+|++|..++ .||+||||||||
T Consensus 121 ~~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~ 200 (389)
T PRK03992 121 EVIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSE 200 (389)
T ss_pred eecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHH
Confidence 35678999999999999999999999999999999999887 789999999999
Q ss_pred -----CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCC--CchhhHHHHHHHH
Q 006411 454 -----IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDG--EHESSRRLKTQFL 526 (646)
Q Consensus 454 -----vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~--~~e~s~rilneLL 526 (646)
.|++++.++.+|+.|+.++||||||||||+|+. .|.... ......+.+.+||
T Consensus 201 l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~---------------------~r~~~~~~~~~~~~~~l~~lL 259 (389)
T PRK03992 201 LVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAA---------------------KRTDSGTSGDREVQRTLMQLL 259 (389)
T ss_pred HhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhc---------------------ccccCCCCccHHHHHHHHHHH
Confidence 577889999999999999999999999999987 332222 1233567788999
Q ss_pred HHHcCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC------------------------------CCcH
Q 006411 527 IEMEGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS------------------------------GYSG 574 (646)
Q Consensus 527 ~eLDGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~------------------------------GySG 574 (646)
.+||++.. ..+|+||+|||+++.||+|++| |||+.|+||+|+. ||+|
T Consensus 260 ~~ld~~~~-~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sg 338 (389)
T PRK03992 260 AEMDGFDP-RGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASG 338 (389)
T ss_pred HhccccCC-CCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCH
Confidence 99999986 5689999999999999999999 9999999999985 9999
Q ss_pred HHHHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCCCCCHH
Q 006411 575 SDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRASVSLN 629 (646)
Q Consensus 575 ADL~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrPSvs~~ 629 (646)
+||+.+|++|++.|+++ ....|+.+||.+|+.+++|+...+
T Consensus 339 adl~~l~~eA~~~a~~~--------------~~~~i~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 339 ADLKAICTEAGMFAIRD--------------DRTEVTMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred HHHHHHHHHHHHHHHHc--------------CCCCcCHHHHHHHHHHHhcccccc
Confidence 99999999999999876 124699999999999999976543
|
|
| >COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=291.20 Aligned_cols=182 Identities=37% Similarity=0.662 Sum_probs=165.2
Q ss_pred CCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC-----------------------------
Q 006411 404 RDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP----------------------------- 453 (646)
Q Consensus 404 ~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP----------------------------- 453 (646)
....|+|.|++|.+++|++|.|.|.. |+.|.-|..++ .-|+||||+|||
T Consensus 143 ~~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVe 221 (596)
T COG0465 143 DQVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE 221 (596)
T ss_pred cccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhh
Confidence 36789999999999999999999987 99999998876 778999999999
Q ss_pred --CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccC--CCCCchhhHHHHHHHHHHH
Q 006411 454 --IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRK--SDGEHESSRRLKTQFLIEM 529 (646)
Q Consensus 454 --vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~--s~~~~e~s~rilneLL~eL 529 (646)
+|-+.+.||++|..|++++||||||||||++.. +|+ ..+.+..-.+++||||++|
T Consensus 222 mfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr---------------------~Rg~g~GggnderEQTLNQlLvEm 280 (596)
T COG0465 222 MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGR---------------------QRGAGLGGGNDEREQTLNQLLVEM 280 (596)
T ss_pred hhcCCCcHHHHHHHHHhhccCCCeEEEehhhhccc---------------------ccCCCCCCCchHHHHHHHHHHhhh
Confidence 888899999999999999999999999999987 443 2344555668999999999
Q ss_pred cCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC------------------------------CCcHHHH
Q 006411 530 EGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS------------------------------GYSGSDM 577 (646)
Q Consensus 530 DGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~------------------------------GySGADL 577 (646)
||+.. +.+|+||+|||||+-|||||+| |||+.|.+++||. ||+|+||
T Consensus 281 DGF~~-~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL 359 (596)
T COG0465 281 DGFGG-NEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADL 359 (596)
T ss_pred ccCCC-CCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchH
Confidence 99996 6799999999999999999999 9999999999984 9999999
Q ss_pred HHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhc
Q 006411 578 KNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQV 622 (646)
Q Consensus 578 ~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kv 622 (646)
.++|.+|++.|.|+. ...|++.||+.|+.++
T Consensus 360 ~nl~NEAal~aar~n--------------~~~i~~~~i~ea~drv 390 (596)
T COG0465 360 ANLLNEAALLAARRN--------------KKEITMRDIEEAIDRV 390 (596)
T ss_pred hhhHHHHHHHHHHhc--------------CeeEeccchHHHHHHH
Confidence 999999999999872 3679999999999998
|
|
| >CHL00195 ycf46 Ycf46; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=280.25 Aligned_cols=195 Identities=23% Similarity=0.366 Sum_probs=167.2
Q ss_pred CCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC------------------------------
Q 006411 405 DPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP------------------------------ 453 (646)
Q Consensus 405 ~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP------------------------------ 453 (646)
.++++|+||||++.+|+.|.+..... +..+...+ .+|+||||||||
T Consensus 222 ~~~~~~~dvgGl~~lK~~l~~~~~~~---~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~ 298 (489)
T CHL00195 222 SVNEKISDIGGLDNLKDWLKKRSTSF---SKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGG 298 (489)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHh---hHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhccc
Confidence 46899999999999999998865432 22233344 678999999999
Q ss_pred -CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCC
Q 006411 454 -IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGF 532 (646)
Q Consensus 454 -vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl 532 (646)
+|+++++++.+|+.|+..+||||||||||.++. .+...+++..+.+++++||..|+..
T Consensus 299 ~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~---------------------~~~~~~d~~~~~rvl~~lL~~l~~~ 357 (489)
T CHL00195 299 IVGESESRMRQMIRIAEALSPCILWIDEIDKAFS---------------------NSESKGDSGTTNRVLATFITWLSEK 357 (489)
T ss_pred ccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhc---------------------cccCCCCchHHHHHHHHHHHHHhcC
Confidence 688999999999999999999999999999987 3334455567789999999999864
Q ss_pred CCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC--------------------------------CCcHHHHH
Q 006411 533 DSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS--------------------------------GYSGSDMK 578 (646)
Q Consensus 533 ~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~--------------------------------GySGADL~ 578 (646)
..+|+||+|||+|+.||||++| |||+.|+|++|+. ||||+||+
T Consensus 358 ---~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~ 434 (489)
T CHL00195 358 ---KSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIE 434 (489)
T ss_pred ---CCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHH
Confidence 3579999999999999999999 9999999999975 99999999
Q ss_pred HHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCCC--CCHHHHHHHHHHHHHh
Q 006411 579 NLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRAS--VSLNELGIYEEWNKQF 641 (646)
Q Consensus 579 ~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrPS--vs~~dl~~ye~w~k~f 641 (646)
++|.+|+..|+.+ ..+++.+||+.|+++++|+ +..++++.+++|...-
T Consensus 435 ~lv~eA~~~A~~~---------------~~~lt~~dl~~a~~~~~Pls~~~~e~i~~~~~Wa~~~ 484 (489)
T CHL00195 435 QSIIEAMYIAFYE---------------KREFTTDDILLALKQFIPLAQTEKEQIEALQNWASSG 484 (489)
T ss_pred HHHHHHHHHHHHc---------------CCCcCHHHHHHHHHhcCCCcccCHHHHHHHHHHHHcC
Confidence 9999999888653 2568999999999999997 4778999999998753
|
|
| >COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.6e-30 Score=259.73 Aligned_cols=184 Identities=29% Similarity=0.535 Sum_probs=159.1
Q ss_pred CCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCC------------------------------
Q 006411 404 RDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP------------------------------ 453 (646)
Q Consensus 404 ~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPP------------------------------ 453 (646)
..++++|+||+|.+++|+..+-++.+ |..|+.|..| .|+.||+||||
T Consensus 114 ~~~~it~ddViGqEeAK~kcrli~~y-LenPe~Fg~W--APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGe 190 (368)
T COG1223 114 IISDITLDDVIGQEEAKRKCRLIMEY-LENPERFGDW--APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGE 190 (368)
T ss_pred hhccccHhhhhchHHHHHHHHHHHHH-hhChHHhccc--CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHH
Confidence 35789999999999999998877776 8999988765 58999999999
Q ss_pred -CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCC
Q 006411 454 -IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGF 532 (646)
Q Consensus 454 -vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl 532 (646)
+|++.++|+.+|+.|++.+||||||||+|+|+- .|+=..-......++|.||++|||+
T Consensus 191 hVGdgar~Ihely~rA~~~aPcivFiDE~DAiaL---------------------dRryQelRGDVsEiVNALLTelDgi 249 (368)
T COG1223 191 HVGDGARRIHELYERARKAAPCIVFIDELDAIAL---------------------DRRYQELRGDVSEIVNALLTELDGI 249 (368)
T ss_pred HhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhh---------------------hhhHHHhcccHHHHHHHHHHhccCc
Confidence 999999999999999999999999999999987 3322222334567999999999999
Q ss_pred CCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC------------------------------CCcHHHHH-HHH
Q 006411 533 DSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS------------------------------GYSGSDMK-NLV 581 (646)
Q Consensus 533 ~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~------------------------------GySGADL~-~Lc 581 (646)
.+ +++|+.|+|||+|+.||+|++.||...|+|.+|+. |+||.||+ .++
T Consensus 250 ~e-neGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvl 328 (368)
T COG1223 250 KE-NEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVL 328 (368)
T ss_pred cc-CCceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHH
Confidence 97 78999999999999999999999999999999986 99999998 466
Q ss_pred HHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCCCC
Q 006411 582 KEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRASV 626 (646)
Q Consensus 582 ~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrPSv 626 (646)
+.|...||.+. ...|+.+||+.|+++.+++-
T Consensus 329 K~aLh~Ai~ed--------------~e~v~~edie~al~k~r~~r 359 (368)
T COG1223 329 KTALHRAIAED--------------REKVEREDIEKALKKERKRR 359 (368)
T ss_pred HHHHHHHHHhc--------------hhhhhHHHHHHHHHhhcccc
Confidence 77777777652 24589999999999877653
|
|
| >TIGR03689 pup_AAA proteasome ATPase | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-29 Score=277.29 Aligned_cols=151 Identities=32% Similarity=0.662 Sum_probs=133.4
Q ss_pred hhhcccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC-----------------------
Q 006411 398 SNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP----------------------- 453 (646)
Q Consensus 398 ~~~i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP----------------------- 453 (646)
...+..+.|+++|+||||++.+++.|++.|.+|+.+|++|..++ .||+|+||||||
T Consensus 169 ~~l~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~ 248 (512)
T TIGR03689 169 EDLVLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAET 248 (512)
T ss_pred hcceeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhcccccccc
Confidence 34456789999999999999999999999999999999999876 788999999999
Q ss_pred ------------------CchHHHHHHHHHHHhhhc----CCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCC
Q 006411 454 ------------------IGEGEKLVRALFGVASCR----QPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKS 511 (646)
Q Consensus 454 ------------------vGesek~Vr~lF~~Ar~~----aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s 511 (646)
.|++++.++.+|+.|+.. .||||||||||+|+. .|+.
T Consensus 249 ~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~---------------------~R~~ 307 (512)
T TIGR03689 249 GDKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFR---------------------TRGS 307 (512)
T ss_pred CCceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhc---------------------ccCC
Confidence 356778899999999865 699999999999997 4544
Q ss_pred CCCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC
Q 006411 512 DGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS 570 (646)
Q Consensus 512 ~~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~ 570 (646)
...++..++++++||++|||+.. ..+|+||+|||+|+.||||++| |||++|+|++|+.
T Consensus 308 ~~s~d~e~~il~~LL~~LDgl~~-~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~ 367 (512)
T TIGR03689 308 GVSSDVETTVVPQLLSELDGVES-LDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDA 367 (512)
T ss_pred CccchHHHHHHHHHHHHhccccc-CCceEEEeccCChhhCCHhhcCccccceEEEeCCCCH
Confidence 44444567899999999999987 5689999999999999999999 9999999999985
|
In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity. |
| >KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.8e-30 Score=264.04 Aligned_cols=185 Identities=35% Similarity=0.628 Sum_probs=164.6
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC----------------------------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP---------------------------- 453 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP---------------------------- 453 (646)
....+++|+.|+|+..+..+++|.|.+|+.+|++|...+ .||+|+||||||
T Consensus 124 e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv 203 (388)
T KOG0651|consen 124 EDPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALV 203 (388)
T ss_pred cCccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhh
Confidence 344579999999999999999999999999999999875 899999999999
Q ss_pred ---CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCC--CCchhhHHHHHHHHHH
Q 006411 454 ---IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSD--GEHESSRRLKTQFLIE 528 (646)
Q Consensus 454 ---vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~--~~~e~s~rilneLL~e 528 (646)
.||+.++||+.|..|+.+.||||||||||++++ .+.+. ......++.+.+||++
T Consensus 204 ~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigG---------------------Rr~se~Ts~dreiqrTLMeLlnq 262 (388)
T KOG0651|consen 204 DKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGG---------------------RRFSEGTSSDREIQRTLMELLNQ 262 (388)
T ss_pred hhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhcc---------------------EEeccccchhHHHHHHHHHHHHh
Confidence 899999999999999999999999999999998 33222 2234567888999999
Q ss_pred HcCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC------------------------------CCcHHH
Q 006411 529 MEGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS------------------------------GYSGSD 576 (646)
Q Consensus 529 LDGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~------------------------------GySGAD 576 (646)
|||++. ..+|-+|+|||+|+.|||||+| |+|+.+++|+|++ ||.|+|
T Consensus 263 mdgfd~-l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad 341 (388)
T KOG0651|consen 263 MDGFDT-LHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGAD 341 (388)
T ss_pred hccchh-cccccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHH
Confidence 999998 6799999999999999999999 9999999999986 999999
Q ss_pred HHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcC
Q 006411 577 MKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVR 623 (646)
Q Consensus 577 L~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvr 623 (646)
+++.|++|.+.++++.- ..+-++||..++.++.
T Consensus 342 ~rn~~tEag~Fa~~~~~--------------~~vl~Ed~~k~vrk~~ 374 (388)
T KOG0651|consen 342 LRNVCTEAGMFAIPEER--------------DEVLHEDFMKLVRKQA 374 (388)
T ss_pred Hhhhcccccccccchhh--------------HHHhHHHHHHHHHHHH
Confidence 99999999999987631 2366899999988763
|
|
| >KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-29 Score=277.66 Aligned_cols=192 Identities=40% Similarity=0.700 Sum_probs=175.3
Q ss_pred CCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC-------------------------------
Q 006411 406 PHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP------------------------------- 453 (646)
Q Consensus 406 p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP------------------------------- 453 (646)
++++ +++||+......+++.|.+|+.+|.+|...+ .||+|+|+||||
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 7788 9999999999999999999999999999887 889999999999
Q ss_pred CchHHHHHHHHHHHhhhcC-CeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCC
Q 006411 454 IGEGEKLVRALFGVASCRQ-PAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGF 532 (646)
Q Consensus 454 vGesek~Vr~lF~~Ar~~a-PsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl 532 (646)
.||+++++|.+|+.|.+++ |+||||||||+|++ +|..... ..+|++.+|++.|||+
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p---------------------~r~~~~~--~e~Rv~sqlltL~dg~ 315 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCP---------------------KREGADD--VESRVVSQLLTLLDGL 315 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCC---------------------cccccch--HHHHHHHHHHHHHhhC
Confidence 8999999999999999999 99999999999998 4433222 5789999999999999
Q ss_pred CCCCCcEEEEEecCCCCcCCHHHHh-ccccEEEeCCCCC------------------------------CCcHHHHHHHH
Q 006411 533 DSGSEQILLVGATNRPQELDEAARR-RLTKRLYIPLPSS------------------------------GYSGSDMKNLV 581 (646)
Q Consensus 533 ~~~~~~VlVIaATNrPd~LDpALlR-RFDr~I~IplPd~------------------------------GySGADL~~Lc 581 (646)
.. ..+|+||+|||+|+.|||+++| |||+.++|..|+. ||+|+||..+|
T Consensus 316 ~~-~~~vivl~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~ 394 (693)
T KOG0730|consen 316 KP-DAKVIVLAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALC 394 (693)
T ss_pred cC-cCcEEEEEecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHH
Confidence 96 6789999999999999999999 9999999999985 99999999999
Q ss_pred HHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCCC-----------CCHHHHHHHHHHHHHh
Q 006411 582 KEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRAS-----------VSLNELGIYEEWNKQF 641 (646)
Q Consensus 582 ~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrPS-----------vs~~dl~~ye~w~k~f 641 (646)
++|++.++++ ++++|..|+..++|| |+|+||+++|+.+.+.
T Consensus 395 ~ea~~~~~r~-------------------~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE~lK~el 446 (693)
T KOG0730|consen 395 REASLQATRR-------------------TLEIFQEALMGIRPSALREILVEMPNVSWDDIGGLEELKREL 446 (693)
T ss_pred HHHHHHHhhh-------------------hHHHHHHHHhcCCchhhhheeccCCCCChhhccCHHHHHHHH
Confidence 9999999987 568888888888865 8999999999887653
|
|
| >TIGR01242 26Sp45 26S proteasome subunit P45 family | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-28 Score=259.12 Aligned_cols=185 Identities=41% Similarity=0.739 Sum_probs=162.2
Q ss_pred ccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC---------------------------
Q 006411 402 MDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP--------------------------- 453 (646)
Q Consensus 402 ~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP--------------------------- 453 (646)
..+.|.++|+||+|++++++.|++.+.+|+.+|++|..++ .+|+|+||||||
T Consensus 113 ~~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l 192 (364)
T TIGR01242 113 VEERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSEL 192 (364)
T ss_pred eccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHH
Confidence 4578999999999999999999999999999999999876 788999999999
Q ss_pred ----CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCC--CchhhHHHHHHHHH
Q 006411 454 ----IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDG--EHESSRRLKTQFLI 527 (646)
Q Consensus 454 ----vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~--~~e~s~rilneLL~ 527 (646)
.|++...++.+|+.|+..+|+||||||||.++. .+.... ......+.+.++|.
T Consensus 193 ~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~---------------------~~~~~~~~~~~~~~~~l~~ll~ 251 (364)
T TIGR01242 193 VRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAA---------------------KRTDSGTSGDREVQRTLMQLLA 251 (364)
T ss_pred HHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhcc---------------------ccccCCCCccHHHHHHHHHHHH
Confidence 567778899999999999999999999999987 332211 12234577889999
Q ss_pred HHcCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC------------------------------CCcHH
Q 006411 528 EMEGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS------------------------------GYSGS 575 (646)
Q Consensus 528 eLDGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~------------------------------GySGA 575 (646)
++|++.. ..+|+||+|||+++.||++++| |||+.|+|++|+. ||+|+
T Consensus 252 ~ld~~~~-~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~ 330 (364)
T TIGR01242 252 ELDGFDP-RGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGA 330 (364)
T ss_pred HhhCCCC-CCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHH
Confidence 9999876 4689999999999999999999 9999999999974 99999
Q ss_pred HHHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhc
Q 006411 576 DMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQV 622 (646)
Q Consensus 576 DL~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kv 622 (646)
||+++|++|++.|+++. ...|+.+||+.|++++
T Consensus 331 dl~~l~~~A~~~a~~~~--------------~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 331 DLKAICTEAGMFAIREE--------------RDYVTMDDFIKAVEKV 363 (364)
T ss_pred HHHHHHHHHHHHHHHhC--------------CCccCHHHHHHHHHHh
Confidence 99999999999998862 3569999999999876
|
Many proteins may score above the trusted cutoff because an internal |
| >TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.8e-28 Score=267.72 Aligned_cols=186 Identities=38% Similarity=0.676 Sum_probs=162.1
Q ss_pred ccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC---------------------------
Q 006411 402 MDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP--------------------------- 453 (646)
Q Consensus 402 ~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP--------------------------- 453 (646)
....|+++|+||+|++++|++|++.+.+ +.+++.|...+ .+|+|+||||||
T Consensus 46 ~~~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~ 124 (495)
T TIGR01241 46 NEEKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDF 124 (495)
T ss_pred cCCCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHH
Confidence 3557899999999999999999998877 89999998765 778999999999
Q ss_pred ----CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCC--CCCchhhHHHHHHHHH
Q 006411 454 ----IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKS--DGEHESSRRLKTQFLI 527 (646)
Q Consensus 454 ----vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s--~~~~e~s~rilneLL~ 527 (646)
.|++++.++.+|+.|+..+||||||||||+|+. .+.. .+.+....+++++||.
T Consensus 125 ~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~---------------------~r~~~~~~~~~~~~~~~~~lL~ 183 (495)
T TIGR01241 125 VEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGR---------------------QRGAGLGGGNDEREQTLNQLLV 183 (495)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhh---------------------ccccCcCCccHHHHHHHHHHHh
Confidence 466788999999999999999999999999987 3322 2233455689999999
Q ss_pred HHcCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC------------------------------CCcHH
Q 006411 528 EMEGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS------------------------------GYSGS 575 (646)
Q Consensus 528 eLDGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~------------------------------GySGA 575 (646)
+||++.. ..+|+||+|||+|+.||||++| |||+.|+|++|+. ||||+
T Consensus 184 ~~d~~~~-~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sga 262 (495)
T TIGR01241 184 EMDGFGT-NTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGA 262 (495)
T ss_pred hhccccC-CCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHH
Confidence 9999977 5689999999999999999999 9999999999985 99999
Q ss_pred HHHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCC
Q 006411 576 DMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRA 624 (646)
Q Consensus 576 DL~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrP 624 (646)
||..+|++|++.++++ ...+|+.+||+.|+.++.+
T Consensus 263 dl~~l~~eA~~~a~~~--------------~~~~i~~~~l~~a~~~~~~ 297 (495)
T TIGR01241 263 DLANLLNEAALLAARK--------------NKTEITMNDIEEAIDRVIA 297 (495)
T ss_pred HHHHHHHHHHHHHHHc--------------CCCCCCHHHHHHHHHHHhc
Confidence 9999999999888764 2357999999999998854
|
HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. |
| >KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.3e-27 Score=255.48 Aligned_cols=210 Identities=31% Similarity=0.487 Sum_probs=173.6
Q ss_pred CCCCccccc--ccChHHHHHHH-HHHHHhhccCccccccCC-CCCccccccCCC--------------------------
Q 006411 404 RDPHVRWDD--IAGLEHAKKCV-MEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP-------------------------- 453 (646)
Q Consensus 404 ~~p~VsfdD--IgGle~~K~~L-~E~V~lPL~~pelf~~~~-~PprGVLLyGPP-------------------------- 453 (646)
..|+..|++ ||||+.--..| +++...-+..|++...++ ...+||||||||
T Consensus 212 i~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGP 291 (744)
T KOG0741|consen 212 INPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGP 291 (744)
T ss_pred cCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcH
Confidence 367777775 78998877665 556666677788888887 567999999999
Q ss_pred ------CchHHHHHHHHHHHhhhc--------CCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCC-CCchhh
Q 006411 454 ------IGEGEKLVRALFGVASCR--------QPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSD-GEHESS 518 (646)
Q Consensus 454 ------vGesek~Vr~lF~~Ar~~--------aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~-~~~e~s 518 (646)
+|++|.+||.+|..|... .--||+|||||+||. +|++. +.....
T Consensus 292 eIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICK---------------------qRGS~~g~TGVh 350 (744)
T KOG0741|consen 292 EILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICK---------------------QRGSMAGSTGVH 350 (744)
T ss_pred HHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHH---------------------hcCCCCCCCCcc
Confidence 999999999999999543 234999999999998 55543 335567
Q ss_pred HHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC--------------------------
Q 006411 519 RRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS-------------------------- 570 (646)
Q Consensus 519 ~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~-------------------------- 570 (646)
+.++||||..|||+++ -.+|+|||.|||+|.||+||+| ||.-.++|.+||+
T Consensus 351 D~VVNQLLsKmDGVeq-LNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl 429 (744)
T KOG0741|consen 351 DTVVNQLLSKMDGVEQ-LNNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDL 429 (744)
T ss_pred HHHHHHHHHhcccHHh-hhcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCH
Confidence 8899999999999998 5689999999999999999999 9999999999997
Q ss_pred --------CCcHHHHHHHHHHHhhhHHHHHHHhchh-hhhhcccCCCCccHHHHHHHHhhcCCC--CCHHHHHHHH
Q 006411 571 --------GYSGSDMKNLVKEASMGPLREALRQGIE-ITRLQKEDMQPVTLQDFENALPQVRAS--VSLNELGIYE 635 (646)
Q Consensus 571 --------GySGADL~~Lc~eAa~~Airr~l~~~~~-~~~~~~~~~~~Vt~eDFe~AL~kvrPS--vs~~dl~~ye 635 (646)
.||||+|+.||+.|...|+.|.+.-+.. ...........|++.||..||..++|+ ++.++++.|.
T Consensus 430 ~elA~lTKNfSGAEleglVksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~see~l~~~~ 505 (744)
T KOG0741|consen 430 KELAALTKNFSGAELEGLVKSAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPAFGISEEDLERFV 505 (744)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCcccCCCHHHHHHHH
Confidence 8999999999999999999997755421 111223345679999999999999998 5788888776
|
|
| >CHL00176 ftsH cell division protein; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-25 Score=254.76 Aligned_cols=183 Identities=36% Similarity=0.651 Sum_probs=158.8
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC----------------------------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP---------------------------- 453 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP---------------------------- 453 (646)
...+.++|+||+|++++|++|.+.+.+ +..++.|...+ .+|+||||||||
T Consensus 175 ~~~~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~ 253 (638)
T CHL00176 175 EADTGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFV 253 (638)
T ss_pred ccCCCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHH
Confidence 345689999999999999999998866 88999988776 778999999999
Q ss_pred ---CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCC--CCCchhhHHHHHHHHHH
Q 006411 454 ---IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKS--DGEHESSRRLKTQFLIE 528 (646)
Q Consensus 454 ---vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s--~~~~e~s~rilneLL~e 528 (646)
.|.+.+.++.+|+.|+..+||||||||||+++. .|+. .+.+.....++++||.+
T Consensus 254 ~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~---------------------~r~~~~~~~~~e~~~~L~~LL~~ 312 (638)
T CHL00176 254 EMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGR---------------------QRGAGIGGGNDEREQTLNQLLTE 312 (638)
T ss_pred HHhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhh---------------------cccCCCCCCcHHHHHHHHHHHhh
Confidence 344667889999999999999999999999987 3322 23344557889999999
Q ss_pred HcCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC------------------------------CCcHHH
Q 006411 529 MEGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS------------------------------GYSGSD 576 (646)
Q Consensus 529 LDGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~------------------------------GySGAD 576 (646)
|||+.. ..+|+||+|||+|+.||+|++| |||++|+|++|+. ||+|+|
T Consensus 313 ~dg~~~-~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaD 391 (638)
T CHL00176 313 MDGFKG-NKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGAD 391 (638)
T ss_pred hccccC-CCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHH
Confidence 999987 5689999999999999999999 9999999999974 999999
Q ss_pred HHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhc
Q 006411 577 MKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQV 622 (646)
Q Consensus 577 L~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kv 622 (646)
|+++|++|++.++++ ....|+++||+.|+.++
T Consensus 392 L~~lvneAal~a~r~--------------~~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 392 LANLLNEAAILTARR--------------KKATITMKEIDTAIDRV 423 (638)
T ss_pred HHHHHHHHHHHHHHh--------------CCCCcCHHHHHHHHHHH
Confidence 999999999888765 23569999999999987
|
|
| >TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-25 Score=257.29 Aligned_cols=212 Identities=37% Similarity=0.669 Sum_probs=176.3
Q ss_pred CCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC-----------------------------
Q 006411 404 RDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP----------------------------- 453 (646)
Q Consensus 404 ~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP----------------------------- 453 (646)
..++++|+||+|++.+++.|++++.+|+.+|++|..++ .+++||||||||
T Consensus 171 ~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~ 250 (733)
T TIGR01243 171 KVPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMS 250 (733)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhc
Confidence 34789999999999999999999999999999999887 788999999999
Q ss_pred --CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcC
Q 006411 454 --IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEG 531 (646)
Q Consensus 454 --vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDG 531 (646)
.|+++..++.+|+.|...+|+||||||||.++. ++.. ...+...+++++|+..||+
T Consensus 251 ~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~---------------------~r~~-~~~~~~~~~~~~Ll~~ld~ 308 (733)
T TIGR01243 251 KYYGESEERLREIFKEAEENAPSIIFIDEIDAIAP---------------------KREE-VTGEVEKRVVAQLLTLMDG 308 (733)
T ss_pred ccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcc---------------------cccC-CcchHHHHHHHHHHHHhhc
Confidence 567888999999999999999999999999987 4422 2233457899999999999
Q ss_pred CCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC------------------------------CCcHHHHHH
Q 006411 532 FDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS------------------------------GYSGSDMKN 579 (646)
Q Consensus 532 l~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~------------------------------GySGADL~~ 579 (646)
+.. ...|+||+|||+|+.||++++| ||++.|++++|+. ||+|+||..
T Consensus 309 l~~-~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~ 387 (733)
T TIGR01243 309 LKG-RGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAA 387 (733)
T ss_pred ccc-CCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHH
Confidence 976 5689999999999999999999 9999999999974 999999999
Q ss_pred HHHHHhhhHHHHHHHhchh---hhhh--cccCCCCccHHHHHHHHhhcCCCC-----------CHHHHHHHHHHH
Q 006411 580 LVKEASMGPLREALRQGIE---ITRL--QKEDMQPVTLQDFENALPQVRASV-----------SLNELGIYEEWN 638 (646)
Q Consensus 580 Lc~eAa~~Airr~l~~~~~---~~~~--~~~~~~~Vt~eDFe~AL~kvrPSv-----------s~~dl~~ye~w~ 638 (646)
+|++|++.++++.+..+.. ...+ .......++++||..|+..++|+. +|+++.+++..+
T Consensus 388 l~~~a~~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~~~~~~di~g~~~~k 462 (733)
T TIGR01243 388 LAKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGGLEEVK 462 (733)
T ss_pred HHHHHHHHHHHHHhhccccccccccccchhcccccccHHHHHHHHhhccccccchhhccccccchhhcccHHHHH
Confidence 9999999999987653210 0001 112334689999999999998873 566666555443
|
This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. |
| >PRK10733 hflB ATP-dependent metalloprotease; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.7e-25 Score=250.77 Aligned_cols=184 Identities=37% Similarity=0.647 Sum_probs=159.0
Q ss_pred CCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC------------------------------
Q 006411 405 DPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP------------------------------ 453 (646)
Q Consensus 405 ~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP------------------------------ 453 (646)
....+|+||+|++.+++.|.+.+.+ +..++.|...+ ..|+||||+|||
T Consensus 146 ~~~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~ 224 (644)
T PRK10733 146 QIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM 224 (644)
T ss_pred hhhCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHh
Confidence 4568899999999999999999987 56677776554 667999999999
Q ss_pred -CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCC--CCCchhhHHHHHHHHHHHc
Q 006411 454 -IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKS--DGEHESSRRLKTQFLIEME 530 (646)
Q Consensus 454 -vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s--~~~~e~s~rilneLL~eLD 530 (646)
.|.+...++.+|..|+..+||||||||||+++. +|.. .+.+....+++++||.+||
T Consensus 225 ~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~---------------------~r~~~~~g~~~~~~~~ln~lL~~md 283 (644)
T PRK10733 225 FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGR---------------------QRGAGLGGGHDEREQTLNQMLVEMD 283 (644)
T ss_pred hhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhh---------------------ccCCCCCCCchHHHHHHHHHHHhhh
Confidence 466778999999999999999999999999987 3432 2334456789999999999
Q ss_pred CCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC------------------------------CCcHHHHH
Q 006411 531 GFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS------------------------------GYSGSDMK 578 (646)
Q Consensus 531 Gl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~------------------------------GySGADL~ 578 (646)
|+.. ..+|+||+|||+|+.||+|++| |||++|+|++||. ||||+||.
T Consensus 284 g~~~-~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~ 362 (644)
T PRK10733 284 GFEG-NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLA 362 (644)
T ss_pred cccC-CCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHH
Confidence 9987 6789999999999999999999 9999999999984 99999999
Q ss_pred HHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCCC
Q 006411 579 NLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRAS 625 (646)
Q Consensus 579 ~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrPS 625 (646)
++|++|+..|+++ ....|++.||+.|+.++.+.
T Consensus 363 ~l~~eAa~~a~r~--------------~~~~i~~~d~~~a~~~v~~g 395 (644)
T PRK10733 363 NLVNEAALFAARG--------------NKRVVSMVEFEKAKDKIMMG 395 (644)
T ss_pred HHHHHHHHHHHHc--------------CCCcccHHHHHHHHHHHhcc
Confidence 9999999998875 23569999999999988664
|
|
| >CHL00206 ycf2 Ycf2; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.7e-24 Score=255.30 Aligned_cols=122 Identities=19% Similarity=0.237 Sum_probs=105.2
Q ss_pred HHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCC--CCC
Q 006411 460 LVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDS--GSE 537 (646)
Q Consensus 460 ~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~--~~~ 537 (646)
.|+.+|+.|++++||||||||||+|+. .. .....+++||++|||... ...
T Consensus 1720 rIr~lFelARk~SPCIIFIDEIDaL~~---------------------~d-------s~~ltL~qLLneLDg~~~~~s~~ 1771 (2281)
T CHL00206 1720 YITLQFELAKAMSPCIIWIPNIHDLNV---------------------NE-------SNYLSLGLLVNSLSRDCERCSTR 1771 (2281)
T ss_pred HHHHHHHHHHHCCCeEEEEEchhhcCC---------------------Cc-------cceehHHHHHHHhccccccCCCC
Confidence 389999999999999999999999986 21 112348999999999752 356
Q ss_pred cEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC---------------------------------CCcHHHHHHHHH
Q 006411 538 QILLVGATNRPQELDEAARR--RLTKRLYIPLPSS---------------------------------GYSGSDMKNLVK 582 (646)
Q Consensus 538 ~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~---------------------------------GySGADL~~Lc~ 582 (646)
+|+||||||+|+.|||||+| |||+.|+|++|+. |||||||++||.
T Consensus 1772 ~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvN 1851 (2281)
T CHL00206 1772 NILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTN 1851 (2281)
T ss_pred CEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHH
Confidence 89999999999999999999 9999999999864 999999999999
Q ss_pred HHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcC
Q 006411 583 EASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVR 623 (646)
Q Consensus 583 eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvr 623 (646)
+|++.|+++ ....|+.+||..|+.++.
T Consensus 1852 EAaliAirq--------------~ks~Id~~~I~~Al~Rq~ 1878 (2281)
T CHL00206 1852 EALSISITQ--------------KKSIIDTNTIRSALHRQT 1878 (2281)
T ss_pred HHHHHHHHc--------------CCCccCHHHHHHHHHHHH
Confidence 999999986 235688999999998775
|
|
| >PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-20 Score=201.18 Aligned_cols=153 Identities=16% Similarity=0.156 Sum_probs=113.1
Q ss_pred Ccccccc-cChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCC-------------------------------C
Q 006411 407 HVRWDDI-AGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP-------------------------------I 454 (646)
Q Consensus 407 ~VsfdDI-gGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPP-------------------------------v 454 (646)
..+|+++ +|+.-.+.-+...+...-+.. +......+|+|+|||||| +
T Consensus 111 ~~~f~~~~g~~~~~p~f~dk~~~hi~kn~-l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~v 189 (413)
T PLN00020 111 TRSFDNLVGGYYIAPAFMDKVAVHIAKNF-LALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENA 189 (413)
T ss_pred hcchhhhcCccccCHHHHHHHHHHHHhhh-hhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcC
Confidence 4677888 777766666655554433221 111223789999999999 9
Q ss_pred chHHHHHHHHHHHhhhc-----CCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHH-HHHHHH
Q 006411 455 GEGEKLVRALFGVASCR-----QPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLK-TQFLIE 528 (646)
Q Consensus 455 Gesek~Vr~lF~~Ar~~-----aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~ril-neLL~e 528 (646)
||+|++||.+|..|+.. +||||||||||++++ +|+. ..+....+++ .+||++
T Consensus 190 GEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g---------------------~r~~-~~~tv~~qiV~~tLLnl 247 (413)
T PLN00020 190 GEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAG---------------------RFGT-TQYTVNNQMVNGTLMNI 247 (413)
T ss_pred CcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCC---------------------CCCC-CCcchHHHHHHHHHHHH
Confidence 99999999999999864 699999999999998 5542 3334444555 899999
Q ss_pred HcCCC-----------CCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC--------------CCcHHHHHHHH
Q 006411 529 MEGFD-----------SGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS--------------GYSGSDMKNLV 581 (646)
Q Consensus 529 LDGl~-----------~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~--------------GySGADL~~Lc 581 (646)
||+.. ....+|+||+|||+|+.|||||+| |||+.| .+||. +.+..|+..|+
T Consensus 248 ~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~~~dv~~Lv 325 (413)
T PLN00020 248 ADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVSREDVVKLV 325 (413)
T ss_pred hcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCCHHHHHHHH
Confidence 98741 235679999999999999999999 999975 57875 55555555555
Q ss_pred HHH
Q 006411 582 KEA 584 (646)
Q Consensus 582 ~eA 584 (646)
..-
T Consensus 326 ~~f 328 (413)
T PLN00020 326 DTF 328 (413)
T ss_pred HcC
Confidence 443
|
|
| >KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-15 Score=165.23 Aligned_cols=146 Identities=20% Similarity=0.309 Sum_probs=115.1
Q ss_pred CcccccccChHHHHHHHHHHHHhhccCccccccCCCCC-ccccccCCCCchHHHHHHHHHHHhh----------------
Q 006411 407 HVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPG-KGLLLFGPPIGEGEKLVRALFGVAS---------------- 469 (646)
Q Consensus 407 ~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~Pp-rGVLLyGPPvGesek~Vr~lF~~Ar---------------- 469 (646)
+-+|+.|+--.+.|+.|.+.+...++..+.|+..|.|+ ||+||||||+.+...+|.++-....
T Consensus 197 pstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n~d 276 (457)
T KOG0743|consen 197 PSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLDSD 276 (457)
T ss_pred CCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCcHH
Confidence 38999999999999999999999999999999999776 8999999996666777766633221
Q ss_pred -------hcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCC--CCCc-hhhHHHHHHHHHHHcCCCCCC-Cc
Q 006411 470 -------CRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKS--DGEH-ESSRRLKTQFLIEMEGFDSGS-EQ 538 (646)
Q Consensus 470 -------~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s--~~~~-e~s~rilneLL~eLDGl~~~~-~~ 538 (646)
...-|||+|++||+-+.- +. ++.. ...+ ..+...++.||+.+||+++.. +-
T Consensus 277 Lr~LL~~t~~kSIivIEDIDcs~~l--------------~~----~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~E 338 (457)
T KOG0743|consen 277 LRHLLLATPNKSILLIEDIDCSFDL--------------RE----RRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDE 338 (457)
T ss_pred HHHHHHhCCCCcEEEEeeccccccc--------------cc----ccccccccccCCcceeehHHhhhhhccccccCCCc
Confidence 125789999999987651 00 1111 1111 134567899999999999833 34
Q ss_pred EEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC
Q 006411 539 ILLVGATNRPQELDEAARR--RLTKRLYIPLPSS 570 (646)
Q Consensus 539 VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~ 570 (646)
-+||+|||+++.|||||+| |+|.+||++.++.
T Consensus 339 RIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf 372 (457)
T KOG0743|consen 339 RIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTF 372 (457)
T ss_pred eEEEEecCChhhcCHhhcCCCcceeEEEcCCCCH
Confidence 5788999999999999999 9999999999875
|
|
| >COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.4e-14 Score=158.50 Aligned_cols=180 Identities=42% Similarity=0.690 Sum_probs=152.2
Q ss_pred hhccCccccccCC-CCCccccccCCC------------------------------CchHHHHHHHHHHHhhhcCCeeee
Q 006411 429 WPLLRPDIFKGCR-SPGKGLLLFGPP------------------------------IGEGEKLVRALFGVASCRQPAVIF 477 (646)
Q Consensus 429 lPL~~pelf~~~~-~PprGVLLyGPP------------------------------vGesek~Vr~lF~~Ar~~aPsIIF 477 (646)
+|+.+++.|...+ .|++|+++|||| .|+++..++.+|..|+..+|+|+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~ 81 (494)
T COG0464 2 LPLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANEGAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIF 81 (494)
T ss_pred CCccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhccCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEe
Confidence 5778888888775 788999999999 567788999999999999999999
Q ss_pred ehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHh
Q 006411 478 VDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARR 557 (646)
Q Consensus 478 IDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlR 557 (646)
+||+|.+++ .+.. .......+++.+|+..||++. ... |+++++||+++.+|+++++
T Consensus 82 ~d~~~~~~~---------------------~~~~-~~~~~~~~v~~~l~~~~d~~~-~~~-v~~~~~~~~~~~~~~a~~~ 137 (494)
T COG0464 82 IDEIDALAP---------------------KRSS-DQGEVERRVVAQLLALMDGLK-RGQ-VIVIGATNRPDGLDPAKRR 137 (494)
T ss_pred echhhhccc---------------------Cccc-cccchhhHHHHHHHHhccccc-CCc-eEEEeecCCccccChhHhC
Confidence 999999998 4433 444567899999999999999 466 9999999999999999999
Q ss_pred --ccccEEEeCCCCC------------------------------CCcHHHHHHHHHHHhhhHHHHHHHhchhhhhhccc
Q 006411 558 --RLTKRLYIPLPSS------------------------------GYSGSDMKNLVKEASMGPLREALRQGIEITRLQKE 605 (646)
Q Consensus 558 --RFDr~I~IplPd~------------------------------GySGADL~~Lc~eAa~~Airr~l~~~~~~~~~~~~ 605 (646)
||++.++++.|+. ||+++|+..+|+++.+.++++.+ ....
T Consensus 138 ~~~~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~--------~~~~ 209 (494)
T COG0464 138 PGRFDREIEVNLPDEAGRLEILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAI--------DLVG 209 (494)
T ss_pred ccccceeeecCCCCHHHHHHHHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhh--------ccCc
Confidence 9999999999975 89999999999999999998853 0112
Q ss_pred CCCCccHHHHHHHHhhcCC---------CCCHHHHHHHHHHHHH
Q 006411 606 DMQPVTLQDFENALPQVRA---------SVSLNELGIYEEWNKQ 640 (646)
Q Consensus 606 ~~~~Vt~eDFe~AL~kvrP---------Svs~~dl~~ye~w~k~ 640 (646)
....++.+||..+++++.| .++|.++++++.-+++
T Consensus 210 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~diggl~~~k~~ 253 (494)
T COG0464 210 EYIGVTEDDFEEALKKVLPSRGVLFEDEDVTLDDIGGLEEAKEE 253 (494)
T ss_pred ccccccHHHHHHHHHhcCcccccccCCCCcceehhhcHHHHHHH
Confidence 3356899999999999866 4788888766655443
|
|
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.3e-14 Score=127.08 Aligned_cols=92 Identities=29% Similarity=0.547 Sum_probs=80.5
Q ss_pred CchHHHHHHHHHHHhhhcC-CeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCC
Q 006411 454 IGEGEKLVRALFGVASCRQ-PAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGF 532 (646)
Q Consensus 454 vGesek~Vr~lF~~Ar~~a-PsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl 532 (646)
.++.++.++.+|..|+... ||||||||+|.++. .. ..........++++|+..|+..
T Consensus 39 ~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~---------------------~~-~~~~~~~~~~~~~~L~~~l~~~ 96 (132)
T PF00004_consen 39 AGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFP---------------------KS-QPSSSSFEQRLLNQLLSLLDNP 96 (132)
T ss_dssp TTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSH---------------------HC-STSSSHHHHHHHHHHHHHHHTT
T ss_pred ccccccccccccccccccccceeeeeccchhccc---------------------cc-ccccccccccccceeeeccccc
Confidence 6788999999999999888 99999999999998 33 3334556788999999999999
Q ss_pred CCCCCcEEEEEecCCCCcCCHHHH-hccccEEEeCC
Q 006411 533 DSGSEQILLVGATNRPQELDEAAR-RRLTKRLYIPL 567 (646)
Q Consensus 533 ~~~~~~VlVIaATNrPd~LDpALl-RRFDr~I~Ipl 567 (646)
.....+++||+|||.++.||++++ +||+++|++|+
T Consensus 97 ~~~~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~~ 132 (132)
T PF00004_consen 97 SSKNSRVIVIATTNSPDKIDPALLRSRFDRRIEFPL 132 (132)
T ss_dssp TTTSSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-S
T ss_pred ccccccceeEEeeCChhhCCHhHHhCCCcEEEEcCC
Confidence 886578999999999999999999 89999999985
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.2e-13 Score=143.41 Aligned_cols=142 Identities=20% Similarity=0.333 Sum_probs=114.2
Q ss_pred cccccChHHHHHHHHHHHHhhccCccccc--cCCCCCccccccCCC----------------------------------
Q 006411 410 WDDIAGLEHAKKCVMEMVIWPLLRPDIFK--GCRSPGKGLLLFGPP---------------------------------- 453 (646)
Q Consensus 410 fdDIgGle~~K~~L~E~V~lPL~~pelf~--~~~~PprGVLLyGPP---------------------------------- 453 (646)
|+.++--..+|+.|..++..-+...+... .+....|=|||||||
T Consensus 141 WEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh 220 (423)
T KOG0744|consen 141 WESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH 220 (423)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh
Confidence 67777777899999999888776555433 234556889999999
Q ss_pred ------CchHHHHHHHHHHHhhhc---CCe--eeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHH
Q 006411 454 ------IGEGEKLVRALFGVASCR---QPA--VIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLK 522 (646)
Q Consensus 454 ------vGesek~Vr~lF~~Ar~~---aPs--IIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~ril 522 (646)
++|+.|+|..+|+..... ..+ .++|||+++|+..| .. -.+..+....-|++
T Consensus 221 sLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR--------------~s----~~S~~EpsDaIRvV 282 (423)
T KOG0744|consen 221 SLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAAR--------------TS----ASSRNEPSDAIRVV 282 (423)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHH--------------Hh----hhcCCCCchHHHHH
Confidence 899999999999977543 233 45699999999821 10 01334555677999
Q ss_pred HHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 523 TQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 523 neLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
|.+|+|||.++. ..+|++++|+|-.+.||.|+..|-|-+.||+.|+.
T Consensus 283 NalLTQlDrlK~-~~NvliL~TSNl~~siD~AfVDRADi~~yVG~Pt~ 329 (423)
T KOG0744|consen 283 NALLTQLDRLKR-YPNVLILATSNLTDSIDVAFVDRADIVFYVGPPTA 329 (423)
T ss_pred HHHHHHHHHhcc-CCCEEEEeccchHHHHHHHhhhHhhheeecCCccH
Confidence 999999999998 78999999999999999999999999999999985
|
|
| >CHL00181 cbbX CbbX; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.5e-13 Score=137.55 Aligned_cols=154 Identities=19% Similarity=0.288 Sum_probs=106.0
Q ss_pred ccccChHHHHHHHHHHHHhhccCccccccCC--CCCcc--ccccCCCC--------------------------------
Q 006411 411 DDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR--SPGKG--LLLFGPPI-------------------------------- 454 (646)
Q Consensus 411 dDIgGle~~K~~L~E~V~lPL~~pelf~~~~--~PprG--VLLyGPPv-------------------------------- 454 (646)
.+++|++++|++|++++.+ +..++++...+ .+..| +||+|||+
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 5899999999999999988 43455555443 22234 89999992
Q ss_pred ------chHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHH
Q 006411 455 ------GEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIE 528 (646)
Q Consensus 455 ------Gesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~e 528 (646)
|+++..++.+|+.| .+.||||||+|.|.. .+ ........+...|+..
T Consensus 102 l~~~~~g~~~~~~~~~l~~a---~ggVLfIDE~~~l~~---------------------~~---~~~~~~~e~~~~L~~~ 154 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKA---MGGVLFIDEAYYLYK---------------------PD---NERDYGSEAIEILLQV 154 (287)
T ss_pred HHHHHhccchHHHHHHHHHc---cCCEEEEEccchhcc---------------------CC---CccchHHHHHHHHHHH
Confidence 22233334444443 468999999999865 22 1222346778899999
Q ss_pred HcCCCCCCCcEEEEEecCCCC-----cCCHHHHhccccEEEeCCCCC---------------------------------
Q 006411 529 MEGFDSGSEQILLVGATNRPQ-----ELDEAARRRLTKRLYIPLPSS--------------------------------- 570 (646)
Q Consensus 529 LDGl~~~~~~VlVIaATNrPd-----~LDpALlRRFDr~I~IplPd~--------------------------------- 570 (646)
|+... .+++||+|++... .++|++++||+.+|+|+.++.
T Consensus 155 me~~~---~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~ 231 (287)
T CHL00181 155 MENQR---DDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKR 231 (287)
T ss_pred HhcCC---CCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHh
Confidence 98643 4688888886422 346999999999999999974
Q ss_pred ----CCc-HHHHHHHHHHHhhhHHHHHHHh
Q 006411 571 ----GYS-GSDMKNLVKEASMGPLREALRQ 595 (646)
Q Consensus 571 ----GyS-GADL~~Lc~eAa~~Airr~l~~ 595 (646)
.|. +.+++++++.|......|.+.+
T Consensus 232 ~~~~~~GNaR~vrn~ve~~~~~~~~r~~~~ 261 (287)
T CHL00181 232 MEQPLFANARSVRNALDRARMRQANRIFES 261 (287)
T ss_pred CCCCCCccHHHHHHHHHHHHHHHHHHHHcC
Confidence 233 6777777777776666665543
|
|
| >KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.5e-12 Score=140.37 Aligned_cols=139 Identities=25% Similarity=0.395 Sum_probs=108.6
Q ss_pred CCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCC------------------------------
Q 006411 404 RDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP------------------------------ 453 (646)
Q Consensus 404 ~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPP------------------------------ 453 (646)
..+.-.+++|+--..++..|....+..- +... ...|.+.||+||||
T Consensus 348 ~~gk~pl~~ViL~psLe~Rie~lA~aTa-NTK~---h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl 423 (630)
T KOG0742|consen 348 SRGKDPLEGVILHPSLEKRIEDLAIATA-NTKK---HQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL 423 (630)
T ss_pred hcCCCCcCCeecCHHHHHHHHHHHHHhc-cccc---ccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc
Confidence 3444558999988888888888766522 2221 23567999999999
Q ss_pred CchHHHHHHHHHHHhhhc-CCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCC
Q 006411 454 IGEGEKLVRALFGVASCR-QPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGF 532 (646)
Q Consensus 454 vGesek~Vr~lF~~Ar~~-aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl 532 (646)
+.++-..|+.+|+.|++. ..-++||||.|+++. .|.....++..+..+|.||-..-.
T Consensus 424 G~qaVTkiH~lFDWakkS~rGLllFIDEADAFLc---------------------eRnktymSEaqRsaLNAlLfRTGd- 481 (630)
T KOG0742|consen 424 GAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLC---------------------ERNKTYMSEAQRSALNALLFRTGD- 481 (630)
T ss_pred chHHHHHHHHHHHHHhhcccceEEEehhhHHHHH---------------------HhchhhhcHHHHHHHHHHHHHhcc-
Confidence 445667899999999765 567899999999987 666666777888899998854322
Q ss_pred CCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 533 DSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 533 ~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
....|+++.|||+|.+||.|+-.|||..|+||+|..
T Consensus 482 --qSrdivLvlAtNrpgdlDsAV~DRide~veFpLPGe 517 (630)
T KOG0742|consen 482 --QSRDIVLVLATNRPGDLDSAVNDRIDEVVEFPLPGE 517 (630)
T ss_pred --cccceEEEeccCCccchhHHHHhhhhheeecCCCCh
Confidence 235688889999999999999999999999999954
|
|
| >TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.4e-11 Score=126.70 Aligned_cols=129 Identities=18% Similarity=0.231 Sum_probs=91.8
Q ss_pred ccccChHHHHHHHHHHHHhhccCccccccCC----CCCccccccCCCCch------------------------------
Q 006411 411 DDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR----SPGKGLLLFGPPIGE------------------------------ 456 (646)
Q Consensus 411 dDIgGle~~K~~L~E~V~lPL~~pelf~~~~----~PprGVLLyGPPvGe------------------------------ 456 (646)
.+++|++++|+.|.+.+.+ +..++.+...+ .|..++||+|||+.+
T Consensus 22 ~~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~ 100 (284)
T TIGR02880 22 RELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDD 100 (284)
T ss_pred HhccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHH
Confidence 3689999999999999988 55666665444 244589999999222
Q ss_pred --------HHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHH
Q 006411 457 --------GEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIE 528 (646)
Q Consensus 457 --------sek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~e 528 (646)
++..++.+|+.| .++||||||||.|.. .+ .+......+.+.|+..
T Consensus 101 l~~~~~g~~~~~~~~~~~~a---~~gvL~iDEi~~L~~---------------------~~---~~~~~~~~~~~~Ll~~ 153 (284)
T TIGR02880 101 LVGQYIGHTAPKTKEILKRA---MGGVLFIDEAYYLYR---------------------PD---NERDYGQEAIEILLQV 153 (284)
T ss_pred HhHhhcccchHHHHHHHHHc---cCcEEEEechhhhcc---------------------CC---CccchHHHHHHHHHHH
Confidence 223334445444 468999999999864 21 1222345678899999
Q ss_pred HcCCCCCCCcEEEEEecCC--CCc---CCHHHHhccccEEEeCCCCC
Q 006411 529 MEGFDSGSEQILLVGATNR--PQE---LDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 529 LDGl~~~~~~VlVIaATNr--Pd~---LDpALlRRFDr~I~IplPd~ 570 (646)
|+.. ..+++||+||+. ++. ++|++++||+..|+||.++.
T Consensus 154 le~~---~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~ 197 (284)
T TIGR02880 154 MENQ---RDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSE 197 (284)
T ss_pred HhcC---CCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCH
Confidence 9854 346888888764 332 58999999999999999863
|
Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis. |
| >TIGR02881 spore_V_K stage V sporulation protein K | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.5e-11 Score=124.26 Aligned_cols=140 Identities=19% Similarity=0.303 Sum_probs=93.6
Q ss_pred cccccChHHHHHHHHHHHHhhccCccccc-cCCCC--CccccccCCCC--------------------------------
Q 006411 410 WDDIAGLEHAKKCVMEMVIWPLLRPDIFK-GCRSP--GKGLLLFGPPI-------------------------------- 454 (646)
Q Consensus 410 fdDIgGle~~K~~L~E~V~lPL~~pelf~-~~~~P--prGVLLyGPPv-------------------------------- 454 (646)
+++++|++.+|+.|++++.++........ +...+ ...+||||||+
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~ 84 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERAD 84 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHH
Confidence 47899999999999999999765433222 22222 35689999992
Q ss_pred ------chHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHH
Q 006411 455 ------GEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIE 528 (646)
Q Consensus 455 ------Gesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~e 528 (646)
|+.+..++.+|+.|. ++||||||+|.|.. . ++.......+..|+..
T Consensus 85 l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~---------------------~----~~~~~~~~~i~~Ll~~ 136 (261)
T TIGR02881 85 LVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLAR---------------------G----GEKDFGKEAIDTLVKG 136 (261)
T ss_pred hhhhhccchHHHHHHHHHhcc---CCEEEEechhhhcc---------------------C----CccchHHHHHHHHHHH
Confidence 233445556665553 68999999999853 1 1112235577889999
Q ss_pred HcCCCCCCCcEEEEEecCCC-----CcCCHHHHhccccEEEeCCCCCCCcHHHHHHHHHHH
Q 006411 529 MEGFDSGSEQILLVGATNRP-----QELDEAARRRLTKRLYIPLPSSGYSGSDMKNLVKEA 584 (646)
Q Consensus 529 LDGl~~~~~~VlVIaATNrP-----d~LDpALlRRFDr~I~IplPd~GySGADL~~Lc~eA 584 (646)
|+... ..++||+|+... ..++|++++||+..|.||.++ ..++..+++..
T Consensus 137 ~e~~~---~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~----~~el~~Il~~~ 190 (261)
T TIGR02881 137 MEDNR---NEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYT----VEELMEIAERM 190 (261)
T ss_pred HhccC---CCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCC----HHHHHHHHHHH
Confidence 88753 356666665432 247899999999989998754 45555555433
|
Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group. |
| >TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.3e-10 Score=130.22 Aligned_cols=193 Identities=20% Similarity=0.292 Sum_probs=128.4
Q ss_pred cccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCC----------------------------------
Q 006411 408 VRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP---------------------------------- 453 (646)
Q Consensus 408 VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPP---------------------------------- 453 (646)
=++++|+|-++....+.+.+.. ....++||||||
T Consensus 179 ~~l~~~igr~~ei~~~~~~L~~------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~ 246 (731)
T TIGR02639 179 GKIDPLIGREDELERTIQVLCR------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDM 246 (731)
T ss_pred CCCCcccCcHHHHHHHHHHHhc------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecH
Confidence 3678999999888877665533 123688999999
Q ss_pred ---------CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHH
Q 006411 454 ---------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQ 524 (646)
Q Consensus 454 ---------vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilne 524 (646)
.|+.+..++.+|+.|+...|+||||||||.|+. .+...+.. ..+-+.
T Consensus 247 ~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~---------------------~g~~~~~~---~~~~~~ 302 (731)
T TIGR02639 247 GSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVG---------------------AGATSGGS---MDASNL 302 (731)
T ss_pred HHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhc---------------------cCCCCCcc---HHHHHH
Confidence 456678999999999888899999999999987 22111111 112233
Q ss_pred HHHHHcCCCCCCCcEEEEEecCCC-----CcCCHHHHhccccEEEeCCCCC--------------------CCcHHHHHH
Q 006411 525 FLIEMEGFDSGSEQILLVGATNRP-----QELDEAARRRLTKRLYIPLPSS--------------------GYSGSDMKN 579 (646)
Q Consensus 525 LL~eLDGl~~~~~~VlVIaATNrP-----d~LDpALlRRFDr~I~IplPd~--------------------GySGADL~~ 579 (646)
|+..|. ++.|.+|||||.+ ..+|+|+.|||. .|+|+.|+. .|+...|..
T Consensus 303 L~~~l~-----~g~i~~IgaTt~~e~~~~~~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~ 376 (731)
T TIGR02639 303 LKPALS-----SGKLRCIGSTTYEEYKNHFEKDRALSRRFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEA 376 (731)
T ss_pred HHHHHh-----CCCeEEEEecCHHHHHHHhhhhHHHHHhCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHH
Confidence 333332 3579999999973 468999999997 689999975 467777777
Q ss_pred HHHHHhhhHHHHH--------HHhchhhhhhcc--cCCCCccHHHHHHHHhhcC--C--CCCHHHHHHHHHHHHHhC
Q 006411 580 LVKEASMGPLREA--------LRQGIEITRLQK--EDMQPVTLQDFENALPQVR--A--SVSLNELGIYEEWNKQFG 642 (646)
Q Consensus 580 Lc~eAa~~Airr~--------l~~~~~~~~~~~--~~~~~Vt~eDFe~AL~kvr--P--Svs~~dl~~ye~w~k~fg 642 (646)
++..+....-.+. ++.......+.. .....|+.+|+..++..+. | .+++++.+.+....+.+.
T Consensus 377 ~~~ls~ryi~~r~~P~kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~l~ 453 (731)
T TIGR02639 377 AVELSARYINDRFLPDKAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKNLK 453 (731)
T ss_pred HHHhhhcccccccCCHHHHHHHHHhhhhhhcCcccccccccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHh
Confidence 7766654322211 111110001111 1234599999999999885 3 456677777777665543
|
|
| >KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.5e-10 Score=132.20 Aligned_cols=164 Identities=23% Similarity=0.340 Sum_probs=121.2
Q ss_pred CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCC
Q 006411 454 IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFD 533 (646)
Q Consensus 454 vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~ 533 (646)
.+-.|..+..+|..|++.+|+|||+-+.|.|.- .+.+ ++.-.....+++++. +|-+.
T Consensus 472 ~~~~etkl~~~f~~a~~~~pavifl~~~dvl~i---------------------d~dg-ged~rl~~~i~~~ls-~e~~~ 528 (953)
T KOG0736|consen 472 ASHTETKLQAIFSRARRCSPAVLFLRNLDVLGI---------------------DQDG-GEDARLLKVIRHLLS-NEDFK 528 (953)
T ss_pred cchhHHHHHHHHHHHhhcCceEEEEeccceeee---------------------cCCC-chhHHHHHHHHHHHh-ccccc
Confidence 445667888889999999999999999999875 2222 222122223333333 44444
Q ss_pred CCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC------------------------------CCcHHHHHHHHHH
Q 006411 534 SGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS------------------------------GYSGSDMKNLVKE 583 (646)
Q Consensus 534 ~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~------------------------------GySGADL~~Lc~e 583 (646)
....+++||+||+..+.|.+.+++-|-..|.+|.|++ |||.+||..++..
T Consensus 529 ~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~ 608 (953)
T KOG0736|consen 529 FSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVAH 608 (953)
T ss_pred CCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHhcC
Confidence 3467899999999999999999998888999999986 9999999999998
Q ss_pred HhhhHHHHHHHhchh---hh---hhcccCCCCccHHHHHHHHhhcC------------CCCCHHHHHHHHHHHHH
Q 006411 584 ASMGPLREALRQGIE---IT---RLQKEDMQPVTLQDFENALPQVR------------ASVSLNELGIYEEWNKQ 640 (646)
Q Consensus 584 Aa~~Airr~l~~~~~---~~---~~~~~~~~~Vt~eDFe~AL~kvr------------PSvs~~dl~~ye~w~k~ 640 (646)
+...+..+...++.- .. .........++++||.+|+.+++ |.|+|+|++++++.+.+
T Consensus 609 ~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~aiGAPKIPnV~WdDVGGLeevK~e 683 (953)
T KOG0736|consen 609 SSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDAIGAPKIPNVSWDDVGGLEEVKTE 683 (953)
T ss_pred chHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHHHhhhhhcCCCCCCccchhcccCHHHHHHH
Confidence 866666555443310 00 00112336799999999999876 89999999999998865
|
|
| >KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.07 E-value=8.2e-10 Score=125.53 Aligned_cols=186 Identities=20% Similarity=0.300 Sum_probs=138.1
Q ss_pred ccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCC-----------------------------------Cc
Q 006411 411 DDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP-----------------------------------IG 455 (646)
Q Consensus 411 dDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPP-----------------------------------vG 455 (646)
.|++-+..+|++..+....|. ..+..|||+||+ ..
T Consensus 408 ~d~i~~~s~kke~~n~~~spv----------~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e 477 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSPV----------FRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLE 477 (952)
T ss_pred Cceeecchhhhhhhhhhcccc----------cccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHH
Confidence 678888888888777665652 124689999999 22
Q ss_pred hHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHH-cCCCC
Q 006411 456 EGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEM-EGFDS 534 (646)
Q Consensus 456 esek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eL-DGl~~ 534 (646)
...+.++.+|..|.+++|+||++|++|.|++. ....++........++.||+++ +-+..
T Consensus 478 ~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~--------------------s~~e~~q~~~~~~rla~flnqvi~~y~~ 537 (952)
T KOG0735|consen 478 KIQKFLNNVFSEALWYAPSIIVLDDLDCLASA--------------------SSNENGQDGVVSERLAAFLNQVIKIYLK 537 (952)
T ss_pred HHHHHHHHHHHHHHhhCCcEEEEcchhhhhcc--------------------CcccCCcchHHHHHHHHHHHHHHHHHHc
Confidence 23456777899999999999999999999871 1112222233344456666554 33444
Q ss_pred CCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC-------------------------------CCcHHHHHHHH
Q 006411 535 GSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS-------------------------------GYSGSDMKNLV 581 (646)
Q Consensus 535 ~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~-------------------------------GySGADL~~Lc 581 (646)
.+..|.||++.+..+.|.|-|.. +|+-++.+|.|+. ||...||..++
T Consensus 538 ~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifV 617 (952)
T KOG0735|consen 538 RNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFV 617 (952)
T ss_pred cCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHH
Confidence 35568999999999999999998 9999999999964 99999999999
Q ss_pred HHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCCC------------CCHHHHHHHHH
Q 006411 582 KEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRAS------------VSLNELGIYEE 636 (646)
Q Consensus 582 ~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrPS------------vs~~dl~~ye~ 636 (646)
..|...|+.+.+ +... ..++.++|.++|+.+.|. .-|+|++++.+
T Consensus 618 eRai~~a~leri---------s~~~-klltke~f~ksL~~F~P~aLR~ik~~k~tgi~w~digg~~~ 674 (952)
T KOG0735|consen 618 ERAIHEAFLERI---------SNGP-KLLTKELFEKSLKDFVPLALRGIKLVKSTGIRWEDIGGLFE 674 (952)
T ss_pred HHHHHHHHHHHh---------ccCc-ccchHHHHHHHHHhcChHHhhhccccccCCCCceecccHHH
Confidence 999998885532 2222 378999999999999874 55777776653
|
|
| >TIGR00763 lon ATP-dependent protease La | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.4e-09 Score=124.32 Aligned_cols=121 Identities=21% Similarity=0.324 Sum_probs=83.2
Q ss_pred cccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCC-------------------------------------
Q 006411 412 DIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPI------------------------------------- 454 (646)
Q Consensus 412 DIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPv------------------------------------- 454 (646)
++.|++.+|+.|.+++..+...+. .....+||||||+
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~------~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~ 394 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGK------MKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRR 394 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcC------CCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCC
Confidence 689999999999998876543221 1224799999991
Q ss_pred ---chHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcC
Q 006411 455 ---GEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEG 531 (646)
Q Consensus 455 ---Gesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDG 531 (646)
|.....+...|..|....| ||||||||.+.. .. .++ ..+.||..||.
T Consensus 395 ~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~---------------------~~--~~~------~~~aLl~~ld~ 444 (775)
T TIGR00763 395 TYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGS---------------------SF--RGD------PASALLEVLDP 444 (775)
T ss_pred ceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCC---------------------cc--CCC------HHHHHHHhcCH
Confidence 1112244556666665656 889999999975 21 111 23456666653
Q ss_pred -----CCC-------CCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCC
Q 006411 532 -----FDS-------GSEQILLVGATNRPQELDEAARRRLTKRLYIPLPS 569 (646)
Q Consensus 532 -----l~~-------~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd 569 (646)
+.. ...+|++|+|||.++.||++|++||+ .|+|+.|+
T Consensus 445 ~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~R~~-vi~~~~~~ 493 (775)
T TIGR00763 445 EQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRPLLDRME-VIELSGYT 493 (775)
T ss_pred HhcCccccccCCceeccCCEEEEEecCCchhCCHHHhCCee-EEecCCCC
Confidence 111 12479999999999999999999995 67888876
|
This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock. |
| >PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.6e-08 Score=118.47 Aligned_cols=87 Identities=29% Similarity=0.440 Sum_probs=63.5
Q ss_pred CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCC
Q 006411 454 IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFD 533 (646)
Q Consensus 454 vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~ 533 (646)
.|+.+..++.+|+.++...++||||||||.|++ .+...+.......++..+|
T Consensus 260 ~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g---------------------~g~~~~g~~d~~nlLkp~L------- 311 (758)
T PRK11034 260 RGDFEKRFKALLKQLEQDTNSILFIDEIHTIIG---------------------AGAASGGQVDAANLIKPLL------- 311 (758)
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhc---------------------cCCCCCcHHHHHHHHHHHH-------
Confidence 456678899999999888899999999999987 2221111111122222222
Q ss_pred CCCCcEEEEEecCCCC-----cCCHHHHhccccEEEeCCCCC
Q 006411 534 SGSEQILLVGATNRPQ-----ELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 534 ~~~~~VlVIaATNrPd-----~LDpALlRRFDr~I~IplPd~ 570 (646)
. ...+.|||||+.++ .+|+||.|||+ .|+|+.|+.
T Consensus 312 ~-~g~i~vIgATt~~E~~~~~~~D~AL~rRFq-~I~v~ePs~ 351 (758)
T PRK11034 312 S-SGKIRVIGSTTYQEFSNIFEKDRALARRFQ-KIDITEPSI 351 (758)
T ss_pred h-CCCeEEEecCChHHHHHHhhccHHHHhhCc-EEEeCCCCH
Confidence 2 45799999999875 68999999996 799999986
|
|
| >PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed | Back alignment and domain information |
|---|
Probab=98.88 E-value=7.8e-08 Score=101.72 Aligned_cols=195 Identities=18% Similarity=0.210 Sum_probs=115.4
Q ss_pred CCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhh----------------
Q 006411 406 PHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVAS---------------- 469 (646)
Q Consensus 406 p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar---------------- 469 (646)
.+.+|++++|.+++++.|...+..... ...++..+||||||+.++...++.+.....
T Consensus 20 rP~~~~~~vG~~~~~~~l~~~l~~~~~-------~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~~~~ 92 (328)
T PRK00080 20 RPKSLDEFIGQEKVKENLKIFIEAAKK-------RGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKPGD 92 (328)
T ss_pred CcCCHHHhcCcHHHHHHHHHHHHHHHh-------cCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccChHH
Confidence 456899999999999999888865221 124567899999995555555544433321
Q ss_pred -------hcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCC---------
Q 006411 470 -------CRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFD--------- 533 (646)
Q Consensus 470 -------~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~--------- 533 (646)
...++||||||||.+... ....|...|+...
T Consensus 93 l~~~l~~l~~~~vl~IDEi~~l~~~---------------------------------~~e~l~~~~e~~~~~~~l~~~~ 139 (328)
T PRK00080 93 LAAILTNLEEGDVLFIDEIHRLSPV---------------------------------VEEILYPAMEDFRLDIMIGKGP 139 (328)
T ss_pred HHHHHHhcccCCEEEEecHhhcchH---------------------------------HHHHHHHHHHhcceeeeeccCc
Confidence 124789999999988530 0011222222211
Q ss_pred -C-----CCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC----------------CCcHHHHHHHHHHHhhhH--H
Q 006411 534 -S-----GSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS----------------GYSGSDMKNLVKEASMGP--L 589 (646)
Q Consensus 534 -~-----~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~----------------GySGADL~~Lc~eAa~~A--i 589 (646)
. .-..+.+|+|||++..++++|++||...+.++.|+. .++..-+..|++.+.-.+ +
T Consensus 140 ~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a 219 (328)
T PRK00080 140 AARSIRLDLPPFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIA 219 (328)
T ss_pred cccceeecCCCceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHH
Confidence 0 013478899999999999999999999999998764 223322333332221110 0
Q ss_pred HHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCCC---CCHHHHHHHHHHHHHhC
Q 006411 590 REALRQGIEITRLQKEDMQPVTLQDFENALPQVRAS---VSLNELGIYEEWNKQFG 642 (646)
Q Consensus 590 rr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrPS---vs~~dl~~ye~w~k~fg 642 (646)
...+...... ........|+.+++..++..+... ....+...+..+.+.|.
T Consensus 220 ~~~l~~~~~~--a~~~~~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~ 273 (328)
T PRK00080 220 NRLLRRVRDF--AQVKGDGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFG 273 (328)
T ss_pred HHHHHHHHHH--HHHcCCCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcC
Confidence 0111100000 001123568899999999887655 34455555555766654
|
|
| >TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.9e-08 Score=99.31 Aligned_cols=122 Identities=25% Similarity=0.314 Sum_probs=82.4
Q ss_pred ccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhh-------------------
Q 006411 409 RWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVAS------------------- 469 (646)
Q Consensus 409 sfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar------------------- 469 (646)
+|+|++|.+++++.|..++...... ..++..+||||||+.++...++.+-....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~l~~ 74 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR-------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLAA 74 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCchhHHH
Confidence 6999999999999999888653221 13456799999994444444444433221
Q ss_pred ----hcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCC------------
Q 006411 470 ----CRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFD------------ 533 (646)
Q Consensus 470 ----~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~------------ 533 (646)
...+.||||||||.+... ....|+..|+...
T Consensus 75 ~l~~~~~~~vl~iDEi~~l~~~---------------------------------~~e~l~~~~~~~~~~~v~~~~~~~~ 121 (305)
T TIGR00635 75 ILTNLEEGDVLFIDEIHRLSPA---------------------------------VEELLYPAMEDFRLDIVIGKGPSAR 121 (305)
T ss_pred HHHhcccCCEEEEehHhhhCHH---------------------------------HHHHhhHHHhhhheeeeeccCcccc
Confidence 124679999999988541 0111222222111
Q ss_pred ---CCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 534 ---SGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 534 ---~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
.....+.+|++||++..|++++++||...+.++.|+.
T Consensus 122 ~~~~~~~~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~ 161 (305)
T TIGR00635 122 SVRLDLPPFTLVGATTRAGMLTSPLRDRFGIILRLEFYTV 161 (305)
T ss_pred ceeecCCCeEEEEecCCccccCHHHHhhcceEEEeCCCCH
Confidence 0123488999999999999999999998899998865
|
RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions. |
| >PRK10865 protein disaggregation chaperone; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.3e-08 Score=117.31 Aligned_cols=120 Identities=21% Similarity=0.415 Sum_probs=84.4
Q ss_pred cccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCC----------------------------------
Q 006411 408 VRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP---------------------------------- 453 (646)
Q Consensus 408 VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPP---------------------------------- 453 (646)
=++++|+|-+.....+.+++.. .....+||+|||
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~r------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l 242 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM 242 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHhc------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEeh
Confidence 4678899998865555554433 123578899999
Q ss_pred ---------CchHHHHHHHHHHHhh-hcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHH
Q 006411 454 ---------IGEGEKLVRALFGVAS-CRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKT 523 (646)
Q Consensus 454 ---------vGesek~Vr~lF~~Ar-~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~riln 523 (646)
.|+.+..++.+|+.+. ...|+|||||||+.|.+ .+++.+..... .+
T Consensus 243 ~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~---------------------~~~~~~~~d~~-~~-- 298 (857)
T PRK10865 243 GALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVG---------------------AGKADGAMDAG-NM-- 298 (857)
T ss_pred hhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhcc---------------------CCCCccchhHH-HH--
Confidence 4566778999998754 45799999999999987 33233332222 22
Q ss_pred HHHHHHcCCCCCCCcEEEEEecCCCC-----cCCHHHHhccccEEEeCCCCC
Q 006411 524 QFLIEMEGFDSGSEQILLVGATNRPQ-----ELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 524 eLL~eLDGl~~~~~~VlVIaATNrPd-----~LDpALlRRFDr~I~IplPd~ 570 (646)
|.-.| . .+.+.+||||+.++ .+|+|+.|||+ .|+++.|+.
T Consensus 299 -lkp~l----~-~g~l~~IgaTt~~e~r~~~~~d~al~rRf~-~i~v~eP~~ 343 (857)
T PRK10865 299 -LKPAL----A-RGELHCVGATTLDEYRQYIEKDAALERRFQ-KVFVAEPSV 343 (857)
T ss_pred -hcchh----h-cCCCeEEEcCCCHHHHHHhhhcHHHHhhCC-EEEeCCCCH
Confidence 22111 2 45799999999987 59999999998 578999975
|
|
| >TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family | Back alignment and domain information |
|---|
Probab=98.70 E-value=8e-08 Score=114.03 Aligned_cols=121 Identities=18% Similarity=0.327 Sum_probs=83.7
Q ss_pred CcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCC---------------------------------
Q 006411 407 HVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP--------------------------------- 453 (646)
Q Consensus 407 ~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPP--------------------------------- 453 (646)
+=++++++|-++....+.+.+.. ....++||+|||
T Consensus 183 ~~~ld~~iGr~~ei~~~i~~l~r------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~ 250 (852)
T TIGR03345 183 EGKIDPVLGRDDEIRQMIDILLR------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLD 250 (852)
T ss_pred CCCCCcccCCHHHHHHHHHHHhc------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEee
Confidence 34678999988865555443322 113577888888
Q ss_pred ----------CchHHHHHHHHHHHhhh-cCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHH
Q 006411 454 ----------IGEGEKLVRALFGVASC-RQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLK 522 (646)
Q Consensus 454 ----------vGesek~Vr~lF~~Ar~-~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~ril 522 (646)
.|+.+..++.+|+.++. ..++|||||||+.|.. .+.+.+... +.
T Consensus 251 l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~---------------------~g~~~~~~d----~~ 305 (852)
T TIGR03345 251 LGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIG---------------------AGGQAGQGD----AA 305 (852)
T ss_pred hhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhcc---------------------CCCcccccc----HH
Confidence 46667899999999865 4689999999999986 222222111 22
Q ss_pred HHHHHHHcCCCCCCCcEEEEEecCCC-----CcCCHHHHhccccEEEeCCCCC
Q 006411 523 TQFLIEMEGFDSGSEQILLVGATNRP-----QELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 523 neLL~eLDGl~~~~~~VlVIaATNrP-----d~LDpALlRRFDr~I~IplPd~ 570 (646)
+.|+-.| . .+.+.+||||+.. ..+|+||+|||. .|+|+.|+.
T Consensus 306 n~Lkp~l----~-~G~l~~IgaTT~~e~~~~~~~d~AL~rRf~-~i~v~eps~ 352 (852)
T TIGR03345 306 NLLKPAL----A-RGELRTIAATTWAEYKKYFEKDPALTRRFQ-VVKVEEPDE 352 (852)
T ss_pred HHhhHHh----h-CCCeEEEEecCHHHHhhhhhccHHHHHhCe-EEEeCCCCH
Confidence 2233222 2 4579999999974 359999999995 789999986
|
Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. |
| >TIGR02902 spore_lonB ATP-dependent protease LonB | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.8e-07 Score=105.80 Aligned_cols=59 Identities=19% Similarity=0.321 Sum_probs=44.8
Q ss_pred hcccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhh
Q 006411 400 EIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASC 470 (646)
Q Consensus 400 ~i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~ 470 (646)
....+..+.+|++|.|.+..++.|+..+..+ .+..|||||||+.+++...+.+.+.+++
T Consensus 54 ~~~~~~rp~~f~~iiGqs~~i~~l~~al~~~------------~~~~vLi~Ge~GtGKt~lAr~i~~~~~~ 112 (531)
T TIGR02902 54 PLSEKTRPKSFDEIIGQEEGIKALKAALCGP------------NPQHVIIYGPPGVGKTAAARLVLEEAKK 112 (531)
T ss_pred hHHHhhCcCCHHHeeCcHHHHHHHHHHHhCC------------CCceEEEECCCCCCHHHHHHHHHHHhhh
Confidence 3455677899999999999999998664321 2467999999977777788877776643
|
Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis. |
| >PRK07940 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.7e-07 Score=102.58 Aligned_cols=123 Identities=20% Similarity=0.271 Sum_probs=83.3
Q ss_pred ccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHH------------------------------
Q 006411 409 RWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGE------------------------------ 458 (646)
Q Consensus 409 sfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGese------------------------------ 458 (646)
.|++|+|.+.+++.|+.++..+...+..+. +..+.++||||||+-++.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~--~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~ 80 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAG--SGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVL 80 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccC--CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHh
Confidence 589999999999999999988665333321 235689999999921111
Q ss_pred -------------------HHHHHHHHHhhhc----CCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCc
Q 006411 459 -------------------KLVRALFGVASCR----QPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEH 515 (646)
Q Consensus 459 -------------------k~Vr~lF~~Ar~~----aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~ 515 (646)
..||.+++.+... ...|+||||+|.|-.
T Consensus 81 ~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~----------------------------- 131 (394)
T PRK07940 81 AGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTE----------------------------- 131 (394)
T ss_pred cCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCH-----------------------------
Confidence 1345555555421 123666666666633
Q ss_pred hhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 516 ESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 516 e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
...|.||..|+.... ++++|.+|+.|+.|.|++++|+ ..|+|++|+.
T Consensus 132 ----~aanaLLk~LEep~~---~~~fIL~a~~~~~llpTIrSRc-~~i~f~~~~~ 178 (394)
T PRK07940 132 ----RAANALLKAVEEPPP---RTVWLLCAPSPEDVLPTIRSRC-RHVALRTPSV 178 (394)
T ss_pred ----HHHHHHHHHhhcCCC---CCeEEEEECChHHChHHHHhhC-eEEECCCCCH
Confidence 235778888876433 4555555555999999999998 6889999965
|
|
| >CHL00095 clpC Clp protease ATP binding subunit | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.7e-07 Score=110.88 Aligned_cols=121 Identities=21% Similarity=0.364 Sum_probs=89.1
Q ss_pred CcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCC---------------------------------
Q 006411 407 HVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP--------------------------------- 453 (646)
Q Consensus 407 ~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPP--------------------------------- 453 (646)
+-.|+.|+|-+..++.|.+++.. ..+.++||+|||
T Consensus 175 ~~~~~~~igr~~ei~~~~~~L~r------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 175 DGNLDPVIGREKEIERVIQILGR------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred cCCCCCCCCcHHHHHHHHHHHcc------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 44588999999999998887644 234689999999
Q ss_pred ----------CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHH
Q 006411 454 ----------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKT 523 (646)
Q Consensus 454 ----------vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~riln 523 (646)
.|+.+..++.+|+.++...++|||||||+.|++ .+...+... +.+
T Consensus 243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~---------------------~g~~~g~~~----~a~ 297 (821)
T CHL00095 243 IGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIG---------------------AGAAEGAID----AAN 297 (821)
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhc---------------------CCCCCCccc----HHH
Confidence 466788999999999888899999999999987 222222221 122
Q ss_pred HHHHHHcCCCCCCCcEEEEEecCCCC-----cCCHHHHhccccEEEeCCCCC
Q 006411 524 QFLIEMEGFDSGSEQILLVGATNRPQ-----ELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 524 eLL~eLDGl~~~~~~VlVIaATNrPd-----~LDpALlRRFDr~I~IplPd~ 570 (646)
-|...|. .+.+.+||||+..+ ..|+++.|||.. |.++.|+.
T Consensus 298 lLkp~l~-----rg~l~~IgaTt~~ey~~~ie~D~aL~rRf~~-I~v~ep~~ 343 (821)
T CHL00095 298 ILKPALA-----RGELQCIGATTLDEYRKHIEKDPALERRFQP-VYVGEPSV 343 (821)
T ss_pred HhHHHHh-----CCCcEEEEeCCHHHHHHHHhcCHHHHhcceE-EecCCCCH
Confidence 2222221 35689999999764 589999999975 68888764
|
|
| >TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.1e-07 Score=110.55 Aligned_cols=121 Identities=20% Similarity=0.367 Sum_probs=82.9
Q ss_pred CcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCC---------------------------------
Q 006411 407 HVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP--------------------------------- 453 (646)
Q Consensus 407 ~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPP--------------------------------- 453 (646)
+=.++.++|-++....+.+.+.. .....+||+|||
T Consensus 169 ~~~~~~~igr~~ei~~~~~~l~r------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~ 236 (852)
T TIGR03346 169 EGKLDPVIGRDEEIRRTIQVLSR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALD 236 (852)
T ss_pred CCCCCcCCCcHHHHHHHHHHHhc------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEee
Confidence 44678899988866655554433 123567788888
Q ss_pred ----------CchHHHHHHHHHHHhhhc-CCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHH
Q 006411 454 ----------IGEGEKLVRALFGVASCR-QPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLK 522 (646)
Q Consensus 454 ----------vGesek~Vr~lF~~Ar~~-aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~ril 522 (646)
.|+.++.++.+|+.+... .|+|||||||+.|+. .+...+.. ...
T Consensus 237 ~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~---------------------~g~~~~~~----d~~ 291 (852)
T TIGR03346 237 MGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVG---------------------AGKAEGAM----DAG 291 (852)
T ss_pred HHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhc---------------------CCCCcchh----HHH
Confidence 355667889999988654 699999999999986 22222211 122
Q ss_pred HHHHHHHcCCCCCCCcEEEEEecCCC-----CcCCHHHHhccccEEEeCCCCC
Q 006411 523 TQFLIEMEGFDSGSEQILLVGATNRP-----QELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 523 neLL~eLDGl~~~~~~VlVIaATNrP-----d~LDpALlRRFDr~I~IplPd~ 570 (646)
+.|.-.+ . ...+.+||||+.+ ..+|+|+.|||.. |+++.|+.
T Consensus 292 ~~Lk~~l----~-~g~i~~IgaTt~~e~r~~~~~d~al~rRf~~-i~v~~p~~ 338 (852)
T TIGR03346 292 NMLKPAL----A-RGELHCIGATTLDEYRKYIEKDAALERRFQP-VFVDEPTV 338 (852)
T ss_pred HHhchhh----h-cCceEEEEeCcHHHHHHHhhcCHHHHhcCCE-EEeCCCCH
Confidence 2222222 2 4579999999987 4689999999964 78999974
|
Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. |
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.3e-06 Score=92.62 Aligned_cols=34 Identities=18% Similarity=0.374 Sum_probs=28.2
Q ss_pred CcEEEEEecCCCC---cCCHHHHhccc-cEEEeCCCCC
Q 006411 537 EQILLVGATNRPQ---ELDEAARRRLT-KRLYIPLPSS 570 (646)
Q Consensus 537 ~~VlVIaATNrPd---~LDpALlRRFD-r~I~IplPd~ 570 (646)
.+|.+|++||.++ .+++.+.+||. ..|+|++++.
T Consensus 164 ~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~ 201 (365)
T TIGR02928 164 AKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDA 201 (365)
T ss_pred CeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCH
Confidence 5799999999987 58889988885 6788888764
|
Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other. |
| >PRK14962 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.2e-06 Score=93.69 Aligned_cols=120 Identities=18% Similarity=0.211 Sum_probs=80.2
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHH---------------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGV--------------- 467 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~--------------- 467 (646)
.+..+-+|+||+|.+++++.|+..+.. +..+.++||||||+.+.....+.+-..
T Consensus 6 ~kyRP~~~~divGq~~i~~~L~~~i~~-----------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c 74 (472)
T PRK14962 6 RKYRPKTFSEVVGQDHVKKLIINALKK-----------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNEC 74 (472)
T ss_pred HHHCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCccc
Confidence 456688999999999999988876654 224578999999944343333333222
Q ss_pred ----------------------------------hhhc----CCeeeeehhhhHHhhhcccccccchhhhhhhhhhcccc
Q 006411 468 ----------------------------------ASCR----QPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQR 509 (646)
Q Consensus 468 ----------------------------------Ar~~----aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R 509 (646)
+... ...||||||+|.|..
T Consensus 75 ~~c~~i~~g~~~dv~el~aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~----------------------- 131 (472)
T PRK14962 75 RACRSIDEGTFMDVIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK----------------------- 131 (472)
T ss_pred HHHHHHhcCCCCccEEEeCcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH-----------------------
Confidence 2110 123556666655532
Q ss_pred CCCCCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 510 KSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 510 ~s~~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
...+.||..|+... ..+++|++|+.|..|++++++|+. .+.|..|+.
T Consensus 132 ----------~a~~~LLk~LE~p~---~~vv~Ilattn~~kl~~~L~SR~~-vv~f~~l~~ 178 (472)
T PRK14962 132 ----------EAFNALLKTLEEPP---SHVVFVLATTNLEKVPPTIISRCQ-VIEFRNISD 178 (472)
T ss_pred ----------HHHHHHHHHHHhCC---CcEEEEEEeCChHhhhHHHhcCcE-EEEECCccH
Confidence 23567777777643 367777888889999999999985 678887765
|
|
| >PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.5e-07 Score=76.62 Aligned_cols=35 Identities=54% Similarity=1.011 Sum_probs=33.0
Q ss_pred CCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhC
Q 006411 608 QPVTLQDFENALPQVRASVSLNELGIYEEWNKQFG 642 (646)
Q Consensus 608 ~~Vt~eDFe~AL~kvrPSvs~~dl~~ye~w~k~fg 642 (646)
.+|+++||+.||++++|||+.+||+.|++|.++||
T Consensus 28 p~it~~DF~~Al~~~kpSVs~~dl~~ye~w~~~FG 62 (62)
T PF09336_consen 28 PPITMEDFEEALKKVKPSVSQEDLKKYEEWTKEFG 62 (62)
T ss_dssp HHBCHHHHHHHHHTCGGSS-HHHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 47999999999999999999999999999999998
|
It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A .... |
| >PRK14961 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=6.3e-06 Score=88.90 Aligned_cols=141 Identities=18% Similarity=0.191 Sum_probs=83.7
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhc-----CC----
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCR-----QP---- 473 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~-----aP---- 473 (646)
.+..+.+|+||+|.+.+++.|+..+.. +..+..+||+|||+.++...++.+.+...+. .|
T Consensus 8 ~kyrP~~~~~iiGq~~~~~~l~~~~~~-----------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c 76 (363)
T PRK14961 8 RKWRPQYFRDIIGQKHIVTAISNGLSL-----------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKC 76 (363)
T ss_pred HHhCCCchhhccChHHHHHHHHHHHHc-----------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 456678999999999999999887754 2235789999999555555555555443211 12
Q ss_pred ------------eeeee--------hhhhHHhhhcccccccchhhhhhhhhhccccCC---CCCchhhHHHHHHHHHHHc
Q 006411 474 ------------AVIFV--------DEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKS---DGEHESSRRLKTQFLIEME 530 (646)
Q Consensus 474 ------------sIIFI--------DEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s---~~~~e~s~rilneLL~eLD 530 (646)
.++.+ |++..+... .......+.+.- +.-+..+....+.||..|+
T Consensus 77 ~~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~------------~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lE 144 (363)
T PRK14961 77 IICKEIEKGLCLDLIEIDAASRTKVEEMREILDN------------IYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLE 144 (363)
T ss_pred HHHHHHhcCCCCceEEecccccCCHHHHHHHHHH------------HhcCcccCCceEEEEEChhhcCHHHHHHHHHHHh
Confidence 23322 222222220 000000000000 0111222345677888887
Q ss_pred CCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 531 GFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 531 Gl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
... ..+.+|++|+.++.|.++++.|+ ..+.|++|+.
T Consensus 145 e~~---~~~~fIl~t~~~~~l~~tI~SRc-~~~~~~~l~~ 180 (363)
T PRK14961 145 EPP---QHIKFILATTDVEKIPKTILSRC-LQFKLKIISE 180 (363)
T ss_pred cCC---CCeEEEEEcCChHhhhHHHHhhc-eEEeCCCCCH
Confidence 643 36777888888999999999888 5678888764
|
|
| >TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.7e-06 Score=88.75 Aligned_cols=144 Identities=19% Similarity=0.236 Sum_probs=83.0
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhc-----------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCR----------- 471 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~----------- 471 (646)
++..+.+|+||+|.+.+++.|.+.+.. +..+..+||||||+.+.....+.+-+...+.
T Consensus 6 ~~~rp~~~~~iig~~~~~~~l~~~~~~-----------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c 74 (355)
T TIGR02397 6 RKYRPQTFEDVIGQEHIVQTLKNAIKN-----------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNEC 74 (355)
T ss_pred HHhCCCcHhhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 456788999999999999999987743 2345789999999444444444443332211
Q ss_pred ----------CCeeeeehh--------hhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCC
Q 006411 472 ----------QPAVIFVDE--------IDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFD 533 (646)
Q Consensus 472 ----------aPsIIFIDE--------IDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~ 533 (646)
.|.++.+|. +..+... +...+++...+.--- +..+.......+.||..|+...
T Consensus 75 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~p~~~~~~vvii---dea~~l~~~~~~~Ll~~le~~~ 145 (355)
T TIGR02397 75 ESCKEINSGSSLDVIEIDAASNNGVDDIREILDN------VKYAPSSGKYKVYII---DEVHMLSKSAFNALLKTLEEPP 145 (355)
T ss_pred HHHHHHhcCCCCCEEEeeccccCCHHHHHHHHHH------HhcCcccCCceEEEE---eChhhcCHHHHHHHHHHHhCCc
Confidence 233454432 2222220 000000000000000 0011112345678888887643
Q ss_pred CCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 534 SGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 534 ~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
..+++|++|+.++.|.+++++|+. .+++++|+.
T Consensus 146 ---~~~~lIl~~~~~~~l~~~l~sr~~-~~~~~~~~~ 178 (355)
T TIGR02397 146 ---EHVVFILATTEPHKIPATILSRCQ-RFDFKRIPL 178 (355)
T ss_pred ---cceeEEEEeCCHHHHHHHHHhhee-EEEcCCCCH
Confidence 367788888999999999999984 678877654
|
This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis. |
| >PRK04195 replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.3e-06 Score=94.28 Aligned_cols=126 Identities=23% Similarity=0.254 Sum_probs=85.3
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHH----------------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFG---------------- 466 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~---------------- 466 (646)
+++.+.+++||+|.+.+++.|++++.... .+.|++.+||||||+.+....++.+..
T Consensus 6 eKyrP~~l~dlvg~~~~~~~l~~~l~~~~--------~g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~ 77 (482)
T PRK04195 6 EKYRPKTLSDVVGNEKAKEQLREWIESWL--------KGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT 77 (482)
T ss_pred hhcCCCCHHHhcCCHHHHHHHHHHHHHHh--------cCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc
Confidence 46778899999999999999999986522 234578999999994444444443322
Q ss_pred ---------Hhhh------cCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcC
Q 006411 467 ---------VASC------RQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEG 531 (646)
Q Consensus 467 ---------~Ar~------~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDG 531 (646)
.+.. ..+.||+|||+|.|.. . .+ ...++.|+..++.
T Consensus 78 ~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~---------------------~----~d----~~~~~aL~~~l~~ 128 (482)
T PRK04195 78 ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHG---------------------N----ED----RGGARAILELIKK 128 (482)
T ss_pred HHHHHHHHHHhhccCcccCCCCeEEEEecCccccc---------------------c----cc----hhHHHHHHHHHHc
Confidence 2211 2477999999998853 1 01 1234566666653
Q ss_pred CCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 532 FDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 532 l~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
. +..||++||.++.+++..+|+....|.|+.|+.
T Consensus 129 ~-----~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~ 162 (482)
T PRK04195 129 A-----KQPIILTANDPYDPSLRELRNACLMIEFKRLST 162 (482)
T ss_pred C-----CCCEEEeccCccccchhhHhccceEEEecCCCH
Confidence 2 345677899999999855554456789999876
|
|
| >PHA02544 44 clamp loader, small subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.4e-06 Score=87.19 Aligned_cols=122 Identities=19% Similarity=0.140 Sum_probs=81.7
Q ss_pred ccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHH--------------
Q 006411 402 MDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGV-------------- 467 (646)
Q Consensus 402 ~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~-------------- 467 (646)
..++.+-+++|++|-+++++.|+..+.. +..|..+||||||+.+....++.+...
T Consensus 12 ~~kyrP~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~~~ 80 (316)
T PHA02544 12 EQKYRPSTIDECILPAADKETFKSIVKK-----------GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSDCR 80 (316)
T ss_pred eeccCCCcHHHhcCcHHHHHHHHHHHhc-----------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCccc
Confidence 3567788999999999999999888752 234567778999944444444433221
Q ss_pred -----------hhh----cCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCC
Q 006411 468 -----------ASC----RQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGF 532 (646)
Q Consensus 468 -----------Ar~----~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl 532 (646)
+.. ..+.||||||+|.+.. ......|...|+..
T Consensus 81 ~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~--------------------------------~~~~~~L~~~le~~ 128 (316)
T PHA02544 81 IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL--------------------------------ADAQRHLRSFMEAY 128 (316)
T ss_pred HHHHHHHHHHHHHhhcccCCCeEEEEECcccccC--------------------------------HHHHHHHHHHHHhc
Confidence 111 1466778888776622 01122344445554
Q ss_pred CCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 533 DSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 533 ~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
. .++.+|+|||.+..+++++++||. .+.++.|+.
T Consensus 129 ~---~~~~~Ilt~n~~~~l~~~l~sR~~-~i~~~~p~~ 162 (316)
T PHA02544 129 S---KNCSFIITANNKNGIIEPLRSRCR-VIDFGVPTK 162 (316)
T ss_pred C---CCceEEEEcCChhhchHHHHhhce-EEEeCCCCH
Confidence 3 356788899999999999999995 678888864
|
|
| >PRK14970 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.7e-05 Score=85.00 Aligned_cols=120 Identities=17% Similarity=0.193 Sum_probs=79.5
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHH---------------------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLV--------------------- 461 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~V--------------------- 461 (646)
.+..+.+|+||+|.+.+++.|...+.. +..+..+||||||+.+....+
T Consensus 9 ~k~rP~~~~~iig~~~~~~~l~~~i~~-----------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~ 77 (367)
T PRK14970 9 RKYRPQTFDDVVGQSHITNTLLNAIEN-----------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSF 77 (367)
T ss_pred HHHCCCcHHhcCCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCc
Confidence 456789999999999999999888754 234579999999933333333
Q ss_pred ----------------HHHHHHhhhc----CCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHH
Q 006411 462 ----------------RALFGVASCR----QPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRL 521 (646)
Q Consensus 462 ----------------r~lF~~Ar~~----aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~ri 521 (646)
+.+++.+... .+.||||||+|.+.. ..
T Consensus 78 ~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~---------------------------------~~ 124 (367)
T PRK14970 78 NIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS---------------------------------AA 124 (367)
T ss_pred ceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH---------------------------------HH
Confidence 3333333211 123555555554422 23
Q ss_pred HHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 522 KTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 522 lneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
.+.|+..|+... ...++|++|+.+..+.+++.+|+. .+.++.|+.
T Consensus 125 ~~~ll~~le~~~---~~~~~Il~~~~~~kl~~~l~sr~~-~v~~~~~~~ 169 (367)
T PRK14970 125 FNAFLKTLEEPP---AHAIFILATTEKHKIIPTILSRCQ-IFDFKRITI 169 (367)
T ss_pred HHHHHHHHhCCC---CceEEEEEeCCcccCCHHHHhcce-eEecCCccH
Confidence 577887776642 345666677788999999998874 578887764
|
|
| >PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.5e-05 Score=83.92 Aligned_cols=48 Identities=17% Similarity=0.312 Sum_probs=34.5
Q ss_pred HHHHHHHHHcCCCCCCCcEEEEEecCCCC---cCCHHHHhccc-cEEEeCCCCC
Q 006411 521 LKTQFLIEMEGFDSGSEQILLVGATNRPQ---ELDEAARRRLT-KRLYIPLPSS 570 (646)
Q Consensus 521 ilneLL~eLDGl~~~~~~VlVIaATNrPd---~LDpALlRRFD-r~I~IplPd~ 570 (646)
++..|+..++.... .+|.||+++|.++ .+|+.+.+||. ..|.+++++.
T Consensus 158 ~l~~l~~~~~~~~~--~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~ 209 (394)
T PRK00411 158 VLYSLLRAHEEYPG--ARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTA 209 (394)
T ss_pred HHHHHHHhhhccCC--CeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCH
Confidence 56777776666543 3788999988764 57888888774 5678887764
|
|
| >PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair | Back alignment and domain information |
|---|
Probab=98.25 E-value=5.1e-06 Score=85.08 Aligned_cols=134 Identities=24% Similarity=0.326 Sum_probs=80.6
Q ss_pred CCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchH-------------------------HHH
Q 006411 406 PHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEG-------------------------EKL 460 (646)
Q Consensus 406 p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGes-------------------------ek~ 460 (646)
.+-+|+|++|.+++++.++-.+..-..+ ..+...+||||||+-++ ..-
T Consensus 19 RP~~L~efiGQ~~l~~~l~i~i~aa~~r-------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~~d 91 (233)
T PF05496_consen 19 RPKSLDEFIGQEHLKGNLKILIRAAKKR-------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKAGD 91 (233)
T ss_dssp S-SSCCCS-S-HHHHHHHHHHHHHHHCT-------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SCHH
T ss_pred CCCCHHHccCcHHHHhhhHHHHHHHHhc-------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhHHH
Confidence 4568999999999999987666542221 23456899999991111 112
Q ss_pred HHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCC-------
Q 006411 461 VRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFD------- 533 (646)
Q Consensus 461 Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~------- 533 (646)
+..++... ....|||||||+.+-. .+-..|+..|+...
T Consensus 92 l~~il~~l--~~~~ILFIDEIHRlnk---------------------------------~~qe~LlpamEd~~idiiiG~ 136 (233)
T PF05496_consen 92 LAAILTNL--KEGDILFIDEIHRLNK---------------------------------AQQEILLPAMEDGKIDIIIGK 136 (233)
T ss_dssp HHHHHHT----TT-EEEECTCCC--H---------------------------------HHHHHHHHHHHCSEEEEEBSS
T ss_pred HHHHHHhc--CCCcEEEEechhhccH---------------------------------HHHHHHHHHhccCeEEEEecc
Confidence 22232222 2467999999998853 12334555665332
Q ss_pred -CC-------CCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCCCCcHHHHHHHHHHHh
Q 006411 534 -SG-------SEQILLVGATNRPQELDEAARRRLTKRLYIPLPSSGYSGSDMKNLVKEAS 585 (646)
Q Consensus 534 -~~-------~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~GySGADL~~Lc~eAa 585 (646)
.. -.+..+||||.+...|.+.|+.||.-...+.. |+..+|..++..++
T Consensus 137 g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~----Y~~~el~~Iv~r~a 192 (233)
T PF05496_consen 137 GPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEF----YSEEELAKIVKRSA 192 (233)
T ss_dssp SSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE--------THHHHHHHHHHCC
T ss_pred ccccceeeccCCCceEeeeeccccccchhHHhhcceecchhc----CCHHHHHHHHHHHH
Confidence 10 13578999999999999999999988777765 89999999997655
|
Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B. |
| >PRK14963 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.8e-05 Score=89.38 Aligned_cols=142 Identities=20% Similarity=0.299 Sum_probs=87.8
Q ss_pred ccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhc----------
Q 006411 402 MDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCR---------- 471 (646)
Q Consensus 402 ~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~---------- 471 (646)
..++.+.+|+||+|.+.+++.|+.++.. +..+..+||||||+.+....++.+.....+.
T Consensus 5 ~~KyRP~~~~dvvGq~~v~~~L~~~i~~-----------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C 73 (504)
T PRK14963 5 YQRARPITFDEVVGQEHVKEVLLAALRQ-----------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGEC 73 (504)
T ss_pred HHhhCCCCHHHhcChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcC
Confidence 4567789999999999999999988764 2345678999999655555665555444321
Q ss_pred ----------CCeeeeehh--------hhHHhhhcccccccchhhhhhhhhhccccCC---CCCchhhHHHHHHHHHHHc
Q 006411 472 ----------QPAVIFVDE--------IDSLLSQMLPYMHVHHIKLFCLKRFYFQRKS---DGEHESSRRLKTQFLIEME 530 (646)
Q Consensus 472 ----------aPsIIFIDE--------IDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s---~~~~e~s~rilneLL~eLD 530 (646)
.|.++.|+- |..+.. ......+...+.- +.-+..+....+.||..|+
T Consensus 74 ~sc~~i~~~~h~dv~el~~~~~~~vd~iR~l~~------------~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LE 141 (504)
T PRK14963 74 ESCLAVRRGAHPDVLEIDAASNNSVEDVRDLRE------------KVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLE 141 (504)
T ss_pred hhhHHHhcCCCCceEEecccccCCHHHHHHHHH------------HHhhccccCCCeEEEEECccccCHHHHHHHHHHHH
Confidence 233554432 222211 0000000000000 1112223456788888887
Q ss_pred CCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 531 GFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 531 Gl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
... ..+++|.+|+.+..|.+++++|+. ++.|..|+.
T Consensus 142 ep~---~~t~~Il~t~~~~kl~~~I~SRc~-~~~f~~ls~ 177 (504)
T PRK14963 142 EPP---EHVIFILATTEPEKMPPTILSRTQ-HFRFRRLTE 177 (504)
T ss_pred hCC---CCEEEEEEcCChhhCChHHhcceE-EEEecCCCH
Confidence 643 367888888999999999999875 678887754
|
|
| >PRK10787 DNA-binding ATP-dependent protease La; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.3e-05 Score=94.88 Aligned_cols=133 Identities=21% Similarity=0.341 Sum_probs=82.1
Q ss_pred cccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHH-------------------------------
Q 006411 412 DIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKL------------------------------- 460 (646)
Q Consensus 412 DIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~------------------------------- 460 (646)
|+.|++.+|+.|.+++........ .....++|+|||+.+....
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~~------~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~ 396 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVNK------IKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRR 396 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhccc------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchh
Confidence 689999999999998875332111 1234699999992222221
Q ss_pred ---------HHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcC
Q 006411 461 ---------VRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEG 531 (646)
Q Consensus 461 ---------Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDG 531 (646)
+...+..+....| ||||||||.+.. ... ++ ..+.||..||.
T Consensus 397 ~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~---------------------~~~--g~------~~~aLlevld~ 446 (784)
T PRK10787 397 TYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSS---------------------DMR--GD------PASALLEVLDP 446 (784)
T ss_pred ccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhccc---------------------ccC--CC------HHHHHHHHhcc
Confidence 1222333333334 899999998865 211 11 24566666663
Q ss_pred C-----CC-------CCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCCCCcHHHHHHHHHHHhh
Q 006411 532 F-----DS-------GSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSSGYSGSDMKNLVKEASM 586 (646)
Q Consensus 532 l-----~~-------~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~GySGADL~~Lc~eAa~ 586 (646)
- .. .-.+|++|+|||.. .|++||+.||+ .|.++ +|+..++..|++....
T Consensus 447 ~~~~~~~d~~~~~~~dls~v~~i~TaN~~-~i~~aLl~R~~-ii~~~----~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 447 EQNVAFSDHYLEVDYDLSDVMFVATSNSM-NIPAPLLDRME-VIRLS----GYTEDEKLNIAKRHLL 507 (784)
T ss_pred ccEEEEecccccccccCCceEEEEcCCCC-CCCHHHhccee-eeecC----CCCHHHHHHHHHHhhh
Confidence 1 10 12579999999987 59999999996 34433 4566666666665554
|
|
| >PRK12402 replication factor C small subunit 2; Reviewed | Back alignment and domain information |
|---|
Probab=98.19 E-value=6.9e-06 Score=85.80 Aligned_cols=54 Identities=26% Similarity=0.229 Sum_probs=40.0
Q ss_pred CCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhh
Q 006411 404 RDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVAS 469 (646)
Q Consensus 404 ~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar 469 (646)
++.+.+|++|+|.+.+++.|...+..+ . ...+||||||+.++...++.+...+.
T Consensus 8 ky~P~~~~~~~g~~~~~~~L~~~~~~~-----------~-~~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 8 KYRPALLEDILGQDEVVERLSRAVDSP-----------N-LPHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred hhCCCcHHHhcCCHHHHHHHHHHHhCC-----------C-CceEEEECCCCCCHHHHHHHHHHHhc
Confidence 456788999999999999998877531 1 13699999996666666766665553
|
|
| >PRK13342 recombination factor protein RarA; Reviewed | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.9e-05 Score=86.52 Aligned_cols=126 Identities=26% Similarity=0.382 Sum_probs=82.7
Q ss_pred CCCCcccccccChHHHHHH---HHHHHHhhccCccccccCCCCCccccccCCC------------------------Cch
Q 006411 404 RDPHVRWDDIAGLEHAKKC---VMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP------------------------IGE 456 (646)
Q Consensus 404 ~~p~VsfdDIgGle~~K~~---L~E~V~lPL~~pelf~~~~~PprGVLLyGPP------------------------vGe 456 (646)
+..+-+++|++|.+++... |.+++.. ..+..+|||||| ...
T Consensus 5 ~~RP~~l~d~vGq~~~v~~~~~L~~~i~~------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~ 72 (413)
T PRK13342 5 RMRPKTLDEVVGQEHLLGPGKPLRRMIEA------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS 72 (413)
T ss_pred hhCCCCHHHhcCcHHHhCcchHHHHHHHc------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc
Confidence 3456789999999998666 7777633 113479999999 222
Q ss_pred HHHHHHHHHHHhhh----cCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCC
Q 006411 457 GEKLVRALFGVASC----RQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGF 532 (646)
Q Consensus 457 sek~Vr~lF~~Ar~----~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl 532 (646)
+...++.+++.+.. ....||||||||.+.. ...+.|+..|+.
T Consensus 73 ~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~---------------------------------~~q~~LL~~le~- 118 (413)
T PRK13342 73 GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNK---------------------------------AQQDALLPHVED- 118 (413)
T ss_pred cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCH---------------------------------HHHHHHHHHhhc-
Confidence 33456666776642 2568999999998743 012345555543
Q ss_pred CCCCCcEEEEEecC-C-CCcCCHHHHhccccEEEeCCCCCCCcHHHHHHHHHHH
Q 006411 533 DSGSEQILLVGATN-R-PQELDEAARRRLTKRLYIPLPSSGYSGSDMKNLVKEA 584 (646)
Q Consensus 533 ~~~~~~VlVIaATN-r-Pd~LDpALlRRFDr~I~IplPd~GySGADL~~Lc~eA 584 (646)
..+++|++|+ . ...+++++++|+ ..+.++.|+. .|+..+++.+
T Consensus 119 ----~~iilI~att~n~~~~l~~aL~SR~-~~~~~~~ls~----e~i~~lL~~~ 163 (413)
T PRK13342 119 ----GTITLIGATTENPSFEVNPALLSRA-QVFELKPLSE----EDIEQLLKRA 163 (413)
T ss_pred ----CcEEEEEeCCCChhhhccHHHhccc-eeeEeCCCCH----HHHHHHHHHH
Confidence 3466676653 3 458999999999 6677877654 5555555544
|
|
| >PRK07133 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=98.16 E-value=2e-05 Score=92.16 Aligned_cols=141 Identities=21% Similarity=0.238 Sum_probs=84.3
Q ss_pred ccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhh-h----------
Q 006411 402 MDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVAS-C---------- 470 (646)
Q Consensus 402 ~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar-~---------- 470 (646)
..++.+-+|+||+|.+.+++.|+..+.. +..+..+||||||+. +.+.+..+|..+- +
T Consensus 9 ~~KyRP~~f~dIiGQe~~v~~L~~aI~~-----------~rl~HAYLF~GP~Gt-GKTt~AriLAk~LnC~~~~~~~~pC 76 (725)
T PRK07133 9 YRKYRPKTFDDIVGQDHIVQTLKNIIKS-----------NKISHAYLFSGPRGT-GKTSVAKIFANALNCSHKTDLLEPC 76 (725)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCC-cHHHHHHHHHHHhcccccCCCCCch
Confidence 3466789999999999999999998854 234578999999933 3333333333221 1
Q ss_pred --------cCCeeeeeh--------hhhHHhhhcccccccchhhhhhhhhhccccCC---CCCchhhHHHHHHHHHHHcC
Q 006411 471 --------RQPAVIFVD--------EIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKS---DGEHESSRRLKTQFLIEMEG 531 (646)
Q Consensus 471 --------~aPsIIFID--------EIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s---~~~~e~s~rilneLL~eLDG 531 (646)
..|.++.+| +|..|.. ..+...+.+.+.- +.-+..+....+.||..|+.
T Consensus 77 ~~C~~~~~~~~Dvieidaasn~~vd~IReLie------------~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEE 144 (725)
T PRK07133 77 QECIENVNNSLDIIEMDAASNNGVDEIRELIE------------NVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEE 144 (725)
T ss_pred hHHHHhhcCCCcEEEEeccccCCHHHHHHHHH------------HHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhc
Confidence 012233332 2333322 0000001111100 11122233467889988887
Q ss_pred CCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 532 FDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 532 l~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
.. +.+++|++|+.++.|.+.+++|+. ++.|..|+.
T Consensus 145 PP---~~tifILaTte~~KLl~TI~SRcq-~ieF~~L~~ 179 (725)
T PRK07133 145 PP---KHVIFILATTEVHKIPLTILSRVQ-RFNFRRISE 179 (725)
T ss_pred CC---CceEEEEEcCChhhhhHHHHhhce-eEEccCCCH
Confidence 53 467888888899999999999995 678877754
|
|
| >KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.1e-07 Score=104.50 Aligned_cols=225 Identities=13% Similarity=-0.030 Sum_probs=173.2
Q ss_pred cCCCCCCCchhhHhHHHHHHhhhhhccccccccccCCchhhhHHHHHHhhccccCCCcccccccchhcHHHHHHhHHHHH
Q 006411 7 CGEVPKTTSCWRKQVDDNLKRLHSLKFGADYFLDKRDFSSVRLLSLRLLGFLDSHTQSETDEILTRPIRREAVAKLDEAR 86 (646)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~r~~s~~fg~d~~~~~~~~~~~~~l~~~ll~f~~s~~~~~~~~~~~~~i~~~~~~~~~~a~ 86 (646)
.+..+....||++||.+++++++...|+.+...++-..+.+.++.||..+|++.+......-.|..|......-..+-|.
T Consensus 129 ~~~~~~~~~~i~~EI~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAs 208 (428)
T KOG0740|consen 129 KEVDETLIEGIRNEIGDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIAT 208 (428)
T ss_pred ccccchhhHHHHHHHhccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHh
Confidence 34455667899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCchhHHHHHHhccCCCcccccCCccceeehhhhHHHHHHHhhhchhhhhhhcCccccccccccccchhhhHhhhhh
Q 006411 87 RALVPDSDRRAFEQAGRAPGCAFSLKGGIDVEKIKQSKYFRANLQQYNEQATSELGGRLDRQGKLFSNQSKVMTQEKLAS 166 (646)
Q Consensus 87 ~~~~~~~d~~~~~~a~~~~~~~f~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~q~~l~s 166 (646)
++.++..+..|+.++.+.+|-. .++--++.+|.+++|+-... .++.-.-|..+ .++....+.+.+||..++.
T Consensus 209 E~~atff~iSassLtsK~~Ge~--eK~vralf~vAr~~qPsvif---idEidslls~R---s~~e~e~srr~ktefLiq~ 280 (428)
T KOG0740|consen 209 ESGATFFNISASSLTSKYVGES--EKLVRALFKVARSLQPSVIF---IDEIDSLLSKR---SDNEHESSRRLKTEFLLQF 280 (428)
T ss_pred hhcceEeeccHHHhhhhccChH--HHHHHHHHHHHHhcCCeEEE---echhHHHHhhc---CCcccccchhhhhHHHhhh
Confidence 9999999999999999999976 66666777777777776655 66667777776 3444456679999999999
Q ss_pred hhcCCccccCCCCCCccc---ccCCCCCccceeeecCCcccCCCCCCCcccccchhHhhcCCCCCCCCccCcccCCCCCc
Q 006411 167 LYGNNIMKTNTGSFRSML---NSKSNGSEDCVIVEKSSLFSNLPKGHNVSKFVKVEEEERGYTNSSGMKRAHVEISSPTN 243 (646)
Q Consensus 167 l~~~~~~k~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kr~~~~~~~p~~ 243 (646)
+|.+.... ++-++ ++.+-..+||+.. +-+.. .+ .+|.|.+.+.-.+
T Consensus 281 ~~~~s~~~-----drvlvigaTN~P~e~Dea~~R-rf~kr------------------------~y-iplPd~etr~~~~ 329 (428)
T KOG0740|consen 281 DGKNSAPD-----DRVLVIGATNRPWELDEAARR-RFVKR------------------------LY-IPLPDYETRSLLW 329 (428)
T ss_pred ccccCCCC-----CeEEEEecCCCchHHHHHHHH-Hhhce------------------------ee-ecCCCHHHHHHHH
Confidence 99887322 23333 3444566777766 43333 33 4555555444443
Q ss_pred CCCCCCCCCcCCCCCCCCCchhhhHHHHhHHHHHhcC
Q 006411 244 WISKSPSATENVNNDVSANGFVTAKAKLERDVRQRRG 280 (646)
Q Consensus 244 ~~~~sp~~~~~~~~~~~~~~F~tak~ql~~d~~~K~~ 280 (646)
. ....++ ++++.++.-.+.++.-+.++
T Consensus 330 ~--------~ll~~~--~~~l~~~d~~~l~~~Tegys 356 (428)
T KOG0740|consen 330 K--------QLLKEQ--PNGLSDLDISLLAKVTEGYS 356 (428)
T ss_pred H--------HHHHhC--CCCccHHHHHHHHHHhcCcc
Confidence 3 333233 67788888888887777654
|
|
| >COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.15 E-value=1e-05 Score=88.40 Aligned_cols=126 Identities=30% Similarity=0.450 Sum_probs=86.7
Q ss_pred CCcccccccChHHHH---HHHHHHHHhhccCccccccCCCCCccccccCCC------------------------CchHH
Q 006411 406 PHVRWDDIAGLEHAK---KCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP------------------------IGEGE 458 (646)
Q Consensus 406 p~VsfdDIgGle~~K---~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPP------------------------vGese 458 (646)
.+-+++||+|.+++. .-|+++|.. ......+||||| +..+.
T Consensus 19 RP~~lde~vGQ~HLlg~~~~lrr~v~~------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gv 86 (436)
T COG2256 19 RPKSLDEVVGQEHLLGEGKPLRRAVEA------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGV 86 (436)
T ss_pred CCCCHHHhcChHhhhCCCchHHHHHhc------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccccH
Confidence 367899999999876 344555433 123578999999 55567
Q ss_pred HHHHHHHHHhhhcC----CeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCC
Q 006411 459 KLVRALFGVASCRQ----PAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDS 534 (646)
Q Consensus 459 k~Vr~lF~~Ar~~a----PsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~ 534 (646)
+-||.+|+.|+... ..|||||||..+-. .. ...||-.|+
T Consensus 87 kdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK------------------------~Q---------QD~lLp~vE---- 129 (436)
T COG2256 87 KDLREIIEEARKNRLLGRRTILFLDEIHRFNK------------------------AQ---------QDALLPHVE---- 129 (436)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEehhhhcCh------------------------hh---------hhhhhhhhc----
Confidence 78999999996554 58999999998843 10 112444442
Q ss_pred CCCcEEEEEec-CCC-CcCCHHHHhccccEEEeCCCCCCCcHHHHHHHHHHHhh
Q 006411 535 GSEQILLVGAT-NRP-QELDEAARRRLTKRLYIPLPSSGYSGSDMKNLVKEASM 586 (646)
Q Consensus 535 ~~~~VlVIaAT-NrP-d~LDpALlRRFDr~I~IplPd~GySGADL~~Lc~eAa~ 586 (646)
++.|++|||| -.| ..|.+||++|.---..=|+ +..||+.+++.|+.
T Consensus 130 -~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L-----~~~di~~~l~ra~~ 177 (436)
T COG2256 130 -NGTIILIGATTENPSFELNPALLSRARVFELKPL-----SSEDIKKLLKRALL 177 (436)
T ss_pred -CCeEEEEeccCCCCCeeecHHHhhhhheeeeecC-----CHHHHHHHHHHHHh
Confidence 3456667665 344 4799999998754444444 67888888888664
|
|
| >PRK14956 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.2e-05 Score=90.20 Aligned_cols=119 Identities=17% Similarity=0.207 Sum_probs=79.5
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhh------------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASC------------ 470 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~------------ 470 (646)
.+..+-+|+||+|.+.+...|+.++.. +..+..+||||||+.++....+.+-+...+
T Consensus 10 ~KyRP~~f~dvVGQe~iv~~L~~~i~~-----------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C 78 (484)
T PRK14956 10 RKYRPQFFRDVIHQDLAIGALQNALKS-----------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNEC 78 (484)
T ss_pred HHhCCCCHHHHhChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCC
Confidence 456678999999999999999888754 223467999999933333333333222211
Q ss_pred -----------------------------------------cCCeeeeehhhhHHhhhcccccccchhhhhhhhhhcccc
Q 006411 471 -----------------------------------------RQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQR 509 (646)
Q Consensus 471 -----------------------------------------~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R 509 (646)
....|+||||+|.|
T Consensus 79 ~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~L------------------------- 133 (484)
T PRK14956 79 TSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHML------------------------- 133 (484)
T ss_pred cHHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhc-------------------------
Confidence 11235555555544
Q ss_pred CCCCCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCC
Q 006411 510 KSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPS 569 (646)
Q Consensus 510 ~s~~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd 569 (646)
+....+.||..|+.. ...|++|++|+.++.|.+++++|+.+ +.|..++
T Consensus 134 --------s~~A~NALLKtLEEP---p~~viFILaTte~~kI~~TI~SRCq~-~~f~~ls 181 (484)
T PRK14956 134 --------TDQSFNALLKTLEEP---PAHIVFILATTEFHKIPETILSRCQD-FIFKKVP 181 (484)
T ss_pred --------CHHHHHHHHHHhhcC---CCceEEEeecCChhhccHHHHhhhhe-eeecCCC
Confidence 234578888888653 35789999999999999999999855 4555543
|
|
| >PRK05563 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=98.13 E-value=3.2e-05 Score=88.39 Aligned_cols=144 Identities=21% Similarity=0.268 Sum_probs=84.1
Q ss_pred ccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhh-hc---------
Q 006411 402 MDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVAS-CR--------- 471 (646)
Q Consensus 402 ~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar-~~--------- 471 (646)
..+..+.+|+||+|.+.+++.|+..+.. +..+..+|||||| |-+...+..+|..+- +.
T Consensus 7 ~~k~rP~~f~~viGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~-GtGKTt~Ak~lAkal~c~~~~~~~pC~ 74 (559)
T PRK05563 7 YRKWRPQTFEDVVGQEHITKTLKNAIKQ-----------GKISHAYLFSGPR-GTGKTSAAKIFAKAVNCLNPPDGEPCN 74 (559)
T ss_pred HHHhCCCcHHhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCC-CCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 3456788999999999999999988764 2345789999999 333333444443332 11
Q ss_pred ------------CCeeeeehh--------hhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcC
Q 006411 472 ------------QPAVIFVDE--------IDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEG 531 (646)
Q Consensus 472 ------------aPsIIFIDE--------IDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDG 531 (646)
.|.++.||- |..|..+ +...+..+..+... -+.-+.-+....+.||..|+.
T Consensus 75 ~C~~C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~------v~~~p~~~~~kViI---IDE~~~Lt~~a~naLLKtLEe 145 (559)
T PRK05563 75 ECEICKAITNGSLMDVIEIDAASNNGVDEIRDIRDK------VKYAPSEAKYKVYI---IDEVHMLSTGAFNALLKTLEE 145 (559)
T ss_pred ccHHHHHHhcCCCCCeEEeeccccCCHHHHHHHHHH------HhhCcccCCeEEEE---EECcccCCHHHHHHHHHHhcC
Confidence 234544432 2222220 00000000000000 011122234467889988876
Q ss_pred CCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 532 FDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 532 l~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
.. ..+++|.+|+.|+.|.+.+++|+. ++.|+.|+.
T Consensus 146 pp---~~~ifIlatt~~~ki~~tI~SRc~-~~~f~~~~~ 180 (559)
T PRK05563 146 PP---AHVIFILATTEPHKIPATILSRCQ-RFDFKRISV 180 (559)
T ss_pred CC---CCeEEEEEeCChhhCcHHHHhHhe-EEecCCCCH
Confidence 53 367777778889999999999885 467877754
|
|
| >PRK12323 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=9.2e-06 Score=93.78 Aligned_cols=141 Identities=19% Similarity=0.187 Sum_probs=82.5
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhc----------C
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCR----------Q 472 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~----------a 472 (646)
.++.+-+|+||+|.+++++.|+.++.. ++.+..+||+||++-++....+.+-+...+. .
T Consensus 8 rKYRPqtFddVIGQe~vv~~L~~al~~-----------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~ 76 (700)
T PRK12323 8 RKWRPRDFTTLVGQEHVVRALTHALEQ-----------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQ 76 (700)
T ss_pred HHhCCCcHHHHcCcHHHHHHHHHHHHh-----------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCC
Confidence 456788999999999999999988864 2335789999999433333333332222221 1
Q ss_pred C----------------eeeeeh--------hhhHHhhhcccccccchhhhhhhhhhccccC---CCCCchhhHHHHHHH
Q 006411 473 P----------------AVIFVD--------EIDSLLSQMLPYMHVHHIKLFCLKRFYFQRK---SDGEHESSRRLKTQF 525 (646)
Q Consensus 473 P----------------sIIFID--------EIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~---s~~~~e~s~rilneL 525 (646)
| .+|.|| +|-.|... +... ...++.+ -+.-+..+....|.|
T Consensus 77 PCG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~-----------~~~~-P~~gr~KViIIDEah~Ls~~AaNAL 144 (700)
T PRK12323 77 PCGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDK-----------AVYA-PTAGRFKVYMIDEVHMLTNHAFNAM 144 (700)
T ss_pred CCcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHH-----------HHhc-hhcCCceEEEEEChHhcCHHHHHHH
Confidence 2 233322 22222110 0000 0000000 011122234567889
Q ss_pred HHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 526 LIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 526 L~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
|..|+.- ..++++|++||.++.|.+.|++|+ .++.|..++.
T Consensus 145 LKTLEEP---P~~v~FILaTtep~kLlpTIrSRC-q~f~f~~ls~ 185 (700)
T PRK12323 145 LKTLEEP---PEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPP 185 (700)
T ss_pred HHhhccC---CCCceEEEEeCChHhhhhHHHHHH-HhcccCCCCh
Confidence 9888764 347899999999999999999998 5567777754
|
|
| >KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.10 E-value=3.3e-05 Score=86.73 Aligned_cols=106 Identities=25% Similarity=0.362 Sum_probs=83.7
Q ss_pred CCCccccccCCC------------------------------CchHHH--HHHHHHHHhhhcCCeeeeehhhhHHhhhcc
Q 006411 442 SPGKGLLLFGPP------------------------------IGEGEK--LVRALFGVASCRQPAVIFVDEIDSLLSQML 489 (646)
Q Consensus 442 ~PprGVLLyGPP------------------------------vGesek--~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~ 489 (646)
.+-..|||+||| ..|++| .|+.+|+.|++..-+||++|+|+.|..-
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~-- 613 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDY-- 613 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhcc--
Confidence 456899999999 444544 6899999999999999999999999851
Q ss_pred cccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHH-HHhccccEEEeCCC
Q 006411 490 PYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEA-ARRRLTKRLYIPLP 568 (646)
Q Consensus 490 ~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpA-LlRRFDr~I~IplP 568 (646)
..-....+..++..|+..+.....+..+.+|++||.+-.-|-.. ++..|+..|.||.-
T Consensus 614 ---------------------vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl 672 (744)
T KOG0741|consen 614 ---------------------VPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNL 672 (744)
T ss_pred ---------------------cccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCcc
Confidence 12233456789999999999988877789999999987666553 33389999998876
Q ss_pred CC
Q 006411 569 SS 570 (646)
Q Consensus 569 d~ 570 (646)
+.
T Consensus 673 ~~ 674 (744)
T KOG0741|consen 673 TT 674 (744)
T ss_pred Cc
Confidence 53
|
|
| >TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.4e-05 Score=88.23 Aligned_cols=92 Identities=24% Similarity=0.414 Sum_probs=65.4
Q ss_pred eeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCC-------CCCcEEEEEecC
Q 006411 474 AVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDS-------GSEQILLVGATN 546 (646)
Q Consensus 474 sIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~-------~~~~VlVIaATN 546 (646)
-||||||||.|+. +..+.+...+...+-..||..|+|-.- .+++|++|++-.
T Consensus 249 GIVfiDEiDKIa~---------------------~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GA 307 (441)
T TIGR00390 249 GIIFIDEIDKIAK---------------------KGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGA 307 (441)
T ss_pred CEEEEEchhhhcc---------------------cCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCC
Confidence 4999999999987 111112122223477789999888431 246799998864
Q ss_pred ----CCCcCCHHHHhccccEEEeCCCCC-----------------------------CCcHHHHHHHHHHHhh
Q 006411 547 ----RPQELDEAARRRLTKRLYIPLPSS-----------------------------GYSGSDMKNLVKEASM 586 (646)
Q Consensus 547 ----rPd~LDpALlRRFDr~I~IplPd~-----------------------------GySGADL~~Lc~eAa~ 586 (646)
.|.+|=|.|.-||..++.+..++. -|+-.-|+.+++.|..
T Consensus 308 F~~~kp~DlIPEl~GR~Pi~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~ 380 (441)
T TIGR00390 308 FQLAKPSDLIPELQGRFPIRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYN 380 (441)
T ss_pred cCCCChhhccHHHhCccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHH
Confidence 577788888889999999998875 4677777777777663
|
This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment. |
| >PRK07003 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.3e-05 Score=91.76 Aligned_cols=141 Identities=16% Similarity=0.162 Sum_probs=81.8
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhc-----CC----
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCR-----QP---- 473 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~-----aP---- 473 (646)
.++.+-+|+||+|.+.+++.|+.++.. +..+..+||||||+.++....+.+-+...+. .|
T Consensus 8 rKYRPqtFdEVIGQe~Vv~~L~~aL~~-----------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C 76 (830)
T PRK07003 8 RKWRPKDFASLVGQEHVVRALTHALDG-----------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVC 76 (830)
T ss_pred HHhCCCcHHHHcCcHHHHHHHHHHHhc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCccc
Confidence 456788999999999999999988743 2345789999999444433333322222110 12
Q ss_pred ------------eeeeehhh--------hHHhhhcccccccchhhhhhhhhhccccC---CCCCchhhHHHHHHHHHHHc
Q 006411 474 ------------AVIFVDEI--------DSLLSQMLPYMHVHHIKLFCLKRFYFQRK---SDGEHESSRRLKTQFLIEME 530 (646)
Q Consensus 474 ------------sIIFIDEI--------DsL~~k~~~~~~~~~~~~~~~kr~~~~R~---s~~~~e~s~rilneLL~eLD 530 (646)
.++.||.. -.|... + .......+.+ -+.-|..+....|.||..|+
T Consensus 77 ~sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~-----------a-~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLE 144 (830)
T PRK07003 77 RACREIDEGRFVDYVEMDAASNRGVDEMAALLER-----------A-VYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLE 144 (830)
T ss_pred HHHHHHhcCCCceEEEecccccccHHHHHHHHHH-----------H-HhccccCCceEEEEeChhhCCHHHHHHHHHHHH
Confidence 23443321 111110 0 0000000000 01112223345788998887
Q ss_pred CCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 531 GFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 531 Gl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
... ..+++|++||.++.|.+.|++|+ .++.|..++.
T Consensus 145 EPP---~~v~FILaTtd~~KIp~TIrSRC-q~f~Fk~Ls~ 180 (830)
T PRK07003 145 EPP---PHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPA 180 (830)
T ss_pred hcC---CCeEEEEEECChhhccchhhhhe-EEEecCCcCH
Confidence 753 37899999999999999999998 4556666543
|
|
| >PRK08691 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=98.09 E-value=2e-05 Score=91.56 Aligned_cols=144 Identities=17% Similarity=0.178 Sum_probs=80.2
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhc-----------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCR----------- 471 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~----------- 471 (646)
.++.+-+|+||+|.+.+++.|+..+.. ++.+.++||||||+.++....+.+-...-+.
T Consensus 8 rKYRP~tFddIIGQe~vv~~L~~ai~~-----------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C 76 (709)
T PRK08691 8 RKWRPKTFADLVGQEHVVKALQNALDE-----------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVC 76 (709)
T ss_pred HHhCCCCHHHHcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCccc
Confidence 456788999999999999999998764 2346889999999333333332222211110
Q ss_pred ----------CCeeeeeh--------hhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCC
Q 006411 472 ----------QPAVIFVD--------EIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFD 533 (646)
Q Consensus 472 ----------aPsIIFID--------EIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~ 533 (646)
-+.++.|| +|..++.. +...+.+...+...- +.-+..+....+.||..|+...
T Consensus 77 ~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~------a~~~P~~gk~KVIII---DEad~Ls~~A~NALLKtLEEPp 147 (709)
T PRK08691 77 QSCTQIDAGRYVDLLEIDAASNTGIDNIREVLEN------AQYAPTAGKYKVYII---DEVHMLSKSAFNAMLKTLEEPP 147 (709)
T ss_pred HHHHHHhccCccceEEEeccccCCHHHHHHHHHH------HHhhhhhCCcEEEEE---ECccccCHHHHHHHHHHHHhCC
Confidence 11222222 22222220 000000000000000 0111222345788999998753
Q ss_pred CCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 534 SGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 534 ~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
+.+.+|++|+.+..|.+.++.|+ .++.|+.++.
T Consensus 148 ---~~v~fILaTtd~~kL~~TIrSRC-~~f~f~~Ls~ 180 (709)
T PRK08691 148 ---EHVKFILATTDPHKVPVTVLSRC-LQFVLRNMTA 180 (709)
T ss_pred ---CCcEEEEEeCCccccchHHHHHH-hhhhcCCCCH
Confidence 36788888999999999999887 3345556543
|
|
| >PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.7e-05 Score=87.75 Aligned_cols=76 Identities=22% Similarity=0.427 Sum_probs=54.3
Q ss_pred eeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCC-------CCCcEEEEEec-
Q 006411 474 AVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDS-------GSEQILLVGAT- 545 (646)
Q Consensus 474 sIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~-------~~~~VlVIaAT- 545 (646)
-||||||||.|+. +..+.+...+...+-..||..|+|-.- .+++|++|++-
T Consensus 251 GIVfiDEiDKIa~---------------------~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GA 309 (443)
T PRK05201 251 GIVFIDEIDKIAA---------------------RGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGA 309 (443)
T ss_pred CEEEEEcchhhcc---------------------cCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCC
Confidence 3999999999987 111111122233477789999988421 24679999874
Q ss_pred ---CCCCcCCHHHHhccccEEEeCCCCC
Q 006411 546 ---NRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 546 ---NrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
..|.+|=|.|.-||..++.+..++.
T Consensus 310 F~~~kp~DlIPEl~GR~Pi~v~L~~L~~ 337 (443)
T PRK05201 310 FHVSKPSDLIPELQGRFPIRVELDALTE 337 (443)
T ss_pred cCCCChhhccHHHhCccceEEECCCCCH
Confidence 4578888999999999999988764
|
|
| >PRK06645 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=98.05 E-value=6.2e-05 Score=85.16 Aligned_cols=144 Identities=18% Similarity=0.207 Sum_probs=83.2
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhc-----------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCR----------- 471 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~----------- 471 (646)
.+..+-+|+|++|.+.+++.|+..+.. +..+.++||+|||+.++....+.+....-+.
T Consensus 13 ~kyRP~~f~dliGq~~vv~~L~~ai~~-----------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~ 81 (507)
T PRK06645 13 RKYRPSNFAELQGQEVLVKVLSYTILN-----------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKT 81 (507)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCC
Confidence 456788999999999999998886644 2345789999999444444444443332221
Q ss_pred --------------CCeeeee--------hhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHH
Q 006411 472 --------------QPAVIFV--------DEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEM 529 (646)
Q Consensus 472 --------------aPsIIFI--------DEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eL 529 (646)
.|.++.| |+|..+... +...+++...+... -+.-+.-+....+.||..|
T Consensus 82 C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~------a~~~P~~~~~KVvI---IDEa~~Ls~~a~naLLk~L 152 (507)
T PRK06645 82 CEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIES------AEYKPLQGKHKIFI---IDEVHMLSKGAFNALLKTL 152 (507)
T ss_pred CCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHH------HHhccccCCcEEEE---EEChhhcCHHHHHHHHHHH
Confidence 1233333 223333220 00000000000000 0111222234567888888
Q ss_pred cCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 530 EGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 530 DGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
+.. ...+++|++|+.++.|.+++++|+ .+++|..++.
T Consensus 153 Eep---p~~~vfI~aTte~~kI~~tI~SRc-~~~ef~~ls~ 189 (507)
T PRK06645 153 EEP---PPHIIFIFATTEVQKIPATIISRC-QRYDLRRLSF 189 (507)
T ss_pred hhc---CCCEEEEEEeCChHHhhHHHHhcc-eEEEccCCCH
Confidence 753 346788888899999999999988 5678877754
|
|
| >PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=7.6e-05 Score=82.46 Aligned_cols=114 Identities=25% Similarity=0.308 Sum_probs=68.8
Q ss_pred ccChHHHHHHHHHHHHhhccCccccc----cCCCCCccccccCCCC--------------------------------ch
Q 006411 413 IAGLEHAKKCVMEMVIWPLLRPDIFK----GCRSPGKGLLLFGPPI--------------------------------GE 456 (646)
Q Consensus 413 IgGle~~K~~L~E~V~lPL~~pelf~----~~~~PprGVLLyGPPv--------------------------------Ge 456 (646)
|+|.+.+|+.|...|..++++-.... ....+..+|||+|||+ |+
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~ 152 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGE 152 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccc
Confidence 89999999999888866554332111 1123457899999991 11
Q ss_pred -HHHHHHHHHHHh----hhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCC--CCCchhhHHHHHHHHHHH
Q 006411 457 -GEKLVRALFGVA----SCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKS--DGEHESSRRLKTQFLIEM 529 (646)
Q Consensus 457 -sek~Vr~lF~~A----r~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s--~~~~e~s~rilneLL~eL 529 (646)
.+..+..++..+ ....++||||||||.+.. ++.+ ...+.....+.+.||..|
T Consensus 153 d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~---------------------~~~~~~~~~d~s~~~vQ~~LL~~L 211 (412)
T PRK05342 153 DVENILLKLLQAADYDVEKAQRGIVYIDEIDKIAR---------------------KSENPSITRDVSGEGVQQALLKIL 211 (412)
T ss_pred hHHHHHHHHHHhccccHHHcCCcEEEEechhhhcc---------------------ccCCCCcCCCcccHHHHHHHHHHH
Confidence 133344444322 234789999999999976 2111 111112235778899999
Q ss_pred cCCC----------CCCCcEEEEEecCC
Q 006411 530 EGFD----------SGSEQILLVGATNR 547 (646)
Q Consensus 530 DGl~----------~~~~~VlVIaATNr 547 (646)
||-. ......++|+|+|-
T Consensus 212 eg~~~~v~~~gg~~~~~~~~~~i~t~ni 239 (412)
T PRK05342 212 EGTVASVPPQGGRKHPQQEFIQVDTTNI 239 (412)
T ss_pred hcCeEEeCCCCCcCcCCCCeEEeccCCc
Confidence 8642 01124567777776
|
|
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.04 E-value=5.8e-05 Score=83.62 Aligned_cols=125 Identities=18% Similarity=0.319 Sum_probs=74.7
Q ss_pred CCCCcccccc-cChH--HHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhc---------
Q 006411 404 RDPHVRWDDI-AGLE--HAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCR--------- 471 (646)
Q Consensus 404 ~~p~VsfdDI-gGle--~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~--------- 471 (646)
..|..+|++. .|-. .+...++++...| +.....++|||||+.++...++.+...+...
T Consensus 115 l~~~~tfd~fv~g~~n~~a~~~~~~~~~~~----------~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi 184 (450)
T PRK00149 115 LNPKYTFDNFVVGKSNRLAHAAALAVAENP----------GKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYV 184 (450)
T ss_pred CCCCCcccccccCCCcHHHHHHHHHHHhCc----------CccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 4577899994 4532 2555555554432 1223569999999555555555554444322
Q ss_pred --------------------------CCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHH
Q 006411 472 --------------------------QPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQF 525 (646)
Q Consensus 472 --------------------------aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneL 525 (646)
.+.+|+|||||.+.. ++ ....+|
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~---------------------~~----------~~~~~l 233 (450)
T PRK00149 185 TSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAG---------------------KE----------RTQEEF 233 (450)
T ss_pred EHHHHHHHHHHHHHcCcHHHHHHHHhcCCEEEEehhhhhcC---------------------CH----------HHHHHH
Confidence 355778888887754 11 122344
Q ss_pred HHHHcCCCCCCCcEEEEEecCCCCc---CCHHHHhccc--cEEEeCCCCC
Q 006411 526 LIEMEGFDSGSEQILLVGATNRPQE---LDEAARRRLT--KRLYIPLPSS 570 (646)
Q Consensus 526 L~eLDGl~~~~~~VlVIaATNrPd~---LDpALlRRFD--r~I~IplPd~ 570 (646)
+..++.+.. ....+||+++..|.. ++++++.||. ..+.|..|+.
T Consensus 234 ~~~~n~l~~-~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~ 282 (450)
T PRK00149 234 FHTFNALHE-AGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDL 282 (450)
T ss_pred HHHHHHHHH-CCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCH
Confidence 444444433 223466666666655 7789888996 4788999986
|
|
| >PLN03025 replication factor C subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=4e-05 Score=81.08 Aligned_cols=119 Identities=21% Similarity=0.200 Sum_probs=78.0
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHh--------------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVA-------------- 468 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~A-------------- 468 (646)
+++.+-+|+||.|.+++++.|+.++.. +.. ..+||||||+.++...++.+-..+
T Consensus 5 ~kyrP~~l~~~~g~~~~~~~L~~~~~~-----------~~~-~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~ 72 (319)
T PLN03025 5 EKYRPTKLDDIVGNEDAVSRLQVIARD-----------GNM-PNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNA 72 (319)
T ss_pred hhcCCCCHHHhcCcHHHHHHHHHHHhc-----------CCC-ceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecc
Confidence 456788999999999999999876543 111 358999999433333333222111
Q ss_pred -----------------hh------cCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHH
Q 006411 469 -----------------SC------RQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQF 525 (646)
Q Consensus 469 -----------------r~------~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneL 525 (646)
.. ..+.||+|||+|.+.. ...+.|
T Consensus 73 sd~~~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~---------------------------------~aq~aL 119 (319)
T PLN03025 73 SDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTS---------------------------------GAQQAL 119 (319)
T ss_pred cccccHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCH---------------------------------HHHHHH
Confidence 00 1256888888887743 113445
Q ss_pred HHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 526 LIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 526 L~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
+..|+.... .+.+|.+||.+..+.+++++|+. .+.|+.|+.
T Consensus 120 ~~~lE~~~~---~t~~il~~n~~~~i~~~L~SRc~-~i~f~~l~~ 160 (319)
T PLN03025 120 RRTMEIYSN---TTRFALACNTSSKIIEPIQSRCA-IVRFSRLSD 160 (319)
T ss_pred HHHHhcccC---CceEEEEeCCccccchhHHHhhh-cccCCCCCH
Confidence 666654432 35567788899999999999984 678888864
|
|
| >PRK14964 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=7.1e-05 Score=84.34 Aligned_cols=143 Identities=15% Similarity=0.194 Sum_probs=84.2
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhh-------------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVAS------------- 469 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar------------- 469 (646)
.++.+.+|+||+|.+.+++.|+..+.. +..+..+||+|||+. +.+.+-.+|..+-
T Consensus 5 ~KyRP~~f~dliGQe~vv~~L~~a~~~-----------~ri~ha~Lf~Gp~G~-GKTT~ArilAk~LnC~~~~~~~pCg~ 72 (491)
T PRK14964 5 LKYRPSSFKDLVGQDVLVRILRNAFTL-----------NKIPQSILLVGASGV-GKTTCARIISLCLNCSNGPTSDPCGT 72 (491)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCc-cHHHHHHHHHHHHcCcCCCCCCCccc
Confidence 356678999999999999999877644 344689999999933 3333333443321
Q ss_pred ---------hcCCeeeeehh--------hhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCC
Q 006411 470 ---------CRQPAVIFVDE--------IDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGF 532 (646)
Q Consensus 470 ---------~~aPsIIFIDE--------IDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl 532 (646)
...|.++.||- |-.+.. .+...+++...+..- -+.-+.-+....+.||..|+..
T Consensus 73 C~~C~~i~~~~~~Dv~eidaas~~~vddIR~Iie------~~~~~P~~~~~KVvI---IDEah~Ls~~A~NaLLK~LEeP 143 (491)
T PRK14964 73 CHNCISIKNSNHPDVIEIDAASNTSVDDIKVILE------NSCYLPISSKFKVYI---IDEVHMLSNSAFNALLKTLEEP 143 (491)
T ss_pred cHHHHHHhccCCCCEEEEecccCCCHHHHHHHHH------HHHhccccCCceEEE---EeChHhCCHHHHHHHHHHHhCC
Confidence 12345565542 222221 000000100000000 0111222344678899888875
Q ss_pred CCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 533 DSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 533 ~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
. +.+++|++|+.++.|.+.+++|+ ..+.|..++.
T Consensus 144 p---~~v~fIlatte~~Kl~~tI~SRc-~~~~f~~l~~ 177 (491)
T PRK14964 144 A---PHVKFILATTEVKKIPVTIISRC-QRFDLQKIPT 177 (491)
T ss_pred C---CCeEEEEEeCChHHHHHHHHHhh-eeeecccccH
Confidence 4 36888888889999999999988 4467776654
|
|
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00014 Score=79.42 Aligned_cols=125 Identities=18% Similarity=0.311 Sum_probs=73.5
Q ss_pred CCCCccccc-ccChHH--HHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhc---------
Q 006411 404 RDPHVRWDD-IAGLEH--AKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCR--------- 471 (646)
Q Consensus 404 ~~p~VsfdD-IgGle~--~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~--------- 471 (646)
-.+..+|++ ++|-.. +...++++...| +.....++|||||+.++...++++...+...
T Consensus 103 l~~~~tfd~fi~g~~n~~a~~~~~~~~~~~----------~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi 172 (405)
T TIGR00362 103 LNPKYTFDNFVVGKSNRLAHAAALAVAENP----------GKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYV 172 (405)
T ss_pred CCCCCcccccccCCcHHHHHHHHHHHHhCc----------CccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 356789999 556333 344444444332 1224579999999666666666665544322
Q ss_pred --------------------------CCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHH
Q 006411 472 --------------------------QPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQF 525 (646)
Q Consensus 472 --------------------------aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneL 525 (646)
.+.+|+|||||.+.. ++ ....+|
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~---------------------~~----------~~~~~l 221 (405)
T TIGR00362 173 SSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAG---------------------KE----------RTQEEF 221 (405)
T ss_pred EHHHHHHHHHHHHHcCCHHHHHHHHHhCCEEEEehhhhhcC---------------------CH----------HHHHHH
Confidence 234677777776643 11 112344
Q ss_pred HHHHcCCCCCCCcEEEEEecCCCCc---CCHHHHhcccc--EEEeCCCCC
Q 006411 526 LIEMEGFDSGSEQILLVGATNRPQE---LDEAARRRLTK--RLYIPLPSS 570 (646)
Q Consensus 526 L~eLDGl~~~~~~VlVIaATNrPd~---LDpALlRRFDr--~I~IplPd~ 570 (646)
+..++.+.. .+..+||.++..|.. +++.+++||.. .+.|+.||.
T Consensus 222 ~~~~n~~~~-~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~ 270 (405)
T TIGR00362 222 FHTFNALHE-NGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDL 270 (405)
T ss_pred HHHHHHHHH-CCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCH
Confidence 444444433 224466666666665 55788889974 789999985
|
DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). |
| >PRK14960 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=7.8e-05 Score=86.44 Aligned_cols=145 Identities=17% Similarity=0.131 Sum_probs=79.8
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhh------------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASC------------ 470 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~------------ 470 (646)
.+..+-+|+||+|.+.+++.|..++.. +..+..+||||||+.++....+.+-+..-+
T Consensus 7 rKyRPktFddVIGQe~vv~~L~~aI~~-----------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C 75 (702)
T PRK14960 7 RKYRPRNFNELVGQNHVSRALSSALER-----------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVC 75 (702)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccC
Confidence 456678999999999999999888853 234578999999933333333322222111
Q ss_pred ---------cCCeeeeehhhhHHhhhcccccccchhhhhhhhh----hccccC---CCCCchhhHHHHHHHHHHHcCCCC
Q 006411 471 ---------RQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKR----FYFQRK---SDGEHESSRRLKTQFLIEMEGFDS 534 (646)
Q Consensus 471 ---------~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr----~~~~R~---s~~~~e~s~rilneLL~eLDGl~~ 534 (646)
..|.++.||-.+... ....+.....- ..++++ -+.-|.-+....+.||..|+...
T Consensus 76 ~sC~~I~~g~hpDviEIDAAs~~~--------VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP- 146 (702)
T PRK14960 76 ATCKAVNEGRFIDLIEIDAASRTK--------VEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPP- 146 (702)
T ss_pred HHHHHHhcCCCCceEEecccccCC--------HHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCC-
Confidence 012333332211000 00000000000 000000 01111222345678888888643
Q ss_pred CCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 535 GSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 535 ~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
..+.+|++|+.+..+.+.+++|+. ++.|..++.
T Consensus 147 --~~v~FILaTtd~~kIp~TIlSRCq-~feFkpLs~ 179 (702)
T PRK14960 147 --EHVKFLFATTDPQKLPITVISRCL-QFTLRPLAV 179 (702)
T ss_pred --CCcEEEEEECChHhhhHHHHHhhh-eeeccCCCH
Confidence 467888888999999999999884 567776654
|
|
| >PRK14969 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=4.8e-05 Score=86.37 Aligned_cols=139 Identities=18% Similarity=0.189 Sum_probs=81.2
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhh-hc-----CC---
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVAS-CR-----QP--- 473 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar-~~-----aP--- 473 (646)
.+..+-+|+||+|.+.+++.|..++.. +..+..+||||||+.++.... .+|..+- +. .|
T Consensus 8 ~k~rP~~f~divGq~~v~~~L~~~i~~-----------~~~~ha~Lf~Gp~G~GKTt~A-~~lAk~l~c~~~~~~~pcg~ 75 (527)
T PRK14969 8 RKWRPKSFSELVGQEHVVRALTNALEQ-----------QRLHHAYLFTGTRGVGKTTLA-RILAKSLNCETGVTATPCGV 75 (527)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCEEEEEECCCCCCHHHHH-HHHHHHhcCCCCCCCCCCCC
Confidence 355678999999999999999888754 234578999999944333333 3333222 10 12
Q ss_pred -------------eeeeehh--------hhHHhhhcccccccchhhhhhhhh-hccccC---CCCCchhhHHHHHHHHHH
Q 006411 474 -------------AVIFVDE--------IDSLLSQMLPYMHVHHIKLFCLKR-FYFQRK---SDGEHESSRRLKTQFLIE 528 (646)
Q Consensus 474 -------------sIIFIDE--------IDsL~~k~~~~~~~~~~~~~~~kr-~~~~R~---s~~~~e~s~rilneLL~e 528 (646)
.++.+|- |-.|.. .+... ..+.++ -+.-+..+....|.||..
T Consensus 76 C~~C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~-------------~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~ 142 (527)
T PRK14969 76 CSACLEIDSGRFVDLIEVDAASNTQVDAMRELLD-------------NAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKT 142 (527)
T ss_pred CHHHHHHhcCCCCceeEeeccccCCHHHHHHHHH-------------HHhhCcccCCceEEEEcCcccCCHHHHHHHHHH
Confidence 2333331 111111 00000 000000 011122334567889988
Q ss_pred HcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 529 MEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 529 LDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
|+... +.+++|++|+.|+.+-+.+++|+ ..+.|..|+.
T Consensus 143 LEepp---~~~~fIL~t~d~~kil~tI~SRc-~~~~f~~l~~ 180 (527)
T PRK14969 143 LEEPP---EHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPP 180 (527)
T ss_pred HhCCC---CCEEEEEEeCChhhCchhHHHHH-HHHhcCCCCH
Confidence 88753 46788888888999998888887 5567777754
|
|
| >PRK14958 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=5.3e-05 Score=85.71 Aligned_cols=144 Identities=15% Similarity=0.105 Sum_probs=79.2
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhh------------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASC------------ 470 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~------------ 470 (646)
.++.+-+|+||+|.+.+++.|+.++.. +..+..+||||||+.++....+.+-+..-+
T Consensus 8 ~kyRP~~f~divGq~~v~~~L~~~~~~-----------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 76 (509)
T PRK14958 8 RKWRPRCFQEVIGQAPVVRALSNALDQ-----------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDC 76 (509)
T ss_pred HHHCCCCHHHhcCCHHHHHHHHHHHHh-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCC
Confidence 456788999999999999999988854 234578999999933333333322222211
Q ss_pred ---------cCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCC-------CCCchhhHHHHHHHHHHHcCCCC
Q 006411 471 ---------RQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKS-------DGEHESSRRLKTQFLIEMEGFDS 534 (646)
Q Consensus 471 ---------~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s-------~~~~e~s~rilneLL~eLDGl~~ 534 (646)
..|.++.||-.+...- ...+.....-.+....+ +.-|.-+....+.||..|+...
T Consensus 77 ~~C~~i~~g~~~d~~eidaas~~~v--------~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp- 147 (509)
T PRK14958 77 ENCREIDEGRFPDLFEVDAASRTKV--------EDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPP- 147 (509)
T ss_pred HHHHHHhcCCCceEEEEcccccCCH--------HHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccC-
Confidence 1122444442211100 00000000000000000 1112222345688998888754
Q ss_pred CCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCC
Q 006411 535 GSEQILLVGATNRPQELDEAARRRLTKRLYIPLPS 569 (646)
Q Consensus 535 ~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd 569 (646)
+.+.+|++|+.++.|-+.+++|+ .++.|..++
T Consensus 148 --~~~~fIlattd~~kl~~tI~SRc-~~~~f~~l~ 179 (509)
T PRK14958 148 --SHVKFILATTDHHKLPVTVLSRC-LQFHLAQLP 179 (509)
T ss_pred --CCeEEEEEECChHhchHHHHHHh-hhhhcCCCC
Confidence 36788888889999999988888 444565543
|
|
| >PRK06305 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=97.96 E-value=5.8e-05 Score=84.13 Aligned_cols=141 Identities=13% Similarity=0.154 Sum_probs=81.4
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhc-----------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCR----------- 471 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~----------- 471 (646)
.+..+.+|+||+|.+.+++.|+..+.. +..+..+||||||+.+....++.+-+..-+.
T Consensus 9 ~kyRP~~~~diiGq~~~v~~L~~~i~~-----------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~ 77 (451)
T PRK06305 9 RKYRPQTFSEILGQDAVVAVLKNALRF-----------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQ 77 (451)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcc
Confidence 345678999999999999999888854 2345789999999444444443333332221
Q ss_pred -----------CCeeeeeh--------hhhHHhhhcccccccchhhhhhhhhhccccCC---CCCchhhHHHHHHHHHHH
Q 006411 472 -----------QPAVIFVD--------EIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKS---DGEHESSRRLKTQFLIEM 529 (646)
Q Consensus 472 -----------aPsIIFID--------EIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s---~~~~e~s~rilneLL~eL 529 (646)
.+.++.|| +|..+... ..+ ....+.+.- +.-+..+....+.||..|
T Consensus 78 c~~C~~i~~~~~~d~~~i~g~~~~gid~ir~i~~~---------l~~---~~~~~~~kvvIIdead~lt~~~~n~LLk~l 145 (451)
T PRK06305 78 CASCKEISSGTSLDVLEIDGASHRGIEDIRQINET---------VLF---TPSKSRYKIYIIDEVHMLTKEAFNSLLKTL 145 (451)
T ss_pred cHHHHHHhcCCCCceEEeeccccCCHHHHHHHHHH---------HHh---hhhcCCCEEEEEecHHhhCHHHHHHHHHHh
Confidence 12233333 22211110 000 000000000 011112233567788888
Q ss_pred cCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 530 EGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 530 DGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
+... +.+++|++||.+..|.+++++|+. .++|+.++.
T Consensus 146 Eep~---~~~~~Il~t~~~~kl~~tI~sRc~-~v~f~~l~~ 182 (451)
T PRK06305 146 EEPP---QHVKFFLATTEIHKIPGTILSRCQ-KMHLKRIPE 182 (451)
T ss_pred hcCC---CCceEEEEeCChHhcchHHHHhce-EEeCCCCCH
Confidence 8743 467888888999999999999985 568877754
|
|
| >COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.95 E-value=7.7e-05 Score=78.74 Aligned_cols=137 Identities=23% Similarity=0.331 Sum_probs=91.8
Q ss_pred CCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhh----------------
Q 006411 406 PHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVAS---------------- 469 (646)
Q Consensus 406 p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar---------------- 469 (646)
.+-+|+|.+|.+.+|+.|.=.+..--.+ ....-.|||||||+-++..+.+-+-....
T Consensus 21 RP~~l~efiGQ~~vk~~L~ifI~AAk~r-------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~gD 93 (332)
T COG2255 21 RPKTLDEFIGQEKVKEQLQIFIKAAKKR-------GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKPGD 93 (332)
T ss_pred CcccHHHhcChHHHHHHHHHHHHHHHhc-------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccChhh
Confidence 3568999999999999998877663322 23457899999993222222222211111
Q ss_pred -------hcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCC---------
Q 006411 470 -------CRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFD--------- 533 (646)
Q Consensus 470 -------~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~--------- 533 (646)
-....|+|||||..|.+. +-.-|---|+.+.
T Consensus 94 laaiLt~Le~~DVLFIDEIHrl~~~---------------------------------vEE~LYpaMEDf~lDI~IG~gp 140 (332)
T COG2255 94 LAAILTNLEEGDVLFIDEIHRLSPA---------------------------------VEEVLYPAMEDFRLDIIIGKGP 140 (332)
T ss_pred HHHHHhcCCcCCeEEEehhhhcChh---------------------------------HHHHhhhhhhheeEEEEEccCC
Confidence 113569999999998651 0111122232221
Q ss_pred -C-----CCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCCCCcHHHHHHHHHHHhh
Q 006411 534 -S-----GSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSSGYSGSDMKNLVKEASM 586 (646)
Q Consensus 534 -~-----~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~GySGADL~~Lc~eAa~ 586 (646)
. .-....+||||.|.-.|..-|+.||.....+.. |+..||+.++..++.
T Consensus 141 ~Arsv~ldLppFTLIGATTr~G~lt~PLrdRFGi~~rlef----Y~~~eL~~Iv~r~a~ 195 (332)
T COG2255 141 AARSIRLDLPPFTLIGATTRAGMLTNPLRDRFGIIQRLEF----YTVEELEEIVKRSAK 195 (332)
T ss_pred ccceEeccCCCeeEeeeccccccccchhHHhcCCeeeeec----CCHHHHHHHHHHHHH
Confidence 1 124578999999999999999889988877766 999999999987774
|
|
| >PRK14953 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00012 Score=82.32 Aligned_cols=139 Identities=14% Similarity=0.167 Sum_probs=78.9
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhc------C----
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCR------Q---- 472 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~------a---- 472 (646)
.+..+-+|+||+|.+.+++.|+..+.. +..+..+||||||+.+. ..+..+|..+-.. .
T Consensus 8 ~kyRP~~f~diiGq~~i~~~L~~~i~~-----------~~i~hayLf~Gp~G~GK-TtlAr~lAk~L~c~~~~~~~pc~~ 75 (486)
T PRK14953 8 RKYRPKFFKEVIGQEIVVRILKNAVKL-----------QRVSHAYIFAGPRGTGK-TTIARILAKVLNCLNPQEGEPCGK 75 (486)
T ss_pred HhhCCCcHHHccChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCH-HHHHHHHHHHhcCcCCCCCCCCCc
Confidence 355678999999999999999888844 23456789999993333 4444444333210 1
Q ss_pred ------------Ceeeeeh--------hhhHHhhhcccccccchhhhhhhhh-hccccCC---CCCchhhHHHHHHHHHH
Q 006411 473 ------------PAVIFVD--------EIDSLLSQMLPYMHVHHIKLFCLKR-FYFQRKS---DGEHESSRRLKTQFLIE 528 (646)
Q Consensus 473 ------------PsIIFID--------EIDsL~~k~~~~~~~~~~~~~~~kr-~~~~R~s---~~~~e~s~rilneLL~e 528 (646)
|.++.|| +|..|.. .+... +.+.+.- +.-+..+....+.||..
T Consensus 76 c~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~-------------~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~ 142 (486)
T PRK14953 76 CENCVEIDKGSFPDLIEIDAASNRGIDDIRALRD-------------AVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKT 142 (486)
T ss_pred cHHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHH-------------HHHhCcccCCeeEEEEEChhhcCHHHHHHHHHH
Confidence 2233332 1222211 00000 0000000 11112223456778888
Q ss_pred HcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 529 MEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 529 LDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
|+... ..+++|.+|+.++.|.+++++|+. ++.|++|+.
T Consensus 143 LEepp---~~~v~Il~tt~~~kl~~tI~SRc~-~i~f~~ls~ 180 (486)
T PRK14953 143 LEEPP---PRTIFILCTTEYDKIPPTILSRCQ-RFIFSKPTK 180 (486)
T ss_pred HhcCC---CCeEEEEEECCHHHHHHHHHHhce-EEEcCCCCH
Confidence 87653 356666677788999999998885 577877754
|
|
| >PRK14959 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=7.1e-05 Score=86.37 Aligned_cols=140 Identities=18% Similarity=0.161 Sum_probs=80.9
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhh-h-----------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVAS-C----------- 470 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar-~----------- 470 (646)
.++.+.+|+||+|.+.+++.|..++.. +..+..+||||||+.++.. +-.+|..+- +
T Consensus 8 ~KyRP~sf~dIiGQe~v~~~L~~ai~~-----------~ri~ha~Lf~GPpG~GKTt-iArilAk~L~C~~~~~~~pCg~ 75 (624)
T PRK14959 8 ARYRPQTFAEVAGQETVKAILSRAAQE-----------NRVAPAYLFSGTRGVGKTT-IARIFAKALNCETAPTGEPCNT 75 (624)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHH-HHHHHHHhccccCCCCCCCCcc
Confidence 456788999999999999999988854 1224689999999333333 333333221 1
Q ss_pred ----------cCCeeeeehh--------hhHHhhhcccccccchhhhhhhhhhccccC---CCCCchhhHHHHHHHHHHH
Q 006411 471 ----------RQPAVIFVDE--------IDSLLSQMLPYMHVHHIKLFCLKRFYFQRK---SDGEHESSRRLKTQFLIEM 529 (646)
Q Consensus 471 ----------~aPsIIFIDE--------IDsL~~k~~~~~~~~~~~~~~~kr~~~~R~---s~~~~e~s~rilneLL~eL 529 (646)
..|.+++||- |..|.. ........+.+. -+.-+.......+.||..|
T Consensus 76 C~sC~~i~~g~hpDv~eId~a~~~~Id~iR~L~~------------~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~L 143 (624)
T PRK14959 76 CEQCRKVTQGMHVDVVEIDGASNRGIDDAKRLKE------------AIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTL 143 (624)
T ss_pred cHHHHHHhcCCCCceEEEecccccCHHHHHHHHH------------HHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHh
Confidence 1233555532 111110 000000000000 0111222234568888888
Q ss_pred cCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 530 EGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 530 DGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
+... ..+++|++||.+..|.+.+++|+. +|.|+.++.
T Consensus 144 EEP~---~~~ifILaTt~~~kll~TI~SRcq-~i~F~pLs~ 180 (624)
T PRK14959 144 EEPP---ARVTFVLATTEPHKFPVTIVSRCQ-HFTFTRLSE 180 (624)
T ss_pred hccC---CCEEEEEecCChhhhhHHHHhhhh-ccccCCCCH
Confidence 7643 468888899999999999888884 567777653
|
|
| >PRK00440 rfc replication factor C small subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.93 E-value=6.4e-05 Score=77.82 Aligned_cols=119 Identities=19% Similarity=0.192 Sum_probs=75.8
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhc-----------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCR----------- 471 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~----------- 471 (646)
+++.+.+|+|+.|.+++++.|...+.. +.. ..+||||||+.+....++.+.......
T Consensus 9 ~kyrP~~~~~~~g~~~~~~~l~~~i~~-----------~~~-~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~ 76 (319)
T PRK00440 9 EKYRPRTLDEIVGQEEIVERLKSYVKE-----------KNM-PHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNA 76 (319)
T ss_pred hhhCCCcHHHhcCcHHHHHHHHHHHhC-----------CCC-CeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecc
Confidence 456678999999999999999988743 111 248999999555555555554432110
Q ss_pred -------------------------CCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHH
Q 006411 472 -------------------------QPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFL 526 (646)
Q Consensus 472 -------------------------aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL 526 (646)
.+.+|+|||+|.+.. ...+.|+
T Consensus 77 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~---------------------------------~~~~~L~ 123 (319)
T PRK00440 77 SDERGIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS---------------------------------DAQQALR 123 (319)
T ss_pred ccccchHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH---------------------------------HHHHHHH
Confidence 122444455444421 1234566
Q ss_pred HHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 527 IEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 527 ~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
..++.... ...+|.+||.+..+.+++.+|+. .+.+++|+.
T Consensus 124 ~~le~~~~---~~~lIl~~~~~~~l~~~l~sr~~-~~~~~~l~~ 163 (319)
T PRK00440 124 RTMEMYSQ---NTRFILSCNYSSKIIDPIQSRCA-VFRFSPLKK 163 (319)
T ss_pred HHHhcCCC---CCeEEEEeCCccccchhHHHHhh-eeeeCCCCH
Confidence 66665443 35566678888888888888886 478887764
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00013 Score=64.49 Aligned_cols=45 Identities=40% Similarity=0.615 Sum_probs=32.3
Q ss_pred HHHHHHHcCCCCC---CCcEEEEEecCCCC--cCCHHHHhccccEEEeCC
Q 006411 523 TQFLIEMEGFDSG---SEQILLVGATNRPQ--ELDEAARRRLTKRLYIPL 567 (646)
Q Consensus 523 neLL~eLDGl~~~---~~~VlVIaATNrPd--~LDpALlRRFDr~I~Ipl 567 (646)
..++..+..+... ..++.||++||.+. .+++.+..||+.+|++++
T Consensus 102 ~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~r~~~~i~~~~ 151 (151)
T cd00009 102 NALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYDRLDIRIVIPL 151 (151)
T ss_pred HHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHhhhccEeecCC
Confidence 3444444444321 35789999999988 789999999998888763
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00019 Score=71.70 Aligned_cols=122 Identities=18% Similarity=0.145 Sum_probs=72.1
Q ss_pred CCCCccccccc--ChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhcC---------
Q 006411 404 RDPHVRWDDIA--GLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCRQ--------- 472 (646)
Q Consensus 404 ~~p~VsfdDIg--Gle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~a--------- 472 (646)
..++.+|+++. +-+.+...+++++.. ......++|+|||+.++...++.+...+....
T Consensus 11 ~~~~~~~d~f~~~~~~~~~~~l~~~~~~-----------~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~ 79 (227)
T PRK08903 11 PPPPPTFDNFVAGENAELVARLRELAAG-----------PVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAA 79 (227)
T ss_pred CCChhhhcccccCCcHHHHHHHHHHHhc-----------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehH
Confidence 45568888855 345666666665431 12346899999997777777777776653322
Q ss_pred -----------CeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCCCCCcEEE
Q 006411 473 -----------PAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILL 541 (646)
Q Consensus 473 -----------PsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~~~~VlV 541 (646)
..+|+|||+|.+-. .....|+..++.... ....+|
T Consensus 80 ~~~~~~~~~~~~~~liiDdi~~l~~---------------------------------~~~~~L~~~~~~~~~-~~~~~v 125 (227)
T PRK08903 80 SPLLAFDFDPEAELYAVDDVERLDD---------------------------------AQQIALFNLFNRVRA-HGQGAL 125 (227)
T ss_pred HhHHHHhhcccCCEEEEeChhhcCc---------------------------------hHHHHHHHHHHHHHH-cCCcEE
Confidence 34666666665421 011233334443333 223334
Q ss_pred EEecCCCC---cCCHHHHhcc--ccEEEeCCCCC
Q 006411 542 VGATNRPQ---ELDEAARRRL--TKRLYIPLPSS 570 (646)
Q Consensus 542 IaATNrPd---~LDpALlRRF--Dr~I~IplPd~ 570 (646)
|.|++.+. .+.+.++.|| ...+.+|+|+.
T Consensus 126 l~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~ 159 (227)
T PRK08903 126 LVAGPAAPLALPLREDLRTRLGWGLVYELKPLSD 159 (227)
T ss_pred EEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCH
Confidence 44444332 3567888787 57889999985
|
|
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00022 Score=70.56 Aligned_cols=129 Identities=17% Similarity=0.251 Sum_probs=74.3
Q ss_pred CCccccccc--ChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhc------------
Q 006411 406 PHVRWDDIA--GLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCR------------ 471 (646)
Q Consensus 406 p~VsfdDIg--Gle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~------------ 471 (646)
...+|+++. +.+.+.+.|++++. ...+..|||||||+.++...++.+...+...
T Consensus 10 ~~~~~~~~~~~~~~~~~~~l~~~~~------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 10 DDPTFDNFYAGGNAELLAALRQLAA------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred CchhhcCcCcCCcHHHHHHHHHHHh------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 456677764 46667777777653 1235789999999666766777766554311
Q ss_pred ------------CCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCCCCCcE
Q 006411 472 ------------QPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQI 539 (646)
Q Consensus 472 ------------aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~~~~V 539 (646)
.+.+|+|||+|.+.. . ... ...+-.++..+. . .+..
T Consensus 78 ~~~~~~~~~~~~~~~lLvIDdi~~l~~---------------------~------~~~-~~~L~~~l~~~~---~-~~~~ 125 (226)
T TIGR03420 78 AQADPEVLEGLEQADLVCLDDVEAIAG---------------------Q------PEW-QEALFHLYNRVR---E-AGGR 125 (226)
T ss_pred HHhHHHHHhhcccCCEEEEeChhhhcC---------------------C------hHH-HHHHHHHHHHHH---H-cCCe
Confidence 234788888887643 0 000 112223333322 2 1234
Q ss_pred EEEEecCCCCcCC---HHHHhccc--cEEEeCCCCCCCcHHHHHHHHH
Q 006411 540 LLVGATNRPQELD---EAARRRLT--KRLYIPLPSSGYSGSDMKNLVK 582 (646)
Q Consensus 540 lVIaATNrPd~LD---pALlRRFD--r~I~IplPd~GySGADL~~Lc~ 582 (646)
+||.++..+..++ +.+.+||. .+|.+|.|+. .++..+++
T Consensus 126 iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~----~e~~~~l~ 169 (226)
T TIGR03420 126 LLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSD----EEKIAALQ 169 (226)
T ss_pred EEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCH----HHHHHHHH
Confidence 5555554554443 77887774 7888888875 44444443
|
Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. |
| >PRK14949 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=7e-05 Score=89.11 Aligned_cols=141 Identities=19% Similarity=0.179 Sum_probs=82.5
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhc-----CCe---
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCR-----QPA--- 474 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~-----aPs--- 474 (646)
.+..+.+|+||+|.+.+++.|+.++.. ++.+..+||||||+-++....+.+-+...+. .||
T Consensus 8 eKyRP~tFddIIGQe~Iv~~LknaI~~-----------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C 76 (944)
T PRK14949 8 RKWRPATFEQMVGQSHVLHALTNALTQ-----------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVC 76 (944)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHh-----------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCc
Confidence 456678999999999999999887754 1335778999999444444444443333221 122
Q ss_pred -------------eeeehh--------hhHHhhhcccccccchhhhhhhhhhccccC---CCCCchhhHHHHHHHHHHHc
Q 006411 475 -------------VIFVDE--------IDSLLSQMLPYMHVHHIKLFCLKRFYFQRK---SDGEHESSRRLKTQFLIEME 530 (646)
Q Consensus 475 -------------IIFIDE--------IDsL~~k~~~~~~~~~~~~~~~kr~~~~R~---s~~~~e~s~rilneLL~eLD 530 (646)
++.||- |-.|.. .+......+++. -+.-+..+....+.||..|+
T Consensus 77 ~sC~~i~~g~~~DviEidAas~~kVDdIReLie------------~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLE 144 (944)
T PRK14949 77 SSCVEIAQGRFVDLIEVDAASRTKVDDTRELLD------------NVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLE 144 (944)
T ss_pred hHHHHHhcCCCceEEEeccccccCHHHHHHHHH------------HHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHh
Confidence 232322 111111 000000000000 01122234557788999888
Q ss_pred CCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 531 GFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 531 Gl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
... ..+.+|++|+.+..|-+.|+.|+ .++.|..++.
T Consensus 145 EPP---~~vrFILaTTe~~kLl~TIlSRC-q~f~fkpLs~ 180 (944)
T PRK14949 145 EPP---EHVKFLLATTDPQKLPVTVLSRC-LQFNLKSLTQ 180 (944)
T ss_pred ccC---CCeEEEEECCCchhchHHHHHhh-eEEeCCCCCH
Confidence 754 36778888999999999999988 4566666543
|
|
| >TIGR02903 spore_lon_C ATP-dependent protease, Lon family | Back alignment and domain information |
|---|
Probab=97.88 E-value=5.1e-05 Score=87.61 Aligned_cols=61 Identities=21% Similarity=0.270 Sum_probs=46.3
Q ss_pred hhhhcccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhh
Q 006411 397 VSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVAS 469 (646)
Q Consensus 397 v~~~i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar 469 (646)
+...++....+-+|++|+|.+.+.+.+...+..+ .+..+||+|||+.+++..++.++..++
T Consensus 140 ~~~~~~~~~rp~~~~~iiGqs~~~~~l~~~ia~~------------~~~~vlL~Gp~GtGKTTLAr~i~~~~~ 200 (615)
T TIGR02903 140 LHKSAQSLLRPRAFSEIVGQERAIKALLAKVASP------------FPQHIILYGPPGVGKTTAARLALEEAK 200 (615)
T ss_pred hhhHHhhhcCcCcHHhceeCcHHHHHHHHHHhcC------------CCCeEEEECCCCCCHHHHHHHHHHhhh
Confidence 3455666667889999999999988887666432 135699999998888888888877664
|
Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC. |
| >PRK14951 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00016 Score=83.70 Aligned_cols=47 Identities=19% Similarity=0.142 Sum_probs=34.9
Q ss_pred HHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 520 RLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 520 rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
.-.|.||..|+... ..+++|++|+.|..|.+.+++|+ .++.|..++.
T Consensus 139 ~a~NaLLKtLEEPP---~~~~fIL~Ttd~~kil~TIlSRc-~~~~f~~Ls~ 185 (618)
T PRK14951 139 TAFNAMLKTLEEPP---EYLKFVLATTDPQKVPVTVLSRC-LQFNLRPMAP 185 (618)
T ss_pred HHHHHHHHhcccCC---CCeEEEEEECCchhhhHHHHHhc-eeeecCCCCH
Confidence 34677887777643 46778888888999999988898 5567766653
|
|
| >PRK08451 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00017 Score=82.14 Aligned_cols=140 Identities=16% Similarity=0.136 Sum_probs=88.0
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhh------------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASC------------ 470 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~------------ 470 (646)
.++.+.+|+||+|.+.+++.|+..+.. +..+..+||||||+.+....++.+....-+
T Consensus 6 ~KyRP~~fdeiiGqe~v~~~L~~~I~~-----------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C 74 (535)
T PRK08451 6 LKYRPKHFDELIGQESVSKTLSLALDN-----------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTC 74 (535)
T ss_pred HHHCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 456788999999999999999888743 234578899999955555555554443321
Q ss_pred ---------cCCeeeeehhh-----hHHhhhcccccccchhhhhhhh----hhccccC---CCCCchhhHHHHHHHHHHH
Q 006411 471 ---------RQPAVIFVDEI-----DSLLSQMLPYMHVHHIKLFCLK----RFYFQRK---SDGEHESSRRLKTQFLIEM 529 (646)
Q Consensus 471 ---------~aPsIIFIDEI-----DsL~~k~~~~~~~~~~~~~~~k----r~~~~R~---s~~~~e~s~rilneLL~eL 529 (646)
..|.++.+|.. |.+-. .+.. .+.+.+. -+.-+..+....+.||..|
T Consensus 75 ~~C~~~~~~~h~dv~eldaas~~gId~IRe-------------lie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~L 141 (535)
T PRK08451 75 IQCQSALENRHIDIIEMDAASNRGIDDIRE-------------LIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTL 141 (535)
T ss_pred HHHHHHhhcCCCeEEEeccccccCHHHHHH-------------HHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHH
Confidence 23446655542 22221 1100 0000000 0112333456778899999
Q ss_pred cCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 530 EGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 530 DGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
+.... .+.+|.+|+.+..|.++++.|. .+++|..++.
T Consensus 142 EEpp~---~t~FIL~ttd~~kL~~tI~SRc-~~~~F~~Ls~ 178 (535)
T PRK08451 142 EEPPS---YVKFILATTDPLKLPATILSRT-QHFRFKQIPQ 178 (535)
T ss_pred hhcCC---ceEEEEEECChhhCchHHHhhc-eeEEcCCCCH
Confidence 88633 5677777888999999999996 4678887764
|
|
| >PRK14957 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0002 Score=81.81 Aligned_cols=141 Identities=18% Similarity=0.142 Sum_probs=84.0
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhh-----c------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASC-----R------ 471 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~-----~------ 471 (646)
.+..+.+|+||+|.+.+++.|...+.. +..+..+||||||+.++....+.+-....+ .
T Consensus 8 ~KyRP~~f~diiGq~~~v~~L~~~i~~-----------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C 76 (546)
T PRK14957 8 RKYRPQSFAEVAGQQHALNSLVHALET-----------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKC 76 (546)
T ss_pred HHHCcCcHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCccc
Confidence 345678999999999999999887754 233577999999955555544444443322 0
Q ss_pred ----------CCeeeeeh--------hhhHHhhhcccccccchhhhhhhhhhccccCC---CCCchhhHHHHHHHHHHHc
Q 006411 472 ----------QPAVIFVD--------EIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKS---DGEHESSRRLKTQFLIEME 530 (646)
Q Consensus 472 ----------aPsIIFID--------EIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s---~~~~e~s~rilneLL~eLD 530 (646)
.|.++.|| ++..|... .+...+.+.+.- +.-+..+....+.||..|+
T Consensus 77 ~sC~~i~~~~~~dlieidaas~~gvd~ir~ii~~------------~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LE 144 (546)
T PRK14957 77 ENCVAINNNSFIDLIEIDAASRTGVEETKEILDN------------IQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLE 144 (546)
T ss_pred HHHHHHhcCCCCceEEeecccccCHHHHHHHHHH------------HHhhhhcCCcEEEEEechhhccHHHHHHHHHHHh
Confidence 12344332 33333320 000001111100 1112233456788998888
Q ss_pred CCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 531 GFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 531 Gl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
... +.+++|++|+.+..|-+.++.|+ ..++|..++.
T Consensus 145 epp---~~v~fIL~Ttd~~kil~tI~SRc-~~~~f~~Ls~ 180 (546)
T PRK14957 145 EPP---EYVKFILATTDYHKIPVTILSRC-IQLHLKHISQ 180 (546)
T ss_pred cCC---CCceEEEEECChhhhhhhHHHhe-eeEEeCCCCH
Confidence 653 35777777778999999988888 6677877754
|
|
| >PRK14955 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00018 Score=78.76 Aligned_cols=143 Identities=18% Similarity=0.193 Sum_probs=78.6
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhh-h-----------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVAS-C----------- 470 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar-~----------- 470 (646)
.+..+.+|++|+|.+.+++.|+..+.. +..+..+||||||+.+... +-.+|..+- +
T Consensus 8 ~k~RP~~~~eiiGq~~~~~~L~~~~~~-----------~~~~ha~lf~Gp~G~GKtt-~A~~~a~~l~c~~~~~~~~~~~ 75 (397)
T PRK14955 8 RKYRPKKFADITAQEHITRTIQNSLRM-----------GRVGHGYIFSGLRGVGKTT-AARVFAKAVNCQRMIDDADYLQ 75 (397)
T ss_pred HhcCCCcHhhccChHHHHHHHHHHHHh-----------CCcceeEEEECCCCCCHHH-HHHHHHHHhcCCCCcCcccccc
Confidence 456788999999999999999887753 2346789999999443433 333333222 2
Q ss_pred --cCCe----------------eeee--------hhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHH
Q 006411 471 --RQPA----------------VIFV--------DEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQ 524 (646)
Q Consensus 471 --~aPs----------------IIFI--------DEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilne 524 (646)
..|| ++.| |+|-.+.... ...+++...+...- +.-+..+..-.+.
T Consensus 76 ~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~------~~~p~~~~~kvvII---dea~~l~~~~~~~ 146 (397)
T PRK14955 76 EVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENV------RYGPQKGRYRVYII---DEVHMLSIAAFNA 146 (397)
T ss_pred cCCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHH------hhchhcCCeEEEEE---eChhhCCHHHHHH
Confidence 0122 3333 3333332200 00011111000000 1111122334567
Q ss_pred HHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 525 FLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 525 LL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
||..|+... +.+++|++|+.+..|-+++++|+. .++|+.++.
T Consensus 147 LLk~LEep~---~~t~~Il~t~~~~kl~~tl~sR~~-~v~f~~l~~ 188 (397)
T PRK14955 147 FLKTLEEPP---PHAIFIFATTELHKIPATIASRCQ-RFNFKRIPL 188 (397)
T ss_pred HHHHHhcCC---CCeEEEEEeCChHHhHHHHHHHHH-HhhcCCCCH
Confidence 887776543 356666677778888888888875 567776653
|
|
| >PRK07994 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00014 Score=84.50 Aligned_cols=141 Identities=19% Similarity=0.161 Sum_probs=82.5
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhc-----CC----
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCR-----QP---- 473 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~-----aP---- 473 (646)
.+..+-+|+||+|.+.+++.|+..+.. +..+..+||+|||+.++....+.+-+..-+. .|
T Consensus 8 ~KyRP~~f~divGQe~vv~~L~~~l~~-----------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C 76 (647)
T PRK07994 8 RKWRPQTFAEVVGQEHVLTALANALDL-----------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGEC 76 (647)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCC
Confidence 345678999999999999999887754 2235778999999443333333332222221 12
Q ss_pred ------------eeeeehh--------hhHHhhhcccccccchhhhhhhhhhccccCC---CCCchhhHHHHHHHHHHHc
Q 006411 474 ------------AVIFVDE--------IDSLLSQMLPYMHVHHIKLFCLKRFYFQRKS---DGEHESSRRLKTQFLIEME 530 (646)
Q Consensus 474 ------------sIIFIDE--------IDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s---~~~~e~s~rilneLL~eLD 530 (646)
.++.||- |-.|.. ....+...+.+.- +.-|.-+....|.||..|+
T Consensus 77 ~~C~~i~~g~~~D~ieidaas~~~VddiR~li~------------~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLE 144 (647)
T PRK07994 77 DNCREIEQGRFVDLIEIDAASRTKVEDTRELLD------------NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLE 144 (647)
T ss_pred HHHHHHHcCCCCCceeecccccCCHHHHHHHHH------------HHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHH
Confidence 2333332 111111 0000000000000 1122233456788999888
Q ss_pred CCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 531 GFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 531 Gl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
.-. +.+++|++|+.++.|-+.+++|+ ..+.|..++.
T Consensus 145 EPp---~~v~FIL~Tt~~~kLl~TI~SRC-~~~~f~~Ls~ 180 (647)
T PRK07994 145 EPP---EHVKFLLATTDPQKLPVTILSRC-LQFHLKALDV 180 (647)
T ss_pred cCC---CCeEEEEecCCccccchHHHhhh-eEeeCCCCCH
Confidence 753 46888888999999999999996 6677887764
|
|
| >PRK14965 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=8.8e-05 Score=85.07 Aligned_cols=144 Identities=17% Similarity=0.179 Sum_probs=86.7
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhc-----------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCR----------- 471 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~----------- 471 (646)
.+..+-+|+||+|.+++++.|...+.. +..+..+||||||+.+.....+.+-+..-+.
T Consensus 8 ~k~RP~~f~~iiGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c 76 (576)
T PRK14965 8 RKYRPQTFSDLTGQEHVSRTLQNAIDT-----------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVC 76 (576)
T ss_pred HHhCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcc
Confidence 456788999999999999999988754 2346789999999444444444443333221
Q ss_pred ----------CCeeeeeh--------hhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCC
Q 006411 472 ----------QPAVIFVD--------EIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFD 533 (646)
Q Consensus 472 ----------aPsIIFID--------EIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~ 533 (646)
.+.++.|| +|..|... +...+.....+..- -+.-+.-+....|.||..|+...
T Consensus 77 ~~c~~i~~g~~~d~~eid~~s~~~v~~ir~l~~~------~~~~p~~~~~KVvI---Idev~~Lt~~a~naLLk~LEepp 147 (576)
T PRK14965 77 PPCVEITEGRSVDVFEIDGASNTGVDDIRELREN------VKYLPSRSRYKIFI---IDEVHMLSTNAFNALLKTLEEPP 147 (576)
T ss_pred HHHHHHhcCCCCCeeeeeccCccCHHHHHHHHHH------HHhccccCCceEEE---EEChhhCCHHHHHHHHHHHHcCC
Confidence 12244443 44444330 00001111000000 01112223445788999998753
Q ss_pred CCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 534 SGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 534 ~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
+.+++|++|+.|+.|.+.+++|+. ++.|..++.
T Consensus 148 ---~~~~fIl~t~~~~kl~~tI~SRc~-~~~f~~l~~ 180 (576)
T PRK14965 148 ---PHVKFIFATTEPHKVPITILSRCQ-RFDFRRIPL 180 (576)
T ss_pred ---CCeEEEEEeCChhhhhHHHHHhhh-hhhcCCCCH
Confidence 468888899999999999998874 567766643
|
|
| >KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00016 Score=83.73 Aligned_cols=146 Identities=22% Similarity=0.368 Sum_probs=87.8
Q ss_pred ccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCC-------------------------------------
Q 006411 411 DDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP------------------------------------- 453 (646)
Q Consensus 411 dDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPP------------------------------------- 453 (646)
+|=-||+++|+.|.|++.--..+.. ...+=+.|+|||
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs------~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHR 484 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGS------VQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHR 484 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhccc------CCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccc
Confidence 3567899999999998866222211 112346688999
Q ss_pred ---CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHc
Q 006411 454 ---IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEME 530 (646)
Q Consensus 454 ---vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLD 530 (646)
+|...-.+=.-.+......| +|+|||||.|+. +-.++. .+.||..||
T Consensus 485 RTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~-----------------------g~qGDP------asALLElLD 534 (906)
T KOG2004|consen 485 RTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGS-----------------------GHQGDP------ASALLELLD 534 (906)
T ss_pred eeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCC-----------------------CCCCCh------HHHHHHhcC
Confidence 22222222222333333445 788999999974 122222 134454444
Q ss_pred CCCC------------CCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC---------------------CCcH---
Q 006411 531 GFDS------------GSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS---------------------GYSG--- 574 (646)
Q Consensus 531 Gl~~------------~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~---------------------GySG--- 574 (646)
--.. .-.+|++|+|+|..+.|+++|+.|+.. |.+|-+ |.+.
T Consensus 535 PEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlDRMEv---IelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v 611 (906)
T KOG2004|consen 535 PEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLDRMEV---IELSGYVAEEKVKIAERYLIPQALKDCGLKPEQV 611 (906)
T ss_pred hhhccchhhhccccccchhheEEEEeccccccCChhhhhhhhe---eeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhc
Confidence 2211 124699999999999999999988753 344432 4433
Q ss_pred --------HHHHHHHHHHhhhHHHHHHHh
Q 006411 575 --------SDMKNLVKEASMGPLREALRQ 595 (646)
Q Consensus 575 --------ADL~~Lc~eAa~~Airr~l~~ 595 (646)
+-|+.-|++|..+.+.+.+..
T Consensus 612 ~is~~al~~lI~~YcrEaGVRnLqk~iek 640 (906)
T KOG2004|consen 612 KISDDALLALIERYCREAGVRNLQKQIEK 640 (906)
T ss_pred CccHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 236677788887777766543
|
|
| >TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX) | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00027 Score=78.25 Aligned_cols=115 Identities=23% Similarity=0.319 Sum_probs=66.9
Q ss_pred cccChHHHHHHHHHHHHhhccCcccc-c-----cCCCCCccccccCCCCchH----------------------------
Q 006411 412 DIAGLEHAKKCVMEMVIWPLLRPDIF-K-----GCRSPGKGLLLFGPPIGEG---------------------------- 457 (646)
Q Consensus 412 DIgGle~~K~~L~E~V~lPL~~pelf-~-----~~~~PprGVLLyGPPvGes---------------------------- 457 (646)
-|+|.+++++.|..+|.....+-... . ........|||+|||+.+.
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY 157 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence 48999999999988875433332110 0 0112246899999992211
Q ss_pred -----HHHHHHHHHHh----hhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCC--CCchhhHHHHHHHH
Q 006411 458 -----EKLVRALFGVA----SCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSD--GEHESSRRLKTQFL 526 (646)
Q Consensus 458 -----ek~Vr~lF~~A----r~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~--~~~e~s~rilneLL 526 (646)
+..+..++..+ ...+|+||||||||.+.. ++.+. ........+.+.||
T Consensus 158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~---------------------~~~~~s~~~dvsg~~vq~~LL 216 (413)
T TIGR00382 158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISR---------------------KSENPSITRDVSGEGVQQALL 216 (413)
T ss_pred ccccHHHHHHHHHHhCcccHHhcccceEEecccchhch---------------------hhccccccccccchhHHHHHH
Confidence 22333333322 234678999999999986 21111 01111124778888
Q ss_pred HHHcCCCC----------CCCcEEEEEecCC
Q 006411 527 IEMEGFDS----------GSEQILLVGATNR 547 (646)
Q Consensus 527 ~eLDGl~~----------~~~~VlVIaATNr 547 (646)
..|+|.-. ...+.++|+|+|-
T Consensus 217 ~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNi 247 (413)
T TIGR00382 217 KIIEGTVANVPPQGGRKHPYQEFIQIDTSNI 247 (413)
T ss_pred HHhhccceecccCCCccccCCCeEEEEcCCc
Confidence 88887631 1235688888886
|
A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction. |
| >PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00046 Score=71.66 Aligned_cols=128 Identities=22% Similarity=0.335 Sum_probs=88.6
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhc-----------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCR----------- 471 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~----------- 471 (646)
.....+.++++.|++.+|+.|.+.....+. +.|...+||||+++.++...|+++.......
T Consensus 19 ~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--------G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~ 90 (249)
T PF05673_consen 19 KHPDPIRLDDLIGIERQKEALIENTEQFLQ--------GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKED 90 (249)
T ss_pred CCCCCCCHHHhcCHHHHHHHHHHHHHHHHc--------CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHH
Confidence 445689999999999999999988876442 4577899999999777788888876644332
Q ss_pred ---------------CCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCC-CC
Q 006411 472 ---------------QPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFD-SG 535 (646)
Q Consensus 472 ---------------aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~-~~ 535 (646)
.+-|||+|++. +. ..+. -...|-..|||-- ..
T Consensus 91 L~~l~~l~~~l~~~~~kFIlf~DDLs--Fe-------------------------~~d~-----~yk~LKs~LeGgle~~ 138 (249)
T PF05673_consen 91 LGDLPELLDLLRDRPYKFILFCDDLS--FE-------------------------EGDT-----EYKALKSVLEGGLEAR 138 (249)
T ss_pred hccHHHHHHHHhcCCCCEEEEecCCC--CC-------------------------CCcH-----HHHHHHHHhcCccccC
Confidence 24466666532 11 1111 2356666778654 34
Q ss_pred CCcEEEEEecCCCCcCCHH-----------------------HHhccccEEEeCCCCC
Q 006411 536 SEQILLVGATNRPQELDEA-----------------------ARRRLTKRLYIPLPSS 570 (646)
Q Consensus 536 ~~~VlVIaATNrPd~LDpA-----------------------LlRRFDr~I~IplPd~ 570 (646)
.++|+|.+|+||-..+.+- |--||.-.|.|..|+.
T Consensus 139 P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q 196 (249)
T PF05673_consen 139 PDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQ 196 (249)
T ss_pred CCcEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCH
Confidence 6799999999984333221 2228999999999985
|
|
| >KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00011 Score=78.24 Aligned_cols=121 Identities=20% Similarity=0.219 Sum_probs=86.6
Q ss_pred ccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHH----HH------------
Q 006411 402 MDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRA----LF------------ 465 (646)
Q Consensus 402 ~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~----lF------------ 465 (646)
.+++.+-+|+|+.|.+.+++.|+..+.. - --..+||||||+.+....++. +|
T Consensus 27 teKYrPkt~de~~gQe~vV~~L~~a~~~-~-----------~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~l 94 (346)
T KOG0989|consen 27 TEKYRPKTFDELAGQEHVVQVLKNALLR-R-----------ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLEL 94 (346)
T ss_pred HHHhCCCcHHhhcchHHHHHHHHHHHhh-c-----------CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhh
Confidence 3466788999999999999999998855 1 124689999994443333222 21
Q ss_pred ------------------HHhhhcC----------CeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchh
Q 006411 466 ------------------GVASCRQ----------PAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHES 517 (646)
Q Consensus 466 ------------------~~Ar~~a----------PsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~ 517 (646)
+...... +-||+|||.|++..
T Consensus 95 naSderGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmts------------------------------- 143 (346)
T KOG0989|consen 95 NASDERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTS------------------------------- 143 (346)
T ss_pred cccccccccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhH-------------------------------
Confidence 1111111 15999999999854
Q ss_pred hHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 518 SRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 518 s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
...+.|..-|+.+.. .+.+|..||.++.|..-+.+|..+-.+=++++.
T Consensus 144 --daq~aLrr~mE~~s~---~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~ 191 (346)
T KOG0989|consen 144 --DAQAALRRTMEDFSR---TTRFILICNYLSRIIRPLVSRCQKFRFKKLKDE 191 (346)
T ss_pred --HHHHHHHHHHhcccc---ceEEEEEcCChhhCChHHHhhHHHhcCCCcchH
Confidence 246788888988654 678888999999999999998888766677764
|
|
| >PRK14950 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00051 Score=78.95 Aligned_cols=140 Identities=17% Similarity=0.154 Sum_probs=81.4
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhc-----------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCR----------- 471 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~----------- 471 (646)
+++.+.+|+||+|.+.+++.|+..+.. +..+..+||||||+.++...++.+-+...+.
T Consensus 8 ~kyRP~~~~eiiGq~~~~~~L~~~i~~-----------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~ 76 (585)
T PRK14950 8 RKWRSQTFAELVGQEHVVQTLRNAIAE-----------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGT 76 (585)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHHHh-----------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 466789999999999999999887754 1234678999999555555555544333221
Q ss_pred -----------CCeeeeehh--------hhHHhhhcccccccchhhhhhhhh-hccccCC---CCCchhhHHHHHHHHHH
Q 006411 472 -----------QPAVIFVDE--------IDSLLSQMLPYMHVHHIKLFCLKR-FYFQRKS---DGEHESSRRLKTQFLIE 528 (646)
Q Consensus 472 -----------aPsIIFIDE--------IDsL~~k~~~~~~~~~~~~~~~kr-~~~~R~s---~~~~e~s~rilneLL~e 528 (646)
.|.++.||. |-.|.. .|... +.+.+.- +.-+.......+.||..
T Consensus 77 c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~-------------~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~ 143 (585)
T PRK14950 77 CEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIE-------------RVQFRPALARYKVYIIDEVHMLSTAAFNALLKT 143 (585)
T ss_pred CHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHH-------------HHhhCcccCCeEEEEEeChHhCCHHHHHHHHHH
Confidence 133333332 111111 00000 0000000 11111223456788888
Q ss_pred HcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 529 MEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 529 LDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
|+.... .+++|.+|+.++.+.+.+++|+. +++|..++.
T Consensus 144 LEepp~---~tv~Il~t~~~~kll~tI~SR~~-~i~f~~l~~ 181 (585)
T PRK14950 144 LEEPPP---HAIFILATTEVHKVPATILSRCQ-RFDFHRHSV 181 (585)
T ss_pred HhcCCC---CeEEEEEeCChhhhhHHHHhccc-eeeCCCCCH
Confidence 877543 56777777788888888888875 467776654
|
|
| >PRK07764 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00017 Score=85.93 Aligned_cols=141 Identities=18% Similarity=0.146 Sum_probs=81.9
Q ss_pred ccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhc----------
Q 006411 402 MDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCR---------- 471 (646)
Q Consensus 402 ~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~---------- 471 (646)
..++.+.+|+||+|.+.+++.|+.++.. +..+..+|||||++-++....+.+-....+.
T Consensus 6 ~~KyRP~~f~eiiGqe~v~~~L~~~i~~-----------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~ 74 (824)
T PRK07764 6 YRRYRPATFAEVIGQEHVTEPLSTALDS-----------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGE 74 (824)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHh-----------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcc
Confidence 3567789999999999999999888754 2345789999999443333333332222210
Q ss_pred -------------CCeeeeehh--------hhHHhhhcccccccchhhhhhhhhhccccC---CCCCchhhHHHHHHHHH
Q 006411 472 -------------QPAVIFVDE--------IDSLLSQMLPYMHVHHIKLFCLKRFYFQRK---SDGEHESSRRLKTQFLI 527 (646)
Q Consensus 472 -------------aPsIIFIDE--------IDsL~~k~~~~~~~~~~~~~~~kr~~~~R~---s~~~~e~s~rilneLL~ 527 (646)
.+.++.||- |..|.. ...+ .....+.+ -+.-+..+....|.||.
T Consensus 75 C~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~----------~~~~--~p~~~~~KV~IIDEad~lt~~a~NaLLK 142 (824)
T PRK07764 75 CDSCVALAPGGPGSLDVTEIDAASHGGVDDARELRE----------RAFF--APAESRYKIFIIDEAHMVTPQGFNALLK 142 (824)
T ss_pred cHHHHHHHcCCCCCCcEEEecccccCCHHHHHHHHH----------HHHh--chhcCCceEEEEechhhcCHHHHHHHHH
Confidence 122344432 111110 0000 00000000 01122233456788999
Q ss_pred HHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCC
Q 006411 528 EMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPS 569 (646)
Q Consensus 528 eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd 569 (646)
.|+.... .+++|++|+.++.|-+.|+.|+ .+|.|..++
T Consensus 143 ~LEEpP~---~~~fIl~tt~~~kLl~TIrSRc-~~v~F~~l~ 180 (824)
T PRK07764 143 IVEEPPE---HLKFIFATTEPDKVIGTIRSRT-HHYPFRLVP 180 (824)
T ss_pred HHhCCCC---CeEEEEEeCChhhhhHHHHhhe-eEEEeeCCC
Confidence 9988644 6788888899999999998887 456776664
|
|
| >PRK12422 chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00091 Score=74.69 Aligned_cols=198 Identities=15% Similarity=0.247 Sum_probs=99.5
Q ss_pred CCCCccccccc-ChH--HHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhh----------
Q 006411 404 RDPHVRWDDIA-GLE--HAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASC---------- 470 (646)
Q Consensus 404 ~~p~VsfdDIg-Gle--~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~---------- 470 (646)
..|..||++.+ |-. .+...++++...|-.. .+.+...++|||||+.++..+++++...+..
T Consensus 104 l~~~~tFdnFv~g~~N~~a~~~a~~~a~~~~~~------~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~ 177 (445)
T PRK12422 104 LDPLMTFANFLVTPENDLPHRILQEFTKVSEQG------KGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRS 177 (445)
T ss_pred CCccccccceeeCCcHHHHHHHHHHHHhccccc------cCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeH
Confidence 46788999875 422 2334555544332111 1123467999999955555555555443322
Q ss_pred -----------------------cCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHH
Q 006411 471 -----------------------RQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLI 527 (646)
Q Consensus 471 -----------------------~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~ 527 (646)
..+.+|+||||+.+.. +. . ...+|..
T Consensus 178 ~~f~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~~---------------------k~-------~---~qeelf~ 226 (445)
T PRK12422 178 ELFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSG---------------------KG-------A---TQEEFFH 226 (445)
T ss_pred HHHHHHHHHHHhcchHHHHHHHcccCCEEEEcchhhhcC---------------------Ch-------h---hHHHHHH
Confidence 2355777777776643 11 0 1122333
Q ss_pred HHcCCCCCCCcEEEEEecCCCC---cCCHHHHhccc--cEEEeCCCCC--------------C--CcHHHHHHHHHHHhh
Q 006411 528 EMEGFDSGSEQILLVGATNRPQ---ELDEAARRRLT--KRLYIPLPSS--------------G--YSGSDMKNLVKEASM 586 (646)
Q Consensus 528 eLDGl~~~~~~VlVIaATNrPd---~LDpALlRRFD--r~I~IplPd~--------------G--ySGADL~~Lc~eAa~ 586 (646)
.++.+.. ....+||.+++.|. .+++.|++||. ..+.++.|+. | ++..-+..|.....
T Consensus 227 l~N~l~~-~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~- 304 (445)
T PRK12422 227 TFNSLHT-EGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALS- 304 (445)
T ss_pred HHHHHHH-CCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcC-
Confidence 3332222 12344444444454 56789999996 6777888875 2 22222222222221
Q ss_pred hHHHHH---HHhchhhhhhcccCCCCccHHHHHHHHhhc---CC--CCCHHHHHHHHHHHHHhC
Q 006411 587 GPLREA---LRQGIEITRLQKEDMQPVTLQDFENALPQV---RA--SVSLNELGIYEEWNKQFG 642 (646)
Q Consensus 587 ~Airr~---l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kv---rP--Svs~~dl~~ye~w~k~fg 642 (646)
.-+++. +...............++++++..++|..+ .+ .++.+. ..+.|.+.||
T Consensus 305 ~dir~L~g~l~~l~~~~a~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~t~~~--I~~~Va~~~~ 366 (445)
T PRK12422 305 SNVKSLLHALTLLAKRVAYKKLSHQLLYVDDIKALLHDVLEAAESVRLTPSK--IIRAVAQYYG 366 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhhcccCCCCCHHH--HHHHHHHHhC
Confidence 111111 111000001111233578999999999875 22 244443 4567777776
|
|
| >PRK05896 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00018 Score=82.77 Aligned_cols=142 Identities=15% Similarity=0.184 Sum_probs=84.3
Q ss_pred ccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhh-----------
Q 006411 402 MDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASC----------- 470 (646)
Q Consensus 402 ~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~----------- 470 (646)
..+..+-+|++|+|.+.+++.|...+.. +..+.++||+|||+.+.....+.+-....+
T Consensus 7 ~~KyRP~~F~dIIGQe~iv~~L~~aI~~-----------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~ 75 (605)
T PRK05896 7 YRKYRPHNFKQIIGQELIKKILVNAILN-----------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNS 75 (605)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcc
Confidence 3456788999999999999999887643 234578999999944444444333332221
Q ss_pred ----------cCCeeeeehh--------hhHHhhhcccccccchhhhhhhhhhccccCC---CCCchhhHHHHHHHHHHH
Q 006411 471 ----------RQPAVIFVDE--------IDSLLSQMLPYMHVHHIKLFCLKRFYFQRKS---DGEHESSRRLKTQFLIEM 529 (646)
Q Consensus 471 ----------~aPsIIFIDE--------IDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s---~~~~e~s~rilneLL~eL 529 (646)
..|.++.||. |..+.. ..+...+.+.++- +.-+..+....+.||..|
T Consensus 76 C~sCr~i~~~~h~DiieIdaas~igVd~IReIi~------------~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtL 143 (605)
T PRK05896 76 CSVCESINTNQSVDIVELDAASNNGVDEIRNIID------------NINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTL 143 (605)
T ss_pred cHHHHHHHcCCCCceEEeccccccCHHHHHHHHH------------HHHhchhhCCcEEEEEechHhCCHHHHHHHHHHH
Confidence 1244555442 333322 0000001111100 011111233567889888
Q ss_pred cCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 530 EGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 530 DGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
+... ..+++|++|+.+..|.+++++|+. ++.|+.|+.
T Consensus 144 EEPp---~~tvfIL~Tt~~~KLl~TI~SRcq-~ieF~~Ls~ 180 (605)
T PRK05896 144 EEPP---KHVVFIFATTEFQKIPLTIISRCQ-RYNFKKLNN 180 (605)
T ss_pred HhCC---CcEEEEEECCChHhhhHHHHhhhh-hcccCCCCH
Confidence 8754 367888888889999999999986 568877754
|
|
| >PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00027 Score=78.93 Aligned_cols=31 Identities=29% Similarity=0.452 Sum_probs=26.0
Q ss_pred CCcEEEEEecCCCC----cCCHHHHhccccEEEeCC
Q 006411 536 SEQILLVGATNRPQ----ELDEAARRRLTKRLYIPL 567 (646)
Q Consensus 536 ~~~VlVIaATNrPd----~LDpALlRRFDr~I~Ipl 567 (646)
..++.||||+|..+ .||.|++|||.- |++.+
T Consensus 323 P~Nl~IIgTMNt~Drs~~~lD~AlrRRF~f-i~i~p 357 (459)
T PRK11331 323 PENVYIIGLMNTADRSLAVVDYALRRRFSF-IDIEP 357 (459)
T ss_pred CCCeEEEEecCccccchhhccHHHHhhhhe-EEecC
Confidence 46899999999999 899999999954 55554
|
|
| >PRK14954 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00081 Score=77.96 Aligned_cols=140 Identities=18% Similarity=0.205 Sum_probs=81.4
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhc-----------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCR----------- 471 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~----------- 471 (646)
.+..+.+|++|+|.+.+++.|+..+.. +..+.++||+||| |-+.+.+-.+|..+-.+
T Consensus 8 ~kyRP~~f~eivGQe~i~~~L~~~i~~-----------~ri~ha~Lf~Gp~-GvGKttlA~~lAk~L~c~~~~~~~~~~~ 75 (620)
T PRK14954 8 RKYRPSKFADITAQEHITHTIQNSLRM-----------DRVGHGYIFSGLR-GVGKTTAARVFAKAVNCQRMIDDPVYLQ 75 (620)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeeEEEECCC-CCCHHHHHHHHHHHhCCCCcCCcccccc
Confidence 456788999999999999999886643 2345789999999 44444444444433211
Q ss_pred ---CC----------------eeeee--------hhhhHHhhhcccccccchhhhhhhhhhccccCC---CCCchhhHHH
Q 006411 472 ---QP----------------AVIFV--------DEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKS---DGEHESSRRL 521 (646)
Q Consensus 472 ---aP----------------sIIFI--------DEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s---~~~~e~s~ri 521 (646)
.| .++.| |+|..+... ...+.+.+.++- +.-+..+..-
T Consensus 76 ~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~------------~~~~P~~~~~KVvIIdEad~Lt~~a 143 (620)
T PRK14954 76 EVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLREN------------VRYGPQKGRYRVYIIDEVHMLSTAA 143 (620)
T ss_pred ccCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHH------------HHhhhhcCCCEEEEEeChhhcCHHH
Confidence 12 23333 334333320 000011111110 1112223344
Q ss_pred HHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 522 KTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 522 lneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
.+.||..|+.... .+++|++|+.+..|-+.+++|. ..++|..++.
T Consensus 144 ~naLLK~LEePp~---~tv~IL~t~~~~kLl~TI~SRc-~~vef~~l~~ 188 (620)
T PRK14954 144 FNAFLKTLEEPPP---HAIFIFATTELHKIPATIASRC-QRFNFKRIPL 188 (620)
T ss_pred HHHHHHHHhCCCC---CeEEEEEeCChhhhhHHHHhhc-eEEecCCCCH
Confidence 6788888877543 4666666777899999988887 4677877754
|
|
| >PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00039 Score=82.22 Aligned_cols=132 Identities=18% Similarity=0.196 Sum_probs=83.1
Q ss_pred cccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHH-----------------------------
Q 006411 412 DIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVR----------------------------- 462 (646)
Q Consensus 412 DIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr----------------------------- 462 (646)
.|+|.+++++.|.+.|..-... + ..-.+|...+||+|||+.++....+
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~g--l-~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG 535 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAG--L-GHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIG 535 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhcc--c-cCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcC
Confidence 4789999999999988753210 0 0012344569999999222221111
Q ss_pred ------------HHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHc
Q 006411 463 ------------ALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEME 530 (646)
Q Consensus 463 ------------~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLD 530 (646)
.+.+..+....|||||||||.+-+ .+.+.||..||
T Consensus 536 ~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~---------------------------------~v~~~LLq~ld 582 (758)
T PRK11034 536 APPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP---------------------------------DVFNLLLQVMD 582 (758)
T ss_pred CCCCcccccccchHHHHHHhCCCcEEEeccHhhhhH---------------------------------HHHHHHHHHHh
Confidence 122223444558999999998744 26677888777
Q ss_pred C-CCC-------CCCcEEEEEecCCC-------------------------CcCCHHHHhccccEEEeCCCCCCCcHHHH
Q 006411 531 G-FDS-------GSEQILLVGATNRP-------------------------QELDEAARRRLTKRLYIPLPSSGYSGSDM 577 (646)
Q Consensus 531 G-l~~-------~~~~VlVIaATNrP-------------------------d~LDpALlRRFDr~I~IplPd~GySGADL 577 (646)
. .-. .-.+++||+|||.- ..+.|.++.|+|.+|.|++.+ ..++
T Consensus 583 ~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~----~~~l 658 (758)
T PRK11034 583 NGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLS----TDVI 658 (758)
T ss_pred cCeeecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCC----HHHH
Confidence 3 211 11478999999932 236688888999999988754 4566
Q ss_pred HHHHHH
Q 006411 578 KNLVKE 583 (646)
Q Consensus 578 ~~Lc~e 583 (646)
..++..
T Consensus 659 ~~I~~~ 664 (758)
T PRK11034 659 HQVVDK 664 (758)
T ss_pred HHHHHH
Confidence 666543
|
|
| >PRK14948 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0004 Score=80.50 Aligned_cols=143 Identities=20% Similarity=0.216 Sum_probs=80.3
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhc-----------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCR----------- 471 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~----------- 471 (646)
.++.+.+|++|+|.+.+++.|..++.. +....++||||||+.++...++.+-...-+.
T Consensus 8 ~kyRP~~f~~liGq~~i~~~L~~~l~~-----------~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg 76 (620)
T PRK14948 8 HKYRPQRFDELVGQEAIATTLKNALIS-----------NRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCG 76 (620)
T ss_pred HHhCCCcHhhccChHHHHHHHHHHHHc-----------CCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCc
Confidence 345678999999999999999988865 1124579999999444444444333332221
Q ss_pred ------------CCeeeee--------hhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcC
Q 006411 472 ------------QPAVIFV--------DEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEG 531 (646)
Q Consensus 472 ------------aPsIIFI--------DEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDG 531 (646)
.|.++.+ |+|..+... +...++.+..+...- +.-+.-.....+.||..|+.
T Consensus 77 ~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~------a~~~p~~~~~KViII---DEad~Lt~~a~naLLK~LEe 147 (620)
T PRK14948 77 KCELCRAIAAGNALDVIEIDAASNTGVDNIRELIER------AQFAPVQARWKVYVI---DECHMLSTAAFNALLKTLEE 147 (620)
T ss_pred ccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHH------HhhChhcCCceEEEE---ECccccCHHHHHHHHHHHhc
Confidence 1223222 222222210 000000010000000 01111223467889999986
Q ss_pred CCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCC
Q 006411 532 FDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPS 569 (646)
Q Consensus 532 l~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd 569 (646)
.. ..+++|++|+.++.|-+.|++|+. ++.|+.++
T Consensus 148 Pp---~~tvfIL~t~~~~~llpTIrSRc~-~~~f~~l~ 181 (620)
T PRK14948 148 PP---PRVVFVLATTDPQRVLPTIISRCQ-RFDFRRIP 181 (620)
T ss_pred CC---cCeEEEEEeCChhhhhHHHHhhee-EEEecCCC
Confidence 43 467777888889999999988884 46776664
|
|
| >PTZ00112 origin recognition complex 1 protein; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.001 Score=79.20 Aligned_cols=79 Identities=23% Similarity=0.358 Sum_probs=49.2
Q ss_pred HHHHHHHHHhh--hcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCCCC
Q 006411 459 KLVRALFGVAS--CRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGS 536 (646)
Q Consensus 459 k~Vr~lF~~Ar--~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~~ 536 (646)
..+..+|.... .....||+|||||.|.. .. +.++-.|+.... . ..
T Consensus 854 evLerLF~~L~k~~r~v~IIILDEID~L~k---------------------K~---------QDVLYnLFR~~~-~--s~ 900 (1164)
T PTZ00112 854 KILDRLFNQNKKDNRNVSILIIDEIDYLIT---------------------KT---------QKVLFTLFDWPT-K--IN 900 (1164)
T ss_pred HHHHHHHhhhhcccccceEEEeehHhhhCc---------------------cH---------HHHHHHHHHHhh-c--cC
Confidence 34555565542 23456899999998865 11 234444444322 2 23
Q ss_pred CcEEEEEecCC---CCcCCHHHHhcccc-EEEeCCCCC
Q 006411 537 EQILLVGATNR---PQELDEAARRRLTK-RLYIPLPSS 570 (646)
Q Consensus 537 ~~VlVIaATNr---Pd~LDpALlRRFDr-~I~IplPd~ 570 (646)
.+|+|||+||. |+.|+|.++.||.. +|.|++++.
T Consensus 901 SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTa 938 (1164)
T PTZ00112 901 SKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKG 938 (1164)
T ss_pred CeEEEEEecCchhcchhhhhhhhhccccccccCCCCCH
Confidence 57999999996 67788988888764 366666553
|
|
| >PRK14952 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0004 Score=79.98 Aligned_cols=144 Identities=17% Similarity=0.170 Sum_probs=86.1
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhc-----------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCR----------- 471 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~----------- 471 (646)
.++.+-+|+||+|.+.+++.|+.++.. +..+..+||||||+.++....+.+-....+.
T Consensus 5 ~kyRP~~f~eivGq~~i~~~L~~~i~~-----------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 73 (584)
T PRK14952 5 RKYRPATFAEVVGQEHVTEPLSSALDA-----------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVC 73 (584)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCccccc
Confidence 456678999999999999999988754 2345789999999444444444333322211
Q ss_pred ------------CCeeeeehh--------hhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcC
Q 006411 472 ------------QPAVIFVDE--------IDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEG 531 (646)
Q Consensus 472 ------------aPsIIFIDE--------IDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDG 531 (646)
.+.++.||- |..|.. .+...++.+..+..-- +.-|.-+....+.||..|+.
T Consensus 74 ~~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~------~~~~~P~~~~~KVvII---DEah~Lt~~A~NALLK~LEE 144 (584)
T PRK14952 74 ESCVALAPNGPGSIDVVELDAASHGGVDDTRELRD------RAFYAPAQSRYRIFIV---DEAHMVTTAGFNALLKIVEE 144 (584)
T ss_pred HHHHHhhcccCCCceEEEeccccccCHHHHHHHHH------HHHhhhhcCCceEEEE---ECCCcCCHHHHHHHHHHHhc
Confidence 133555443 222211 0000011111111110 11233344578889998887
Q ss_pred CCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 532 FDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 532 l~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
.. ..+++|++|+.+..|-++|++|. .++.|..++.
T Consensus 145 pp---~~~~fIL~tte~~kll~TI~SRc-~~~~F~~l~~ 179 (584)
T PRK14952 145 PP---EHLIFIFATTEPEKVLPTIRSRT-HHYPFRLLPP 179 (584)
T ss_pred CC---CCeEEEEEeCChHhhHHHHHHhc-eEEEeeCCCH
Confidence 54 47888888899999999999986 5677777653
|
|
| >PRK06647 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0012 Score=75.84 Aligned_cols=141 Identities=15% Similarity=0.163 Sum_probs=85.0
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhc-----------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCR----------- 471 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~----------- 471 (646)
.+..+-+|+||+|.+.+++.|+..+.. +..+..+||||||+.+....++.+-+..-+.
T Consensus 8 ~kyRP~~f~diiGqe~iv~~L~~~i~~-----------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C 76 (563)
T PRK06647 8 TKRRPRDFNSLEGQDFVVETLKHSIES-----------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGEC 76 (563)
T ss_pred HHhCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccc
Confidence 456788999999999999999888854 2345789999999555555554444333221
Q ss_pred ----------CCeeeeehh--------hhHHhhhcccccccchhhhhhhhhhccccC---CCCCchhhHHHHHHHHHHHc
Q 006411 472 ----------QPAVIFVDE--------IDSLLSQMLPYMHVHHIKLFCLKRFYFQRK---SDGEHESSRRLKTQFLIEME 530 (646)
Q Consensus 472 ----------aPsIIFIDE--------IDsL~~k~~~~~~~~~~~~~~~kr~~~~R~---s~~~~e~s~rilneLL~eLD 530 (646)
.|.++.||. |-.+... . ....+.+.+. -+.-+..+....+.||..|+
T Consensus 77 ~~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~------~------~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LE 144 (563)
T PRK06647 77 SSCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEE------I------MFPPASSRYRVYIIDEVHMLSNSAFNALLKTIE 144 (563)
T ss_pred hHHHHHHcCCCCCeEEecCcccCCHHHHHHHHHH------H------HhchhcCCCEEEEEEChhhcCHHHHHHHHHhhc
Confidence 133454442 2122110 0 0000001110 01122334456788888887
Q ss_pred CCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 531 GFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 531 Gl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
.. ...+++|++|+.++.|.+++++|+. .+.|.+|+.
T Consensus 145 ep---p~~~vfI~~tte~~kL~~tI~SRc~-~~~f~~l~~ 180 (563)
T PRK06647 145 EP---PPYIVFIFATTEVHKLPATIKSRCQ-HFNFRLLSL 180 (563)
T ss_pred cC---CCCEEEEEecCChHHhHHHHHHhce-EEEecCCCH
Confidence 53 3467888888889999999999986 467777643
|
|
| >PRK09111 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00056 Score=78.98 Aligned_cols=144 Identities=15% Similarity=0.139 Sum_probs=81.8
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhc-----------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCR----------- 471 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~----------- 471 (646)
.++.+-+|+||+|.+.+++.|...+.. +..+.++||||||+.++....+.+-+...+.
T Consensus 16 ~KyRP~~f~dliGq~~~v~~L~~~~~~-----------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~ 84 (598)
T PRK09111 16 RKYRPQTFDDLIGQEAMVRTLTNAFET-----------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID 84 (598)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc
Confidence 345678999999999999999887753 3456899999999333333333332222111
Q ss_pred ---------------CCeeeee--------hhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHH
Q 006411 472 ---------------QPAVIFV--------DEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIE 528 (646)
Q Consensus 472 ---------------aPsIIFI--------DEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~e 528 (646)
.|.++.| |+|-.|... +...+++...+..-- +.-+..+....+.||..
T Consensus 85 ~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~------~~~~P~~a~~KVvII---DEad~Ls~~a~naLLKt 155 (598)
T PRK09111 85 LCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIES------VRYRPVSARYKVYII---DEVHMLSTAAFNALLKT 155 (598)
T ss_pred cCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHH------HHhchhcCCcEEEEE---EChHhCCHHHHHHHHHH
Confidence 1223332 233333220 000011110000000 01122223457888888
Q ss_pred HcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 529 MEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 529 LDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
|+.... .+++|++|+.++.|-+.+++|+ .++.|..|+.
T Consensus 156 LEePp~---~~~fIl~tte~~kll~tI~SRc-q~~~f~~l~~ 193 (598)
T PRK09111 156 LEEPPP---HVKFIFATTEIRKVPVTVLSRC-QRFDLRRIEA 193 (598)
T ss_pred HHhCCC---CeEEEEEeCChhhhhHHHHhhe-eEEEecCCCH
Confidence 877543 5777778888888989988888 4678888764
|
|
| >PRK14971 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00098 Score=77.24 Aligned_cols=140 Identities=16% Similarity=0.128 Sum_probs=83.5
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhh------------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASC------------ 470 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~------------ 470 (646)
.++.+.+|+||+|.+.+++.|...+.. +..+..+|||||++.+... +..+|..+-.
T Consensus 9 ~kyRP~~f~~viGq~~~~~~L~~~i~~-----------~~l~hayLf~Gp~G~GKtt-~A~~lAk~l~c~~~~~~~~~Cg 76 (614)
T PRK14971 9 RKYRPSTFESVVGQEALTTTLKNAIAT-----------NKLAHAYLFCGPRGVGKTT-CARIFAKTINCQNLTADGEACN 76 (614)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCCHHH-HHHHHHHHhCCCCCCCCCCCCC
Confidence 456679999999999999999888753 2346789999999333333 5555554321
Q ss_pred -----------cCCeeeeeh--------hhhHHhhhcccccccchhhhhhhhhhccccCC---CCCchhhHHHHHHHHHH
Q 006411 471 -----------RQPAVIFVD--------EIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKS---DGEHESSRRLKTQFLIE 528 (646)
Q Consensus 471 -----------~aPsIIFID--------EIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s---~~~~e~s~rilneLL~e 528 (646)
..+.++.|| +|..+... .....+.+.++- +.-+.-+....+.||..
T Consensus 77 ~C~sC~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~------------~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~ 144 (614)
T PRK14971 77 ECESCVAFNEQRSYNIHELDAASNNSVDDIRNLIEQ------------VRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKT 144 (614)
T ss_pred cchHHHHHhcCCCCceEEecccccCCHHHHHHHHHH------------HhhCcccCCcEEEEEECcccCCHHHHHHHHHH
Confidence 124444443 33333210 000001111110 11122234467889988
Q ss_pred HcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 529 MEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 529 LDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
|+.... .+++|++|+.+..|-++|++|+.. +.|..++.
T Consensus 145 LEepp~---~tifIL~tt~~~kIl~tI~SRc~i-v~f~~ls~ 182 (614)
T PRK14971 145 LEEPPS---YAIFILATTEKHKILPTILSRCQI-FDFNRIQV 182 (614)
T ss_pred HhCCCC---CeEEEEEeCCchhchHHHHhhhhe-eecCCCCH
Confidence 887643 456667777778999999998744 67777654
|
|
| >PRK05564 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00067 Score=71.60 Aligned_cols=141 Identities=13% Similarity=0.118 Sum_probs=80.8
Q ss_pred ccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhh-----cCCeeeeehhhhH
Q 006411 409 RWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASC-----RQPAVIFVDEIDS 483 (646)
Q Consensus 409 sfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~-----~aPsIIFIDEIDs 483 (646)
+|+||.|.+.+++.|...+.. +..+..+|||||++-+....++.+-....+ ..|.+..+.-.|.
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~-----------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~ 70 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK-----------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINK 70 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc-----------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccC
Confidence 699999999999999888733 345678999999944444444444333222 2345533322100
Q ss_pred Hhhhcccccccchhhhhhh----hhhccccCC---CCCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHH
Q 006411 484 LLSQMLPYMHVHHIKLFCL----KRFYFQRKS---DGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAAR 556 (646)
Q Consensus 484 L~~k~~~~~~~~~~~~~~~----kr~~~~R~s---~~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALl 556 (646)
......++...|. ..+.+.++- ...+..+....|.||..|+... +++++|.+|+.|+.|-|.++
T Consensus 71 ------~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp---~~t~~il~~~~~~~ll~TI~ 141 (313)
T PRK05564 71 ------KSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPP---KGVFIILLCENLEQILDTIK 141 (313)
T ss_pred ------CCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcCCC---CCeEEEEEeCChHhCcHHHH
Confidence 0000111111111 111111110 1112223456788998888643 46677777788999999999
Q ss_pred hccccEEEeCCCCC
Q 006411 557 RRLTKRLYIPLPSS 570 (646)
Q Consensus 557 RRFDr~I~IplPd~ 570 (646)
+|.. .++|+.|+.
T Consensus 142 SRc~-~~~~~~~~~ 154 (313)
T PRK05564 142 SRCQ-IYKLNRLSK 154 (313)
T ss_pred hhce-eeeCCCcCH
Confidence 9984 778887754
|
|
| >TIGR00678 holB DNA polymerase III, delta' subunit | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.001 Score=64.67 Aligned_cols=55 Identities=20% Similarity=0.196 Sum_probs=40.0
Q ss_pred HHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCCCCcHHHHHHHHHH
Q 006411 521 LKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSSGYSGSDMKNLVKE 583 (646)
Q Consensus 521 ilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~GySGADL~~Lc~e 583 (646)
..+.||..|+... +.+++|++||.+..|.+++++|+. .+.+++|+. .++...+..
T Consensus 112 ~~~~Ll~~le~~~---~~~~~il~~~~~~~l~~~i~sr~~-~~~~~~~~~----~~~~~~l~~ 166 (188)
T TIGR00678 112 AANALLKTLEEPP---PNTLFILITPSPEKLLPTIRSRCQ-VLPFPPLSE----EALLQWLIR 166 (188)
T ss_pred HHHHHHHHhcCCC---CCeEEEEEECChHhChHHHHhhcE-EeeCCCCCH----HHHHHHHHH
Confidence 4567888887643 356777778888999999999984 778887753 666655544
|
At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. |
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0012 Score=66.93 Aligned_cols=126 Identities=12% Similarity=0.148 Sum_probs=72.2
Q ss_pred CCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhh--------------
Q 006411 404 RDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVAS-------------- 469 (646)
Q Consensus 404 ~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar-------------- 469 (646)
..+..+|++++|-+... +...+.. .+.. .....++|||||+.++...++++-..+.
T Consensus 9 ~~~~~~fd~f~~~~~~~--~~~~~~~------~~~~--~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~ 78 (229)
T PRK06893 9 QIDDETLDNFYADNNLL--LLDSLRK------NFID--LQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS 78 (229)
T ss_pred CCCcccccccccCChHH--HHHHHHH------Hhhc--cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh
Confidence 45678889888644321 1111111 1111 1224689999996666666666544321
Q ss_pred ----------hcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCCCCCcE
Q 006411 470 ----------CRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQI 539 (646)
Q Consensus 470 ----------~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~~~~V 539 (646)
..+..+|+||||+.+.. .+ . .... |...++........+
T Consensus 79 ~~~~~~~~~~~~~~dlLilDDi~~~~~---------------------~~------~-~~~~---l~~l~n~~~~~~~~i 127 (229)
T PRK06893 79 QYFSPAVLENLEQQDLVCLDDLQAVIG---------------------NE------E-WELA---IFDLFNRIKEQGKTL 127 (229)
T ss_pred hhhhHHHHhhcccCCEEEEeChhhhcC---------------------Ch------H-HHHH---HHHHHHHHHHcCCcE
Confidence 11456899999998864 11 1 1122 333333333222346
Q ss_pred EEEEecCCCCcCC---HHHHhcc--ccEEEeCCCCC
Q 006411 540 LLVGATNRPQELD---EAARRRL--TKRLYIPLPSS 570 (646)
Q Consensus 540 lVIaATNrPd~LD---pALlRRF--Dr~I~IplPd~ 570 (646)
+|++++..|..++ +.+.+|+ ...+.++.|+.
T Consensus 128 llits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~ 163 (229)
T PRK06893 128 LLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTD 163 (229)
T ss_pred EEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCH
Confidence 6677777788776 8888865 57888999986
|
|
| >TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0018 Score=76.30 Aligned_cols=82 Identities=16% Similarity=0.188 Sum_probs=57.7
Q ss_pred hhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCC---C-----CCCcE
Q 006411 468 ASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFD---S-----GSEQI 539 (646)
Q Consensus 468 Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~---~-----~~~~V 539 (646)
.+....+||||||||.+-+ .+.+.||..||.-. . .-.++
T Consensus 549 ~~~~p~~VvllDEieka~~---------------------------------~~~~~Ll~~ld~g~~~d~~g~~vd~~~~ 595 (731)
T TIGR02639 549 VRKHPHCVLLLDEIEKAHP---------------------------------DIYNILLQVMDYATLTDNNGRKADFRNV 595 (731)
T ss_pred HHhCCCeEEEEechhhcCH---------------------------------HHHHHHHHhhccCeeecCCCcccCCCCC
Confidence 3445567999999996643 25677777777431 0 12468
Q ss_pred EEEEecCCCC-------------------------cCCHHHHhccccEEEeCCCCCCCcHHHHHHHHHHHhh
Q 006411 540 LLVGATNRPQ-------------------------ELDEAARRRLTKRLYIPLPSSGYSGSDMKNLVKEASM 586 (646)
Q Consensus 540 lVIaATNrPd-------------------------~LDpALlRRFDr~I~IplPd~GySGADL~~Lc~eAa~ 586 (646)
+||+|||... .+.|.++.|||..|.|.+ ++..++..+++....
T Consensus 596 iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~p----Ls~e~l~~Iv~~~L~ 663 (731)
T TIGR02639 596 ILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNP----LSEEVLEKIVQKFVD 663 (731)
T ss_pred EEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCC----CCHHHHHHHHHHHHH
Confidence 8999998742 256778889999888877 466999999976654
|
|
| >PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0012 Score=77.75 Aligned_cols=128 Identities=24% Similarity=0.326 Sum_probs=78.4
Q ss_pred CCCCcccccccChHHHHH---HHHHHHHhhccCccccccCCCCCccccccCCCCchHHHH--------------------
Q 006411 404 RDPHVRWDDIAGLEHAKK---CVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKL-------------------- 460 (646)
Q Consensus 404 ~~p~VsfdDIgGle~~K~---~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~-------------------- 460 (646)
+..+-+|+|++|.+++.. .|+..+.. . ....+||||||+.++...
T Consensus 21 k~RP~tldd~vGQe~ii~~~~~L~~~i~~-----------~-~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~ 88 (725)
T PRK13341 21 RLRPRTLEEFVGQDHILGEGRLLRRAIKA-----------D-RVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA 88 (725)
T ss_pred hcCCCcHHHhcCcHHHhhhhHHHHHHHhc-----------C-CCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh
Confidence 344688999999999875 45554432 1 124789999993333322
Q ss_pred ----HHHHHHHhhh-----cCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcC
Q 006411 461 ----VRALFGVASC-----RQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEG 531 (646)
Q Consensus 461 ----Vr~lF~~Ar~-----~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDG 531 (646)
++.+++.+.. ....||||||||.+.. ...+.|+..++.
T Consensus 89 ~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~---------------------------------~qQdaLL~~lE~ 135 (725)
T PRK13341 89 GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNK---------------------------------AQQDALLPWVEN 135 (725)
T ss_pred hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH---------------------------------HHHHHHHHHhcC
Confidence 3333333321 2456899999998743 012334444432
Q ss_pred CCCCCCcEEEEEecCC-C-CcCCHHHHhccccEEEeCCCCCCCcHHHHHHHHHHHhh
Q 006411 532 FDSGSEQILLVGATNR-P-QELDEAARRRLTKRLYIPLPSSGYSGSDMKNLVKEASM 586 (646)
Q Consensus 532 l~~~~~~VlVIaATNr-P-d~LDpALlRRFDr~I~IplPd~GySGADL~~Lc~eAa~ 586 (646)
..|++|++|.. | ..+++++++|. ..+.++.++. .|+..+++.++.
T Consensus 136 -----g~IiLI~aTTenp~~~l~~aL~SR~-~v~~l~pLs~----edi~~IL~~~l~ 182 (725)
T PRK13341 136 -----GTITLIGATTENPYFEVNKALVSRS-RLFRLKSLSD----EDLHQLLKRALQ 182 (725)
T ss_pred -----ceEEEEEecCCChHhhhhhHhhccc-cceecCCCCH----HHHHHHHHHHHH
Confidence 35777776643 3 46899999986 4577887764 677777766553
|
|
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0044 Score=63.18 Aligned_cols=123 Identities=12% Similarity=0.078 Sum_probs=71.4
Q ss_pred CCCCccccccc-C-hHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhcC---------
Q 006411 404 RDPHVRWDDIA-G-LEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCRQ--------- 472 (646)
Q Consensus 404 ~~p~VsfdDIg-G-le~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~a--------- 472 (646)
-.+..+|++.. | -..+...|+..+..+ ....++|||||+.++...++.+...+....
T Consensus 15 ~~~~~~fd~f~~~~n~~a~~~l~~~~~~~------------~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~ 82 (235)
T PRK08084 15 LPDDETFASFYPGDNDSLLAALQNALRQE------------HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLD 82 (235)
T ss_pred CCCcCCccccccCccHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHH
Confidence 45567788766 4 444556665544221 124799999996666667766665443211
Q ss_pred ---------------CeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCCCCC
Q 006411 473 ---------------PAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSE 537 (646)
Q Consensus 473 ---------------PsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~~~ 537 (646)
-.+|+||||+.+.. + .. ....+-.+++.+ .. .+
T Consensus 83 ~~~~~~~~~~~~~~~~dlliiDdi~~~~~---------------------~------~~-~~~~lf~l~n~~---~e-~g 130 (235)
T PRK08084 83 KRAWFVPEVLEGMEQLSLVCIDNIECIAG---------------------D------EL-WEMAIFDLYNRI---LE-SG 130 (235)
T ss_pred HHhhhhHHHHHHhhhCCEEEEeChhhhcC---------------------C------HH-HHHHHHHHHHHH---HH-cC
Confidence 23678888887743 1 11 112233333332 11 12
Q ss_pred c-EEEEEecCCCCc---CCHHHHhccc--cEEEeCCCCC
Q 006411 538 Q-ILLVGATNRPQE---LDEAARRRLT--KRLYIPLPSS 570 (646)
Q Consensus 538 ~-VlVIaATNrPd~---LDpALlRRFD--r~I~IplPd~ 570 (646)
+ -+|+.+++.|.. +.|.|++|+. ..+.+..|+.
T Consensus 131 ~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~ 169 (235)
T PRK08084 131 RTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSD 169 (235)
T ss_pred CCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCH
Confidence 3 355555555555 6899999996 7888888874
|
|
| >CHL00081 chlI Mg-protoporyphyrin IX chelatase | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0013 Score=71.61 Aligned_cols=54 Identities=24% Similarity=0.296 Sum_probs=44.2
Q ss_pred CCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhh
Q 006411 405 DPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASC 470 (646)
Q Consensus 405 ~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~ 470 (646)
.+...|++|+|.+++|..|.-.+..|- ..||||+||++.++...+|.+.+.+..
T Consensus 11 ~~~~pf~~ivGq~~~k~al~~~~~~p~------------~~~vli~G~~GtGKs~~ar~~~~~l~~ 64 (350)
T CHL00081 11 RPVFPFTAIVGQEEMKLALILNVIDPK------------IGGVMIMGDRGTGKSTTIRALVDLLPE 64 (350)
T ss_pred CCCCCHHHHhChHHHHHHHHHhccCCC------------CCeEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 556789999999999999877766631 368999999988888888988887754
|
|
| >COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0013 Score=76.57 Aligned_cols=118 Identities=23% Similarity=0.365 Sum_probs=75.4
Q ss_pred cccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCC--------------------------------------
Q 006411 412 DIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP-------------------------------------- 453 (646)
Q Consensus 412 DIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPP-------------------------------------- 453 (646)
|=-||+++|+.|.|++.--...+.+ ...=++|+|||
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~~------kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRR 397 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKKL------KGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRR 397 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhccC------CCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccc
Confidence 4578999999999988763322221 11236789999
Q ss_pred --CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcC
Q 006411 454 --IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEG 531 (646)
Q Consensus 454 --vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDG 531 (646)
+|...-.|=.-...|....| ++++||||.+.. .- .++. .+.||.-||-
T Consensus 398 TYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~s---------------------s~--rGDP------aSALLEVLDP 447 (782)
T COG0466 398 TYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGS---------------------SF--RGDP------ASALLEVLDP 447 (782)
T ss_pred cccccCChHHHHHHHHhCCcCC-eEEeechhhccC---------------------CC--CCCh------HHHHHhhcCH
Confidence 33333344444566666667 777999999976 11 1222 1344544442
Q ss_pred CCC------------CCCcEEEEEecCCCCcCCHHHHhccccEEEeC
Q 006411 532 FDS------------GSEQILLVGATNRPQELDEAARRRLTKRLYIP 566 (646)
Q Consensus 532 l~~------------~~~~VlVIaATNrPd~LDpALlRRFDr~I~Ip 566 (646)
-.. .-.+|++|+|+|..+.|+..|+-|++- |+++
T Consensus 448 EQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRMEi-I~ls 493 (782)
T COG0466 448 EQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRMEV-IRLS 493 (782)
T ss_pred hhcCchhhccccCccchhheEEEeecCccccCChHHhcceee-eeec
Confidence 111 113699999999999999999988743 3443
|
|
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0027 Score=70.71 Aligned_cols=125 Identities=14% Similarity=0.295 Sum_probs=69.5
Q ss_pred cCCCCccccccc-ChHH--HHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhh---------
Q 006411 403 DRDPHVRWDDIA-GLEH--AKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASC--------- 470 (646)
Q Consensus 403 ~~~p~VsfdDIg-Gle~--~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~--------- 470 (646)
...|..+|++.+ |-.. +...+.+.+.. |. . ...++|||||+.++...++.+...+..
T Consensus 97 ~l~~~~tFdnFv~g~~n~~a~~~~~~~~~~----~~------~-~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~y 165 (440)
T PRK14088 97 PLNPDYTFENFVVGPGNSFAYHAALEVAKN----PG------R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMY 165 (440)
T ss_pred CCCCCCcccccccCCchHHHHHHHHHHHhC----cC------C-CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEE
Confidence 356789999976 5332 33333333322 11 1 245999999955555555544443221
Q ss_pred ---------------------------cCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHH
Q 006411 471 ---------------------------RQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKT 523 (646)
Q Consensus 471 ---------------------------~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~riln 523 (646)
..+.+|+|||++.+.. +. ....
T Consensus 166 i~~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~---------------------~~----------~~q~ 214 (440)
T PRK14088 166 ITSEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIG---------------------KT----------GVQT 214 (440)
T ss_pred EEHHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcC---------------------cH----------HHHH
Confidence 1466777777777654 11 1123
Q ss_pred HHHHHHcCCCCCCCcEEEEEecCCCCcC---CHHHHhccc--cEEEeCCCCC
Q 006411 524 QFLIEMEGFDSGSEQILLVGATNRPQEL---DEAARRRLT--KRLYIPLPSS 570 (646)
Q Consensus 524 eLL~eLDGl~~~~~~VlVIaATNrPd~L---DpALlRRFD--r~I~IplPd~ 570 (646)
+|+..++.+.. ....+||++.+.|..+ ++.+++||. ..+.|.+||.
T Consensus 215 elf~~~n~l~~-~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~ 265 (440)
T PRK14088 215 ELFHTFNELHD-SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDE 265 (440)
T ss_pred HHHHHHHHHHH-cCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCH
Confidence 34444444433 2245666666777764 456666884 5677888985
|
|
| >PRK13407 bchI magnesium chelatase subunit I; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0023 Score=69.13 Aligned_cols=53 Identities=17% Similarity=0.204 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHcCCC---------C-CCCcEEEEEecCCCC-cCCHHHHhccccEEEeCCCCC
Q 006411 518 SRRLKTQFLIEMEGFD---------S-GSEQILLVGATNRPQ-ELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 518 s~rilneLL~eLDGl~---------~-~~~~VlVIaATNrPd-~LDpALlRRFDr~I~IplPd~ 570 (646)
...+.+.|+.-|+.-. . ...++++|+|+|-.+ .+.++++.||...|.++.|..
T Consensus 141 ~~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~ 204 (334)
T PRK13407 141 EDHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRD 204 (334)
T ss_pred CHHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCc
Confidence 4566777787775321 0 124689999988644 599999999999999998864
|
|
| >PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00049 Score=63.30 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=19.4
Q ss_pred cEEEEEecCCCC----cCCHHHHhcc
Q 006411 538 QILLVGATNRPQ----ELDEAARRRL 559 (646)
Q Consensus 538 ~VlVIaATNrPd----~LDpALlRRF 559 (646)
++.||+|+|... .|++|+++||
T Consensus 114 ~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 114 NFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp -EEEEEEESSST--TTTTCHHHHTT-
T ss_pred ceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 489999999999 9999999998
|
The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A. |
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0016 Score=56.60 Aligned_cols=87 Identities=25% Similarity=0.306 Sum_probs=54.2
Q ss_pred CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCC
Q 006411 454 IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFD 533 (646)
Q Consensus 454 vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~ 533 (646)
.......++.+++.|+...|.||||||++.+... ... . ...............
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~---------------------~~~-----~-~~~~~~~~~~~~~~~ 112 (148)
T smart00382 60 SGSGELRLRLALALARKLKPDVLILDEITSLLDA---------------------EQE-----A-LLLLLEELRLLLLLK 112 (148)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCH---------------------HHH-----H-HHHhhhhhHHHHHHH
Confidence 3556778889999999888999999999998751 100 0 000000000011111
Q ss_pred CCCCcEEEEEecCC-CCcCCHHHHhccccEEEeCCC
Q 006411 534 SGSEQILLVGATNR-PQELDEAARRRLTKRLYIPLP 568 (646)
Q Consensus 534 ~~~~~VlVIaATNr-Pd~LDpALlRRFDr~I~IplP 568 (646)
....+.||+|||. ...++..+.+|++.++.++.+
T Consensus 113 -~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T smart00382 113 -SEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLI 147 (148)
T ss_pred -hcCCCEEEEEeCCCccCchhhhhhccceEEEecCC
Confidence 1346788899997 455555555599999998765
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PRK09112 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0036 Score=67.98 Aligned_cols=49 Identities=14% Similarity=0.155 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 518 SRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 518 s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
.....|.||..|+... .++++|..|+.|+.|.|.++.|+ .++.+++|+.
T Consensus 154 ~~~aanaLLk~LEEpp---~~~~fiLit~~~~~llptIrSRc-~~i~l~pl~~ 202 (351)
T PRK09112 154 NRNAANAILKTLEEPP---ARALFILISHSSGRLLPTIRSRC-QPISLKPLDD 202 (351)
T ss_pred CHHHHHHHHHHHhcCC---CCceEEEEECChhhccHHHHhhc-cEEEecCCCH
Confidence 3455688999998743 35666667788999999999998 6888888765
|
|
| >PRK07399 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0043 Score=66.31 Aligned_cols=134 Identities=13% Similarity=0.116 Sum_probs=80.2
Q ss_pred ccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHh---------------hhcCC
Q 006411 409 RWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVA---------------SCRQP 473 (646)
Q Consensus 409 sfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~A---------------r~~aP 473 (646)
.|++|.|.+.+++.|...+.. +..+..+|||||++.+.......+-... ....|
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-----------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hP 70 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-----------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHP 70 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-----------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCC
Confidence 589999999999999998855 2335799999999433333333322222 12246
Q ss_pred eeeeeh-------------------------------hhhHHhhhcccccccchhhhhhhhhhccccCC---CCCchhhH
Q 006411 474 AVIFVD-------------------------------EIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKS---DGEHESSR 519 (646)
Q Consensus 474 sIIFID-------------------------------EIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s---~~~~e~s~ 519 (646)
.+++++ +|..|.. ....+.+.+.++- ...+....
T Consensus 71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~------------~l~~~p~~~~~kVvII~~ae~m~~ 138 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKR------------FLSRPPLEAPRKVVVIEDAETMNE 138 (314)
T ss_pred CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHH------------HHccCcccCCceEEEEEchhhcCH
Confidence 666543 3333322 1111111111110 11122234
Q ss_pred HHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 520 RLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 520 rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
...|.||..|+... +.++|..|+.|+.|-|.+++|. ..|.|+.|+.
T Consensus 139 ~aaNaLLK~LEEPp----~~~fILi~~~~~~Ll~TI~SRc-q~i~f~~l~~ 184 (314)
T PRK07399 139 AAANALLKTLEEPG----NGTLILIAPSPESLLPTIVSRC-QIIPFYRLSD 184 (314)
T ss_pred HHHHHHHHHHhCCC----CCeEEEEECChHhCcHHHHhhc-eEEecCCCCH
Confidence 56788999998753 2356677789999999999997 5567877654
|
|
| >KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0039 Score=68.16 Aligned_cols=114 Identities=26% Similarity=0.374 Sum_probs=73.4
Q ss_pred CCCcccccccChHHHHHH---HHHHHHhhccCccccccCCCCCccccccCCC---------------------------C
Q 006411 405 DPHVRWDDIAGLEHAKKC---VMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP---------------------------I 454 (646)
Q Consensus 405 ~p~VsfdDIgGle~~K~~---L~E~V~lPL~~pelf~~~~~PprGVLLyGPP---------------------------v 454 (646)
-.+-+++|++|.+++..+ |+..|.. .+ ...++|+||| .
T Consensus 132 mRPktL~dyvGQ~hlv~q~gllrs~ieq----------~~--ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt 199 (554)
T KOG2028|consen 132 MRPKTLDDYVGQSHLVGQDGLLRSLIEQ----------NR--IPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSAT 199 (554)
T ss_pred cCcchHHHhcchhhhcCcchHHHHHHHc----------CC--CCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecc
Confidence 346788999998887644 2222211 11 2578999999 3
Q ss_pred chHHHHHHHHHHHhhhc-----CCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHH
Q 006411 455 GEGEKLVRALFGVASCR-----QPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEM 529 (646)
Q Consensus 455 Gesek~Vr~lF~~Ar~~-----aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eL 529 (646)
..+.+-+|.+|+.|+.. ...|||||||..+-. +.. ..||-
T Consensus 200 ~a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNk------------------------sQQ---------D~fLP-- 244 (554)
T KOG2028|consen 200 NAKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNK------------------------SQQ---------DTFLP-- 244 (554)
T ss_pred ccchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhh------------------------hhh---------hcccc--
Confidence 34456789999999754 578999999998743 111 11221
Q ss_pred cCCCCCCCcEEEEEecC--CCCcCCHHHHhccccEEEeCCC
Q 006411 530 EGFDSGSEQILLVGATN--RPQELDEAARRRLTKRLYIPLP 568 (646)
Q Consensus 530 DGl~~~~~~VlVIaATN--rPd~LDpALlRRFDr~I~IplP 568 (646)
-+. .+.|++||||. --..|..||+.|+-..+.-++|
T Consensus 245 -~VE--~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~ 282 (554)
T KOG2028|consen 245 -HVE--NGDITLIGATTENPSFQLNAALLSRCRVFVLEKLP 282 (554)
T ss_pred -eec--cCceEEEecccCCCccchhHHHHhccceeEeccCC
Confidence 111 34677887763 3446999999988666655665
|
|
| >TIGR00764 lon_rel lon-related putative ATP-dependent protease | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.014 Score=67.83 Aligned_cols=57 Identities=25% Similarity=0.337 Sum_probs=46.6
Q ss_pred CCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCC------------------------------
Q 006411 404 RDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP------------------------------ 453 (646)
Q Consensus 404 ~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPP------------------------------ 453 (646)
..|..-|++|.|.+++++.|+..+.. .+.++|+|||
T Consensus 11 ~~~~~~~~~viG~~~a~~~l~~a~~~--------------~~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n~~ 76 (608)
T TIGR00764 11 PVPERLIDQVIGQEEAVEIIKKAAKQ--------------KRNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPNPE 76 (608)
T ss_pred CcchhhHhhccCHHHHHHHHHHHHHc--------------CCCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeCCC
Confidence 35667789999999999998887764 2478889999
Q ss_pred -----------CchHHHHHHHHHHHhhhcCCe
Q 006411 454 -----------IGEGEKLVRALFGVASCRQPA 474 (646)
Q Consensus 454 -----------vGesek~Vr~lF~~Ar~~aPs 474 (646)
.+.+++.++..|..|++..|+
T Consensus 77 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~ 108 (608)
T TIGR00764 77 DPNMPRIVEVPAGEGREIVEDYKKKAFKQPSS 108 (608)
T ss_pred CCchHHHHHHHHhhchHHHHHHHHHhhcccch
Confidence 667788999999999888776
|
Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein. |
| >COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.015 Score=63.64 Aligned_cols=128 Identities=14% Similarity=0.307 Sum_probs=79.9
Q ss_pred ccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhc-------------------
Q 006411 411 DDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCR------------------- 471 (646)
Q Consensus 411 dDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~------------------- 471 (646)
+.+.+=++.++.|...+...+. +..|..+++||||+.++...++.+++.....
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~--------~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~ 88 (366)
T COG1474 17 EELPHREEEINQLASFLAPALR--------GERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQ 88 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhc--------CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHH
Confidence 4588888888888877655332 2234569999999444444444444433222
Q ss_pred ----------------------------------CCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchh
Q 006411 472 ----------------------------------QPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHES 517 (646)
Q Consensus 472 ----------------------------------aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~ 517 (646)
...||++||+|.|.. .. +
T Consensus 89 i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~---------------------~~---~---- 140 (366)
T COG1474 89 VLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVD---------------------KD---G---- 140 (366)
T ss_pred HHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhcc---------------------cc---c----
Confidence 344888999999976 11 1
Q ss_pred hHHHHHHHHHHHcCCCCCCCcEEEEEecCCCC---cCCHHHHhccc-cEEEeCCCCCCCcHHHHHHHHHH
Q 006411 518 SRRLKTQFLIEMEGFDSGSEQILLVGATNRPQ---ELDEAARRRLT-KRLYIPLPSSGYSGSDMKNLVKE 583 (646)
Q Consensus 518 s~rilneLL~eLDGl~~~~~~VlVIaATNrPd---~LDpALlRRFD-r~I~IplPd~GySGADL~~Lc~e 583 (646)
.++-+|+...+.. .-+|.||+.+|..+ .|||.+.++|- ..|.||+ |+..+|..++.+
T Consensus 141 --~~LY~L~r~~~~~---~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~p----Y~a~el~~Il~~ 201 (366)
T COG1474 141 --EVLYSLLRAPGEN---KVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPP----YTAEELYDILRE 201 (366)
T ss_pred --hHHHHHHhhcccc---ceeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCC----CCHHHHHHHHHH
Confidence 3455555544444 34799999999875 78888888653 4456665 444444444433
|
|
| >TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.012 Score=61.08 Aligned_cols=32 Identities=19% Similarity=0.336 Sum_probs=26.8
Q ss_pred cEEEEEecCCCC-----cCCHHHHhccccEEEeCCCCC
Q 006411 538 QILLVGATNRPQ-----ELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 538 ~VlVIaATNrPd-----~LDpALlRRFDr~I~IplPd~ 570 (646)
.+.||+|+|... .+++|+++|| ..++++.|+.
T Consensus 151 ~frvIaTsN~~~~~g~~~l~~aL~~R~-~~i~i~~P~~ 187 (262)
T TIGR02640 151 EFRVIFTSNPVEYAGVHETQDALLDRL-ITIFMDYPDI 187 (262)
T ss_pred CCEEEEeeCCccccceecccHHHHhhc-EEEECCCCCH
Confidence 567999999763 6799999999 5789999986
|
Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728). |
| >COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.006 Score=72.20 Aligned_cols=87 Identities=25% Similarity=0.374 Sum_probs=62.7
Q ss_pred CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCC
Q 006411 454 IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFD 533 (646)
Q Consensus 454 vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~ 533 (646)
-|+-|..++.+.+..+...+.|+|||||+.|.+ -....++.-....++.-.|
T Consensus 244 RGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVG---------------------AG~~~G~a~DAaNiLKPaL------- 295 (786)
T COG0542 244 RGEFEERLKAVLKEVEKSKNVILFIDEIHTIVG---------------------AGATEGGAMDAANLLKPAL------- 295 (786)
T ss_pred cCcHHHHHHHHHHHHhcCCCeEEEEechhhhcC---------------------CCcccccccchhhhhHHHH-------
Confidence 788999999999999988899999999999987 2212121111222333222
Q ss_pred CCCCcEEEEEecCC-----CCcCCHHHHhccccEEEeCCCCC
Q 006411 534 SGSEQILLVGATNR-----PQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 534 ~~~~~VlVIaATNr-----Pd~LDpALlRRFDr~I~IplPd~ 570 (646)
..+.+-+||||.. .-.-|+||-|||.. |++.-|+.
T Consensus 296 -ARGeL~~IGATT~~EYRk~iEKD~AL~RRFQ~-V~V~EPs~ 335 (786)
T COG0542 296 -ARGELRCIGATTLDEYRKYIEKDAALERRFQK-VLVDEPSV 335 (786)
T ss_pred -hcCCeEEEEeccHHHHHHHhhhchHHHhcCce-eeCCCCCH
Confidence 1456788888875 33679999999976 58999986
|
|
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.017 Score=58.75 Aligned_cols=103 Identities=24% Similarity=0.275 Sum_probs=57.7
Q ss_pred ccccccCCCCchHHHHHHHHHHHhhhc------------------------CCeeeeehhhhHHhhhcccccccchhhhh
Q 006411 445 KGLLLFGPPIGEGEKLVRALFGVASCR------------------------QPAVIFVDEIDSLLSQMLPYMHVHHIKLF 500 (646)
Q Consensus 445 rGVLLyGPPvGesek~Vr~lF~~Ar~~------------------------aPsIIFIDEIDsL~~k~~~~~~~~~~~~~ 500 (646)
..++||||++.++...++.+-..+... +..+|+|||||.+..
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~l~~~dlLiIDDi~~l~~-------------- 107 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGRLRDALEALEGRSLVALDGLESIAG-------------- 107 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhhHHHHHHHHhcCCEEEEeCcccccC--------------
Confidence 459999999666666666654444333 234667777766543
Q ss_pred hhhhhccccCCCCCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcC---CHHHHhcc--ccEEEeCCCCCCCcHH
Q 006411 501 CLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQEL---DEAARRRL--TKRLYIPLPSSGYSGS 575 (646)
Q Consensus 501 ~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~L---DpALlRRF--Dr~I~IplPd~GySGA 575 (646)
.+ . ....+-.+++.+. . ...-+|+.+...|..+ ++++++|| -..+.++.|+. .
T Consensus 108 -------~~------~-~~~~lf~l~n~~~---~-~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~----e 165 (233)
T PRK08727 108 -------QR------E-DEVALFDFHNRAR---A-AGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDD----V 165 (233)
T ss_pred -------Ch------H-HHHHHHHHHHHHH---H-cCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCH----H
Confidence 11 1 1122233444442 2 1122444444466655 79999997 55677787764 4
Q ss_pred HHHHHHHH
Q 006411 576 DMKNLVKE 583 (646)
Q Consensus 576 DL~~Lc~e 583 (646)
++..+++.
T Consensus 166 ~~~~iL~~ 173 (233)
T PRK08727 166 ARAAVLRE 173 (233)
T ss_pred HHHHHHHH
Confidence 55555543
|
|
| >PRK07471 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.012 Score=64.19 Aligned_cols=49 Identities=16% Similarity=0.179 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 518 SRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 518 s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
.....|.||..++... .++++|.+|+.|+.|.|.+++|+. +|.|+.|+.
T Consensus 154 ~~~aanaLLK~LEepp---~~~~~IL~t~~~~~llpti~SRc~-~i~l~~l~~ 202 (365)
T PRK07471 154 NANAANALLKVLEEPP---ARSLFLLVSHAPARLLPTIRSRCR-KLRLRPLAP 202 (365)
T ss_pred CHHHHHHHHHHHhcCC---CCeEEEEEECCchhchHHhhccce-EEECCCCCH
Confidence 3456788888887643 367888899999999999988874 567777754
|
|
| >TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.013 Score=70.42 Aligned_cols=136 Identities=16% Similarity=0.158 Sum_probs=81.7
Q ss_pred ccccChHHHHHHHHHHHHhhccCccccccCC--CCCcc-ccccCCCCchHHHHHHH------------------------
Q 006411 411 DDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR--SPGKG-LLLFGPPIGEGEKLVRA------------------------ 463 (646)
Q Consensus 411 dDIgGle~~K~~L~E~V~lPL~~pelf~~~~--~PprG-VLLyGPPvGesek~Vr~------------------------ 463 (646)
..|+|.+++++.|.+.|..... ++. ..|.| +||+|||+.++....+.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~------gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~ 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARA------GLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAH 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhc------CCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhh
Confidence 3678899999999888876321 121 22455 79999993322222221
Q ss_pred --------------------HHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHH
Q 006411 464 --------------------LFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKT 523 (646)
Q Consensus 464 --------------------lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~riln 523 (646)
+.+..+....+||+|||||..-+ .+.+
T Consensus 640 ~~~~l~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka~~---------------------------------~v~~ 686 (852)
T TIGR03345 640 TVSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHP---------------------------------DVLE 686 (852)
T ss_pred hhccccCCCCCcccccccchHHHHHHhCCCcEEEEechhhcCH---------------------------------HHHH
Confidence 12233445667888888875422 3556
Q ss_pred HHHHHHcCCC--C------CCCcEEEEEecCCCC-----------------------------cCCHHHHhccccEEEeC
Q 006411 524 QFLIEMEGFD--S------GSEQILLVGATNRPQ-----------------------------ELDEAARRRLTKRLYIP 566 (646)
Q Consensus 524 eLL~eLDGl~--~------~~~~VlVIaATNrPd-----------------------------~LDpALlRRFDr~I~Ip 566 (646)
.|+..||.-. . .-.+.+||+|||... .+.|+++.|++ .|.|.
T Consensus 687 ~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~-iI~F~ 765 (852)
T TIGR03345 687 LFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMT-VIPYL 765 (852)
T ss_pred HHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhccee-EEEeC
Confidence 6666665321 0 114689999999622 14466666887 44444
Q ss_pred CCCCCCcHHHHHHHHHHHhhhHHH
Q 006411 567 LPSSGYSGSDMKNLVKEASMGPLR 590 (646)
Q Consensus 567 lPd~GySGADL~~Lc~eAa~~Air 590 (646)
+ ++..+|..++..+...-..
T Consensus 766 p----Ls~e~l~~Iv~~~L~~l~~ 785 (852)
T TIGR03345 766 P----LDDDVLAAIVRLKLDRIAR 785 (852)
T ss_pred C----CCHHHHHHHHHHHHHHHHH
Confidence 3 3779999999876644333
|
Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. |
| >PRK08058 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.013 Score=62.92 Aligned_cols=135 Identities=13% Similarity=0.112 Sum_probs=79.9
Q ss_pred ccccccC-hHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhh-----------------
Q 006411 409 RWDDIAG-LEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASC----------------- 470 (646)
Q Consensus 409 sfdDIgG-le~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~----------------- 470 (646)
.|+.|.| .+.+++.|+..+.. +..+..+|||||++-......+.+-...-+
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~-----------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK-----------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 5888888 88899988887643 345688999999943333333333222211
Q ss_pred ----cCCeeeee---------hhhhHHhhhcccccccchhhhhhhhhhccccCC---CCCchhhHHHHHHHHHHHcCCCC
Q 006411 471 ----RQPAVIFV---------DEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKS---DGEHESSRRLKTQFLIEMEGFDS 534 (646)
Q Consensus 471 ----~aPsIIFI---------DEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s---~~~~e~s~rilneLL~eLDGl~~ 534 (646)
.-|.+.++ |+|-.+... +....+.+.++- +..+..+....|.||..|+...
T Consensus 72 ~~~~~hpD~~~i~~~~~~i~id~ir~l~~~------------~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp- 138 (329)
T PRK08058 72 IDSGNHPDVHLVAPDGQSIKKDQIRYLKEE------------FSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPS- 138 (329)
T ss_pred HhcCCCCCEEEeccccccCCHHHHHHHHHH------------HhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCC-
Confidence 13556555 344333320 000001111110 1112234456788999988754
Q ss_pred CCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 535 GSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 535 ~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
+.+++|.+|+.+..|-|++++|.- .++|+.|+.
T Consensus 139 --~~~~~Il~t~~~~~ll~TIrSRc~-~i~~~~~~~ 171 (329)
T PRK08058 139 --GGTTAILLTENKHQILPTILSRCQ-VVEFRPLPP 171 (329)
T ss_pred --CCceEEEEeCChHhCcHHHHhhce-eeeCCCCCH
Confidence 467777888899999999999884 457777754
|
|
| >PRK14086 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.031 Score=64.97 Aligned_cols=30 Identities=23% Similarity=0.381 Sum_probs=21.2
Q ss_pred EEEecCCC----CcCCHHHHhccc--cEEEeCCCCC
Q 006411 541 LVGATNRP----QELDEAARRRLT--KRLYIPLPSS 570 (646)
Q Consensus 541 VIaATNrP----d~LDpALlRRFD--r~I~IplPd~ 570 (646)
||.|+|++ ..|++.|++||. ..+.|..||.
T Consensus 413 IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~ 448 (617)
T PRK14086 413 IVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPEL 448 (617)
T ss_pred EEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCH
Confidence 34466664 357899999985 5557888885
|
|
| >PRK06620 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.017 Score=58.33 Aligned_cols=131 Identities=12% Similarity=0.175 Sum_probs=74.0
Q ss_pred cCCCCcccccccChH---HHHHHHHHHHHhhccCccccccCCCC-CccccccCCCCchHHHHHHHHHHHhh---------
Q 006411 403 DRDPHVRWDDIAGLE---HAKKCVMEMVIWPLLRPDIFKGCRSP-GKGLLLFGPPIGEGEKLVRALFGVAS--------- 469 (646)
Q Consensus 403 ~~~p~VsfdDIgGle---~~K~~L~E~V~lPL~~pelf~~~~~P-prGVLLyGPPvGesek~Vr~lF~~Ar--------- 469 (646)
...|..+|++++--+ .+...++++...| . ..| .+.++|||||+.++...++.+-..+.
T Consensus 8 ~~~~~~tfd~Fvvg~~N~~a~~~~~~~~~~~----~-----~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~~~~~ 78 (214)
T PRK06620 8 TTSSKYHPDEFIVSSSNDQAYNIIKNWQCGF----G-----VNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIKDIFF 78 (214)
T ss_pred CCCCCCCchhhEecccHHHHHHHHHHHHHcc----c-----cCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcchhhh
Confidence 346677888865433 3555555544321 0 122 26799999996666666664322211
Q ss_pred ----hcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCCCCCcEEEEEec
Q 006411 470 ----CRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGAT 545 (646)
Q Consensus 470 ----~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~~~~VlVIaAT 545 (646)
.....+++|||||.+- ...+-.+++.+. . .+..+||++|
T Consensus 79 ~~~~~~~~d~lliDdi~~~~---------------------------------~~~lf~l~N~~~---e-~g~~ilits~ 121 (214)
T PRK06620 79 NEEILEKYNAFIIEDIENWQ---------------------------------EPALLHIFNIIN---E-KQKYLLLTSS 121 (214)
T ss_pred chhHHhcCCEEEEeccccch---------------------------------HHHHHHHHHHHH---h-cCCEEEEEcC
Confidence 0123467777777321 112233333333 3 3457788888
Q ss_pred CCCCc--CCHHHHhccc--cEEEeCCCCCCCcHHHHHHHHHHH
Q 006411 546 NRPQE--LDEAARRRLT--KRLYIPLPSSGYSGSDMKNLVKEA 584 (646)
Q Consensus 546 NrPd~--LDpALlRRFD--r~I~IplPd~GySGADL~~Lc~eA 584 (646)
..|.. | |+|+.|+. ..+.+..|+. .++..+++.+
T Consensus 122 ~~p~~l~l-~~L~SRl~~gl~~~l~~pd~----~~~~~~l~k~ 159 (214)
T PRK06620 122 DKSRNFTL-PDLSSRIKSVLSILLNSPDD----ELIKILIFKH 159 (214)
T ss_pred CCccccch-HHHHHHHhCCceEeeCCCCH----HHHHHHHHHH
Confidence 77775 6 78888986 3578888875 4455555443
|
|
| >CHL00095 clpC Clp protease ATP binding subunit | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.015 Score=69.50 Aligned_cols=141 Identities=16% Similarity=0.176 Sum_probs=85.3
Q ss_pred ccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHH---------------------------
Q 006411 411 DDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRA--------------------------- 463 (646)
Q Consensus 411 dDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~--------------------------- 463 (646)
..|.|.+++++.|...+...... + ....+|...+||+|||+.++....+.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~g--l-~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~ 585 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVG--L-KNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVS 585 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhc--c-cCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHH
Confidence 46789999999998888652210 0 01123334589999992222222221
Q ss_pred -----------------HHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHH
Q 006411 464 -----------------LFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFL 526 (646)
Q Consensus 464 -----------------lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL 526 (646)
+.+..+....+||||||||.+-+ .+.+.||
T Consensus 586 ~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~---------------------------------~v~~~Ll 632 (821)
T CHL00095 586 KLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHP---------------------------------DIFNLLL 632 (821)
T ss_pred HhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCH---------------------------------HHHHHHH
Confidence 22333333347888899886533 3567777
Q ss_pred HHHcCCC--C------CCCcEEEEEecCCCCc-------------------------------------CCHHHHhcccc
Q 006411 527 IEMEGFD--S------GSEQILLVGATNRPQE-------------------------------------LDEAARRRLTK 561 (646)
Q Consensus 527 ~eLDGl~--~------~~~~VlVIaATNrPd~-------------------------------------LDpALlRRFDr 561 (646)
..||.-. . .-.+.+||+|||.... +.|.++.|+|.
T Consensus 633 q~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ 712 (821)
T CHL00095 633 QILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDE 712 (821)
T ss_pred HHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCe
Confidence 7777411 0 1246899999996421 12456668988
Q ss_pred EEEeCCCCCCCcHHHHHHHHHHHhhhHHHH
Q 006411 562 RLYIPLPSSGYSGSDMKNLVKEASMGPLRE 591 (646)
Q Consensus 562 ~I~IplPd~GySGADL~~Lc~eAa~~Airr 591 (646)
+|.|.+. +..+|..+++.+...-..+
T Consensus 713 ii~F~pL----~~~~l~~Iv~~~l~~l~~r 738 (821)
T CHL00095 713 IIVFRQL----TKNDVWEIAEIMLKNLFKR 738 (821)
T ss_pred EEEeCCC----CHHHHHHHHHHHHHHHHHH
Confidence 8777663 6699999987766544333
|
|
| >TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.02 Score=68.84 Aligned_cols=47 Identities=17% Similarity=0.261 Sum_probs=28.8
Q ss_pred ccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHH
Q 006411 411 DDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKL 460 (646)
Q Consensus 411 dDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~ 460 (646)
..|.|.+.+.+.|.+.+...... .....+|...+||+|||+.++...
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~g---l~~~~~p~~~~Lf~Gp~GvGKt~l 611 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAG---LSDPNRPIGSFLFLGPTGVGKTEL 611 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhcc---CCCCCCCCeEEEEEcCCCCCHHHH
Confidence 46888999999988888763210 000113445689999994333333
|
Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. |
| >PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.014 Score=56.39 Aligned_cols=47 Identities=15% Similarity=0.175 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCC
Q 006411 517 SSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPL 567 (646)
Q Consensus 517 ~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~Ipl 567 (646)
.+....|.||..|+.... ++++|.+|+.++.|-|.+++|.-. |.|+.
T Consensus 114 l~~~a~NaLLK~LEepp~---~~~fiL~t~~~~~il~TI~SRc~~-i~~~~ 160 (162)
T PF13177_consen 114 LTEEAQNALLKTLEEPPE---NTYFILITNNPSKILPTIRSRCQV-IRFRP 160 (162)
T ss_dssp S-HHHHHHHHHHHHSTTT---TEEEEEEES-GGGS-HHHHTTSEE-EEE--
T ss_pred hhHHHHHHHHHHhcCCCC---CEEEEEEECChHHChHHHHhhceE-EecCC
Confidence 345678999999998654 789999999999999999998733 34443
|
... |
| >COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0053 Score=69.84 Aligned_cols=140 Identities=21% Similarity=0.268 Sum_probs=83.7
Q ss_pred ccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhc------CCee
Q 006411 402 MDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCR------QPAV 475 (646)
Q Consensus 402 ~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~------aPsI 475 (646)
..++.+-+|+|+.|.+.+...|...+.. .+-..++||.||- |-+...+..+|..|-.+ .||.
T Consensus 7 ~rKyRP~~F~evvGQe~v~~~L~nal~~-----------~ri~hAYlfsG~R-GvGKTt~Ari~AkalNC~~~~~~ePC~ 74 (515)
T COG2812 7 ARKYRPKTFDDVVGQEHVVKTLSNALEN-----------GRIAHAYLFSGPR-GVGKTTIARILAKALNCENGPTAEPCG 74 (515)
T ss_pred HHHhCcccHHHhcccHHHHHHHHHHHHh-----------CcchhhhhhcCCC-CcCchhHHHHHHHHhcCCCCCCCCcch
Confidence 4567788999999999999999998866 2234789999998 55555556666655322 2331
Q ss_pred ee-----------e--hhhhHHhhhcccccccchhhhhhhhhhccccCC-------CCCchhhHHHHHHHHHHHcCCCCC
Q 006411 476 IF-----------V--DEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKS-------DGEHESSRRLKTQFLIEMEGFDSG 535 (646)
Q Consensus 476 IF-----------I--DEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s-------~~~~e~s~rilneLL~eLDGl~~~ 535 (646)
-. + =|||+.-.+ ++..++..-.+-.+..-.+ +.-|--+....|.||..|+.-
T Consensus 75 ~C~~Ck~I~~g~~~DviEiDaASn~-----gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEP--- 146 (515)
T COG2812 75 KCISCKEINEGSLIDVIEIDAASNT-----GVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEP--- 146 (515)
T ss_pred hhhhhHhhhcCCcccchhhhhhhcc-----ChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccC---
Confidence 11 0 022222110 1111111111100000000 222334566788888877764
Q ss_pred CCcEEEEEecCCCCcCCHHHHhcccc
Q 006411 536 SEQILLVGATNRPQELDEAARRRLTK 561 (646)
Q Consensus 536 ~~~VlVIaATNrPd~LDpALlRRFDr 561 (646)
-..|++|.||..|+.|.+.+++|+-+
T Consensus 147 P~hV~FIlATTe~~Kip~TIlSRcq~ 172 (515)
T COG2812 147 PSHVKFILATTEPQKIPNTILSRCQR 172 (515)
T ss_pred ccCeEEEEecCCcCcCchhhhhcccc
Confidence 34899999999999999999996543
|
|
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.033 Score=59.58 Aligned_cols=25 Identities=16% Similarity=0.333 Sum_probs=19.6
Q ss_pred HHHHHHhhhcCCeeeeehhhhHHhh
Q 006411 462 RALFGVASCRQPAVIFVDEIDSLLS 486 (646)
Q Consensus 462 r~lF~~Ar~~aPsIIFIDEIDsL~~ 486 (646)
..+....+..++-+|+|||+..++.
T Consensus 135 ~~~~~llr~~~vrmLIIDE~H~lLa 159 (302)
T PF05621_consen 135 QQVLRLLRRLGVRMLIIDEFHNLLA 159 (302)
T ss_pred HHHHHHHHHcCCcEEEeechHHHhc
Confidence 3345566777899999999999875
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >PRK06964 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0041 Score=67.41 Aligned_cols=49 Identities=12% Similarity=0.162 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 518 SRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 518 s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
.....|.||..|+.- .+++++|.+|++|+.|.|.+++|+ ..|.|++|+.
T Consensus 145 ~~~AaNaLLKtLEEP---p~~t~fiL~t~~~~~LLpTI~SRc-q~i~~~~~~~ 193 (342)
T PRK06964 145 NVAAANALLKTLEEP---PPGTVFLLVSARIDRLLPTILSRC-RQFPMTVPAP 193 (342)
T ss_pred CHHHHHHHHHHhcCC---CcCcEEEEEECChhhCcHHHHhcC-EEEEecCCCH
Confidence 345569999999864 457899999999999999999999 5788888864
|
|
| >PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.011 Score=57.82 Aligned_cols=54 Identities=26% Similarity=0.381 Sum_probs=39.2
Q ss_pred eeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCC--------CCCcEEEEEecC
Q 006411 475 VIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDS--------GSEQILLVGATN 546 (646)
Q Consensus 475 IIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~--------~~~~VlVIaATN 546 (646)
||||||||.+.+ . .+.+.+.....+.+.||..||+-.= ...++++|+|||
T Consensus 71 VVllDEidKa~~---------------------~-~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn 128 (171)
T PF07724_consen 71 VVLLDEIDKAHP---------------------S-NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSN 128 (171)
T ss_dssp EEEEETGGGCSH---------------------T-TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEES
T ss_pred hhhhHHHhhccc---------------------c-ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecc
Confidence 999999999976 2 3444555566788999998874320 135799999999
Q ss_pred CCCc
Q 006411 547 RPQE 550 (646)
Q Consensus 547 rPd~ 550 (646)
--..
T Consensus 129 ~~~~ 132 (171)
T PF07724_consen 129 FGAE 132 (171)
T ss_dssp SSTH
T ss_pred cccc
Confidence 7553
|
The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E .... |
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.043 Score=56.02 Aligned_cols=128 Identities=16% Similarity=0.148 Sum_probs=69.8
Q ss_pred cCCCCccccccc-ChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhcCCe-------
Q 006411 403 DRDPHVRWDDIA-GLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCRQPA------- 474 (646)
Q Consensus 403 ~~~p~VsfdDIg-Gle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~aPs------- 474 (646)
...|..+|++.. |-. .....++..+.... ...+...++||||++.++...++.+-..+....-.
T Consensus 11 ~~~~~~tfdnF~~~~~---~~a~~~~~~~~~~~-----~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~ 82 (234)
T PRK05642 11 RLRDDATFANYYPGAN---AAALGYVERLCEAD-----AGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLA 82 (234)
T ss_pred CCCCcccccccCcCCh---HHHHHHHHHHhhcc-----ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHH
Confidence 345677888875 321 22233332221111 11234678999999777777777765544332233
Q ss_pred -----------------eeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCCCCC
Q 006411 475 -----------------VIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSE 537 (646)
Q Consensus 475 -----------------IIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~~~ 537 (646)
+|+||||+.+.. + .....+|...++.+.. .+
T Consensus 83 ~~~~~~~~~~~~~~~~d~LiiDDi~~~~~---------------------~----------~~~~~~Lf~l~n~~~~-~g 130 (234)
T PRK05642 83 ELLDRGPELLDNLEQYELVCLDDLDVIAG---------------------K----------ADWEEALFHLFNRLRD-SG 130 (234)
T ss_pred HHHhhhHHHHHhhhhCCEEEEechhhhcC---------------------C----------hHHHHHHHHHHHHHHh-cC
Confidence 455555554432 0 1122345555555444 34
Q ss_pred cEEEEEecCCCCcC---CHHHHhccc--cEEEeCCCCC
Q 006411 538 QILLVGATNRPQEL---DEAARRRLT--KRLYIPLPSS 570 (646)
Q Consensus 538 ~VlVIaATNrPd~L---DpALlRRFD--r~I~IplPd~ 570 (646)
+.+||+++..|..+ .|.+++||. ..+.+..|+.
T Consensus 131 ~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~ 168 (234)
T PRK05642 131 RRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSD 168 (234)
T ss_pred CEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCH
Confidence 56777777767544 688888985 5556667653
|
|
| >COG0714 MoxR-like ATPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.015 Score=61.90 Aligned_cols=49 Identities=22% Similarity=0.397 Sum_probs=37.1
Q ss_pred HHHHHHHHHcC----------CCCCCCcEEEEEecC-----CCCcCCHHHHhccccEEEeCCCCC
Q 006411 521 LKTQFLIEMEG----------FDSGSEQILLVGATN-----RPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 521 ilneLL~eLDG----------l~~~~~~VlVIaATN-----rPd~LDpALlRRFDr~I~IplPd~ 570 (646)
+.+.||..|+. +.- ....+||+|+| .-..|.+|+++||.-.++++.|+.
T Consensus 128 ~q~aLl~~l~e~~vtv~~~~~~~~-~~~f~viaT~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~ 191 (329)
T COG0714 128 VQNALLEALEERQVTVPGLTTIRL-PPPFIVIATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDS 191 (329)
T ss_pred HHHHHHHHHhCcEEEECCcCCcCC-CCCCEEEEccCccccCCCcCCCHHHHhhEEEEEecCCCCc
Confidence 55666666664 111 35688999999 677899999999999999999954
|
|
| >PHA02244 ATPase-like protein | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.016 Score=63.78 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=28.1
Q ss_pred CCcEEEEEecCCC-----------CcCCHHHHhccccEEEeCCCCC
Q 006411 536 SEQILLVGATNRP-----------QELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 536 ~~~VlVIaATNrP-----------d~LDpALlRRFDr~I~IplPd~ 570 (646)
..++.||+|+|.+ ..|++|++.||- .|++..|+.
T Consensus 219 h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRFv-~I~~dyp~~ 263 (383)
T PHA02244 219 HEDFRVISAGNTLGKGADHIYVARNKIDGATLDRFA-PIEFDYDEK 263 (383)
T ss_pred CCCEEEEEeeCCCccCcccccCCCcccCHHHHhhcE-EeeCCCCcH
Confidence 3578999999974 578999999995 689998874
|
|
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.046 Score=55.40 Aligned_cols=133 Identities=21% Similarity=0.339 Sum_probs=70.6
Q ss_pred CCCccccccc-C--hHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhcCC--------
Q 006411 405 DPHVRWDDIA-G--LEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCRQP-------- 473 (646)
Q Consensus 405 ~p~VsfdDIg-G--le~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~aP-------- 473 (646)
+|+.||++.+ | -+.+...++.....|- .....++||||++.++...++++...+....|
T Consensus 2 n~~~tFdnfv~g~~N~~a~~~~~~ia~~~~----------~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~ 71 (219)
T PF00308_consen 2 NPKYTFDNFVVGESNELAYAAAKAIAENPG----------ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS 71 (219)
T ss_dssp -TT-SCCCS--TTTTHHHHHHHHHHHHSTT----------TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE
T ss_pred CCCCccccCCcCCcHHHHHHHHHHHHhcCC----------CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec
Confidence 4778999874 4 2334444443333211 11234899999977778888888776654322
Q ss_pred ---------------------------eeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHH
Q 006411 474 ---------------------------AVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFL 526 (646)
Q Consensus 474 ---------------------------sIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL 526 (646)
.+|+||+|+.+.. ...+..+|.
T Consensus 72 ~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~-------------------------------~~~~q~~lf 120 (219)
T PF00308_consen 72 AEEFIREFADALRDGEIEEFKDRLRSADLLIIDDIQFLAG-------------------------------KQRTQEELF 120 (219)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGTT-------------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccchhhhhhhhcCCEEEEecchhhcC-------------------------------chHHHHHHH
Confidence 3445555555433 122344555
Q ss_pred HHHcCCCCCCCcEEEEEecCCCCc---CCHHHHhcccc--EEEeCCCCCCCcHHHHHHHHHH
Q 006411 527 IEMEGFDSGSEQILLVGATNRPQE---LDEAARRRLTK--RLYIPLPSSGYSGSDMKNLVKE 583 (646)
Q Consensus 527 ~eLDGl~~~~~~VlVIaATNrPd~---LDpALlRRFDr--~I~IplPd~GySGADL~~Lc~e 583 (646)
..++.+.. .++.+||.+...|.. +++.|..||.- .+.+..|+. .+...+++.
T Consensus 121 ~l~n~~~~-~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~----~~r~~il~~ 177 (219)
T PF00308_consen 121 HLFNRLIE-SGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDD----EDRRRILQK 177 (219)
T ss_dssp HHHHHHHH-TTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----H----HHHHHHHHH
T ss_pred HHHHHHHh-hCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCH----HHHHHHHHH
Confidence 55555544 334566666566665 56788888865 677777763 454444443
|
DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A. |
| >TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.027 Score=61.07 Aligned_cols=52 Identities=19% Similarity=0.166 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHcC---------CCC-CCCcEEEEEecCCCC-cCCHHHHhccccEEEeCCCCC
Q 006411 519 RRLKTQFLIEMEG---------FDS-GSEQILLVGATNRPQ-ELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 519 ~rilneLL~eLDG---------l~~-~~~~VlVIaATNrPd-~LDpALlRRFDr~I~IplPd~ 570 (646)
..+.+.|+..|+. ... ...++++|+|+|-.+ .|.++++.||.-++.++.|..
T Consensus 145 ~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~ 207 (337)
T TIGR02030 145 DHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRD 207 (337)
T ss_pred HHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCC
Confidence 3455667766642 111 124688888888555 699999999999999999864
|
This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. |
| >COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.045 Score=59.67 Aligned_cols=76 Identities=22% Similarity=0.411 Sum_probs=52.3
Q ss_pred CeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCC-------CCCcEEEEEec
Q 006411 473 PAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDS-------GSEQILLVGAT 545 (646)
Q Consensus 473 PsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~-------~~~~VlVIaAT 545 (646)
--||||||||.|+. +.+.++..-+-.-+...||-.+.|-.- +++.|++|++-
T Consensus 251 ~GIvFIDEIDKIa~---------------------~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasG 309 (444)
T COG1220 251 NGIVFIDEIDKIAK---------------------RGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASG 309 (444)
T ss_pred cCeEEEehhhHHHh---------------------cCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecC
Confidence 45999999999997 221111111222344567766666431 25679999984
Q ss_pred ----CCCCcCCHHHHhccccEEEeCCCC
Q 006411 546 ----NRPQELDEAARRRLTKRLYIPLPS 569 (646)
Q Consensus 546 ----NrPd~LDpALlRRFDr~I~IplPd 569 (646)
..|.+|=|.|--||.-++++...+
T Consensus 310 AFh~sKPSDLiPELQGRfPIRVEL~~Lt 337 (444)
T COG1220 310 AFHVAKPSDLIPELQGRFPIRVELDALT 337 (444)
T ss_pred ceecCChhhcChhhcCCCceEEEcccCC
Confidence 569999999999999999998754
|
|
| >COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.042 Score=56.94 Aligned_cols=46 Identities=20% Similarity=0.254 Sum_probs=34.7
Q ss_pred HHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 521 LKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 521 ilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
..+.|+..|.... .+..+|.+||.|+.|=+-+++|.-. +.|++|+.
T Consensus 125 A~nallk~lEep~---~~~~~il~~n~~~~il~tI~SRc~~-i~f~~~~~ 170 (325)
T COG0470 125 AANALLKTLEEPP---KNTRFILITNDPSKILPTIRSRCQR-IRFKPPSR 170 (325)
T ss_pred HHHHHHHHhccCC---CCeEEEEEcCChhhccchhhhccee-eecCCchH
Confidence 4577887776654 4688999999999999988888744 56766543
|
|
| >TIGR02442 Cob-chelat-sub cobaltochelatase subunit | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.039 Score=64.37 Aligned_cols=53 Identities=17% Similarity=0.177 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHcCC---------C-CCCCcEEEEEecCCC-CcCCHHHHhccccEEEeCCCCC
Q 006411 518 SRRLKTQFLIEMEGF---------D-SGSEQILLVGATNRP-QELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 518 s~rilneLL~eLDGl---------~-~~~~~VlVIaATNrP-d~LDpALlRRFDr~I~IplPd~ 570 (646)
...+.+.||..|+.= . ....++.||+|+|-. ..|.++|+.||+-+|.++.|..
T Consensus 139 ~~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~ 202 (633)
T TIGR02442 139 DDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRD 202 (633)
T ss_pred CHHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCc
Confidence 345677777777521 1 012468999999843 3689999999999998887753
|
A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis. |
| >PRK13531 regulatory ATPase RavA; Provisional | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.1 Score=59.35 Aligned_cols=53 Identities=23% Similarity=0.207 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHc-CC------CCCCCcEEEEEecCCCCc---CCHHHHhccccEEEeCCCCC
Q 006411 518 SRRLKTQFLIEME-GF------DSGSEQILLVGATNRPQE---LDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 518 s~rilneLL~eLD-Gl------~~~~~~VlVIaATNrPd~---LDpALlRRFDr~I~IplPd~ 570 (646)
+..+.+.||..|. +. ...-+..++++|||.... ..+|++-||--+|.+|.|+.
T Consensus 120 sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~DRFliri~vp~l~~ 182 (498)
T PRK13531 120 GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYDRMLIRLWLDKVQD 182 (498)
T ss_pred CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHhhEEEEEECCCCCc
Confidence 4567788888883 22 111223455666674332 33589999988899999863
|
|
| >TIGR00368 Mg chelatase-related protein | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.056 Score=61.51 Aligned_cols=55 Identities=24% Similarity=0.207 Sum_probs=40.7
Q ss_pred CcEEEEEecCCC-----C------------------cCCHHHHhccccEEEeCCCCC--------CCcHHHHHHHHHHHh
Q 006411 537 EQILLVGATNRP-----Q------------------ELDEAARRRLTKRLYIPLPSS--------GYSGSDMKNLVKEAS 585 (646)
Q Consensus 537 ~~VlVIaATNrP-----d------------------~LDpALlRRFDr~I~IplPd~--------GySGADL~~Lc~eAa 585 (646)
.++.+|+|||.- . .|...|+.|||-++.++.++. |-+-+++++-|..|-
T Consensus 337 a~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~l~~~~~~e~s~~ir~rV~~Ar 416 (499)
T TIGR00368 337 ARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEKLLSTGSGESSAEVKQRVIKAR 416 (499)
T ss_pred CCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHHHhccCCCCCHHHHHHHHHHHH
Confidence 468899999852 1 488889999999999998753 567788887777665
Q ss_pred hhHHHH
Q 006411 586 MGPLRE 591 (646)
Q Consensus 586 ~~Airr 591 (646)
.....|
T Consensus 417 ~~q~~R 422 (499)
T TIGR00368 417 EIQNIR 422 (499)
T ss_pred HHHHHH
Confidence 544443
|
The N-terminal end matches very strongly a pfam Mg_chelatase domain. |
| >PRK09087 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.063 Score=54.77 Aligned_cols=91 Identities=15% Similarity=0.167 Sum_probs=54.3
Q ss_pred ccccccCCCCchHHHHHHHHHHHhhh---------------cCCeeeeehhhhHHhhhcccccccchhhhhhhhhhcccc
Q 006411 445 KGLLLFGPPIGEGEKLVRALFGVASC---------------RQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQR 509 (646)
Q Consensus 445 rGVLLyGPPvGesek~Vr~lF~~Ar~---------------~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R 509 (646)
+-++||||++.++...++.+-..+.. ....+|+|||||.+..
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~iDDi~~~~~----------------------- 101 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLIHPNEIGSDAANAAAEGPVLIEDIDAGGF----------------------- 101 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcchHHHHhhhcCeEEEECCCCCCC-----------------------
Confidence 34899999977777877765433211 0123577788775421
Q ss_pred CCCCCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcC---CHHHHhccc--cEEEeCCCCC
Q 006411 510 KSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQEL---DEAARRRLT--KRLYIPLPSS 570 (646)
Q Consensus 510 ~s~~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~L---DpALlRRFD--r~I~IplPd~ 570 (646)
. . .+|...++.+.. .+..+||+++..|..+ .+.++.||. ..+.+..|+.
T Consensus 102 ----~----~---~~lf~l~n~~~~-~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~ 155 (226)
T PRK09087 102 ----D----E---TGLFHLINSVRQ-AGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDD 155 (226)
T ss_pred ----C----H---HHHHHHHHHHHh-CCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCH
Confidence 0 1 123333433333 2345666666655533 677888886 7788888875
|
|
| >PRK10865 protein disaggregation chaperone; Provisional | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.066 Score=64.61 Aligned_cols=67 Identities=4% Similarity=0.030 Sum_probs=44.3
Q ss_pred HHHHHHHHHHcCC--CC------CCCcEEEEEecCCCC-------------------------cCCHHHHhccccEEEeC
Q 006411 520 RLKTQFLIEMEGF--DS------GSEQILLVGATNRPQ-------------------------ELDEAARRRLTKRLYIP 566 (646)
Q Consensus 520 rilneLL~eLDGl--~~------~~~~VlVIaATNrPd-------------------------~LDpALlRRFDr~I~Ip 566 (646)
.+.+.|+..|+.- .. .-.+.+||+|||... .+.|+++.|+|..+.|.
T Consensus 685 ~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~ 764 (857)
T PRK10865 685 DVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFH 764 (857)
T ss_pred HHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecC
Confidence 4566777777521 11 123578999999731 24578888999888887
Q ss_pred CCCCCCcHHHHHHHHHHHhhhHHH
Q 006411 567 LPSSGYSGSDMKNLVKEASMGPLR 590 (646)
Q Consensus 567 lPd~GySGADL~~Lc~eAa~~Air 590 (646)
+++. .||..+++........
T Consensus 765 PL~~----edl~~Iv~~~L~~l~~ 784 (857)
T PRK10865 765 PLGE----QHIASIAQIQLQRLYK 784 (857)
T ss_pred CCCH----HHHHHHHHHHHHHHHH
Confidence 7664 6888888776654433
|
|
| >PRK05707 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.021 Score=61.54 Aligned_cols=49 Identities=22% Similarity=0.336 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 518 SRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 518 s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
.....|.||..|+.-. +++++|.+|+.|+.|-|.+++|+.. +.|++|+.
T Consensus 119 ~~~aaNaLLK~LEEPp---~~~~fiL~t~~~~~ll~TI~SRc~~-~~~~~~~~ 167 (328)
T PRK05707 119 NRNAANALLKSLEEPS---GDTVLLLISHQPSRLLPTIKSRCQQ-QACPLPSN 167 (328)
T ss_pred CHHHHHHHHHHHhCCC---CCeEEEEEECChhhCcHHHHhhcee-eeCCCcCH
Confidence 4567899999998843 4788999999999999999999866 68888764
|
|
| >PRK07993 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.12 Score=55.80 Aligned_cols=49 Identities=20% Similarity=0.247 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 518 SRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 518 s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
.....|.||..|+.- .+++++|.+|+.|+.|-|.+++|.-. +.|++|+.
T Consensus 121 ~~~AaNaLLKtLEEP---p~~t~fiL~t~~~~~lLpTIrSRCq~-~~~~~~~~ 169 (334)
T PRK07993 121 TDAAANALLKTLEEP---PENTWFFLACREPARLLATLRSRCRL-HYLAPPPE 169 (334)
T ss_pred CHHHHHHHHHHhcCC---CCCeEEEEEECChhhChHHHHhcccc-ccCCCCCH
Confidence 345778999999874 45789999999999999999999874 68888864
|
|
| >PRK08769 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.28 Score=52.97 Aligned_cols=48 Identities=23% Similarity=0.263 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 519 RRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 519 ~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
..-.|.||..|+.-. .++++|.+|+.|+.|-|.+++|+.. |.|+.|+.
T Consensus 127 ~~AaNaLLKtLEEPp---~~~~fiL~~~~~~~lLpTIrSRCq~-i~~~~~~~ 174 (319)
T PRK08769 127 RAACNALLKTLEEPS---PGRYLWLISAQPARLPATIRSRCQR-LEFKLPPA 174 (319)
T ss_pred HHHHHHHHHHhhCCC---CCCeEEEEECChhhCchHHHhhheE-eeCCCcCH
Confidence 456788999888754 4678888899999999999999854 57777764
|
|
| >TIGR01650 PD_CobS cobaltochelatase, CobS subunit | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.097 Score=56.73 Aligned_cols=34 Identities=12% Similarity=0.103 Sum_probs=28.4
Q ss_pred CcEEEEEecCCCC------------cCCHHHHhccccEEEeCCCCC
Q 006411 537 EQILLVGATNRPQ------------ELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 537 ~~VlVIaATNrPd------------~LDpALlRRFDr~I~IplPd~ 570 (646)
....||+|+|... .|++|++.||-..+.++.|+.
T Consensus 177 p~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~~ 222 (327)
T TIGR01650 177 PAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTLNYLEH 222 (327)
T ss_pred CCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheeeEeeCCCCCH
Confidence 4688999999855 468999999998888888875
|
This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model. |
| >smart00350 MCM minichromosome maintenance proteins | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.15 Score=57.98 Aligned_cols=34 Identities=12% Similarity=0.096 Sum_probs=26.3
Q ss_pred CcEEEEEecCCCC-------------cCCHHHHhccccEEEe-CCCCC
Q 006411 537 EQILLVGATNRPQ-------------ELDEAARRRLTKRLYI-PLPSS 570 (646)
Q Consensus 537 ~~VlVIaATNrPd-------------~LDpALlRRFDr~I~I-plPd~ 570 (646)
.+..||+|+|-.+ .|+++++.|||-.+.+ ..|+.
T Consensus 342 ~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~ 389 (509)
T smart00350 342 ARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDE 389 (509)
T ss_pred CCcEEEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCCh
Confidence 4688999999642 6999999999986554 56664
|
|
| >COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.37 Score=53.73 Aligned_cols=126 Identities=18% Similarity=0.293 Sum_probs=74.4
Q ss_pred cCCCCcccccccC---hHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhcCC------
Q 006411 403 DRDPHVRWDDIAG---LEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCRQP------ 473 (646)
Q Consensus 403 ~~~p~VsfdDIgG---le~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~aP------ 473 (646)
...|..+|++.+. ..-+.......-..| +.+..=++||||.+.+....++++-..+....|
T Consensus 79 ~l~~~ytFdnFv~g~~N~~A~aa~~~va~~~----------g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y 148 (408)
T COG0593 79 GLNPKYTFDNFVVGPSNRLAYAAAKAVAENP----------GGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVY 148 (408)
T ss_pred cCCCCCchhheeeCCchHHHHHHHHHHHhcc----------CCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEe
Confidence 3567888888653 222333333333332 112345899999977777888888777766655
Q ss_pred ----------------------------eeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHH
Q 006411 474 ----------------------------AVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQF 525 (646)
Q Consensus 474 ----------------------------sIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneL 525 (646)
.+++||+|+.+.. + .++-.+|
T Consensus 149 ~~se~f~~~~v~a~~~~~~~~Fk~~y~~dlllIDDiq~l~g---------------------k----------~~~qeef 197 (408)
T COG0593 149 LTSEDFTNDFVKALRDNEMEKFKEKYSLDLLLIDDIQFLAG---------------------K----------ERTQEEF 197 (408)
T ss_pred ccHHHHHHHHHHHHHhhhHHHHHHhhccCeeeechHhHhcC---------------------C----------hhHHHHH
Confidence 2556666666654 1 1123344
Q ss_pred HHHHcCCCCCCCcEEEEEecCCCCcC---CHHHHhccc--cEEEeCCCCC
Q 006411 526 LIEMEGFDSGSEQILLVGATNRPQEL---DEAARRRLT--KRLYIPLPSS 570 (646)
Q Consensus 526 L~eLDGl~~~~~~VlVIaATNrPd~L---DpALlRRFD--r~I~IplPd~ 570 (646)
......+.. .++-+|+.+-..|..| +|.|++||. -.+.+.+||.
T Consensus 198 Fh~FN~l~~-~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~ 246 (408)
T COG0593 198 FHTFNALLE-NGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDD 246 (408)
T ss_pred HHHHHHHHh-cCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCH
Confidence 444444444 2334666666667665 488888987 4566788875
|
|
| >COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.77 Score=48.37 Aligned_cols=135 Identities=19% Similarity=0.254 Sum_probs=86.0
Q ss_pred ccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhcCCeeeeehh-
Q 006411 402 MDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCRQPAVIFVDE- 480 (646)
Q Consensus 402 ~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~aPsIIFIDE- 480 (646)
+...+.+.+.+|.|++.+++.|.+.-...+ -+.|-..|||+|-.+.++...|++++.......+.+|=|+-
T Consensus 51 v~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~--------~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~ 122 (287)
T COG2607 51 VPDPDPIDLADLVGVDRQKEALVRNTEQFA--------EGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKE 122 (287)
T ss_pred CCCCCCcCHHHHhCchHHHHHHHHHHHHHH--------cCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHH
Confidence 355667999999999999999987665533 24567899999999888999999999998888888776643
Q ss_pred -hhHHhhhcccccccchh--hhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCC-CCCcEEEEEecCCCCcCCHH
Q 006411 481 -IDSLLSQMLPYMHVHHI--KLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDS-GSEQILLVGATNRPQELDEA 554 (646)
Q Consensus 481 -IDsL~~k~~~~~~~~~~--~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~-~~~~VlVIaATNrPd~LDpA 554 (646)
|..|-. .+.-+..... -+||+.-.+. +.+. -...|-.-|||=-. ...+|+|-+|+||-..|..-
T Consensus 123 dl~~Lp~-l~~~Lr~~~~kFIlFcDDLSFe------~gd~---~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~e~ 190 (287)
T COG2607 123 DLATLPD-LVELLRARPEKFILFCDDLSFE------EGDD---AYKALKSALEGGVEGRPANVLFYATSNRRHLLPED 190 (287)
T ss_pred HHhhHHH-HHHHHhcCCceEEEEecCCCCC------CCch---HHHHHHHHhcCCcccCCCeEEEEEecCCcccccHh
Confidence 333221 0000111111 1345432111 1111 22344455675433 45689999999997766643
|
|
| >TIGR00602 rad24 checkpoint protein rad24 | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.35 Score=56.82 Aligned_cols=44 Identities=16% Similarity=0.153 Sum_probs=32.0
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCC
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP 453 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPP 453 (646)
++..+.+++||+|-++.++.|+.++.. ...+ ..+.+-++|+|||
T Consensus 76 eKyrP~~ldel~~~~~ki~~l~~~l~~-~~~~------~~~~~illL~GP~ 119 (637)
T TIGR00602 76 EKYKPETQHELAVHKKKIEEVETWLKA-QVLE------NAPKRILLITGPS 119 (637)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHh-cccc------cCCCcEEEEECCC
Confidence 456678899999999999998887654 2111 1234569999999
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.23 Score=55.81 Aligned_cols=24 Identities=17% Similarity=0.167 Sum_probs=16.1
Q ss_pred CccccccCCCCchHHHHHHHHHHH
Q 006411 444 GKGLLLFGPPIGEGEKLVRALFGV 467 (646)
Q Consensus 444 prGVLLyGPPvGesek~Vr~lF~~ 467 (646)
...++||||++.++..+++++-..
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~ 164 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNY 164 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHH
Confidence 457999999955555555555443
|
|
| >COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.44 Score=56.97 Aligned_cols=129 Identities=18% Similarity=0.256 Sum_probs=79.3
Q ss_pred ccccChHHHHHHHHHHHHhhccCccccccCC---CCCccccccCCCCchHHHHHHH----HH------------------
Q 006411 411 DDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR---SPGKGLLLFGPPIGEGEKLVRA----LF------------------ 465 (646)
Q Consensus 411 dDIgGle~~K~~L~E~V~lPL~~pelf~~~~---~PprGVLLyGPPvGesek~Vr~----lF------------------ 465 (646)
.-|+|.+++...|...|..-- .++. +|-..+||.||.+-++....++ +|
T Consensus 491 ~rViGQd~AV~avs~aIrraR------aGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkH 564 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRAR------AGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKH 564 (786)
T ss_pred cceeChHHHHHHHHHHHHHHh------cCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHH
Confidence 457889999999888886621 2333 4445678889992222222222 22
Q ss_pred ----------------------HHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHH
Q 006411 466 ----------------------GVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKT 523 (646)
Q Consensus 466 ----------------------~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~riln 523 (646)
+..|.+..|||+||||+.-- ..|.+
T Consensus 565 sVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAH---------------------------------pdV~n 611 (786)
T COG0542 565 SVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAH---------------------------------PDVFN 611 (786)
T ss_pred HHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcC---------------------------------HHHHH
Confidence 12233456899999999542 24789
Q ss_pred HHHHHHcCCC--CC------CCcEEEEEecCCCC----------------------------cCCHHHHhccccEEEeCC
Q 006411 524 QFLIEMEGFD--SG------SEQILLVGATNRPQ----------------------------ELDEAARRRLTKRLYIPL 567 (646)
Q Consensus 524 eLL~eLDGl~--~~------~~~VlVIaATNrPd----------------------------~LDpALlRRFDr~I~Ipl 567 (646)
-||+-||.=. .+ =.+.+||||||-=. ..-|.++.|+|.+|.|..
T Consensus 612 ilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~ 691 (786)
T COG0542 612 LLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNP 691 (786)
T ss_pred HHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccC
Confidence 9999888321 11 13589999999621 123445559998888877
Q ss_pred CCCCCcHHHHHHHHH
Q 006411 568 PSSGYSGSDMKNLVK 582 (646)
Q Consensus 568 Pd~GySGADL~~Lc~ 582 (646)
.+. .+|..+|.
T Consensus 692 L~~----~~l~~Iv~ 702 (786)
T COG0542 692 LSK----EVLERIVD 702 (786)
T ss_pred CCH----HHHHHHHH
Confidence 554 55555554
|
|
| >KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.43 Score=51.82 Aligned_cols=119 Identities=18% Similarity=0.246 Sum_probs=75.2
Q ss_pred ccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCC---------------Cc-----------
Q 006411 402 MDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP---------------IG----------- 455 (646)
Q Consensus 402 ~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPP---------------vG----------- 455 (646)
...+++-+.+|+++-+++...+.+....+ ..| ..|+|||| .+
T Consensus 32 vekyrP~~l~dv~~~~ei~st~~~~~~~~-----------~lP-h~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lel 99 (360)
T KOG0990|consen 32 VEKYRPPFLGIVIKQEPIWSTENRYSGMP-----------GLP-HLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLEL 99 (360)
T ss_pred ccCCCCchhhhHhcCCchhhHHHHhccCC-----------CCC-cccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHh
Confidence 45677778889999998888888874331 111 66777777 00
Q ss_pred --------hHHHHHHHHHHHhhh-------cCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHH
Q 006411 456 --------EGEKLVRALFGVASC-------RQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRR 520 (646)
Q Consensus 456 --------esek~Vr~lF~~Ar~-------~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~r 520 (646)
...+.=-..|..++. ..+..|++||.|++...
T Consensus 100 naSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~--------------------------------- 146 (360)
T KOG0990|consen 100 NASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRD--------------------------------- 146 (360)
T ss_pred hccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhHH---------------------------------
Confidence 001111234666653 36889999999998640
Q ss_pred HHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCC
Q 006411 521 LKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLP 568 (646)
Q Consensus 521 ilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplP 568 (646)
.-|+|-..+..+. .++-++.-.|.|..+-||++.||.+-=+=|++
T Consensus 147 AQnALRRviek~t---~n~rF~ii~n~~~ki~pa~qsRctrfrf~pl~ 191 (360)
T KOG0990|consen 147 AQNALRRVIEKYT---ANTRFATISNPPQKIHPAQQSRCTRFRFAPLT 191 (360)
T ss_pred HHHHHHHHHHHhc---cceEEEEeccChhhcCchhhcccccCCCCCCC
Confidence 1122222333333 35666677899999999999988775555555
|
|
| >PRK06871 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.29 Score=53.03 Aligned_cols=49 Identities=12% Similarity=0.094 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 518 SRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 518 s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
+....|.||..|+.- .+++++|.+|+.|+.|-|.+++|.-. +.|++|+.
T Consensus 120 ~~~AaNaLLKtLEEP---p~~~~fiL~t~~~~~llpTI~SRC~~-~~~~~~~~ 168 (325)
T PRK06871 120 TEAAANALLKTLEEP---RPNTYFLLQADLSAALLPTIYSRCQT-WLIHPPEE 168 (325)
T ss_pred CHHHHHHHHHHhcCC---CCCeEEEEEECChHhCchHHHhhceE-EeCCCCCH
Confidence 345678899988874 34788899999999999999998854 56777654
|
|
| >TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D | Back alignment and domain information |
|---|
Probab=94.04 E-value=1.4 Score=51.39 Aligned_cols=110 Identities=12% Similarity=0.074 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHcCC---------CC-CCCcEEEEEecCCCC---cCCHHHHhccccEEEeCCCCCCCcHHHHHHHHHHHh
Q 006411 519 RRLKTQFLIEMEGF---------DS-GSEQILLVGATNRPQ---ELDEAARRRLTKRLYIPLPSSGYSGSDMKNLVKEAS 585 (646)
Q Consensus 519 ~rilneLL~eLDGl---------~~-~~~~VlVIaATNrPd---~LDpALlRRFDr~I~IplPd~GySGADL~~Lc~eAa 585 (646)
..+.+.|+..|+.- .. ....+.||+|+|..+ .|.++++.||+-+|.+..|.. ..+-..+++...
T Consensus 98 ~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~---~~er~eil~~~~ 174 (589)
T TIGR02031 98 DGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVAS---QDLRVEIVRRER 174 (589)
T ss_pred HHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCCC---HHHHHHHHHHHH
Confidence 34667777777521 11 113578899888765 799999999999888876542 222233333321
Q ss_pred hhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCC-CCCHHHHHHHHHHHHHhCC
Q 006411 586 MGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRA-SVSLNELGIYEEWNKQFGS 643 (646)
Q Consensus 586 ~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrP-Svs~~dl~~ye~w~k~fg~ 643 (646)
..... . ......+..+++..|-+.++. .++.+.++.+.+..-.+|.
T Consensus 175 -~~~~~---~--------~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv 221 (589)
T TIGR02031 175 -CNEVF---R--------MNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGI 221 (589)
T ss_pred -Hhhhh---h--------cchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCC
Confidence 00000 0 001123455666665544432 2455555566666555553
|
This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea. |
| >PRK06090 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.32 Score=52.49 Aligned_cols=49 Identities=16% Similarity=0.179 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 518 SRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 518 s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
.....|.||..|+.-. +++++|..|+.|+.|-|.+++|.- .+.|+.|+.
T Consensus 121 ~~~AaNaLLKtLEEPp---~~t~fiL~t~~~~~lLpTI~SRCq-~~~~~~~~~ 169 (319)
T PRK06090 121 NESASNALLKTLEEPA---PNCLFLLVTHNQKRLLPTIVSRCQ-QWVVTPPST 169 (319)
T ss_pred CHHHHHHHHHHhcCCC---CCeEEEEEECChhhChHHHHhcce-eEeCCCCCH
Confidence 3456788999998743 478999999999999999999985 567888865
|
|
| >COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.45 Score=53.91 Aligned_cols=42 Identities=19% Similarity=0.245 Sum_probs=30.8
Q ss_pred cCCHHHHhccccEEEeCCCCC---------CCcHHHHHHHHHHHhhhHHHH
Q 006411 550 ELDEAARRRLTKRLYIPLPSS---------GYSGSDMKNLVKEASMGPLRE 591 (646)
Q Consensus 550 ~LDpALlRRFDr~I~IplPd~---------GySGADL~~Lc~eAa~~Airr 591 (646)
.|...+++|||..++++.++. |-+++.++.-+-.|-...+.|
T Consensus 361 klSgp~lDRiDl~vev~~~~~~e~~~~~~~~ess~~v~~rVa~AR~~Q~~R 411 (490)
T COG0606 361 KLSGPFLDRIDLMVEVPRLSAGELIRQVPTGESSAGVRERVAKAREAQIAR 411 (490)
T ss_pred HhhHHHHhhhhheecccCCCHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 345557779999999999873 557788888887666554444
|
|
| >KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.29 Score=57.91 Aligned_cols=50 Identities=12% Similarity=0.104 Sum_probs=34.9
Q ss_pred EEEEecCCCCcCCHHHHh--ccccEEEeCCCCCCCcHHHHHHHHHHHhhhHHHH
Q 006411 540 LLVGATNRPQELDEAARR--RLTKRLYIPLPSSGYSGSDMKNLVKEASMGPLRE 591 (646)
Q Consensus 540 lVIaATNrPd~LDpALlR--RFDr~I~IplPd~GySGADL~~Lc~eAa~~Airr 591 (646)
-||+.+|.... |||+- -|...|+|+.|..---..-|+.||..-.|.+=-.
T Consensus 440 PIICICNdLYa--PaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE~mr~d~~ 491 (877)
T KOG1969|consen 440 PIICICNDLYA--PALRPLRPFAEIIAFVPPSQSRLVERLNEICHRENMRADSK 491 (877)
T ss_pred CEEEEecCccc--hhhhhcccceEEEEecCCChhHHHHHHHHHHhhhcCCCCHH
Confidence 47888896654 78876 6889999999876444456777776666554333
|
|
| >PRK04132 replication factor C small subunit; Provisional | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.89 Score=55.10 Aligned_cols=76 Identities=18% Similarity=0.245 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhhhcCC------eeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcC
Q 006411 458 EKLVRALFGVASCRQP------AVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEG 531 (646)
Q Consensus 458 ek~Vr~lF~~Ar~~aP------sIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDG 531 (646)
-..||.+.+.+....| -||||||+|.|-. ...+.|+..|+.
T Consensus 610 id~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt~---------------------------------~AQnALLk~lEe 656 (846)
T PRK04132 610 INVIREKVKEFARTKPIGGASFKIIFLDEADALTQ---------------------------------DAQQALRRTMEM 656 (846)
T ss_pred HHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCCH---------------------------------HHHHHHHHHhhC
Confidence 4567777665543332 5999999998832 135678888877
Q ss_pred CCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 532 FDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 532 l~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
.. .++.+|++||.+..|-+++++|+ ..+.|+.|+.
T Consensus 657 p~---~~~~FILi~N~~~kIi~tIrSRC-~~i~F~~ls~ 691 (846)
T PRK04132 657 FS---SNVRFILSCNYSSKIIEPIQSRC-AIFRFRPLRD 691 (846)
T ss_pred CC---CCeEEEEEeCChhhCchHHhhhc-eEEeCCCCCH
Confidence 54 36889999999999999999997 5567877763
|
|
| >PRK09862 putative ATP-dependent protease; Provisional | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.4 Score=54.93 Aligned_cols=46 Identities=33% Similarity=0.406 Sum_probs=34.9
Q ss_pred CcEEEEEecCCCC---------------------cCCHHHHhccccEEEeCCCCC---------CCcHHHHHHHHH
Q 006411 537 EQILLVGATNRPQ---------------------ELDEAARRRLTKRLYIPLPSS---------GYSGSDMKNLVK 582 (646)
Q Consensus 537 ~~VlVIaATNrPd---------------------~LDpALlRRFDr~I~IplPd~---------GySGADL~~Lc~ 582 (646)
.++.+|+|+|... .|..+++.|||-++.++.|+. +.+-++|..-+.
T Consensus 336 a~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~~l~~~~~~~ess~~i~~rV~ 411 (506)
T PRK09862 336 ARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKTVVPGESSATVKQRVM 411 (506)
T ss_pred CCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHHHHhcccCCCCChHHHHHHHh
Confidence 4689999999742 478899999999999999852 556666664443
|
|
| >PRK07276 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=93.10 E-value=0.48 Score=50.64 Aligned_cols=44 Identities=16% Similarity=0.166 Sum_probs=35.0
Q ss_pred HHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCC
Q 006411 521 LKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLP 568 (646)
Q Consensus 521 ilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplP 568 (646)
..|.||..|+.-. .++++|.+|+.++.|=|.+++|. .+|.|+.+
T Consensus 120 AaNaLLKtLEEPp---~~t~~iL~t~~~~~lLpTI~SRc-q~i~f~~~ 163 (290)
T PRK07276 120 AANSLLKVIEEPQ---SEIYIFLLTNDENKVLPTIKSRT-QIFHFPKN 163 (290)
T ss_pred HHHHHHHHhcCCC---CCeEEEEEECChhhCchHHHHcc-eeeeCCCc
Confidence 4688998888743 46888899999999999999998 44567654
|
|
| >PRK11608 pspF phage shock protein operon transcriptional activator; Provisional | Back alignment and domain information |
|---|
Probab=92.93 E-value=1.2 Score=47.92 Aligned_cols=50 Identities=22% Similarity=0.160 Sum_probs=35.2
Q ss_pred cccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhh
Q 006411 410 WDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVAS 469 (646)
Q Consensus 410 fdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar 469 (646)
+++++|-....+.+.+.+..-. .-..-|||+|+++.+++...+.+.....
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a----------~~~~pVlI~GE~GtGK~~lA~~iH~~s~ 54 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLA----------PLDKPVLIIGERGTGKELIASRLHYLSS 54 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCcHHHHHHHHHHhCC
Confidence 5778888888777777776522 1235699999997777777777765543
|
|
| >COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.00 E-value=0.19 Score=54.62 Aligned_cols=131 Identities=24% Similarity=0.377 Sum_probs=72.8
Q ss_pred ccChHHHHHHHHHHHHhhccCcccccc---CCCCCccccccCCC--------------------------------CchH
Q 006411 413 IAGLEHAKKCVMEMVIWPLLRPDIFKG---CRSPGKGLLLFGPP--------------------------------IGEG 457 (646)
Q Consensus 413 IgGle~~K~~L~E~V~lPL~~pelf~~---~~~PprGVLLyGPP--------------------------------vGes 457 (646)
|+|.+.+|+.|.=+|....++-..... .--....|||.||. +||-
T Consensus 63 VIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGED 142 (408)
T COG1219 63 VIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGED 142 (408)
T ss_pred eecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchh
Confidence 678888888775555432221111100 11223689999999 4443
Q ss_pred -HHHHHHHHHHh----hhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCC
Q 006411 458 -EKLVRALFGVA----SCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGF 532 (646)
Q Consensus 458 -ek~Vr~lF~~A----r~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl 532 (646)
|..+-.+.+.| .+.+.-||||||||.|+.+- ...+-.|.. +..-+...||..|+|-
T Consensus 143 VENillkLlqaadydV~rAerGIIyIDEIDKIarkS--------------eN~SITRDV-----SGEGVQQALLKiiEGT 203 (408)
T COG1219 143 VENILLKLLQAADYDVERAERGIIYIDEIDKIARKS--------------ENPSITRDV-----SGEGVQQALLKIIEGT 203 (408)
T ss_pred HHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccC--------------CCCCccccc-----CchHHHHHHHHHHcCc
Confidence 44455554433 12346799999999998620 000001211 2235778899999986
Q ss_pred CC----------CCCcEEEEEecCCC-------CcCCHHHHhccccE
Q 006411 533 DS----------GSEQILLVGATNRP-------QELDEAARRRLTKR 562 (646)
Q Consensus 533 ~~----------~~~~VlVIaATNrP-------d~LDpALlRRFDr~ 562 (646)
-. +....+.|-|||-. ..||.-+.+|..+.
T Consensus 204 vasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~ 250 (408)
T COG1219 204 VASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKK 250 (408)
T ss_pred eeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHHHhccCC
Confidence 42 12235555555543 45676666677543
|
|
| >TIGR02974 phageshock_pspF psp operon transcriptional activator PspF | Back alignment and domain information |
|---|
Probab=91.70 E-value=1.3 Score=47.83 Aligned_cols=45 Identities=22% Similarity=0.237 Sum_probs=27.4
Q ss_pred CcEEEEEecCCC-------CcCCHHHHhccc-cEEEeCCCCCCCcHHHHHHHHHH
Q 006411 537 EQILLVGATNRP-------QELDEAARRRLT-KRLYIPLPSSGYSGSDMKNLVKE 583 (646)
Q Consensus 537 ~~VlVIaATNrP-------d~LDpALlRRFD-r~I~IplPd~GySGADL~~Lc~e 583 (646)
.+|-||+|||.. ..+.+.|..||. ..|.+|+..+ -..||..|++.
T Consensus 133 ~~~RiI~at~~~l~~~~~~g~fr~dL~~rl~~~~i~lPpLRe--R~eDI~~L~~~ 185 (329)
T TIGR02974 133 VDVRLVCATNADLPALAAEGRFRADLLDRLAFDVITLPPLRE--RQEDIMLLAEH 185 (329)
T ss_pred cceEEEEechhhHHHHhhcCchHHHHHHHhcchhcCCCchhh--hhhhHHHHHHH
Confidence 358899999874 245567777884 4566665543 23455555544
|
Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH |
| >TIGR01817 nifA Nif-specific regulatory protein | Back alignment and domain information |
|---|
Probab=91.59 E-value=1.8 Score=49.33 Aligned_cols=55 Identities=18% Similarity=0.136 Sum_probs=40.3
Q ss_pred CCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhh
Q 006411 405 DPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVAS 469 (646)
Q Consensus 405 ~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar 469 (646)
.+..++++|+|-....+.+.+.+.... ....-|||+|+++.+++...+.+.....
T Consensus 190 ~~~~~~~~liG~s~~~~~~~~~~~~~a----------~~~~pvli~Ge~GtGK~~lA~~ih~~s~ 244 (534)
T TIGR01817 190 RRSGKEDGIIGKSPAMRQVVDQARVVA----------RSNSTVLLRGESGTGKELIAKAIHYLSP 244 (534)
T ss_pred cccCccCceEECCHHHHHHHHHHHHHh----------CcCCCEEEECCCCccHHHHHHHHHHhCC
Confidence 445789999998888888888776622 1235699999997777777777766554
|
This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. |
| >PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional | Back alignment and domain information |
|---|
Probab=91.02 E-value=1.4 Score=50.81 Aligned_cols=50 Identities=14% Similarity=0.116 Sum_probs=38.3
Q ss_pred cccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHH
Q 006411 408 VRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGV 467 (646)
Q Consensus 408 VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~ 467 (646)
.+|++|+|-....+.+++.+...- .....|||+|+++.+++...+.+...
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A----------~s~~pVLI~GE~GTGKe~~A~~IH~~ 265 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYA----------RSSAAVLIQGETGTGKELAAQAIHRE 265 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCCCHHHHHHHHHHh
Confidence 468999999988888888876511 12357999999977777777777765
|
|
| >PRK05917 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=90.79 E-value=2.1 Score=45.80 Aligned_cols=60 Identities=22% Similarity=0.275 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC-CCcHHHHHHHH
Q 006411 518 SRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS-GYSGSDMKNLV 581 (646)
Q Consensus 518 s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~-GySGADL~~Lc 581 (646)
+....|.||..|+.-. +++++|..|+.++.|-|.+++|+-.. .|+.+.. +.+..++..+.
T Consensus 108 t~~AaNaLLK~LEEPp---~~~~fiL~~~~~~~ll~TI~SRcq~~-~~~~~~~~~i~~~~~~~l~ 168 (290)
T PRK05917 108 TLDAISAFLKVLEDPP---QHGVIILTSAKPQRLPPTIRSRSLSI-HIPMEEKTLVSKEDIAYLI 168 (290)
T ss_pred CHHHHHHHHHHhhcCC---CCeEEEEEeCChhhCcHHHHhcceEE-EccchhccCCCHHHHHHHH
Confidence 3456789999998843 47888889999999999999987543 5555443 45555544433
|
|
| >TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR | Back alignment and domain information |
|---|
Probab=90.73 E-value=2.3 Score=49.02 Aligned_cols=59 Identities=20% Similarity=0.235 Sum_probs=41.7
Q ss_pred CcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHh-hhcCCee
Q 006411 407 HVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVA-SCRQPAV 475 (646)
Q Consensus 407 ~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~A-r~~aPsI 475 (646)
..+|++|+|.....+.+.+.+...- .....|||+|+++.+++...+.+.... +...|-|
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~i~~~A----------~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv 267 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRALVRLYA----------RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFV 267 (526)
T ss_pred ccchhheeeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEE
Confidence 3678999999988888888775511 123579999999777777777777655 3334433
|
At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR. |
| >TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
Probab=90.70 E-value=2 Score=43.66 Aligned_cols=20 Identities=25% Similarity=0.320 Sum_probs=15.2
Q ss_pred HHhhhcCCeeeeehhhhHHh
Q 006411 466 GVASCRQPAVIFVDEIDSLL 485 (646)
Q Consensus 466 ~~Ar~~aPsIIFIDEIDsL~ 485 (646)
.......+.||+|||++.+-
T Consensus 117 ~~~~~~~~~vliiDe~~~l~ 136 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQNLT 136 (269)
T ss_pred HHHhCCCCeEEEEECcccCC
Confidence 34456678899999999764
|
Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems. |
| >PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP | Back alignment and domain information |
|---|
Probab=90.44 E-value=0.34 Score=53.13 Aligned_cols=23 Identities=48% Similarity=0.995 Sum_probs=16.2
Q ss_pred CCCccccccCCCCchHHHHHHHHH
Q 006411 442 SPGKGLLLFGPPIGEGEKLVRALF 465 (646)
Q Consensus 442 ~PprGVLLyGPPvGesek~Vr~lF 465 (646)
.+|+|+.||||+ |-+..++.++|
T Consensus 60 ~~~~GlYl~G~v-G~GKT~Lmd~f 82 (362)
T PF03969_consen 60 PPPKGLYLWGPV-GRGKTMLMDLF 82 (362)
T ss_pred CCCceEEEECCC-CCchhHHHHHH
Confidence 568999999998 54555554444
|
AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding |
| >PTZ00111 DNA replication licensing factor MCM4; Provisional | Back alignment and domain information |
|---|
Probab=89.86 E-value=1.8 Score=52.71 Aligned_cols=34 Identities=6% Similarity=0.048 Sum_probs=25.6
Q ss_pred CcEEEEEecCCC-------------CcCCHHHHhccccEEE-eCCCCC
Q 006411 537 EQILLVGATNRP-------------QELDEAARRRLTKRLY-IPLPSS 570 (646)
Q Consensus 537 ~~VlVIaATNrP-------------d~LDpALlRRFDr~I~-IplPd~ 570 (646)
.++-||||+|-. -.|.++|+.|||-.+. ++.|+.
T Consensus 599 ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~ 646 (915)
T PTZ00111 599 AETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQ 646 (915)
T ss_pred CCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCCh
Confidence 478999999964 2578999999997743 456664
|
|
| >KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.97 E-value=0.9 Score=51.28 Aligned_cols=95 Identities=25% Similarity=0.365 Sum_probs=57.5
Q ss_pred hHHHHHHHHHHHhh----hcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcC
Q 006411 456 EGEKLVRALFGVAS----CRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEG 531 (646)
Q Consensus 456 esek~Vr~lF~~Ar----~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDG 531 (646)
+-|..|..+...|. +.+--||||||+|.|..+ .++. +. .|...+ .-+...||..++|
T Consensus 271 DVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~-~~~i-------~~------~RDVsG-----EGVQQaLLKllEG 331 (564)
T KOG0745|consen 271 DVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK-AESI-------HT------SRDVSG-----EGVQQALLKLLEG 331 (564)
T ss_pred cHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc-Cccc-------cc------cccccc-----hhHHHHHHHHhcc
Confidence 34777888877663 346779999999999851 1111 11 122222 3466778888886
Q ss_pred CC----------CCCCcEEEEEecCCC-------CcCCHHHHhccc-cEEEeCCCC
Q 006411 532 FD----------SGSEQILLVGATNRP-------QELDEAARRRLT-KRLYIPLPS 569 (646)
Q Consensus 532 l~----------~~~~~VlVIaATNrP-------d~LDpALlRRFD-r~I~IplPd 569 (646)
-- ...+..+.|-|||-. -.||.-+-||.+ +.+=|..|+
T Consensus 332 tvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~d~slGFg~~s 387 (564)
T KOG0745|consen 332 TVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLDDKSLGFGAPS 387 (564)
T ss_pred cEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHHhhcchhcccCCCC
Confidence 52 112335555555543 467888888664 566677774
|
|
| >PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor | Back alignment and domain information |
|---|
Probab=88.96 E-value=1.2 Score=43.61 Aligned_cols=54 Identities=22% Similarity=0.171 Sum_probs=29.5
Q ss_pred ccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhh-hcCCeee
Q 006411 413 IAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVAS-CRQPAVI 476 (646)
Q Consensus 413 IgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar-~~aPsII 476 (646)
|+|-....+.+.+.+..-. ..+.-|||+|+++.+++...+.+.+... ..+|-|.
T Consensus 1 liG~s~~m~~~~~~~~~~a----------~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~ 55 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAA----------SSDLPVLITGETGTGKELLARAIHNNSPRKNGPFIS 55 (168)
T ss_dssp SS--SHHHHHHHHHHHHHT----------TSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEE
T ss_pred CEeCCHHHHHHHHHHHHHh----------CCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEE
Confidence 3454555555555554421 1236799999997777777777776543 3345443
|
These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A .... |
| >PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional | Back alignment and domain information |
|---|
Probab=88.94 E-value=4.4 Score=46.20 Aligned_cols=51 Identities=14% Similarity=0.162 Sum_probs=37.0
Q ss_pred ccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhh
Q 006411 409 RWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVAS 469 (646)
Q Consensus 409 sfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar 469 (646)
++++|+|-....+.+.+.+..- ......|||+|+++.+++...+.+.....
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~----------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~ 235 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVV----------AASDLNVLILGETGVGKELVARAIHAASP 235 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHH----------hCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 5789999888888888877661 12246799999996666666666666544
|
|
| >PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional | Back alignment and domain information |
|---|
Probab=88.78 E-value=3.3 Score=48.85 Aligned_cols=63 Identities=16% Similarity=0.245 Sum_probs=43.4
Q ss_pred CcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhcCCeeeeeh
Q 006411 407 HVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCRQPAVIFVD 479 (646)
Q Consensus 407 ~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~aPsIIFID 479 (646)
+.+|++++|-....+.+.+.+..-. .....|||+|+++.+++...+.+...+......+++||
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~~a----------~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~ 434 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMVA----------QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMN 434 (686)
T ss_pred cccccceeecCHHHHHHHHHHHHHh----------CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEe
Confidence 4678899999888888887776521 12356999999977777777777766643333344443
|
|
| >KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=88.69 E-value=2.6 Score=46.42 Aligned_cols=57 Identities=19% Similarity=0.294 Sum_probs=36.7
Q ss_pred HHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHh---ccccE-EEeCCCCCCCcHHHHHHHHHHH
Q 006411 525 FLIEMEGFDSGSEQILLVGATNRPQELDEAARR---RLTKR-LYIPLPSSGYSGSDMKNLVKEA 584 (646)
Q Consensus 525 LL~eLDGl~~~~~~VlVIaATNrPd~LDpALlR---RFDr~-I~IplPd~GySGADL~~Lc~eA 584 (646)
|-+..|-..+....|.|||.|.+.+.++---.| ||..+ |+++.|-. -.|...+|++-
T Consensus 158 lYnlfDisqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~---l~~yv~l~r~l 218 (408)
T KOG2228|consen 158 LYNLFDISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLP---LGDYVDLYRKL 218 (408)
T ss_pred HHHHHHHHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCC---hHHHHHHHHHH
Confidence 334455544445689999999999988766555 99988 66555432 34444444443
|
|
| >PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A | Back alignment and domain information |
|---|
Probab=87.76 E-value=1.8 Score=45.52 Aligned_cols=33 Identities=33% Similarity=0.442 Sum_probs=21.1
Q ss_pred CcEEEEEecCCCC---cCCHHHHhccccEEEeCCCCC
Q 006411 537 EQILLVGATNRPQ---ELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 537 ~~VlVIaATNrPd---~LDpALlRRFDr~I~IplPd~ 570 (646)
.+|.+|+|.|-+. .|++.++|.|- .+.++.|+.
T Consensus 147 ~~i~~vaa~~p~~Gr~~is~R~~r~f~-i~~~~~p~~ 182 (272)
T PF12775_consen 147 EDIQFVAAMNPTGGRNPISPRFLRHFN-ILNIPYPSD 182 (272)
T ss_dssp CSEEEEEEESSTTT--SHHHHHHTTEE-EEE----TC
T ss_pred eeeEEEEecCCCCCCCCCChHHhhheE-EEEecCCCh
Confidence 4588889988433 47888888774 688999986
|
|
| >KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.66 E-value=1.8 Score=52.63 Aligned_cols=98 Identities=14% Similarity=0.187 Sum_probs=65.2
Q ss_pred ccccChHHHHHHHHHHHHhhccCccccccCC--CCCccccccCCCCchHH------------------------------
Q 006411 411 DDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR--SPGKGLLLFGPPIGEGE------------------------------ 458 (646)
Q Consensus 411 dDIgGle~~K~~L~E~V~lPL~~pelf~~~~--~PprGVLLyGPPvGese------------------------------ 458 (646)
+.|+|.+++...|-++|...-. ++. .|.--+||.||.+.++.
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~------gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evsk 635 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRA------GLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSK 635 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhc------ccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhh
Confidence 4688999999999999877432 232 35677889999922222
Q ss_pred -----------HHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHH
Q 006411 459 -----------KLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLI 527 (646)
Q Consensus 459 -----------k~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~ 527 (646)
.....+.+..+...-|||||||||.--+ .+.+.|+.
T Consensus 636 ligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh~---------------------------------~v~n~llq 682 (898)
T KOG1051|consen 636 LIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHP---------------------------------DVLNILLQ 682 (898)
T ss_pred ccCCCcccccchhHHHHHHHHhcCCceEEEEechhhcCH---------------------------------HHHHHHHH
Confidence 2334556666666778999999984322 35677777
Q ss_pred HHcCCCC--------CCCcEEEEEecCC
Q 006411 528 EMEGFDS--------GSEQILLVGATNR 547 (646)
Q Consensus 528 eLDGl~~--------~~~~VlVIaATNr 547 (646)
.||.-.- .-.+++||||.|.
T Consensus 683 ~lD~GrltDs~Gr~Vd~kN~I~IMTsn~ 710 (898)
T KOG1051|consen 683 LLDRGRLTDSHGREVDFKNAIFIMTSNV 710 (898)
T ss_pred HHhcCccccCCCcEeeccceEEEEeccc
Confidence 7774421 1256999999876
|
|
| >PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H | Back alignment and domain information |
|---|
Probab=87.00 E-value=2.2 Score=39.69 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=14.5
Q ss_pred ccccccCCCCchHHHHHHHHHHH
Q 006411 445 KGLLLFGPPIGEGEKLVRALFGV 467 (646)
Q Consensus 445 rGVLLyGPPvGesek~Vr~lF~~ 467 (646)
.-|||+|+|+.+.....+.+...
T Consensus 22 ~pvli~GE~GtGK~~~A~~lh~~ 44 (138)
T PF14532_consen 22 SPVLITGEPGTGKSLLARALHRY 44 (138)
T ss_dssp S-EEEECCTTSSHHHHHHCCHHT
T ss_pred CcEEEEcCCCCCHHHHHHHHHhh
Confidence 56999999955555555555443
|
|
| >KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=86.84 E-value=3.3 Score=47.71 Aligned_cols=132 Identities=20% Similarity=0.254 Sum_probs=76.6
Q ss_pred cccChHHHHHHHHHHHHhhccCccccccCC---CCCccccccCCCCchHHHHHHHHHHHhhhcC----------------
Q 006411 412 DIAGLEHAKKCVMEMVIWPLLRPDIFKGCR---SPGKGLLLFGPPIGEGEKLVRALFGVASCRQ---------------- 472 (646)
Q Consensus 412 DIgGle~~K~~L~E~V~lPL~~pelf~~~~---~PprGVLLyGPPvGesek~Vr~lF~~Ar~~a---------------- 472 (646)
+|.|.+++|+.|.-.+.- .++--.+-| +-.-.|+|.|-|+-.+...++.+-..|....
T Consensus 343 EIyGheDVKKaLLLlLVG---gvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSSGVGLTAAV 419 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVG---GVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSSGVGLTAAV 419 (721)
T ss_pred hhccchHHHHHHHHHhhC---CCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCCccccchhh
Confidence 588999999987544322 222211112 2234599999996666677777777664331
Q ss_pred -------------C-------eeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCC
Q 006411 473 -------------P-------AVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGF 532 (646)
Q Consensus 473 -------------P-------sIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl 532 (646)
. -|-.|||+|.+... .| ..-|+.+.+ .+.-..=-|+
T Consensus 420 mkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~--------------------DR--tAIHEVMEQ--QTISIaKAGI 475 (721)
T KOG0482|consen 420 MKDPVTGEMVLEGGALVLADGGICCIDEFDKMDES--------------------DR--TAIHEVMEQ--QTISIAKAGI 475 (721)
T ss_pred hcCCCCCeeEeccceEEEccCceEeehhhhhhhhh--------------------hh--HHHHHHHHh--hhhhhhhhcc
Confidence 1 15669999998761 11 122332110 0011111233
Q ss_pred CC-CCCcEEEEEecCCCC-------------cCCHHHHhccccEEEe-CCCCC
Q 006411 533 DS-GSEQILLVGATNRPQ-------------ELDEAARRRLTKRLYI-PLPSS 570 (646)
Q Consensus 533 ~~-~~~~VlVIaATNrPd-------------~LDpALlRRFDr~I~I-plPd~ 570 (646)
.+ .+.+.-|++|+|-.+ .|+.||++|||-.+.+ ..||.
T Consensus 476 ~TtLNAR~sILaAANPayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdr 528 (721)
T KOG0482|consen 476 NTTLNARTSILAAANPAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDR 528 (721)
T ss_pred ccchhhhHHhhhhcCccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcc
Confidence 32 245678889998654 6899999999976554 56654
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=86.68 E-value=11 Score=47.28 Aligned_cols=66 Identities=18% Similarity=0.289 Sum_probs=49.6
Q ss_pred CCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhcCCeeeeehh
Q 006411 405 DPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCRQPAVIFVDE 480 (646)
Q Consensus 405 ~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~aPsIIFIDE 480 (646)
.+...+++++|++...++|.+.+.+- ....+-|-++||++-++...++.+|......-...+|+|.
T Consensus 178 ~~~~~~~~~vG~~~~l~~l~~lL~l~----------~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~ 243 (1153)
T PLN03210 178 TPSNDFEDFVGIEDHIAKMSSLLHLE----------SEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDR 243 (1153)
T ss_pred ccCcccccccchHHHHHHHHHHHccc----------cCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeec
Confidence 34567889999999999988776431 1224678899999888888999999987765556677765
|
syringae 6; Provisional |
| >COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.48 E-value=6.6 Score=44.03 Aligned_cols=159 Identities=16% Similarity=0.190 Sum_probs=81.8
Q ss_pred CCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHh-h-hcCCeeeeehhhh
Q 006411 405 DPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVA-S-CRQPAVIFVDEID 482 (646)
Q Consensus 405 ~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~A-r-~~aPsIIFIDEID 482 (646)
.....+++++|-...-++++|.+.. |.. -...||++|+++.+++...+.+-... + ..+|-|-| +.-
T Consensus 72 ~~~~~~~~LIG~~~~~~~~~eqik~-------~ap---~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~--NCa 139 (403)
T COG1221 72 LKSEALDDLIGESPSLQELREQIKA-------YAP---SGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAF--NCA 139 (403)
T ss_pred ccchhhhhhhccCHHHHHHHHHHHh-------hCC---CCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEE--EHH
Confidence 3456689999988888888887766 111 13569999999666665555554333 3 34554443 111
Q ss_pred HHhhhcccccccchhhhhhhhhhcccc--C---------CC------CCchhhHHHHHHHHHHHcC-----CCC---CCC
Q 006411 483 SLLSQMLPYMHVHHIKLFCLKRFYFQR--K---------SD------GEHESSRRLKTQFLIEMEG-----FDS---GSE 537 (646)
Q Consensus 483 sL~~k~~~~~~~~~~~~~~~kr~~~~R--~---------s~------~~~e~s~rilneLL~eLDG-----l~~---~~~ 537 (646)
.+.. +. ....+|.-+...+.. . ++ .-+.-.-.....|+..||. +.. ...
T Consensus 140 ~~~e----n~--~~~eLFG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~ 213 (403)
T COG1221 140 AYSE----NL--QEAELFGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPV 213 (403)
T ss_pred HhCc----CH--HHHHHhccccceeecccCCcCchheecCCCEEehhhhhhCCHhHHHHHHHHHHcCceEecCCCCCcCC
Confidence 1110 00 000011111111100 0 00 0111122334456666664 222 234
Q ss_pred cEEEEEecCCCCcCCHHHHh-------ccccEEEeCCCCCCCcHHHHHHHHHHHh
Q 006411 538 QILLVGATNRPQELDEAARR-------RLTKRLYIPLPSSGYSGSDMKNLVKEAS 585 (646)
Q Consensus 538 ~VlVIaATNrPd~LDpALlR-------RFDr~I~IplPd~GySGADL~~Lc~eAa 585 (646)
.|.+|+||| ..++.+++. |+...|.+|+--+- ..||..++..-.
T Consensus 214 dVRli~AT~--~~l~~~~~~g~dl~~rl~~~~I~LPpLrER--~~Di~~L~e~Fl 264 (403)
T COG1221 214 DVRLICATT--EDLEEAVLAGADLTRRLNILTITLPPLRER--KEDILLLAEHFL 264 (403)
T ss_pred Cceeeeccc--cCHHHHHHhhcchhhhhcCceecCCChhhc--hhhHHHHHHHHH
Confidence 699999998 456666665 66777777776553 555555554433
|
|
| >PRK10820 DNA-binding transcriptional regulator TyrR; Provisional | Back alignment and domain information |
|---|
Probab=86.41 E-value=8.4 Score=44.20 Aligned_cols=54 Identities=15% Similarity=0.075 Sum_probs=36.1
Q ss_pred CCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHh
Q 006411 405 DPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVA 468 (646)
Q Consensus 405 ~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~A 468 (646)
....+|++++|-....+.+.+.+..-.. ...-|||+|+++.+++...+.+....
T Consensus 198 ~~~~~f~~~ig~s~~~~~~~~~~~~~A~----------~~~pvlI~GE~GtGK~~lA~aiH~~s 251 (520)
T PRK10820 198 NDDSAFSQIVAVSPKMRQVVEQARKLAM----------LDAPLLITGDTGTGKDLLAYACHLRS 251 (520)
T ss_pred cccccccceeECCHHHHHHHHHHHHHhC----------CCCCEEEECCCCccHHHHHHHHHHhC
Confidence 4567999999988877777666643111 12449999999666666666654433
|
|
| >PRK11388 DNA-binding transcriptional regulator DhaR; Provisional | Back alignment and domain information |
|---|
Probab=85.58 E-value=7.5 Score=45.37 Aligned_cols=61 Identities=11% Similarity=0.062 Sum_probs=40.7
Q ss_pred CCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhh-hcCCeee
Q 006411 406 PHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVAS-CRQPAVI 476 (646)
Q Consensus 406 p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar-~~aPsII 476 (646)
+..+|++|+|-....+.+.+.+..-.. ...-|||+|+++.+++...+.+..... ...|-|.
T Consensus 320 ~~~~~~~l~g~s~~~~~~~~~~~~~a~----------~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~ 381 (638)
T PRK11388 320 VSHTFDHMPQDSPQMRRLIHFGRQAAK----------SSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIA 381 (638)
T ss_pred ccccccceEECCHHHHHHHHHHHHHhC----------cCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEE
Confidence 456799999988887777776655221 124599999997777777777766543 3344443
|
|
| >KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=85.42 E-value=6.9 Score=44.79 Aligned_cols=50 Identities=24% Similarity=0.417 Sum_probs=35.5
Q ss_pred HHcCCCCCCCcEEEEEecCCCCcCCHHHHh-cc-----ccEEEeCCCCCCCcHHHHHHHHHH
Q 006411 528 EMEGFDSGSEQILLVGATNRPQELDEAARR-RL-----TKRLYIPLPSSGYSGSDMKNLVKE 583 (646)
Q Consensus 528 eLDGl~~~~~~VlVIaATNrPd~LDpALlR-RF-----Dr~I~IplPd~GySGADL~~Lc~e 583 (646)
+|+.+. +.++++||.+|..|.=|-.|.| .. .+.+.|++ ||..||..|+++
T Consensus 281 ewp~lp--~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~P----YTk~qI~~Il~~ 336 (529)
T KOG2227|consen 281 EWPKLP--NSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPP----YTKDQIVEILQQ 336 (529)
T ss_pred hcccCC--cceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecC----CCHHHHHHHHHH
Confidence 455543 4689999999999999988888 44 34555555 777777777653
|
|
| >PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model | Back alignment and domain information |
|---|
Probab=85.04 E-value=2.5 Score=40.45 Aligned_cols=40 Identities=20% Similarity=0.281 Sum_probs=21.9
Q ss_pred HHHHHHHHHHcCCC-------C-CCCcEEEEEecCCCC-----cCCHHHHhcc
Q 006411 520 RLKTQFLIEMEGFD-------S-GSEQILLVGATNRPQ-----ELDEAARRRL 559 (646)
Q Consensus 520 rilneLL~eLDGl~-------~-~~~~VlVIaATNrPd-----~LDpALlRRF 559 (646)
++.+.||..|..-. - ..+..+||||-|..+ .|++|++-||
T Consensus 77 ktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF 129 (131)
T PF07726_consen 77 KTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRF 129 (131)
T ss_dssp HHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTS
T ss_pred HHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhccc
Confidence 45566666665321 1 134589999999866 7888998887
|
AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A. |
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
Probab=84.97 E-value=2.2 Score=44.51 Aligned_cols=17 Identities=24% Similarity=0.528 Sum_probs=11.7
Q ss_pred CccccccCCCCchHHHH
Q 006411 444 GKGLLLFGPPIGEGEKL 460 (646)
Q Consensus 444 prGVLLyGPPvGesek~ 460 (646)
..+++|+|||+.++...
T Consensus 98 ~~nlll~Gp~GtGKThL 114 (254)
T PRK06526 98 KENVVFLGPPGTGKTHL 114 (254)
T ss_pred CceEEEEeCCCCchHHH
Confidence 47899999994443333
|
|
| >PRK05818 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=83.98 E-value=2.4 Score=44.80 Aligned_cols=49 Identities=8% Similarity=0.036 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 518 SRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 518 s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
.....|.||..|+.- ..++++|..|+.++.|-|.+++|.-. +.++.+..
T Consensus 101 ~~~AaNaLLK~LEEP---p~~t~fiLit~~~~~lLpTI~SRCq~-~~~~~~~~ 149 (261)
T PRK05818 101 NKQSANSLLKLIEEP---PKNTYGIFTTRNENNILNTILSRCVQ-YVVLSKEK 149 (261)
T ss_pred CHHHHHHHHHhhcCC---CCCeEEEEEECChHhCchHhhhheee-eecCChhh
Confidence 345678899888874 45789999999999999999999755 56777643
|
|
| >smart00763 AAA_PrkA PrkA AAA domain | Back alignment and domain information |
|---|
Probab=83.04 E-value=1.9 Score=47.50 Aligned_cols=56 Identities=25% Similarity=0.267 Sum_probs=42.9
Q ss_pred cc-cccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhc
Q 006411 410 WD-DIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCR 471 (646)
Q Consensus 410 fd-DIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~ 471 (646)
|+ ++.|+++++++|.+.+.... .+.....+.++|+|||++++...++.|-.....+
T Consensus 49 F~~~~~G~~~~i~~lv~~l~~~a------~g~~~~r~il~L~GPPGsGKStla~~La~~l~~y 105 (361)
T smart00763 49 FDHDFFGMEEAIERFVNYFKSAA------QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEY 105 (361)
T ss_pred cchhccCcHHHHHHHHHHHHHHH------hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 45 89999999999998876644 2233445789999999888888888887766553
|
This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain. |
| >PRK08699 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=82.80 E-value=3.7 Score=44.43 Aligned_cols=49 Identities=14% Similarity=0.275 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 518 SRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 518 s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
.....+.||..|+.... ++.+|.+|+.++.|-+.+++|+- .+.|+.|+.
T Consensus 126 d~~a~naLLk~LEep~~---~~~~Ilvth~~~~ll~ti~SRc~-~~~~~~~~~ 174 (325)
T PRK08699 126 NLQAANSLLKVLEEPPP---QVVFLLVSHAADKVLPTIKSRCR-KMVLPAPSH 174 (325)
T ss_pred CHHHHHHHHHHHHhCcC---CCEEEEEeCChHhChHHHHHHhh-hhcCCCCCH
Confidence 34567788888887643 46677799999999999998874 456777754
|
|
| >KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=82.03 E-value=17 Score=43.56 Aligned_cols=90 Identities=14% Similarity=0.268 Sum_probs=47.4
Q ss_pred HHHHHHHHh-hhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCCCCCc
Q 006411 460 LVRALFGVA-SCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQ 538 (646)
Q Consensus 460 ~Vr~lF~~A-r~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~~~~ 538 (646)
.+..-|... -+..|+||+|||+|.|+. .. +.|+--|.. |-. .++.+
T Consensus 495 ~L~~~f~~~k~~~~~~VvLiDElD~Lvt---------------------r~---------QdVlYn~fd-Wpt--~~~sK 541 (767)
T KOG1514|consen 495 ALNFRFTVPKPKRSTTVVLIDELDILVT---------------------RS---------QDVLYNIFD-WPT--LKNSK 541 (767)
T ss_pred HHHHhhccCCCCCCCEEEEeccHHHHhc---------------------cc---------HHHHHHHhc-CCc--CCCCc
Confidence 344444433 345799999999999987 11 224333332 222 23457
Q ss_pred EEEEEecCCCCcCCHHHHhccccEEEeCCCCC-CCcHHHHHHHHH
Q 006411 539 ILLVGATNRPQELDEAARRRLTKRLYIPLPSS-GYSGSDMKNLVK 582 (646)
Q Consensus 539 VlVIaATNrPd~LDpALlRRFDr~I~IplPd~-GySGADL~~Lc~ 582 (646)
++||+-.|.-+....-|.-|..-++-+..-.. .|+-..|..++.
T Consensus 542 Lvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~ 586 (767)
T KOG1514|consen 542 LVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIIS 586 (767)
T ss_pred eEEEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHH
Confidence 88888888765544333323332222221111 456566655553
|
|
| >TIGR01618 phage_P_loop phage nucleotide-binding protein | Back alignment and domain information |
|---|
Probab=81.37 E-value=4.7 Score=41.52 Aligned_cols=62 Identities=15% Similarity=0.120 Sum_probs=32.5
Q ss_pred CCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCCCCCcEEEEEec
Q 006411 472 QPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGAT 545 (646)
Q Consensus 472 aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~~~~VlVIaAT 545 (646)
...+|+||.|+.+.. .|. ...|... +. ...+...-..+.+.|+..|..+.+...+|++++-.
T Consensus 81 ~ydtVVIDsI~~l~~------~~~--~~~~r~~---k~-~~~~~~~yg~~~~~fl~~l~~L~~~g~nII~tAhe 142 (220)
T TIGR01618 81 KYDNIVIDNISALQN------LWL--ENIGRAA---KN-GQPELQHYQKLDLWFLDLLTVLKESNKNIYATAWE 142 (220)
T ss_pred cCCEEEEecHHHHHH------HHH--HHHhhhc---CC-CCcccccHHHHHHHHHHHHHHHHhCCCcEEEEEee
Confidence 467999999999865 111 1112111 11 11122233446666777666665544466666643
|
This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown. |
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=81.24 E-value=7.7 Score=35.20 Aligned_cols=27 Identities=19% Similarity=0.254 Sum_probs=21.6
Q ss_pred HHHHHHHHhhhcCCeeeeehhhhHHhh
Q 006411 460 LVRALFGVASCRQPAVIFVDEIDSLLS 486 (646)
Q Consensus 460 ~Vr~lF~~Ar~~aPsIIFIDEIDsL~~ 486 (646)
..+.++..+....|.+|+|||+..++.
T Consensus 73 ~~~~~~~~~~~~~~~~lviDe~~~~~~ 99 (165)
T cd01120 73 LLSKAERLRERGGDDLIILDELTRLVR 99 (165)
T ss_pred HHHHHHHHHhCCCCEEEEEEcHHHHHH
Confidence 334556677778899999999999986
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >PRK13406 bchD magnesium chelatase subunit D; Provisional | Back alignment and domain information |
|---|
Probab=81.11 E-value=21 Score=41.90 Aligned_cols=52 Identities=12% Similarity=0.042 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHcC---------CCC-CCCcEEEEEecCCC---CcCCHHHHhccccEEEeCCCCC
Q 006411 519 RRLKTQFLIEMEG---------FDS-GSEQILLVGATNRP---QELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 519 ~rilneLL~eLDG---------l~~-~~~~VlVIaATNrP---d~LDpALlRRFDr~I~IplPd~ 570 (646)
..++..|+.-|+. ... ...+.+||++-|-. ..|.++++-||+-+|.++.|+.
T Consensus 107 ~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~v~v~~~~~ 171 (584)
T PRK13406 107 PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADRLAFHLDLDGLAL 171 (584)
T ss_pred HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhheEEEEEcCCCCh
Confidence 3577788887763 111 12356777763321 3499999999999999998864
|
|
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=80.05 E-value=6.9 Score=41.11 Aligned_cols=70 Identities=21% Similarity=0.195 Sum_probs=42.9
Q ss_pred CCCCcccccccC---hHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhcCCeeeeehh
Q 006411 404 RDPHVRWDDIAG---LEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCRQPAVIFVDE 480 (646)
Q Consensus 404 ~~p~VsfdDIgG---le~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~aPsIIFIDE 480 (646)
...+.+|++..- ...++..+++++.. |........|++|||||+.+.......+...+....-.++|++-
T Consensus 78 ~~~~~tFdnf~~~~~~~~a~~~a~~y~~~-------~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~ 150 (268)
T PRK08116 78 KFRNSTFENFLFDKGSEKAYKIARKYVKK-------FEEMKKENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNF 150 (268)
T ss_pred HHHhcchhcccCChHHHHHHHHHHHHHHH-------HHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 445677876642 22234444444432 11122234689999999777777888888877665666777754
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 646 | ||||
| 3d8b_A | 357 | Crystal Structure Of Human Fidgetin-Like Protein 1 | 4e-74 | ||
| 3vfd_A | 389 | Human Spastin Aaa Domain Length = 389 | 2e-55 | ||
| 3b9p_A | 297 | Spastin Length = 297 | 7e-48 | ||
| 2qp9_X | 355 | Crystal Structure Of S.Cerevisiae Vps4 Length = 355 | 3e-37 | ||
| 3eih_A | 340 | Crystal Structure Of S.Cerevisiae Vps4 In The Prese | 8e-37 | ||
| 3eie_A | 322 | Crystal Structure Of S.Cerevisiae Vps4 In The So4-B | 2e-36 | ||
| 2rko_A | 331 | Crystal Structure Of The Vps4p-Dimer Length = 331 | 4e-36 | ||
| 2zam_A | 444 | Crystal Structure Of Mouse Skd1VPS4B APO-Form Lengt | 7e-35 | ||
| 1xwi_A | 322 | Crystal Structure Of Vps4b Length = 322 | 4e-34 | ||
| 3h4m_A | 285 | Aaa Atpase Domain Of The Proteasome- Activating Nuc | 1e-18 | ||
| 2x8a_A | 274 | Human Nuclear Valosin Containing Protein Like (Nvl) | 2e-18 | ||
| 1r7r_A | 816 | The Crystal Structure Of Murine P97VCP AT 3.6A Leng | 2e-16 | ||
| 4b4t_M | 434 | Near-Atomic Resolution Structural Model Of The Yeas | 2e-16 | ||
| 3cf1_A | 806 | Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX Len | 3e-16 | ||
| 3cf0_A | 301 | Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH | 4e-16 | ||
| 4b4t_K | 428 | Near-Atomic Resolution Structural Model Of The Yeas | 3e-15 | ||
| 4b4t_L | 437 | Near-Atomic Resolution Structural Model Of The Yeas | 1e-14 | ||
| 3hu3_A | 489 | Structure Of P97 N-D1 R155h Mutant In Complex With | 1e-13 | ||
| 3hu2_A | 489 | Structure Of P97 N-D1 R86a Mutant In Complex With A | 2e-13 | ||
| 3hu1_A | 489 | Structure Of P97 N-D1 R95g Mutant In Complex With A | 2e-13 | ||
| 1e32_A | 458 | Structure Of The N-Terminal Domain And The D1 Aaa D | 2e-13 | ||
| 3kds_E | 465 | Apo-ftsh Crystal Structure Length = 465 | 3e-13 | ||
| 2ce7_A | 476 | Edta Treated Length = 476 | 3e-13 | ||
| 4b4t_J | 405 | Near-Atomic Resolution Structural Model Of The Yeas | 3e-13 | ||
| 4b4t_H | 467 | Near-Atomic Resolution Structural Model Of The Yeas | 2e-12 | ||
| 1lv7_A | 257 | Crystal Structure Of The Aaa Domain Of Ftsh Length | 3e-12 | ||
| 2r62_A | 268 | Crystal Structure Of Helicobacter Pylori Atp Depend | 3e-12 | ||
| 4b4t_I | 437 | Near-Atomic Resolution Structural Model Of The Yeas | 1e-10 | ||
| 2qz4_A | 262 | Human Paraplegin, Aaa Domain In Complex With Adp Le | 4e-09 | ||
| 1iy2_A | 278 | Crystal Structure Of The Ftsh Atpase Domain From Th | 1e-06 | ||
| 2dhr_A | 499 | Whole Cytosolic Region Of Atp-Dependent Metalloprot | 2e-06 | ||
| 1ixz_A | 254 | Crystal Structure Of The Ftsh Atpase Domain From Th | 2e-06 | ||
| 4eiw_A | 508 | Whole Cytosolic Region Of Atp-Dependent Metalloprot | 2e-06 |
| >pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In Complex With Adp Length = 357 | Back alignment and structure |
|
| >pdb|3VFD|A Chain A, Human Spastin Aaa Domain Length = 389 | Back alignment and structure |
|
| >pdb|3B9P|A Chain A, Spastin Length = 297 | Back alignment and structure |
|
| >pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4 Length = 355 | Back alignment and structure |
|
| >pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of Atpgammas Length = 340 | Back alignment and structure |
|
| >pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound State Length = 322 | Back alignment and structure |
|
| >pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer Length = 331 | Back alignment and structure |
|
| >pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form Length = 444 | Back alignment and structure |
|
| >pdb|1XWI|A Chain A, Crystal Structure Of Vps4b Length = 322 | Back alignment and structure |
|
| >pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating Nucleotidase Length = 285 | Back alignment and structure |
|
| >pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C- Terminal Aaa-Atpase Domain Length = 274 | Back alignment and structure |
|
| >pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A Length = 816 | Back alignment and structure |
|
| >pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 434 | Back alignment and structure |
|
| >pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX Length = 806 | Back alignment and structure |
|
| >pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP Length = 301 | Back alignment and structure |
|
| >pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 428 | Back alignment and structure |
|
| >pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 437 | Back alignment and structure |
|
| >pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs Length = 489 | Back alignment and structure |
|
| >pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs Length = 489 | Back alignment and structure |
|
| >pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs Length = 489 | Back alignment and structure |
|
| >pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain Of Membrane Fusion Atpase P97 Length = 458 | Back alignment and structure |
|
| >pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure Length = 465 | Back alignment and structure |
|
| >pdb|2CE7|A Chain A, Edta Treated Length = 476 | Back alignment and structure |
|
| >pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 405 | Back alignment and structure |
|
| >pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 467 | Back alignment and structure |
|
| >pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh Length = 257 | Back alignment and structure |
|
| >pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent Protease, Ftsh Length = 268 | Back alignment and structure |
|
| >pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 437 | Back alignment and structure |
|
| >pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp Length = 262 | Back alignment and structure |
|
| >pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus Thermophilus Length = 278 | Back alignment and structure |
|
| >pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh (G399l) Length = 499 | Back alignment and structure |
|
| >pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus Thermophilus Length = 254 | Back alignment and structure |
|
| >pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh (G399l) Length = 508 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} Length = 357 | Back alignment and structure |
|---|
Score = 347 bits (892), Expect = e-115
Identities = 152/397 (38%), Positives = 197/397 (49%), Gaps = 119/397 (29%)
Query: 310 SRRGVRGSFVPPIRNNGSNVGNMTSRISVYVLTIMFMSISHTHAHNYEHVQVLIPFSSFN 369
+ S VPPI N +
Sbjct: 15 TENLYFQSMVPPIPKQDGGEQNGGMQCKP------------------------------- 43
Query: 370 YSLEMLCGPDGELPEKLRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIW 429
P + E+L+NLEP++IE + NEIMD P V W+DIAG+E AK + E+V+W
Sbjct: 44 -YGAGPTEPAHPVDERLKNLEPKMIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVW 102
Query: 430 PLLRPDIFKGCRSPGKGLLLFGPP-------------------------------IGEGE 458
P+LRPDIF G R P KG+LLFGPP +GEGE
Sbjct: 103 PMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGE 162
Query: 459 KLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESS 518
K+VRALF VA C+QPAVIF+DEIDSLLSQ + DGEHESS
Sbjct: 163 KMVRALFAVARCQQPAVIFIDEIDSLLSQ----------------------RGDGEHESS 200
Query: 519 RRLKTQFLIEMEGFDSGS-EQILLVGATNRPQELDEAARRRLTKRLYIPLPSS------- 570
RR+KT+FL++++G + S ++IL+VGATNRPQE+DEAARRRL KRLYIPLP +
Sbjct: 201 RRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIV 260
Query: 571 ------------------------GYSGSDMKNLVKEASMGPLREALRQGIEITRLQKED 606
+SG+DM L +EAS+GP+R +I + +
Sbjct: 261 INLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTA--DIATITPDQ 318
Query: 607 MQPVTLQDFENALPQVRASVSLNELGIYEEWNKQFGS 643
++P+ DFENA VR SVS +L +YE WNK FG
Sbjct: 319 VRPIAYIDFENAFRTVRPSVSPKDLELYENWNKTFGC 355
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} Length = 297 | Back alignment and structure |
|---|
Score = 337 bits (867), Expect = e-112
Identities = 116/319 (36%), Positives = 172/319 (53%), Gaps = 88/319 (27%)
Query: 392 RLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFG 451
+L++ + +EI++ V W DIAG + AK+ + EMVI P +RP++F G R+P KGLLLFG
Sbjct: 2 KLVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFG 61
Query: 452 PP-------------------------------IGEGEKLVRALFGVASCRQPAVIFVDE 480
PP +G+GEKLVRALF VA QP++IF+DE
Sbjct: 62 PPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDE 121
Query: 481 IDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGF--DSGSEQ 538
+DSLLS+ +S EHE+SRRLKT+FL+E +G + ++
Sbjct: 122 VDSLLSE----------------------RSSSEHEASRRLKTEFLVEFDGLPGNPDGDR 159
Query: 539 ILLVGATNRPQELDEAARRRLTKRLYIPLPSS---------------------------- 570
I+++ ATNRPQELDEAA RR TKR+Y+ LP
Sbjct: 160 IVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAK 219
Query: 571 ---GYSGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRASVS 627
GYSGSD+ L K+A++ P+RE + ++ L M+ +T QDF ++L ++R SV+
Sbjct: 220 ITDGYSGSDLTALAKDAALEPIRELNVE--QVKCLDISAMRAITEQDFHSSLKRIRRSVA 277
Query: 628 LNELGIYEEWNKQFGSLSL 646
L YE+W++ +G +++
Sbjct: 278 PQSLNSYEKWSQDYGDITI 296
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Length = 389 | Back alignment and structure |
|---|
Score = 339 bits (872), Expect = e-111
Identities = 120/333 (36%), Positives = 175/333 (52%), Gaps = 87/333 (26%)
Query: 377 GPDGELPEKLRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDI 436
+ + RN++ L + NEI+D V++DDIAG + AK+ + E+VI P LRP++
Sbjct: 81 TRKKKDLKNFRNVDSNLANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPEL 140
Query: 437 FKGCRSPGKGLLLFGPP-------------------------------IGEGEKLVRALF 465
F G R+P +GLLLFGPP +GEGEKLVRALF
Sbjct: 141 FTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALF 200
Query: 466 GVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQF 525
VA QP++IF+D++DSLL + + +GEH++SRRLKT+F
Sbjct: 201 AVARELQPSIIFIDQVDSLLCE----------------------RREGEHDASRRLKTEF 238
Query: 526 LIEMEGFDS-GSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS-------------- 570
LIE +G S G +++L++GATNRPQELDEA RR KR+Y+ LP+
Sbjct: 239 LIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQ 298
Query: 571 -----------------GYSGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQ 613
GYSGSD+ L K+A++GP+RE + ++ + +M+ + L
Sbjct: 299 GSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPE--QVKNMSASEMRNIRLS 356
Query: 614 DFENALPQVRASVSLNELGIYEEWNKQFGSLSL 646
DF +L +++ SVS L Y WNK FG ++
Sbjct: 357 DFTESLKKIKRSVSPQTLEAYIRWNKDFGDTTV 389
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Length = 322 | Back alignment and structure |
|---|
Score = 303 bits (777), Expect = 2e-98
Identities = 95/336 (28%), Positives = 149/336 (44%), Gaps = 113/336 (33%)
Query: 399 NEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP----- 453
I+ P+V+W+D+AGLE AK+ + E VI P+ P +FKG R P G+LL+GPP
Sbjct: 6 TAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKS 65
Query: 454 --------------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQ 487
+GE EKLV+ LF +A +P++IF+D++D+L
Sbjct: 66 YLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGT 125
Query: 488 MLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNR 547
+ +GE E+SRR+KT+ L++M G + S+ +L++GATN
Sbjct: 126 ----------------------RGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNI 163
Query: 548 PQELDEAARRRLTKRLYIPLPSS-------------------------------GYSGSD 576
P +LD A RRR +R+YIPLP GYSGSD
Sbjct: 164 PWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSD 223
Query: 577 MKNLVKEASMGPLRE-----------------------------ALRQGIEITRLQKEDM 607
+ +VK+A M P+R+ A+ +
Sbjct: 224 IAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKE 283
Query: 608 QPVTLQDFENALPQVRASVSLNELGIYEEWNKQFGS 643
+T++DF A+ R +V+ ++L E++ + FG
Sbjct: 284 PDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQ 319
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* Length = 355 | Back alignment and structure |
|---|
Score = 303 bits (777), Expect = 8e-98
Identities = 98/357 (27%), Positives = 156/357 (43%), Gaps = 113/357 (31%)
Query: 378 PDGELPEKLRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIF 437
E + +L +S+ I+ P+V+W+D+AGLE AK+ + E VI P+ P +F
Sbjct: 18 SQEEGEDNGGEDNKKLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLF 77
Query: 438 KGCRSPGKGLLLFGPP-------------------------------IGEGEKLVRALFG 466
KG R P G+LL+GPP +GE EKLV+ LF
Sbjct: 78 KGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFA 137
Query: 467 VASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFL 526
+A +P++IF+D++D+L + +GE E+SRR+KT+ L
Sbjct: 138 MARENKPSIIFIDQVDALTGT----------------------RGEGESEASRRIKTELL 175
Query: 527 IEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS---------------- 570
++M G + S+ +L++GATN P +LD A RRR +R+YIPLP
Sbjct: 176 VQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPS 235
Query: 571 ---------------GYSGSDMKNLVKEASMGPLRE------------------------ 591
GYSGSD+ +VK+A M P+R+
Sbjct: 236 VLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPSS 295
Query: 592 -----ALRQGIEITRLQKEDMQPVTLQDFENALPQVRASVSLNELGIYEEWNKQFGS 643
A+ + +T++DF A+ R +V+ ++L E++ + FG
Sbjct: 296 PGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQ 352
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Length = 322 | Back alignment and structure |
|---|
Score = 301 bits (772), Expect = 1e-97
Identities = 95/341 (27%), Positives = 147/341 (43%), Gaps = 120/341 (35%)
Query: 401 IMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP------- 453
I+ P+V+W D+AGLE AK+ + E VI P+ P +F G R+P +G+LLFGPP
Sbjct: 2 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYL 61
Query: 454 -------------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQM 488
+GE EKLV+ LF +A +P++IF+DEIDSL
Sbjct: 62 AKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGS- 120
Query: 489 LPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRP 548
+S+ E E++RR+KT+FL++M+G ++ IL++GATN P
Sbjct: 121 ---------------------RSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIP 159
Query: 549 QELDEAARRRLTKRLYIPLPSS-------------------------------GYSGSDM 577
LD A RRR KR+YIPLP GYSG+D+
Sbjct: 160 WVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADI 219
Query: 578 KNLVKEASMGPLRE-----------------------------------ALRQGIEITRL 602
+V++A M P+R+ A+
Sbjct: 220 SIIVRDALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPG 279
Query: 603 QKEDMQPVTLQDFENALPQVRASVSLNELGIYEEWNKQFGS 643
K V++ D +L + +V+ ++L +++ + FG
Sbjct: 280 DKLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTEDFGQ 320
|
| >2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A Length = 444 | Back alignment and structure |
|---|
Score = 289 bits (740), Expect = 2e-91
Identities = 97/365 (26%), Positives = 152/365 (41%), Gaps = 120/365 (32%)
Query: 377 GPDGELPEKLRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDI 436
E + +L + I+ P+V+W D+AGLE AK+ + E VI P+ P +
Sbjct: 100 NDSDGEAESDDPEKKKLQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHL 159
Query: 437 FKGCRSPGKGLLLFGPP--------------------------------IGEGEKLVRAL 464
F G R+P +G+LLFGPP +GE EKLV+ L
Sbjct: 160 FTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNL 219
Query: 465 FGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQ 524
F +A +P++IF+DEIDSL +S+ E E++RR+KT+
Sbjct: 220 FQLARENKPSIIFIDEIDSLCGS----------------------RSENESEAARRIKTE 257
Query: 525 FLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS-------------- 570
FL++M+G ++ IL++GATN P LD A RRR KR+YIPLP +
Sbjct: 258 FLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGST 317
Query: 571 -----------------GYSGSDMKNLVKEASMGPLRE---------------------- 591
GYSG+D+ +V++A M P+R+
Sbjct: 318 QNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNCIV 377
Query: 592 -------------ALRQGIEITRLQKEDMQPVTLQDFENALPQVRASVSLNELGIYEEWN 638
A+ K V++ D +L + +V+ +L +++
Sbjct: 378 NDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMWDMLRSLSSTKPTVNEQDLLKLKKFT 437
Query: 639 KQFGS 643
+ FG
Sbjct: 438 EDFGQ 442
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} Length = 301 | Back alignment and structure |
|---|
Score = 175 bits (445), Expect = 5e-50
Identities = 79/318 (24%), Positives = 121/318 (38%), Gaps = 97/318 (30%)
Query: 400 EIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFK--GCRSPGKGLLLFGPP---- 453
E + P V W+DI GLE K+ + E+V +P+ PD F G KG+L +GPP
Sbjct: 4 ETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPS-KGVLFYGPPGCGK 62
Query: 454 ---------------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLS 486
GE E VR +F A P V+F DE+DS+
Sbjct: 63 TLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSI-- 120
Query: 487 QMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATN 546
R ++ R+ Q L EM+G + + + ++GATN
Sbjct: 121 --------------AKAR---GGNIGDGGGAADRVINQILTEMDGMSTK-KNVFIIGATN 162
Query: 547 RPQELDEAARR--RLTKRLYIPLPSS------------------------------GYSG 574
RP +D A R RL + +YIPLP G+SG
Sbjct: 163 RPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSG 222
Query: 575 SDMKNLVKEASMGPLREALRQGIEITRLQKEDMQP-----------VTLQDFENALPQVR 623
+D+ + + A +RE++ I R ++ + + FE A+ R
Sbjct: 223 ADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFAR 282
Query: 624 ASVSLNELGIYEEWNKQF 641
SVS N++ YE + +
Sbjct: 283 RSVSDNDIRKYEMFAQTL 300
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} Length = 274 | Back alignment and structure |
|---|
Score = 164 bits (417), Expect = 2e-46
Identities = 81/292 (27%), Positives = 120/292 (41%), Gaps = 97/292 (33%)
Query: 406 PHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGC-RSPGKGLLLFGPP----------- 453
P+V W DI LE ++ + ++ P+ PD FK G+LL GPP
Sbjct: 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAV 64
Query: 454 --------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMH 493
+GE E+ VR +F A P VIF DE+D+L
Sbjct: 65 ANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDAL--------- 115
Query: 494 VHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDE 553
C +R SD E +S R+ Q L EM+G ++ +Q+ ++ ATNRP +D
Sbjct: 116 -------CPRR------SDRETGASVRVVNQLLTEMDGLEA-RQQVFIMAATNRPDIIDP 161
Query: 554 AARR--RLTKRLYIPLPSS-----------------------------------GYSGSD 576
A R RL K L++ LP Y+G+D
Sbjct: 162 AILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGAD 221
Query: 577 MKNLVKEASMGPLREALRQGIEITRLQKEDMQP-VTLQDFENALPQVRASVS 627
+ LV+EAS+ ALRQ + + E + V+ + FE A +VR+S+S
Sbjct: 222 LSALVREASI----CALRQEMARQKSGNEKGELKVSHKHFEEAFKKVRSSIS 269
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* 2pjh_B Length = 489 | Back alignment and structure |
|---|
Score = 157 bits (399), Expect = 6e-42
Identities = 76/294 (25%), Positives = 116/294 (39%), Gaps = 92/294 (31%)
Query: 400 EIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFK--GCRSPGKGLLLFGPP---- 453
+ + V +DDI G + EMV PL P +FK G + P +G+LL+GPP
Sbjct: 193 DEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPP-RGILLYGPPGTGK 251
Query: 454 ---------------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLS 486
GE E +R F A PA+IF+DE+D++
Sbjct: 252 TLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAI-- 309
Query: 487 QMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATN 546
KR K+ GE E RR+ +Q L M+G + ++++ ATN
Sbjct: 310 --------------APKR----EKTHGEVE--RRIVSQLLTLMDGLKQRA-HVIVMAATN 348
Query: 547 RPQELDEAARR--RLTKRLYIPLPSS------------------------------GYSG 574
RP +D A RR R + + I +P + G+ G
Sbjct: 349 RPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVG 408
Query: 575 SDMKNLVKEASMGPLREALRQG-IEITRLQKEDMQP--VTLQDFENALPQVRAS 625
+D+ L EA++ +R+ + +E + E M VT+ DF AL Q S
Sbjct: 409 ADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPS 462
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Length = 285 | Back alignment and structure |
|---|
Score = 142 bits (361), Expect = 2e-38
Identities = 78/298 (26%), Positives = 121/298 (40%), Gaps = 100/298 (33%)
Query: 397 VSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFK--GCRSPGKGLLLFGPP- 453
+D P+VR++DI GLE + + E+V PL P++F+ G P KG+LL+GPP
Sbjct: 3 AKAMEVDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPP-KGILLYGPPG 61
Query: 454 ------------------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDS 483
IGEG LV+ +F +A + P++IF+DEID+
Sbjct: 62 TGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDA 121
Query: 484 LLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVG 543
+ + KR + G+ E R L Q L EM+GFD+ + ++G
Sbjct: 122 IAA----------------KRT--DALTGGDREVQRTL-MQLLAEMDGFDA-RGDVKIIG 161
Query: 544 ATNRPQELDEAARR--RLTKRLYIPLP------------------------------SSG 571
ATNRP LD A R R + + +P P + G
Sbjct: 162 ATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEG 221
Query: 572 YSGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRASVSLN 629
G+++K + EA M +R E VT+ DF A+ ++ +
Sbjct: 222 CVGAELKAICTEAGMNAIR--------------ELRDYVTMDDFRKAVEKIMEKKKVK 265
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* Length = 268 | Back alignment and structure |
|---|
Score = 90.8 bits (226), Expect = 2e-20
Identities = 68/292 (23%), Positives = 116/292 (39%), Gaps = 105/292 (35%)
Query: 401 IMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFK--GCRSPGKGLLLFGPP----- 453
I P+VR+ D+AG E AK+ V+E+V + L P+ + G + P KG+LL GPP
Sbjct: 1 INAEKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIP-KGVLLVGPPGTGKT 58
Query: 454 --------------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQ 487
+G G VR LF A + P++IF+DEID++
Sbjct: 59 LLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAI--- 115
Query: 488 MLPYMHVHHIKLFCLKRFYFQRKSD---GEHESSRRLKTQFLIEMEGFDSGSEQILLVGA 544
+ R + ++ + Q L EM+GF S + ++++ A
Sbjct: 116 ---------------GK---SRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAA 157
Query: 545 TNRPQELDEAARR--RLTKRLYIPLP------------------------------SSGY 572
TNRP+ LD A R R +++ + P ++G
Sbjct: 158 TNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGL 217
Query: 573 SGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRA 624
+G+D+ N++ EA++ R ++ V Q + A+ + A
Sbjct: 218 AGADLANIINEAALLAGRNNQKE--------------VRQQHLKEAVERGIA 255
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 Length = 278 | Back alignment and structure |
|---|
Score = 87.8 bits (218), Expect = 2e-19
Identities = 73/286 (25%), Positives = 113/286 (39%), Gaps = 105/286 (36%)
Query: 401 IMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFK--GCRSPGKGLLLFGPP----- 453
++ P V + D+AG E AK+ + E+V + L P F G R P KG+LL GPP
Sbjct: 30 VLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIP-KGVLLVGPPGVGKT 87
Query: 454 --------------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQ 487
+G G VR LF A P ++F+DEID++
Sbjct: 88 HLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAV--- 144
Query: 488 MLPYMHVHHIKLFCLKRFYFQRKSD--GEHESSRRLKTQFLIEMEGFDSGSEQILLVGAT 545
R +R S G ++ + Q L+EM+GF+ I+++ AT
Sbjct: 145 ---------------GR---KRGSGVGGGNDEREQTLNQLLVEMDGFE-KDTAIVVMAAT 185
Query: 546 NRPQELDEAARR--RLTKRLYIPLP------------------------------SSGYS 573
NRP LD A R R +++ I P + G+
Sbjct: 186 NRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFV 245
Query: 574 GSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENAL 619
G+D++NL+ EA++ RE R+ +T++D E A
Sbjct: 246 GADLENLLNEAALLAAREGRRK--------------ITMKDLEEAA 277
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 Length = 257 | Back alignment and structure |
|---|
Score = 87.0 bits (216), Expect = 3e-19
Identities = 73/291 (25%), Positives = 116/291 (39%), Gaps = 105/291 (36%)
Query: 401 IMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFK--GCRSPGKGLLLFGPP----- 453
+ + + D+AG + AK+ V E+V + L P F+ G + P KG+L+ GPP
Sbjct: 2 LTEDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIP-KGVLMVGPPGTGKT 59
Query: 454 --------------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQ 487
+G G VR +F A P +IF+DEID++
Sbjct: 60 LLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAV--- 116
Query: 488 MLPYMHVHHIKLFCLKRFYFQRKS--DGEHESSRRLKTQFLIEMEGFDSGSEQILLVGAT 545
R QR + G H+ + Q L+EM+GF+ G+E I+++ AT
Sbjct: 117 ---------------GR---QRGAGLGGGHDEREQTLNQMLVEMDGFE-GNEGIIVIAAT 157
Query: 546 NRPQELDEAARR--RLTKRLYIPLP------------------------------SSGYS 573
NRP LD A R R +++ + LP + G+S
Sbjct: 158 NRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFS 217
Query: 574 GSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRA 624
G+D+ NLV EA++ R R V++ +FE A ++
Sbjct: 218 GADLANLVNEAALFAARGNKRV--------------VSMVEFEKAKDKIMM 254
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* Length = 254 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 4e-19
Identities = 73/286 (25%), Positives = 113/286 (39%), Gaps = 105/286 (36%)
Query: 401 IMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFK--GCRSPGKGLLLFGPP----- 453
++ P V + D+AG E AK+ + E+V + L P F G R P KG+LL GPP
Sbjct: 6 VLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIP-KGVLLVGPPGVGKT 63
Query: 454 --------------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQ 487
+G G VR LF A P ++F+DEID++
Sbjct: 64 HLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAV--- 120
Query: 488 MLPYMHVHHIKLFCLKRFYFQRKSD--GEHESSRRLKTQFLIEMEGFDSGSEQILLVGAT 545
R +R S G ++ + Q L+EM+GF+ I+++ AT
Sbjct: 121 ---------------GR---KRGSGVGGGNDEREQTLNQLLVEMDGFE-KDTAIVVMAAT 161
Query: 546 NRPQELDEAARR--RLTKRLYIPLP------------------------------SSGYS 573
NRP LD A R R +++ I P + G+
Sbjct: 162 NRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFV 221
Query: 574 GSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENAL 619
G+D++NL+ EA++ RE R+ +T++D E A
Sbjct: 222 GADLENLLNEAALLAAREGRRK--------------ITMKDLEEAA 253
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 85.8 bits (213), Expect = 9e-19
Identities = 66/284 (23%), Positives = 108/284 (38%), Gaps = 106/284 (37%)
Query: 408 VRWDDIAGLEHAKKCVMEMVIWPLLRPDIFK--GCRSPGKGLLLFGPP------------ 453
V + D+AG+ AK V E V + L P+ F G + P KG LL GPP
Sbjct: 3 VSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVP-KGALLLGPPGCGKTLLAKAVA 60
Query: 454 -------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHV 494
G G VR+LF A R P ++++DEID++ +
Sbjct: 61 TEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKK------- 113
Query: 495 HHIKLFCLKRFYFQRKSDGEHESSRRLKT--QFLIEMEGFDSGSEQILLVGATNRPQELD 552
+ + ++ +T Q L+EM+G + ++ ++++ +TNR LD
Sbjct: 114 -------------RSTTMSGFSNTEEEQTLNQLLVEMDGMGT-TDHVIVLASTNRADILD 159
Query: 553 EAARR--RLTKRLYIPLP--------------------------------SSGYSGSDMK 578
A R RL + ++I LP + G+SG+D+
Sbjct: 160 GALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIA 219
Query: 579 NLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQV 622
N+ EA++ R E V +FE A+ +V
Sbjct: 220 NICNEAALHAAR--------------EGHTSVHTLNFEYAVERV 249
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A Length = 293 | Back alignment and structure |
|---|
Score = 85.2 bits (211), Expect = 2e-18
Identities = 31/298 (10%), Positives = 81/298 (27%), Gaps = 97/298 (32%)
Query: 411 DDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP----------------- 453
+ + G A + ++V+ + P L ++G
Sbjct: 4 NKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVP-LILGIWGGKGQGKSFQCELVFRKMGI 62
Query: 454 --------------IGEGEKLVRALFGVASCR----QPAVIFVDEIDSLLSQMLPYMHVH 495
GE KL+R + A+ +F++++D+
Sbjct: 63 NPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAG--------- 113
Query: 496 HIKLFCLKRFYFQRKSDGEHESSRRLKTQFL---------IEMEGFDSGSE--QILLVGA 544
+ ++ + ++ L +++ G + E ++ ++
Sbjct: 114 ------------RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVT 161
Query: 545 TNRPQELDEAARR--RLTKRLYIPLPSS------------------------GYSGSDMK 578
N L R R+ K + P + G +
Sbjct: 162 GNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSID 221
Query: 579 NLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRASVSLNELGIYEE 636
+ + +R+ + T ++K + L F+ + +++ +L Y
Sbjct: 222 FFGALRARV-YDDEVRKWVSGTGIEK--IGDKLLNSFDGPPTFEQPKMTIEKLLEYGN 276
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* Length = 272 | Back alignment and structure |
|---|
Score = 76.3 bits (188), Expect = 1e-15
Identities = 26/194 (13%), Positives = 55/194 (28%), Gaps = 58/194 (29%)
Query: 406 PHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP------------ 453
+ I V++ + + R+P +LL GPP
Sbjct: 28 ASYIMNGIIKWGDPVTRVLDDGELLVQQTKNSD--RTPLVSVLLEGPPHSGKTALAAKIA 85
Query: 454 -------------------IGEGE-KLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMH 493
+ + ++ +F A Q + + VD+I+ LL
Sbjct: 86 EESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLL-------- 137
Query: 494 VHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDE 553
S + L+ ++ ++L++G T+R L E
Sbjct: 138 ---------------DYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQE 182
Query: 554 AAR-RRLTKRLYIP 566
+ +++P
Sbjct: 183 MEMLNAFSTTIHVP 196
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} Length = 499 | Back alignment and structure |
|---|
Score = 77.6 bits (192), Expect = 3e-15
Identities = 76/294 (25%), Positives = 117/294 (39%), Gaps = 111/294 (37%)
Query: 401 IMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFK--GCRSPGKGLLLFGPPIGEGE 458
++ P V + D+AG E AK+ + E+V + L P F G R P KG+LL GPP G G+
Sbjct: 21 VLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIP-KGVLLVGPP-GVGK 77
Query: 459 KL--------------------------------VRALFGVASCRQPAVIFVDEIDSLLS 486
VR LF A P ++F+DEID++
Sbjct: 78 THLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAV-- 135
Query: 487 QMLPYMHVHHIKLFCLKRFYFQRKS--DGEHESSRRLKT--QFLIEMEGFDSGSEQILLV 542
R +R S G ++ R +T Q L+EM+GF+ I+++
Sbjct: 136 ----------------GR---KRGSGVGGGND--EREQTLNQLLVEMDGFE-KDTAIVVM 173
Query: 543 GATNRPQELDEAARR--RLTKRLYIPLP------------------------------SS 570
ATNRP LD A R R +++ I P +
Sbjct: 174 AATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTP 233
Query: 571 GYSGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRA 624
G+ G+D++NL+ EA++ RE R+ +T++D E A +V
Sbjct: 234 GFVGADLENLLNEAALLAAREGRRK--------------ITMKDLEEAADRVMM 273
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* Length = 476 | Back alignment and structure |
|---|
Score = 76.5 bits (189), Expect = 8e-15
Identities = 78/292 (26%), Positives = 116/292 (39%), Gaps = 111/292 (38%)
Query: 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFK--GCRSPGKGLLLFGPPIGEGEKL 460
+ V + D+ G E A + + E+V + L P F G R P KG+LL GPP G G+ L
Sbjct: 8 SGNKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMP-KGILLVGPP-GTGKTL 64
Query: 461 --------------------------------VRALFGVASCRQPAVIFVDEIDSLLSQM 488
VR LF A P ++F+DEID++
Sbjct: 65 LARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAV---- 120
Query: 489 LPYMHVHHIKLFCLKRFYFQRKSD--GEHESSRRLKT--QFLIEMEGFDSGSEQILLVGA 544
R R + G H+ R +T Q L+EM+GFD E I+++ A
Sbjct: 121 --------------GR---HRGAGLGGGHD--EREQTLNQLLVEMDGFD-SKEGIIVMAA 160
Query: 545 TNRPQELDEAARR--RLTKRLYIPLP------------------------------SSGY 572
TNRP LD A R R K++ + P + G+
Sbjct: 161 TNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGF 220
Query: 573 SGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRA 624
G+D++NLV EA++ RE + +T++DFE A+ +V A
Sbjct: 221 VGADLENLVNEAALLAAREGRDK--------------ITMKDFEEAIDRVIA 258
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.0 bits (147), Expect = 9e-10
Identities = 97/662 (14%), Positives = 183/662 (27%), Gaps = 196/662 (29%)
Query: 61 HTQSETDE-------ILTRPIRREAVAK-LDEARRALVPDSDRRAFEQAGRAPGCAFSLK 112
H ET E IL + +A D V D + +
Sbjct: 6 HMDFETGEHQYQYKDIL--SVFEDAFVDNFDCKD---VQDMPKSILSKE----------- 49
Query: 113 GGIDVEKIKQSKYFRANLQQYNEQATSELGGRLDRQGKLFSNQSKVMTQEKLASLYGNNI 172
+++ I SK T L L + + + +E L Y +
Sbjct: 50 ---EIDHIIMSKD--------AVSGTLRLFWTLLSKQE---EMVQKFVEEVLRINYKF-L 94
Query: 173 MKTNTGSFRSMLNSKSNGSEDCVIVEKSSLFSN---LPKGHNVSKFVKVEEEERGYTNSS 229
M ++ S I ++ L+++ K +NVS+ + +
Sbjct: 95 MS----PIKTEQRQPS-MMTRMYIEQRDRLYNDNQVFAK-YNVSRLQPYLKLRQALLELR 148
Query: 230 --------GMK------------RAH-VEISSPTN--WISKSPSATENVNNDVSANGFVT 266
G+ ++ V+ W+ N+ N S +
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL--------NLKNCNSPETVLE 200
Query: 267 AKAKLERDVRQRRGLMGSSGASVSPQSDNNPNIRGYGAKSYGISRRGVRGSFVPPIRNNG 326
KL + + + +SD++ NI+ + +R N
Sbjct: 201 MLQKLLYQIDP----------NWTSRSDHSSNIK----LRIHSIQAELRRLLKSKPYENC 246
Query: 327 ----SNVGN--------------MTSR-ISVYVLTIMFMSISHTHAHNYEHVQVLIPFSS 367
NV N +T+R V +S + + +
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQV------TDFLSAATTTHISLDHHSMTLTP 300
Query: 368 FNYSLEML-----CGPDGELPEKLRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAK-K 421
+ +L C P +LP ++ PR + ++ I RD WD+ + K
Sbjct: 301 -DEVKSLLLKYLDCRPQ-DLPREVLTTNPRRLSIIAESI--RDGLATWDNWKHVNCDKLT 356
Query: 422 CVMEMVIWPLLRPD----------IF-KGCRSPGKGL-LLFGPPIGEGEKLVRALFGVAS 469
++E + +L P +F P L L++ I +V S
Sbjct: 357 TIIESSL-NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415
Query: 470 C--RQPA--VIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKT-- 523
+QP I + I L L + H + + + + D + L
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYALHRSI--VDHYNIPKTFDSDDLIPPYLDQYF 473
Query: 524 -QFL------IEMEGFDSGSEQILL-------------------VGATNRPQEL------ 551
+ IE + + L N Q+L
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY 533
Query: 552 ---DEAARRRLTKRL--YIPLPSSGYSGSDMKNLVKEASMGP----LREALRQGIEITRL 602
++ RL + ++P S +L++ A M EA +Q +
Sbjct: 534 ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQ------V 587
Query: 603 QK 604
Q+
Sbjct: 588 QR 589
|
| >3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens} Length = 78 | Back alignment and structure |
|---|
Score = 38.2 bits (90), Expect = 5e-04
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 14/57 (24%)
Query: 571 GYSGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRASVS 627
G SG+++K + EA M ALR E VT +DFE A+ +V S
Sbjct: 36 GASGAEVKGVCTEAGM----YALR----------ERRVHVTQEDFEMAVAKVMQKDS 78
|
| >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 | Back alignment and structure |
|---|
Score = 39.5 bits (91), Expect = 7e-04
Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 12/41 (29%)
Query: 76 REAVAKLDEARRALVPDSDRRAFEQAGRAPGCAFSLKGGID 116
++A+ KL + + DS AP A ++K ++
Sbjct: 19 KQALKKLQASLKLYADDS----------AP--ALAIKATME 47
|
| >2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens} Length = 86 | Back alignment and structure |
|---|
Score = 37.9 bits (89), Expect = 7e-04
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 14/57 (24%)
Query: 571 GYSGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRASVS 627
G SG+++K + EA M ALR E VT +DFE A+ +V S
Sbjct: 44 GASGAEVKGVCTEAGM----YALR----------ERRVHVTQEDFEMAVAKVMQKDS 86
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 646 | |||
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 100.0 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 100.0 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 100.0 | |
| 4b4t_H | 467 | 26S protease regulatory subunit 7 homolog; hydrola | 100.0 | |
| 3cf2_A | 806 | TER ATPase, transitional endoplasmic reticulum ATP | 100.0 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 100.0 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 100.0 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 100.0 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 100.0 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 100.0 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 100.0 | |
| 2zan_A | 444 | Vacuolar protein sorting-associating protein 4B; S | 100.0 | |
| 3cf2_A | 806 | TER ATPase, transitional endoplasmic reticulum ATP | 100.0 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 100.0 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 99.98 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 99.97 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 99.97 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 99.95 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 99.93 | |
| 3hu3_A | 489 | Transitional endoplasmic reticulum ATPase; VCP, tr | 99.93 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 99.92 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 99.92 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 99.91 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 99.89 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.89 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 99.87 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.86 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 99.82 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 99.64 | |
| 2c9o_A | 456 | RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP- | 99.61 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 99.4 | |
| 1g41_A | 444 | Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep | 99.38 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 99.27 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 99.23 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 99.23 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 99.2 | |
| 3pfi_A | 338 | Holliday junction ATP-dependent DNA helicase RUVB; | 99.19 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 99.01 | |
| 1hqc_A | 324 | RUVB; extended AAA-ATPase domain, complex with nuc | 98.97 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 98.95 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 98.94 | |
| 1r6b_X | 758 | CLPA protein; AAA+, N-terminal domain, CLPS, cryst | 98.92 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 98.9 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 98.89 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 98.88 | |
| 1g8p_A | 350 | Magnesium-chelatase 38 kDa subunit; parallel beta | 98.86 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 98.79 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 98.78 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 98.76 | |
| 3pvs_A | 447 | Replication-associated recombination protein A; ma | 98.72 | |
| 1um8_A | 376 | ATP-dependent CLP protease ATP-binding subunit CL; | 98.69 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 98.63 | |
| 2r44_A | 331 | Uncharacterized protein; putative ATPase, structur | 98.58 | |
| 2chq_A | 319 | Replication factor C small subunit; DNA-binding pr | 98.57 | |
| 1sxj_A | 516 | Activator 1 95 kDa subunit; clamp loader, processi | 98.57 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 98.57 | |
| 1iqp_A | 327 | RFCS; clamp loader, extended AAA-ATPase domain, co | 98.57 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 98.56 | |
| 3vlf_B | 88 | 26S protease regulatory subunit 7 homolog; heat re | 98.54 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 98.53 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 98.52 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 98.52 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 98.5 | |
| 3aji_B | 83 | S6C, proteasome (prosome, macropain) 26S subunit, | 98.48 | |
| 1r6b_X | 758 | CLPA protein; AAA+, N-terminal domain, CLPS, cryst | 98.47 | |
| 1jr3_A | 373 | DNA polymerase III subunit gamma; processivity, pr | 98.46 | |
| 1sxj_B | 323 | Activator 1 37 kDa subunit; clamp loader, processi | 98.46 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.44 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 98.44 | |
| 3pxg_A | 468 | Negative regulator of genetic competence CLPC/MEC; | 98.42 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 98.35 | |
| 2dzn_B | 82 | 26S protease regulatory subunit 6B homolog; ankyri | 98.25 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 98.23 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 98.19 | |
| 3nbx_X | 500 | ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu | 98.18 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 98.17 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 98.13 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.1 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 98.09 | |
| 3f9v_A | 595 | Minichromosome maintenance protein MCM; replicativ | 98.03 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 97.92 | |
| 2krk_A | 86 | 26S protease regulatory subunit 8; structural geno | 97.91 | |
| 3kw6_A | 78 | 26S protease regulatory subunit 8; structural geno | 97.88 | |
| 1a5t_A | 334 | Delta prime, HOLB; zinc finger, DNA replication; 2 | 97.77 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 97.76 | |
| 1ojl_A | 304 | Transcriptional regulatory protein ZRAR; response | 97.74 | |
| 4akg_A | 2695 | Glutathione S-transferase class-MU 26 kDa isozyme | 97.7 | |
| 1w5s_A | 412 | Origin recognition complex subunit 2 ORC2; replica | 97.6 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 97.59 | |
| 2gno_A | 305 | DNA polymerase III, gamma subunit-related protein; | 97.55 | |
| 1g41_A | 444 | Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep | 97.19 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 96.72 | |
| 2c9o_A | 456 | RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP- | 95.78 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 95.76 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 95.56 | |
| 3f8t_A | 506 | Predicted ATPase involved in replication control, | 95.56 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 95.35 | |
| 2r2a_A | 199 | Uncharacterized protein; zonular occludens toxin, | 94.99 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 94.81 | |
| 4akg_A | 2695 | Glutathione S-transferase class-MU 26 kDa isozyme | 92.17 | |
| 1ny5_A | 387 | Transcriptional regulator (NTRC family); AAA+ ATPa | 89.42 | |
| 1tue_A | 212 | Replication protein E1; helicase, replication, E1E | 88.34 | |
| 1jr3_D | 343 | DNA polymerase III, delta subunit; processivity, p | 86.59 | |
| 1u0j_A | 267 | DNA replication protein; AAA+ protein, P-loop atpa | 85.85 | |
| 3dzd_A | 368 | Transcriptional regulator (NTRC family); sigma43 a | 85.44 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 82.11 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 81.92 |
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-46 Score=399.56 Aligned_cols=263 Identities=30% Similarity=0.478 Sum_probs=211.8
Q ss_pred cccccccccccCCCCCc-----Cccccccccchhhh-hhhhhh-hhhhcccccceeecccccchhhhhhccCCCCChhHH
Q 006411 313 GVRGSFVPPIRNNGSNV-----GNMTSRISVYVLTI-MFMSIS-HTHAHNYEHVQVLIPFSSFNYSLEMLCGPDGELPEK 385 (646)
Q Consensus 313 g~~g~fv~pi~~~~~~~-----~~~~~~i~~~~~~~-~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 385 (646)
.++|.++..++.+..++ +++++.+.+.++.. +.++.. .++..++..+++|++....
T Consensus 70 ~~v~~~~~~~~~~~~iv~~~~~~~~~v~~~~~~~~~~l~~~~~v~l~~~~~~~~~~l~~~~~~----------------- 132 (405)
T 4b4t_J 70 SYVGEVIKIVSDKKVLVKVQPEGKYIVDVAKDINVKDLKASQRVCLRSDSYMLHKVLENKADP----------------- 132 (405)
T ss_dssp EEEEEEEEECTTSCEEEEESSSCEEEECCCTTSCTTTCCSSCEEEEETTTCSCCEECCCCCSC-----------------
T ss_pred ceEEEEEEEecCCeEEEEeCCCCEEEEecccccCHhhCCCcceeeeecccceeeeecCcccCc-----------------
Confidence 35677777777665443 35677777777644 555544 6777777777777655321
Q ss_pred hhhhhhhHHHHhhhhcccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC-----------
Q 006411 386 LRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP----------- 453 (646)
Q Consensus 386 lk~~ep~~~~~v~~~i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP----------- 453 (646)
.+...++.+.|+|+|+||||++++|++|+|.|.+|+++|++|..++ .||+||||||||
T Consensus 133 ----------~~~~~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAi 202 (405)
T 4b4t_J 133 ----------LVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAV 202 (405)
T ss_dssp ----------CTTSCEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHH
T ss_pred ----------hhhhccccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHH
Confidence 1134456788999999999999999999999999999999999876 788999999999
Q ss_pred --------------------CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCC--
Q 006411 454 --------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKS-- 511 (646)
Q Consensus 454 --------------------vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s-- 511 (646)
+|+++++|+.+|..|+.++||||||||||+|++ +|..
T Consensus 203 A~e~~~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~---------------------~R~~~~ 261 (405)
T 4b4t_J 203 AHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGS---------------------TRVEGS 261 (405)
T ss_dssp HHHHTCEEEEEEGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTT---------------------SCSCSS
T ss_pred HHhhCCCceEEEhHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhcc---------------------CCCCCC
Confidence 899999999999999999999999999999998 4432
Q ss_pred CCCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC-------------------
Q 006411 512 DGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS------------------- 570 (646)
Q Consensus 512 ~~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~------------------- 570 (646)
.+.+....+++++||++|||+.. ..+|+||||||+|+.||||++| |||++|+||+||.
T Consensus 262 ~~~~~~~~~~l~~lL~~lDg~~~-~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~d 340 (405)
T 4b4t_J 262 GGGDSEVQRTMLELLNQLDGFET-SKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRG 340 (405)
T ss_dssp SGGGGHHHHHHHHHHHHHHTTTC-CCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSS
T ss_pred CCCcHHHHHHHHHHHHhhhccCC-CCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCcc
Confidence 22334567899999999999987 6789999999999999999999 9999999999985
Q ss_pred -----------CCcHHHHHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 006411 571 -----------GYSGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRASVSLNELGIYEEWN 638 (646)
Q Consensus 571 -----------GySGADL~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrPSvs~~dl~~ye~w~ 638 (646)
|||||||+++|++|++.|+++ ....|+++||+.|++++.|......+..++.|+
T Consensus 341 vdl~~lA~~t~G~SGADi~~l~~eA~~~Air~--------------~~~~vt~~Df~~Al~~v~~~~~~~~~s~~k~~k 405 (405)
T 4b4t_J 341 INLRKVAEKMNGCSGADVKGVCTEAGMYALRE--------------RRIHVTQEDFELAVGKVMNKNQETAISVAKLFK 405 (405)
T ss_dssp CCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHT--------------TCSBCCHHHHHHHHHHHHHHHTCC---------
T ss_pred CCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHc--------------CCCCcCHHHHHHHHHHHhCccccccchhHhhhC
Confidence 999999999999999999976 235699999999999998766555566666553
|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-45 Score=393.18 Aligned_cols=257 Identities=29% Similarity=0.454 Sum_probs=218.8
Q ss_pred cccccccccccCCCCCc-----Cccccccccchhhh-hhhhhh-hhhhcccccceeecccccchhhhhhccCCCCChhHH
Q 006411 313 GVRGSFVPPIRNNGSNV-----GNMTSRISVYVLTI-MFMSIS-HTHAHNYEHVQVLIPFSSFNYSLEMLCGPDGELPEK 385 (646)
Q Consensus 313 g~~g~fv~pi~~~~~~~-----~~~~~~i~~~~~~~-~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 385 (646)
-++|++++.++.+..+| .++++.+.+.++.. +.++.+ .+|..++..+.+|++.....
T Consensus 104 ~~~g~~~~~~~~~~~iv~~~~~~~~~v~~~~~~~~~~l~~~~~v~l~~~~~~~~~~l~~~~d~~---------------- 167 (437)
T 4b4t_I 104 LSIGTLEEIIDDDHAIVTSPTMPDYYVSILSFVDKELLEPGCSVLLHHKTMSIVGVLQDDADPM---------------- 167 (437)
T ss_dssp EEEEEEEEECTTSEEEEECSSSCCCEEECCTTSCGGGCCTTCEEEECTTTCCEEEEECCCSSCC----------------
T ss_pred ceeEEEEEEecCCEEEEEcCCCCEEEEecccccCHhHccCCcEEEEeccCccceeecCCccCCc----------------
Confidence 35788899888776554 36788888888865 677766 78888888888888763311
Q ss_pred hhhhhhhHHHHhhhhcccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC-----------
Q 006411 386 LRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP----------- 453 (646)
Q Consensus 386 lk~~ep~~~~~v~~~i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP----------- 453 (646)
+....+.+.|+|+|+||||++++|++|+|.|.+|+++|++|..++ .||+||||||||
T Consensus 168 -----------~~~~~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAi 236 (437)
T 4b4t_I 168 -----------VSVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAV 236 (437)
T ss_dssp -----------CCCCEEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHH
T ss_pred -----------ceeeeeccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHH
Confidence 112235789999999999999999999999999999999999887 788999999999
Q ss_pred --------------------CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCC-
Q 006411 454 --------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSD- 512 (646)
Q Consensus 454 --------------------vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~- 512 (646)
+|+++++++.+|..|+..+||||||||||+|+. +|...
T Consensus 237 A~e~~~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~---------------------~R~~~~ 295 (437)
T 4b4t_I 237 ANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGT---------------------KRYDSN 295 (437)
T ss_dssp HHHHTCEEEEEESGGGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSC---------------------CCSCSS
T ss_pred HHHhCCCEEEEEHHHhhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcc---------------------cCCCCC
Confidence 899999999999999999999999999999998 44322
Q ss_pred -CCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC-------------------
Q 006411 513 -GEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS------------------- 570 (646)
Q Consensus 513 -~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~------------------- 570 (646)
..+....+++++||++|||+.. ..+|+||||||+|+.|||||+| |||++|+||+||.
T Consensus 296 ~~~~~~~~~~l~~LL~~lDg~~~-~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~d 374 (437)
T 4b4t_I 296 SGGEREIQRTMLELLNQLDGFDD-RGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSED 374 (437)
T ss_dssp CSSCCHHHHHHHHHHHHHHHCCC-SSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSC
T ss_pred CCccHHHHHHHHHHHHHhhCcCC-CCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCc
Confidence 2233567899999999999987 6789999999999999999999 9999999999985
Q ss_pred -----------CCcHHHHHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCCCCCHHHHH
Q 006411 571 -----------GYSGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRASVSLNELG 632 (646)
Q Consensus 571 -----------GySGADL~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrPSvs~~dl~ 632 (646)
|||||||+++|++|++.|+++ ....|+++||+.|++++.|+.+.++++
T Consensus 375 vdl~~LA~~T~GfSGADI~~l~~eA~~~Air~--------------~~~~It~eDf~~Al~rv~~~~~~e~le 433 (437)
T 4b4t_I 375 VNLETLVTTKDDLSGADIQAMCTEAGLLALRE--------------RRMQVTAEDFKQAKERVMKNKVEENLE 433 (437)
T ss_dssp CCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHT--------------TCSCBCHHHHHHHHHHHHHHHCCCSSS
T ss_pred CCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc--------------CCCccCHHHHHHHHHHHhCCCChhhHH
Confidence 999999999999999999976 235699999999999999987766654
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-43 Score=382.14 Aligned_cols=260 Identities=28% Similarity=0.479 Sum_probs=208.0
Q ss_pred ccccccccccCCCCCc-----Cccccccccchhhh-hhhhhh-hhhhcccccceeecccccchhhhhhccCCCCChhHHh
Q 006411 314 VRGSFVPPIRNNGSNV-----GNMTSRISVYVLTI-MFMSIS-HTHAHNYEHVQVLIPFSSFNYSLEMLCGPDGELPEKL 386 (646)
Q Consensus 314 ~~g~fv~pi~~~~~~~-----~~~~~~i~~~~~~~-~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~l 386 (646)
++|.++..++.+..+| +.+++++.+.++.. +.+... .++..++..+.+|++....
T Consensus 104 ~vg~~~~~~~~~~~iv~~~~g~~~~v~~~~~~~~~~l~~g~~v~~~~~~~~~~~~l~~~~d~------------------ 165 (437)
T 4b4t_L 104 LIGEVMKELSEEKYIVKASSGPRYIVGVRNSVDRSKLKKGVRVTLDITTLTIMRILPRETDP------------------ 165 (437)
T ss_dssp EEEEEEECSSSSCEEEEETTSCEEEECBCSSSCTTSCCTTCEEEECSSSCSEEEECCCCSCC------------------
T ss_pred eeeeheeeecCCcEEEEECCCCEEEEecccccCHhhcCCCceeeEcccchhHHHhcCcccCc------------------
Confidence 4566666666665443 24677777777755 555544 6666777777777654221
Q ss_pred hhhhhhHHHHhhhhcccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC------------
Q 006411 387 RNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP------------ 453 (646)
Q Consensus 387 k~~ep~~~~~v~~~i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP------------ 453 (646)
.+....+.+.|+|+|+||||++++|++|++.|.+|+++|++|..++ .||+||||||||
T Consensus 166 ---------~~~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA 236 (437)
T 4b4t_L 166 ---------LVYNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVA 236 (437)
T ss_dssp ---------CCSSCEEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHH
T ss_pred ---------hhheeeeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHH
Confidence 1123346679999999999999999999999999999999999876 789999999999
Q ss_pred -------------------CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCC--
Q 006411 454 -------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSD-- 512 (646)
Q Consensus 454 -------------------vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~-- 512 (646)
+|+++++++.+|..|+.++||||||||||+|+. +|...
T Consensus 237 ~e~~~~~~~v~~s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~---------------------~R~~~~~ 295 (437)
T 4b4t_L 237 ATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGG---------------------RRFSEGT 295 (437)
T ss_dssp HHHTCEEEEEEGGGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSC---------------------CCSSSCC
T ss_pred HHhCCCEEEEehhhhccccchHHHHHHHHHHHHHHhcCCceeeeeccccccc---------------------ccccCCC
Confidence 899999999999999999999999999999998 44332
Q ss_pred CCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC--------------------
Q 006411 513 GEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS-------------------- 570 (646)
Q Consensus 513 ~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~-------------------- 570 (646)
..+....+++++||++|||+.. ..+|+||||||+|+.|||||+| |||++|+||+||.
T Consensus 296 ~~~~~~~~~l~~lL~~lDg~~~-~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~ 374 (437)
T 4b4t_L 296 SADREIQRTLMELLTQMDGFDN-LGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEF 374 (437)
T ss_dssp SSTTHHHHHHHHHHHHHHSSSC-TTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCC
T ss_pred CcchHHHHHHHHHHHHhhcccC-CCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCccc
Confidence 2234567899999999999987 6789999999999999999999 8999999999985
Q ss_pred ----------CCcHHHHHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 006411 571 ----------GYSGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRASVSLNELGIYEEWNK 639 (646)
Q Consensus 571 ----------GySGADL~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrPSvs~~dl~~ye~w~k 639 (646)
||||+||+++|++|++.|+++ +...|+++||+.|++++.|+...+. +.+|.|
T Consensus 375 dl~~lA~~t~G~sGADi~~l~~eA~~~air~--------------~~~~i~~~d~~~Al~~v~~~~k~e~---~~e~~K 436 (437)
T 4b4t_L 375 DFEAAVKMSDGFNGADIRNCATEAGFFAIRD--------------DRDHINPDDLMKAVRKVAEVKKLEG---TIEYQK 436 (437)
T ss_dssp CHHHHHHTCCSCCHHHHHHHHHHHHHHHHHT--------------TCSSBCHHHHHHHHHHHHHTCC------------
T ss_pred CHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc--------------CCCCCCHHHHHHHHHHHHhccCccc---chhhhc
Confidence 999999999999999999975 2356999999999999999876544 444543
|
| >4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-43 Score=380.14 Aligned_cols=246 Identities=28% Similarity=0.497 Sum_probs=201.7
Q ss_pred Cccccccccchhhh-hhhhhh-hhhhcccccceeecccccchhhhhhccCCCCChhHHhhhhhhhHHHHhhhhcccCCCC
Q 006411 330 GNMTSRISVYVLTI-MFMSIS-HTHAHNYEHVQVLIPFSSFNYSLEMLCGPDGELPEKLRNLEPRLIEHVSNEIMDRDPH 407 (646)
Q Consensus 330 ~~~~~~i~~~~~~~-~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~lk~~ep~~~~~v~~~i~~~~p~ 407 (646)
+++++.+...++.. +.+... .+|..++..+.+|++..+.. + ...-+.+.|+
T Consensus 153 ~~~~v~~~~~~~~~~l~~g~~v~l~~~~~~i~~~lp~~~d~~--v-------------------------~~m~v~e~P~ 205 (467)
T 4b4t_H 153 AKFVVGLGERVSPTDIEEGMRVGVDRSKYNIELPLPPRIDPS--V-------------------------TMMTVEEKPD 205 (467)
T ss_dssp CCBCCCCCTTCCSSSCCTTCEECSCTTSCCCCCSSCSSSCCC--C-------------------------CCCEEESSCS
T ss_pred CeEEEecCCcCCHHHCCCCCEEEEccCcceeeecCCCccCCc--c-------------------------ceeeecCCCC
Confidence 46777777777754 777766 88888898888888763310 0 1112567899
Q ss_pred cccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC-------------------------------Cc
Q 006411 408 VRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP-------------------------------IG 455 (646)
Q Consensus 408 VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP-------------------------------vG 455 (646)
|+|+||||++++|++|+|.|.+||.+|++|..++ .||+|||||||| +|
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vG 285 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVG 285 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSS
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCC
Confidence 9999999999999999999999999999999887 889999999999 89
Q ss_pred hHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCC--CCchhhHHHHHHHHHHHcCCC
Q 006411 456 EGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSD--GEHESSRRLKTQFLIEMEGFD 533 (646)
Q Consensus 456 esek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~--~~~e~s~rilneLL~eLDGl~ 533 (646)
+++++++.+|..|+.++||||||||||+++. +|... +......+++++||++|||+.
T Consensus 286 esek~ir~lF~~Ar~~aP~IIfiDEiDai~~---------------------~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 344 (467)
T 4b4t_H 286 EGARMVRELFEMARTKKACIIFFDEIDAVGG---------------------ARFDDGAGGDNEVQRTMLELITQLDGFD 344 (467)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEECCTTTSB---------------------CCSSSSCGGGGHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHhcCCceEeecccccccc---------------------cccCcCCCccHHHHHHHHHHHHHhhccC
Confidence 9999999999999999999999999999998 44332 233456789999999999998
Q ss_pred CCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC------------------------------CCcHHHHHHHH
Q 006411 534 SGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS------------------------------GYSGSDMKNLV 581 (646)
Q Consensus 534 ~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~------------------------------GySGADL~~Lc 581 (646)
. ..+|+||||||+|+.||||++| |||++|+||+||. |||||||++||
T Consensus 345 ~-~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~ 423 (467)
T 4b4t_H 345 P-RGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVC 423 (467)
T ss_dssp C-TTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHH
T ss_pred C-CCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHH
Confidence 7 6789999999999999999999 9999999999985 99999999999
Q ss_pred HHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCCCCC-HHHHHHHHHHH
Q 006411 582 KEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRASVS-LNELGIYEEWN 638 (646)
Q Consensus 582 ~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrPSvs-~~dl~~ye~w~ 638 (646)
++|++.|+++ ....|+++||+.|++++.++.. ......|.+|+
T Consensus 424 ~eAa~~Air~--------------~~~~it~~Df~~Al~kV~~g~~k~s~~~~y~~~n 467 (467)
T 4b4t_H 424 TEAGMFAIRA--------------RRKVATEKDFLKAVDKVISGYKKFSSTSRYMQYN 467 (467)
T ss_dssp HHHHHHHHHH--------------TCSSBCHHHHHHHHHHHHHHHCC-----------
T ss_pred HHHHHHHHHc--------------CCCccCHHHHHHHHHHHhcCcccchhHHHHHhhC
Confidence 9999999986 2256899999999999976543 35667888886
|
| >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-43 Score=409.42 Aligned_cols=240 Identities=33% Similarity=0.611 Sum_probs=166.2
Q ss_pred CCCChhHHhhhhhhhHHHHhhhhcccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC---
Q 006411 378 PDGELPEKLRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP--- 453 (646)
Q Consensus 378 ~~~~~~~~lk~~ep~~~~~v~~~i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP--- 453 (646)
...+|..+++.+.|... .++..+.|+|+|+||+|++++|+.|++.|.+|+++|++|..++ .||+||||||||
T Consensus 448 ~~~Df~~Al~~~~ps~~----r~~~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtG 523 (806)
T 3cf2_A 448 TMDDFRWALSQSNPSAL----RETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCG 523 (806)
T ss_dssp CTTHHHHHHSSSSCCCC----CCCCCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSS
T ss_pred eHHHHHHHHHhCCCccc----ccccccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCC
Confidence 44566777777776543 3456678999999999999999999999999999999999876 789999999999
Q ss_pred ----------------------------CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhh
Q 006411 454 ----------------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRF 505 (646)
Q Consensus 454 ----------------------------vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~ 505 (646)
+|+++++|+.+|+.|+..+||||||||||+|++
T Consensus 524 KT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~------------------- 584 (806)
T 3cf2_A 524 KTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAK------------------- 584 (806)
T ss_dssp HHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------------
T ss_pred chHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhh-------------------
Confidence 899999999999999999999999999999998
Q ss_pred ccccCC--CCCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC-----------
Q 006411 506 YFQRKS--DGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS----------- 570 (646)
Q Consensus 506 ~~~R~s--~~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~----------- 570 (646)
+|+. ...+..+++++++||++|||+.. ..+|+||||||+||.||||++| |||++||||+||.
T Consensus 585 --~R~~~~~~~~~~~~rv~~~lL~~mdg~~~-~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 585 --ARGGNIGDGGGAADRVINQILTEMDGMST-KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp ---------------CHHHHHHHHHHHSSCS-SSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTS
T ss_pred --ccCCCCCCCchHHHHHHHHHHHHHhCCCC-CCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHh
Confidence 4432 23445678999999999999987 6789999999999999999999 9999999999985
Q ss_pred -------------------CCcHHHHHHHHHHHhhhHHHHHHHhchhhh-----------hhcccCCCCccHHHHHHHHh
Q 006411 571 -------------------GYSGSDMKNLVKEASMGPLREALRQGIEIT-----------RLQKEDMQPVTLQDFENALP 620 (646)
Q Consensus 571 -------------------GySGADL~~Lc~eAa~~Airr~l~~~~~~~-----------~~~~~~~~~Vt~eDFe~AL~ 620 (646)
||||+||+++|++|++.|+++.+....... ....+...+|+++||+.||+
T Consensus 662 ~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~ 741 (806)
T 3cf2_A 662 RKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMR 741 (806)
T ss_dssp SCC--CCC----------------CHHHHHHHHHHHHHHHHHC-----------------------CCC----CCTTTC-
T ss_pred cCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccccccccccCccCHHHHHHHHH
Confidence 999999999999999999999765322110 01123346799999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHhCC
Q 006411 621 QVRASVSLNELGIYEEWNKQFGS 643 (646)
Q Consensus 621 kvrPSvs~~dl~~ye~w~k~fg~ 643 (646)
+++|||+.++++.|++|.++|+.
T Consensus 742 ~~~pSvs~~~l~~y~~~~~~f~~ 764 (806)
T 3cf2_A 742 FARRSVSDNDIRKYEMFAQTLQQ 764 (806)
T ss_dssp --------------CCCC-----
T ss_pred hCCCCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999988863
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-42 Score=375.39 Aligned_cols=256 Identities=31% Similarity=0.548 Sum_probs=211.3
Q ss_pred ccccccccccCCCCCc-----Cccccccccchhhh-hhhhhh-hhhhcccccceeecccccchhhhhhccCCCCChhHHh
Q 006411 314 VRGSFVPPIRNNGSNV-----GNMTSRISVYVLTI-MFMSIS-HTHAHNYEHVQVLIPFSSFNYSLEMLCGPDGELPEKL 386 (646)
Q Consensus 314 ~~g~fv~pi~~~~~~~-----~~~~~~i~~~~~~~-~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~l 386 (646)
++|++++.++.+..++ ..+++++.+.++.. +.++.. .+|..++..+.+|++..... +
T Consensus 95 ~vg~~~e~~d~~~~iv~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~d~~--v-------------- 158 (428)
T 4b4t_K 95 VIGQFLEPIDQNTGIVSSTTGMSYVVRILSTLDRELLKPSMSVALHRHSNALVDILPPDSDSS--I-------------- 158 (428)
T ss_dssp EEEEEEEEEETTEEEEEETTSCEEEECBCSSSCTTTCCTTCEEEECSSSCCEEEEECSCCCCS--S--------------
T ss_pred eeeEEEEEccCCeeEEecCCCCEEEEeccccccHhhCCCCceeeeecchhhHHhhcCcccCcc--h--------------
Confidence 4678888888766543 24677777777755 555555 67777777778777653210 0
Q ss_pred hhhhhhHHHHhhhhcccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC------------
Q 006411 387 RNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP------------ 453 (646)
Q Consensus 387 k~~ep~~~~~v~~~i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP------------ 453 (646)
....+.+.|+|+|+||||++++|++|++.|.+|+.+|++|..++ .||+||||||||
T Consensus 159 -----------~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA 227 (428)
T 4b4t_K 159 -----------SVMGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVA 227 (428)
T ss_dssp -----------CCCEEESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHH
T ss_pred -----------hhccCCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHH
Confidence 11224678999999999999999999999999999999999876 789999999999
Q ss_pred -------------------CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCC--C
Q 006411 454 -------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKS--D 512 (646)
Q Consensus 454 -------------------vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s--~ 512 (646)
+|+++++|+.+|..|+.++||||||||||+++. .|.. .
T Consensus 228 ~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~---------------------~R~~~~~ 286 (428)
T 4b4t_K 228 NSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIAT---------------------KRFDAQT 286 (428)
T ss_dssp HHHTCEEEEEEGGGTCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHC---------------------SCSSSCS
T ss_pred HHhCCCeEEEecchhhccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhc---------------------cccCCCC
Confidence 899999999999999999999999999999998 3322 2
Q ss_pred CCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeC-CCCC-------------------
Q 006411 513 GEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIP-LPSS------------------- 570 (646)
Q Consensus 513 ~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~Ip-lPd~------------------- 570 (646)
..+....+++++||++|||+.. ..+|+||||||+|+.||||++| |||++|+|| +|+.
T Consensus 287 ~~~~~~~r~l~~lL~~ldg~~~-~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~ 365 (428)
T 4b4t_K 287 GSDREVQRILIELLTQMDGFDQ-STNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPE 365 (428)
T ss_dssp CCCCHHHHHHHHHHHHHHHSCS-SCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTT
T ss_pred CCChHHHHHHHHHHHHhhCCCC-CCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcc
Confidence 2334568899999999999987 6789999999999999999999 999999997 8974
Q ss_pred -----------CCcHHHHHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhh-cCCCCCHHHHH
Q 006411 571 -----------GYSGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQ-VRASVSLNELG 632 (646)
Q Consensus 571 -----------GySGADL~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~k-vrPSvs~~dl~ 632 (646)
|||||||+++|++|++.|+++ ....|+++||+.|+.+ ++++.+.++++
T Consensus 366 ~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~--------------~~~~i~~~d~~~A~~~~~~~~~~~~~~d 425 (428)
T 4b4t_K 366 ADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRK--------------NRYVILQSDLEEAYATQVKTDNTVDKFD 425 (428)
T ss_dssp CCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHT--------------TCSSBCHHHHHHHHHHHSCSCCCSSCCC
T ss_pred cCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC--------------CCCCCCHHHHHHHHHHhhCccCCccHhh
Confidence 999999999999999999976 2356999999999976 57777665543
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-42 Score=370.55 Aligned_cols=235 Identities=30% Similarity=0.488 Sum_probs=197.2
Q ss_pred ccccccccchhhh-hhhhhh-hhhhcccccceeecccccchhhhhhccCCCCChhHHhhhhhhhHHHHhhhhcccCCCCc
Q 006411 331 NMTSRISVYVLTI-MFMSIS-HTHAHNYEHVQVLIPFSSFNYSLEMLCGPDGELPEKLRNLEPRLIEHVSNEIMDRDPHV 408 (646)
Q Consensus 331 ~~~~~i~~~~~~~-~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~lk~~ep~~~~~v~~~i~~~~p~V 408 (646)
++++.+.+.++.. +.++.. .+|..++..+++|++..... +......+.|++
T Consensus 126 ~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~l~~~~d~~---------------------------~~~~~~~~~p~~ 178 (434)
T 4b4t_M 126 TVFLPMVGLVDPDKLKPNDLVGVNKDSYLILDTLPSEFDSR---------------------------VKAMEVDEKPTE 178 (434)
T ss_dssp EEEEECCSSSCTTTSCSSEEEEECSSSCSEEEEEEESSSCS---------------------------CSCCEEESSCSC
T ss_pred eEEEecccccCHhHCCCCCEEeEcCcchhhheecCcccCch---------------------------hhhcccCCCCCC
Confidence 3455555666543 555544 66777777788887652210 112235678999
Q ss_pred ccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC-------------------------------Cch
Q 006411 409 RWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP-------------------------------IGE 456 (646)
Q Consensus 409 sfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP-------------------------------vGe 456 (646)
+|+||||++++|++|++.|++|+++|++|..++ .||+|||||||| +|+
T Consensus 179 t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGe 258 (434)
T 4b4t_M 179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGE 258 (434)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSH
T ss_pred ChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccch
Confidence 999999999999999999999999999999877 789999999999 899
Q ss_pred HHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCC--CchhhHHHHHHHHHHHcCCCC
Q 006411 457 GEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDG--EHESSRRLKTQFLIEMEGFDS 534 (646)
Q Consensus 457 sek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~--~~e~s~rilneLL~eLDGl~~ 534 (646)
++++++.+|..|+.++||||||||||+|+. +|.... ......+++++||++|||+.+
T Consensus 259 se~~ir~lF~~A~~~aP~IifiDEiDal~~---------------------~R~~~~~~~~~~~~~~~~~lL~~ldg~~~ 317 (434)
T 4b4t_M 259 GAKLVRDAFALAKEKAPTIIFIDELDAIGT---------------------KRFDSEKSGDREVQRTMLELLNQLDGFSS 317 (434)
T ss_dssp HHHHHHHHHHHHHHHCSEEEEEECTHHHHC---------------------CCSSGGGGTTHHHHHHHHHHHHHHTTSCS
T ss_pred HHHHHHHHHHHHHhcCCeEEeecchhhhhh---------------------ccCCCCCCCchHHHHHHHHHHHHhhccCC
Confidence 999999999999999999999999999998 443221 223456789999999999987
Q ss_pred CCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC------------------------------CCcHHHHHHHHH
Q 006411 535 GSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS------------------------------GYSGSDMKNLVK 582 (646)
Q Consensus 535 ~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~------------------------------GySGADL~~Lc~ 582 (646)
.++|+||||||+|+.||||++| |||++|+||+||. ||||+||+++|+
T Consensus 318 -~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~ 396 (434)
T 4b4t_M 318 -DDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTV 396 (434)
T ss_dssp -SCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHH
T ss_pred -CCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHH
Confidence 6789999999999999999999 9999999999985 999999999999
Q ss_pred HHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCCCCCH
Q 006411 583 EASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRASVSL 628 (646)
Q Consensus 583 eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrPSvs~ 628 (646)
+|++.|+++ ....|+++||+.|+++++|+.+.
T Consensus 397 eA~~~a~r~--------------~~~~i~~~Df~~Al~~v~~~~~~ 428 (434)
T 4b4t_M 397 EAGMIALRN--------------GQSSVKHEDFVEGISEVQARKSK 428 (434)
T ss_dssp HHHHHHHHH--------------TCSSBCHHHHHHHHHSCSSSCCC
T ss_pred HHHHHHHHc--------------CCCCcCHHHHHHHHHHHhCCCCc
Confidence 999999986 23579999999999999998764
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-38 Score=324.79 Aligned_cols=222 Identities=42% Similarity=0.749 Sum_probs=193.6
Q ss_pred cccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCC---------------------------
Q 006411 401 IMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP--------------------------- 453 (646)
Q Consensus 401 i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPP--------------------------- 453 (646)
|+.+.|+++|+||+|++++|+.|++.|.+|+.+|++|.+...|++||||||||
T Consensus 2 i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~ 81 (322)
T 1xwi_A 2 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSD 81 (322)
T ss_dssp CEEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCS
T ss_pred eeecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHH
Confidence 45678999999999999999999999999999999999777888999999999
Q ss_pred -----CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHH
Q 006411 454 -----IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIE 528 (646)
Q Consensus 454 -----vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~e 528 (646)
.|++++.++.+|..|+..+|+||||||||.++. ++. ....+...+++++||.+
T Consensus 82 l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~---------------------~~~-~~~~~~~~~~~~~ll~~ 139 (322)
T 1xwi_A 82 LVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCG---------------------SRS-ENESEAARRIKTEFLVQ 139 (322)
T ss_dssp SCCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGC---------------------CSS-SCCTTHHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhcc---------------------ccc-cccchHHHHHHHHHHHH
Confidence 577899999999999999999999999999987 443 23455678999999999
Q ss_pred HcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC-------------------------------CCcHHHH
Q 006411 529 MEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS-------------------------------GYSGSDM 577 (646)
Q Consensus 529 LDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~-------------------------------GySGADL 577 (646)
||++.....+|+||+|||+|+.||++++|||+++|++++|+. ||||+||
T Consensus 140 ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl 219 (322)
T 1xwi_A 140 MQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADI 219 (322)
T ss_dssp HHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHH
T ss_pred HhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHH
Confidence 999976567899999999999999999999999999999975 9999999
Q ss_pred HHHHHHHhhhHHHHHHHhchh---------------------------------hhhh--cccCCCCccHHHHHHHHhhc
Q 006411 578 KNLVKEASMGPLREALRQGIE---------------------------------ITRL--QKEDMQPVTLQDFENALPQV 622 (646)
Q Consensus 578 ~~Lc~eAa~~Airr~l~~~~~---------------------------------~~~~--~~~~~~~Vt~eDFe~AL~kv 622 (646)
..||++|++.|+++....... .... ......+|+++||+.||+++
T Consensus 220 ~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~al~~~ 299 (322)
T 1xwi_A 220 SIIVRDALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNT 299 (322)
T ss_dssp HHHHHHHHTHHHHHHHHCSEEEEEEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhccccccccccccccccccccccccchhhccccccccccccCCCcCHHHHHHHHHhC
Confidence 999999999999997642100 0000 01123589999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhCCC
Q 006411 623 RASVSLNELGIYEEWNKQFGSL 644 (646)
Q Consensus 623 rPSvs~~dl~~ye~w~k~fg~~ 644 (646)
+||+++++++.|++|.++||+.
T Consensus 300 ~ps~~~~~~~~~~~~~~~~~~~ 321 (322)
T 1xwi_A 300 KPTVNEHDLLKLKKFTEDFGQE 321 (322)
T ss_dssp CCSCCHHHHHHHHHHHHTTCSC
T ss_pred CCCCCHHHHHHHHHHHHHHccC
Confidence 9999999999999999999963
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-36 Score=309.73 Aligned_cols=223 Identities=43% Similarity=0.794 Sum_probs=192.3
Q ss_pred hhcccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCC-------------------------
Q 006411 399 NEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP------------------------- 453 (646)
Q Consensus 399 ~~i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPP------------------------- 453 (646)
..++.+.|+++|+||+|++.+|+.|++.+.+|+.+|++|.....|++||||||||
T Consensus 6 ~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~ 85 (322)
T 3eie_A 6 TAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSS 85 (322)
T ss_dssp CCSEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHH
T ss_pred cceeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchH
Confidence 4567889999999999999999999999999999999999877889999999999
Q ss_pred ------CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHH
Q 006411 454 ------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLI 527 (646)
Q Consensus 454 ------vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~ 527 (646)
.|+.++.++.+|..|+..+|+||||||||.|.. .+ ....++..++++++||.
T Consensus 86 ~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~---------------------~~-~~~~~~~~~~~~~~ll~ 143 (322)
T 3eie_A 86 DLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTG---------------------TR-GEGESEASRRIKTELLV 143 (322)
T ss_dssp HHHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSC---------------------C-------CCTHHHHHHHHH
T ss_pred HHhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhc---------------------cC-CCCcchHHHHHHHHHHH
Confidence 678899999999999999999999999999987 33 23344567889999999
Q ss_pred HHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC-------------------------------CCcHHH
Q 006411 528 EMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS-------------------------------GYSGSD 576 (646)
Q Consensus 528 eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~-------------------------------GySGAD 576 (646)
.|+++.....+|+||+|||+|+.||++++|||++.|++++|+. ||+|+|
T Consensus 144 ~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~d 223 (322)
T 3eie_A 144 QMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSD 223 (322)
T ss_dssp HHGGGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHH
T ss_pred HhccccccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHH
Confidence 9999975567899999999999999999999999999999975 999999
Q ss_pred HHHHHHHHhhhHHHHHHHhchh---------------------------hhhh--cccCCCCccHHHHHHHHhhcCCCCC
Q 006411 577 MKNLVKEASMGPLREALRQGIE---------------------------ITRL--QKEDMQPVTLQDFENALPQVRASVS 627 (646)
Q Consensus 577 L~~Lc~eAa~~Airr~l~~~~~---------------------------~~~~--~~~~~~~Vt~eDFe~AL~kvrPSvs 627 (646)
|..+|++|++.++++....... .... ......+|+++||+.|++.++||++
T Consensus 224 i~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~~ 303 (322)
T 3eie_A 224 IAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVN 303 (322)
T ss_dssp HHHHHHHHTTHHHHHHHHCEEEEECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCCCC
Confidence 9999999999999997643100 0000 0112367999999999999999999
Q ss_pred HHHHHHHHHHHHHhCC
Q 006411 628 LNELGIYEEWNKQFGS 643 (646)
Q Consensus 628 ~~dl~~ye~w~k~fg~ 643 (646)
.+++..|++|.++||+
T Consensus 304 ~~~~~~~~~~~~~~~~ 319 (322)
T 3eie_A 304 EDDLLKQEQFTRDFGQ 319 (322)
T ss_dssp TTHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999999999996
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-35 Score=311.68 Aligned_cols=228 Identities=43% Similarity=0.775 Sum_probs=181.6
Q ss_pred HHHhhhhcccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCC--------------------
Q 006411 394 IEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP-------------------- 453 (646)
Q Consensus 394 ~~~v~~~i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPP-------------------- 453 (646)
.+.+...+....|+++|+||+|++.+++.|++.+.+|+.+|++|.....|++||||||||
T Consensus 34 ~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~ 113 (355)
T 2qp9_X 34 RGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFF 113 (355)
T ss_dssp -------------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEE
T ss_pred HHHHhhhhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 344456677789999999999999999999999999999999999877889999999999
Q ss_pred -----------CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHH
Q 006411 454 -----------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLK 522 (646)
Q Consensus 454 -----------vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~ril 522 (646)
.|+.++.++.+|..|+..+|+||||||||.|.. .+. ...+...++++
T Consensus 114 ~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~---------------------~r~-~~~~~~~~~~~ 171 (355)
T 2qp9_X 114 SVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTG---------------------TRG-EGESEASRRIK 171 (355)
T ss_dssp EEEHHHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC----------------------------CTHHHHHH
T ss_pred EeeHHHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcc---------------------cCC-CCcchHHHHHH
Confidence 577888999999999999999999999999987 332 23455678999
Q ss_pred HHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC-------------------------------C
Q 006411 523 TQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS-------------------------------G 571 (646)
Q Consensus 523 neLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~-------------------------------G 571 (646)
++||..|+++.....+|+||+|||+|+.||++++|||++.|++++|+. |
T Consensus 172 ~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G 251 (355)
T 2qp9_X 172 TELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEG 251 (355)
T ss_dssp HHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTT
T ss_pred HHHHHHhhcccccCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCC
Confidence 999999999976557899999999999999999999999999999974 9
Q ss_pred CcHHHHHHHHHHHhhhHHHHHHHhchh---------------------------hhhh--cccCCCCccHHHHHHHHhhc
Q 006411 572 YSGSDMKNLVKEASMGPLREALRQGIE---------------------------ITRL--QKEDMQPVTLQDFENALPQV 622 (646)
Q Consensus 572 ySGADL~~Lc~eAa~~Airr~l~~~~~---------------------------~~~~--~~~~~~~Vt~eDFe~AL~kv 622 (646)
|+|+||..+|++|++.|+++....... ...+ ......+|+++||+.||+++
T Consensus 252 ~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~ 331 (355)
T 2qp9_X 252 YSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKST 331 (355)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHCSEEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHc
Confidence 999999999999999999986532100 0000 11134679999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhCC
Q 006411 623 RASVSLNELGIYEEWNKQFGS 643 (646)
Q Consensus 623 rPSvs~~dl~~ye~w~k~fg~ 643 (646)
+||++++++..|++|.++||+
T Consensus 332 ~ps~~~~~~~~~~~~~~~~~~ 352 (355)
T 2qp9_X 332 RPTVNEDDLLKQEQFTRDFGQ 352 (355)
T ss_dssp CCSSCHHHHHHHHHHHHHTC-
T ss_pred CCCCCHHHHHHHHHHHHHhcc
Confidence 999999999999999999996
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-35 Score=311.37 Aligned_cols=239 Identities=61% Similarity=1.083 Sum_probs=200.6
Q ss_pred hhHHhhhhhhhHHHHhhhhcccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCC--------
Q 006411 382 LPEKLRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP-------- 453 (646)
Q Consensus 382 ~~~~lk~~ep~~~~~v~~~i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPP-------- 453 (646)
..+.|+.+++.+++.+.++++...++++|+||+|++.+++.|++.+.+|+.++++|.....++++|||||||
T Consensus 55 ~~~~l~~~~~~~~~~i~~~i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 55 VDERLKNLEPKMIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp --CCSTTSCHHHHHHHHHHTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHH
T ss_pred HHHHhccCChHHHHHHHhhcccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHH
Confidence 445677888889999999999999999999999999999999999999999999998877888999999999
Q ss_pred -----------------------CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccC
Q 006411 454 -----------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRK 510 (646)
Q Consensus 454 -----------------------vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~ 510 (646)
.|+.++.++.+|..|+..+|+||||||||.|+. .+
T Consensus 135 ~aia~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~---------------------~~- 192 (357)
T 3d8b_A 135 KCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLS---------------------QR- 192 (357)
T ss_dssp HHHHHHTTCEEEEEEGGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTB---------------------C--
T ss_pred HHHHHHcCCeEEEEehHHhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhc---------------------cC-
Confidence 567888999999999999999999999999987 33
Q ss_pred CCCCchhhHHHHHHHHHHHcCCCC-CCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC-------------------
Q 006411 511 SDGEHESSRRLKTQFLIEMEGFDS-GSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS------------------- 570 (646)
Q Consensus 511 s~~~~e~s~rilneLL~eLDGl~~-~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~------------------- 570 (646)
..+.+....+++++||..|+++.. ...+|+||+|||+++.||++++|||+..+++++|+.
T Consensus 193 ~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~ 272 (357)
T 3d8b_A 193 GDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLS 272 (357)
T ss_dssp -----CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCC
T ss_pred CCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCcc
Confidence 233455678899999999999864 246899999999999999999999999999999974
Q ss_pred ------------CCcHHHHHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 006411 571 ------------GYSGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRASVSLNELGIYEEWN 638 (646)
Q Consensus 571 ------------GySGADL~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrPSvs~~dl~~ye~w~ 638 (646)
||+|+||..||++|++.++++... ............+|+++||..|+.+++||++.++++.|++|.
T Consensus 273 ~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~--~~~~~~~~~~~~~i~~~d~~~al~~~~ps~~~~~~~~~~~~~ 350 (357)
T 3d8b_A 273 EEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQT--ADIATITPDQVRPIAYIDFENAFRTVRPSVSPKDLELYENWN 350 (357)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC------------CCCBCHHHHHHHHHHHGGGCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhh--hhhccccccccCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 999999999999999999986311 111112223457899999999999999999999999999999
Q ss_pred HHhCCC
Q 006411 639 KQFGSL 644 (646)
Q Consensus 639 k~fg~~ 644 (646)
++||+.
T Consensus 351 ~~~g~~ 356 (357)
T 3d8b_A 351 KTFGCG 356 (357)
T ss_dssp HHHSCC
T ss_pred HHhCCC
Confidence 999974
|
| >2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-36 Score=322.13 Aligned_cols=231 Identities=42% Similarity=0.749 Sum_probs=190.5
Q ss_pred hhHHHHhhhhcccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCC-----------------
Q 006411 391 PRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP----------------- 453 (646)
Q Consensus 391 p~~~~~v~~~i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPP----------------- 453 (646)
..+.+.+...+....|+++|+||+|++.+++.|++.+.+|+.+|++|.+...|++||||||||
T Consensus 114 ~~~~~~~~~~i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~ 193 (444)
T 2zan_A 114 KKLQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN 193 (444)
T ss_dssp ----------CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS
T ss_pred HHHHHHhhcceeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC
Confidence 345556677788899999999999999999999999999999999998766788999999999
Q ss_pred ---------------CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhh
Q 006411 454 ---------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESS 518 (646)
Q Consensus 454 ---------------vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s 518 (646)
.|+.++.++.+|..|+..+|+||||||||.+++ .+. ...++..
T Consensus 194 ~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~---------------------~~~-~~~~~~~ 251 (444)
T 2zan_A 194 STFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCG---------------------SRS-ENESEAA 251 (444)
T ss_dssp SEEEEECCC---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCC---------------------CSS-CCCCGGG
T ss_pred CCEEEEeHHHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcc---------------------CCC-CccccHH
Confidence 455667889999999999999999999999987 443 3345667
Q ss_pred HHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC----------------------------
Q 006411 519 RRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS---------------------------- 570 (646)
Q Consensus 519 ~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~---------------------------- 570 (646)
.+++++||..|+++.....+|+||+|||+|+.||++++|||++.+++++|+.
T Consensus 252 ~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~ 331 (444)
T 2zan_A 252 RRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGR 331 (444)
T ss_dssp HHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 8999999999999875467899999999999999999999999999999975
Q ss_pred ---CCcHHHHHHHHHHHhhhHHHHHHHhch-h-----------------hh---------------hhc--ccCCCCccH
Q 006411 571 ---GYSGSDMKNLVKEASMGPLREALRQGI-E-----------------IT---------------RLQ--KEDMQPVTL 612 (646)
Q Consensus 571 ---GySGADL~~Lc~eAa~~Airr~l~~~~-~-----------------~~---------------~~~--~~~~~~Vt~ 612 (646)
||||+||..+|++|++.|+++.+.... . .+ ... .....+|++
T Consensus 332 ~t~G~sgadl~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 411 (444)
T 2zan_A 332 KTDGYSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSM 411 (444)
T ss_dssp HTTTCCHHHHHHHHHHHHTHHHHHHHHCSEEEEECCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTCBCCCCEEH
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccccccccCCCCcccchhcccccCchhhccCCccCH
Confidence 999999999999999999999764310 0 00 000 012358999
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHhCC
Q 006411 613 QDFENALPQVRASVSLNELGIYEEWNKQFGS 643 (646)
Q Consensus 613 eDFe~AL~kvrPSvs~~dl~~ye~w~k~fg~ 643 (646)
+||+.||++++||+++++++.|++|+++||+
T Consensus 412 ~df~~a~~~~~ps~~~~~~~~~~~~~~~~~~ 442 (444)
T 2zan_A 412 WDMLRSLSSTKPTVNEQDLLKLKKFTEDFGQ 442 (444)
T ss_dssp HHHHHHHHTCCCSCCHHHHHHHHHHTSSCTT
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999996
|
| >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-35 Score=340.76 Aligned_cols=217 Identities=33% Similarity=0.565 Sum_probs=187.3
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC----------------------------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP---------------------------- 453 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP---------------------------- 453 (646)
...|.|+|+||||++++|++|+|+|.+||++|++|..++ .||+||||||||
T Consensus 196 ~~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~ 275 (806)
T 3cf2_A 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 275 (806)
T ss_dssp CCSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHH
T ss_pred ccCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhh
Confidence 356899999999999999999999999999999999987 899999999999
Q ss_pred ---CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHc
Q 006411 454 ---IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEME 530 (646)
Q Consensus 454 ---vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLD 530 (646)
+|++++.++.+|+.|+.++||||||||||+|++ +|. ...++..++++++||.+||
T Consensus 276 sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~---------------------~r~-~~~~~~~~riv~~LL~~md 333 (806)
T 3cf2_A 276 SKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAP---------------------KRE-KTHGEVERRIVSQLLTLMD 333 (806)
T ss_dssp SSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCC---------------------TTT-TCCCTTHHHHHHHHHTHHH
T ss_pred cccchHHHHHHHHHHHHHHHcCCeEEEEehhccccc---------------------ccC-CCCChHHHHHHHHHHHHHh
Confidence 899999999999999999999999999999998 443 3344566899999999999
Q ss_pred CCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC------------------------------CCcHHHHH
Q 006411 531 GFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS------------------------------GYSGSDMK 578 (646)
Q Consensus 531 Gl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~------------------------------GySGADL~ 578 (646)
|+.. ..+|+||+|||+|+.||+|++| |||++|+|++||. ||+|+||.
T Consensus 334 g~~~-~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~ 412 (806)
T 3cf2_A 334 GLKQ-RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLA 412 (806)
T ss_dssp HCCG-GGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHH
T ss_pred cccc-cCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHH
Confidence 9987 5689999999999999999999 9999999999985 99999999
Q ss_pred HHHHHHhhhHHHHHHHhchhhhh---hcccCCCCccHHHHHHHHhhcCCC-----------CCHHHHHHHHHHHHHhC
Q 006411 579 NLVKEASMGPLREALRQGIEITR---LQKEDMQPVTLQDFENALPQVRAS-----------VSLNELGIYEEWNKQFG 642 (646)
Q Consensus 579 ~Lc~eAa~~Airr~l~~~~~~~~---~~~~~~~~Vt~eDFe~AL~kvrPS-----------vs~~dl~~ye~w~k~fg 642 (646)
.||++|++.|+++.......... ........|+++||..|+..++|+ ++|+++.++++.+++..
T Consensus 413 ~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~k~~l~ 490 (806)
T 3cf2_A 413 ALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQ 490 (806)
T ss_dssp HHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHHHHHHT
T ss_pred HHHHHHHHHHHHhccccccccccccchhhhccceeeHHHHHHHHHhCCCcccccccccCCCCCHHHhCCHHHHHHHHH
Confidence 99999999999987543211100 011123468999999999999864 67889888888877654
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-34 Score=291.19 Aligned_cols=222 Identities=36% Similarity=0.666 Sum_probs=186.3
Q ss_pred hhcccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC------------------------
Q 006411 399 NEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP------------------------ 453 (646)
Q Consensus 399 ~~i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP------------------------ 453 (646)
+++..+.|+++|+||+|++.+++.|++.+.+|+.+|+.|..++ .++++|||||||
T Consensus 3 ~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~ 82 (301)
T 3cf0_A 3 RETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKG 82 (301)
T ss_dssp CCCCEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECH
T ss_pred ccccccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEh
Confidence 3556778999999999999999999999999999999999776 678999999999
Q ss_pred -------CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCC--CCCchhhHHHHHH
Q 006411 454 -------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKS--DGEHESSRRLKTQ 524 (646)
Q Consensus 454 -------vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s--~~~~e~s~rilne 524 (646)
+|+.++.++.+|+.|+...|+||||||||.|+. .+.. ........+++++
T Consensus 83 ~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~---------------------~~~~~~~~~~~~~~~~~~~ 141 (301)
T 3cf0_A 83 PELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAK---------------------ARGGNIGDGGGAADRVINQ 141 (301)
T ss_dssp HHHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHH---------------------HHTTTTCCSSCSCCHHHHH
T ss_pred HHHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhh---------------------ccCCCcCCcchHHHHHHHH
Confidence 456667889999999999999999999999987 2211 1112334678999
Q ss_pred HHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC------------------------------CC
Q 006411 525 FLIEMEGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS------------------------------GY 572 (646)
Q Consensus 525 LL~eLDGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~------------------------------Gy 572 (646)
||..||++.. ..+|+||+|||+|+.||++++| ||++.|+|++|+. ||
T Consensus 142 lL~~l~~~~~-~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~ 220 (301)
T 3cf0_A 142 ILTEMDGMST-KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGF 220 (301)
T ss_dssp HHHHHHSSCT-TSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSC
T ss_pred HHHHhhcccC-CCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCC
Confidence 9999999876 5689999999999999999999 9999999999974 99
Q ss_pred cHHHHHHHHHHHhhhHHHHHHHhchhhhh--------h---cccCCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHh
Q 006411 573 SGSDMKNLVKEASMGPLREALRQGIEITR--------L---QKEDMQPVTLQDFENALPQVRASVSLNELGIYEEWNKQF 641 (646)
Q Consensus 573 SGADL~~Lc~eAa~~Airr~l~~~~~~~~--------~---~~~~~~~Vt~eDFe~AL~kvrPSvs~~dl~~ye~w~k~f 641 (646)
+|+||+++|++|++.|+++.+........ . .......|+++||+.||++++||++++++..|++|+++|
T Consensus 221 sg~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~~~~~~~~~~~~~~~~ 300 (301)
T 3cf0_A 221 SGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTL 300 (301)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHC--------------------CCCBCHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999886543211000 0 012235799999999999999999999999999999998
Q ss_pred C
Q 006411 642 G 642 (646)
Q Consensus 642 g 642 (646)
.
T Consensus 301 ~ 301 (301)
T 3cf0_A 301 Q 301 (301)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.98 E-value=5.9e-32 Score=272.73 Aligned_cols=229 Identities=51% Similarity=0.922 Sum_probs=186.9
Q ss_pred hHHHHhhhhcccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCC------------------
Q 006411 392 RLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP------------------ 453 (646)
Q Consensus 392 ~~~~~v~~~i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPP------------------ 453 (646)
.+.+.+.+++....|+++|+||+|.+.+++.|++.+.+|+.+|++|.+.+.++++|||||||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~ 81 (297)
T 3b9p_A 2 KLVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSAT 81 (297)
T ss_dssp CHHHHHHTTTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC
Confidence 35667778888899999999999999999999999999999999999887888999999999
Q ss_pred -------------CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHH
Q 006411 454 -------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRR 520 (646)
Q Consensus 454 -------------vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~r 520 (646)
.|+++..++.+|..|....|+||||||||.++. .+. ...++...+
T Consensus 82 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~---------------------~~~-~~~~~~~~~ 139 (297)
T 3b9p_A 82 FLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLS---------------------ERS-SSEHEASRR 139 (297)
T ss_dssp EEEEESTTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSB---------------------CC------CCSHH
T ss_pred eEEeeHHHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhcc---------------------ccc-cCcchHHHH
Confidence 566788999999999999999999999999987 332 223445578
Q ss_pred HHHHHHHHHcCCCCC--CCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC----------------------------
Q 006411 521 LKTQFLIEMEGFDSG--SEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS---------------------------- 570 (646)
Q Consensus 521 ilneLL~eLDGl~~~--~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~---------------------------- 570 (646)
+.++||..|+++... ..+|+||+|||+|+.||++++|||+..+++++|+.
T Consensus 140 ~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~ 219 (297)
T 3b9p_A 140 LKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAK 219 (297)
T ss_dssp HHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHH
T ss_pred HHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 899999999998652 25799999999999999999999999999999974
Q ss_pred ---CCcHHHHHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhCCC
Q 006411 571 ---GYSGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRASVSLNELGIYEEWNKQFGSL 644 (646)
Q Consensus 571 ---GySGADL~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrPSvs~~dl~~ye~w~k~fg~~ 644 (646)
||+|+||..+|++|++.++++.... ...........+|+.+||..|+.+++||++.+++..|++|.++||++
T Consensus 220 ~~~g~~~~~l~~l~~~a~~~a~r~~~~~--~~~~~~~~~~~~i~~~d~~~a~~~~~~s~~~~~~~~~~~~~~~~~~~ 294 (297)
T 3b9p_A 220 ITDGYSGSDLTALAKDAALEPIRELNVE--QVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKWSQDYGDI 294 (297)
T ss_dssp HTTTCCHHHHHHHHHHHTTHHHHTCC----------CCCCCCCCHHHHHHHTTSCCCSSCHHHHHHHHHHC------
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHhhh--hcccccccccCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCe
Confidence 9999999999999999999863111 01111222346799999999999999999999999999999999975
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-32 Score=277.19 Aligned_cols=202 Identities=37% Similarity=0.638 Sum_probs=155.7
Q ss_pred CCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC-----------------------------
Q 006411 404 RDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP----------------------------- 453 (646)
Q Consensus 404 ~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP----------------------------- 453 (646)
..|+++|+||+|++++|++|++.|.+|+.+++.|..++ .+++|+||||||
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~ 82 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN 82 (274)
T ss_dssp ---------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCS
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHh
Confidence 46899999999999999999999999999999999876 778999999999
Q ss_pred --CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcC
Q 006411 454 --IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEG 531 (646)
Q Consensus 454 --vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDG 531 (646)
.++.++.++.+|+.|+...|||+||||||.++. .+.. .......+++++++.+|+|
T Consensus 83 ~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~---------------------~r~~-~~~~~~~~~~~~~l~~Lsg 140 (274)
T 2x8a_A 83 MYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCP---------------------RRSD-RETGASVRVVNQLLTEMDG 140 (274)
T ss_dssp STTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC-------------------------------CTTHHHHHHHHHHT
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhc---------------------ccCC-CcchHHHHHHHHHHHhhhc
Confidence 456788999999999999999999999999876 2211 1112234688999999999
Q ss_pred CCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC-----------------------------------CCcH
Q 006411 532 FDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS-----------------------------------GYSG 574 (646)
Q Consensus 532 l~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~-----------------------------------GySG 574 (646)
... ...++++++||+|+.||+|++| |||+.|+|++|+. ||||
T Consensus 141 g~~-~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sg 219 (274)
T 2x8a_A 141 LEA-RQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTG 219 (274)
T ss_dssp CCS-TTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCH
T ss_pred ccc-cCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCH
Confidence 976 5689999999999999999999 9999999999974 8999
Q ss_pred HHHHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCCCCCHHHH
Q 006411 575 SDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRASVSLNEL 631 (646)
Q Consensus 575 ADL~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrPSvs~~dl 631 (646)
+||..+|++|++.|+++.+..... ........|+++||+.|+++++||++.+++
T Consensus 220 adl~~l~~~a~~~a~~~~~~~~~~---~~~~~~~~i~~~df~~al~~~~ps~~~~~~ 273 (274)
T 2x8a_A 220 ADLSALVREASICALRQEMARQKS---GNEKGELKVSHKHFEEAFKKVRSSISKKDQ 273 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHC--------------CCBCHHHHHHHHTTCCCCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHhhccc---cccccCCeecHHHHHHHHHHhcCCCChhhc
Confidence 999999999999999875432111 011223579999999999999999998875
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.4e-31 Score=276.63 Aligned_cols=237 Identities=51% Similarity=0.937 Sum_probs=189.2
Q ss_pred hhhhhhhHHHHhhhhcccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCC------------
Q 006411 386 LRNLEPRLIEHVSNEIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP------------ 453 (646)
Q Consensus 386 lk~~ep~~~~~v~~~i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPP------------ 453 (646)
+..+++.+.+.+..+++...++++|+||+|.+.+++.|.+++.+|+.++++|.+.+.++++|||||||
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia 169 (389)
T 3vfd_A 90 FRNVDSNLANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVA 169 (389)
T ss_dssp -------CCTTGGGTTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHH
T ss_pred cccccHHHHHHHHhhhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHH
Confidence 34455555666777888999999999999999999999999999999999999888888999999999
Q ss_pred -------------------CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCC
Q 006411 454 -------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGE 514 (646)
Q Consensus 454 -------------------vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~ 514 (646)
.|+.+..++.+|..|+..+|+||||||||.|+. .+ ..+.
T Consensus 170 ~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~---------------------~~-~~~~ 227 (389)
T 3vfd_A 170 AESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLC---------------------ER-REGE 227 (389)
T ss_dssp HHTTCEEEEECSCCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC-----------------------------
T ss_pred HhhcCcEEEeeHHHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcc---------------------cC-CCcc
Confidence 567788899999999999999999999999987 33 2334
Q ss_pred chhhHHHHHHHHHHHcCCCC-CCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC-----------------------
Q 006411 515 HESSRRLKTQFLIEMEGFDS-GSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS----------------------- 570 (646)
Q Consensus 515 ~e~s~rilneLL~eLDGl~~-~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~----------------------- 570 (646)
+....+++++||..|+++.. ...+|+||+|||+++.||++++|||+..|+|++|+.
T Consensus 228 ~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~ 307 (389)
T 3vfd_A 228 HDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKEL 307 (389)
T ss_dssp -CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHH
T ss_pred chHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 45678899999999999875 246799999999999999999999999999999974
Q ss_pred --------CCcHHHHHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHhC
Q 006411 571 --------GYSGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRASVSLNELGIYEEWNKQFG 642 (646)
Q Consensus 571 --------GySGADL~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrPSvs~~dl~~ye~w~k~fg 642 (646)
||+++||..||+.|++.++++.... ............|+.+||..|+..++|+++.++++.|++|.++||
T Consensus 308 ~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~--~~~~~~~~~~~~i~~~d~~~al~~~~~s~~~~~l~~~~~~~~~~g 385 (389)
T 3vfd_A 308 AQLARMTDGYSGSDLTALAKDAALGPIRELKPE--QVKNMSASEMRNIRLSDFTESLKKIKRSVSPQTLEAYIRWNKDFG 385 (389)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC-----CCSSSCCCCCCHHHHHHHHHHCCCSSCHHHHHHHHHHHHHCC
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhh--hhhccchhhcCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999873211 111122234467999999999999999999999999999999999
Q ss_pred CCCC
Q 006411 643 SLSL 646 (646)
Q Consensus 643 ~~~~ 646 (646)
+.++
T Consensus 386 ~~~~ 389 (389)
T 3vfd_A 386 DTTV 389 (389)
T ss_dssp ----
T ss_pred CccC
Confidence 8764
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.7e-26 Score=226.35 Aligned_cols=207 Identities=37% Similarity=0.675 Sum_probs=164.1
Q ss_pred ccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC---------------------------
Q 006411 402 MDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP--------------------------- 453 (646)
Q Consensus 402 ~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP--------------------------- 453 (646)
....|+++|+||+|++.+++.|.+.+..|+.++++|...+ .+++++||||||
T Consensus 8 ~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~ 87 (285)
T 3h4m_A 8 VDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSEL 87 (285)
T ss_dssp EESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGG
T ss_pred ccCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHH
Confidence 3567899999999999999999999999999999999876 678999999999
Q ss_pred ----CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCC--CCchhhHHHHHHHHH
Q 006411 454 ----IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSD--GEHESSRRLKTQFLI 527 (646)
Q Consensus 454 ----vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~--~~~e~s~rilneLL~ 527 (646)
.|+.+..++.+|..++...|+||||||||.++. ++... +........+..++.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~---------------------~~~~~~~~~~~~~~~~l~~ll~ 146 (285)
T 3h4m_A 88 VKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAA---------------------KRTDALTGGDREVQRTLMQLLA 146 (285)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHB---------------------CCSSSCCGGGGHHHHHHHHHHH
T ss_pred HHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcc---------------------cCccccCCccHHHHHHHHHHHH
Confidence 667788999999999999999999999999987 33221 123345678889999
Q ss_pred HHcCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC------------------------------CCcHH
Q 006411 528 EMEGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS------------------------------GYSGS 575 (646)
Q Consensus 528 eLDGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~------------------------------GySGA 575 (646)
.++++.. ..+++||+|||.|+.||++++| ||++.++++.|+. ||+++
T Consensus 147 ~~~~~~~-~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~ 225 (285)
T 3h4m_A 147 EMDGFDA-RGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGA 225 (285)
T ss_dssp HHHTTCS-SSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHH
T ss_pred HhhCCCC-CCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHH
Confidence 9999876 5689999999999999999999 9999999999974 99999
Q ss_pred HHHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCC--CCCHHHHHHHHHHHHHhCCC
Q 006411 576 DMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRA--SVSLNELGIYEEWNKQFGSL 644 (646)
Q Consensus 576 DL~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrP--Svs~~dl~~ye~w~k~fg~~ 644 (646)
||..+|+.|.+.|+++ ....|+.+||..|+.++.+ +.+...-..|..|...||+.
T Consensus 226 ~i~~l~~~a~~~a~~~--------------~~~~I~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (285)
T 3h4m_A 226 ELKAICTEAGMNAIRE--------------LRDYVTMDDFRKAVEKIMEKKKVKVKEPAHLDVLYRLEHHH 282 (285)
T ss_dssp HHHHHHHHHHHHHHHT--------------TCSSBCHHHHHHHHHHHHHHHCCC-----------------
T ss_pred HHHHHHHHHHHHHHHh--------------ccCcCCHHHHHHHHHHHHhccccccCCchHHHHHHHHhccC
Confidence 9999999999998865 1246999999999998854 23334457899999999863
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-26 Score=254.46 Aligned_cols=208 Identities=33% Similarity=0.570 Sum_probs=165.7
Q ss_pred CCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC-------------------------------
Q 006411 406 PHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP------------------------------- 453 (646)
Q Consensus 406 p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP------------------------------- 453 (646)
+.++|++|+|++.+++.|++.+.+|+.+|++|..++ .++++|||||||
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 568999999999999999999999999999999886 778999999999
Q ss_pred CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCC
Q 006411 454 IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFD 533 (646)
Q Consensus 454 vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~ 533 (646)
.|+.+..++.+|..|...+|+||||||||.|+. ++. ....+...+++++||..|+++.
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~---------------------~~~-~~~~~~~~~~~~~LL~~ld~~~ 336 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAP---------------------KRE-KTHGEVERRIVSQLLTLMDGLK 336 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCB---------------------CTT-SCCCHHHHHHHHHHHHHHHHSC
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhcc---------------------ccc-cccchHHHHHHHHHHHHhhccc
Confidence 678888999999999999999999999999987 332 2334566889999999999987
Q ss_pred CCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC------------------------------CCcHHHHHHHH
Q 006411 534 SGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS------------------------------GYSGSDMKNLV 581 (646)
Q Consensus 534 ~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~------------------------------GySGADL~~Lc 581 (646)
. ..+|+||+|||+|+.||++++| ||++.|+|++|+. ||+|+||..||
T Consensus 337 ~-~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~ 415 (489)
T 3hu3_A 337 Q-RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALC 415 (489)
T ss_dssp T-TSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHH
T ss_pred c-CCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHH
Confidence 6 5689999999999999999999 9999999999974 99999999999
Q ss_pred HHHhhhHHHHHHHhchhh-h--hhcccCCCCccHHHHHHHHhhcC-----------CCCCHHHHHHHHH
Q 006411 582 KEASMGPLREALRQGIEI-T--RLQKEDMQPVTLQDFENALPQVR-----------ASVSLNELGIYEE 636 (646)
Q Consensus 582 ~eAa~~Airr~l~~~~~~-~--~~~~~~~~~Vt~eDFe~AL~kvr-----------PSvs~~dl~~ye~ 636 (646)
++|++.++++........ . .........|+++||+.|+++++ |+|+|+|+++|--
T Consensus 416 ~~A~~~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~~~~ps~~re~~~e~p~v~W~dig~~~~ 484 (489)
T 3hu3_A 416 SEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGRSH 484 (489)
T ss_dssp HHHHHHHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHTSHHHHHHHGGGC---------------
T ss_pred HHHHHHHHHhccccccccccccchhhcccCcCCHHHHHHHHHhCCchhhhcccccCCCCCHHHcCCCcc
Confidence 999999998753221000 0 00011224699999999999987 5688999988753
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=99.92 E-value=4.9e-25 Score=241.95 Aligned_cols=183 Identities=39% Similarity=0.680 Sum_probs=156.9
Q ss_pred CCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC------------------------------
Q 006411 405 DPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP------------------------------ 453 (646)
Q Consensus 405 ~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP------------------------------ 453 (646)
.+.++|+||+|+++++++|++.+.. +..|+.|..++ .+|+||||+|||
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~ 88 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL 88 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH
Confidence 6789999999999999999999876 77888888776 778999999999
Q ss_pred -CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCC--CCCchhhHHHHHHHHHHHc
Q 006411 454 -IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKS--DGEHESSRRLKTQFLIEME 530 (646)
Q Consensus 454 -vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s--~~~~e~s~rilneLL~eLD 530 (646)
+|.++..++.+|..|+..+||||||||||.|.. ++.. .+.+....+++++||.+||
T Consensus 89 ~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~---------------------~r~~~~~g~~~~~~~~l~~LL~~ld 147 (476)
T 2ce7_A 89 FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGR---------------------HRGAGLGGGHDEREQTLNQLLVEMD 147 (476)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCC---------------------C---------CHHHHHHHHHHHHHH
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhh---------------------hcccccCcCcHHHHHHHHHHHHHHh
Confidence 567788999999999999999999999999987 3321 2333445678999999999
Q ss_pred CCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC------------------------------CCcHHHHH
Q 006411 531 GFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS------------------------------GYSGSDMK 578 (646)
Q Consensus 531 Gl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~------------------------------GySGADL~ 578 (646)
++.. ..+|+||+|||+|+.||++++| |||+.|+|++|+. ||+|+||.
T Consensus 148 ~~~~-~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~ 226 (476)
T 2ce7_A 148 GFDS-KEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLE 226 (476)
T ss_dssp HSCG-GGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHH
T ss_pred ccCC-CCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHH
Confidence 9876 5689999999999999999999 9999999999983 99999999
Q ss_pred HHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCC
Q 006411 579 NLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRA 624 (646)
Q Consensus 579 ~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrP 624 (646)
++|++|++.|.++ ....|+.+||..|+.++.+
T Consensus 227 ~lv~~Aal~A~~~--------------~~~~I~~~dl~~al~~v~~ 258 (476)
T 2ce7_A 227 NLVNEAALLAARE--------------GRDKITMKDFEEAIDRVIA 258 (476)
T ss_dssp HHHHHHHHHHHHT--------------TCSSBCHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHc--------------CCCeecHHHHHHHHHHHhc
Confidence 9999999888754 2356999999999999865
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.92 E-value=4.3e-24 Score=211.77 Aligned_cols=185 Identities=37% Similarity=0.647 Sum_probs=155.1
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC----------------------------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP---------------------------- 453 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP---------------------------- 453 (646)
+..++++|+||+|++.+++.|.+.+.+ +.+++.|...+ .+++|+||||||
T Consensus 4 ~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~ 82 (257)
T 1lv7_A 4 EDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFV 82 (257)
T ss_dssp ECSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSST
T ss_pred ccCCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHH
Confidence 457889999999999999999998876 88888888765 678999999999
Q ss_pred ---CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCC--CCCchhhHHHHHHHHHH
Q 006411 454 ---IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKS--DGEHESSRRLKTQFLIE 528 (646)
Q Consensus 454 ---vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s--~~~~e~s~rilneLL~e 528 (646)
.|++++.++.+|+.|+...|+|+||||||.+.. .+.. .+......++++++|..
T Consensus 83 ~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~---------------------~~~~~~~~~~~~~~~~~~~ll~~ 141 (257)
T 1lv7_A 83 EMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGR---------------------QRGAGLGGGHDEREQTLNQMLVE 141 (257)
T ss_dssp TSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTC---------------------CCSTTSCCTTCHHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhcc---------------------CCCCCcCCCchHHHHHHHHHHHH
Confidence 456678899999999999999999999999987 2221 12233445789999999
Q ss_pred HcCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC------------------------------CCcHHH
Q 006411 529 MEGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS------------------------------GYSGSD 576 (646)
Q Consensus 529 LDGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~------------------------------GySGAD 576 (646)
|+++.. ..+++||+|||+|+.||++++| ||++.+++++|+. ||+++|
T Consensus 142 l~~~~~-~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~d 220 (257)
T 1lv7_A 142 MDGFEG-NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGAD 220 (257)
T ss_dssp HHTCCS-SSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHH
T ss_pred hhCccc-CCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHH
Confidence 999876 5689999999999999999999 9999999999974 999999
Q ss_pred HHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCC
Q 006411 577 MKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRA 624 (646)
Q Consensus 577 L~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrP 624 (646)
|..+|++|++.|+++ ....|+.+||+.|+..+..
T Consensus 221 l~~l~~~a~~~a~~~--------------~~~~i~~~~~~~a~~~~~~ 254 (257)
T 1lv7_A 221 LANLVNEAALFAARG--------------NKRVVSMVEFEKAKDKIMM 254 (257)
T ss_dssp HHHHHHHHHHHHHHT--------------TCSSBCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHh--------------CCCcccHHHHHHHHHHHhc
Confidence 999999999888754 2357999999999998764
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-24 Score=213.87 Aligned_cols=183 Identities=36% Similarity=0.601 Sum_probs=139.5
Q ss_pred CCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC-------------------------------
Q 006411 406 PHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP------------------------------- 453 (646)
Q Consensus 406 p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP------------------------------- 453 (646)
|+++|+||+|++.+|+.|++.+.+ +..++.|...+ .++++|||||||
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 79 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI 79 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc
Confidence 679999999999999999999877 88888888766 678999999999
Q ss_pred CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCC---CchhhHHHHHHHHHHHc
Q 006411 454 IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDG---EHESSRRLKTQFLIEME 530 (646)
Q Consensus 454 vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~---~~e~s~rilneLL~eLD 530 (646)
.+.++..++.+|..|....|+||||||||.++. ++.... ........+++||..|+
T Consensus 80 ~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~---------------------~~~~~~~~~~~~~~~~~l~~ll~~~~ 138 (262)
T 2qz4_A 80 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGK---------------------KRSTTMSGFSNTEEEQTLNQLLVEMD 138 (262)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEECC----------------------------------------CHHHHHHHHHHH
T ss_pred cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhc---------------------cccccccCccchhHHHHHHHHHHHhh
Confidence 456778889999999999999999999999987 222111 12233567899999999
Q ss_pred CCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC--------------------------------CCcHHH
Q 006411 531 GFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS--------------------------------GYSGSD 576 (646)
Q Consensus 531 Gl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~--------------------------------GySGAD 576 (646)
++.. ..+++||+|||.++.||++++| ||++.++|++|+. ||+|+|
T Consensus 139 ~~~~-~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~ 217 (262)
T 2qz4_A 139 GMGT-TDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGAD 217 (262)
T ss_dssp TCCT-TCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHH
T ss_pred CcCC-CCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHH
Confidence 9876 5689999999999999999999 9999999999974 999999
Q ss_pred HHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCCC
Q 006411 577 MKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRAS 625 (646)
Q Consensus 577 L~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrPS 625 (646)
|..+|++|++.|+++. ...|+.+||..|++++.|+
T Consensus 218 l~~l~~~a~~~a~~~~--------------~~~i~~~d~~~a~~~~~~~ 252 (262)
T 2qz4_A 218 IANICNEAALHAAREG--------------HTSVHTLNFEYAVERVLAG 252 (262)
T ss_dssp HHHHHHHHHTC----------------------CCBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC--------------CCCCCHHHHHHHHHHhccC
Confidence 9999999999988652 2468899999999988764
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.5e-23 Score=229.57 Aligned_cols=185 Identities=37% Similarity=0.646 Sum_probs=157.8
Q ss_pred CCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC-----------------------------
Q 006411 404 RDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP----------------------------- 453 (646)
Q Consensus 404 ~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP----------------------------- 453 (646)
..++++|+||+|+++++++|++.+.. +..+..|..++ .+++||||||||
T Consensus 24 ~~~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~ 102 (499)
T 2dhr_A 24 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 102 (499)
T ss_dssp SCCCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTS
T ss_pred cCCCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHH
Confidence 34899999999999999999999876 77888888775 778999999999
Q ss_pred --CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCC--CCCchhhHHHHHHHHHHH
Q 006411 454 --IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKS--DGEHESSRRLKTQFLIEM 529 (646)
Q Consensus 454 --vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s--~~~~e~s~rilneLL~eL 529 (646)
.|...+.++.+|+.|+...|||+||||||.+.. .+.. ...+....+++++||.+|
T Consensus 103 ~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~---------------------~r~~~~~~~~~e~~~~l~~LL~~L 161 (499)
T 2dhr_A 103 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGR---------------------KRGSGVGGGNDEREQTLNQLLVEM 161 (499)
T ss_dssp SCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCC---------------------CSSSSTTTSSHHHHHHHHHHHHHG
T ss_pred hhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHH---------------------hhccCcCCCcHHHHHHHHHHHHHh
Confidence 456778899999999888999999999999976 3321 122344567899999999
Q ss_pred cCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC------------------------------CCcHHHH
Q 006411 530 EGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS------------------------------GYSGSDM 577 (646)
Q Consensus 530 DGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~------------------------------GySGADL 577 (646)
+|... ...++||+|||+|+.||++++| |||+.|+|++|+. ||+|+||
T Consensus 162 dg~~~-~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL 240 (499)
T 2dhr_A 162 DGFEK-DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADL 240 (499)
T ss_dssp GGCCS-SCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHH
T ss_pred ccccc-CccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHH
Confidence 99876 5679999999999999999999 9999999999974 9999999
Q ss_pred HHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCCC
Q 006411 578 KNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRAS 625 (646)
Q Consensus 578 ~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrPS 625 (646)
+++|++|++.|.++ ....|+++||+.|+.++.+.
T Consensus 241 ~~lv~~Aa~~A~~~--------------~~~~It~~dl~~al~~v~~~ 274 (499)
T 2dhr_A 241 ENLLNEAALLAARE--------------GRRKITMKDLEEAADRVMML 274 (499)
T ss_dssp HHHHHHHHHHHTTT--------------CCSSCCSHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHh--------------CCCccCHHHHHHHHHHHhcc
Confidence 99999999877643 22569999999999998764
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-22 Score=201.30 Aligned_cols=184 Identities=37% Similarity=0.662 Sum_probs=149.7
Q ss_pred hcccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC-------------------------
Q 006411 400 EIMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP------------------------- 453 (646)
Q Consensus 400 ~i~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP------------------------- 453 (646)
.+....|.++|+||+|+++++.+|++.+.. +..+..+.... ..++|+||||||
T Consensus 5 ~~~~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~ 83 (254)
T 1ixz_A 5 SVLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGS 83 (254)
T ss_dssp ---CCCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHH
T ss_pred ccccCCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHH
Confidence 456788999999999999999999998776 56677777664 677899999999
Q ss_pred ------CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCC--CCCchhhHHHHHHH
Q 006411 454 ------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKS--DGEHESSRRLKTQF 525 (646)
Q Consensus 454 ------vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s--~~~~e~s~rilneL 525 (646)
.+...+.++.+|+.+....|+++||||||.++. .+.. ........++++++
T Consensus 84 ~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~---------------------~~~~~~~~~~~~~~~~~~~l 142 (254)
T 1ixz_A 84 DFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGR---------------------KRGSGVGGGNDEREQTLNQL 142 (254)
T ss_dssp HHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC------------------------------CHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhc---------------------ccCccccccchHHHHHHHHH
Confidence 345567788999999888899999999999986 2211 11233456788999
Q ss_pred HHHHcCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC------------------------------CCc
Q 006411 526 LIEMEGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS------------------------------GYS 573 (646)
Q Consensus 526 L~eLDGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~------------------------------GyS 573 (646)
+.+|+|... ...++++++||+|+.||++++| ||++.|+|++|+. ||+
T Consensus 143 l~~l~g~~~-~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~ 221 (254)
T 1ixz_A 143 LVEMDGFEK-DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFV 221 (254)
T ss_dssp HHHHHTCCT-TCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCC
T ss_pred HHHHhCCCC-CCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCC
Confidence 999999876 5579999999999999999999 9999999999974 999
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHh
Q 006411 574 GSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALP 620 (646)
Q Consensus 574 GADL~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~ 620 (646)
|+||+.+|++|++.|+++ ....|+++||++|+.
T Consensus 222 ~~dl~~~~~~a~~~a~~~--------------~~~~I~~~dl~~a~~ 254 (254)
T 1ixz_A 222 GADLENLLNEAALLAARE--------------GRRKITMKDLEEAAS 254 (254)
T ss_dssp HHHHHHHHHHHHHHHHHT--------------TCSSBCHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHh--------------cCCCcCHHHHHHHhC
Confidence 999999999999888754 124699999999873
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.9e-24 Score=213.46 Aligned_cols=192 Identities=33% Similarity=0.555 Sum_probs=151.8
Q ss_pred ccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCCCch------------------------
Q 006411 402 MDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPPIGE------------------------ 456 (646)
Q Consensus 402 ~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPPvGe------------------------ 456 (646)
..+.|+++|+||+|.+.+++.|++.+.+ +.+++.|...+ .+++|+||||||+.+
T Consensus 2 ~~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~ 80 (268)
T 2r62_A 2 NAEKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSF 80 (268)
T ss_dssp CCCCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTT
T ss_pred CccCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHH
Confidence 3467899999999999999999998876 88898888765 678999999999333
Q ss_pred -------HHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCC---CCchhhHHHHHHHH
Q 006411 457 -------GEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSD---GEHESSRRLKTQFL 526 (646)
Q Consensus 457 -------sek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~---~~~e~s~rilneLL 526 (646)
++..++.+|+.|....|+||||||||.+.. .+... .......+++++||
T Consensus 81 ~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~---------------------~~~~~~~~~~~~~~~~~~~~ll 139 (268)
T 2r62_A 81 IEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGK---------------------SRAAGGVVSGNDEREQTLNQLL 139 (268)
T ss_dssp TTSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC-------------------------------CCCSCSSTTTTT
T ss_pred HHhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcc---------------------cccccccCCCchhHHHHHHHHH
Confidence 233445667778888899999999999986 22111 11112234678899
Q ss_pred HHHcCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC------------------------------CCcH
Q 006411 527 IEMEGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS------------------------------GYSG 574 (646)
Q Consensus 527 ~eLDGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~------------------------------GySG 574 (646)
..|+++.....+|+||+|||+++.||++++| ||+..|+|++|+. ||+|
T Consensus 140 ~~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g 219 (268)
T 2r62_A 140 AEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAG 219 (268)
T ss_dssp TTTTCSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCH
T ss_pred HHhhCcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCH
Confidence 9999987645679999999999999999999 9999999999975 8999
Q ss_pred HHHHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCCCCCHH
Q 006411 575 SDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRASVSLN 629 (646)
Q Consensus 575 ADL~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrPSvs~~ 629 (646)
+||..+|+.|++.|+.+ ....|+.+||..|+.++.|+....
T Consensus 220 ~dl~~l~~~a~~~a~~~--------------~~~~i~~~~~~~a~~~~~~~~~~~ 260 (268)
T 2r62_A 220 ADLANIINEAALLAGRN--------------NQKEVRQQHLKEAVERGIAGLEKK 260 (268)
T ss_dssp HHHHHHHHHHHHTTSSS--------------CCCSCCHHHHHTSCTTCCCCCC--
T ss_pred HHHHHHHHHHHHHHHHh--------------ccCCcCHHHHHHHHHHHhhcchhh
Confidence 99999999998776532 235799999999999999987543
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.86 E-value=4.5e-21 Score=193.12 Aligned_cols=182 Identities=37% Similarity=0.663 Sum_probs=148.0
Q ss_pred ccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC---------------------------
Q 006411 402 MDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP--------------------------- 453 (646)
Q Consensus 402 ~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP--------------------------- 453 (646)
+...|+++|+||+|+++++++|++.+.. +..+..+.... ..++|+||+|||
T Consensus 31 ~~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~ 109 (278)
T 1iy2_A 31 LTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF 109 (278)
T ss_dssp BCCCCCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred ccCCCCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHH
Confidence 4456899999999999999999998766 56667776654 667899999999
Q ss_pred ----CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCC--CCCchhhHHHHHHHHH
Q 006411 454 ----IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKS--DGEHESSRRLKTQFLI 527 (646)
Q Consensus 454 ----vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s--~~~~e~s~rilneLL~ 527 (646)
.+...+.++.+|+.+....|+++||||||.+.. .+.. .........++++++.
T Consensus 110 ~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~---------------------~~~~~~~~~~~~~~~~~~~ll~ 168 (278)
T 1iy2_A 110 VEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGR---------------------KRGSGVGGGNDEREQTLNQLLV 168 (278)
T ss_dssp HHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHC---------------------C--------CHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhc---------------------ccccccCCcchHHHHHHHHHHH
Confidence 344556788899999888999999999999976 2211 1122344678899999
Q ss_pred HHcCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC------------------------------CCcHH
Q 006411 528 EMEGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS------------------------------GYSGS 575 (646)
Q Consensus 528 eLDGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~------------------------------GySGA 575 (646)
+|+|... ...++++++||+|+.||++++| ||++.|+|++|+. ||+|+
T Consensus 169 ~lsgg~~-~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~ 247 (278)
T 1iy2_A 169 EMDGFEK-DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGA 247 (278)
T ss_dssp HHTTCCT-TCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHH
T ss_pred HHhCCCC-CCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHH
Confidence 9999875 4579999999999999999999 9999999999974 99999
Q ss_pred HHHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHh
Q 006411 576 DMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALP 620 (646)
Q Consensus 576 DL~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~ 620 (646)
||+.+|++|++.|+++ ....|+.+||++|++
T Consensus 248 dl~~l~~~a~~~a~~~--------------~~~~I~~~dl~~a~~ 278 (278)
T 1iy2_A 248 DLENLLNEAALLAARE--------------GRRKITMKDLEEAAS 278 (278)
T ss_dssp HHHHHHHHHHHHHHHT--------------TCCSBCHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHh--------------CCCCcCHHHHHHHhC
Confidence 9999999999887653 124699999999874
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=99.64 E-value=9.5e-17 Score=164.30 Aligned_cols=104 Identities=15% Similarity=0.205 Sum_probs=75.4
Q ss_pred CCCccccccCCC-------------------------------CchHHHHHHHHHHHh----hhcCCeeeeehhhhHHhh
Q 006411 442 SPGKGLLLFGPP-------------------------------IGEGEKLVRALFGVA----SCRQPAVIFVDEIDSLLS 486 (646)
Q Consensus 442 ~PprGVLLyGPP-------------------------------vGesek~Vr~lF~~A----r~~aPsIIFIDEIDsL~~ 486 (646)
.+|+|+|||||| +|+.+..++.+|..| +..+||||||||||.+++
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~ 113 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAG 113 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC----
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhcC
Confidence 668999999999 677889999999999 677999999999999987
Q ss_pred hcccccccchhhhhhhhhhccccCCCC-CchhhHHHHHHHHHHHcCCC--------C--CCCcEEEEEecCCCCcCCHHH
Q 006411 487 QMLPYMHVHHIKLFCLKRFYFQRKSDG-EHESSRRLKTQFLIEMEGFD--------S--GSEQILLVGATNRPQELDEAA 555 (646)
Q Consensus 487 k~~~~~~~~~~~~~~~kr~~~~R~s~~-~~e~s~rilneLL~eLDGl~--------~--~~~~VlVIaATNrPd~LDpAL 555 (646)
.+.+.. .....+.+.+.|+..||+.. . ...+|+||+|||+++.||+|+
T Consensus 114 ---------------------~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al 172 (293)
T 3t15_A 114 ---------------------RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPL 172 (293)
T ss_dssp -------------------------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHH
T ss_pred ---------------------CCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHH
Confidence 222211 12245678899999998654 1 245799999999999999999
Q ss_pred Hh--ccccEEEeC
Q 006411 556 RR--RLTKRLYIP 566 (646)
Q Consensus 556 lR--RFDr~I~Ip 566 (646)
+| |||+.|++|
T Consensus 173 ~R~~R~d~~i~~P 185 (293)
T 3t15_A 173 IRDGRMEKFYWAP 185 (293)
T ss_dssp HHHHHEEEEEECC
T ss_pred hCCCCCceeEeCc
Confidence 99 999999854
|
| >2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=3.4e-17 Score=177.23 Aligned_cols=147 Identities=18% Similarity=0.338 Sum_probs=101.9
Q ss_pred CCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCC-------------------------------
Q 006411 405 DPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP------------------------------- 453 (646)
Q Consensus 405 ~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPP------------------------------- 453 (646)
.|...|++|+|.+++++.+.+.+.. + .....|++|+||||||
T Consensus 31 ~~~~~~~~iiG~~~~~~~l~~~~~~-~------~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~ 103 (456)
T 2c9o_A 31 LAKQAASGLVGQENAREACGVIVEL-I------KSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS 103 (456)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHH-H------HTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCC
T ss_pred ChhhchhhccCHHHHHHHHHHHHHH-H------HhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHH
Confidence 4677899999999999999988754 2 1223567999999999
Q ss_pred --CchHHHHHHHHHHHh---hhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCC---------------
Q 006411 454 --IGEGEKLVRALFGVA---SCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDG--------------- 513 (646)
Q Consensus 454 --vGesek~Vr~lF~~A---r~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~--------------- 513 (646)
.|++++ ++.+|..| +..+||||||||||+|+.+ |....
T Consensus 104 ~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~---------------------r~~~~~~~~~~~~~~~~~~l 161 (456)
T 2c9o_A 104 TEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPC---------------------ETENPMGGYGKTISHVIIGL 161 (456)
T ss_dssp SSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC-----------------------------------CEEEEE
T ss_pred HhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccc---------------------cCCCCCCCcchHHHHHHHHH
Confidence 456666 88899999 8889999999999999972 22211
Q ss_pred ---CchhhHHHHHHHHHHHc--CCCCCCCcEEEEEecCCCCcCCHHHHh--cccc--EEEeCCCCC--------------
Q 006411 514 ---EHESSRRLKTQFLIEME--GFDSGSEQILLVGATNRPQELDEAARR--RLTK--RLYIPLPSS-------------- 570 (646)
Q Consensus 514 ---~~e~s~rilneLL~eLD--Gl~~~~~~VlVIaATNrPd~LDpALlR--RFDr--~I~IplPd~-------------- 570 (646)
+.+...++.++++..|+ ++.. .+.|+|++|||+|+.+|+|++| |||+ .+++|+|+.
T Consensus 162 ~~~~~~~~~~~~~~ll~~l~~~~~~~-~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~ 240 (456)
T 2c9o_A 162 KTAKGTKQLKLDPSIFESLQKERVEA-GDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL 240 (456)
T ss_dssp EETTEEEEEEECHHHHHHHHHTTCCT-TEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH
T ss_pred hccccchhHhhhHHHHHHHhhccCCC-CCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH
Confidence 01112234556777776 4433 4567777999999999999998 9999 788999964
Q ss_pred -----------CCcHHHHHHHHHH
Q 006411 571 -----------GYSGSDMKNLVKE 583 (646)
Q Consensus 571 -----------GySGADL~~Lc~e 583 (646)
| |+||.++|..
T Consensus 241 ~dl~~~a~~t~g--gadl~~l~~~ 262 (456)
T 2c9o_A 241 HDLDVANARPQG--GQDILSMMGQ 262 (456)
T ss_dssp HHHHHTC-----------------
T ss_pred HHHHHHHHhCCC--hhHHHHHHhh
Confidence 8 9999999954
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.4e-13 Score=138.68 Aligned_cols=175 Identities=15% Similarity=0.217 Sum_probs=117.8
Q ss_pred ccccChHHHHHHHHHHHHhhccCccccccC----CCCCccccccCCCCch------------------------------
Q 006411 411 DDIAGLEHAKKCVMEMVIWPLLRPDIFKGC----RSPGKGLLLFGPPIGE------------------------------ 456 (646)
Q Consensus 411 dDIgGle~~K~~L~E~V~lPL~~pelf~~~----~~PprGVLLyGPPvGe------------------------------ 456 (646)
.+|+|++.+++.|.+.+.++.. +..+... ..++.++||||||+.+
T Consensus 31 ~~i~G~~~~~~~l~~~~~~~~~-~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 109 (309)
T 3syl_A 31 RELIGLKPVKDRIRETAALLLV-ERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDD 109 (309)
T ss_dssp HHSSSCHHHHHHHHHHHHHHHH-HHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGG
T ss_pred HHccChHHHHHHHHHHHHHHHh-HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHH
Confidence 4899999999999999988653 4444322 2445679999999333
Q ss_pred --------HHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHH
Q 006411 457 --------GEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIE 528 (646)
Q Consensus 457 --------sek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~e 528 (646)
....++.+|..+ .++||||||||.|+. .+.. ......+++.|+..
T Consensus 110 l~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~---------------------~~~~---~~~~~~~~~~Ll~~ 162 (309)
T 3syl_A 110 LVGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYR---------------------PDNE---RDYGQEAIEILLQV 162 (309)
T ss_dssp TCCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCC---------------------CC------CCTHHHHHHHHHH
T ss_pred hhhhcccccHHHHHHHHHhc---CCCEEEEEChhhhcc---------------------CCCc---ccccHHHHHHHHHH
Confidence 334444555544 478999999999976 2211 22345688899999
Q ss_pred HcCCCCCCCcEEEEEecCCCC-----cCCHHHHhccccEEEeCCCCC---------------------------C-----
Q 006411 529 MEGFDSGSEQILLVGATNRPQ-----ELDEAARRRLTKRLYIPLPSS---------------------------G----- 571 (646)
Q Consensus 529 LDGl~~~~~~VlVIaATNrPd-----~LDpALlRRFDr~I~IplPd~---------------------------G----- 571 (646)
|+... .+++||+|||.++ .+||+|++||+.+|+|+.|+. .
T Consensus 163 l~~~~---~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~ 239 (309)
T 3syl_A 163 MENNR---DDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLR 239 (309)
T ss_dssp HHHCT---TTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHH
T ss_pred HhcCC---CCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 98743 4789999998764 368999999999999999985 1
Q ss_pred ------CcHHHHHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHH
Q 006411 572 ------YSGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENA 618 (646)
Q Consensus 572 ------ySGADL~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~A 618 (646)
-++.+|.++|+.|.+.+..+.+... .......+...|+.+||..+
T Consensus 240 ~~~~~~gn~r~l~~~l~~a~~~~~~r~~~~~--~~~~~~~~l~~i~~~d~~~~ 290 (309)
T 3syl_A 240 RNQPHFANARSIRNALDRARLRQANRLFTAS--SGPLDARALSTIAEEDIRAS 290 (309)
T ss_dssp TTSSSCCHHHHHHHHHHHHHHHHHHHHHHC-----CEEHHHHHEECHHHHHTS
T ss_pred ccCCCCCcHHHHHHHHHHHHHHHHHHHHhcc--CCCCCHHHHhhccHHHhccc
Confidence 2367777777777776666654321 01111222345666676653
|
| >1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E* | Back alignment and structure |
|---|
Probab=99.38 E-value=8.1e-14 Score=152.06 Aligned_cols=129 Identities=19% Similarity=0.205 Sum_probs=57.3
Q ss_pred ccccChHHHHHHHHHHHHhhccCccccccCC--CCCccccccCCC--------------------------------Cc-
Q 006411 411 DDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR--SPGKGLLLFGPP--------------------------------IG- 455 (646)
Q Consensus 411 dDIgGle~~K~~L~E~V~lPL~~pelf~~~~--~PprGVLLyGPP--------------------------------vG- 455 (646)
++|+|++++|+.|..++..|.+++.++...+ .++++|||+||| +|
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 5899999999999999999988888877664 467999999999 33
Q ss_pred hHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCCC
Q 006411 456 EGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSG 535 (646)
Q Consensus 456 esek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~ 535 (646)
+.++.++.+|+.|+.. +++||+|.+.. .......++++++||.+|||+..
T Consensus 95 d~e~~lr~lf~~a~~~----~~~De~d~~~~-------------------------~~~~~~e~rvl~~LL~~~dg~~~- 144 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKL----VRQQEIAKNRA-------------------------RAEDVAEERILDALLPPAKNQWG- 144 (444)
T ss_dssp CTHHHHHHHHHHHHHH----HHHHHHHSCC--------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhc----chhhhhhhhhc-------------------------cchhhHHHHHHHHHHHHhhcccc-
Confidence 3678888888888764 45788776543 12233457999999999999976
Q ss_pred CCcEEEEEe-cCCCCcCCHHHHh--ccccEEEeCCCCCC
Q 006411 536 SEQILLVGA-TNRPQELDEAARR--RLTKRLYIPLPSSG 571 (646)
Q Consensus 536 ~~~VlVIaA-TNrPd~LDpALlR--RFDr~I~IplPd~G 571 (646)
...| +++ ||+|+.||+||+| |||+.|+|++|+..
T Consensus 145 ~~~v--~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~ 181 (444)
T 1g41_A 145 EVEN--HDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGV 181 (444)
T ss_dssp ---------------------------------------
T ss_pred cccc--ccccccCHHHHHHHHHcCCCcceEEEEcCCCCc
Confidence 3344 455 9999999999999 99999999999873
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.2e-11 Score=123.85 Aligned_cols=139 Identities=24% Similarity=0.351 Sum_probs=98.1
Q ss_pred ccccChHHHHHHHHHHHHhhccCccccccC--CCCCccccccCCCCchHH------------------------------
Q 006411 411 DDIAGLEHAKKCVMEMVIWPLLRPDIFKGC--RSPGKGLLLFGPPIGEGE------------------------------ 458 (646)
Q Consensus 411 dDIgGle~~K~~L~E~V~lPL~~pelf~~~--~~PprGVLLyGPPvGese------------------------------ 458 (646)
++|+|.+.+++.|...+..++.++.+.... ..++.++||||||+.++.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 569999999999999998876665554432 245689999999933332
Q ss_pred ---HHHHHHHHHh-----hhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHc
Q 006411 459 ---KLVRALFGVA-----SCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEME 530 (646)
Q Consensus 459 ---k~Vr~lF~~A-----r~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLD 530 (646)
..++.+|..+ +...++||||||||.+.. .....+.......+.+.|+..|+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~---------------------~~~~~~~~~~~~~~~~~Ll~~le 153 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICK---------------------KGEYSGADVSREGVQRDLLPLVE 153 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSC---------------------CSSCCSSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCc---------------------cccccccchhHHHHHHHHHHHhc
Confidence 3344444422 112478999999999976 32222233333456788999998
Q ss_pred CCCC-------CCCcEEEEEe----cCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 531 GFDS-------GSEQILLVGA----TNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 531 Gl~~-------~~~~VlVIaA----TNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
+..- ...+++||+| |+.|..+++++++||+..|+|+.|+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~ 204 (310)
T 1ofh_A 154 GSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSA 204 (310)
T ss_dssp CCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCH
T ss_pred CCeEecccccccCCcEEEEEcCCcccCCcccCCHHHHhhCCceEEcCCcCH
Confidence 7521 1246888888 67899999999999998899999874
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=2.3e-11 Score=121.53 Aligned_cols=120 Identities=20% Similarity=0.347 Sum_probs=90.0
Q ss_pred CCCccccccCCC----------------------------C----chHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcc
Q 006411 442 SPGKGLLLFGPP----------------------------I----GEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQML 489 (646)
Q Consensus 442 ~PprGVLLyGPP----------------------------v----Gesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~ 489 (646)
.++.++|||||| . +.....++.+|+.+....++||||||||.|+.
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~--- 138 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLD--- 138 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTT---
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhc---
Confidence 567899999999 1 12235678889988888899999999999987
Q ss_pred cccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCH-HHHhccccEEEeCCC
Q 006411 490 PYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDE-AARRRLTKRLYIPLP 568 (646)
Q Consensus 490 ~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDp-ALlRRFDr~I~IplP 568 (646)
.+... ......+++.|+..+++......+++||+|||.|+.||+ .+++||+..|.+|.+
T Consensus 139 ------------------~~~~~--~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l 198 (272)
T 1d2n_A 139 ------------------YVPIG--PRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNI 198 (272)
T ss_dssp ------------------CBTTT--TBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCE
T ss_pred ------------------cCCCC--hhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCc
Confidence 22211 123356778888888887655568999999999999999 566699999999876
Q ss_pred CC------------CCcHHHHHHHHHHH
Q 006411 569 SS------------GYSGSDMKNLVKEA 584 (646)
Q Consensus 569 d~------------GySGADL~~Lc~eA 584 (646)
+. +++..++..+++.+
T Consensus 199 ~~r~~i~~i~~~~~~~~~~~~~~l~~~~ 226 (272)
T 1d2n_A 199 ATGEQLLEALELLGNFKDKERTTIAQQV 226 (272)
T ss_dssp EEHHHHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhcCCCCHHHHHHHHHHh
Confidence 54 56666666665544
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=99.23 E-value=3.3e-11 Score=124.39 Aligned_cols=56 Identities=13% Similarity=0.214 Sum_probs=37.5
Q ss_pred CCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHH
Q 006411 405 DPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGV 467 (646)
Q Consensus 405 ~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~ 467 (646)
.|..+|++|+|.+.+++.+...+.. +. ....+++++||||||+.++...++.+...
T Consensus 38 ~p~~~~~~ivG~~~~~~~l~~l~~~-~~------~~~~~~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 38 EPRQASQGMVGQLAARRAAGVVLEM-IR------EGKIAGRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHH-HH------TTCCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcCcchhhccChHHHHHHHHHHHHH-HH------cCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4566699999999999987665544 11 12245689999999944444445544443
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=99.20 E-value=2.8e-12 Score=142.43 Aligned_cols=127 Identities=21% Similarity=0.277 Sum_probs=86.9
Q ss_pred CcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCC--------------------------------
Q 006411 407 HVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPI-------------------------------- 454 (646)
Q Consensus 407 ~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPv-------------------------------- 454 (646)
.+-++|++|++++++.+.+.+.+....... ++..+||+|||+
T Consensus 77 ~~l~~di~G~~~vk~~i~~~~~l~~~~~~~------~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~ 150 (543)
T 3m6a_A 77 RLLDEEHHGLEKVKERILEYLAVQKLTKSL------KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEI 150 (543)
T ss_dssp GTHHHHCSSCHHHHHHHHHHHHHHHHSSSC------CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-------
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhcccC------CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhh
Confidence 344678999999999999988775443332 457899999991
Q ss_pred --------chHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHH
Q 006411 455 --------GEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFL 526 (646)
Q Consensus 455 --------Gesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL 526 (646)
|.....+..+|..|....| ||||||||.+.. .+.. ...+.||
T Consensus 151 ~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~---------------------~~~~--------~~~~~LL 200 (543)
T 3m6a_A 151 RGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSS---------------------DFRG--------DPSSAML 200 (543)
T ss_dssp -------------CHHHHHHTTCSSSE-EEEEEESSSCC--------------------------------------CCG
T ss_pred hhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhh---------------------hhcc--------CHHHHHH
Confidence 2222334456666665666 999999999976 2211 1345677
Q ss_pred HHHcCCCCC------------CCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 527 IEMEGFDSG------------SEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 527 ~eLDGl~~~------------~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
..||..... ..+|+||+|||+++.|||+|++||+ .|+|+.|+.
T Consensus 201 ~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~R~~-vi~~~~~~~ 255 (543)
T 3m6a_A 201 EVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRDRME-IINIAGYTE 255 (543)
T ss_dssp GGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHHHEE-EEECCCCCH
T ss_pred HHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHhhcc-eeeeCCCCH
Confidence 777643210 1568999999999999999999995 789999975
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.2e-10 Score=116.09 Aligned_cols=128 Identities=20% Similarity=0.216 Sum_probs=93.8
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhh-------------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVAS------------- 469 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar------------- 469 (646)
.+..+.+|++|+|.+.+++.|.+.+..... ...++.+|||+|||+.+++..++.+.....
T Consensus 21 ~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~-------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~ 93 (338)
T 3pfi_A 21 TSLRPSNFDGYIGQESIKKNLNVFIAAAKK-------RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEK 93 (338)
T ss_dssp --CCCCSGGGCCSCHHHHHHHHHHHHHHHH-------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCS
T ss_pred hccCCCCHHHhCChHHHHHHHHHHHHHHHh-------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccc
Confidence 345566999999999999999998876432 123567899999996666666666644321
Q ss_pred ----------hcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCC-----
Q 006411 470 ----------CRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDS----- 534 (646)
Q Consensus 470 ----------~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~----- 534 (646)
...+++|||||||.+.. .+...|+..|+...-
T Consensus 94 ~~~~~~~~~~~~~~~vl~lDEi~~l~~---------------------------------~~~~~Ll~~l~~~~~~~~~~ 140 (338)
T 3pfi_A 94 SGDLAAILTNLSEGDILFIDEIHRLSP---------------------------------AIEEVLYPAMEDYRLDIIIG 140 (338)
T ss_dssp HHHHHHHHHTCCTTCEEEEETGGGCCH---------------------------------HHHHHHHHHHHTSCC-----
T ss_pred hhHHHHHHHhccCCCEEEEechhhcCH---------------------------------HHHHHHHHHHHhccchhhcc
Confidence 13578999999998743 134455555554320
Q ss_pred ----------CCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 535 ----------GSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 535 ----------~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
...+|++|+|||++..+++++++||+..+.|+.|+.
T Consensus 141 ~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~ 186 (338)
T 3pfi_A 141 SGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKD 186 (338)
T ss_dssp ----CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCH
T ss_pred cCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCH
Confidence 112589999999999999999999999999999964
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=9.5e-11 Score=144.52 Aligned_cols=125 Identities=15% Similarity=0.190 Sum_probs=89.5
Q ss_pred CCCCcccccccChHHHHHHHHHHHHhhccC----------cccccc-----------------CCCCCcc--ccccCCC-
Q 006411 404 RDPHVRWDDIAGLEHAKKCVMEMVIWPLLR----------PDIFKG-----------------CRSPGKG--LLLFGPP- 453 (646)
Q Consensus 404 ~~p~VsfdDIgGle~~K~~L~E~V~lPL~~----------pelf~~-----------------~~~PprG--VLLyGPP- 453 (646)
..+.++|+||+|++++|+.+.+.+.+|+.+ ++.|+. .+-+|+| +||||||
T Consensus 1013 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g 1092 (1706)
T 3cmw_A 1013 SASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPES 1092 (1706)
T ss_dssp -----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTT
T ss_pred ccCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCC
Confidence 456799999999999999999999999954 556654 3446788 9999999
Q ss_pred ---------------------------------------------Cch----HHHHHHHHHHHhhhcCCeeeeehhhhHH
Q 006411 454 ---------------------------------------------IGE----GEKLVRALFGVASCRQPAVIFVDEIDSL 484 (646)
Q Consensus 454 ---------------------------------------------vGe----sek~Vr~lF~~Ar~~aPsIIFIDEIDsL 484 (646)
+++ +|+.++.+|..|+..+||+||||+||+|
T Consensus 1093 ~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al 1172 (1706)
T 3cmw_A 1093 SGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAAL 1172 (1706)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGC
T ss_pred CChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhc
Confidence 123 7999999999999999999999999999
Q ss_pred hhhcccccccchhhhhhhhhhccccCCCC--CchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCC
Q 006411 485 LSQMLPYMHVHHIKLFCLKRFYFQRKSDG--EHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRP 548 (646)
Q Consensus 485 ~~k~~~~~~~~~~~~~~~kr~~~~R~s~~--~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrP 548 (646)
++++ . .++..+ ......|+++++|.+||++.. ..+|+|| +||+.
T Consensus 1173 ~~~~----------------~--~~g~~~~~~~~~~~r~~~q~l~~~~~~~~-~~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1173 TPKA----------------E--IEGEIGDSHMGLAARMMSQAMRKLAGNLK-QSNTLLI-FINQI 1218 (1706)
T ss_dssp CCHH----------------H--HHSCTTCCCTTHHHHHHHHHHHHHHHHHH-HTTCEEE-EEECE
T ss_pred Cccc----------------c--cccccccccccHHHHHHHHHHHHHHhhhc-cCCeEEE-Eeccc
Confidence 9821 1 121112 224567899999999999876 4578887 78874
|
| >1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* | Back alignment and structure |
|---|
Probab=98.97 E-value=4.2e-09 Score=106.56 Aligned_cols=197 Identities=19% Similarity=0.210 Sum_probs=118.5
Q ss_pred CCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHH----------------
Q 006411 404 RDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGV---------------- 467 (646)
Q Consensus 404 ~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~---------------- 467 (646)
+..+.+|++++|.+.+++.|.+.+..... ...++.+|||+|||+.+++..++.+...
T Consensus 5 ~~~p~~~~~~ig~~~~~~~l~~~l~~~~~-------~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~ 77 (324)
T 1hqc_A 5 ALRPKTLDEYIGQERLKQKLRVYLEAAKA-------RKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP 77 (324)
T ss_dssp CCCCCSTTTCCSCHHHHHHHHHHHHHHHH-------HCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSH
T ss_pred ccCcccHHHhhCHHHHHHHHHHHHHHHHc-------cCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCCh
Confidence 34566899999999999999988865321 1234578999999955555555554332
Q ss_pred ------hhh--cCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCC------
Q 006411 468 ------ASC--RQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFD------ 533 (646)
Q Consensus 468 ------Ar~--~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~------ 533 (646)
... ..+.+|||||||.+.. .....|+..|+...
T Consensus 78 ~~l~~~l~~~~~~~~~l~lDEi~~l~~---------------------------------~~~~~L~~~l~~~~~~~v~~ 124 (324)
T 1hqc_A 78 GDLAAILANSLEEGDILFIDEIHRLSR---------------------------------QAEEHLYPAMEDFVMDIVIG 124 (324)
T ss_dssp HHHHHHHTTTCCTTCEEEETTTTSCCH---------------------------------HHHHHHHHHHHHSEEEECCS
T ss_pred HHHHHHHHHhccCCCEEEEECCccccc---------------------------------chHHHHHHHHHhhhhHHhcc
Confidence 222 3578999999997743 12233444444321
Q ss_pred --C-------CCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC----------------CCcHHHHHHHHHHHh--h
Q 006411 534 --S-------GSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS----------------GYSGSDMKNLVKEAS--M 586 (646)
Q Consensus 534 --~-------~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~----------------GySGADL~~Lc~eAa--~ 586 (646)
. ...++.+|+|||++..+++++++||+..+.+++|+. .++...+..++..+. .
T Consensus 125 ~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~ 204 (324)
T 1hqc_A 125 QGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTM 204 (324)
T ss_dssp SSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCH
T ss_pred ccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCH
Confidence 0 013588999999999999999999999999999864 233333333333220 0
Q ss_pred hHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCC---CCCHHHHHHHHHHHHHhC
Q 006411 587 GPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRA---SVSLNELGIYEEWNKQFG 642 (646)
Q Consensus 587 ~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrP---Svs~~dl~~ye~w~k~fg 642 (646)
..+...+..... .........|+.+++..++..+.. +....+...+....+.|+
T Consensus 205 r~l~~~l~~~~~--~a~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~e~~~i~~~~~~~~ 261 (324)
T 1hqc_A 205 RVAKRLFRRVRD--FAQVAGEEVITRERALEALAALGLDELGLEKRDREILEVLILRFG 261 (324)
T ss_dssp HHHHHHHHHHTT--TSTTTSCSCCCHHHHHHHHHHHTCCTTCCCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHH--HHHHhcCCCCCHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHhc
Confidence 111111110000 001112346888898888876643 234445556666666653
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
Probab=98.95 E-value=2.6e-09 Score=111.50 Aligned_cols=100 Identities=24% Similarity=0.370 Sum_probs=67.4
Q ss_pred cccChHHHHHHHHHHHHhhccCcccc---ccCCCCCccccccCCC--------------------------------Cch
Q 006411 412 DIAGLEHAKKCVMEMVIWPLLRPDIF---KGCRSPGKGLLLFGPP--------------------------------IGE 456 (646)
Q Consensus 412 DIgGle~~K~~L~E~V~lPL~~pelf---~~~~~PprGVLLyGPP--------------------------------vGe 456 (646)
.|+|.+.+++.|...+.......... .....++.+|||+||| +|.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 47999999999999886544332211 1222467899999999 122
Q ss_pred H-HHHHHHHHHHh----hhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCC--CCchhhHHHHHHHHHHH
Q 006411 457 G-EKLVRALFGVA----SCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSD--GEHESSRRLKTQFLIEM 529 (646)
Q Consensus 457 s-ek~Vr~lF~~A----r~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~--~~~e~s~rilneLL~eL 529 (646)
. +..++.+|..+ ....|+||||||||.+.. .+... +......++.+.||..|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~---------------------~~~~~~~~~~~~~~~~~~~Ll~~l 154 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISR---------------------KSDNPSITRDVSGEGVQQALLKLI 154 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCC---------------------CSSCC---CHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcc---------------------cccccccccccchHHHHHHHHHHh
Confidence 2 44566667665 445689999999999986 33222 12223345899999999
Q ss_pred cCC
Q 006411 530 EGF 532 (646)
Q Consensus 530 DGl 532 (646)
||.
T Consensus 155 eg~ 157 (363)
T 3hws_A 155 EGT 157 (363)
T ss_dssp HCC
T ss_pred cCc
Confidence 964
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.8e-08 Score=93.98 Aligned_cols=118 Identities=18% Similarity=0.154 Sum_probs=84.4
Q ss_pred CCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHh---------------
Q 006411 404 RDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVA--------------- 468 (646)
Q Consensus 404 ~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~A--------------- 468 (646)
+.++.+|++++|.+.+++.|.+.+... .+..+||+|||+.++...++.+.+.+
T Consensus 10 ~~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~ 77 (226)
T 2chg_A 10 KYRPRTLDEVVGQDEVIQRLKGYVERK------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS 77 (226)
T ss_dssp HTSCSSGGGCCSCHHHHHHHHHHHHTT------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETT
T ss_pred hcCCCCHHHHcCcHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccc
Confidence 356788999999999999998887541 12349999999555555555544332
Q ss_pred ----------------h-----hcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHH
Q 006411 469 ----------------S-----CRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLI 527 (646)
Q Consensus 469 ----------------r-----~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~ 527 (646)
. ...+.||||||+|.+.. ...+.|+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~---------------------------------~~~~~l~~ 124 (226)
T 2chg_A 78 DERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA---------------------------------DAQAALRR 124 (226)
T ss_dssp CTTCHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH---------------------------------HHHHHHHH
T ss_pred cccChHHHHHHHHHHhcccCCCccCceEEEEeChhhcCH---------------------------------HHHHHHHH
Confidence 0 13577888898887743 12344555
Q ss_pred HHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 528 EMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 528 eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
.++... .++.+|++||.+..+++++++||. .+.++.|+.
T Consensus 125 ~l~~~~---~~~~~i~~~~~~~~~~~~l~~r~~-~i~~~~~~~ 163 (226)
T 2chg_A 125 TMEMYS---KSCRFILSCNYVSRIIEPIQSRCA-VFRFKPVPK 163 (226)
T ss_dssp HHHHTT---TTEEEEEEESCGGGSCHHHHTTSE-EEECCCCCH
T ss_pred HHHhcC---CCCeEEEEeCChhhcCHHHHHhCc-eeecCCCCH
Confidence 555532 468889999999999999999998 788888763
|
| >1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* | Back alignment and structure |
|---|
Probab=98.92 E-value=1.1e-08 Score=116.75 Aligned_cols=192 Identities=21% Similarity=0.291 Sum_probs=119.3
Q ss_pred cccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCC----------------------------------
Q 006411 408 VRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP---------------------------------- 453 (646)
Q Consensus 408 VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPP---------------------------------- 453 (646)
-+|++|+|-+..++.+.+.+.. ..+.++||+|||
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l~~------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~ 250 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVLCR------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCC
T ss_pred CCCCCccCCHHHHHHHHHHHhc------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcH
Confidence 3689999999988888776643 135789999999
Q ss_pred ---------CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHH
Q 006411 454 ---------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQ 524 (646)
Q Consensus 454 ---------vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilne 524 (646)
.|+.+..++.+|+.+....++||||||||.|++ .+..... ...+
T Consensus 251 ~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~---------------------~~~~~~~---~~~~--- 303 (758)
T 1r6b_X 251 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIG---------------------AGAASGG---QVDA--- 303 (758)
T ss_dssp C---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTT---------------------SCCSSSC---HHHH---
T ss_pred HHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhh---------------------cCCCCcc---hHHH---
Confidence 234566777888888777899999999999987 2221111 1122
Q ss_pred HHHHHcCCCCCCCcEEEEEecCCCC-----cCCHHHHhccccEEEeCCCCC--------------------CCcHHHHHH
Q 006411 525 FLIEMEGFDSGSEQILLVGATNRPQ-----ELDEAARRRLTKRLYIPLPSS--------------------GYSGSDMKN 579 (646)
Q Consensus 525 LL~eLDGl~~~~~~VlVIaATNrPd-----~LDpALlRRFDr~I~IplPd~--------------------GySGADL~~ 579 (646)
.+.+..+-. ...+.+|+|||.++ .+|+++.|||+ .|.|+.|+. -++...+..
T Consensus 304 -~~~L~~~l~-~~~~~~I~at~~~~~~~~~~~d~aL~~Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~ 380 (758)
T 1r6b_X 304 -ANLIKPLLS-SGKIRVIGSTTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRA 380 (758)
T ss_dssp -HHHHSSCSS-SCCCEEEEEECHHHHHCCCCCTTSSGGGEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred -HHHHHHHHh-CCCeEEEEEeCchHHhhhhhcCHHHHhCce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 223333333 45788999999753 68999999998 689999985 133333333
Q ss_pred HHHHHhhh--------HHHHHHHhchhhhhh--cccCCCCccHHHHHHHHhhcC----CCCCHHHHHHHHHHHHHh
Q 006411 580 LVKEASMG--------PLREALRQGIEITRL--QKEDMQPVTLQDFENALPQVR----ASVSLNELGIYEEWNKQF 641 (646)
Q Consensus 580 Lc~eAa~~--------Airr~l~~~~~~~~~--~~~~~~~Vt~eDFe~AL~kvr----PSvs~~dl~~ye~w~k~f 641 (646)
++..+... .+...+......... .......|+.+|+..++..+. +.+.+++.+.+....+.+
T Consensus 381 ~~~~s~~~i~~~~lp~~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~~~ip~~~~~~~~~~~l~~l~~~l 456 (758)
T 1r6b_X 381 AVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRL 456 (758)
T ss_dssp HHHHHHHHCTTSCTTHHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHHSCCCCCCSSSSHHHHHHHHHHHH
T ss_pred HHHHhhhhcccccCchHHHHHHHHHHHHHhcccccccCCccCHHHHHHHHHHhcCCCccccchhHHHHHHHHHHHH
Confidence 33222110 000111110000011 112245799999999998864 256677777766655544
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.90 E-value=2.5e-09 Score=97.89 Aligned_cols=121 Identities=17% Similarity=0.263 Sum_probs=80.5
Q ss_pred CcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHH---------------------------
Q 006411 407 HVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEK--------------------------- 459 (646)
Q Consensus 407 ~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek--------------------------- 459 (646)
+-+|+++.|.+...+.+.+.+.. ..+.++||+|||+.++..
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (187)
T 2p65_A 18 AGKLDPVIGRDTEIRRAIQILSR------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLD 85 (187)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEEC
T ss_pred ccccchhhcchHHHHHHHHHHhC------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEe
Confidence 45789999999988888776633 224689999999322222
Q ss_pred ----------------HHHHHHHHhhhc-CCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHH
Q 006411 460 ----------------LVRALFGVASCR-QPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLK 522 (646)
Q Consensus 460 ----------------~Vr~lF~~Ar~~-aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~ril 522 (646)
.++.+|..+... .|+||||||+|.+.. .+....... .+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~---------------------~~~~~~~~~---~~~ 141 (187)
T 2p65_A 86 LSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVG---------------------AGAVAEGAL---DAG 141 (187)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSS---------------------SSSSCTTSC---CTH
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcc---------------------cccccccch---HHH
Confidence 234444444333 688999999999975 222111111 123
Q ss_pred HHHHHHHcCCCCCCCcEEEEEecCCCC-----cCCHHHHhccccEEEeCCCC
Q 006411 523 TQFLIEMEGFDSGSEQILLVGATNRPQ-----ELDEAARRRLTKRLYIPLPS 569 (646)
Q Consensus 523 neLL~eLDGl~~~~~~VlVIaATNrPd-----~LDpALlRRFDr~I~IplPd 569 (646)
+.|+..++. .+++||++||.+. .+|+++++||+. |++++|+
T Consensus 142 ~~l~~~~~~-----~~~~ii~~~~~~~~~~~~~~~~~l~~R~~~-i~i~~p~ 187 (187)
T 2p65_A 142 NILKPMLAR-----GELRCIGATTVSEYRQFIEKDKALERRFQQ-ILVEQPS 187 (187)
T ss_dssp HHHHHHHHT-----TCSCEEEEECHHHHHHHTTTCHHHHHHEEE-EECCSCC
T ss_pred HHHHHHHhc-----CCeeEEEecCHHHHHHHHhccHHHHHhcCc-ccCCCCC
Confidence 333334432 4688999999876 699999999995 8999996
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.89 E-value=2.9e-09 Score=97.13 Aligned_cols=121 Identities=20% Similarity=0.369 Sum_probs=79.9
Q ss_pred CCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHH------------------------
Q 006411 406 PHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLV------------------------ 461 (646)
Q Consensus 406 p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~V------------------------ 461 (646)
.+.+|+++.|.++..+.|.+.+.. ..+.++||+|||+.++...+
T Consensus 17 ~~~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (195)
T 1jbk_A 17 EQGKLDPVIGRDEEIRRTIQVLQR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 84 (195)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHTS------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEE
T ss_pred hhccccccccchHHHHHHHHHHhc------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEe
Confidence 456799999999988888877533 22578999999933333333
Q ss_pred -------------------HHHHHHh-hhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHH
Q 006411 462 -------------------RALFGVA-SCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRL 521 (646)
Q Consensus 462 -------------------r~lF~~A-r~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~ri 521 (646)
+.+|..+ +...|+||||||+|.+.. .+...... ....+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~---------------------~~~~~~~~-~~~~~ 142 (195)
T 1jbk_A 85 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVG---------------------AGKADGAM-DAGNM 142 (195)
T ss_dssp CHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT---------------------------CC-CCHHH
T ss_pred eHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhc---------------------cCcccchH-HHHHH
Confidence 3334333 234588999999999976 22111111 11223
Q ss_pred HHHHHHHHcCCCCCCCcEEEEEecCCCC-----cCCHHHHhccccEEEeCCCC
Q 006411 522 KTQFLIEMEGFDSGSEQILLVGATNRPQ-----ELDEAARRRLTKRLYIPLPS 569 (646)
Q Consensus 522 lneLL~eLDGl~~~~~~VlVIaATNrPd-----~LDpALlRRFDr~I~IplPd 569 (646)
+..++ + ..++.+|++||.++ .+|+++++||+ .|+++.|+
T Consensus 143 l~~~~---~-----~~~~~~i~~~~~~~~~~~~~~~~~l~~r~~-~i~~~~p~ 186 (195)
T 1jbk_A 143 LKPAL---A-----RGELHCVGATTLDEYRQYIEKDAALERRFQ-KVFVAEPS 186 (195)
T ss_dssp HHHHH---H-----TTSCCEEEEECHHHHHHHTTTCHHHHTTEE-EEECCCCC
T ss_pred HHHhh---c-----cCCeEEEEeCCHHHHHHHHhcCHHHHHHhc-eeecCCCC
Confidence 33333 2 24678899999987 79999999998 68999986
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=2.7e-08 Score=93.50 Aligned_cols=127 Identities=17% Similarity=0.196 Sum_probs=89.2
Q ss_pred CCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhh-------------
Q 006411 404 RDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASC------------- 470 (646)
Q Consensus 404 ~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~------------- 470 (646)
...+.+|++++|.+.+++.|.+.+.. +..+..+||+|||+.++...++.+......
T Consensus 16 ~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~ 84 (250)
T 1njg_A 16 KWRPQTFADVVGQEHVLTALANGLSL-----------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 84 (250)
T ss_dssp HTCCCSGGGCCSCHHHHHHHHHHHHH-----------TCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSH
T ss_pred ccCCccHHHHhCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 35567899999999999999888754 123468999999966566666665544321
Q ss_pred ----------------------------------------cCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccC
Q 006411 471 ----------------------------------------RQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRK 510 (646)
Q Consensus 471 ----------------------------------------~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~ 510 (646)
..|.||||||+|.+..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~------------------------ 140 (250)
T 1njg_A 85 NCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR------------------------ 140 (250)
T ss_dssp HHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCH------------------------
T ss_pred HHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccH------------------------
Confidence 1356777777776532
Q ss_pred CCCCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCCCCcHHHHHHHHH
Q 006411 511 SDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSSGYSGSDMKNLVK 582 (646)
Q Consensus 511 s~~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~GySGADL~~Lc~ 582 (646)
...+.|+..++.. ..++.+|++||.+..+++++++|+ ..|+++.|+. .++..++.
T Consensus 141 ---------~~~~~l~~~l~~~---~~~~~~i~~t~~~~~~~~~l~~r~-~~i~l~~l~~----~e~~~~l~ 195 (250)
T 1njg_A 141 ---------HSFNALLKTLEEP---PEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDV----EQIRHQLE 195 (250)
T ss_dssp ---------HHHHHHHHHHHSC---CTTEEEEEEESCGGGSCHHHHTTS-EEEECCCCCH----HHHHHHHH
T ss_pred ---------HHHHHHHHHHhcC---CCceEEEEEeCChHhCCHHHHHHh-hhccCCCCCH----HHHHHHHH
Confidence 2456677777754 347899999999999999999996 5778888764 44444443
|
| >1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G | Back alignment and structure |
|---|
Probab=98.86 E-value=4.2e-08 Score=100.03 Aligned_cols=33 Identities=21% Similarity=0.339 Sum_probs=29.4
Q ss_pred cEEEEEecCCCC-cCCHHHHhccccEEEeCCCCC
Q 006411 538 QILLVGATNRPQ-ELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 538 ~VlVIaATNrPd-~LDpALlRRFDr~I~IplPd~ 570 (646)
+++||+|||..+ .++++|++||+.++.++.|+.
T Consensus 187 ~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~ 220 (350)
T 1g8p_A 187 RFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRD 220 (350)
T ss_dssp CEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCS
T ss_pred ceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCc
Confidence 699999999745 899999999999999999954
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=98.79 E-value=8.6e-08 Score=91.47 Aligned_cols=122 Identities=12% Similarity=0.110 Sum_probs=78.0
Q ss_pred CCCcccccccCh---HHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhh-----------
Q 006411 405 DPHVRWDDIAGL---EHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASC----------- 470 (646)
Q Consensus 405 ~p~VsfdDIgGl---e~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~----------- 470 (646)
.|..+|+++.|- +.+.+.|...+..+ .+.++||+|||+.++...++.+...+..
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 22 PDDETFTSYYPAAGNDELIGALKSAASGD------------GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLG 89 (242)
T ss_dssp CTTCSTTTSCC--CCHHHHHHHHHHHHTC------------SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCCCChhhccCCCCCHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 345789999872 45666666655431 3578999999977777777777665542
Q ss_pred -------------cCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCCCCC
Q 006411 471 -------------RQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSE 537 (646)
Q Consensus 471 -------------~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~~~ 537 (646)
..|.||||||+|.+.. .. .....|+..++.... ..
T Consensus 90 ~~~~~~~~~~~~~~~~~vliiDe~~~~~~---------------------~~----------~~~~~l~~~l~~~~~-~~ 137 (242)
T 3bos_A 90 IHASISTALLEGLEQFDLICIDDVDAVAG---------------------HP----------LWEEAIFDLYNRVAE-QK 137 (242)
T ss_dssp GGGGSCGGGGTTGGGSSEEEEETGGGGTT---------------------CH----------HHHHHHHHHHHHHHH-HC
T ss_pred HHHHHHHHHHHhccCCCEEEEeccccccC---------------------CH----------HHHHHHHHHHHHHHH-cC
Confidence 1377889999888754 10 112233333333322 22
Q ss_pred cE-EEEEecCCCC---cCCHHHHhccc--cEEEeCCCCC
Q 006411 538 QI-LLVGATNRPQ---ELDEAARRRLT--KRLYIPLPSS 570 (646)
Q Consensus 538 ~V-lVIaATNrPd---~LDpALlRRFD--r~I~IplPd~ 570 (646)
.+ +|+.++..+. .+++++++||. ..++++.|+.
T Consensus 138 ~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~ 176 (242)
T 3bos_A 138 RGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMD 176 (242)
T ss_dssp SCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCG
T ss_pred CCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCH
Confidence 34 5555555554 56799999986 8999999986
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=98.78 E-value=5.9e-08 Score=99.31 Aligned_cols=127 Identities=20% Similarity=0.170 Sum_probs=84.1
Q ss_pred CcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHH--------------------
Q 006411 407 HVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFG-------------------- 466 (646)
Q Consensus 407 ~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~-------------------- 466 (646)
....+++.|-+..++.|.+.+...+. ...+..+||||||+.++...++.+..
T Consensus 15 ~~~p~~~~gr~~~~~~l~~~l~~~~~--------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 86 (387)
T 2v1u_A 15 DYVPDVLPHREAELRRLAEVLAPALR--------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNA 86 (387)
T ss_dssp TCCCSCCTTCHHHHHHHHHTTGGGTS--------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEET
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEC
Confidence 34458999999999998886644211 23457899999993333333333322
Q ss_pred -------------------------------------Hhhhc-CCeeeeehhhhHHhhhcccccccchhhhhhhhhhccc
Q 006411 467 -------------------------------------VASCR-QPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQ 508 (646)
Q Consensus 467 -------------------------------------~Ar~~-aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~ 508 (646)
.+... .|+||||||+|.+.. .
T Consensus 87 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~---------------------~ 145 (387)
T 2v1u_A 87 RHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPK---------------------R 145 (387)
T ss_dssp TTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHH---------------------S
T ss_pred CcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcc---------------------c
Confidence 22222 377899999998865 1
Q ss_pred cCCCCCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCC---CcCCHHHHhcccc-EEEeCCCCC
Q 006411 509 RKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRP---QELDEAARRRLTK-RLYIPLPSS 570 (646)
Q Consensus 509 R~s~~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrP---d~LDpALlRRFDr-~I~IplPd~ 570 (646)
+ ....++..|+..++.... ..++.||++||.+ +.+++++++||.. .|.+++|+.
T Consensus 146 ~-------~~~~~l~~l~~~~~~~~~-~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~ 203 (387)
T 2v1u_A 146 P-------GGQDLLYRITRINQELGD-RVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTA 203 (387)
T ss_dssp T-------THHHHHHHHHHGGGCC------CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCH
T ss_pred C-------CCChHHHhHhhchhhcCC-CceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCH
Confidence 1 123566777777665531 3478999999998 7899999999986 788888763
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
Probab=98.76 E-value=2.5e-08 Score=101.59 Aligned_cols=120 Identities=15% Similarity=0.104 Sum_probs=85.0
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHH------------------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRAL------------------ 464 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~l------------------ 464 (646)
.+..+.+|++|+|.+++++.|++++.. +.++..+|++|||+.++...++.+
T Consensus 18 ~k~rP~~~~~ivg~~~~~~~l~~~l~~-----------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~~ 86 (324)
T 3u61_B 18 QKYRPSTIDECILPAFDKETFKSITSK-----------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCKI 86 (324)
T ss_dssp HHSCCCSTTTSCCCHHHHHHHHHHHHT-----------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCCH
T ss_pred HhhCCCCHHHHhCcHHHHHHHHHHHHc-----------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccCH
Confidence 345668999999999999999988862 334577889998933333333332
Q ss_pred ------HHH-hhhc----CCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCC
Q 006411 465 ------FGV-ASCR----QPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFD 533 (646)
Q Consensus 465 ------F~~-Ar~~----aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~ 533 (646)
+.. +... .+.||||||+|.+.. ....+.|+..|+...
T Consensus 87 ~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~--------------------------------~~~~~~L~~~le~~~ 134 (324)
T 3u61_B 87 DFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL--------------------------------AESQRHLRSFMEAYS 134 (324)
T ss_dssp HHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG--------------------------------HHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHhhcccCCCCeEEEEECCcccCc--------------------------------HHHHHHHHHHHHhCC
Confidence 222 2221 578999999998852 112345566565443
Q ss_pred CCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCC
Q 006411 534 SGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPS 569 (646)
Q Consensus 534 ~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd 569 (646)
.++.+|+|||.+..+++++++||. .+.|+.|+
T Consensus 135 ---~~~~iI~~~n~~~~l~~~l~sR~~-~i~~~~~~ 166 (324)
T 3u61_B 135 ---SNCSIIITANNIDGIIKPLQSRCR-VITFGQPT 166 (324)
T ss_dssp ---GGCEEEEEESSGGGSCTTHHHHSE-EEECCCCC
T ss_pred ---CCcEEEEEeCCccccCHHHHhhCc-EEEeCCCC
Confidence 367889999999999999999995 68999987
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.72 E-value=5.3e-08 Score=105.96 Aligned_cols=125 Identities=24% Similarity=0.338 Sum_probs=84.3
Q ss_pred CCCcccccccChHHHH---HHHHHHHHhhccCccccccCCCCCccccccCCC------------------------CchH
Q 006411 405 DPHVRWDDIAGLEHAK---KCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP------------------------IGEG 457 (646)
Q Consensus 405 ~p~VsfdDIgGle~~K---~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPP------------------------vGes 457 (646)
..+.+|++|+|.++++ ..|...+... . ..++|||||| .+.+
T Consensus 20 ~rP~~l~~ivGq~~~~~~~~~L~~~i~~~-----------~-~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~~ 87 (447)
T 3pvs_A 20 MRPENLAQYIGQQHLLAAGKPLPRAIEAG-----------H-LHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSG 87 (447)
T ss_dssp TCCCSTTTCCSCHHHHSTTSHHHHHHHHT-----------C-CCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTCC
T ss_pred hCCCCHHHhCCcHHHHhchHHHHHHHHcC-----------C-CcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccCC
Confidence 3467899999999999 7777777541 1 2689999999 3334
Q ss_pred HHHHHHHHHHhhh----cCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCC
Q 006411 458 EKLVRALFGVASC----RQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFD 533 (646)
Q Consensus 458 ek~Vr~lF~~Ar~----~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~ 533 (646)
.+.++.+|..|.. ..+.||||||||.+.. . ..+.||..|+.
T Consensus 88 ~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~---------------------~------------~q~~LL~~le~-- 132 (447)
T 3pvs_A 88 VKEIREAIERARQNRNAGRRTILFVDEVHRFNK---------------------S------------QQDAFLPHIED-- 132 (447)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEETTTCC---------------------------------------CCHHHHHT--
T ss_pred HHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCH---------------------H------------HHHHHHHHHhc--
Confidence 5567777777653 3689999999998853 1 12345666654
Q ss_pred CCCCcEEEEEec--CCCCcCCHHHHhccccEEEeCCCCCCCcHHHHHHHHHHH
Q 006411 534 SGSEQILLVGAT--NRPQELDEAARRRLTKRLYIPLPSSGYSGSDMKNLVKEA 584 (646)
Q Consensus 534 ~~~~~VlVIaAT--NrPd~LDpALlRRFDr~I~IplPd~GySGADL~~Lc~eA 584 (646)
..|++|++| |....|+++|++|+. .+.++.|+ ..|+..++..+
T Consensus 133 ---~~v~lI~att~n~~~~l~~aL~sR~~-v~~l~~l~----~edi~~il~~~ 177 (447)
T 3pvs_A 133 ---GTITFIGATTENPSFELNSALLSRAR-VYLLKSLS----TEDIEQVLTQA 177 (447)
T ss_dssp ---TSCEEEEEESSCGGGSSCHHHHTTEE-EEECCCCC----HHHHHHHHHHH
T ss_pred ---CceEEEecCCCCcccccCHHHhCcee-EEeeCCcC----HHHHHHHHHHH
Confidence 246777766 445689999999987 56677775 34555444443
|
| >1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.69 E-value=3.4e-08 Score=103.37 Aligned_cols=76 Identities=25% Similarity=0.373 Sum_probs=49.0
Q ss_pred ccccChHHHHHHHHHHHHhhccCccc------------------cccCCCCCccccccCCCCchH---------------
Q 006411 411 DDIAGLEHAKKCVMEMVIWPLLRPDI------------------FKGCRSPGKGLLLFGPPIGEG--------------- 457 (646)
Q Consensus 411 dDIgGle~~K~~L~E~V~lPL~~pel------------------f~~~~~PprGVLLyGPPvGes--------------- 457 (646)
++|+|.+.+|+.|...+..++.+... +.....++.++||||||+.++
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~ 100 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPI 100 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 46899999999999988654443321 112334568899999992222
Q ss_pred ------------------HHHHHHHHHHhh----hcCCeeeeehhhhHHhh
Q 006411 458 ------------------EKLVRALFGVAS----CRQPAVIFVDEIDSLLS 486 (646)
Q Consensus 458 ------------------ek~Vr~lF~~Ar----~~aPsIIFIDEIDsL~~ 486 (646)
+..+..+|..+. ...++||||||||.+..
T Consensus 101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~ 151 (376)
T 1um8_A 101 AISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISR 151 (376)
T ss_dssp EEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--
T ss_pred EEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhh
Confidence 223444444332 23689999999999976
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=1.3e-07 Score=94.95 Aligned_cols=136 Identities=15% Similarity=0.181 Sum_probs=90.6
Q ss_pred ccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHh----------------------
Q 006411 411 DDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVA---------------------- 468 (646)
Q Consensus 411 dDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~A---------------------- 468 (646)
.+|.|.+.+++.|...+....... .....|...+||+|||+.++...++.+....
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~---~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGL---KDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVS 93 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTC---SCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCC---CCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHH
Confidence 468899999999998887632110 1112344579999999555555555444332
Q ss_pred ----------------------hhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHH
Q 006411 469 ----------------------SCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFL 526 (646)
Q Consensus 469 ----------------------r~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL 526 (646)
.....+||||||||.+.. .+.+.|+
T Consensus 94 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~---------------------------------~~~~~Ll 140 (311)
T 4fcw_A 94 RLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHP---------------------------------DVFNILL 140 (311)
T ss_dssp HHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCH---------------------------------HHHHHHH
T ss_pred HhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCH---------------------------------HHHHHHH
Confidence 122337888888886632 3556677
Q ss_pred HHHcCCCC--------CCCcEEEEEecCC--------------------------CCcCCHHHHhccccEEEeCCCCCCC
Q 006411 527 IEMEGFDS--------GSEQILLVGATNR--------------------------PQELDEAARRRLTKRLYIPLPSSGY 572 (646)
Q Consensus 527 ~eLDGl~~--------~~~~VlVIaATNr--------------------------Pd~LDpALlRRFDr~I~IplPd~Gy 572 (646)
..|+.-.- .-.+++||+|||. ...++++++.||+..+.+++|+
T Consensus 141 ~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~--- 217 (311)
T 4fcw_A 141 QMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLT--- 217 (311)
T ss_dssp HHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCC---
T ss_pred HHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCC---
Confidence 77764321 0136889999999 5579999999999999998876
Q ss_pred cHHHHHHHHHHHhh
Q 006411 573 SGSDMKNLVKEASM 586 (646)
Q Consensus 573 SGADL~~Lc~eAa~ 586 (646)
..|+..+++....
T Consensus 218 -~~~~~~i~~~~l~ 230 (311)
T 4fcw_A 218 -KEQIRQIVEIQMS 230 (311)
T ss_dssp -HHHHHHHHHHHTH
T ss_pred -HHHHHHHHHHHHH
Confidence 4677777665443
|
| >2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=98.58 E-value=6e-07 Score=91.84 Aligned_cols=114 Identities=17% Similarity=0.176 Sum_probs=77.8
Q ss_pred cccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhh-------------------
Q 006411 410 WDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASC------------------- 470 (646)
Q Consensus 410 fdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~------------------- 470 (646)
+++|.|.+++++.+...+.. ..++||||||+.++...++.+-.....
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~--------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~ 91 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICT--------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGT 91 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHH--------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEE
T ss_pred ccceeCcHHHHHHHHHHHHc--------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCc
Confidence 47899999999888777654 258999999966666666666443210
Q ss_pred -------------cC---CeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCC-
Q 006411 471 -------------RQ---PAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFD- 533 (646)
Q Consensus 471 -------------~a---PsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~- 533 (646)
.. .+||||||||.+.. .+.+.|+..|+...
T Consensus 92 ~~~~~~~~~~~~~~g~l~~~vl~iDEi~~~~~---------------------------------~~~~~Ll~~l~~~~~ 138 (331)
T 2r44_A 92 MIYNQHKGNFEVKKGPVFSNFILADEVNRSPA---------------------------------KVQSALLECMQEKQV 138 (331)
T ss_dssp EEEETTTTEEEEEECTTCSSEEEEETGGGSCH---------------------------------HHHHHHHHHHHHSEE
T ss_pred eeecCCCCceEeccCcccccEEEEEccccCCH---------------------------------HHHHHHHHHHhcCce
Confidence 01 15888888886533 23455555555321
Q ss_pred -------CCCCcEEEEEecCCCC-----cCCHHHHhccccEEEeCCCCC
Q 006411 534 -------SGSEQILLVGATNRPQ-----ELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 534 -------~~~~~VlVIaATNrPd-----~LDpALlRRFDr~I~IplPd~ 570 (646)
....+++||+|+|.++ .|++++++||+.++.++.|+.
T Consensus 139 ~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~ 187 (331)
T 2r44_A 139 TIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDK 187 (331)
T ss_dssp EETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCH
T ss_pred eeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHhheeEEEEcCCCCH
Confidence 1134678888888433 399999999999999999975
|
| >2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A | Back alignment and structure |
|---|
Probab=98.57 E-value=2.7e-07 Score=92.24 Aligned_cols=119 Identities=18% Similarity=0.174 Sum_probs=82.6
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhh-------------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVAS------------- 469 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar------------- 469 (646)
.+..+.+|++++|.+.+++.|.+.+.. +..+ .+||||||+.+....++.+.+...
T Consensus 9 ~k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 76 (319)
T 2chq_A 9 EKYRPRTLDEVVGQDEVIQRLKGYVER-----------KNIP-HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA 76 (319)
T ss_dssp TTTSCSSGGGSCSCHHHHHHHHTTTTT-----------TCCC-CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEET
T ss_pred HhcCCCCHHHHhCCHHHHHHHHHHHhC-----------CCCC-eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeC
Confidence 456778999999999999988776532 2222 399999995555555555443321
Q ss_pred -----------------------hcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHH
Q 006411 470 -----------------------CRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFL 526 (646)
Q Consensus 470 -----------------------~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL 526 (646)
...+.||||||+|.+.. ...+.|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~---------------------------------~~~~~L~ 123 (319)
T 2chq_A 77 SDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA---------------------------------DAQAALR 123 (319)
T ss_dssp TSTTCTTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH---------------------------------HHHHTTG
T ss_pred ccccChHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH---------------------------------HHHHHHH
Confidence 02356777777776632 1234455
Q ss_pred HHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 527 IEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 527 ~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
..|+.. ..++.+|++||.+..+++++++|+. .+.+++|+.
T Consensus 124 ~~le~~---~~~~~~i~~~~~~~~l~~~l~sr~~-~i~~~~~~~ 163 (319)
T 2chq_A 124 RTMEMY---SKSCRFILSCNYVSRIIEPIQSRCA-VFRFKPVPK 163 (319)
T ss_dssp GGTSSS---SSSEEEEEEESCGGGSCHHHHTTCE-EEECCCCCH
T ss_pred HHHHhc---CCCCeEEEEeCChhhcchHHHhhCe-EEEecCCCH
Confidence 555543 3478899999999999999999997 788888864
|
| >1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.57 E-value=1.3e-07 Score=104.08 Aligned_cols=133 Identities=13% Similarity=0.108 Sum_probs=85.8
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHh-hccCccccccCC----CCCccccccCCCCchHHHHHHHHHHHh---------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIW-PLLRPDIFKGCR----SPGKGLLLFGPPIGEGEKLVRALFGVA--------- 468 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~l-PL~~pelf~~~~----~PprGVLLyGPPvGesek~Vr~lF~~A--------- 468 (646)
++..+.+|+||+|.+.+++.|.+++.. +...+..|...+ .+++++||||||+.++...++.+...+
T Consensus 31 ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~ 110 (516)
T 1sxj_A 31 VKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNA 110 (516)
T ss_dssp HHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECT
T ss_pred cccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeC
Confidence 356678999999999999999998875 222233444332 256899999999555555555553322
Q ss_pred ----------------------------------hhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCC
Q 006411 469 ----------------------------------SCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGE 514 (646)
Q Consensus 469 ----------------------------------r~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~ 514 (646)
....++||||||||.+.. ..
T Consensus 111 s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~---------------------~~----- 164 (516)
T 1sxj_A 111 SDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSG---------------------GD----- 164 (516)
T ss_dssp TSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCT---------------------TS-----
T ss_pred CCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccch---------------------hh-----
Confidence 114578999999999865 11
Q ss_pred chhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 515 HESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 515 ~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
. ..++.|+..++.. ...|++|+++..+..+.+ ++|+...|.|+.|+.
T Consensus 165 ~----~~l~~L~~~l~~~---~~~iIli~~~~~~~~l~~--l~~r~~~i~f~~~~~ 211 (516)
T 1sxj_A 165 R----GGVGQLAQFCRKT---STPLILICNERNLPKMRP--FDRVCLDIQFRRPDA 211 (516)
T ss_dssp T----THHHHHHHHHHHC---SSCEEEEESCTTSSTTGG--GTTTSEEEECCCCCH
T ss_pred H----HHHHHHHHHHHhc---CCCEEEEEcCCCCccchh--hHhceEEEEeCCCCH
Confidence 0 1245555555543 234666666555555553 345566889999975
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.57 E-value=2.3e-07 Score=94.55 Aligned_cols=171 Identities=14% Similarity=0.171 Sum_probs=103.1
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhh------------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASC------------ 470 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~------------ 470 (646)
.+..+.+|++|+|.+++++.|...+.. +.+ ..+||||||+.++...++.+......
T Consensus 29 ~k~~p~~~~~i~g~~~~~~~l~~~l~~-----------~~~-~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~ 96 (353)
T 1sxj_D 29 EKYRPKNLDEVTAQDHAVTVLKKTLKS-----------ANL-PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELN 96 (353)
T ss_dssp HHTCCSSTTTCCSCCTTHHHHHHHTTC-----------TTC-CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEEC
T ss_pred HhcCCCCHHHhhCCHHHHHHHHHHHhc-----------CCC-CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEc
Confidence 345678999999999999988877643 112 34999999955555555544433211
Q ss_pred -----------------------------------cCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCc
Q 006411 471 -----------------------------------RQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEH 515 (646)
Q Consensus 471 -----------------------------------~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~ 515 (646)
..+.||||||+|.+..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~----------------------------- 147 (353)
T 1sxj_D 97 ASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA----------------------------- 147 (353)
T ss_dssp SSSCCCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH-----------------------------
T ss_pred cccccchHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCH-----------------------------
Confidence 1233666677666533
Q ss_pred hhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC----------------CCcHHHHHH
Q 006411 516 ESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS----------------GYSGSDMKN 579 (646)
Q Consensus 516 e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~----------------GySGADL~~ 579 (646)
...+.|+..|+.... .+.+|++||.+..+++++++|+. .+.++.|+. .++...+..
T Consensus 148 ----~~~~~Ll~~le~~~~---~~~~il~~~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~ 219 (353)
T 1sxj_D 148 ----DAQSALRRTMETYSG---VTRFCLICNYVTRIIDPLASQCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLER 219 (353)
T ss_dssp ----HHHHHHHHHHHHTTT---TEEEEEEESCGGGSCHHHHHHSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHH
T ss_pred ----HHHHHHHHHHHhcCC---CceEEEEeCchhhCcchhhccCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 234567777766533 56777889999999999999997 778887764 255555555
Q ss_pred HHHHHhhhHHHHHH---HhchhhhhhcccCCCCccHHHHHHHHhhcCC
Q 006411 580 LVKEASMGPLREAL---RQGIEITRLQKEDMQPVTLQDFENALPQVRA 624 (646)
Q Consensus 580 Lc~eAa~~Airr~l---~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrP 624 (646)
+++.+. .-+++++ ....... ........|+.+|+..++....+
T Consensus 220 l~~~~~-G~~r~~~~~l~~~~~~~-~~~~~~~~It~~~v~~~~~~~~~ 265 (353)
T 1sxj_D 220 ILDISA-GDLRRGITLLQSASKGA-QYLGDGKNITSTQVEELAGVVPH 265 (353)
T ss_dssp HHHHTS-SCHHHHHHHHHHTHHHH-HHHCSCCCCCHHHHHHHHTCCCS
T ss_pred HHHHcC-CCHHHHHHHHHHHHHhc-CCCccCccccHHHHHHHhCCCCH
Confidence 554432 2222221 1110000 00001115888998888775443
|
| >1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.57 E-value=6.6e-07 Score=89.76 Aligned_cols=119 Identities=24% Similarity=0.228 Sum_probs=83.2
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhh------------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASC------------ 470 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~------------ 470 (646)
.+..+.+|++++|.+++++.|...+.. +.+ ..+||||||+.++...++.+......
T Consensus 17 ~k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~-~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~ 84 (327)
T 1iqp_A 17 EKYRPQRLDDIVGQEHIVKRLKHYVKT-----------GSM-PHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNA 84 (327)
T ss_dssp HHTCCCSTTTCCSCHHHHHHHHHHHHH-----------TCC-CEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEET
T ss_pred hccCCCCHHHhhCCHHHHHHHHHHHHc-----------CCC-CeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeec
Confidence 456778999999999999999987754 122 24999999955555554444433210
Q ss_pred ------------------------cCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHH
Q 006411 471 ------------------------RQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFL 526 (646)
Q Consensus 471 ------------------------~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL 526 (646)
..+.||||||+|.+.. ...+.|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~---------------------------------~~~~~L~ 131 (327)
T 1iqp_A 85 SDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQ---------------------------------DAQQALR 131 (327)
T ss_dssp TCHHHHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH---------------------------------HHHHHHH
T ss_pred cccCchHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH---------------------------------HHHHHHH
Confidence 2356777777776532 2345666
Q ss_pred HHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 527 IEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 527 ~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
..|+... .++.+|++||.+..+++++++|+. .+.|++|+.
T Consensus 132 ~~le~~~---~~~~~i~~~~~~~~l~~~l~sr~~-~~~~~~l~~ 171 (327)
T 1iqp_A 132 RTMEMFS---SNVRFILSCNYSSKIIEPIQSRCA-IFRFRPLRD 171 (327)
T ss_dssp HHHHHTT---TTEEEEEEESCGGGSCHHHHHTEE-EEECCCCCH
T ss_pred HHHHhcC---CCCeEEEEeCCccccCHHHHhhCc-EEEecCCCH
Confidence 6666543 467888999999999999999987 678887753
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=98.56 E-value=7.2e-07 Score=91.91 Aligned_cols=117 Identities=15% Similarity=0.158 Sum_probs=78.7
Q ss_pred cccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhc------------------
Q 006411 410 WDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCR------------------ 471 (646)
Q Consensus 410 fdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~------------------ 471 (646)
.++++|.+..++.|.+.+...+. +..++.+||||||+.++...++.+...+...
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~--------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVK--------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHT--------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 38899999999999988765332 2345799999999555555555554432111
Q ss_pred ------------------------------------------CCeeeeehhhhHHhhhcccccccchhhhhhhhhhcccc
Q 006411 472 ------------------------------------------QPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQR 509 (646)
Q Consensus 472 ------------------------------------------aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R 509 (646)
.+.||||||+|.+.. ..
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~---------------------~~ 149 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVK---------------------RR 149 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHH---------------------ST
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhcc---------------------CC
Confidence 123777777777754 11
Q ss_pred CCCCCchhhHHH-HHHHHHHHcCCCCCCCcEEEEEecCCC---CcCCHHHHhccccEEEeCCCCC
Q 006411 510 KSDGEHESSRRL-KTQFLIEMEGFDSGSEQILLVGATNRP---QELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 510 ~s~~~~e~s~ri-lneLL~eLDGl~~~~~~VlVIaATNrP---d~LDpALlRRFDr~I~IplPd~ 570 (646)
. ..+ +..|+..+ .++.||+|||.+ +.+++++++||...|.|++|+.
T Consensus 150 ---~-----~~~~l~~l~~~~-------~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~ 199 (384)
T 2qby_B 150 ---G-----GDIVLYQLLRSD-------ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDA 199 (384)
T ss_dssp ---T-----SHHHHHHHHTSS-------SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCH
T ss_pred ---C-----CceeHHHHhcCC-------cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCH
Confidence 0 112 33333222 479999999998 7899999999988999999864
|
| >3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B* | Back alignment and structure |
|---|
Probab=98.54 E-value=7.4e-08 Score=82.77 Aligned_cols=56 Identities=21% Similarity=0.350 Sum_probs=37.9
Q ss_pred CCCCcHHHHHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCCCCCH-HHHHHHHHHH
Q 006411 569 SSGYSGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRASVSL-NELGIYEEWN 638 (646)
Q Consensus 569 d~GySGADL~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrPSvs~-~dl~~ye~w~ 638 (646)
+.|||||||.++|++|++.|+++. ...|+++||+.|++++.|++.. .....|.+|+
T Consensus 32 t~G~SGADl~~l~~eAa~~a~r~~--------------~~~i~~~df~~Al~~v~~~~~~~~~~~~y~~w~ 88 (88)
T 3vlf_B 32 CPNSTGAELRSVCTEAGMFAIRAR--------------RKVATEKDFLKAVDKVISGYKKFSSTSRYMQYN 88 (88)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHS--------------CSSBCHHHHHHHHHHHTC---------------
T ss_pred cCCCcHHHHHHHHHHHHHHHHHhc--------------cccCCHHHHHHHHHHHhcCcccccchhHHhccC
Confidence 459999999999999999999872 2569999999999999999865 4578899996
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.53 E-value=8.8e-08 Score=111.41 Aligned_cols=121 Identities=21% Similarity=0.400 Sum_probs=77.8
Q ss_pred CcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCC---------------------------------
Q 006411 407 HVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP--------------------------------- 453 (646)
Q Consensus 407 ~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPP--------------------------------- 453 (646)
+-+|++|+|-++.++.+.+.+.. ..+.++||+|||
T Consensus 166 ~~~ld~viGr~~~i~~l~~~l~~------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 233 (854)
T 1qvr_A 166 EGKLDPVIGRDEEIRRVIQILLR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQ 233 (854)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHHC------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEEC
T ss_pred cCCCcccCCcHHHHHHHHHHHhc------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEee
Confidence 46789999999888888776532 224679999999
Q ss_pred ----------CchHHHHHHHHHHHhhhc-CCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHH
Q 006411 454 ----------IGEGEKLVRALFGVASCR-QPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLK 522 (646)
Q Consensus 454 ----------vGesek~Vr~lF~~Ar~~-aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~ril 522 (646)
.|+.+..++.+|..+... .|+||||||||.|.+ .+...+. ..+.
T Consensus 234 ~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~---------------------~~~~~g~----~~~~ 288 (854)
T 1qvr_A 234 MGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVG---------------------AGKAEGA----VDAG 288 (854)
T ss_dssp C-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-----------------------------------------
T ss_pred hHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhc---------------------cCCccch----HHHH
Confidence 233455677888888765 799999999999986 2222111 1223
Q ss_pred HHHHHHHcCCCCCCCcEEEEEecCCCC----cCCHHHHhccccEEEeCCCCC
Q 006411 523 TQFLIEMEGFDSGSEQILLVGATNRPQ----ELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 523 neLL~eLDGl~~~~~~VlVIaATNrPd----~LDpALlRRFDr~I~IplPd~ 570 (646)
+.|...++ ...+.+|+|||.++ .+|++++|||+. |+|+.|+.
T Consensus 289 ~~L~~~l~-----~~~i~~I~at~~~~~~~~~~d~aL~rRf~~-i~l~~p~~ 334 (854)
T 1qvr_A 289 NMLKPALA-----RGELRLIGATTLDEYREIEKDPALERRFQP-VYVDEPTV 334 (854)
T ss_dssp ---HHHHH-----TTCCCEEEEECHHHHHHHTTCTTTCSCCCC-EEECCCCH
T ss_pred HHHHHHHh-----CCCeEEEEecCchHHhhhccCHHHHhCCce-EEeCCCCH
Confidence 33333342 24678999999875 589999999996 89999975
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.3e-06 Score=89.03 Aligned_cols=126 Identities=15% Similarity=0.227 Sum_probs=85.1
Q ss_pred CCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHH-------------------
Q 006411 406 PHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFG------------------- 466 (646)
Q Consensus 406 p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~------------------- 466 (646)
|....++++|-+...+.|.+.+...+. ...+..++|+|||+.++...++.+..
T Consensus 15 ~~~~p~~~~gr~~e~~~l~~~l~~~~~--------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~ 86 (386)
T 2qby_A 15 PDYIPDELPHREDQIRKIASILAPLYR--------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ 86 (386)
T ss_dssp SSCCCSCCTTCHHHHHHHHHSSGGGGG--------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH
T ss_pred CccCCCCCCChHHHHHHHHHHHHHHHc--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC
Confidence 345568999999999988876644221 23457899999994444444333332
Q ss_pred -----------------------------------Hhhhc-CCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccC
Q 006411 467 -----------------------------------VASCR-QPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRK 510 (646)
Q Consensus 467 -----------------------------------~Ar~~-aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~ 510 (646)
.+... .|+||||||+|.+.. ...
T Consensus 87 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~---------------------~~~ 145 (386)
T 2qby_A 87 IDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVK---------------------KYN 145 (386)
T ss_dssp HCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHH---------------------SSC
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhc---------------------cCc
Confidence 22222 288999999998875 110
Q ss_pred CCCCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCC---CcCCHHHHhccc-cEEEeCCCCC
Q 006411 511 SDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRP---QELDEAARRRLT-KRLYIPLPSS 570 (646)
Q Consensus 511 s~~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrP---d~LDpALlRRFD-r~I~IplPd~ 570 (646)
..++..|+..++.+. ..++.+|++||.+ ..+++++++||. +.|.+++++.
T Consensus 146 --------~~~l~~l~~~~~~~~--~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~ 199 (386)
T 2qby_A 146 --------DDILYKLSRINSEVN--KSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNA 199 (386)
T ss_dssp --------STHHHHHHHHHHSCC--C--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCH
T ss_pred --------CHHHHHHhhchhhcC--CCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCH
Confidence 125677777787762 3578999999988 578999999886 4899998864
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=5.9e-07 Score=97.20 Aligned_cols=124 Identities=13% Similarity=0.293 Sum_probs=75.3
Q ss_pred CCCCccccccc-C--hHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHh------------
Q 006411 404 RDPHVRWDDIA-G--LEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVA------------ 468 (646)
Q Consensus 404 ~~p~VsfdDIg-G--le~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~A------------ 468 (646)
..|..+|++++ | -..+...+...+..| +. +..+||||||+.++...++.+....
T Consensus 98 l~~~~tfd~fv~g~~n~~a~~~~~~~a~~~----------~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v 166 (440)
T 2z4s_A 98 LNPDYTFENFVVGPGNSFAYHAALEVAKHP----------GR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYI 166 (440)
T ss_dssp CCTTCSGGGCCCCTTTHHHHHHHHHHHHST----------TS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEE
T ss_pred CCCCCChhhcCCCCchHHHHHHHHHHHhCC----------CC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEe
Confidence 45678999987 5 333445555444332 11 4689999999555544444443322
Q ss_pred ------------------------hhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHH
Q 006411 469 ------------------------SCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQ 524 (646)
Q Consensus 469 ------------------------r~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilne 524 (646)
....|.||||||||.+.. ++ .....
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~---------------------~~----------~~q~~ 215 (440)
T 2z4s_A 167 TSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIG---------------------KT----------GVQTE 215 (440)
T ss_dssp EHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSS---------------------CH----------HHHHH
T ss_pred eHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccC---------------------Ch----------HHHHH
Confidence 111688999999998864 11 11233
Q ss_pred HHHHHcCCCCCCCcEEEEEecCCCCc---CCHHHHhccc--cEEEeCCCCC
Q 006411 525 FLIEMEGFDSGSEQILLVGATNRPQE---LDEAARRRLT--KRLYIPLPSS 570 (646)
Q Consensus 525 LL~eLDGl~~~~~~VlVIaATNrPd~---LDpALlRRFD--r~I~IplPd~ 570 (646)
|+..++.+.. .+..+||+|++.|.. +++++++||. ..+.+++|+.
T Consensus 216 l~~~l~~l~~-~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~ 265 (440)
T 2z4s_A 216 LFHTFNELHD-SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDE 265 (440)
T ss_dssp HHHHHHHHHT-TTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCH
T ss_pred HHHHHHHHHH-CCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCH
Confidence 4444433323 234556655555665 8999999997 7889999975
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.50 E-value=6e-07 Score=102.85 Aligned_cols=136 Identities=16% Similarity=0.163 Sum_probs=91.4
Q ss_pred ccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHh----------------------
Q 006411 411 DDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVA---------------------- 468 (646)
Q Consensus 411 dDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~A---------------------- 468 (646)
++|+|.+.+++.|.+.+....... .....|...+||+|||+.+++...+.+-...
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~---~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~ 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGL---KDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTC---SCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC
T ss_pred CcCcChHHHHHHHHHHHHHHHccc---CCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccc
Confidence 468899999999988887632110 0011233369999999666655555554432
Q ss_pred --------hhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCC-------
Q 006411 469 --------SCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFD------- 533 (646)
Q Consensus 469 --------r~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~------- 533 (646)
+...++||||||||.+-. .+.+.||..||.-.
T Consensus 568 ~~~l~~~~~~~~~~vl~lDEi~~~~~---------------------------------~~~~~Ll~~le~g~~~~~~g~ 614 (758)
T 3pxi_A 568 GGQLTEKVRRKPYSVVLLDAIEKAHP---------------------------------DVFNILLQVLEDGRLTDSKGR 614 (758)
T ss_dssp ---CHHHHHHCSSSEEEEECGGGSCH---------------------------------HHHHHHHHHHHHSBCC-----
T ss_pred cchhhHHHHhCCCeEEEEeCccccCH---------------------------------HHHHHHHHHhccCeEEcCCCC
Confidence 334568999999997632 35677777777521
Q ss_pred -CCCCcEEEEEecCCCCc------------CCHHHHhccccEEEeCCCCCCCcHHHHHHHHHHHhh
Q 006411 534 -SGSEQILLVGATNRPQE------------LDEAARRRLTKRLYIPLPSSGYSGSDMKNLVKEASM 586 (646)
Q Consensus 534 -~~~~~VlVIaATNrPd~------------LDpALlRRFDr~I~IplPd~GySGADL~~Lc~eAa~ 586 (646)
....+++||+|||.+.. ++|+++.|||..|.|++|+. .|+..+++....
T Consensus 615 ~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~----~~~~~i~~~~l~ 676 (758)
T 3pxi_A 615 TVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEK----KHLTEIVSLMSD 676 (758)
T ss_dssp CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CH----HHHHHHHHHHHH
T ss_pred EeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCH----HHHHHHHHHHHH
Confidence 01246899999998765 89999999999999999864 777777765543
|
| >3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B* | Back alignment and structure |
|---|
Probab=98.48 E-value=6e-08 Score=81.74 Aligned_cols=52 Identities=29% Similarity=0.394 Sum_probs=37.7
Q ss_pred CCCCcHHHHHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCCCCCHHHHHHHH
Q 006411 569 SSGYSGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRASVSLNELGIYE 635 (646)
Q Consensus 569 d~GySGADL~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrPSvs~~dl~~ye 635 (646)
+.|||||||.++|++|++.|+++. ..+|+++||+.|+.+++|+++ ++++.|+
T Consensus 32 t~G~SGADi~~l~~eA~~~a~~~~--------------~~~i~~~df~~Al~~~~ps~~-~~l~~y~ 83 (83)
T 3aji_B 32 PDKISGADINSICQESGMLAVREN--------------RYIVLAKDFEKAYKTVIKKDE-QEHEFYK 83 (83)
T ss_dssp SCCCCHHHHHHHHHHHHHGGGTSC--------------CSSBCHHHHHHHHHHHCC-----------
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhc--------------cCCcCHHHHHHHHHHHccCch-HHHHhcC
Confidence 459999999999999999998752 367999999999999999999 8887774
|
| >1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* | Back alignment and structure |
|---|
Probab=98.47 E-value=7.6e-07 Score=101.70 Aligned_cols=132 Identities=18% Similarity=0.188 Sum_probs=85.9
Q ss_pred cccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHH---------------------------
Q 006411 412 DIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRAL--------------------------- 464 (646)
Q Consensus 412 DIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~l--------------------------- 464 (646)
+|.|.+++++.|...+...... ......|...+||+|||+.++....+.+
T Consensus 459 ~v~g~~~~~~~l~~~i~~~~~g---~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g 535 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMARAG---LGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIG 535 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHHTT---CSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCC
T ss_pred hccCHHHHHHHHHHHHHHHhcc---cCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcC
Confidence 4677788888777766542110 0011234457999999944444433333
Q ss_pred --------------HHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHc
Q 006411 465 --------------FGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEME 530 (646)
Q Consensus 465 --------------F~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLD 530 (646)
+...+...++||||||||.+-. .+.+.|+..||
T Consensus 536 ~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~~---------------------------------~~~~~Ll~~le 582 (758)
T 1r6b_X 536 APPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP---------------------------------DVFNILLQVMD 582 (758)
T ss_dssp CCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSCH---------------------------------HHHHHHHHHHH
T ss_pred CCCCCcCccccchHHHHHHhCCCcEEEEeCccccCH---------------------------------HHHHHHHHHhc
Confidence 2333344568999999997632 36778888887
Q ss_pred CCCC--------CCCcEEEEEecCCCC-------------------------cCCHHHHhccccEEEeCCCCCCCcHHHH
Q 006411 531 GFDS--------GSEQILLVGATNRPQ-------------------------ELDEAARRRLTKRLYIPLPSSGYSGSDM 577 (646)
Q Consensus 531 Gl~~--------~~~~VlVIaATNrPd-------------------------~LDpALlRRFDr~I~IplPd~GySGADL 577 (646)
.-.- .-.+++||+|||.+. .++|+++.|||..|.|++|+. .|+
T Consensus 583 ~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~----~~~ 658 (758)
T 1r6b_X 583 NGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLST----DVI 658 (758)
T ss_dssp HSEEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCH----HHH
T ss_pred CcEEEcCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCH----HHH
Confidence 4210 014689999999865 789999999999999999875 555
Q ss_pred HHHHHH
Q 006411 578 KNLVKE 583 (646)
Q Consensus 578 ~~Lc~e 583 (646)
..+++.
T Consensus 659 ~~i~~~ 664 (758)
T 1r6b_X 659 HQVVDK 664 (758)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
|
| >1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* | Back alignment and structure |
|---|
Probab=98.46 E-value=1.9e-06 Score=88.42 Aligned_cols=119 Identities=19% Similarity=0.199 Sum_probs=84.2
Q ss_pred CCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhc------------
Q 006411 404 RDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCR------------ 471 (646)
Q Consensus 404 ~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~------------ 471 (646)
+..+.+|++++|.+.+++.|...+.. +..+..+||||||+.++...++.+.....+.
T Consensus 9 k~rp~~~~~~vg~~~~~~~L~~~l~~-----------~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 77 (373)
T 1jr3_A 9 KWRPQTFADVVGQEHVLTALANGLSL-----------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 (373)
T ss_dssp HTCCCSTTTSCSCHHHHHHHHHHHHH-----------TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSH
T ss_pred hhCCCchhhccCcHHHHHHHHHHHHh-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccH
Confidence 45567899999999999999988753 2234679999999666666666554443221
Q ss_pred -----------------------------------------CCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccC
Q 006411 472 -----------------------------------------QPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRK 510 (646)
Q Consensus 472 -----------------------------------------aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~ 510 (646)
.+.||||||+|.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~------------------------- 132 (373)
T 1jr3_A 78 NCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS------------------------- 132 (373)
T ss_dssp HHHHHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSC-------------------------
T ss_pred HHHHHhccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhc-------------------------
Confidence 13455555555442
Q ss_pred CCCCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 511 SDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 511 s~~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
....+.|+..++... ..+++|++|+.+..+++++++|+ ..+.++.|+.
T Consensus 133 --------~~~~~~Ll~~le~~~---~~~~~Il~~~~~~~l~~~l~sr~-~~i~~~~l~~ 180 (373)
T 1jr3_A 133 --------RHSFNALLKTLEEPP---EHVKFLLATTDPQKLPVTILSRC-LQFHLKALDV 180 (373)
T ss_dssp --------HHHHHHHHHHHHSCC---SSEEEEEEESCGGGSCHHHHTTS-EEEECCCCCH
T ss_pred --------HHHHHHHHHHHhcCC---CceEEEEEeCChHhCcHHHHhhe-eEeeCCCCCH
Confidence 234577788887643 47889999999999999999998 6788888764
|
| >1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.46 E-value=1.5e-06 Score=87.01 Aligned_cols=118 Identities=15% Similarity=0.112 Sum_probs=80.7
Q ss_pred CCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHH----------------
Q 006411 404 RDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGV---------------- 467 (646)
Q Consensus 404 ~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~---------------- 467 (646)
+..+.+|++++|.+.+++.|.+.+.. +.++. +||||||+.+....++.+.+.
T Consensus 14 ~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 81 (323)
T 1sxj_B 14 KYRPQVLSDIVGNKETIDRLQQIAKD-----------GNMPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNAS 81 (323)
T ss_dssp HTCCSSGGGCCSCTHHHHHHHHHHHS-----------CCCCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTT
T ss_pred hcCCCCHHHHHCCHHHHHHHHHHHHc-----------CCCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCc
Confidence 45567899999999999999888643 22334 999999944444444433332
Q ss_pred --------------hh-------hcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHH
Q 006411 468 --------------AS-------CRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFL 526 (646)
Q Consensus 468 --------------Ar-------~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL 526 (646)
+. ...+.||||||+|.+.. ...+.|+
T Consensus 82 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~---------------------------------~~~~~L~ 128 (323)
T 1sxj_B 82 DDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA---------------------------------GAQQALR 128 (323)
T ss_dssp SCCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH---------------------------------HHHHTTH
T ss_pred cccChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH---------------------------------HHHHHHH
Confidence 21 11256777777776532 1244566
Q ss_pred HHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 527 IEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 527 ~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
..++... .++.+|++||.+..+++++++|+. .+.++.|+.
T Consensus 129 ~~le~~~---~~~~~il~~~~~~~l~~~l~sr~~-~i~~~~~~~ 168 (323)
T 1sxj_B 129 RTMELYS---NSTRFAFACNQSNKIIEPLQSQCA-ILRYSKLSD 168 (323)
T ss_dssp HHHHHTT---TTEEEEEEESCGGGSCHHHHTTSE-EEECCCCCH
T ss_pred HHHhccC---CCceEEEEeCChhhchhHHHhhce-EEeecCCCH
Confidence 6665532 467888899999999999999986 788988875
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=1.3e-05 Score=82.95 Aligned_cols=195 Identities=17% Similarity=0.161 Sum_probs=112.5
Q ss_pred CCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHh-----------------
Q 006411 406 PHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVA----------------- 468 (646)
Q Consensus 406 p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~A----------------- 468 (646)
..-+|+++.|.+.+++.|...+..-.. .+.++..++|||||+.++...++.+....
T Consensus 20 r~~~l~~~~g~~~~~~~l~~~i~~~~~-------~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~ 92 (334)
T 1in4_A 20 RPKSLDEFIGQENVKKKLSLALEAAKM-------RGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGD 92 (334)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHHHHH-------HTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHH
T ss_pred CCccHHHccCcHHHHHHHHHHHHHHHh-------cCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHH
Confidence 345889999999888888776654211 12355789999999666666666655443
Q ss_pred ------hhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCC---------
Q 006411 469 ------SCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFD--------- 533 (646)
Q Consensus 469 ------r~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~--------- 533 (646)
....+.|+||||++.+... +...|+..|....
T Consensus 93 l~~~~~~~~~~~v~~iDE~~~l~~~---------------------------------~~e~L~~~~~~~~~~i~~~~~~ 139 (334)
T 1in4_A 93 MAAILTSLERGDVLFIDEIHRLNKA---------------------------------VEELLYSAIEDFQIDIMIGKGP 139 (334)
T ss_dssp HHHHHHHCCTTCEEEEETGGGCCHH---------------------------------HHHHHHHHHHTSCCCC------
T ss_pred HHHHHHHccCCCEEEEcchhhcCHH---------------------------------HHHHHHHHHHhcccceeeccCc
Confidence 0124679999999987531 0111111111110
Q ss_pred ------CCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC----------------CCcHHHHHHHHHHHhhh--HH
Q 006411 534 ------SGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS----------------GYSGSDMKNLVKEASMG--PL 589 (646)
Q Consensus 534 ------~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~----------------GySGADL~~Lc~eAa~~--Ai 589 (646)
..-..+.++++|+++..|++.+++||...+.+++|+. .++...+..+++.+.-. .+
T Consensus 140 ~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~a 219 (334)
T 1in4_A 140 SAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIA 219 (334)
T ss_dssp ---------CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHH
T ss_pred ccccccccCCCeEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChHHH
Confidence 0013467788999999999999999988888998864 12222233332221100 00
Q ss_pred HHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCC---CCCHHHHHHHHHHHHHhC
Q 006411 590 REALRQGIEITRLQKEDMQPVTLQDFENALPQVRA---SVSLNELGIYEEWNKQFG 642 (646)
Q Consensus 590 rr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrP---Svs~~dl~~ye~w~k~fg 642 (646)
...+...... ........|+.+++..|+..+.. ..+..+...+..+.+.|+
T Consensus 220 ~~ll~~~~~~--a~~~~~~~It~~~v~~al~~~~~~~~~l~~~~~~~l~~~~~~~~ 273 (334)
T 1in4_A 220 IRLTKRVRDM--LTVVKADRINTDIVLKTMEVLNIDDEGLDEFDRKILKTIIEIYR 273 (334)
T ss_dssp HHHHHHHHHH--HHHHTCSSBCHHHHHHHHHHHTCCTTCCCHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHH--HHHcCCCCcCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHhC
Confidence 0011100000 01112356899999999988753 233455566777777774
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.44 E-value=2.5e-07 Score=106.04 Aligned_cols=110 Identities=19% Similarity=0.257 Sum_probs=76.7
Q ss_pred CCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCc------------------------------
Q 006411 406 PHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIG------------------------------ 455 (646)
Q Consensus 406 p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvG------------------------------ 455 (646)
..-++++|+|.+..++.|.+.+.. ....++||||||+.
T Consensus 175 ~~~~ld~iiG~~~~i~~l~~~l~~------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~ 242 (758)
T 3pxi_A 175 KEDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (758)
T ss_dssp TSSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred hhCCCCCccCchHHHHHHHHHHhC------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEe
Confidence 445789999999999998887643 12467999999922
Q ss_pred --------hHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHH
Q 006411 456 --------EGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLI 527 (646)
Q Consensus 456 --------esek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~ 527 (646)
+.+..++.+|+.+....|+||||| .. . ...+.|+.
T Consensus 243 ~~g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-----~~----------------------~----------~~~~~L~~ 285 (758)
T 3pxi_A 243 DMGTKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA----------------------I----------DASNILKP 285 (758)
T ss_dssp ----------CTTHHHHHHHHHTCCCCEEEEC-----C----------------------------------------CC
T ss_pred cccccccchHHHHHHHHHHHHHhcCCEEEEEc-----Cc----------------------h----------hHHHHHHH
Confidence 223356777777777788888888 21 0 01122222
Q ss_pred HHcCCCCCCCcEEEEEecCCCC-----cCCHHHHhccccEEEeCCCCC
Q 006411 528 EMEGFDSGSEQILLVGATNRPQ-----ELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 528 eLDGl~~~~~~VlVIaATNrPd-----~LDpALlRRFDr~I~IplPd~ 570 (646)
.|+ ...|.||+|||.++ .+|++++||| ..|.|+.|+.
T Consensus 286 ~l~-----~~~v~~I~at~~~~~~~~~~~d~al~rRf-~~i~v~~p~~ 327 (758)
T 3pxi_A 286 SLA-----RGELQCIGATTLDEYRKYIEKDAALERRF-QPIQVDQPSV 327 (758)
T ss_dssp CTT-----SSSCEEEEECCTTTTHHHHTTCSHHHHSE-EEEECCCCCH
T ss_pred HHh-----cCCEEEEeCCChHHHHHHhhccHHHHhhC-cEEEeCCCCH
Confidence 222 34689999999998 7999999999 4599999974
|
| >3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.42 E-value=4.3e-07 Score=98.91 Aligned_cols=111 Identities=17% Similarity=0.239 Sum_probs=74.1
Q ss_pred CCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHH-------------------------
Q 006411 405 DPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEK------------------------- 459 (646)
Q Consensus 405 ~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek------------------------- 459 (646)
..+-++++|+|-+..++.|.+.+.. ....++||+|||+.++..
T Consensus 174 ~r~~~ld~iiGr~~~i~~l~~~l~r------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 241 (468)
T 3pxg_A 174 AKEDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT 241 (468)
T ss_dssp TTSSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC
T ss_pred HhcCCCCCccCcHHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE
Confidence 3456789999999999988877643 124678999999333333
Q ss_pred -------------HHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHH
Q 006411 460 -------------LVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFL 526 (646)
Q Consensus 460 -------------~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL 526 (646)
.++.+|+.+....|+||||| +. . ...+.|+
T Consensus 242 l~~~~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~~----------------------~----------~a~~~L~ 284 (468)
T 3pxg_A 242 LDMGTKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA----------------------I----------DASNILK 284 (468)
T ss_dssp C----------CTTHHHHHHHHHTCCCCEEEEC-----C----------------------------------------C
T ss_pred eeCCccccchHHHHHHHHHHHHHhcCCeEEEEe-----Cc----------------------h----------hHHHHHH
Confidence 34455555655566777776 11 0 0112222
Q ss_pred HHHcCCCCCCCcEEEEEecCCCC-----cCCHHHHhccccEEEeCCCCC
Q 006411 527 IEMEGFDSGSEQILLVGATNRPQ-----ELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 527 ~eLDGl~~~~~~VlVIaATNrPd-----~LDpALlRRFDr~I~IplPd~ 570 (646)
..| . ...+.||+|||.+. .+|++++|||.. |.|+.|+.
T Consensus 285 ~~L----~-~g~v~vI~at~~~e~~~~~~~~~al~~Rf~~-i~v~~p~~ 327 (468)
T 3pxg_A 285 PSL----A-RGELQCIGATTLDEYRKYIEKDAALERRFQP-IQVDQPSV 327 (468)
T ss_dssp CCT----T-SSSCEEEEECCTTTTHHHHTTCSHHHHSEEE-EECCCCCH
T ss_pred Hhh----c-CCCEEEEecCCHHHHHHHhhcCHHHHHhCcc-ceeCCCCH
Confidence 222 1 34699999999998 799999999985 99999974
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.35 E-value=4.8e-06 Score=85.55 Aligned_cols=156 Identities=12% Similarity=0.122 Sum_probs=83.4
Q ss_pred CcccccccChHHHHHHHHHHHHhhccCccccccCCCCCc--cccccCCCCchHHHHHHHHHHHhhhc-CCeeeeehhhh-
Q 006411 407 HVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGK--GLLLFGPPIGEGEKLVRALFGVASCR-QPAVIFVDEID- 482 (646)
Q Consensus 407 ~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~Ppr--GVLLyGPPvGesek~Vr~lF~~Ar~~-aPsIIFIDEID- 482 (646)
...++++.|-+..++.|.+.+...+.. ..+. .++|+|||+.++...++.+....... ...+++++--+
T Consensus 13 ~~~p~~l~gr~~~~~~l~~~l~~~~~~--------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~ 84 (389)
T 1fnn_A 13 SYVPKRLPHREQQLQQLDILLGNWLRN--------PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIY 84 (389)
T ss_dssp TCCCSCCTTCHHHHHHHHHHHHHHHHS--------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTC
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHHcC--------CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccC
Confidence 344589999999999998887653321 1223 89999999777777777777665443 23344443110
Q ss_pred ----HHhhhccccccc-------chhhhhhh-h-hhccccCC-----CCCchhhHHHHHHHHHHHcCCCC-CCCcEEEEE
Q 006411 483 ----SLLSQMLPYMHV-------HHIKLFCL-K-RFYFQRKS-----DGEHESSRRLKTQFLIEMEGFDS-GSEQILLVG 543 (646)
Q Consensus 483 ----sL~~k~~~~~~~-------~~~~~~~~-k-r~~~~R~s-----~~~~e~s~rilneLL~eLDGl~~-~~~~VlVIa 543 (646)
.++......++. ....++.. . ........ +.-+.....++..|+..++.+.. ...++.||+
T Consensus 85 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~ 164 (389)
T 1fnn_A 85 RNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVI 164 (389)
T ss_dssp CSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEE
T ss_pred CCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEE
Confidence 111000000000 00000000 0 00000000 00011123456666666654431 014789999
Q ss_pred ecCCC---CcCCHHHHhcccc-EEEeCCCCC
Q 006411 544 ATNRP---QELDEAARRRLTK-RLYIPLPSS 570 (646)
Q Consensus 544 ATNrP---d~LDpALlRRFDr-~I~IplPd~ 570 (646)
+||.+ +.+++.+++||.. .|.+++++.
T Consensus 165 ~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~ 195 (389)
T 1fnn_A 165 VGHNDAVLNNLDPSTRGIMGKYVIRFSPYTK 195 (389)
T ss_dssp EESSTHHHHTSCHHHHHHHTTCEEECCCCBH
T ss_pred EECCchHHHHhCHHhhhcCCCceEEeCCCCH
Confidence 99998 7899999999886 788888764
|
| >2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B | Back alignment and structure |
|---|
Probab=98.25 E-value=6.7e-07 Score=75.54 Aligned_cols=53 Identities=17% Similarity=0.381 Sum_probs=36.1
Q ss_pred CCCCcHHHHHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhc-CCCCCHHHHHHHH
Q 006411 569 SSGYSGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQV-RASVSLNELGIYE 635 (646)
Q Consensus 569 d~GySGADL~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kv-rPSvs~~dl~~ye 635 (646)
+.|||||||.++|++|++.|+++. ...|+++||+.|+.++ .|+++.++++.|.
T Consensus 29 t~G~SGADi~~l~~eAa~~ai~~~--------------~~~i~~~df~~Al~~v~~~~~~~~~~~~y~ 82 (82)
T 2dzn_B 29 NDSLSGAVIAAIMQEAGLRAVRKN--------------RYVILQSDLEEAYATQVKTDNTVDKFDFYK 82 (82)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHTT--------------CSEECHHHHHHHHHTTCC------------
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhc--------------cCCcCHHHHHHHHHHHHcCcCChHHHHhhC
Confidence 349999999999999999999861 2569999999999998 5888888887763
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.23 E-value=2.2e-05 Score=80.99 Aligned_cols=117 Identities=18% Similarity=0.185 Sum_probs=79.9
Q ss_pred CCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhh-------------
Q 006411 404 RDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASC------------- 470 (646)
Q Consensus 404 ~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~------------- 470 (646)
+..+.+|+++.|.+.+++.|...+.. +..+. +||||||+.++...++.+-.....
T Consensus 18 k~rp~~~~~~~g~~~~~~~L~~~i~~-----------g~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~ 85 (340)
T 1sxj_C 18 KYRPETLDEVYGQNEVITTVRKFVDE-----------GKLPH-LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNAS 85 (340)
T ss_dssp HTCCSSGGGCCSCHHHHHHHHHHHHT-----------TCCCC-EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTT
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHhc-----------CCCce-EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCc
Confidence 45677899999999999998887753 22233 999999955555555444332210
Q ss_pred -----------------------cCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHH
Q 006411 471 -----------------------RQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLI 527 (646)
Q Consensus 471 -----------------------~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~ 527 (646)
..+.|++|||+|.+.. ...+.|+.
T Consensus 86 ~~~~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~---------------------------------~~~~~L~~ 132 (340)
T 1sxj_C 86 DDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN---------------------------------AAQNALRR 132 (340)
T ss_dssp SCCSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH---------------------------------HHHHHHHH
T ss_pred ccccHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCH---------------------------------HHHHHHHH
Confidence 1256777888776632 12456666
Q ss_pred HHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCC
Q 006411 528 EMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPS 569 (646)
Q Consensus 528 eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd 569 (646)
.|+... ..+.+|++||.+..+.+++++|+. .+.++.++
T Consensus 133 ~le~~~---~~~~~il~~n~~~~i~~~i~sR~~-~~~~~~l~ 170 (340)
T 1sxj_C 133 VIERYT---KNTRFCVLANYAHKLTPALLSQCT-RFRFQPLP 170 (340)
T ss_dssp HHHHTT---TTEEEEEEESCGGGSCHHHHTTSE-EEECCCCC
T ss_pred HHhcCC---CCeEEEEEecCccccchhHHhhce-eEeccCCC
Confidence 676543 356778889999999999999987 56776654
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=9.3e-06 Score=82.89 Aligned_cols=123 Identities=16% Similarity=0.227 Sum_probs=76.8
Q ss_pred CCCccccccc-C--hHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhh------------
Q 006411 405 DPHVRWDDIA-G--LEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVAS------------ 469 (646)
Q Consensus 405 ~p~VsfdDIg-G--le~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar------------ 469 (646)
.|..+|++++ | ...+...++..+..|- ..+.++||||||+.++...++.+...+.
T Consensus 5 ~~~~~f~~fv~g~~~~~a~~~~~~~~~~~~----------~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 5 NPKYTLENFIVGEGNRLAYEVVKEALENLG----------SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp CTTCCSSSCCCCTTTHHHHHHHHHHHHTTT----------TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCCcccCCCCCcHHHHHHHHHHHHhCcC----------CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 5678899997 4 4455566666555431 2357899999995555555555443321
Q ss_pred ---------------------hcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHH
Q 006411 470 ---------------------CRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIE 528 (646)
Q Consensus 470 ---------------------~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~e 528 (646)
...+.||||||||.+.. .+ .....|+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l~~---------------------~~----------~~~~~l~~~ 123 (324)
T 1l8q_A 75 DFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSG---------------------KE----------RTQIEFFHI 123 (324)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGTT---------------------CH----------HHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHhcCCCEEEEcCcccccC---------------------Ch----------HHHHHHHHH
Confidence 11378999999998754 11 112233333
Q ss_pred HcCCCCCCCcEEEEEecCCCC---cCCHHHHhccc--cEEEeCCCCC
Q 006411 529 MEGFDSGSEQILLVGATNRPQ---ELDEAARRRLT--KRLYIPLPSS 570 (646)
Q Consensus 529 LDGl~~~~~~VlVIaATNrPd---~LDpALlRRFD--r~I~IplPd~ 570 (646)
++.+.. ...++||++++.|. .+++++++||+ ..+.+++ +.
T Consensus 124 l~~~~~-~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~ 168 (324)
T 1l8q_A 124 FNTLYL-LEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DN 168 (324)
T ss_dssp HHHHHH-TTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CH
T ss_pred HHHHHH-CCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CH
Confidence 333222 23467778887777 68999999997 5677777 53
|
| >3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.18 E-value=1e-05 Score=89.45 Aligned_cols=113 Identities=22% Similarity=0.239 Sum_probs=72.9
Q ss_pred ccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhh--------------------
Q 006411 411 DDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASC-------------------- 470 (646)
Q Consensus 411 dDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~-------------------- 470 (646)
..|.|.+++++.+...+.. ...|||+|||+.++...++.+-..+..
T Consensus 22 ~~ivGq~~~i~~l~~al~~--------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~ 87 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALS--------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 87 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHH--------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCC
T ss_pred hhhHHHHHHHHHHHHHHhc--------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCc
Confidence 4688999998887666543 358999999955444444444322210
Q ss_pred -----------------c---CCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHc
Q 006411 471 -----------------R---QPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEME 530 (646)
Q Consensus 471 -----------------~---aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLD 530 (646)
. .++|||||||+.+- ..+.+.|+..|+
T Consensus 88 ~~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~~---------------------------------~~~q~~LL~~le 134 (500)
T 3nbx_X 88 LSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKAG---------------------------------PAILNTLLTAIN 134 (500)
T ss_dssp BC----------CBCCTTSGGGCSEEEEESGGGCC---------------------------------HHHHHHHHHHHH
T ss_pred ccHHHHhhchhHHhhhccCCCcceeeeHHhHhhhc---------------------------------HHHHHHHHHHHH
Confidence 0 34577888876442 235677777775
Q ss_pred C-------CCCCCCcEEEEEecCCCCc---CCHHHHhccccEEEeCCCCC
Q 006411 531 G-------FDSGSEQILLVGATNRPQE---LDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 531 G-------l~~~~~~VlVIaATNrPd~---LDpALlRRFDr~I~IplPd~ 570 (646)
. .....+..++|+|||.+.. +.+|+++||..+|++|.|+.
T Consensus 135 e~~v~i~G~~~~~~~~~iI~ATN~lpe~~~~~~aLldRF~~~i~v~~p~~ 184 (500)
T 3nbx_X 135 ERQFRNGAHVEKIPMRLLVAASNELPEADSSLEALYDRMLIRLWLDKVQD 184 (500)
T ss_dssp SSEEECSSSEEECCCCEEEEEESSCCCTTCTTHHHHTTCCEEEECCSCCC
T ss_pred HHhccCCCCcCCcchhhhhhccccCCCccccHHHHHHHHHHHHHHHHhhh
Confidence 2 2111122356788886433 55799999999999999976
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.17 E-value=4.7e-06 Score=87.34 Aligned_cols=92 Identities=5% Similarity=0.121 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHh--hhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCC
Q 006411 457 GEKLVRALFGVA--SCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDS 534 (646)
Q Consensus 457 sek~Vr~lF~~A--r~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~ 534 (646)
....++.+|..+ ....++||||||||.|.. +.++..|+.... ..
T Consensus 115 ~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~--------------------------------q~~L~~l~~~~~-~~- 160 (318)
T 3te6_A 115 SLEALNFYITNVPKAKKRKTLILIQNPENLLS--------------------------------EKILQYFEKWIS-SK- 160 (318)
T ss_dssp CHHHHHHHHHHSCGGGSCEEEEEEECCSSSCC--------------------------------THHHHHHHHHHH-CS-
T ss_pred HHHHHHHHHHHhhhccCCceEEEEecHHHhhc--------------------------------chHHHHHHhccc-cc-
Confidence 445566667664 345678999999997732 235566665433 22
Q ss_pred CCCcEEEEEecCCCCcCC----HHHHhccc-cEEEeCCCCCCCcHHHHHHHHHHHhhh
Q 006411 535 GSEQILLVGATNRPQELD----EAARRRLT-KRLYIPLPSSGYSGSDMKNLVKEASMG 587 (646)
Q Consensus 535 ~~~~VlVIaATNrPd~LD----pALlRRFD-r~I~IplPd~GySGADL~~Lc~eAa~~ 587 (646)
..+++||+++|..+..+ +++++||. .+|.|++ |+..+|..+++..+..
T Consensus 161 -~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~p----Yt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 161 -NSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNK----VDKNELQQMIITRLKS 213 (318)
T ss_dssp -SCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCC----CCHHHHHHHHHHHHHH
T ss_pred -CCcEEEEEEecCcccchhhcchhhhccCCceEEEeCC----CCHHHHHHHHHHHHHh
Confidence 35799999999987644 44566997 5777765 7889999999877643
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.13 E-value=7.9e-06 Score=83.67 Aligned_cols=46 Identities=15% Similarity=0.210 Sum_probs=36.9
Q ss_pred HHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 521 LKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 521 ilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
..+.|+..|+.... ++.+|.+||.++.+.+++++|+ .++.|++|+.
T Consensus 150 ~~~~L~~~le~~~~---~~~~Il~t~~~~~l~~~l~sR~-~~~~~~~~~~ 195 (354)
T 1sxj_E 150 AQAALRRTMEKYSK---NIRLIMVCDSMSPIIAPIKSQC-LLIRCPAPSD 195 (354)
T ss_dssp HHHHHHHHHHHSTT---TEEEEEEESCSCSSCHHHHTTS-EEEECCCCCH
T ss_pred HHHHHHHHHHhhcC---CCEEEEEeCCHHHHHHHHHhhc-eEEecCCcCH
Confidence 45667777766533 5788999999999999999999 7789998875
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.10 E-value=8.2e-06 Score=91.48 Aligned_cols=50 Identities=24% Similarity=0.243 Sum_probs=37.7
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHH
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFG 466 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~ 466 (646)
...++..|+++.|.+.+++.|...+.. ...+||+|||+.++...++.+..
T Consensus 33 ~~~rp~~l~~i~G~~~~l~~l~~~i~~--------------g~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 33 IEVPEKLIDQVIGQEHAVEVIKTAANQ--------------KRHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp SCCCSSHHHHCCSCHHHHHHHHHHHHT--------------TCCEEEECCTTSSHHHHHHHHHH
T ss_pred ccccccccceEECchhhHhhccccccC--------------CCEEEEEeCCCCCHHHHHHHHhc
Confidence 356678899999999999888777653 35899999996666666665544
|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=1.3e-05 Score=79.39 Aligned_cols=135 Identities=19% Similarity=0.130 Sum_probs=76.9
Q ss_pred CcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhh----------------
Q 006411 407 HVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASC---------------- 470 (646)
Q Consensus 407 ~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~---------------- 470 (646)
+.+|++|+|.+...+.+.+.+..... .+..|||+|||+.+++...+.+......
T Consensus 2 ~~~f~~~ig~~~~~~~~~~~~~~~~~----------~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~ 71 (265)
T 2bjv_A 2 AEYKDNLLGEANSFLEVLEQVSHLAP----------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN 71 (265)
T ss_dssp --------CCCHHHHHHHHHHHHHTT----------SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHH
T ss_pred CcccccceeCCHHHHHHHHHHHHHhC----------CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChh
Confidence 35789999999998888887765321 2368999999955555555555443221
Q ss_pred ---------------------------cCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHH
Q 006411 471 ---------------------------RQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKT 523 (646)
Q Consensus 471 ---------------------------~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~riln 523 (646)
..+.+|||||||.+.. .+..
T Consensus 72 ~~~~~l~g~~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~---------------------------------~~q~ 118 (265)
T 2bjv_A 72 LLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPM---------------------------------MVQE 118 (265)
T ss_dssp HHHHHHHCCC---------CCCCHHHHTTTSEEEEESGGGSCH---------------------------------HHHH
T ss_pred HHHHHhcCCcccccccccccccchhhhcCCcEEEEechHhcCH---------------------------------HHHH
Confidence 1245666777665532 2344
Q ss_pred HHHHHHcCCC--------CCCCcEEEEEecCCC-------CcCCHHHHhccccEEEeCCCCCCCcHHHHHHHHHHHh
Q 006411 524 QFLIEMEGFD--------SGSEQILLVGATNRP-------QELDEAARRRLTKRLYIPLPSSGYSGSDMKNLVKEAS 585 (646)
Q Consensus 524 eLL~eLDGl~--------~~~~~VlVIaATNrP-------d~LDpALlRRFDr~I~IplPd~GySGADL~~Lc~eAa 585 (646)
.|+..|+.-. ....++.||+|||.+ ..++++++.||.. +.+.+|.----..|+..+++...
T Consensus 119 ~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~-~~i~lp~L~~R~~di~~l~~~~l 194 (265)
T 2bjv_A 119 KLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDALAF-DVVQLPPLRERESDIMLMAEYFA 194 (265)
T ss_dssp HHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHHHHHCS-EEEECCCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHHcCCccHHHHHhhcC-cEEeCCChhhhhHHHHHHHHHHH
Confidence 5555555310 012358899999985 2478999999974 33444433223467877765443
|
| >3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=98.03 E-value=1.2e-06 Score=98.49 Aligned_cols=140 Identities=15% Similarity=0.152 Sum_probs=86.1
Q ss_pred ccccChHHHHHHHHHHHHhhccCcccccc-CCCCCccccccCCCCchHHHHHHHHHHHhh--------------------
Q 006411 411 DDIAGLEHAKKCVMEMVIWPLLRPDIFKG-CRSPGKGLLLFGPPIGEGEKLVRALFGVAS-------------------- 469 (646)
Q Consensus 411 dDIgGle~~K~~L~E~V~lPL~~pelf~~-~~~PprGVLLyGPPvGesek~Vr~lF~~Ar-------------------- 469 (646)
..|.|.+++|+.|.-.+.. ..+..... .......|||+|||+.++...++.+-..+.
T Consensus 295 ~~I~G~e~vk~al~~~l~~--g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~ 372 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFG--GVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVV 372 (595)
T ss_dssp STTSCCHHHHHHHTTTTTC--CCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECS
T ss_pred chhcChHHHHHHHHHHHhC--CCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceee
Confidence 4689999988776322211 11111111 112234799999995555555555433221
Q ss_pred ----------------hcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCC
Q 006411 470 ----------------CRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFD 533 (646)
Q Consensus 470 ----------------~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~ 533 (646)
.....|+||||||.+-. .+.+.|+..|+.-.
T Consensus 373 ~~~~~g~~~~~~G~l~~A~~gil~IDEid~l~~---------------------------------~~q~~Ll~~le~~~ 419 (595)
T 3f9v_A 373 REKGTGEYYLEAGALVLADGGIAVIDEIDKMRD---------------------------------EDRVAIHEAMEQQT 419 (595)
T ss_dssp SGGGTSSCSEEECHHHHHSSSEECCTTTTCCCS---------------------------------HHHHHHHHHHHSSS
T ss_pred eccccccccccCCeeEecCCCcEEeehhhhCCH---------------------------------hHhhhhHHHHhCCE
Confidence 00147999999997643 13455666665321
Q ss_pred ---------C-CCCcEEEEEecCCCC-------------cCCHHHHhcccc-EEEeCCCC--------------------
Q 006411 534 ---------S-GSEQILLVGATNRPQ-------------ELDEAARRRLTK-RLYIPLPS-------------------- 569 (646)
Q Consensus 534 ---------~-~~~~VlVIaATNrPd-------------~LDpALlRRFDr-~I~IplPd-------------------- 569 (646)
. ...++.||+|||.++ .|++|+++|||. .+..+.|+
T Consensus 420 i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e~~~i~~~il~~~~~~~~~ 499 (595)
T 3f9v_A 420 VSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQDRELANYILDVHSGKSTK 499 (595)
T ss_dssp EEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHHHHHHHHHHHTTTCCCSSS
T ss_pred EEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHHHHHHHHHHHHHhhccccc
Confidence 1 134688999999987 999999999984 55566664
Q ss_pred CCCcHHHHHHHHHHHh
Q 006411 570 SGYSGSDMKNLVKEAS 585 (646)
Q Consensus 570 ~GySGADL~~Lc~eAa 585 (646)
..++..+|+.+|..|.
T Consensus 500 ~~l~~~~l~~~i~~ar 515 (595)
T 3f9v_A 500 NIIDIDTLRKYIAYAR 515 (595)
T ss_dssp STTCCTTTHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHH
Confidence 1567778888776554
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.92 E-value=5.1e-05 Score=88.30 Aligned_cols=139 Identities=16% Similarity=0.173 Sum_probs=91.5
Q ss_pred cccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHh---------------------
Q 006411 410 WDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVA--------------------- 468 (646)
Q Consensus 410 fdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~A--------------------- 468 (646)
|++|+|.+.+++.|.+.+...... ......|...+||+|||+.+++...+.+-...
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~~g---~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~ 633 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRARAG---LKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 633 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHGGG---CSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGG
T ss_pred hcccCCcHHHHHHHHHHHHHHhcc---cCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHH
Confidence 467899999999998888652210 00012344689999999554544444443332
Q ss_pred -----------------------hhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHH
Q 006411 469 -----------------------SCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQF 525 (646)
Q Consensus 469 -----------------------r~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneL 525 (646)
+...++||||||||.+- ..+.+.|
T Consensus 634 s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l~---------------------------------~~~~~~L 680 (854)
T 1qvr_A 634 SRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAH---------------------------------PDVFNIL 680 (854)
T ss_dssp GGC--------------CHHHHHHHCSSEEEEESSGGGSC---------------------------------HHHHHHH
T ss_pred HHHcCCCCCCcCccccchHHHHHHhCCCeEEEEecccccC---------------------------------HHHHHHH
Confidence 22335788888887652 2467888
Q ss_pred HHHHcCCC--C------CCCcEEEEEecCCC--------------------------CcCCHHHHhccccEEEeCCCCCC
Q 006411 526 LIEMEGFD--S------GSEQILLVGATNRP--------------------------QELDEAARRRLTKRLYIPLPSSG 571 (646)
Q Consensus 526 L~eLDGl~--~------~~~~VlVIaATNrP--------------------------d~LDpALlRRFDr~I~IplPd~G 571 (646)
|..||.-. . .-.+++||+|||.+ ..+.|+|+.||+..+.+++|+
T Consensus 681 l~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~-- 758 (854)
T 1qvr_A 681 LQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLT-- 758 (854)
T ss_dssp HHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCC--
T ss_pred HHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCC--
Confidence 88888432 0 01368999999973 346788889999888887764
Q ss_pred CcHHHHHHHHHHHhhhH
Q 006411 572 YSGSDMKNLVKEASMGP 588 (646)
Q Consensus 572 ySGADL~~Lc~eAa~~A 588 (646)
..||..|++......
T Consensus 759 --~edi~~i~~~~l~~~ 773 (854)
T 1qvr_A 759 --KEQIRQIVEIQLSYL 773 (854)
T ss_dssp --HHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHH
Confidence 789998887655433
|
| >2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.91 E-value=5.7e-06 Score=70.97 Aligned_cols=43 Identities=40% Similarity=0.499 Sum_probs=38.3
Q ss_pred CCCCcHHHHHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCCC
Q 006411 569 SSGYSGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRAS 625 (646)
Q Consensus 569 d~GySGADL~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrPS 625 (646)
+.|||||||.+||++|++.|+++. ..+|+++||+.|+++++|.
T Consensus 42 T~G~SGADL~~l~~eAa~~alr~~--------------~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 42 MPGASGAEVKGVCTEAGMYALRER--------------RVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHTT--------------CSEECHHHHHHHHHHHHCC
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHc--------------CCCCCHHHHHHHHHHHccC
Confidence 459999999999999999999862 3679999999999999885
|
| >3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.88 E-value=8.4e-06 Score=67.83 Aligned_cols=41 Identities=41% Similarity=0.536 Sum_probs=36.0
Q ss_pred CCCcHHHHHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhcCC
Q 006411 570 SGYSGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRA 624 (646)
Q Consensus 570 ~GySGADL~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kvrP 624 (646)
.||||+||.++|++|++.|+++ ....|+++||+.|+.++..
T Consensus 35 ~G~SGADi~~l~~eA~~~a~~~--------------~~~~i~~~d~~~Al~~v~~ 75 (78)
T 3kw6_A 35 PGASGAEVKGVCTEAGMYALRE--------------RRVHVTQEDFEMAVAKVMQ 75 (78)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHT--------------TCSEECHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHHh--------------CCCCCCHHHHHHHHHHHHh
Confidence 3999999999999999999986 2357999999999998754
|
| >1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00023 Score=73.72 Aligned_cols=47 Identities=21% Similarity=0.265 Sum_probs=38.5
Q ss_pred HHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 520 RLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 520 rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
...+.||..|+.. ..++++|.+||.|+.|.|++++|+. ++.|+.|+.
T Consensus 123 ~a~naLLk~lEep---~~~~~~Il~t~~~~~l~~ti~SRc~-~~~~~~~~~ 169 (334)
T 1a5t_A 123 AAANALLKTLEEP---PAETWFFLATREPERLLATLRSRCR-LHYLAPPPE 169 (334)
T ss_dssp HHHHHHHHHHTSC---CTTEEEEEEESCGGGSCHHHHTTSE-EEECCCCCH
T ss_pred HHHHHHHHHhcCC---CCCeEEEEEeCChHhCcHHHhhcce-eeeCCCCCH
Confidence 4568889888764 3478888999999999999999985 688988875
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.76 E-value=3.6e-05 Score=70.10 Aligned_cols=110 Identities=9% Similarity=0.029 Sum_probs=69.1
Q ss_pred cccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhh----------------------
Q 006411 412 DIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVAS---------------------- 469 (646)
Q Consensus 412 DIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar---------------------- 469 (646)
+|+|-....+.+.+.+..-. .....|||+|||+.+++...+.+...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a----------~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~ 71 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS----------ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPDNAPQLNDF 71 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT----------TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCEEEECCTTTSSCHHHH
T ss_pred CceeCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEEEECCCCCcchhhhcH
Confidence 57787778888877775521 1235699999996666666666655431
Q ss_pred --hcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCC
Q 006411 470 --CRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNR 547 (646)
Q Consensus 470 --~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNr 547 (646)
.....+|||||||.+-. .+...|+..|... ..++.||+|||+
T Consensus 72 ~~~a~~g~l~ldei~~l~~---------------------------------~~q~~Ll~~l~~~---~~~~~~I~~t~~ 115 (145)
T 3n70_A 72 IALAQGGTLVLSHPEHLTR---------------------------------EQQYHLVQLQSQE---HRPFRLIGIGDT 115 (145)
T ss_dssp HHHHTTSCEEEECGGGSCH---------------------------------HHHHHHHHHHHSS---SCSSCEEEEESS
T ss_pred HHHcCCcEEEEcChHHCCH---------------------------------HHHHHHHHHHhhc---CCCEEEEEECCc
Confidence 12457899999998743 1234455555433 336788999998
Q ss_pred CC-------cCCHHHHhcccc-EEEeCC
Q 006411 548 PQ-------ELDEAARRRLTK-RLYIPL 567 (646)
Q Consensus 548 Pd-------~LDpALlRRFDr-~I~Ipl 567 (646)
+- .+++.+..||.. .|.+|+
T Consensus 116 ~~~~~~~~~~~~~~L~~rl~~~~i~lPp 143 (145)
T 3n70_A 116 SLVELAASNHIIAELYYCFAMTQIACLP 143 (145)
T ss_dssp CHHHHHHHSCCCHHHHHHHHHHEEECCC
T ss_pred CHHHHHHcCCCCHHHHHHhcCCEEeCCC
Confidence 53 466666666543 455554
|
| >1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00014 Score=74.72 Aligned_cols=47 Identities=17% Similarity=0.220 Sum_probs=33.0
Q ss_pred ccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHH
Q 006411 411 DDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGV 467 (646)
Q Consensus 411 dDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~ 467 (646)
++|+|.....+.+.+.+.... ..+..|||+|||+.+++...+.+...
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a----------~~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA----------PSDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC----------STTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHh----------CCCCcEEEECCCCchHHHHHHHHHHh
Confidence 467888888888888776522 23468999999966666666666553
|
| >4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A | Back alignment and structure |
|---|
Probab=97.70 E-value=9.4e-05 Score=95.51 Aligned_cols=72 Identities=32% Similarity=0.467 Sum_probs=49.6
Q ss_pred CeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCCCC-------CcEEEEEec
Q 006411 473 PAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGS-------EQILLVGAT 545 (646)
Q Consensus 473 PsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~~-------~~VlVIaAT 545 (646)
++||||||||.... .+ -+ .+....++.+++ +..|+.... .+|.+||||
T Consensus 1337 ~~VlFiDEinmp~~---------------------d~--yg-~q~~lelLRq~l-e~gg~yd~~~~~~~~~~~i~lIaA~ 1391 (2695)
T 4akg_A 1337 NLVLFCDEINLPKL---------------------DK--YG-SQNVVLFLRQLM-EKQGFWKTPENKWVTIERIHIVGAC 1391 (2695)
T ss_dssp CEEEEEETTTCSCC---------------------CS--SS-CCHHHHHHHHHH-HTSSEECTTTCCEEEEESEEEEEEE
T ss_pred eEEEEecccccccc---------------------cc--cC-chhHHHHHHHHH-hcCCEEEcCCCcEEEecCEEEEEec
Confidence 47999999996432 11 11 223345566655 333432211 358999999
Q ss_pred CCCC-----cCCHHHHhccccEEEeCCCCC
Q 006411 546 NRPQ-----ELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 546 NrPd-----~LDpALlRRFDr~I~IplPd~ 570 (646)
|.|. .||++++||| ..|+++.|+.
T Consensus 1392 Npp~~gGR~~l~~rllRrf-~vi~i~~P~~ 1420 (2695)
T 4akg_A 1392 NPPTDPGRIPMSERFTRHA-AILYLGYPSG 1420 (2695)
T ss_dssp CCTTSTTCCCCCHHHHTTE-EEEECCCCTT
T ss_pred CCCccCCCccCChhhhhee-eEEEeCCCCH
Confidence 9995 8999999999 8899999986
|
| >1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00064 Score=70.40 Aligned_cols=51 Identities=14% Similarity=0.082 Sum_probs=33.0
Q ss_pred HHHHHHHHHHcCCCCCC--CcEEEEEecCCCC---cCC---HHHHhccccEEEeCCCCC
Q 006411 520 RLKTQFLIEMEGFDSGS--EQILLVGATNRPQ---ELD---EAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 520 rilneLL~eLDGl~~~~--~~VlVIaATNrPd---~LD---pALlRRFDr~I~IplPd~ 570 (646)
.++..|+..++.+.... .++.||++||.++ .++ +.+.++|..++.+++++.
T Consensus 159 ~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~ 217 (412)
T 1w5s_A 159 EDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKS 217 (412)
T ss_dssp HHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCH
T ss_pred HHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCH
Confidence 34555555555443112 5799999998776 345 667778877788877653
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.59 E-value=4.2e-05 Score=69.64 Aligned_cols=108 Identities=15% Similarity=0.141 Sum_probs=64.2
Q ss_pred cccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHH-----------------------HHHHHHh
Q 006411 412 DIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLV-----------------------RALFGVA 468 (646)
Q Consensus 412 DIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~V-----------------------r~lF~~A 468 (646)
+++|.+.+.+.+.+.+.... ..+..|||+|||+.+++... ..+|+.|
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~----------~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~~~~~~~~~~~~~~~~a 74 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA----------KRTSPVFLTGEAGSPFETVARYFHKNGTPWVSPARVEYLIDMPMELLQKA 74 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH----------TCSSCEEEEEETTCCHHHHHGGGCCTTSCEECCSSTTHHHHCHHHHHHHT
T ss_pred CceeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCccHHHHHHHHHHhCCCeEEechhhCChHhhhhHHHhC
Confidence 57788888888888876532 12367999999944444333 3344444
Q ss_pred hhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCC
Q 006411 469 SCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRP 548 (646)
Q Consensus 469 r~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrP 548 (646)
.+.+|||||||.+.. . ....|+..|+.-. ..++.||+|||++
T Consensus 75 ---~~~~l~lDei~~l~~---------------------~------------~q~~Ll~~l~~~~--~~~~~iI~~tn~~ 116 (143)
T 3co5_A 75 ---EGGVLYVGDIAQYSR---------------------N------------IQTGITFIIGKAE--RCRVRVIASCSYA 116 (143)
T ss_dssp ---TTSEEEEEECTTCCH---------------------H------------HHHHHHHHHHHHT--TTTCEEEEEEEEC
T ss_pred ---CCCeEEEeChHHCCH---------------------H------------HHHHHHHHHHhCC--CCCEEEEEecCCC
Confidence 367999999998854 1 1223333343322 2457889999975
Q ss_pred -Cc----CCHHHHhccc-cEEEeCC
Q 006411 549 -QE----LDEAARRRLT-KRLYIPL 567 (646)
Q Consensus 549 -d~----LDpALlRRFD-r~I~Ipl 567 (646)
.. +++.+..||. ..|.+|+
T Consensus 117 ~~~~~~~~~~~L~~rl~~~~i~lPp 141 (143)
T 3co5_A 117 AGSDGISCEEKLAGLFSESVVRIPP 141 (143)
T ss_dssp TTTC--CHHHHHHHHSSSEEEEECC
T ss_pred HHHHHhCccHHHHHHhcCcEEeCCC
Confidence 33 4455555754 4566664
|
| >2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00036 Score=72.19 Aligned_cols=45 Identities=20% Similarity=0.164 Sum_probs=37.2
Q ss_pred HHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 520 RLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 520 rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
...+.||..|+... +.+++|.+|+.|..|-|++++| .+.|++|+.
T Consensus 97 ~a~naLLk~LEep~---~~t~fIl~t~~~~kl~~tI~SR---~~~f~~l~~ 141 (305)
T 2gno_A 97 QAANAFLKALEEPP---EYAVIVLNTRRWHYLLPTIKSR---VFRVVVNVP 141 (305)
T ss_dssp HHHHHTHHHHHSCC---TTEEEEEEESCGGGSCHHHHTT---SEEEECCCC
T ss_pred HHHHHHHHHHhCCC---CCeEEEEEECChHhChHHHHce---eEeCCCCCH
Confidence 45688999998643 4678888888999999999999 788988876
|
| >1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0027 Score=69.40 Aligned_cols=94 Identities=22% Similarity=0.365 Sum_probs=62.6
Q ss_pred CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCC
Q 006411 454 IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFD 533 (646)
Q Consensus 454 vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~ 533 (646)
.-..+...+...+.|.. ..|+|+||||.|+. +..+.+..-....+...||..||+-.
T Consensus 234 l~~~~~~~~~ai~~ae~--~~il~~DEidki~~---------------------~~~~~~~D~s~egvq~aLL~~le~~~ 290 (444)
T 1g41_A 234 LINPEELKQKAIDAVEQ--NGIVFIDEIDKICK---------------------KGEYSGADVSREGVQRDLLPLVEGST 290 (444)
T ss_dssp SCCHHHHHHHHHHHHHH--HCEEEEETGGGGSC---------------------CSSCSSSHHHHHHHHHHHHHHHHCCE
T ss_pred ccCHHHHHHHHHHHhcc--CCeeeHHHHHHHhh---------------------ccCCCCCCchHHHHHHHHHHHhcccc
Confidence 34455566666666533 25899999999986 22111112122347788999999842
Q ss_pred C-------CCCcEEEEEec----CCCCcCCHHHHhccccEEEeCCCCC
Q 006411 534 S-------GSEQILLVGAT----NRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 534 ~-------~~~~VlVIaAT----NrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
. ...+|++|+|. +.|.++-|.|+.||+.+|.++..+.
T Consensus 291 ~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~R~~i~i~l~~lt~ 338 (444)
T 1g41_A 291 VSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSA 338 (444)
T ss_dssp EEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCEEEECCCCCH
T ss_pred cccccceecCCcEEEEeccccccCChhhcchHHhcccceeeeCCCCCH
Confidence 1 14679999987 3566667999999999999987653
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0057 Score=56.77 Aligned_cols=57 Identities=21% Similarity=0.149 Sum_probs=35.0
Q ss_pred CCCCcccccccC----hHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhh
Q 006411 404 RDPHVRWDDIAG----LEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVAS 469 (646)
Q Consensus 404 ~~p~VsfdDIgG----le~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar 469 (646)
+..+.+|+++.+ ...+.+.+++++.. + .. .+..+++|+|||+.++...++.+...+.
T Consensus 3 r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~-~---~~-----~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 3 RYWNANLDTYHPKNVSQNRALLTIRVFVHN-F---NP-----EEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp SCTTCCSSSCCCCSHHHHHHHHHHHHHHHS-C---CG-----GGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred hhhhCccccccCCCHHHHHHHHHHHHHHHh-c---cc-----cCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345678999886 33444444444432 1 11 2257899999997667777766665553
|
| >2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.025 Score=61.09 Aligned_cols=112 Identities=17% Similarity=0.191 Sum_probs=69.6
Q ss_pred CeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCCCCCcEEEEEe--------
Q 006411 473 PAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGA-------- 544 (646)
Q Consensus 473 PsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~~~~VlVIaA-------- 544 (646)
|.|+||||+|.|-. ...+.||..|+.... .++|++|
T Consensus 296 ~~VliIDEa~~l~~---------------------------------~a~~aLlk~lEe~~~---~~~il~tn~~~~~i~ 339 (456)
T 2c9o_A 296 PGVLFVDEVHMLDI---------------------------------ECFTYLHRALESSIA---PIVIFASNRGNCVIR 339 (456)
T ss_dssp ECEEEEESGGGCBH---------------------------------HHHHHHHHHTTSTTC---CEEEEEECCSEEECB
T ss_pred ceEEEEechhhcCH---------------------------------HHHHHHHHHhhccCC---CEEEEecCCcccccc
Confidence 57999999998732 356888888876543 4655555
Q ss_pred -cC---CCCcCCHHHHhccccEEEeCCCCC----------------CCcHHHHHHHHHHHhhhHHHHHHHhchhhh--hh
Q 006411 545 -TN---RPQELDEAARRRLTKRLYIPLPSS----------------GYSGSDMKNLVKEASMGPLREALRQGIEIT--RL 602 (646)
Q Consensus 545 -TN---rPd~LDpALlRRFDr~I~IplPd~----------------GySGADL~~Lc~eAa~~Airr~l~~~~~~~--~~ 602 (646)
|+ .|..|+|.++.||.. +.++.++. .++...+..+.+.++....|.++.- .+.. ..
T Consensus 340 ~~~~~~~~~~l~~~i~sR~~~-~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~l-l~~a~~~A 417 (456)
T 2c9o_A 340 GTEDITSPHGIPLDLLDRVMI-IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQL-LTPANLLA 417 (456)
T ss_dssp TTSSCEEETTCCHHHHTTEEE-EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHT-HHHHHHHH
T ss_pred ccccccccccCChhHHhhcce-eeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHH-HHHHHHHH
Confidence 33 288999999999977 48888764 3455555555544422233332211 0000 01
Q ss_pred cccCCCCccHHHHHHHHhhc
Q 006411 603 QKEDMQPVTLQDFENALPQV 622 (646)
Q Consensus 603 ~~~~~~~Vt~eDFe~AL~kv 622 (646)
.......|+.+|+..|+.-+
T Consensus 418 ~~~~~~~v~~~~v~~~~~~~ 437 (456)
T 2c9o_A 418 KINGKDSIEKEHVEEISELF 437 (456)
T ss_dssp HHTTCSSBCHHHHHHHHHHS
T ss_pred hhcCCCccCHHHHHHHHHHh
Confidence 12244579999999998876
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0022 Score=67.84 Aligned_cols=75 Identities=13% Similarity=0.237 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCCCCC
Q 006411 458 EKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSE 537 (646)
Q Consensus 458 ek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~~~ 537 (646)
+..+..+++.+.... +||||+|+.+.. ............+.+.++|..|+++.. ..
T Consensus 170 e~~l~~i~~~l~~~~--LLVIDsI~aL~~---------------------~~~~~s~~G~v~~~lrqlL~~L~~~~k-~~ 225 (331)
T 2vhj_A 170 NVFVDDIARAMLQHR--VIVIDSLKNVIG---------------------AAGGNTTSGGISRGAFDLLSDIGAMAA-SR 225 (331)
T ss_dssp HHHHHHHHHHHHHCS--EEEEECCTTTC--------------------------------CCHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHhhCC--EEEEeccccccc---------------------ccccccccchHHHHHHHHHHHHHHHHh-hC
Confidence 444555566555544 999999999865 111111111123456677777776654 34
Q ss_pred cEEEEEecCCCCcCCHHHHh
Q 006411 538 QILLVGATNRPQELDEAARR 557 (646)
Q Consensus 538 ~VlVIaATNrPd~LDpALlR 557 (646)
++.||++|| |..+|+++..
T Consensus 226 gvtVIlttn-p~s~deal~~ 244 (331)
T 2vhj_A 226 GCVVIASLN-PTSNDDKIVE 244 (331)
T ss_dssp TCEEEEECC-CSSCSSSHHH
T ss_pred CCEEEEEeC-CcccchhHHH
Confidence 678899999 7788877533
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0083 Score=76.00 Aligned_cols=70 Identities=21% Similarity=0.272 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCC-chh-hHHHHHHHHHHHcCCC
Q 006411 456 EGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGE-HES-SRRLKTQFLIEMEGFD 533 (646)
Q Consensus 456 esek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~-~e~-s~rilneLL~eLDGl~ 533 (646)
.+++.++.++..++..+|++||||+|+.+++.. . .++..++ +.. ..|+++++|.+|+++.
T Consensus 1489 ~~E~~l~~~~~lvr~~~~~lVVIDsi~al~p~~---------------~---~~g~~~~~~~~~~~R~lsqlL~~L~~~~ 1550 (2050)
T 3cmu_A 1489 TGEQALEICDALARSGAVDVIVVDSVAALTPKA---------------E---IEGEIGDSHMGLAARMMSQAMRKLAGNL 1550 (2050)
T ss_dssp SHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHH---------------H---HHSCTTCCCTTHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCCEEEEcChhHhcccc---------------c---ccccccccccchHHHHHHHHHHHHHHHH
Confidence 456788888999999999999999999998610 0 0111122 221 3688999999999987
Q ss_pred CCCCcEEEEEe
Q 006411 534 SGSEQILLVGA 544 (646)
Q Consensus 534 ~~~~~VlVIaA 544 (646)
. ..+++||.+
T Consensus 1551 ~-~~~v~VI~t 1560 (2050)
T 3cmu_A 1551 K-QSNTLLIFI 1560 (2050)
T ss_dssp H-TTTCEEEEE
T ss_pred H-hCCcEEEEE
Confidence 7 456666554
|
| >3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.11 Score=57.76 Aligned_cols=65 Identities=14% Similarity=0.099 Sum_probs=42.0
Q ss_pred HHHHHHHHHHc-------CCCCCCCcEEEEEecCCCC-----------cCCHHHHhccccEEE-eCCCCC---------C
Q 006411 520 RLKTQFLIEME-------GFDSGSEQILLVGATNRPQ-----------ELDEAARRRLTKRLY-IPLPSS---------G 571 (646)
Q Consensus 520 rilneLL~eLD-------Gl~~~~~~VlVIaATNrPd-----------~LDpALlRRFDr~I~-IplPd~---------G 571 (646)
.+...|+.-|+ |. .-..++.||||+|... .|.++++.|||-.+. +..|+. -
T Consensus 315 ~~qsaLlEaMEe~~VtI~G~-~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ 393 (506)
T 3f8t_A 315 PHRWALMEAMDKGTVTVDGI-ALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEV 393 (506)
T ss_dssp HHHHHHHHHHHHSEEEETTE-EEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHTTCSEEEETTC--------------
T ss_pred HHHHHHHHHHhCCcEEECCE-EcCCCeEEEEEeCcccccCCCCCccccCCChHHhhheeeEEEecCCCChhHhhcccCCC
Confidence 44555666555 33 2234689999999865 899999999997544 455653 4
Q ss_pred CcHHHHHHHHHHHh
Q 006411 572 YSGSDMKNLVKEAS 585 (646)
Q Consensus 572 ySGADL~~Lc~eAa 585 (646)
++..+|+..+..|-
T Consensus 394 ls~e~L~~yi~~ar 407 (506)
T 3f8t_A 394 PSYTLLRRYLLYAI 407 (506)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 67788887766554
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=95.35 E-value=0.018 Score=53.09 Aligned_cols=41 Identities=20% Similarity=0.306 Sum_probs=29.9
Q ss_pred CccccccCCCCchHHHHHHHHHHHhhhc-------------------CCeeeeehhhhHH
Q 006411 444 GKGLLLFGPPIGEGEKLVRALFGVASCR-------------------QPAVIFVDEIDSL 484 (646)
Q Consensus 444 prGVLLyGPPvGesek~Vr~lF~~Ar~~-------------------aPsIIFIDEIDsL 484 (646)
...++|+||++.++...++.+...+... .|.||+|||++.+
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~lLilDE~~~~ 95 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLTDAAFEAEYLAVDQVEKL 95 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCCGGGGGCSEEEEESTTCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHHHHHhCCCEEEEeCcccc
Confidence 4679999999777777788877765321 3678888887764
|
| >2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=94.99 E-value=0.028 Score=54.71 Aligned_cols=71 Identities=18% Similarity=0.235 Sum_probs=49.9
Q ss_pred cCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCc
Q 006411 471 RQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQE 550 (646)
Q Consensus 471 ~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~ 550 (646)
..++||+|||++.+++ .+.... +.. .+|..+..-. ...+-||.+|+.+..
T Consensus 86 ~~~~vliIDEAq~l~~---------------------~~~~~~--e~~-----rll~~l~~~r--~~~~~iil~tq~~~~ 135 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWP---------------------ARSAGS--KIP-----ENVQWLNTHR--HQGIDIFVLTQGPKL 135 (199)
T ss_dssp GTTCEEEETTGGGTSB---------------------CCCTTC--CCC-----HHHHGGGGTT--TTTCEEEEEESCGGG
T ss_pred cCceEEEEEChhhhcc---------------------Cccccc--hhH-----HHHHHHHhcC--cCCeEEEEECCCHHH
Confidence 4589999999999976 331111 111 2444454333 245677888888999
Q ss_pred CCHHHHhccccEEEeCCCCCC
Q 006411 551 LDEAARRRLTKRLYIPLPSSG 571 (646)
Q Consensus 551 LDpALlRRFDr~I~IplPd~G 571 (646)
||.+++.|++.++.++.|..|
T Consensus 136 l~~~lr~ri~~~~~l~~~~~~ 156 (199)
T 2r2a_A 136 LDQNLRTLVRKHYHIASNKMG 156 (199)
T ss_dssp BCHHHHTTEEEEEEEEECSSC
T ss_pred HhHHHHHHhheEEEEcCcccC
Confidence 999999999999999987654
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=94.81 E-value=0.0049 Score=65.89 Aligned_cols=122 Identities=12% Similarity=0.095 Sum_probs=69.5
Q ss_pred hHHHHHHHHHHHHhhcc-Cc-------ccccc--C-CCCCccccccCCCCchHHHHHHHHHHHh----------------
Q 006411 416 LEHAKKCVMEMVIWPLL-RP-------DIFKG--C-RSPGKGLLLFGPPIGEGEKLVRALFGVA---------------- 468 (646)
Q Consensus 416 le~~K~~L~E~V~lPL~-~p-------elf~~--~-~~PprGVLLyGPPvGesek~Vr~lF~~A---------------- 468 (646)
..++++.| +.|.+|.. .+ ..+.. . ..++..++|+|||+.++...++.+....
T Consensus 131 ~~~i~~~l-~~v~~~~~l~~~~~~~~~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~~~~~ 209 (377)
T 1svm_A 131 SADIEEWM-AGVAWLHCLLPKMDSVVYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNF 209 (377)
T ss_dssp CCCHHHHH-HHHHHHTTTSTTHHHHHHHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTTHHH
T ss_pred hHHHHHHH-hcchhhhhhhhhhhHHHHHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccchhHHH
Confidence 34466666 67777662 11 12222 1 2456789999999666667776665432
Q ss_pred ---hhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCCCCCcEEEEEec
Q 006411 469 ---SCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGAT 545 (646)
Q Consensus 469 ---r~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~~~~VlVIaAT 545 (646)
...+..++|+||++.+... .++....... .....+...+||. |.|+++|
T Consensus 210 ~lg~~~q~~~~l~dd~~~~~~~--------------------~r~l~~~~~~--~~~~~l~~~ldG~------v~v~~~t 261 (377)
T 1svm_A 210 ELGVAIDQFLVVFEDVKGTGGE--------------------SRDLPSGQGI--NNLDNLRDYLDGS------VKVNLEK 261 (377)
T ss_dssp HHGGGTTCSCEEETTCCCSTTT--------------------TTTCCCCSHH--HHHHTTHHHHHCS------SCEEECC
T ss_pred HHHHhcchhHHHHHHHHHHHHH--------------------HhhccccCcc--hHHHHHHHHhcCC------CeEeecc
Confidence 1123344555565555420 1111111110 1234566667763 5678999
Q ss_pred CCCCcCCHHHHh--ccccEEEeCC
Q 006411 546 NRPQELDEAARR--RLTKRLYIPL 567 (646)
Q Consensus 546 NrPd~LDpALlR--RFDr~I~Ipl 567 (646)
|+|+.| +++++ |++..+++..
T Consensus 262 n~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 262 KHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp SSSCCE-EECCCCEEEEECSCCCC
T ss_pred CchhhH-HHhhcCcccChhHHhhc
Confidence 999999 68877 8888776644
|
| >4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A | Back alignment and structure |
|---|
Probab=92.17 E-value=1 Score=59.01 Aligned_cols=33 Identities=18% Similarity=0.273 Sum_probs=26.5
Q ss_pred CcEEEEEecC----CCCcCCHHHHhccccEEEeCCCCC
Q 006411 537 EQILLVGATN----RPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 537 ~~VlVIaATN----rPd~LDpALlRRFDr~I~IplPd~ 570 (646)
....|++|.| .-..|++++++|| +.|.+..||.
T Consensus 746 ~~~~vfiT~NPgy~g~~eLP~~Lk~~F-r~v~m~~Pd~ 782 (2695)
T 4akg_A 746 PHTAVFITLNPGYNGRSELPENLKKSF-REFSMKSPQS 782 (2695)
T ss_dssp TTCEEEEEECCCSSSSCCCCHHHHTTE-EEEECCCCCH
T ss_pred CCceEEEEeCCCccCcccccHHHHhhe-EEEEeeCCCH
Confidence 3456778888 4567999999999 6789999986
|
| >1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A* | Back alignment and structure |
|---|
Probab=89.42 E-value=2.7 Score=44.31 Aligned_cols=49 Identities=12% Similarity=0.060 Sum_probs=29.2
Q ss_pred cccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHh
Q 006411 410 WDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVA 468 (646)
Q Consensus 410 fdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~A 468 (646)
+..+.|-....+.+.+.+.. + ......|||+|+++.+.+...+.+....
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~-~---------a~~~~~vli~Ge~GtGK~~lAr~ih~~s 184 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKK-I---------SCAECPVLITGESGVGKEVVARLIHKLS 184 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHH-H---------TTCCSCEEEECSTTSSHHHHHHHHHHHS
T ss_pred chhhhhccHHhhHHHHHHHH-h---------cCCCCCeEEecCCCcCHHHHHHHHHHhc
Confidence 45677766666666665544 1 1223568999999666665555555443
|
| >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=88.34 E-value=0.3 Score=48.67 Aligned_cols=24 Identities=13% Similarity=0.159 Sum_probs=16.1
Q ss_pred CccccccCCCCchHHHHHHHHHHH
Q 006411 444 GKGLLLFGPPIGEGEKLVRALFGV 467 (646)
Q Consensus 444 prGVLLyGPPvGesek~Vr~lF~~ 467 (646)
.+++||||||+.+.......+...
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999965555555555443
|
| >1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A* | Back alignment and structure |
|---|
Probab=86.59 E-value=1.8 Score=44.03 Aligned_cols=116 Identities=16% Similarity=0.167 Sum_probs=61.4
Q ss_pred CCccccccCCCCchHHHHHHHHHHHhhhc--CCe-eeeeh---hhhHHhhhcccccccchhhhhhhhhhccccCCCCCch
Q 006411 443 PGKGLLLFGPPIGEGEKLVRALFGVASCR--QPA-VIFVD---EIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHE 516 (646)
Q Consensus 443 PprGVLLyGPPvGesek~Vr~lF~~Ar~~--aPs-IIFID---EIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e 516 (646)
....+|||||+....+..++.+.+.+.+. .++ ++.+| ++..+.. .+.+.++++..+..--+..+. .
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~~plf~~~kvvii~~~~~--k 88 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPNTDWNAIFS------LCQAMSLFASRQTLLLLLPEN--G 88 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCTTCCHHHHHH------HHHHHHHCCSCEEEEEECCSS--C
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecCCCCHHHHHH------HhcCcCCccCCeEEEEECCCC--C
Confidence 34689999999555666666666655432 343 34344 3334432 223344444443332222211 0
Q ss_pred hhHHHHHHHHHHHcCCCCCCCcEEEEEecCCC------CcCCHHHHhccccEEEeCCCCC
Q 006411 517 SSRRLKTQFLIEMEGFDSGSEQILLVGATNRP------QELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 517 ~s~rilneLL~eLDGl~~~~~~VlVIaATNrP------d~LDpALlRRFDr~I~IplPd~ 570 (646)
......+.|+..++.... .+++|.+|+.+ ..+-+++..|. ..+.+..|+.
T Consensus 89 l~~~~~~aLl~~le~p~~---~~~~il~~~~~~~~~~~~k~~~~i~sr~-~~~~~~~l~~ 144 (343)
T 1jr3_D 89 PNAAINEQLLTLTGLLHD---DLLLIVRGNKLSKAQENAAWFTALANRS-VQVTCQTPEQ 144 (343)
T ss_dssp CCTTHHHHHHHHHTTCBT---TEEEEEEESCCCTTTTTSHHHHHHTTTC-EEEEECCCCT
T ss_pred CChHHHHHHHHHHhcCCC---CeEEEEEcCCCChhhHhhHHHHHHHhCc-eEEEeeCCCH
Confidence 122356778888876543 34444444443 34666777776 4567777654
|
| >1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A | Back alignment and structure |
|---|
Probab=85.85 E-value=2.1 Score=43.79 Aligned_cols=45 Identities=11% Similarity=0.223 Sum_probs=29.1
Q ss_pred CcEEEEEecCC-C----------CcCCHHHHhccccEEEeC---CCCCC-CcHHHHHHHHH
Q 006411 537 EQILLVGATNR-P----------QELDEAARRRLTKRLYIP---LPSSG-YSGSDMKNLVK 582 (646)
Q Consensus 537 ~~VlVIaATNr-P----------d~LDpALlRRFDr~I~Ip---lPd~G-ySGADL~~Lc~ 582 (646)
.+..||.|||. + +...++|.+|+- .+.|+ +++.| .+..|++..+.
T Consensus 189 ~~tPvIitsN~~i~~~~~g~~~s~~~~~~L~sR~~-~f~F~~~~p~~~~~lt~~~~~~f~~ 248 (267)
T 1u0j_A 189 DPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQDRMF-KFELTRRLDHDFGKVTKQEVKDFFR 248 (267)
T ss_dssp CCCCEEEEESSCTTCEEETTEEECTTHHHHHTTEE-EEECCSCCCTTSCCCCHHHHHHHHH
T ss_pred cCCCEEEEecCCcccccccCccchhhhHHHhhhEE-EEECCCcCCcccCCCCHHHHHHHHH
Confidence 34677888887 2 255678887542 23443 22446 88999998886
|
| >3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A | Back alignment and structure |
|---|
Probab=85.44 E-value=8.1 Score=40.48 Aligned_cols=48 Identities=25% Similarity=0.337 Sum_probs=29.4
Q ss_pred cEEEEEecCCC-------CcCCHHHHhcccc-EEEeCCCCCCCcHHHHHHHHHHHhhh
Q 006411 538 QILLVGATNRP-------QELDEAARRRLTK-RLYIPLPSSGYSGSDMKNLVKEASMG 587 (646)
Q Consensus 538 ~VlVIaATNrP-------d~LDpALlRRFDr-~I~IplPd~GySGADL~~Lc~eAa~~ 587 (646)
.|-||+|||+. ..+.+.|..|+.- .|.+|+..+ -..||..|++.....
T Consensus 263 ~~rii~at~~~l~~~v~~g~fr~dL~~rl~~~~i~lPpLre--R~~Di~~l~~~~l~~ 318 (368)
T 3dzd_A 263 DIRVISATNKNLEEEIKKGNFREDLYYRLSVFQIYLPPLRE--RGKDVILLAEYFLKK 318 (368)
T ss_dssp CCEEEEEESSCHHHHHHTTSSCHHHHHHHTSEEEECCCGGG--STTHHHHHHHHHHHH
T ss_pred eeEEEEecCCCHHHHHHcCCccHHHHHHhCCeEEeCCChhh--chhhHHHHHHHHHHH
Confidence 47799999963 2334455556543 466665443 347898888665543
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=82.11 E-value=1.8 Score=40.22 Aligned_cols=65 Identities=18% Similarity=0.085 Sum_probs=37.7
Q ss_pred CCcccccccChHH----HHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhcCCeeeee
Q 006411 406 PHVRWDDIAGLEH----AKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCRQPAVIFV 478 (646)
Q Consensus 406 p~VsfdDIgGle~----~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~aPsIIFI 478 (646)
...+|+++.+... +.+.+.+++... +. ..++++++|+|||+.++...++.+...+......++++
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~-----~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~ 88 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFAERFVAEY---EP-----GKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIV 88 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHHHHHHHHC---CS-----SCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred HcCCHhhccCCChhHHHHHHHHHHHHHHh---hh-----ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 4678999887542 334444444321 11 11248999999997667777777766654433333333
|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
Probab=81.92 E-value=1.3 Score=58.72 Aligned_cols=33 Identities=33% Similarity=0.529 Sum_probs=28.2
Q ss_pred CcEEEEEecCCC-----CcCCHHHHhccccEEEeCCCCC
Q 006411 537 EQILLVGATNRP-----QELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 537 ~~VlVIaATNrP-----d~LDpALlRRFDr~I~IplPd~ 570 (646)
.++.+|+|.|-| ..|+++++|||.. ++++.|+.
T Consensus 1421 ~d~~~vaamnPp~~gGr~~l~~Rf~r~F~v-i~i~~ps~ 1458 (3245)
T 3vkg_A 1421 DKIQFVGACNPPTDAGRVQLTHRFLRHAPI-LLVDFPST 1458 (3245)
T ss_dssp SSEEEEEEECCTTSTTCCCCCHHHHTTCCE-EECCCCCH
T ss_pred cCeEEEEEcCCCCCCCCccCCHHHHhhceE-EEeCCCCH
Confidence 468899999988 4699999999966 79999975
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 646 | ||||
| d1lv7a_ | 256 | c.37.1.20 (A:) AAA domain of cell division protein | 7e-45 | |
| d1ixza_ | 247 | c.37.1.20 (A:) AAA domain of cell division protein | 2e-44 | |
| d1r7ra3 | 265 | c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p | 2e-37 | |
| d1e32a2 | 258 | c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p | 3e-27 | |
| d1w44a_ | 321 | c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [Ta | 3e-14 | |
| d1gvnb_ | 273 | c.37.1.21 (B:) Plasmid maintenance system epsilon/ | 2e-10 | |
| d1d2na_ | 246 | c.37.1.20 (A:) Hexamerization domain of N-ethylmal | 3e-09 | |
| d1ofha_ | 309 | c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId | 1e-06 | |
| d1svma_ | 362 | c.37.1.20 (A:) Papillomavirus large T antigen heli | 1e-04 | |
| d1ixsb2 | 239 | c.37.1.20 (B:4-242) Holliday junction helicase Ruv | 3e-04 | |
| d1in4a2 | 238 | c.37.1.20 (A:17-254) Holliday junction helicase Ru | 0.002 |
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Score = 158 bits (401), Expect = 7e-45
Identities = 67/290 (23%), Positives = 111/290 (38%), Gaps = 99/290 (34%)
Query: 401 IMDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGC-RSPGKGLLLFGPP------ 453
+ + + D+AG + AK+ V E+V + L P F+ KG+L+ GPP
Sbjct: 2 LTEDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTL 60
Query: 454 -------------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQM 488
+G G VR +F A P +IF+DEID++
Sbjct: 61 LAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGR-- 118
Query: 489 LPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRP 548
+R G H+ + Q L+EM+GF+ +E I+++ ATNRP
Sbjct: 119 --------------QRG---AGLGGGHDEREQTLNQMLVEMDGFEG-NEGIIVIAATNRP 160
Query: 549 QELDEAARR--RLTKRLYIPLPS------------------------------SGYSGSD 576
LD A R R +++ + LP G+SG+D
Sbjct: 161 DVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGAD 220
Query: 577 MKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRASV 626
+ NLV EA++ R + + V++ +FE A ++ +
Sbjct: 221 LANLVNEAALFAAR--------------GNKRVVSMVEFEKAKDKIMMGL 256
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Length = 247 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Score = 156 bits (397), Expect = 2e-44
Identities = 69/277 (24%), Positives = 105/277 (37%), Gaps = 99/277 (35%)
Query: 406 PHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGC-RSPGKGLLLFGPP----------- 453
P V + D+AG E AK+ + E+V + L P F KG+LL GPP
Sbjct: 4 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAV 62
Query: 454 --------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMH 493
+G G VR LF A P ++F+DEID++
Sbjct: 63 AGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGR------- 115
Query: 494 VHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDE 553
KR G ++ + Q L+EM+GF+ I+++ ATNRP LD
Sbjct: 116 ---------KR---GSGVGGGNDEREQTLNQLLVEMDGFEK-DTAIVVMAATNRPDILDP 162
Query: 554 AARR--RLTKRLYIPLPS------------------------------SGYSGSDMKNLV 581
A R R +++ I P G+ G+D++NL+
Sbjct: 163 ALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLL 222
Query: 582 KEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENA 618
EA++ RE R+ +T++D E A
Sbjct: 223 NEAALLAAREGRRK--------------ITMKDLEEA 245
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Length = 265 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 138 bits (347), Expect = 2e-37
Identities = 70/280 (25%), Positives = 108/280 (38%), Gaps = 86/280 (30%)
Query: 406 PHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGC-RSPGKGLLLFGPP----------- 453
P V W+DI GLE K+ + E+V +P+ PD F +P KG+L +GPP
Sbjct: 2 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAI 61
Query: 454 --------------------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMH 493
GE E VR +F A P V+F DE+DS
Sbjct: 62 ANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDS---------- 111
Query: 494 VHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDE 553
R ++ R+ Q L EM+G + + + ++GATNRP +D
Sbjct: 112 ------IAKARGGNI---GDGGGAADRVINQILTEMDGMST-KKNVFIIGATNRPDIIDP 161
Query: 554 AARR--RLTKRLYIPLP------------------------------SSGYSGSDMKNLV 581
A R RL + +YIPLP ++G+SG+D+ +
Sbjct: 162 AILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEIC 221
Query: 582 KEASMGPLREALRQGIEITRLQKED--MQPVTLQDFENAL 619
+ A +RE++ I R ++ + V D +
Sbjct: 222 QRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEI 261
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 108 bits (271), Expect = 3e-27
Identities = 57/258 (22%), Positives = 94/258 (36%), Gaps = 48/258 (18%)
Query: 408 VRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGC-RSPGKGLLLFGPPIGEGEKLVRALFG 466
V +DD+ G + EMV PL P +FK P +G+LL+GPP G G+ L+
Sbjct: 1 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPP-GTGKTLIARAVA 59
Query: 467 VASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKR----------FYFQRKSDGEHE 516
+ +I EI S L+ + ++ E
Sbjct: 60 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGE 119
Query: 517 SSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPS----- 569
RR+ L+ + ++++ ATNRP +D A RR R + + I +P
Sbjct: 120 VERRIV-SQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRL 178
Query: 570 -------------------------SGYSGSDMKNLVKEASMGPLRE---ALRQGIEITR 601
G+ G+D+ L EA++ +R+ + E
Sbjct: 179 EILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETID 238
Query: 602 LQKEDMQPVTLQDFENAL 619
+ + VT+ DF AL
Sbjct: 239 AEVMNSLAVTMDDFRWAL 256
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} Length = 321 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Score = 72.0 bits (176), Expect = 3e-14
Identities = 24/281 (8%), Positives = 61/281 (21%), Gaps = 94/281 (33%)
Query: 400 EIMDRDPHVRWDDIAGL-EHAKKCVMEMVI-WPLLRPDIFK--GCRSPGKGLLLFGPP-- 453
+ D V + + + + ++++ P + + G R +++ G
Sbjct: 75 KAEDGSVSVVQVENGFMKQGHRGWLVDLTGELVGCSPVVAEFGGHRYASGMVIVTGKGNS 134
Query: 454 -------------------------------IGEGEKLVRALFGVASCRQPAVIFVDEID 482
+ V + Q VI +D +
Sbjct: 135 GKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAM--LQHRVIVIDSLK 192
Query: 483 SLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLV 542
+++ + R L ++ + S +++
Sbjct: 193 NVIG---------------------AAGGNTTSGGISRGAFDLLSDIGAMAA-SRGCVVI 230
Query: 543 GATNR---PQELDEAARR--RLTKRLYIPLPS------------SGY--SGSDMKNLVKE 583
+ N ++ E + R + G ++ E
Sbjct: 231 ASLNPTSNDDKIVELVKEASRSNSTSLVISTDVDGEWQVLTRTGEGLQRLTHTLQTSYGE 290
Query: 584 ASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQVRA 624
S + Q Q A+ V
Sbjct: 291 HS---VLTIHT-----------SKQSGGKQASGKAIQTVIK 317
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Score = 60.0 bits (144), Expect = 2e-10
Identities = 34/270 (12%), Positives = 76/270 (28%), Gaps = 49/270 (18%)
Query: 408 VRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGV 467
V + D E+ +E +I + LL G P G G+ +R+
Sbjct: 4 VNFTDK-QFENRLNDNLEELIQGKKAVESPTAF-------LLGGQP-GSGKTSLRSAIFE 54
Query: 468 ASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKR----------------------- 504
+ VI D + ++ +
Sbjct: 55 ETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQGYNLVI 114
Query: 505 -FYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARR--RLTK 561
+ ++ + +M L G R + + R T
Sbjct: 115 EGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYL-GTIERYETMYADDPMTARATP 173
Query: 562 RLYIPLPSSGYSGSDMKNLVKEASMGPLREALRQGIEITR------------LQKEDMQP 609
+ + ++++ L K +R R+G+++ L+KE +
Sbjct: 174 KQAHDIV-VKNLPTNLETLHKTGLFSDIRLYNREGVKLYSSLETPSISPKETLEKELNRK 232
Query: 610 VTLQDFENALPQVRASVSLNELGIYEEWNK 639
V+ ++ + L ++ + LN+ E+
Sbjct: 233 VSGKEIQPTLERIEQKMVLNKHQETPEFKA 262
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Score = 56.1 bits (134), Expect = 3e-09
Identities = 19/150 (12%), Positives = 43/150 (28%), Gaps = 10/150 (6%)
Query: 431 LLRPDIFKGCRSPGKGLLLFGPP---------IGEGEKLVRALFGVASCRQPAVIFVDEI 481
LL R+P +LL GPP E + + + +
Sbjct: 27 LLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKC 86
Query: 482 DSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILL 541
++ + S + L+ ++ ++L+
Sbjct: 87 QAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLI 146
Query: 542 VGATNRPQELDEAA-RRRLTKRLYIPLPSS 570
+G T+R L E + +++P ++
Sbjct: 147 IGTTSRKDVLQEMEMLNAFSTTIHVPNIAT 176
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Score = 48.3 bits (114), Expect = 1e-06
Identities = 36/227 (15%), Positives = 68/227 (29%), Gaps = 30/227 (13%)
Query: 411 DDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRS--PGKGLLLFGPPIGEGE-KLVRALFGV 467
I G AK+ V + R + + R K +L+ GP G G+ ++ R L +
Sbjct: 14 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPT-GVGKTEIARRLAKL 72
Query: 468 ASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYF-----------------QRK 510
A+ V + + + + +
Sbjct: 73 ANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGE 132
Query: 511 SDGEHESSRRLKTQFLIEMEGFDS-------GSEQILLVGATNRPQELDEAARRRLTKRL 563
G S ++ L +EG ++ IL + + L RL
Sbjct: 133 YSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRL 192
Query: 564 YIPLPSSGYSGSDMKNLVKE--ASMGPLREALRQGIEITRLQKEDMQ 608
I + + S +D + ++ E AS+ +AL + D
Sbjct: 193 PIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAV 239
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Length = 362 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Score = 42.0 bits (98), Expect = 1e-04
Identities = 19/184 (10%), Positives = 45/184 (24%), Gaps = 36/184 (19%)
Query: 454 IGEGEKLVRALFGVASC------RQPAVIFVDEIDSLLSQMLPYMHV-----HHIKLFCL 502
+G +F P+ ++ +D+L + + V H K +
Sbjct: 196 LGVAIDQFLVVFEDVKGTGGESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQI 255
Query: 503 KRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSE--QILLVGATNRPQELDEAARRRLT 560
++ + + + I+ D + R + A L
Sbjct: 256 FPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLERSEFLLEKRIIQSGIALLLMLI 315
Query: 561 KRLYIPLPSSGYSGSDMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALP 620
++ ++ + RL KE +L ++
Sbjct: 316 W---------YRPVAEFAQSIQSRIVEWKE----------RLDKE----FSLSVYQKMKF 352
Query: 621 QVRA 624
V
Sbjct: 353 NVAM 356
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Score = 40.3 bits (93), Expect = 3e-04
Identities = 32/234 (13%), Positives = 61/234 (26%), Gaps = 31/234 (13%)
Query: 409 RWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVA 468
D+ G E K+ + + R + + LLLFGPP L +
Sbjct: 7 TLDEYIGQERLKQKLRVYLEAAKARKEPL-------EHLLLFGPPGLGKTTLAHVIAHEL 59
Query: 469 SCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESS---RRLKTQF 525
+ + + + + + EH +
Sbjct: 60 GVNLRVTSGPAIEKPGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIV 119
Query: 526 LIEMEGFDSGSEQ---ILLVGATNRPQELDEAARRRLTKRLYIPLPSSGYSG-------- 574
+ + + + L+GAT RP + R ++ +
Sbjct: 120 IGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDAR 179
Query: 575 -------SDMKNLVKEASMGPLREALRQGIEITRL--QKEDMQPVTLQDFENAL 619
+ + S G +R A R R Q + +T + AL
Sbjct: 180 LLGVRITEEAALEIGRRSRGTMRVAKRL-FRRVRDFAQVAGEEVITRERALEAL 232
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Score = 38.0 bits (87), Expect = 0.002
Identities = 34/234 (14%), Positives = 71/234 (30%), Gaps = 32/234 (13%)
Query: 409 RWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVA 468
D+ G E+ KK + + +R ++ +LL GPP G G+ + +
Sbjct: 7 SLDEFIGQENVKKKLSLALEAAKMRGEVL-------DHVLLAGPP-GLGKTTLAHIIASE 58
Query: 469 SCRQPAV------IFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLK 522
V + ++ ++L+ + + ++ L + + + +
Sbjct: 59 LQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIM 118
Query: 523 TQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSSGYSGSDMKN--- 579
+ + LVGAT R L R R L + + +K
Sbjct: 119 IGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAAS 178
Query: 580 ------------LVKEASMGPLREALRQGIEITR--LQKEDMQPVTLQDFENAL 619
++ + S G R A+R + R L + +
Sbjct: 179 LMDVEIEDAAAEMIAKRSRGTPRIAIR-LTKRVRDMLTVVKADRINTDIVLKTM 231
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 646 | |||
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 100.0 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 100.0 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 100.0 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 99.97 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 99.77 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 99.74 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 99.62 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 99.32 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 99.1 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 98.9 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 98.82 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 98.67 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 98.65 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 98.61 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 98.59 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 98.48 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 98.41 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 98.37 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 98.35 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 98.27 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 98.11 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 98.02 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 97.88 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 97.72 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 97.47 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 97.42 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 97.17 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 97.04 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 96.97 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 96.94 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 96.93 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 94.59 |
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.5e-35 Score=297.11 Aligned_cols=184 Identities=37% Similarity=0.654 Sum_probs=160.6
Q ss_pred ccCCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC---------------------------
Q 006411 402 MDRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP--------------------------- 453 (646)
Q Consensus 402 ~~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP--------------------------- 453 (646)
.+..+.|||+||+|++++|++|++.|.+ +.+++.|..++ .+|+|+||||||
T Consensus 3 ~~~~~~~t~~Di~Gl~~~k~~l~e~v~~-~~~~~~~~~~g~~~~~~iLL~GppGtGKT~la~~iA~~~~~~~~~i~~~~l 81 (256)
T d1lv7a_ 3 TEDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDF 81 (256)
T ss_dssp EECSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSS
T ss_pred CCCCCCCCHHHHhchHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEeeCCCCCCccHHHHHHHHHcCCCEEEEEhHHh
Confidence 4567899999999999999999998865 88999999876 778999999999
Q ss_pred ----CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCC--CCCchhhHHHHHHHHH
Q 006411 454 ----IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKS--DGEHESSRRLKTQFLI 527 (646)
Q Consensus 454 ----vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s--~~~~e~s~rilneLL~ 527 (646)
+|+++++++.+|+.|+.++||||||||||+|+. +|.. .+.+....+++++||.
T Consensus 82 ~~~~~g~~~~~l~~~f~~A~~~~P~il~iDeiD~l~~---------------------~r~~~~~~~~~~~~~~~~~ll~ 140 (256)
T d1lv7a_ 82 VEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGR---------------------QRGAGLGGGHDEREQTLNQMLV 140 (256)
T ss_dssp TTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTC---------------------CCSTTSCCTTCHHHHHHHHHHH
T ss_pred hhcchhHHHHHHHHHHHHHHHcCCEEEEEEChhhhCc---------------------cCCCCCCCCcHHHHHHHHHHHH
Confidence 689999999999999999999999999999987 3332 2333456789999999
Q ss_pred HHcCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC------------------------------CCcHH
Q 006411 528 EMEGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS------------------------------GYSGS 575 (646)
Q Consensus 528 eLDGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~------------------------------GySGA 575 (646)
+||++.. ..+|+||||||+|+.||||++| |||++|+|++|+. ||||+
T Consensus 141 ~~d~~~~-~~~v~vIatTn~~~~ld~al~R~gRfd~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~G~s~a 219 (256)
T d1lv7a_ 141 EMDGFEG-NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGA 219 (256)
T ss_dssp HHHTCCS-SSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHH
T ss_pred HhhCCCC-CCCEEEEEeCCCcccCCHhHcCCCCCCEEEECCCcCHHHHHHHHHHhccCCCcCcccCHHHHHHhCCCCCHH
Confidence 9999977 6789999999999999999999 9999999999985 99999
Q ss_pred HHHHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHhhc
Q 006411 576 DMKNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALPQV 622 (646)
Q Consensus 576 DL~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~kv 622 (646)
||+.+|++|++.|+++ ....|+.+||+.|++++
T Consensus 220 di~~l~~~A~~~a~~~--------------~~~~i~~~d~~~Al~rv 252 (256)
T d1lv7a_ 220 DLANLVNEAALFAARG--------------NKRVVSMVEFEKAKDKI 252 (256)
T ss_dssp HHHHHHHHHHHHHHHT--------------TCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc--------------CCCccCHHHHHHHHHHH
Confidence 9999999999988864 23568999999999986
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=8.5e-36 Score=298.89 Aligned_cols=191 Identities=35% Similarity=0.614 Sum_probs=163.9
Q ss_pred cccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC-------------------------------Cc
Q 006411 408 VRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP-------------------------------IG 455 (646)
Q Consensus 408 VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP-------------------------------vG 455 (646)
|+|+||||++++|++|++.|.+|+++|+.|...+ .+|+|||||||| +|
T Consensus 1 ~~~~dv~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~l~~ala~~~~~~~~~i~~~~l~~~~~g 80 (258)
T d1e32a2 1 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAG 80 (258)
T ss_dssp CCGGGCCSCSHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCTTSSHHHHHHHHHHHTTCEEEEECHHHHTTSCTT
T ss_pred CChhhhccHHHHHHHHHHHHHHHhcCHHHHHhCCCCCCceeEEecCCCCCchHHHHHHHHHhCCeEEEEEchhhcccccc
Confidence 7899999999999999999999999999999877 778999999999 78
Q ss_pred hHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCCC
Q 006411 456 EGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSG 535 (646)
Q Consensus 456 esek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~ 535 (646)
+++..++.+|+.|+.++||||||||||.++. +|. .+.++...++++.++..+++...
T Consensus 81 ~~~~~l~~~f~~A~~~~p~il~iDeid~l~~---------------------~r~-~~~~~~~~~~~~~~~~~~~~~~~- 137 (258)
T d1e32a2 81 ESESNLRKAFEEAEKNAPAIIFIDELDAIAP---------------------KRE-KTHGEVERRIVSQLLTLMDGLKQ- 137 (258)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEESSGGGTCC---------------------HHH-HCCCTTHHHHHHHHHHHHHTCCC-
T ss_pred cHHHHHHHHHHHHHhcCCeEEEehhhhhhcc---------------------CCC-CCCCchHHHHHHHhccccccccc-
Confidence 8899999999999999999999999999997 332 23345567899999999999877
Q ss_pred CCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC------------------------------CCcHHHHHHHHHH
Q 006411 536 SEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS------------------------------GYSGSDMKNLVKE 583 (646)
Q Consensus 536 ~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~------------------------------GySGADL~~Lc~e 583 (646)
..+|+||||||+|+.||+|++| |||++|+|++|+. ||||+||+.+|++
T Consensus 138 ~~~vlvi~tTn~~~~ld~al~r~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~G~s~adl~~lv~~ 217 (258)
T d1e32a2 138 RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSE 217 (258)
T ss_dssp SSCEEEEEEESCGGGSCGGGTSTTSSCEEEECCCCCHHHHHHHHHHTTTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHH
T ss_pred cCCccEEEeCCCccccchhhhhcccccceeECCCCCHHHHHHHhhhhccCcccccccchhhhhhcccCCCHHHHHHHHHH
Confidence 6789999999999999999999 9999999999985 9999999999999
Q ss_pred HhhhHHHHHHHhch---hhhhhcccCCCCccHHHHHHHHhh
Q 006411 584 ASMGPLREALRQGI---EITRLQKEDMQPVTLQDFENALPQ 621 (646)
Q Consensus 584 Aa~~Airr~l~~~~---~~~~~~~~~~~~Vt~eDFe~AL~k 621 (646)
|++.|+++...... +..........+|+++||+.||++
T Consensus 218 A~~~a~~~~~~~~~~~~~~~~~~~~~~~~it~~Df~~AL~~ 258 (258)
T d1e32a2 218 AALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQ 258 (258)
T ss_dssp HHHHHHHHHHHHHCCCSSCCBHHHHHHCCBCHHHHHHHHTC
T ss_pred HHHHHHHhhccccchhhhhhhhhhhccCccCHHHHHHHhCc
Confidence 99999988543210 000111123357999999999974
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.6e-34 Score=289.40 Aligned_cols=180 Identities=38% Similarity=0.651 Sum_probs=157.0
Q ss_pred CCCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC-----------------------------
Q 006411 404 RDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP----------------------------- 453 (646)
Q Consensus 404 ~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP----------------------------- 453 (646)
+.|+|+|+||+|++++|+.|++.|. ++.+|+.|..++ .+|+||||||||
T Consensus 2 ~~p~~~~~di~G~~~~k~~l~~~i~-~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~ 80 (247)
T d1ixza_ 2 EAPKVTFKDVAGAEEAKEELKEIVE-FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 80 (247)
T ss_dssp CCCSCCGGGCCSCHHHHHHHHHHHH-HHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CCCCCcHHHHccHHHHHHHHHHHHH-HHHCHHHHHHcCCCCCceEEEecCCCCChhHHHHHHHHHcCCCEEEEEhHHhhh
Confidence 5799999999999999999998765 589999999876 678999999999
Q ss_pred --CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCC--CCCchhhHHHHHHHHHHH
Q 006411 454 --IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKS--DGEHESSRRLKTQFLIEM 529 (646)
Q Consensus 454 --vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s--~~~~e~s~rilneLL~eL 529 (646)
+|+++++++.+|+.|+.++||||||||||+|+. +|.. ...+....+++++||.+|
T Consensus 81 ~~~g~~~~~l~~~f~~a~~~~p~Ii~iDeid~l~~---------------------~r~~~~~~~~~~~~~~~~~ll~~~ 139 (247)
T d1ixza_ 81 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGR---------------------KRGSGVGGGNDEREQTLNQLLVEM 139 (247)
T ss_dssp SCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC------------------------------CHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHcCCEEEEEEChhhhCc---------------------cCCCCCCCCcHHHHHHHHHHHHHh
Confidence 889999999999999999999999999999987 3322 223345678999999999
Q ss_pred cCCCCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC------------------------------CCcHHHH
Q 006411 530 EGFDSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS------------------------------GYSGSDM 577 (646)
Q Consensus 530 DGl~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~------------------------------GySGADL 577 (646)
|++.. ..+|+||+|||+|+.||++++| |||++|+|++|+. ||||+||
T Consensus 140 d~~~~-~~~vivi~tTn~~~~ld~al~R~~Rf~~~i~~~~P~~~eR~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di 218 (247)
T d1ixza_ 140 DGFEK-DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADL 218 (247)
T ss_dssp HTCCT-TCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHH
T ss_pred hCCCC-CCCEEEEEeCCCccccCHhHcCCCCCcEEEEECCcCHHHHHHHHHHHhcccCCccccCHHHHHHHCCCCCHHHH
Confidence 99976 6789999999999999999998 9999999999975 9999999
Q ss_pred HHHHHHHhhhHHHHHHHhchhhhhhcccCCCCccHHHHHHHHh
Q 006411 578 KNLVKEASMGPLREALRQGIEITRLQKEDMQPVTLQDFENALP 620 (646)
Q Consensus 578 ~~Lc~eAa~~Airr~l~~~~~~~~~~~~~~~~Vt~eDFe~AL~ 620 (646)
.++|++|++.|+++ ....|+++||+.|+.
T Consensus 219 ~~lv~~A~l~a~~~--------------~~~~i~~~d~~~A~~ 247 (247)
T d1ixza_ 219 ENLLNEAALLAARE--------------GRRKITMKDLEEAAS 247 (247)
T ss_dssp HHHHHHHHHHHHHT--------------TCSSBCHHHHHHHTC
T ss_pred HHHHHHHHHHHHHc--------------CCCCcCHHHHHHhhC
Confidence 99999999988765 235799999999973
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=1.5e-32 Score=276.71 Aligned_cols=197 Identities=35% Similarity=0.641 Sum_probs=150.1
Q ss_pred CCCcccccccChHHHHHHHHHHHHhhccCccccccCC-CCCccccccCCC------------------------------
Q 006411 405 DPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCR-SPGKGLLLFGPP------------------------------ 453 (646)
Q Consensus 405 ~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~-~PprGVLLyGPP------------------------------ 453 (646)
.|++||+||+|++++|++|.+.|.+|+.+|+.|...+ .+++||||||||
T Consensus 1 ~p~~~f~di~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~Gp~GtGKT~l~~ala~~~~~~~~~~~~~~l~~~ 80 (265)
T d1r7ra3 1 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 80 (265)
T ss_dssp CCCCSCSSCSSSSCCCCHHHHHTHHHHHCHHHHHHCCCCCCCEEEEBCCTTSSHHHHHHHHHHHTTCEEEEECHHHHHTS
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhCCCCCCCeEEEECCCCCcchhHHHHHHHHhCCcEEEEEHHHhhhc
Confidence 4899999999999999999999999999999999877 678999999999
Q ss_pred -CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCC
Q 006411 454 -IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGF 532 (646)
Q Consensus 454 -vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl 532 (646)
.|+++..++.+|..|+.++||||||||||.++.++ ............++++.||++||++
T Consensus 81 ~~~~~~~~l~~~f~~A~~~~p~il~ideid~l~~~~-------------------~~~~~~~~~~~~~~~~~ll~~l~~~ 141 (265)
T d1r7ra3 81 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKAR-------------------GGNIGDGGGAADRVINQILTEMDGM 141 (265)
T ss_dssp CTTTHHHHHHHHHHHHHHTCSEEEEESSGGGTCCHH-------------------HHCCCTTHHHHHHHHHHHHHTCC--
T ss_pred cccchHHHHHHHHHHHHhcCCcceeHHhhhhccccC-------------------CCcCCCCcHHHHHHHHHHHHHhhCc
Confidence 77889999999999999999999999999999721 1112233345678999999999999
Q ss_pred CCCCCcEEEEEecCCCCcCCHHHHh--ccccEEEeCCCCC------------------------------CCcHHHHHHH
Q 006411 533 DSGSEQILLVGATNRPQELDEAARR--RLTKRLYIPLPSS------------------------------GYSGSDMKNL 580 (646)
Q Consensus 533 ~~~~~~VlVIaATNrPd~LDpALlR--RFDr~I~IplPd~------------------------------GySGADL~~L 580 (646)
.. ..+|+||||||+|+.||+|++| ||+++|+|++|+. ||||+||..+
T Consensus 142 ~~-~~~v~vi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~l~~la~~t~g~s~~di~~l 220 (265)
T d1r7ra3 142 ST-KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEI 220 (265)
T ss_dssp -----CCEEEECCBSCTTTSCGGGSSTTSEEEEECCCCCCHHHHHHHHHHTTCC----CCCCHHHHHHHCSSCCHHHHHH
T ss_pred CC-CCCEEEEEeCCCchhCCHHHhCCCCccEEEEecchHHHHHHHHHHHHhccCCchhhhhHHHHHhcCCCCCHHHHHHH
Confidence 77 5679999999999999999998 9999999999986 9999999999
Q ss_pred HHHHhhhHHHHHHHhchhhhhh--cccCCCCccHHHHHHHHhh
Q 006411 581 VKEASMGPLREALRQGIEITRL--QKEDMQPVTLQDFENALPQ 621 (646)
Q Consensus 581 c~eAa~~Airr~l~~~~~~~~~--~~~~~~~Vt~eDFe~AL~k 621 (646)
|++|.+.|+++.+......... .......++.+||..++.+
T Consensus 221 v~~A~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~i~~ 263 (265)
T d1r7ra3 221 CQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRR 263 (265)
T ss_dssp HHHHHHHHHHHC------------------------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCccccccccccchHHHcc
Confidence 9999999998855432211111 1122234566677766653
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=99.77 E-value=3e-22 Score=207.72 Aligned_cols=136 Identities=13% Similarity=0.129 Sum_probs=104.7
Q ss_pred hhccCccccccCC-CCCccccc-cCCC---------------------------------CchHHHHHHHHHHHhhhcCC
Q 006411 429 WPLLRPDIFKGCR-SPGKGLLL-FGPP---------------------------------IGEGEKLVRALFGVASCRQP 473 (646)
Q Consensus 429 lPL~~pelf~~~~-~PprGVLL-yGPP---------------------------------vGesek~Vr~lF~~Ar~~aP 473 (646)
+|...|.+++.++ .+++|+|| |||| +|++++.++.+|+.|+. |
T Consensus 106 ~~~~~~~~~~~~~~~~~~g~~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~~~~~~~~~G~~e~~~~~~f~~a~~--~ 183 (321)
T d1w44a_ 106 LVGCSPVVAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQ--H 183 (321)
T ss_dssp CCSBCCEEEEETTEEEESEEEEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHH--C
T ss_pred ccccchHHHHHhhcccCCceEEEECCCCccHHHHHHHHHHHhcCCCCeEEEEhhHhhhcccchHHHHHHHHHHHHhh--c
Confidence 5667888888876 67889776 8999 89999999999999985 8
Q ss_pred eeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcC--
Q 006411 474 AVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQEL-- 551 (646)
Q Consensus 474 sIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~L-- 551 (646)
|||||||||++++ .|..+..+....+++++||++|||+.. ..+|+|||||| |+.+
T Consensus 184 ~ilf~DEid~~~~---------------------~r~~~~~~~~~~r~v~~lL~e~dg~~~-~~~v~viaatN-~~~~~~ 240 (321)
T d1w44a_ 184 RVIVIDSLKNVIG---------------------AAGGNTTSGGISRGAFDLLSDIGAMAA-SRGCVVIASLN-PTSNDD 240 (321)
T ss_dssp SEEEEECCTTTC--------------------------------CCHHHHHHHHHHHHHHH-HHTCEEEEECC-CCCCCH
T ss_pred cEEEeehhhhhcc---------------------ccccCCCCCcchhhhhhhhhhcccccc-CCCeEEEEeCC-Cccccc
Confidence 9999999999998 554444444556899999999999987 56899999999 5544
Q ss_pred --CHHHHh--ccccEEEeCCCCC------------CC--cHHHHHHHHHHHhhhHH
Q 006411 552 --DEAARR--RLTKRLYIPLPSS------------GY--SGSDMKNLVKEASMGPL 589 (646)
Q Consensus 552 --DpALlR--RFDr~I~IplPd~------------Gy--SGADL~~Lc~eAa~~Ai 589 (646)
|++++| |||+.|+++.||. || +++++..++.+++..++
T Consensus 241 ~i~~~~~r~~Rf~~~v~v~~pd~~~r~~il~~~~~~~~~~~~~l~~~~~~~a~la~ 296 (321)
T d1w44a_ 241 KIVELVKEASRSNSTSLVISTDVDGEWQVLTRTGEGLQRLTHTLQTSYGEHSVLTI 296 (321)
T ss_dssp HHHHHHHHHHHHSCSEEEEECSSTTEEEEEEECBTTCCEEEEEEEEEECGGGCEEE
T ss_pred chhhhhhccCcccceeecCCCChHHHHHHHHHhccCccccchhhhhccCHHHHHHH
Confidence 555567 9999999999987 66 57777777766665443
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.74 E-value=5e-19 Score=175.88 Aligned_cols=106 Identities=23% Similarity=0.336 Sum_probs=86.8
Q ss_pred CCCCccccccCCC-------------------------------Cch-HHHHHHHHHHHhhhcCCeeeeehhhhHHhhhc
Q 006411 441 RSPGKGLLLFGPP-------------------------------IGE-GEKLVRALFGVASCRQPAVIFVDEIDSLLSQM 488 (646)
Q Consensus 441 ~~PprGVLLyGPP-------------------------------vGe-sek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~ 488 (646)
..|++|||||||| .+. ..+.++.+|+.|++.+||||||||||.++.
T Consensus 37 ~~p~~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~g~~~~~~~~~i~~if~~A~~~~p~il~iDEid~l~~-- 114 (246)
T d1d2na_ 37 RTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLD-- 114 (246)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTT--
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHhhcccccccccccccccccccccchhhhhhhhhhhhhhcccceeehhhhhhHhh--
Confidence 4678999999999 112 246899999999999999999999999987
Q ss_pred ccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHh-ccccEEEeCC
Q 006411 489 LPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARR-RLTKRLYIPL 567 (646)
Q Consensus 489 ~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlR-RFDr~I~Ipl 567 (646)
.+..+ ....++++++|+..|++......+|+||||||+|+.||++.++ ||+++|++|.
T Consensus 115 -------------------~~~~~--~~~~~~~~~~ll~~l~~~~~~~~~v~vi~tTn~~~~ld~~~~~~rF~~~i~~P~ 173 (246)
T d1d2na_ 115 -------------------YVPIG--PRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPN 173 (246)
T ss_dssp -------------------CBTTT--TBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCC
T ss_pred -------------------hcccc--cchhHHHHHHHHHHhcCCCccccceeeeeccCChhhccchhhcCccceEEecCC
Confidence 33222 2234688999999999998766789999999999999987554 9999999976
Q ss_pred CC
Q 006411 568 PS 569 (646)
Q Consensus 568 Pd 569 (646)
+.
T Consensus 174 ~~ 175 (246)
T d1d2na_ 174 IA 175 (246)
T ss_dssp EE
T ss_pred ch
Confidence 65
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=99.62 E-value=1.6e-16 Score=162.01 Aligned_cols=138 Identities=25% Similarity=0.376 Sum_probs=111.7
Q ss_pred cccChHHHHHHHHHHHHhhccCccccccCC--CCCccccccCCC---------------------------------Cch
Q 006411 412 DIAGLEHAKKCVMEMVIWPLLRPDIFKGCR--SPGKGLLLFGPP---------------------------------IGE 456 (646)
Q Consensus 412 DIgGle~~K~~L~E~V~lPL~~pelf~~~~--~PprGVLLyGPP---------------------------------vGe 456 (646)
.|+|.+++|+.|.++|..|+.+..+..... .|++|+|||||| .|+
T Consensus 15 ~ViGQd~A~~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GPpG~GKT~lAkalA~~~~~~~~~i~~s~~~~~~~~~~~ 94 (309)
T d1ofha_ 15 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 94 (309)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGS
T ss_pred cccChHHHHHHHHHHHHHHHHHhccCCCCccCCCCceEEEECCCCCCHHHHHHHHhhccccchhcccccccccceeEeee
Confidence 489999999999999988887777665442 578999999999 677
Q ss_pred HHHHHHHHHHHhhh-----cCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcC
Q 006411 457 GEKLVRALFGVASC-----RQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEG 531 (646)
Q Consensus 457 sek~Vr~lF~~Ar~-----~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDG 531 (646)
.++.++.+|..|+. .+||||||||||.+++ ++...........++++||..|||
T Consensus 95 ~~~~~~~~f~~a~~~~~~~~~~~IIf~DEIdki~~---------------------~~~~~~~~~~~~gv~~~LL~~~dg 153 (309)
T d1ofha_ 95 VDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICK---------------------KGEYSGADVSREGVQRDLLPLVEG 153 (309)
T ss_dssp TTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSC---------------------CSSCCSSHHHHHHHHHHHHHHHHC
T ss_pred ccccccccchhhhcccccccCCceEEehhhhhhhh---------------------hccCcccchhhhHHHHHhhHHhcC
Confidence 88899999999865 3699999999999987 443333333345688999999998
Q ss_pred CCCC-------CCcEEEEEe----cCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 532 FDSG-------SEQILLVGA----TNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 532 l~~~-------~~~VlVIaA----TNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
.... ..+|++|++ +|+|+.++|+++.||+.++.++.|+.
T Consensus 154 ~~~~~~~~~i~~s~ilfi~~ga~~~~~~~~~~p~l~~R~~~~i~~~~~~~ 203 (309)
T d1ofha_ 154 STVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSA 203 (309)
T ss_dssp CEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCH
T ss_pred CEEecCCeEEEccceeEEeccchhhcCcccchhhhhhhhheeeeccCCCH
Confidence 6421 235777776 78999999999999999999999875
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=99.32 E-value=1.5e-11 Score=117.87 Aligned_cols=139 Identities=22% Similarity=0.183 Sum_probs=85.0
Q ss_pred CcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhh-----------------
Q 006411 407 HVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVAS----------------- 469 (646)
Q Consensus 407 ~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar----------------- 469 (646)
+-+|+||+|.+++++.|++++..+..+ +.++.++||||||+.++...++.+-....
T Consensus 5 P~~~~divGqe~~~~~l~~~i~~~~~~-------~~~~~~~L~~GPpGtGKT~lA~~la~~~~~~~~~~~~~~~~~~~~~ 77 (238)
T d1in4a2 5 PKSLDEFIGQENVKKKLSLALEAAKMR-------GEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDM 77 (238)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHHHHHH-------TCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHH
T ss_pred CCcHHHcCChHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCcHHHHHHHHHhccCCCcccccCcccccHHHH
Confidence 358999999999999999999764322 23456899999995545444444433221
Q ss_pred ------hcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCCCCCCCcEEEEE
Q 006411 470 ------CRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVG 543 (646)
Q Consensus 470 ------~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl~~~~~~VlVIa 543 (646)
....+++||||+|.+.... +..+...- .......... ...... .+.....++++|+
T Consensus 78 ~~~~~~~~~~~~~~ide~~~~~~~~-------~~~l~~~~---~~~~~~~~~~-----~~~~~~---~~~~~~~~~~~I~ 139 (238)
T d1in4a2 78 AAILTSLERGDVLFIDEIHRLNKAV-------EELLYSAI---EDFQIDIMIG-----KGPSAK---SIRIDIQPFTLVG 139 (238)
T ss_dssp HHHHHHCCTTCEEEEETGGGCCHHH-------HHHHHHHH---HTSCCCC-----------------------CCCEEEE
T ss_pred HHHHHhhccCCchHHHHHHHhhhHH-------Hhhcccce---eeeeeeeeec-----Cccccc---ccccCCCCeEEEE
Confidence 2246899999999885410 00000000 0000000000 000000 0111134789999
Q ss_pred ecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 544 ATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 544 ATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
|||++..+++++++||...+.++.|+.
T Consensus 140 at~~~~~~~~~~~~r~~~~~~~~~~~~ 166 (238)
T d1in4a2 140 ATTRSGLLSSPLRSRFGIILELDFYTV 166 (238)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCH
T ss_pred ecCCCccccccceeeeeEEEEecCCCH
Confidence 999999999999999999999999975
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=99.10 E-value=4e-10 Score=107.89 Aligned_cols=173 Identities=21% Similarity=0.220 Sum_probs=108.6
Q ss_pred CcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhc---------------
Q 006411 407 HVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCR--------------- 471 (646)
Q Consensus 407 ~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~--------------- 471 (646)
+.+|+||+|.+++++.|++++..... ...++.++||||||+.++...++.+-......
T Consensus 5 P~~~ddivGq~~~~~~L~~~i~~~~~-------~~~~~~~~Ll~GPpG~GKTtla~~la~~~~~~~~~~~~~~~~~~~~~ 77 (239)
T d1ixsb2 5 PKTLDEYIGQERLKQKLRVYLEAAKA-------RKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDL 77 (239)
T ss_dssp CCSGGGSCSCHHHHHHHHHHHHHHTT-------SSSCCCCEEEECCTTSCHHHHHHHHHHHHTCCEEEEETTTCCSHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHh-------cCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCeEeccCCccccchhh
Confidence 56899999999999999999876432 23456899999999555555555553332111
Q ss_pred ---------CCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHHcCC----------
Q 006411 472 ---------QPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEMEGF---------- 532 (646)
Q Consensus 472 ---------aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eLDGl---------- 532 (646)
..+|+||||+|.+... ....++..|+..
T Consensus 78 ~~~~~~~~~~~~i~~iDe~~~~~~~---------------------------------~~~~l~~~~e~~~~~~~~~~~~ 124 (239)
T d1ixsb2 78 AAILANSLEEGDILFIDEIHRLSRQ---------------------------------AEEHLYPAMEDFVMDIVIGQGP 124 (239)
T ss_dssp HHHHHTTCCTTCEEEEETGGGCCHH---------------------------------HHHHHHHHHHHSEEEEECSCTT
T ss_pred HHHHHhhccCCCeeeeecccccchh---------------------------------HHHhhhhhhhhhhhhhhhccch
Confidence 4679999999987541 011122222210
Q ss_pred -----CCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC----------------CCcHHHHHHHHHHHhhhHHHH
Q 006411 533 -----DSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS----------------GYSGSDMKNLVKEASMGPLRE 591 (646)
Q Consensus 533 -----~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~----------------GySGADL~~Lc~eAa~~Airr 591 (646)
.....++++|++||++..++++.++|+...+.+..|+. -++...+..++..+.- -+|.
T Consensus 125 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~l~~ia~~s~g-d~R~ 203 (239)
T d1ixsb2 125 AARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRV 203 (239)
T ss_dssp CCCEEEEECCCCEEEEEESCCSSCSCGGGGGCSEEEECCCCCHHHHHHHHHHHHGGGCCCBCHHHHHHHHHHTTS-SHHH
T ss_pred hhhhcccCCCCEEEEeeccCcccccchhhcccceeeEeeccChhhhhHHHHHHHHHhCCccchHHHHHHHHHcCC-CHHH
Confidence 01134688999999999999999999999999999875 3454555555544321 1121
Q ss_pred HH---HhchhhhhhcccCCCCccHHHHHHHHhhc
Q 006411 592 AL---RQGIEITRLQKEDMQPVTLQDFENALPQV 622 (646)
Q Consensus 592 ~l---~~~~~~~~~~~~~~~~Vt~eDFe~AL~kv 622 (646)
++ +... ..........|+.++..+++..+
T Consensus 204 a~~~l~~~~--~~a~~~~~~~It~~~~~~~l~~l 235 (239)
T d1ixsb2 204 AKRLFRRVR--DFAQVAGEEVITRERALEALAAL 235 (239)
T ss_dssp HHHHHHHHH--HHHTTSCCSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHH--HHHHHhCCCCcCHHHHHHHHhhh
Confidence 11 1100 00122334568888888888654
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=98.90 E-value=1.3e-08 Score=98.40 Aligned_cols=120 Identities=19% Similarity=0.192 Sum_probs=84.2
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhh------------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASC------------ 470 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~------------ 470 (646)
+++.+-+|+||+|.+++++.|+.++.. +..|.++||||||+.+....++.+......
T Consensus 4 ~KyrP~~~~dlig~~~~~~~L~~~i~~-----------~~~~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~~~~~~~~~~~~ 72 (239)
T d1njfa_ 4 RKWRPQTFADVVGQEHVLTALANGLSL-----------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC 72 (239)
T ss_dssp HHTCCSSGGGSCSCHHHHHHHHHHHHT-----------TCCCSEEEEECSTTSSHHHHHHHHHHHHHCTTCSCSSCCSCS
T ss_pred hhhCCCCHHHccChHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCccccccCccccc
Confidence 345667999999999999999988754 234678999999944444444443332211
Q ss_pred -----------------------------------------cCCeeeeehhhhHHhhhcccccccchhhhhhhhhhcccc
Q 006411 471 -----------------------------------------RQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQR 509 (646)
Q Consensus 471 -----------------------------------------~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R 509 (646)
....||||||+|.|-
T Consensus 73 ~~~~~i~~~~~~~~~~~~~~~~~~i~~ir~~~~~~~~~~~~~~~kviiIde~d~l~------------------------ 128 (239)
T d1njfa_ 73 DNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS------------------------ 128 (239)
T ss_dssp HHHHHHHHTCCTTEEEEETTCSSSHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC------------------------
T ss_pred hHHHHHHcCCCCeEEEecchhcCCHHHHHHHHHHHHhccccCCCEEEEEECcccCC------------------------
Confidence 012255555555542
Q ss_pred CCCCCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 510 KSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 510 ~s~~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
....+.|+..|+... .++.+|++||.++.|.+++++|+ ..+.++.|+.
T Consensus 129 ---------~~~q~~Llk~lE~~~---~~~~~il~tn~~~~i~~~i~SRc-~~i~~~~~~~ 176 (239)
T d1njfa_ 129 ---------RHSFNALLKTLEEPP---EHVKFLLATTDPQKLPVTILSRC-LQFHLKALDV 176 (239)
T ss_dssp ---------HHHHHHHHHHHHSCC---TTEEEEEEESCGGGSCHHHHTTS-EEEECCCCCH
T ss_pred ---------HHHHHHHHHHHhcCC---CCeEEEEEcCCccccChhHhhhh-cccccccCcH
Confidence 234577888888643 46889999999999999999999 5678888764
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.82 E-value=4.6e-08 Score=92.39 Aligned_cols=167 Identities=17% Similarity=0.164 Sum_probs=105.1
Q ss_pred CCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhh-------------
Q 006411 404 RDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASC------------- 470 (646)
Q Consensus 404 ~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~------------- 470 (646)
++.+-+|+||+|.+++++.|+.++.. +.. ..+||||||+.+....++.+-.....
T Consensus 7 kyrP~~~~divg~~~~~~~L~~~i~~-----------~~~-~~lLl~Gp~G~GKttl~~~la~~l~~~~~~~~~~e~~~~ 74 (227)
T d1sxjc2 7 KYRPETLDEVYGQNEVITTVRKFVDE-----------GKL-PHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNAS 74 (227)
T ss_dssp HTCCSSGGGCCSCHHHHHHHHHHHHT-----------TCC-CCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTT
T ss_pred hhCCCCHHHccCcHHHHHHHHHHHHc-----------CCC-CeEEEECCCCCChhHHHHHHHHHhhcCCCcceeEEeccc
Confidence 44567999999999999999998754 112 25999999955555555555433211
Q ss_pred -----------------------cCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHH
Q 006411 471 -----------------------RQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLI 527 (646)
Q Consensus 471 -----------------------~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~ 527 (646)
....||+|||+|.+.. ...+.|+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~kiiiiDe~d~~~~---------------------------------~~~~~Ll~ 121 (227)
T d1sxjc2 75 DDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN---------------------------------AAQNALRR 121 (227)
T ss_dssp SCCSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH---------------------------------HHHHHHHH
T ss_pred ccCCeeeeecchhhccccccccCCCeEEEEEeccccchh---------------------------------hHHHHHHH
Confidence 0234888999887754 12455666
Q ss_pred HHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC----------------CCcHHHHHHHHHHHhhhHHHH
Q 006411 528 EMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS----------------GYSGSDMKNLVKEASMGPLRE 591 (646)
Q Consensus 528 eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~----------------GySGADL~~Lc~eAa~~Airr 591 (646)
.|+... ..++++++||.+..+++++++|+. .+.|+.|+. .++...+..+++.+ ..-+|+
T Consensus 122 ~le~~~---~~~~~~~~~~~~~~i~~~i~sr~~-~i~~~~~~~~~i~~~l~~I~~~e~i~i~~~~l~~i~~~s-~Gd~R~ 196 (227)
T d1sxjc2 122 VIERYT---KNTRFCVLANYAHKLTPALLSQCT-RFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELS-NGDMRR 196 (227)
T ss_dssp HHHHTT---TTEEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHH-TTCHHH
T ss_pred Hhhhcc---cceeeccccCcHHHhHHHHHHHHh-hhccccccccccccccccccccccccCCHHHHHHHHHHc-CCcHHH
Confidence 676553 468999999999999999999984 567887764 24455555555443 223333
Q ss_pred HHHhchh-hhhhcccCCCCccHHHHHHHHh
Q 006411 592 ALRQGIE-ITRLQKEDMQPVTLQDFENALP 620 (646)
Q Consensus 592 ~l~~~~~-~~~~~~~~~~~Vt~eDFe~AL~ 620 (646)
++..--. .......+...|+.+++.+++.
T Consensus 197 ain~Lq~~~~~~~~~~~~~It~~~v~e~~g 226 (227)
T d1sxjc2 197 VLNVLQSCKATLDNPDEDEISDDVIYECCG 226 (227)
T ss_dssp HHHHTTTTTTTTCSSSCCCBCHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCCCCeeCHHHHHHHhC
Confidence 3321000 0111223345678888777753
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.67 E-value=7.2e-08 Score=91.92 Aligned_cols=132 Identities=13% Similarity=0.116 Sum_probs=83.7
Q ss_pred CCCCcccccccChHHHHHHHHHHHHhhc-cCccccc---cC-CCCCccccccCCCCchHHHHHHHHHHHhhh--------
Q 006411 404 RDPHVRWDDIAGLEHAKKCVMEMVIWPL-LRPDIFK---GC-RSPGKGLLLFGPPIGEGEKLVRALFGVASC-------- 470 (646)
Q Consensus 404 ~~p~VsfdDIgGle~~K~~L~E~V~lPL-~~pelf~---~~-~~PprGVLLyGPPvGesek~Vr~lF~~Ar~-------- 470 (646)
++.+-+|+||+|.++++++|++++.... ..+..+. .. ..+.+++||||||+.+....++.+......
T Consensus 7 ky~P~~~~dlig~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~lll~GPpG~GKTt~a~~la~~~~~~~~~~~~~ 86 (253)
T d1sxja2 7 KYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNAS 86 (253)
T ss_dssp HTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTT
T ss_pred CcCCCCHHHhcCCHHHHHHHHHHHHhhhhcchhhhhhhcccCCCCCceEEEECCCCCCHHHHHHHHHHHHHhhhhccccc
Confidence 4556799999999999999999886522 1122221 11 244578999999966666666666443211
Q ss_pred -----------------------------------cCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCc
Q 006411 471 -----------------------------------RQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEH 515 (646)
Q Consensus 471 -----------------------------------~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~ 515 (646)
..+.||++||+|.+.. .
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ide~~~~~~---------------------~------- 138 (253)
T d1sxja2 87 DVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSG---------------------G------- 138 (253)
T ss_dssp SCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCT---------------------T-------
T ss_pred cchhhHHHHHHHHHHhhcchhhhhhhhhhhcccccccceEEEeeecccccc---------------------c-------
Confidence 0244677777776643 1
Q ss_pred hhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 516 ESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 516 e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
.+.....++..+.... ..++++++++....+++ ++|+...|+|+.|+.
T Consensus 139 --~~~~~~~~~~~~~~~~---~~ii~i~~~~~~~~~~~--l~~~~~~i~f~~~~~ 186 (253)
T d1sxja2 139 --DRGGVGQLAQFCRKTS---TPLILICNERNLPKMRP--FDRVCLDIQFRRPDA 186 (253)
T ss_dssp --STTHHHHHHHHHHHCS---SCEEEEESCTTSSTTGG--GTTTSEEEECCCCCH
T ss_pred --hhhhhHHHhhhhcccc---ccccccccccccccccc--ccceeeeeeccccch
Confidence 0122344554444433 35777777777777774 567778999999975
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.65 E-value=1.1e-07 Score=90.03 Aligned_cols=119 Identities=24% Similarity=0.218 Sum_probs=84.9
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhh-------------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVAS------------- 469 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar------------- 469 (646)
+++.+-+|+||+|.+++++.|+.++... ....+||||||+.+....++.+-+...
T Consensus 16 ~ky~P~~~~diig~~~~~~~l~~~i~~~------------~~~~lll~Gp~G~GKTtla~~iak~l~~~~~~~~~~e~n~ 83 (231)
T d1iqpa2 16 EKYRPQRLDDIVGQEHIVKRLKHYVKTG------------SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNA 83 (231)
T ss_dssp HHTCCCSTTTCCSCHHHHHHHHHHHHHT------------CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEET
T ss_pred HHhCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEECCCCCcHHHHHHHHHHHHHhcccCCCeeEEec
Confidence 4556679999999999999999988541 124699999995555555544433221
Q ss_pred -----------------------hcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHH
Q 006411 470 -----------------------CRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFL 526 (646)
Q Consensus 470 -----------------------~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL 526 (646)
...+.||+|||+|.+.. ...+.|+
T Consensus 84 s~~~~~~~~~~~~~~~~~~~~~~~~~~~iilide~d~~~~---------------------------------~~~~~ll 130 (231)
T d1iqpa2 84 SDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQ---------------------------------DAQQALR 130 (231)
T ss_dssp TCHHHHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH---------------------------------HHHHHHH
T ss_pred CcccchhHHHHHHHHHHhhhhccCCCceEEeehhhhhcch---------------------------------hHHHHHh
Confidence 12467888888887764 1233456
Q ss_pred HHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 527 IEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 527 ~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
..|+... .++.+|++||.+..+++++++|+. .+.++.|+.
T Consensus 131 ~~l~~~~---~~~~~i~~~n~~~~i~~~l~sR~~-~i~~~~~~~ 170 (231)
T d1iqpa2 131 RTMEMFS---SNVRFILSCNYSSKIIEPIQSRCA-IFRFRPLRD 170 (231)
T ss_dssp HHHHHTT---TTEEEEEEESCGGGSCHHHHHTEE-EEECCCCCH
T ss_pred hhcccCC---cceEEEeccCChhhchHhHhCccc-cccccccch
Confidence 6665443 368999999999999999999985 478888865
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=98.61 E-value=1.8e-07 Score=88.76 Aligned_cols=136 Identities=13% Similarity=0.023 Sum_probs=85.0
Q ss_pred CcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhh-----------------
Q 006411 407 HVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVAS----------------- 469 (646)
Q Consensus 407 ~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar----------------- 469 (646)
....+.|.|-+..++.|.+.+..++.+...- ..++..++|||||+.++...++.+++...
T Consensus 12 ~~~P~~~~~Re~e~~~l~~~l~~~~~~~~~~---~~~~~~l~l~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~~~ 88 (287)
T d1w5sa2 12 NYIPPELRVRRGEAEALARIYLNRLLSGAGL---SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNA 88 (287)
T ss_dssp TCCCSSCSSSCHHHHHHHHHHHHHHHTSSCB---CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEG
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHcCCCC---CCcceEEEeECCCCCCHHHHHHHHHHHHHhhcccccCCceeeeecc
Confidence 3445788888888888888877766433211 12234578899996666666666654421
Q ss_pred -----------------------------------------hcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccc
Q 006411 470 -----------------------------------------CRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQ 508 (646)
Q Consensus 470 -----------------------------------------~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~ 508 (646)
...+.++++||+|.+.. .
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iide~d~l~~---------------------~ 147 (287)
T d1w5sa2 89 FNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLS---------------------S 147 (287)
T ss_dssp GGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHS---------------------C
T ss_pred ccccchhhHHHHHhhhcccccccccchHHHHHHHHHHHHHhccCccccceeEEEEecc---------------------c
Confidence 12455788899998875 1
Q ss_pred cCCCCCchhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcC------CHHHHhccccEEEeCCCCC
Q 006411 509 RKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQEL------DEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 509 R~s~~~~e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~L------DpALlRRFDr~I~IplPd~ 570 (646)
. .........+..++..+..... ...+.+|+.+|.++.. ++++++||..+++++.++.
T Consensus 148 ~---~~~~~~~~~l~~l~~~l~~~~~-~~~~~~i~i~~~~~~~~~~~~~~~~~~~r~~~~i~f~~y~~ 211 (287)
T d1w5sa2 148 P---RIAAEDLYTLLRVHEEIPSRDG-VNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKS 211 (287)
T ss_dssp T---TSCHHHHHHHHTHHHHSCCTTS-CCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCH
T ss_pred c---ccchhHHHHHHHHHHhcchhhc-ccceeEEeecccHHHHHHHHhhccchhcccceeeeccCCcH
Confidence 1 1222223334444555555544 4567777777766544 4677779999999999865
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.59 E-value=6.2e-08 Score=92.16 Aligned_cols=52 Identities=17% Similarity=0.292 Sum_probs=39.1
Q ss_pred HHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCCCCcHHHHHHHH
Q 006411 522 KTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSSGYSGSDMKNLV 581 (646)
Q Consensus 522 lneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~GySGADL~~Lc 581 (646)
.+.|+..++.. ..++.+|++||.++.|++++++|| ..|.|+.|+. .++..++
T Consensus 148 ~~~l~~~~e~~---~~~~~~Il~tn~~~~i~~~l~sR~-~~i~~~~~~~----~~~~~~l 199 (252)
T d1sxje2 148 QAALRRTMEKY---SKNIRLIMVCDSMSPIIAPIKSQC-LLIRCPAPSD----SEISTIL 199 (252)
T ss_dssp HHHHHHHHHHS---TTTEEEEEEESCSCSSCHHHHTTS-EEEECCCCCH----HHHHHHH
T ss_pred chhhhcccccc---cccccceeeeccccchhhhhhcch-heeeecccch----hhHHHHH
Confidence 45566666654 346889999999999999999999 5789998865 4444444
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=98.48 E-value=6.3e-07 Score=84.40 Aligned_cols=61 Identities=15% Similarity=0.050 Sum_probs=46.2
Q ss_pred CCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhc
Q 006411 405 DPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCR 471 (646)
Q Consensus 405 ~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~ 471 (646)
.|....+.++|-+..++.|.+++...+..+ +.++.++||||||+.++...++.+.+.....
T Consensus 10 ~~~y~p~~l~~Re~ei~~l~~~l~~~l~~~------~~~~~~lll~GppGtGKT~l~~~l~~~l~~~ 70 (276)
T d1fnna2 10 SPSYVPKRLPHREQQLQQLDILLGNWLRNP------GHHYPRATLLGRPGTGKTVTLRKLWELYKDK 70 (276)
T ss_dssp STTCCCSCCTTCHHHHHHHHHHHHHHHHST------TSSCCEEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhCC------CCCCCceEEECCCCCCHHHHHHHHHHHHhcc
Confidence 455666789999999999988876544333 3467899999999777788888888776543
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.41 E-value=8.5e-07 Score=83.32 Aligned_cols=119 Identities=15% Similarity=0.174 Sum_probs=80.7
Q ss_pred cCCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhh------------
Q 006411 403 DRDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASC------------ 470 (646)
Q Consensus 403 ~~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~------------ 470 (646)
+++.+.+|+||+|.+++++.|+.++.. .. ...+||||||+.++...++.+-+....
T Consensus 4 ~ky~P~~~~diig~~~~~~~l~~~i~~-----------~~-~~~lll~Gp~G~GKTtl~~~i~~~l~~~~~~~~~~~~~~ 71 (237)
T d1sxjd2 4 EKYRPKNLDEVTAQDHAVTVLKKTLKS-----------AN-LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELN 71 (237)
T ss_dssp HHTCCSSTTTCCSCCTTHHHHHHHTTC-----------TT-CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEEC
T ss_pred hhhCCCCHHHccCcHHHHHHHHHHHHc-----------CC-CCeEEEECCCCCChHHHHHHHHHHHcCCcccccchhhee
Confidence 346678999999999999998876642 11 235999999955555555555433210
Q ss_pred -----------------------------------cCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCc
Q 006411 471 -----------------------------------RQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEH 515 (646)
Q Consensus 471 -----------------------------------~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~ 515 (646)
....||||||+|.+..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDe~d~l~~----------------------------- 122 (237)
T d1sxjd2 72 ASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA----------------------------- 122 (237)
T ss_dssp SSSCCCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH-----------------------------
T ss_pred ccccccchHHHHHHHHHhhhhhhhhhHHHHhhccccCceEEEEecccccCH-----------------------------
Confidence 0123788888887754
Q ss_pred hhhHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 516 ESSRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 516 e~s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
...+.|+..++-. .....+|.+|+.++.+.+++++|| ..|.|+.|+.
T Consensus 123 ----~~~~~l~~~~~~~---~~~~~~i~~~~~~~~~~~~l~sr~-~~i~f~~~~~ 169 (237)
T d1sxjd2 123 ----DAQSALRRTMETY---SGVTRFCLICNYVTRIIDPLASQC-SKFRFKALDA 169 (237)
T ss_dssp ----HHHHHHHHHHHHT---TTTEEEEEEESCGGGSCHHHHHHS-EEEECCCCCH
T ss_pred ----HHHHHHhhccccc---cccccccccccccccccccccchh-hhhccccccc
Confidence 1123344444433 246778899999999999999998 6778988875
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=98.37 E-value=2.3e-07 Score=96.15 Aligned_cols=49 Identities=6% Similarity=-0.063 Sum_probs=39.2
Q ss_pred EEEecCCCCcCCHHHHh--ccccEEEeCCCCC-----------------------------CCcHHHHHHHHHHHhhhHH
Q 006411 541 LVGATNRPQELDEAARR--RLTKRLYIPLPSS-----------------------------GYSGSDMKNLVKEASMGPL 589 (646)
Q Consensus 541 VIaATNrPd~LDpALlR--RFDr~I~IplPd~-----------------------------GySGADL~~Lc~eAa~~Ai 589 (646)
+|+|||.+ |.+++| ||++.|++..|+. ||+|+|+..+|++++..+.
T Consensus 259 ~i~ttN~~---~~~~~r~~Rf~~~i~~~~~~~~~~~~~~l~~i~~~~~l~~~~~~L~~li~~~s~~D~~~~i~~~~~~~~ 335 (362)
T d1svma_ 259 GIVTMNEY---SVPKTLQARFVKQIDFRPKDYLKHCLERSEFLLEKRIIQSGIALLLMLIWYRPVAEFAQSIQSRIVEWK 335 (362)
T ss_dssp EEEEECSC---CCCHHHHTTEEEEEECCCCHHHHHHHHTCTHHHHTTCTTCHHHHHHHHHHHSCGGGSCGGGHHHHHHHH
T ss_pred ceeecccc---cccccccccCceEEeecCCCcHHHHHHHHHHHhcccCCCCCHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 78899963 444555 9999999999863 8899999999999887776
Q ss_pred HHH
Q 006411 590 REA 592 (646)
Q Consensus 590 rr~ 592 (646)
++.
T Consensus 336 ~~l 338 (362)
T d1svma_ 336 ERL 338 (362)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.35 E-value=1.1e-06 Score=83.09 Aligned_cols=118 Identities=15% Similarity=0.101 Sum_probs=82.2
Q ss_pred CCCCcccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhh-------------
Q 006411 404 RDPHVRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASC------------- 470 (646)
Q Consensus 404 ~~p~VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~------------- 470 (646)
++.+-+|+||+|.+++++.|+.++.. +. ...+||||||+-++...++.+-.....
T Consensus 8 KyrP~~~~d~ig~~~~~~~L~~~~~~-----------~~-~~~~ll~Gp~G~GKTt~a~~la~~l~~~~~~~~~~~~n~~ 75 (224)
T d1sxjb2 8 KYRPQVLSDIVGNKETIDRLQQIAKD-----------GN-MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNAS 75 (224)
T ss_dssp HTCCSSGGGCCSCTHHHHHHHHHHHS-----------CC-CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTT
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHHc-----------CC-CCeEEEECCCCCCchhhHHHHHHHHhcccccccccccccc
Confidence 45678899999999999999988753 11 235999999955555544443322110
Q ss_pred ------------------------cCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHH
Q 006411 471 ------------------------RQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFL 526 (646)
Q Consensus 471 ------------------------~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL 526 (646)
....||+|||+|.+.. ...+.|+
T Consensus 76 ~~~~~~~i~~~~~~~~~~~~~~~~~~~kviiiDe~d~~~~---------------------------------~~~~~ll 122 (224)
T d1sxjb2 76 DDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA---------------------------------GAQQALR 122 (224)
T ss_dssp SCCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH---------------------------------HHHHTTH
T ss_pred ccCCceehhhHHHHHHHhhccCCCcceEEEEEecccccch---------------------------------hHHHHHh
Confidence 1244888888887754 1224455
Q ss_pred HHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCC
Q 006411 527 IEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 527 ~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~ 570 (646)
..|+... ....+|.+|+....+.+++++|+ ..|.|+.|+.
T Consensus 123 ~~~e~~~---~~~~~i~~~~~~~~i~~~l~sr~-~~i~~~~~~~ 162 (224)
T d1sxjb2 123 RTMELYS---NSTRFAFACNQSNKIIEPLQSQC-AILRYSKLSD 162 (224)
T ss_dssp HHHHHTT---TTEEEEEEESCGGGSCHHHHTTS-EEEECCCCCH
T ss_pred hhccccc---cceeeeeccCchhhhhhHHHHHH-HHhhhcccch
Confidence 5555443 46788899999999999999998 4689999875
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=98.27 E-value=2.1e-06 Score=85.69 Aligned_cols=119 Identities=25% Similarity=0.329 Sum_probs=85.2
Q ss_pred cccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCC------------------------------------
Q 006411 410 WDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP------------------------------------ 453 (646)
Q Consensus 410 fdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPP------------------------------------ 453 (646)
++-++|-++-.+.|.+.+.. .....+||.|||
T Consensus 17 ld~~igRd~Ei~~l~~iL~r------------~~k~n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~l~~~~ 84 (268)
T d1r6bx2 17 IDPLIGREKELERAIQVLCR------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGS 84 (268)
T ss_dssp SCCCCSCHHHHHHHHHHHTS------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC-
T ss_pred CCcccChHHHHHHHHHHHhc------------CccCCcEEECCCCCcHHHHHHHHHHHHHhCCcccccccceeEEeeech
Confidence 45678888777777666533 223678999999
Q ss_pred -------CchHHHHHHHHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHH
Q 006411 454 -------IGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFL 526 (646)
Q Consensus 454 -------vGesek~Vr~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL 526 (646)
.|+-+..++.+++.+......|+||||++.|+. ...+.+.+ . .+-
T Consensus 85 liag~~~~g~~e~r~~~i~~~~~~~~~iIlfiDeih~l~~---------------------~g~~~g~~---~----d~a 136 (268)
T d1r6bx2 85 LLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIG---------------------AGAASGGQ---V----DAA 136 (268)
T ss_dssp --CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTT---------------------SCCSSSCH---H----HHH
T ss_pred HhccCccchhHHHHHHHHHHHhhccCCceEEecchHHHhc---------------------CCCCCCcc---c----cHH
Confidence 788899999999999999999999999999987 21122221 1 122
Q ss_pred HHHcCCCCCCCcEEEEEecCC-----CCcCCHHHHhccccEEEeCCCCC
Q 006411 527 IEMEGFDSGSEQILLVGATNR-----PQELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 527 ~eLDGl~~~~~~VlVIaATNr-----Pd~LDpALlRRFDr~I~IplPd~ 570 (646)
+.|..+-. .+.+-|||||.. ...-|+||.|||.+ |.|..|+.
T Consensus 137 ~~Lkp~L~-rg~i~vIgatT~eey~~~~e~d~al~rrF~~-I~V~Eps~ 183 (268)
T d1r6bx2 137 NLIKPLLS-SGKIRVIGSTTYQEFSNIFEKDRALARRFQK-IDITEPSI 183 (268)
T ss_dssp HHHSSCSS-SCCCEEEEEECHHHHHCCCCCTTSSGGGEEE-EECCCCCH
T ss_pred HHhhHHHh-CCCCeEEEeCCHHHHHHHHhhcHHHHhhhcc-cccCCCCH
Confidence 23333333 467888898864 34679999999976 58999985
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=98.11 E-value=2.3e-05 Score=78.29 Aligned_cols=52 Identities=15% Similarity=0.206 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHcC---------CCC-CCCcEEEEEecCCC-CcCCHHHHhccccEEEeCCCCC
Q 006411 519 RRLKTQFLIEMEG---------FDS-GSEQILLVGATNRP-QELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 519 ~rilneLL~eLDG---------l~~-~~~~VlVIaATNrP-d~LDpALlRRFDr~I~IplPd~ 570 (646)
..+.+.|+.-|+. ... .....+||+|+|-. ..|.++++.||+.+|.++.|..
T Consensus 141 ~~~~~aLl~~me~~~v~i~r~g~~~~~p~~f~liaa~Np~~~~l~~~llDRf~~~i~v~~~~~ 203 (333)
T d1g8pa_ 141 DHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRD 203 (333)
T ss_dssp HHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCS
T ss_pred HHHHHHHhhhhcCCeEEecccCceecCCCCEEEEEecCccccccccchhhhhcceeeccCcch
Confidence 3577888888862 211 01357888888864 4699999999999999998864
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=98.02 E-value=7.9e-06 Score=77.32 Aligned_cols=55 Identities=18% Similarity=0.215 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCCCCCcHHHHHHHH
Q 006411 519 RRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPSSGYSGSDMKNLV 581 (646)
Q Consensus 519 ~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd~GySGADL~~Lc 581 (646)
....+.||..|+... .++++|++||.+..|.|++++|+ ..|.|+.|+. .++...+
T Consensus 122 ~~a~n~Llk~lEep~---~~~~fIl~t~~~~~ll~tI~SRc-~~i~~~~~~~----~~~~~~L 176 (207)
T d1a5ta2 122 DAAANALLKTLEEPP---AETWFFLATREPERLLATLRSRC-RLHYLAPPPE----QYAVTWL 176 (207)
T ss_dssp HHHHHHHHHHHTSCC---TTEEEEEEESCGGGSCHHHHTTS-EEEECCCCCH----HHHHHHH
T ss_pred hhhhHHHHHHHHhhc---ccceeeeeecChhhhhhhhccee-EEEecCCCCH----HHHHHHH
Confidence 346788999998754 47999999999999999999998 6788888764 4444444
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=97.88 E-value=1.3e-05 Score=76.57 Aligned_cols=117 Identities=23% Similarity=0.422 Sum_probs=76.9
Q ss_pred cccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCC------------------------------------
Q 006411 410 WDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP------------------------------------ 453 (646)
Q Consensus 410 fdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPP------------------------------------ 453 (646)
++-++|-++..+.|.+.+.. .....+||.|||
T Consensus 21 ld~~igRd~Ei~~l~~iL~r------------~~k~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~ld~~~ 88 (195)
T d1jbka_ 21 LDPVIGRDEEIRRTIQVLQR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA 88 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTS------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH
T ss_pred CCCCcCcHHHHHHHHHHHhc------------cCCCCeEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCceEEEeeHHH
Confidence 45678888777777665543 123578999999
Q ss_pred -------CchHHHHHHHHHHHhhhcC-CeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHH
Q 006411 454 -------IGEGEKLVRALFGVASCRQ-PAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQF 525 (646)
Q Consensus 454 -------vGesek~Vr~lF~~Ar~~a-PsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneL 525 (646)
.|+-+..++.+++.+.... ..|+|||||..|+. ...+.+.... ..++...
T Consensus 89 LiAg~~~rG~~E~rl~~il~e~~~~~~~iILfIDeih~l~~---------------------~g~~~g~~d~-~~~Lkp~ 146 (195)
T d1jbka_ 89 LVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVG---------------------AGKADGAMDA-GNMLKPA 146 (195)
T ss_dssp HHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT---------------------------CCCC-HHHHHHH
T ss_pred HhccCCccHHHHHHHHHHHHHHhcCCCcEEEEcchHHHHhc---------------------CCCCCCcccH-HHHHHHH
Confidence 4677888999998876654 68999999999986 2112222222 2233333
Q ss_pred HHHHcCCCCCCCcEEEEEecCCC-----CcCCHHHHhccccEEEeCCCC
Q 006411 526 LIEMEGFDSGSEQILLVGATNRP-----QELDEAARRRLTKRLYIPLPS 569 (646)
Q Consensus 526 L~eLDGl~~~~~~VlVIaATNrP-----d~LDpALlRRFDr~I~IplPd 569 (646)
| . .+.+.|||||... -.-|+||.|||.+ |.|..|+
T Consensus 147 L---~-----rg~l~~IgatT~eey~~~~e~d~aL~rrF~~-I~V~Ep~ 186 (195)
T d1jbka_ 147 L---A-----RGELHCVGATTLDEYRQYIEKDAALERRFQK-VFVAEPS 186 (195)
T ss_dssp H---H-----TTSCCEEEEECHHHHHHHTTTCHHHHTTEEE-EECCCCC
T ss_pred H---h-----CCCceEEecCCHHHHHHHHHcCHHHHhcCCE-eecCCCC
Confidence 3 2 3457777777632 3559999999976 5788886
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=97.72 E-value=1.1e-05 Score=84.17 Aligned_cols=118 Identities=24% Similarity=0.445 Sum_probs=70.2
Q ss_pred cccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCC------------------------------------
Q 006411 410 WDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPP------------------------------------ 453 (646)
Q Consensus 410 fdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPP------------------------------------ 453 (646)
++-++|-+.-.+.|.+++.. .-...+||.|||
T Consensus 21 ld~~~gr~~ei~~~~~~L~r------------~~k~n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~ld~~~ 88 (387)
T d1qvra2 21 LDPVIGRDEEIRRVIQILLR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGS 88 (387)
T ss_dssp SCCCCSCHHHHHHHHHHHHC------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC--
T ss_pred CCCCcCcHHHHHHHHHHHhc------------CCCCCCeEECCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEEEeeHhh
Confidence 46678888777777776643 123567888888
Q ss_pred -------CchHHHHHHHHHHHhhhcC-CeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHH
Q 006411 454 -------IGEGEKLVRALFGVASCRQ-PAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQF 525 (646)
Q Consensus 454 -------vGesek~Vr~lF~~Ar~~a-PsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneL 525 (646)
.|+-+..+..+...+.... +.|+|||||..|+. ...+.+.... -.++...
T Consensus 89 l~ag~~~~g~~e~r~~~i~~~~~~~~~~~ilfide~h~l~~---------------------~g~~~g~~d~-a~~Lkp~ 146 (387)
T d1qvra2 89 LLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVG---------------------AGKAEGAVDA-GNMLKPA 146 (387)
T ss_dssp ---------CHHHHHHHHHHHHHTTCSSEEEEECCC-----------------------------------------HHH
T ss_pred hhcccCcchhHHHHHHHHHHHhccCCCceEEEeccHHHHhc---------------------CCCCCCcccH-HHHHHHH
Confidence 5778889999998887764 78899999999987 2212222111 1222323
Q ss_pred HHHHcCCCCCCCcEEEEEecCCCC----cCCHHHHhccccEEEeCCCCC
Q 006411 526 LIEMEGFDSGSEQILLVGATNRPQ----ELDEAARRRLTKRLYIPLPSS 570 (646)
Q Consensus 526 L~eLDGl~~~~~~VlVIaATNrPd----~LDpALlRRFDr~I~IplPd~ 570 (646)
| . .+.+-+||||..-+ .=|+||.|||.. |.|..|+.
T Consensus 147 L---~-----rg~~~~I~~tT~~ey~~~e~d~al~rrF~~-v~v~ep~~ 186 (387)
T d1qvra2 147 L---A-----RGELRLIGATTLDEYREIEKDPALERRFQP-VYVDEPTV 186 (387)
T ss_dssp H---H-----TTCCCEEEEECHHHHHHHTTCTTTCSCCCC-EEECCCCH
T ss_pred H---h-----CCCcceeeecCHHHHHHhcccHHHHHhccc-ccCCCCcH
Confidence 3 1 35677888886311 348899999976 57999985
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=97.47 E-value=0.00018 Score=72.42 Aligned_cols=134 Identities=16% Similarity=0.201 Sum_probs=83.7
Q ss_pred ccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHH----------------------------
Q 006411 411 DDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVR---------------------------- 462 (646)
Q Consensus 411 dDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr---------------------------- 462 (646)
..|.|.+++++.|.+.+...... +. .-..|...+||+||++.+.....+
T Consensus 23 ~~v~GQ~~ai~~v~~~i~~~~~~--l~-~~~kp~~~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~~~~~~~~~~~ 99 (315)
T d1qvra3 23 KRVVGQDEAIRAVADAIRRARAG--LK-DPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVS 99 (315)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGG--CS-CSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGG
T ss_pred CeEeCHHHHHHHHHHHHHHHhcC--CC-CCCCCceEEEEECCCcchHHHHHHHHHHHhcCCCcceEEEeccccccchhhh
Confidence 45789999999999888663210 00 011333356788999222211111
Q ss_pred ----------------HHHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHH
Q 006411 463 ----------------ALFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFL 526 (646)
Q Consensus 463 ----------------~lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL 526 (646)
.+.+..+.+.-|||||||||...+ .+.+.|+
T Consensus 100 ~L~g~~~gyvG~~~~~~l~~~~~~~p~~Vvl~DEieK~~~---------------------------------~v~~~ll 146 (315)
T d1qvra3 100 RLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHP---------------------------------DVFNILL 146 (315)
T ss_dssp GC--------------CHHHHHHHCSSEEEEESSGGGSCH---------------------------------HHHHHHH
T ss_pred hhcCCCCCCcCcccCChHHHHHHhCCCcEEEEehHhhcCH---------------------------------HHHHHHH
Confidence 123333444558999999997643 2566677
Q ss_pred HHHcCCC---C-----CCCcEEEEEecCC--------------------------CCcCCHHHHhccccEEEeCCCCCCC
Q 006411 527 IEMEGFD---S-----GSEQILLVGATNR--------------------------PQELDEAARRRLTKRLYIPLPSSGY 572 (646)
Q Consensus 527 ~eLDGl~---~-----~~~~VlVIaATNr--------------------------Pd~LDpALlRRFDr~I~IplPd~Gy 572 (646)
..||.=. . .-.+.++|+|||- ...+.|.++.|||..+.|.+.
T Consensus 147 ~~l~~g~~~~~~gr~v~~~~~i~i~tsnlG~~~i~~~~~~~~~~~~~~~~~~~~l~~~f~pEflnRid~Ii~F~~L---- 222 (315)
T d1qvra3 147 QILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPL---- 222 (315)
T ss_dssp HHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCC----
T ss_pred HHhccCceeCCCCcEecCcceEEEEecccChHHHhhhcccccchhhhhHHHHHHHHhhcCHHHHhcCCeeeeccch----
Confidence 7766421 0 1256999999995 356899999999999876653
Q ss_pred cHHHHHHHHHHH
Q 006411 573 SGSDMKNLVKEA 584 (646)
Q Consensus 573 SGADL~~Lc~eA 584 (646)
+..++..++..-
T Consensus 223 ~~~~~~~I~~~~ 234 (315)
T d1qvra3 223 TKEQIRQIVEIQ 234 (315)
T ss_dssp CHHHHHHHHHHH
T ss_pred hhhhhHHHHHHH
Confidence 456666666543
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=97.42 E-value=0.00064 Score=68.07 Aligned_cols=135 Identities=18% Similarity=0.162 Sum_probs=84.8
Q ss_pred ccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHH---------------------------
Q 006411 411 DDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRA--------------------------- 463 (646)
Q Consensus 411 dDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~--------------------------- 463 (646)
..|+|.+++++.|.+.|...... +. ....|...+||.|||+.+.....+.
T Consensus 22 ~~viGQ~~a~~~v~~~v~~~~~~--l~-~~~~p~~~~lf~Gp~GvGKT~lak~la~~l~~~~i~~d~s~~~~~~~~~~l~ 98 (315)
T d1r6bx3 22 MLVFGQDKAIEALTEAIKMARAG--LG-HEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLI 98 (315)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTT--CS-CTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSC
T ss_pred CeecChHHHHHHHHHHHHHHHcc--CC-CCCCCceEEEEECCCcchhHHHHHHHHhhccCCeeEeccccccchhhhhhhc
Confidence 57899999999999988653211 11 1123434588899993333322222
Q ss_pred --------------HHHHhhhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHHH
Q 006411 464 --------------LFGVASCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIEM 529 (646)
Q Consensus 464 --------------lF~~Ar~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~eL 529 (646)
+....+....+||+|||||...+ .+.+.||.-|
T Consensus 99 g~~~gy~g~~~~~~l~~~~~~~~~~vvl~DeieKa~~---------------------------------~V~~~lLqil 145 (315)
T d1r6bx3 99 GAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP---------------------------------DVFNILLQVM 145 (315)
T ss_dssp CCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSCH---------------------------------HHHHHHHHHH
T ss_pred ccCCCccccccCChhhHHHHhCccchhhhcccccccc---------------------------------hHhhhhHHhh
Confidence 23333445568999999997643 2567777777
Q ss_pred cC------CCC--CCCcEEEEEecCCCC-------------------------cCCHHHHhccccEEEeCCCCCCCcHHH
Q 006411 530 EG------FDS--GSEQILLVGATNRPQ-------------------------ELDEAARRRLTKRLYIPLPSSGYSGSD 576 (646)
Q Consensus 530 DG------l~~--~~~~VlVIaATNrPd-------------------------~LDpALlRRFDr~I~IplPd~GySGAD 576 (646)
|. ... .-.+.++|+|||--. .+.|.++-|||..+.+.+. +..+
T Consensus 146 d~G~ltd~~Gr~vdf~n~iiI~Tsnig~~~i~~~~~~~~~~~~~~~~~~~l~~~f~pEflnRid~ii~f~~l----~~~~ 221 (315)
T d1r6bx3 146 DNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHL----STDV 221 (315)
T ss_dssp HHSEEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCC----CHHH
T ss_pred ccceecCCCCCccCccceEEEeccchhhHHHHhhhccchhhhhhHhHHHHHHHhcCHHHHhhhhhhhcccch----hhhH
Confidence 52 211 135689999999532 3677888899998887654 4566
Q ss_pred HHHHHHHHh
Q 006411 577 MKNLVKEAS 585 (646)
Q Consensus 577 L~~Lc~eAa 585 (646)
+..++..-.
T Consensus 222 ~~~I~~~~l 230 (315)
T d1r6bx3 222 IHQVVDKFI 230 (315)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666664433
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=97.17 E-value=0.00071 Score=64.09 Aligned_cols=121 Identities=17% Similarity=0.247 Sum_probs=74.1
Q ss_pred CCCcccccc-cC--hHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhhhcC---------
Q 006411 405 DPHVRWDDI-AG--LEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVASCRQ--------- 472 (646)
Q Consensus 405 ~p~VsfdDI-gG--le~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar~~a--------- 472 (646)
.|..||++. +| -+.+...+++++..|- .....++|||||+.++...++++-..+....
T Consensus 4 n~~~tFdnF~vg~~N~~a~~~~~~~~~~~~----------~~~n~l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~ 73 (213)
T d1l8qa2 4 NPKYTLENFIVGEGNRLAYEVVKEALENLG----------SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 73 (213)
T ss_dssp CTTCCSSSCCCCTTTHHHHHHHHHHHHTTT----------TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCChhhccCCCcHHHHHHHHHHHHhCcC----------CCCCcEEEECCCCCcHHHHHHHHHHHhccCccceEEechH
Confidence 578899995 45 4556677777665531 1224589999997777788877766665433
Q ss_pred ------------------------CeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCchhhHHHHHHHHHH
Q 006411 473 ------------------------PAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEHESSRRLKTQFLIE 528 (646)
Q Consensus 473 ------------------------PsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~e~s~rilneLL~e 528 (646)
..+|+|||||.+.. + ...-.+|...
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~dll~iDDi~~i~~---------------------~----------~~~~~~lf~l 122 (213)
T d1l8qa2 74 DFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSG---------------------K----------ERTQIEFFHI 122 (213)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGTT---------------------C----------HHHHHHHHHH
T ss_pred HHHHHHHHHHHccchhhHHHHHhhccchhhhhhhhhcC---------------------c----------hHHHHHHHHH
Confidence 35667777776654 1 1122333444
Q ss_pred HcCCCCCCCcEEEEEecCCCCcC---CHHHHhccccEEEeCC
Q 006411 529 MEGFDSGSEQILLVGATNRPQEL---DEAARRRLTKRLYIPL 567 (646)
Q Consensus 529 LDGl~~~~~~VlVIaATNrPd~L---DpALlRRFDr~I~Ipl 567 (646)
++.+.. .+.-+||.++..|..+ .+.|.+||..-+.+.+
T Consensus 123 in~~~~-~~~~iiits~~~p~~l~~~~~dL~SRL~~g~~~~i 163 (213)
T d1l8qa2 123 FNTLYL-LEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEI 163 (213)
T ss_dssp HHHHHH-TTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEEC
T ss_pred HHHHhh-ccceEEEecCCcchhccccchHHHHHhhCceEEEE
Confidence 444333 3456777777777655 4788888865444433
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=97.04 E-value=0.003 Score=66.34 Aligned_cols=115 Identities=17% Similarity=0.263 Sum_probs=72.6
Q ss_pred hhHHHHHHHHHHHcCCCC-------CCCcEEEEEecC----CCCcCCHHHHhccccEEEeCCCCC---------------
Q 006411 517 SSRRLKTQFLIEMEGFDS-------GSEQILLVGATN----RPQELDEAARRRLTKRLYIPLPSS--------------- 570 (646)
Q Consensus 517 ~s~rilneLL~eLDGl~~-------~~~~VlVIaATN----rPd~LDpALlRRFDr~I~IplPd~--------------- 570 (646)
....+...++..+.+..- ..+.++.|+++. +|..+=|.|.-||+.++.+...+.
T Consensus 273 ~~eg~~~~ll~~~e~~~v~~~~~~~~~~~~l~i~~~~~~~~~~~gliPEliGRlPi~v~L~~L~~~dL~rILtEPknsLi 352 (443)
T d1g41a_ 273 SREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLT 352 (443)
T ss_dssp HHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHH
T ss_pred ccchhhhhhhhhccccccccccccccccchhhccccchhhcccccchhhhccceEEEEEccCccHHHHHHHHHhhhhhHH
Confidence 344566677777776542 134577777753 355677889999999999988875
Q ss_pred --------------CCcHHHHHHHHHHHhh----------hHHHHHHHhchhh----hhhcccCCCCccHHHHHHHHhhc
Q 006411 571 --------------GYSGSDMKNLVKEASM----------GPLREALRQGIEI----TRLQKEDMQPVTLQDFENALPQV 622 (646)
Q Consensus 571 --------------GySGADL~~Lc~eAa~----------~Airr~l~~~~~~----~~~~~~~~~~Vt~eDFe~AL~kv 622 (646)
-|+-..|+.+++.|.. +++|..++..... ..........|+.+.+...+..
T Consensus 353 kQy~~lf~~~gv~L~ft~~al~~iA~~A~~~n~~~~~~GAR~Lr~i~E~~l~~~~f~~p~~~~~~v~Id~~~v~~~l~~- 431 (443)
T d1g41a_ 353 EQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGE- 431 (443)
T ss_dssp HHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHGGGCTTCEEEECHHHHHHHHTT-
T ss_pred HHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhhhhcccCCchHHHHHHHHHHHHHhccCCCCCCCEEEECHHHHHhhhhc-
Confidence 5788889999888873 3444443332111 1111223345777777777654
Q ss_pred CCCCCHHHHHHH
Q 006411 623 RASVSLNELGIY 634 (646)
Q Consensus 623 rPSvs~~dl~~y 634 (646)
-+..+|+..|
T Consensus 432 --~~~~~dl~k~ 441 (443)
T d1g41a_ 432 --VVENEDLSRF 441 (443)
T ss_dssp --TTTCHHHHHH
T ss_pred --hhhcCCcccc
Confidence 4566777766
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.97 E-value=0.00052 Score=64.50 Aligned_cols=48 Identities=23% Similarity=0.284 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHcCCCCCCCcEEEEEecCCCCcCCHHHHhccccEEEeCCCC
Q 006411 518 SRRLKTQFLIEMEGFDSGSEQILLVGATNRPQELDEAARRRLTKRLYIPLPS 569 (646)
Q Consensus 518 s~rilneLL~eLDGl~~~~~~VlVIaATNrPd~LDpALlRRFDr~I~IplPd 569 (646)
.....+.||..|+... .++++|.+|+.++.|-|.+++|+ .++.++.|.
T Consensus 92 ~~~aqNaLLK~LEEPp---~~t~fiLit~~~~~ll~TI~SRC-~~i~~~~p~ 139 (198)
T d2gnoa2 92 TQQAANAFLKALEEPP---EYAVIVLNTRRWHYLLPTIKSRV-FRVVVNVPK 139 (198)
T ss_dssp CHHHHHHTHHHHHSCC---TTEEEEEEESCGGGSCHHHHTTS-EEEECCCCH
T ss_pred chhhhhHHHHHHhCCC---CCceeeeccCChhhCHHHHhcce-EEEeCCCch
Confidence 3456789999998754 47888899999999999999998 567888764
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.94 E-value=2.4e-06 Score=81.17 Aligned_cols=54 Identities=19% Similarity=0.154 Sum_probs=36.9
Q ss_pred cccccccChHHHHHHHHHHHHhhccCccccccCCCCCccccccCCCCchHHHHHHHHHHHhh
Q 006411 408 VRWDDIAGLEHAKKCVMEMVIWPLLRPDIFKGCRSPGKGLLLFGPPIGEGEKLVRALFGVAS 469 (646)
Q Consensus 408 VsfdDIgGle~~K~~L~E~V~lPL~~pelf~~~~~PprGVLLyGPPvGesek~Vr~lF~~Ar 469 (646)
++|.|..+.+.+.+.|.+.... . .....|+||||||||+.++....+.+.....
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~P~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 4 VNFTDKQFENRLNDNLEELIQG-K-------KAVESPTAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp TCCCHHHHHHHHHHHHHHHHTT-C-------CCCSSCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred cccChHHHHHHHHHHHHHHHhc-c-------cCCCCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5677777666666666554432 1 1235689999999997777777777766654
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=96.93 E-value=0.0005 Score=70.61 Aligned_cols=150 Identities=19% Similarity=0.208 Sum_probs=85.3
Q ss_pred ccccChHHHHHHHHHHHHhhccCc--------------c----ccccCCCCCccccccCCCCchHHH-------------
Q 006411 411 DDIAGLEHAKKCVMEMVIWPLLRP--------------D----IFKGCRSPGKGLLLFGPPIGEGEK------------- 459 (646)
Q Consensus 411 dDIgGle~~K~~L~E~V~lPL~~p--------------e----lf~~~~~PprGVLLyGPPvGesek------------- 459 (646)
.-|+|.+++|+.|-.+|-.-.++- . .......|+..+||.||.+-+...
T Consensus 17 ~~ViGQd~Akkava~Avrn~~rR~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~niLfiGPTGvGKTElAk~LA~~~~~~~ 96 (364)
T d1um8a_ 17 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPI 96 (364)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred CeecChHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccCCCcceeeeCCCCccHHHHHHHHHhhcccce
Confidence 358999999999977763211110 0 011124578999999999222222
Q ss_pred --------------------HHHHHHHHh----hhcCCeeeeehhhhHHhhhcccccccchhhhhhhhhhccccCCCCCc
Q 006411 460 --------------------LVRALFGVA----SCRQPAVIFVDEIDSLLSQMLPYMHVHHIKLFCLKRFYFQRKSDGEH 515 (646)
Q Consensus 460 --------------------~Vr~lF~~A----r~~aPsIIFIDEIDsL~~k~~~~~~~~~~~~~~~kr~~~~R~s~~~~ 515 (646)
.++.+...+ +....+|||+||||.+.+.- ........
T Consensus 97 ir~D~s~~~e~gyvg~dv~~~i~~l~~~~~~~v~~~~~~iv~lDEieK~~~~s-------------------~~~~~~~d 157 (364)
T d1um8a_ 97 AISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLS-------------------ENRSITRD 157 (364)
T ss_dssp EEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC-------------------------------
T ss_pred eehhhhhcccchhhHhhhccchhhhhhhchhHHHHhhcccchhhhhhhhcccc-------------------cccccccc
Confidence 344443332 34467899999999987610 00011111
Q ss_pred hhhHHHHHHHHHHHcCCC----C------CCCcEEEEEecCC--------------------------------------
Q 006411 516 ESSRRLKTQFLIEMEGFD----S------GSEQILLVGATNR-------------------------------------- 547 (646)
Q Consensus 516 e~s~rilneLL~eLDGl~----~------~~~~VlVIaATNr-------------------------------------- 547 (646)
.....+.+.||.-||+-. . ...+.++|.|+|-
T Consensus 158 ~a~~~V~~~lLqild~~~~~~~~~~gr~~~~~~~i~i~t~~i~~~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (364)
T d1um8a_ 158 VSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEA 237 (364)
T ss_dssp --CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTT
T ss_pred ccchHHHHhhhhhhcCceeccCCCCCCcCCcceeEEEeehhhhhhhcccchhhhhhhhhhcccccccccccccchhhhhh
Confidence 122457888999898521 0 1235677777775
Q ss_pred -----------CCcCCHHHHhccccEEEeCCCCCCCcHHHHHHHHHH
Q 006411 548 -----------PQELDEAARRRLTKRLYIPLPSSGYSGSDMKNLVKE 583 (646)
Q Consensus 548 -----------Pd~LDpALlRRFDr~I~IplPd~GySGADL~~Lc~e 583 (646)
+..+-|.++-|||.++.|..- +-.||..|+..
T Consensus 238 ~~~~~~~~~~~~~~f~PEf~gRi~~iv~f~~L----~~~~l~~Il~~ 280 (364)
T d1um8a_ 238 ILHLVQTHDLVTYGLIPELIGRLPVLSTLDSI----SLEAMVDILQK 280 (364)
T ss_dssp SGGGCCHHHHHHTTCCHHHHTTCCEEEECCCC----CHHHHHHHHHS
T ss_pred hhccccHHHHhhhhhHHHHHHHhcchhhHhhh----hHHHHHHHHHH
Confidence 234677888899999999875 45777777754
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=94.59 E-value=0.056 Score=51.72 Aligned_cols=48 Identities=23% Similarity=0.235 Sum_probs=27.6
Q ss_pred cEEEEEecCCCC-------cCCHHHHhcccc-EEEeCCCCCCCcHHHHHHHHHHHhhh
Q 006411 538 QILLVGATNRPQ-------ELDEAARRRLTK-RLYIPLPSSGYSGSDMKNLVKEASMG 587 (646)
Q Consensus 538 ~VlVIaATNrPd-------~LDpALlRRFDr-~I~IplPd~GySGADL~~Lc~eAa~~ 587 (646)
+|-||+||+.+- .+++.|+.|+.. .|.+|+-.+ -..||..|++.....
T Consensus 135 ~~RlI~~s~~~l~~l~~~~~f~~~L~~~l~~~~i~lPpLre--R~~Di~~l~~~~l~~ 190 (247)
T d1ny5a2 135 NVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRE--RKEDIIPLANHFLKK 190 (247)
T ss_dssp CCEEEEEESSCHHHHHHTTSSCHHHHHHHTTEEEECCCGGG--CHHHHHHHHHHHHHH
T ss_pred CeEEEEecCCCHHHHHHcCCCcHHHHhhcCeeeecCCChhh--chhhHhhhhhhhhhh
Confidence 577888888742 355566665543 355555432 346676666554443
|