Citrus Sinensis ID: 006426
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 645 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SKK0 | 628 | EIN3-binding F-box protei | yes | no | 0.973 | 1.0 | 0.627 | 0.0 | |
| Q708Y0 | 623 | EIN3-binding F-box protei | no | no | 0.961 | 0.995 | 0.578 | 0.0 | |
| Q9C5D2 | 610 | F-box/LRR-repeat protein | no | no | 0.817 | 0.863 | 0.289 | 2e-45 | |
| Q9CZV8 | 436 | F-box/LRR-repeat protein | yes | no | 0.592 | 0.876 | 0.280 | 4e-31 | |
| Q96IG2 | 436 | F-box/LRR-repeat protein | yes | no | 0.592 | 0.876 | 0.278 | 9e-31 | |
| Q58DG6 | 436 | F-box/LRR-repeat protein | yes | no | 0.592 | 0.876 | 0.278 | 9e-31 | |
| P34284 | 466 | Uncharacterized F-box/LRR | yes | no | 0.494 | 0.684 | 0.304 | 7e-28 | |
| Q8NEE6 | 735 | F-box/LRR-repeat protein | no | no | 0.632 | 0.555 | 0.259 | 2e-27 | |
| Q8BH16 | 423 | F-box/LRR-repeat protein | no | no | 0.468 | 0.713 | 0.319 | 3e-27 | |
| Q9UJT9 | 491 | F-box/LRR-repeat protein | no | no | 0.516 | 0.678 | 0.267 | 1e-26 |
| >sp|Q9SKK0|EBF1_ARATH EIN3-binding F-box protein 1 OS=Arabidopsis thaliana GN=EBF1 PE=1 SV=1 | Back alignment and function desciption |
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Score = 807 bits (2084), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/645 (62%), Positives = 510/645 (79%), Gaps = 17/645 (2%)
Query: 1 MSKLFALSGSDDFCPGGPIYPNPKESGLLLPLGPNVDVYFRARKRSRISAPFVYSEERFE 60
MS++F+ +G +DF G IYPNPK++ LLL LG DVYF KRSR+ AP ++S FE
Sbjct: 1 MSQIFSFAGENDFYRRGAIYPNPKDASLLLSLGSFADVYFPPSKRSRVVAPTIFSA--FE 58
Query: 61 QKQVSIEVLPDECLFEIFRRLDGGEERSACASVSKRWLSLLSNIHRDEIRSLKPESEKKV 120
+K VSI+VLPDECLFEIFRRL G +ERSACA VSK+WL+L+S+I + EI +
Sbjct: 59 KKPVSIDVLPDECLFEIFRRLSGPQERSACAFVSKQWLTLVSSIRQKEI-------DVPS 111
Query: 121 ELVSDAEDPDVERDGYLSRSLEGKKATDIRLAAIAVGTASRGGLGKLSIHGNNSTRGVTS 180
++ D +D + G LSRSL+GKKATD+RLAAIAVGTA RGGLGKLSI G+NS + V+
Sbjct: 112 KITEDGDDCE----GCLSRSLDGKKATDVRLAAIAVGTAGRGGLGKLSIRGSNSAK-VSD 166
Query: 181 AGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIAK 240
GLR+I R CPSL LSLWN S++ D GL EIA GC QLEKL+L +C ITD+ L+ IAK
Sbjct: 167 LGLRSIGRSCPSLGSLSLWNVSTITDNGLLEIAEGCAQLEKLELNRCSTITDKGLVAIAK 226
Query: 241 NCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEK 300
+CP L +LT+E+CS IG+EGL A+ R C LKS+SIK+C LV DQGIASLLS+ T SL K
Sbjct: 227 SCPNLTELTLEACSRIGDEGLLAIARSCSKLKSVSIKNCPLVRDQGIASLLSNTTCSLAK 286
Query: 301 VKLQRLNITDVSLAVIGHYGMAVTDLFLTGLPHVSERGFWVMGSGHGLQKLKSLTITSCM 360
+KLQ LN+TDVSLAV+GHYG+++TDL L GL HVSE+GFWVMG+G GLQKL SLTIT+C
Sbjct: 287 LKLQMLNVTDVSLAVVGHYGLSITDLVLAGLSHVSEKGFWVMGNGVGLQKLNSLTITACQ 346
Query: 361 GVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLGFF 420
GVTD+GLE+VGKGCPN+K+ + K LSDNGL+SFAKA+ SLESLQLEECHR+TQ GFF
Sbjct: 347 GVTDMGLESVGKGCPNMKKAIISKSPLLSDNGLVSFAKASLSLESLQLEECHRVTQFGFF 406
Query: 421 GSLLNCGEKLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCPGFGDASLAVLGKLC 480
GSLLNCGEKLKA SLV+CL I+D G+ + S C +LRSLSIRNCPGFGDA+LA +GKLC
Sbjct: 407 GSLLNCGEKLKAFSLVNCLSIRDLTTGLPASSHCSALRSLSIRNCPGFGDANLAAIGKLC 466
Query: 481 PQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAELHGWTLEML 540
PQL+++DL GL+G+T++GFL +++S L K+N SGC NLTD+V+S + +GWTLE+L
Sbjct: 467 PQLEDIDLCGLKGITESGFLHLIQS---SLVKINFSGCSNLTDRVISAITARNGWTLEVL 523
Query: 541 NLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLNLQILSLSGCSMV 600
N+DGC I+DASL++IA NC +L DLD+SKCA++D GI +LA + L LQILS++GCSMV
Sbjct: 524 NIDGCSNITDASLVSIAANCQILSDLDISKCAISDSGIQALASSDKLKLQILSVAGCSMV 583
Query: 601 SDKSLGALRKLGQTLLGLNLQHCNAISTNSVDMLVEQLWRCDVLS 645
+DKSL A+ LG TLLGLNLQ C +IS ++VD LVE+L++CD+LS
Sbjct: 584 TDKSLPAIVGLGSTLLGLNLQQCRSISNSTVDFLVERLYKCDILS 628
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Component of SCF(EBF1) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (probably including EIN3 and EIL1). Regulator of the ethylene signaling cascade by modulating the stability of EIN3 and EIL1 proteins. Confers insensitivity to ethylene. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q708Y0|EBF2_ARATH EIN3-binding F-box protein 2 OS=Arabidopsis thaliana GN=EBF2 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9C5D2|FBL4_ARATH F-box/LRR-repeat protein 4 OS=Arabidopsis thaliana GN=FBL4 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9CZV8|FXL20_MOUSE F-box/LRR-repeat protein 20 OS=Mus musculus GN=Fbxl20 PE=1 SV=3 | Back alignment and function description |
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| >sp|Q96IG2|FXL20_HUMAN F-box/LRR-repeat protein 20 OS=Homo sapiens GN=FBXL20 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q58DG6|FXL20_BOVIN F-box/LRR-repeat protein 20 OS=Bos taurus GN=FBXL20 PE=2 SV=2 | Back alignment and function description |
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| >sp|P34284|YKK7_CAEEL Uncharacterized F-box/LRR-repeat protein C02F5.7 OS=Caenorhabditis elegans GN=C02F5.7 PE=4 SV=3 | Back alignment and function description |
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| >sp|Q8NEE6|FXL13_HUMAN F-box/LRR-repeat protein 13 OS=Homo sapiens GN=FBXL13 PE=2 SV=3 | Back alignment and function description |
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| >sp|Q8BH16|FBXL2_MOUSE F-box/LRR-repeat protein 2 OS=Mus musculus GN=Fbxl2 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9UJT9|FBXL7_HUMAN F-box/LRR-repeat protein 7 OS=Homo sapiens GN=FBXL7 PE=2 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 645 | ||||||
| 224089259 | 646 | ein3-binding f-box protein 3 [Populus tr | 1.0 | 0.998 | 0.766 | 0.0 | |
| 255548920 | 651 | grr1, plant, putative [Ricinus communis] | 0.998 | 0.989 | 0.753 | 0.0 | |
| 407280633 | 646 | EIN3 binding F-box 1 [Malus x domestica] | 0.996 | 0.995 | 0.739 | 0.0 | |
| 356552519 | 644 | PREDICTED: EIN3-binding F-box protein 1- | 0.996 | 0.998 | 0.722 | 0.0 | |
| 356552521 | 641 | PREDICTED: EIN3-binding F-box protein 1- | 0.992 | 0.998 | 0.723 | 0.0 | |
| 449437138 | 640 | PREDICTED: EIN3-binding F-box protein 1- | 0.990 | 0.998 | 0.704 | 0.0 | |
| 225430289 | 667 | PREDICTED: EIN3-binding F-box protein 1- | 0.998 | 0.965 | 0.713 | 0.0 | |
| 357436981 | 643 | Ein3-binding f-box protein [Medicago tru | 0.990 | 0.993 | 0.710 | 0.0 | |
| 449533300 | 631 | PREDICTED: EIN3-binding F-box protein 1- | 0.976 | 0.998 | 0.701 | 0.0 | |
| 356507724 | 636 | PREDICTED: EIN3-binding F-box protein 1- | 0.982 | 0.996 | 0.668 | 0.0 |
| >gi|224089259|ref|XP_002308665.1| ein3-binding f-box protein 3 [Populus trichocarpa] gi|222854641|gb|EEE92188.1| ein3-binding f-box protein 3 [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 1000 bits (2585), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 495/646 (76%), Positives = 561/646 (86%), Gaps = 1/646 (0%)
Query: 1 MSKLFALSGSDDFCPGGPIYPNPKESGLLLPLGPNVDVYFRARKRSRISAPFVYSEERFE 60
MSK+F +G +DFCPGGPIY N KE L L +G VDVYF +RKRSRISAPFV++EERFE
Sbjct: 1 MSKVFGFAGENDFCPGGPIYTNHKEQNLFLSIGRPVDVYFPSRKRSRISAPFVFTEERFE 60
Query: 61 QK-QVSIEVLPDECLFEIFRRLDGGEERSACASVSKRWLSLLSNIHRDEIRSLKPESEKK 119
QK Q SIE LPDECLFEIFRRL GG+ER ACA VSKRWLSLLSNI +DE+ S ++K
Sbjct: 61 QKKQASIEFLPDECLFEIFRRLPGGDERGACACVSKRWLSLLSNICKDELCSQNESAKKN 120
Query: 120 VELVSDAEDPDVERDGYLSRSLEGKKATDIRLAAIAVGTASRGGLGKLSIHGNNSTRGVT 179
++ S+ ED ++E DGYLSRSLEGKKATDIRLAAIAVGTASRGGLGKL I G+NS++GVT
Sbjct: 121 TQVKSEVEDEEIEGDGYLSRSLEGKKATDIRLAAIAVGTASRGGLGKLFIRGSNSSQGVT 180
Query: 180 SAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIA 239
GLRAIARGCPSL+VLSLWN SVGDEGL EIANGCH+LEKLDL QCPAITD+ L+ IA
Sbjct: 181 KVGLRAIARGCPSLKVLSLWNLPSVGDEGLSEIANGCHKLEKLDLSQCPAITDKGLLAIA 240
Query: 240 KNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLE 299
K+CP L DL IESC++IGNEGLQAVG+ C NLKSISIK+C +GDQGIA+L+SSAT L
Sbjct: 241 KSCPNLTDLVIESCTNIGNEGLQAVGQHCTNLKSISIKNCPAIGDQGIAALVSSATNVLT 300
Query: 300 KVKLQRLNITDVSLAVIGHYGMAVTDLFLTGLPHVSERGFWVMGSGHGLQKLKSLTITSC 359
KVKLQ LNITDVSLAV+GHYG AVTDLFLT L +VSERGFWVMG+G GLQKLKS+T+ SC
Sbjct: 301 KVKLQALNITDVSLAVVGHYGKAVTDLFLTSLSNVSERGFWVMGNGQGLQKLKSMTVASC 360
Query: 360 MGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLGF 419
+G+TD GLEAVGKGCPNLKQF L KC+FLSDNGL+SFAK+A SLESL LEECHRITQ GF
Sbjct: 361 VGLTDTGLEAVGKGCPNLKQFNLHKCSFLSDNGLVSFAKSAVSLESLLLEECHRITQFGF 420
Query: 420 FGSLLNCGEKLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCPGFGDASLAVLGKL 479
FGSLLNCG LKA SLV+C GIKD L + +SPCKSLRSLSIRNCPGFGD SLA+LGKL
Sbjct: 421 FGSLLNCGANLKAASLVNCFGIKDLKLDLPELSPCKSLRSLSIRNCPGFGDGSLALLGKL 480
Query: 480 CPQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAELHGWTLEM 539
CPQLQNV+LSGLQGVTDAGFLPVLE+CEAGL KVNLSGCVNL+DKVVS M E HGWTLE+
Sbjct: 481 CPQLQNVELSGLQGVTDAGFLPVLENCEAGLVKVNLSGCVNLSDKVVSVMTEQHGWTLEV 540
Query: 540 LNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLNLQILSLSGCSM 599
LNLDGCR+I+DASL+AIA+NC LL DLDVSKCA TD GIA++A N LNLQ+LS+SGCSM
Sbjct: 541 LNLDGCRRITDASLVAIAENCFLLSDLDVSKCATTDSGIAAVARSNQLNLQVLSMSGCSM 600
Query: 600 VSDKSLGALRKLGQTLLGLNLQHCNAISTNSVDMLVEQLWRCDVLS 645
+SDKSL AL KLG+TLLGLNLQHCNAIS+++VD+LVE+LWRCD+LS
Sbjct: 601 ISDKSLLALIKLGRTLLGLNLQHCNAISSSTVDVLVERLWRCDILS 646
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255548920|ref|XP_002515516.1| grr1, plant, putative [Ricinus communis] gi|223545460|gb|EEF46965.1| grr1, plant, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|407280633|gb|AFT92041.1| EIN3 binding F-box 1 [Malus x domestica] | Back alignment and taxonomy information |
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| >gi|356552519|ref|XP_003544614.1| PREDICTED: EIN3-binding F-box protein 1-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356552521|ref|XP_003544615.1| PREDICTED: EIN3-binding F-box protein 1-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
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| >gi|449437138|ref|XP_004136349.1| PREDICTED: EIN3-binding F-box protein 1-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|225430289|ref|XP_002285126.1| PREDICTED: EIN3-binding F-box protein 1-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|357436981|ref|XP_003588766.1| Ein3-binding f-box protein [Medicago truncatula] gi|355477814|gb|AES59017.1| Ein3-binding f-box protein [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|449533300|ref|XP_004173614.1| PREDICTED: EIN3-binding F-box protein 1-like, partial [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356507724|ref|XP_003522614.1| PREDICTED: EIN3-binding F-box protein 1-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 645 | ||||||
| TAIR|locus:2040105 | 628 | EBF1 "AT2G25490" [Arabidopsis | 0.973 | 1.0 | 0.631 | 4e-216 | |
| TAIR|locus:2145512 | 623 | EBF2 "EIN3-binding F box prote | 0.917 | 0.950 | 0.602 | 1.4e-188 | |
| TAIR|locus:505006471 | 610 | AT4G15475 "AT4G15475" [Arabido | 0.851 | 0.9 | 0.296 | 2.2e-50 | |
| TAIR|locus:2149805 | 665 | AT5G01720 "AT5G01720" [Arabido | 0.694 | 0.673 | 0.287 | 1.7e-39 | |
| RGD|1562243 | 422 | Fbxl2 "F-box and leucine-rich | 0.477 | 0.729 | 0.318 | 4.1e-32 | |
| MGI|MGI:1919429 | 423 | Fbxl2 "F-box and leucine-rich | 0.477 | 0.728 | 0.318 | 5.3e-32 | |
| UNIPROTKB|Q9UKC9 | 423 | FBXL2 "F-box/LRR-repeat protei | 0.477 | 0.728 | 0.318 | 1.1e-31 | |
| UNIPROTKB|Q5R3Z8 | 423 | FBXL2 "F-box/LRR-repeat protei | 0.477 | 0.728 | 0.318 | 1.1e-31 | |
| UNIPROTKB|F1NHD2 | 423 | FBXL2 "Uncharacterized protein | 0.477 | 0.728 | 0.315 | 2.4e-31 | |
| UNIPROTKB|F1PWK1 | 422 | FBXL2 "Uncharacterized protein | 0.477 | 0.729 | 0.315 | 6.5e-31 |
| TAIR|locus:2040105 EBF1 "AT2G25490" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 2088 (740.1 bits), Expect = 4.0e-216, P = 4.0e-216
Identities = 407/645 (63%), Positives = 511/645 (79%)
Query: 1 MSKLFALSGSDDFCPGGPIYPNPKESGLLLPLGPNVDVYFRARKRSRISAPFVYSEERFE 60
MS++F+ +G +DF G IYPNPK++ LLL LG DVYF KRSR+ AP ++S FE
Sbjct: 1 MSQIFSFAGENDFYRRGAIYPNPKDASLLLSLGSFADVYFPPSKRSRVVAPTIFSA--FE 58
Query: 61 QKQVSIEVLPDECLFEIFRRLDGGEERSACASVSKRWLSLLSNIHRDEIRSLKPESEKKV 120
+K VSI+VLPDECLFEIFRRL G +ERSACA VSK+WL+L+S+I + EI + K+
Sbjct: 59 KKPVSIDVLPDECLFEIFRRLSGPQERSACAFVSKQWLTLVSSIRQKEI-----DVPSKI 113
Query: 121 ELVSDAEDPDVERDGYLSRSLEGKKATDIRLAAIAVGTASRGGLGKLSIHGNNSTRGVTS 180
ED D + +G LSRSL+GKKATD+RLAAIAVGTA RGGLGKLSI G+NS + V+
Sbjct: 114 -----TEDGD-DCEGCLSRSLDGKKATDVRLAAIAVGTAGRGGLGKLSIRGSNSAK-VSD 166
Query: 181 AGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIAK 240
GLR+I R CPSL LSLWN S++ D GL EIA GC QLEKL+L +C ITD+ L+ IAK
Sbjct: 167 LGLRSIGRSCPSLGSLSLWNVSTITDNGLLEIAEGCAQLEKLELNRCSTITDKGLVAIAK 226
Query: 241 NCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEK 300
+CP L +LT+E+CS IG+EGL A+ R C LKS+SIK+C LV DQGIASLLS+ T SL K
Sbjct: 227 SCPNLTELTLEACSRIGDEGLLAIARSCSKLKSVSIKNCPLVRDQGIASLLSNTTCSLAK 286
Query: 301 VKLQRLNITDVSLAVIGHYGMAVTDLFLTGLPHVSERGFWVMGSGHGLQKLKSLTITSCM 360
+KLQ LN+TDVSLAV+GHYG+++TDL L GL HVSE+GFWVMG+G GLQKL SLTIT+C
Sbjct: 287 LKLQMLNVTDVSLAVVGHYGLSITDLVLAGLSHVSEKGFWVMGNGVGLQKLNSLTITACQ 346
Query: 361 GVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLGFF 420
GVTD+GLE+VGKGCPN+K+ + K LSDNGL+SFAKA+ SLESLQLEECHR+TQ GFF
Sbjct: 347 GVTDMGLESVGKGCPNMKKAIISKSPLLSDNGLVSFAKASLSLESLQLEECHRVTQFGFF 406
Query: 421 GSLLNCGEKLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNCPGFGDASLAVLGKLC 480
GSLLNCGEKLKA SLV+CL I+D G+ + S C +LRSLSIRNCPGFGDA+LA +GKLC
Sbjct: 407 GSLLNCGEKLKAFSLVNCLSIRDLTTGLPASSHCSALRSLSIRNCPGFGDANLAAIGKLC 466
Query: 481 PQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNLTDKVVSTMAELHGWTLEML 540
PQL+++DL GL+G+T++GFL +++S L K+N SGC NLTD+V+S + +GWTLE+L
Sbjct: 467 PQLEDIDLCGLKGITESGFLHLIQS---SLVKINFSGCSNLTDRVISAITARNGWTLEVL 523
Query: 541 NLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLNLQILSLSGCSMV 600
N+DGC I+DASL++IA NC +L DLD+SKCA++D GI +LA + L LQILS++GCSMV
Sbjct: 524 NIDGCSNITDASLVSIAANCQILSDLDISKCAISDSGIQALASSDKLKLQILSVAGCSMV 583
Query: 601 SDKSLGALRKLGQTLLGLNLQHCNAISTNSVDMLVEQLWRCDVLS 645
+DKSL A+ LG TLLGLNLQ C +IS ++VD LVE+L++CD+LS
Sbjct: 584 TDKSLPAIVGLGSTLLGLNLQQCRSISNSTVDFLVERLYKCDILS 628
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| TAIR|locus:2145512 EBF2 "EIN3-binding F box protein 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:505006471 AT4G15475 "AT4G15475" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2149805 AT5G01720 "AT5G01720" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| RGD|1562243 Fbxl2 "F-box and leucine-rich repeat protein 2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| MGI|MGI:1919429 Fbxl2 "F-box and leucine-rich repeat protein 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q9UKC9 FBXL2 "F-box/LRR-repeat protein 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q5R3Z8 FBXL2 "F-box/LRR-repeat protein 2" [Pongo abelii (taxid:9601)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1NHD2 FBXL2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1PWK1 FBXL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SKK0 | EBF1_ARATH | No assigned EC number | 0.6279 | 0.9736 | 1.0 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | EBF3 | ein3-binding f-box protein 3 (646 aa) | ||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 645 | |||
| cd09293 | 226 | cd09293, AMN1, Antagonist of mitotic exit network | 2e-19 | |
| cd09293 | 226 | cd09293, AMN1, Antagonist of mitotic exit network | 8e-18 | |
| cd09293 | 226 | cd09293, AMN1, Antagonist of mitotic exit network | 2e-17 | |
| cd09293 | 226 | cd09293, AMN1, Antagonist of mitotic exit network | 2e-15 | |
| cd09293 | 226 | cd09293, AMN1, Antagonist of mitotic exit network | 5e-14 | |
| cd09293 | 226 | cd09293, AMN1, Antagonist of mitotic exit network | 2e-10 | |
| cd09293 | 226 | cd09293, AMN1, Antagonist of mitotic exit network | 1e-04 | |
| pfam12937 | 47 | pfam12937, F-box-like, F-box-like | 1e-04 | |
| smart00367 | 26 | smart00367, LRR_CC, Leucine-rich repeat - CC (cyst | 2e-04 | |
| pfam00646 | 48 | pfam00646, F-box, F-box domain | 4e-04 | |
| smart00256 | 41 | smart00256, FBOX, A Receptor for Ubiquitination Ta | 0.002 | |
| cd00116 | 319 | cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo | 0.003 |
| >gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1 | Back alignment and domain information |
|---|
Score = 87.0 bits (216), Expect = 2e-19
Identities = 55/181 (30%), Positives = 86/181 (47%), Gaps = 15/181 (8%)
Query: 218 QLEKLDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIK 277
LE L+L CP NC KL L + I +EGL A+ + CPNL+ + ++
Sbjct: 29 GLEWLELYMCPISDPPLDQLS--NCNKLKKLILPGSKLIDDEGLIALAQSCPNLQVLDLR 86
Query: 278 DCRLVGDQGIASLLSSATY--SLEKVKLQRLN----ITDVSLAVIGHYGMAVTDLFLTGL 331
C + D GI +L AT L+ + L R ITDVSL+ +G + + G
Sbjct: 87 ACENITDSGIVAL---ATNCPKLQTINLGRHRNGHLITDVSLSALGKNCTFLQTVGFAGC 143
Query: 332 PHVSERGFWVMGSGHGLQKLKSLTITSCMGVTDLGLEAV--GKGCPNLKQFCLRKCAFLS 389
V+++G W + SG + L+ L++ +C +TD + A+ PNL R C ++
Sbjct: 144 -DVTDKGVWELASGCS-KSLERLSLNNCRNLTDQSIPAILASNYFPNLSVLEFRGCPLIT 201
Query: 390 D 390
D
Sbjct: 202 D 202
|
Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226 |
| >gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1 | Back alignment and domain information |
|---|
| >gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1 | Back alignment and domain information |
|---|
| >gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1 | Back alignment and domain information |
|---|
| >gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1 | Back alignment and domain information |
|---|
| >gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1 | Back alignment and domain information |
|---|
| >gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1 | Back alignment and domain information |
|---|
| >gnl|CDD|221867 pfam12937, F-box-like, F-box-like | Back alignment and domain information |
|---|
| >gnl|CDD|197685 smart00367, LRR_CC, Leucine-rich repeat - CC (cysteine-containing) subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|201368 pfam00646, F-box, F-box domain | Back alignment and domain information |
|---|
| >gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets | Back alignment and domain information |
|---|
| >gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 645 | |||
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 100.0 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 99.96 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 99.95 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.82 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.81 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.74 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.72 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 99.66 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 99.62 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.61 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.61 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 99.57 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.53 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.48 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.38 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.31 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.27 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.24 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.17 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.13 | |
| PF12937 | 47 | F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B | 99.08 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.02 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.99 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 98.82 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 98.76 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 98.73 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 98.66 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 98.65 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 98.63 | |
| PF00646 | 48 | F-box: F-box domain; InterPro: IPR001810 The F-box | 98.58 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 98.52 | |
| smart00256 | 41 | FBOX A Receptor for Ubiquitination Targets. | 98.41 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 98.33 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 98.18 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.17 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.16 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 98.14 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 98.14 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.14 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.11 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.1 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.07 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.0 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 97.96 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 97.96 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 97.64 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 97.58 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 97.38 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 97.35 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.24 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 97.1 | |
| smart00367 | 26 | LRR_CC Leucine-rich repeat - CC (cysteine-containi | 96.8 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 96.79 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 96.6 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 96.57 | |
| KOG2997 | 366 | consensus F-box protein FBX9 [General function pre | 96.54 | |
| PLN03215 | 373 | ascorbic acid mannose pathway regulator 1; Provisi | 96.54 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 96.5 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 96.43 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 96.4 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 96.32 | |
| smart00367 | 26 | LRR_CC Leucine-rich repeat - CC (cysteine-containi | 96.3 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 96.14 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.02 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 95.83 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 95.7 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 95.21 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 95.2 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 95.19 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 95.1 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 94.82 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 94.59 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 94.47 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 94.09 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 93.67 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 93.58 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 93.51 | |
| PF13013 | 109 | F-box-like_2: F-box-like domain | 92.07 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 91.38 | |
| smart00368 | 28 | LRR_RI Leucine rich repeat, ribonuclease inhibitor | 91.22 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 90.64 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 87.16 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 86.96 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 86.34 | |
| smart00368 | 28 | LRR_RI Leucine rich repeat, ribonuclease inhibitor | 85.51 | |
| KOG3763 | 585 | consensus mRNA export factor TAP/MEX67 [RNA proces | 83.94 |
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=279.38 Aligned_cols=383 Identities=26% Similarity=0.452 Sum_probs=245.2
Q ss_pred ccCCCHHHHHHHHhhcCCcccchhhhhhhHhHHHHhhhhhhhhhcccCCCcchhhhhccCCCCCCccccccceeecccCC
Q 006426 66 IEVLPDECLFEIFRRLDGGEERSACASVSKRWLSLLSNIHRDEIRSLKPESEKKVELVSDAEDPDVERDGYLSRSLEGKK 145 (645)
Q Consensus 66 ~~~LP~eil~~If~~L~~~~d~~~~~~Vcr~W~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (645)
.-.||+|++..||++|+ .+.+++++.||+-|+..+.+ ...|.+++.+....+++. ..
T Consensus 72 ~~~LPpEl~lkvFS~LD-tksl~r~a~~c~~~n~~AlD------------~~~~q~idL~t~~rDv~g----------~V 128 (483)
T KOG4341|consen 72 SRSLPPELLLKVFSMLD-TKSLCRAAQCCTMWNKLALD------------GSCWQHIDLFTFQRDVDG----------GV 128 (483)
T ss_pred cccCCHHHHHHHHHHHh-HHHHHHHHHHHHHhhhhhhc------------cccceeeehhcchhcCCC----------cc
Confidence 33699999999999999 99999999999999999866 377888875554343331 11
Q ss_pred CcchhHHHHHhcccCCCCCceEEeccccCCCCcChHHHHHHHhcCCCccEEEeccCCCCChHHHHHHHhhCCCCCEEecC
Q 006426 146 ATDIRLAAIAVGTASRGGLGKLSIHGNNSTRGVTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLC 225 (645)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~ 225 (645)
+... ..+..+.++.|.++++. .+.+..+..+...||++++|.+.+|.++++..+..+.+.|++|+.|++.
T Consensus 129 V~~~-------~~Rcgg~lk~LSlrG~r---~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~ 198 (483)
T KOG4341|consen 129 VENM-------ISRCGGFLKELSLRGCR---AVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLH 198 (483)
T ss_pred eehH-------hhhhccccccccccccc---cCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhc
Confidence 1111 11223678888888854 5777778888888888888888888888888888888888888888888
Q ss_pred CCCCCCHHHHHHHHhhCCCCcEEeeccCCCCChHHHHHHHhcCCCccEEEecCCCCcChHHHHHHHHhcccccceeeecc
Q 006426 226 QCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQR 305 (645)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~L~~ 305 (645)
.|..+++..+..+++.|++|++|++++|+.++..+++.+.+.+..++++..++|...+...+.....+
T Consensus 199 ~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~------------ 266 (483)
T KOG4341|consen 199 SCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAY------------ 266 (483)
T ss_pred ccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhcc------------
Confidence 88888888888888888888888888888877777777777777777777667665544444333222
Q ss_pred ccCCcccHHHHhhcCcccchhhccCCCCcCchhhhhhccccCCCCccEEeeCCCCCCChHHHHHHhhcCCccceEEeCCC
Q 006426 306 LNITDVSLAVIGHYGMAVTDLFLTGLPHVSERGFWVMGSGHGLQKLKSLTITSCMGVTDLGLEAVGKGCPNLKQFCLRKC 385 (645)
Q Consensus 306 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 385 (645)
++-+.++++..|..++|.++..+..+|..|+.|+.++|
T Consensus 267 ------------------------------------------~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~ 304 (483)
T KOG4341|consen 267 ------------------------------------------CLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSC 304 (483)
T ss_pred ------------------------------------------ChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCC
Confidence 12233333444555666666566666666666666666
Q ss_pred CCCCHHHHHHHHHhcCCCCeeecccccccchhhHHHHhhhcCcCCcEEeccccCCCCccccccccccCCCCCcEEeccCC
Q 006426 386 AFLSDNGLISFAKAAFSLESLQLEECHRITQLGFFGSLLNCGEKLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSIRNC 465 (645)
Q Consensus 386 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~ 465 (645)
..+++..+..+.+++++|+.|.+..|..+++.++..+.. +++.|+.+++.+|
T Consensus 305 t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~r----------------------------n~~~Le~l~~e~~ 356 (483)
T KOG4341|consen 305 TDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGR----------------------------NCPHLERLDLEEC 356 (483)
T ss_pred CCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhc----------------------------CChhhhhhccccc
Confidence 666666666666666666666666666655555554422 2455555555555
Q ss_pred CCCCHHHHHHHHhcCCCCcEEEecCCCCCCccchHHHHhhc--ccCceEEEccCCCCCChHHHHHHHHhhCCCccEEecC
Q 006426 466 PGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESC--EAGLAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLD 543 (645)
Q Consensus 466 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~--~~~L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~ 543 (645)
..+.+..+..++.+||.|+.+.++.|..++++|+..+-... -..|+.+.+++|+.+++..++.+.. +++|+.+++-
T Consensus 357 ~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~--c~~Leri~l~ 434 (483)
T KOG4341|consen 357 GLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSI--CRNLERIELI 434 (483)
T ss_pred ceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhh--Ccccceeeee
Confidence 55555556666666677777777666666666655543211 0134444444444444444444433 4444444444
Q ss_pred CCCCCCHHHHHHHHhcCCcCCe
Q 006426 544 GCRKISDASLMAIADNCPLLCD 565 (645)
Q Consensus 544 ~c~~l~~~~l~~l~~~~~~L~~ 565 (645)
+|.+++.+++..+..++|++++
T Consensus 435 ~~q~vtk~~i~~~~~~lp~i~v 456 (483)
T KOG4341|consen 435 DCQDVTKEAISRFATHLPNIKV 456 (483)
T ss_pred chhhhhhhhhHHHHhhCcccee
Confidence 4444444444444444444443
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B | Back alignment and domain information |
|---|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
| >PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] | Back alignment and domain information |
|---|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
| >smart00256 FBOX A Receptor for Ubiquitination Targets | Back alignment and domain information |
|---|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
| >smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily | Back alignment and domain information |
|---|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
| >KOG2997 consensus F-box protein FBX9 [General function prediction only] | Back alignment and domain information |
|---|
| >PLN03215 ascorbic acid mannose pathway regulator 1; Provisional | Back alignment and domain information |
|---|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily | Back alignment and domain information |
|---|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
| >PF13013 F-box-like_2: F-box-like domain | Back alignment and domain information |
|---|
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
| >smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type | Back alignment and domain information |
|---|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
| >smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type | Back alignment and domain information |
|---|
| >KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 645 | ||||
| 3ogk_B | 592 | Structure Of Coi1-Ask1 In Complex With Coronatine A | 6e-09 | ||
| 3ogk_B | 592 | Structure Of Coi1-Ask1 In Complex With Coronatine A | 2e-04 | ||
| 2p1m_B | 594 | Tir1-ask1 Complex Structure Length = 594 | 5e-07 | ||
| 2p1m_B | 594 | Tir1-ask1 Complex Structure Length = 594 | 1e-04 | ||
| 1fqv_A | 336 | Insights Into Scf Ubiquitin Ligases From The Struct | 1e-05 | ||
| 1fs2_A | 272 | Insights Into Scf Ubiquitin Ligases From The Struct | 1e-05 |
| >pdb|3OGK|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And An Incomplete Jaz1 Degron Length = 592 | Back alignment and structure |
|
| >pdb|3OGK|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And An Incomplete Jaz1 Degron Length = 592 | Back alignment and structure |
| >pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure Length = 594 | Back alignment and structure |
| >pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure Length = 594 | Back alignment and structure |
| >pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of The Skp1-Skp2 Complex Length = 336 | Back alignment and structure |
| >pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of The Skp1-Skp2 Complex Length = 272 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 271 bits (695), Expect = 7e-83
Identities = 117/603 (19%), Positives = 218/603 (36%), Gaps = 71/603 (11%)
Query: 62 KQVSIEVLPDECLFEIFRRLDGGEERSACASVSKRWLSLLSNIHRDEIRSLKPESEKKVE 121
++ P+E L +F + ++R++ + V K W + R ++ +
Sbjct: 2 QKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI-ERWCRRKVFIGNCYAVSPAT 60
Query: 122 LVS---DAEDPDVERDGYLS-RSLEGKKATDIRLAAIAVGTASRGGLGKLSIHGNNSTRG 177
++ +++ + + +L I ++S L ++ +
Sbjct: 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV---- 116
Query: 178 VTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDL--CQCPAITDRAL 235
VT L IA+ + +VL L + +GL IA C L++LDL ++ L
Sbjct: 117 VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWL 176
Query: 236 ITIAKNCPKLIDLTIESCSS-IGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSA 294
L+ L I +S + L+ + CPNLKS+ + V + +A+LL A
Sbjct: 177 SHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA--VPLEKLATLLQRA 234
Query: 295 TYSLEKVKLQRLNITDVSLAVIGHYGMAVTDLFLTGLPHVSERGFWVMGSGHGLQKLKSL 354
+L+ L + V ++ G ++L+ L
Sbjct: 235 P------QLEELGTGGYTAEVRPDVYSGLSVAL------------------SGCKELRCL 270
Query: 355 TITSCMGVTDLGLEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRI 414
+ L AV C L L + L+ L+ L + I
Sbjct: 271 --SGFWDAVPAYLPAVYSVCSRLTTLNLSYA-TVQSYDLVKLLCQCPKLQRLWV--LDYI 325
Query: 415 TQLGFFGSLLNCGEKLKALSLVSCLGIKDQN------LGVRSVSP-CKSLRSLSIRNCPG 467
G L + + L+ L + + G+ SVS C L S+ + C
Sbjct: 326 EDAGLE-VLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESV-LYFCRQ 383
Query: 468 FGDASLAVLGKLCPQLQNVDLSGLQ---------GVTDAGFLPVLESCEAGLAKVNLSGC 518
+A+L + + P + L ++ D GF ++E C+ L +++LSG
Sbjct: 384 MTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCK-DLRRLSLSGL 442
Query: 519 VNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGI 578
LTDKV + + +EML++ SD + + C L L++ C D +
Sbjct: 443 --LTDKVFEYIGT-YAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPFGDKAL 498
Query: 579 ASLAHGNYLNLQILSLSGCSMVSDKSLGALRKLGQTLLGLNLQHCNAISTNSVDMLVEQL 638
+ A ++ L +S CS+ S GA + LGQ + LN++ + +
Sbjct: 499 LANAS-KLETMRSLWMSSCSV----SFGACKLLGQKMPKLNVEVIDERGAPDSRPESCPV 553
Query: 639 WRC 641
R
Sbjct: 554 ERV 556
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
| >2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297 | Back alignment and structure |
|---|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
| >1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53 | Back alignment and structure |
|---|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185 | Back alignment and structure |
|---|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185 | Back alignment and structure |
|---|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 645 | |||
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 100.0 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 100.0 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 100.0 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.98 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.97 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.95 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.95 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.85 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.85 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.83 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.83 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.83 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.82 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.82 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.8 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.8 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.79 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.79 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.79 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.79 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.78 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.78 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.78 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.77 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.77 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.75 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.74 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.73 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.73 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.73 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.73 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.73 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.72 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.72 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.72 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.69 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.69 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.67 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.66 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.64 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.61 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.61 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.6 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.56 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.55 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.54 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.53 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.52 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.51 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.49 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.48 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.48 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 99.45 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.44 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.42 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 99.39 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.39 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.37 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.35 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.33 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.31 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.31 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.3 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.3 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.28 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.27 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.26 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.25 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.24 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.24 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.24 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.22 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.21 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.2 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.19 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.19 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.18 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.17 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.17 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.15 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.14 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.13 | |
| 1fs1_A | 53 | SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L | 99.13 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.12 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.12 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.05 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 99.05 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.05 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.03 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.01 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.98 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 98.97 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 98.96 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 98.95 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.93 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 98.88 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 98.88 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 98.87 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 98.87 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 98.86 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.86 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 98.85 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 98.83 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 98.83 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 98.83 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.82 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 98.78 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 98.7 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 98.68 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.68 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 98.67 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 98.66 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.65 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.64 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 98.5 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 98.5 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 98.47 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 98.46 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 98.44 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 98.44 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 98.43 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 98.41 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 98.4 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.34 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 98.33 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 98.33 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 98.31 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 98.31 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 98.25 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 98.24 | |
| 3l2o_B | 312 | F-box only protein 4; small G protein fold, UBL co | 98.21 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 98.21 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 98.14 | |
| 2e31_A | 297 | FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui | 98.13 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 98.1 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 98.09 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.08 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 98.02 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 97.98 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 97.86 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 97.86 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 97.79 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 97.78 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 97.74 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 97.7 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 97.68 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 97.62 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 97.6 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 97.59 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 97.48 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 97.45 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 97.42 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 97.29 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 97.21 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 97.06 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 96.91 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 96.79 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 96.75 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 96.66 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 96.43 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 96.32 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 96.02 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 95.95 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 95.79 |
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-42 Score=367.95 Aligned_cols=499 Identities=20% Similarity=0.263 Sum_probs=282.3
Q ss_pred CCcccCCCHHHHHHHHhhcCCcccchhhhhhhHhHHHHhhhhhhhhhcccCCCcchhhhhccCCCCCCccccccceeecc
Q 006426 63 QVSIEVLPDECLFEIFRRLDGGEERSACASVSKRWLSLLSNIHRDEIRSLKPESEKKVELVSDAEDPDVERDGYLSRSLE 142 (645)
Q Consensus 63 ~~~~~~LP~eil~~If~~L~~~~d~~~~~~Vcr~W~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 142 (645)
.+.|+.||||||.+||+||+..+|++++++|||+|+++. . ..|..+.......
T Consensus 3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~-~-------------~~~~~l~~~~~~~------------- 55 (594)
T 2p1m_B 3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIE-R-------------WCRRKVFIGNCYA------------- 55 (594)
T ss_dssp -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHH-H-------------HHCCEEEESSTTS-------------
T ss_pred ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhh-h-------------hhceEEeeccccc-------------
Confidence 478999999999999999998899999999999999983 2 1232222111000
Q ss_pred cCCCcchhHHHHHhcccCCCCCceEEeccccCCC----------CcChHHHHHHHhcCCCccEEEeccCCCCChHHHHHH
Q 006426 143 GKKATDIRLAAIAVGTASRGGLGKLSIHGNNSTR----------GVTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEI 212 (645)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~----------~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~ 212 (645)
.... . ....++++++|+++++.... .....++..+...+++|++|+++++ .+++..+..+
T Consensus 56 ---~~~~---~---~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~~~~~~~l 125 (594)
T 2p1m_B 56 ---VSPA---T---VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRM-VVTDDCLELI 125 (594)
T ss_dssp ---SCHH---H---HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHH
T ss_pred ---cCHH---H---HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCc-EEcHHHHHHH
Confidence 0000 0 01224678888887753111 1223456677778888888888887 4777777777
Q ss_pred HhhCCCCCEEecCCCCCCCHHHHHHHHhhCCCCcEEeeccCC--CCChHHHHHHHhcCCCccEEEecCCC-CcChHHHHH
Q 006426 213 ANGCHQLEKLDLCQCPAITDRALITIAKNCPKLIDLTIESCS--SIGNEGLQAVGRFCPNLKSISIKDCR-LVGDQGIAS 289 (645)
Q Consensus 213 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~l~~l~~~~~~L~~L~l~~~~-~~~~~~~~~ 289 (645)
...+++|++|++.+|..+++.++..+..++++|++|++++|. ......+..+...+++|++|++.++. .++...+..
T Consensus 126 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~ 205 (594)
T 2p1m_B 126 AKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALER 205 (594)
T ss_dssp HHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHH
T ss_pred HHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHH
Confidence 767888888888888667777777777778888888888765 12223344455567888888888775 456666666
Q ss_pred HHHhcccccceeeeccccCCcccHHHHhhcCcccchhhccCCCC-cCchhhhh-hccccCCCCccEE-eeCCCCCCChHH
Q 006426 290 LLSSATYSLEKVKLQRLNITDVSLAVIGHYGMAVTDLFLTGLPH-VSERGFWV-MGSGHGLQKLKSL-TITSCMGVTDLG 366 (645)
Q Consensus 290 l~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-i~~~~~~~-~~~~~~~~~L~~L-~l~~~~~~~~~~ 366 (645)
+...++. |+.|++.++.. ...+..+...+++|++|.+..+.. +....+.. ......+++|+.| .+. ......
T Consensus 206 l~~~~~~-L~~L~L~~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~---~~~~~~ 280 (594)
T 2p1m_B 206 LVTRCPN-LKSLKLNRAVP-LEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFW---DAVPAY 280 (594)
T ss_dssp HHHHCTT-CCEEECCTTSC-HHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCB---TCCGGG
T ss_pred HHHhCCC-CcEEecCCCCc-HHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCc---ccchhh
Confidence 6655444 88888877621 122455555667777777655432 22222221 1123456677777 333 233444
Q ss_pred HHHHhhcCCccceEEeCCCCCCCHHHHHHHHHhcCCCCeeecccccccchhhHHHHhhhcCcCCcEEecccc--------
Q 006426 367 LEAVGKGCPNLKQFCLRKCAFLSDNGLISFAKAAFSLESLQLEECHRITQLGFFGSLLNCGEKLKALSLVSC-------- 438 (645)
Q Consensus 367 ~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-------- 438 (645)
+..+...+++|++|++++|. +++.++..+...+++|+.|++.+| +.+.++..+...+ ++|++|++.+|
T Consensus 281 l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~-~~L~~L~L~~~~~~g~~~~ 356 (594)
T 2p1m_B 281 LPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLASTC-KDLRELRVFPSEPFVMEPN 356 (594)
T ss_dssp GGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHC-TTCCEEEEECSCTTCSSCS
T ss_pred HHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHHHhC-CCCCEEEEecCcccccccC
Confidence 44444456778888887765 777777776667788888888765 4444554443333 66666666443
Q ss_pred CCCCccccccccccCCCCCcEEeccCCCCCCHHHHHHHHhcCCCCcEEEec-----CCCCCC----ccchHHHHhhcccC
Q 006426 439 LGIKDQNLGVRSVSPCKSLRSLSIRNCPGFGDASLAVLGKLCPQLQNVDLS-----GLQGVT----DAGFLPVLESCEAG 509 (645)
Q Consensus 439 ~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~-----~~~~i~----~~~~~~l~~~~~~~ 509 (645)
..+++...... ...+++|++|.+. |..+++..+..+...+|+|+.|+++ +|..++ +.++..++..++ +
T Consensus 357 ~~l~~~~l~~l-~~~~~~L~~L~~~-~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~-~ 433 (594)
T 2p1m_B 357 VALTEQGLVSV-SMGCPKLESVLYF-CRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCK-D 433 (594)
T ss_dssp SCCCHHHHHHH-HHHCTTCCEEEEE-ESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCT-T
T ss_pred CCCCHHHHHHH-HHhchhHHHHHHh-cCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCC-C
Confidence 22222111100 1124555555332 2234555555554445555555555 344444 344444444444 5
Q ss_pred ceEEEccCCCCCChHHHHHHHHhhCCCccEEecCCCCCCCHHHHHHHHhcCCcCCeeeecCCCCChHHHHHHHhcCCCCc
Q 006426 510 LAKVNLSGCVNLTDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASLAHGNYLNL 589 (645)
Q Consensus 510 L~~L~l~~c~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~l~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L 589 (645)
|++|++++ .+++.++..+.. .+++|+.|++++| .+++.++..+..+|++|++|++++|.+++.++..+. ..+++|
T Consensus 434 L~~L~L~~--~l~~~~~~~l~~-~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~-~~l~~L 508 (594)
T 2p1m_B 434 LRRLSLSG--LLTDKVFEYIGT-YAKKMEMLSVAFA-GDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANA-SKLETM 508 (594)
T ss_dssp CCEEECCS--SCCHHHHHHHHH-HCTTCCEEEEESC-CSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTG-GGGGGS
T ss_pred ccEEeecC--cccHHHHHHHHH-hchhccEeeccCC-CCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHH-HhCCCC
Confidence 55555544 445554444444 4455555555543 355555544444455555555555555544444443 234555
Q ss_pred cEEecCCCCCCCHHHHHHHHHhccccc
Q 006426 590 QILSLSGCSMVSDKSLGALRKLGQTLL 616 (645)
Q Consensus 590 ~~L~l~~c~~l~~~~~~~~~~~~~~L~ 616 (645)
+.|++++|+. +..++..+...+|.|+
T Consensus 509 ~~L~l~~~~~-~~~~~~~l~~~lp~l~ 534 (594)
T 2p1m_B 509 RSLWMSSCSV-SFGACKLLGQKMPKLN 534 (594)
T ss_dssp SEEEEESSCC-BHHHHHHHHHHCTTEE
T ss_pred CEEeeeCCCC-CHHHHHHHHHhCCCCE
Confidence 5555555442 4444444444444443
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
| >1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E | Back alignment and structure |
|---|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
| >2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A | Back alignment and structure |
|---|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 645 | ||||
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 2e-08 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 7e-08 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 4e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 7e-06 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 1e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 1e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 2e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 3e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 1e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 2e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.003 | |
| d1fs1a1 | 41 | a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [ | 7e-05 | |
| d1nexb1 | 100 | a.158.1.1 (B:270-369) Cdc4 F-box and linker domain | 5e-04 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 0.001 | |
| d1koha1 | 162 | c.10.2.3 (A:201-362) mRNA export factor tap {Human | 0.001 |
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.0 bits (128), Expect = 2e-08
Identities = 53/242 (21%), Positives = 91/242 (37%), Gaps = 12/242 (4%)
Query: 402 SLESLQLEECHRITQLGFFGSLLNCGEKLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLS 461
+ + + L S +++ + L + I+ L +S C L++LS
Sbjct: 24 GVIAFRCPRSFMDQPLAEHFSPF----RVQHMDLSNS-VIEVSTL-HGILSQCSKLQNLS 77
Query: 462 IRNCPGFGDASLAVLGKLCPQLQNVDLSGLQGVTDAGFLPVLESCEAGLAKVNLSGCVNL 521
+ D + L K L ++LSG G ++ +L SC L ++NLS C +
Sbjct: 78 LEGLR-LSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSR-LDELNLSWCFDF 134
Query: 522 TDKVVSTMAELHGWTLEMLNLDGCRKISDASLMAIADNCPLLCDLDVSKCAVTDFGIASL 581
T+K V T+ LNL G RK S ++ +V
Sbjct: 135 TEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ 194
Query: 582 AHGNYLNLQILSLSGCSMVSDKSLGALRKLGQTLLGLNLQHCNAISTNSVDMLVEQLWRC 641
LQ LSLS C + ++L L ++ TL L + + ++ +L E L
Sbjct: 195 EFFQLNYLQHLSLSRCYDIIPETLLELGEI-PTLKTLQVFGI--VPDGTLQLLKEALPHL 251
Query: 642 DV 643
+
Sbjct: 252 QI 253
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
| >d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41 | Back information, alignment and structure |
|---|
| >d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100 | Back information, alignment and structure |
|---|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 645 | |||
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.88 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.87 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.86 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.83 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.58 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.53 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.41 | |
| d1fs1a1 | 41 | Skp2 {Human (Homo sapiens) [TaxId: 9606]} | 99.27 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.26 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 98.94 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 98.88 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 98.87 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 98.82 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 98.79 | |
| d1nexb1 | 100 | Cdc4 F-box and linker domains {Baker's yeast (Sacc | 98.78 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 98.74 | |
| d2ovrb1 | 102 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 98.74 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 98.73 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 98.7 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 98.68 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 98.67 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 98.61 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 98.61 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 98.58 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 98.58 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 98.57 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 98.55 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 98.55 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 98.52 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 98.51 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 98.46 | |
| d1p22a1 | 118 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 98.45 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 98.31 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 98.27 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 98.22 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 98.14 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 98.12 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.1 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 97.94 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 97.86 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 97.82 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 97.73 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 97.17 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 96.71 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 96.68 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 96.58 |
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=9.5e-20 Score=187.12 Aligned_cols=419 Identities=20% Similarity=0.254 Sum_probs=233.2
Q ss_pred CCCceEEeccccCCCCcChHHHHHHHhcCCCccEEEeccCCCCChHHHHHH---HhhCCCCCEEecCCCCCCCHHHHHHH
Q 006426 162 GGLGKLSIHGNNSTRGVTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEI---ANGCHQLEKLDLCQCPAITDRALITI 238 (645)
Q Consensus 162 ~~l~~L~l~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~---~~~~~~L~~L~L~~~~~~~~~~~~~~ 238 (645)
++|++|+++++ .+++..+..+...+++++.|+|.+| .+++.++..+ .+.+++|++|+|+++ .+++.++..+
T Consensus 2 ~~l~~ld~~~~----~i~~~~~~~l~~~l~~l~~L~L~~~-~i~~~~~~~l~~~L~~~~~L~~LdLs~N-~i~~~~~~~l 75 (460)
T d1z7xw1 2 LDIQSLDIQCE----ELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCV 75 (460)
T ss_dssp EEEEEEEEESC----CCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHH
T ss_pred CCCCEEEeeCC----cCChHHHHHHHHhCCCCCEEEeCCC-CCCHHHHHHHHHHHhcCCCCCEEECcCC-cCChHHHHHH
Confidence 36788888877 6888888888888888999999888 5787666544 367888999999886 6888777777
Q ss_pred HhhC----CCCcEEeeccCCCCChHHHHHHH---hcCCCccEEEecCCCCcChHHHHHHHHhccc---ccceeeeccccC
Q 006426 239 AKNC----PKLIDLTIESCSSIGNEGLQAVG---RFCPNLKSISIKDCRLVGDQGIASLLSSATY---SLEKVKLQRLNI 308 (645)
Q Consensus 239 ~~~~----~~L~~L~l~~~~~~~~~~l~~l~---~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~---~L~~L~L~~~~~ 308 (645)
...+ .+|++|++++|. +++.++..+. ..+++|++|++.++. +++.++..+...... ...........+
T Consensus 76 ~~~l~~~~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~N~-i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 153 (460)
T d1z7xw1 76 LQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSL 153 (460)
T ss_dssp HHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHhcCCCCCCEEECCCCC-ccccccccccchhhcccccccccccccc-chhhhhhhhhhccccccccccccccccccc
Confidence 6643 468888888874 6666554443 347788888888765 566665555443211 111111111111
Q ss_pred CcccHHHHhhcCcccchhhccCCCCcCchhhhhhccccCCCCccEEeeCCCCCCChHHHHHH----hhcCCccceEEeCC
Q 006426 309 TDVSLAVIGHYGMAVTDLFLTGLPHVSERGFWVMGSGHGLQKLKSLTITSCMGVTDLGLEAV----GKGCPNLKQFCLRK 384 (645)
Q Consensus 309 ~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~----~~~~~~L~~L~l~~ 384 (645)
.......+. ......+.++.+.++++. ..+.+.... .........+.+..
T Consensus 154 ~~~~~~~~~-------------------------~~l~~~~~~~~~~ls~~~-~~~~~~~~~~~~l~~~~~~~~~l~~~~ 207 (460)
T d1z7xw1 154 SAASCEPLA-------------------------SVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLES 207 (460)
T ss_dssp BGGGHHHHH-------------------------HHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTT
T ss_pred chhhhcccc-------------------------cccccccccccccccccc-ccccccccccccccccccccccccccc
Confidence 111111111 111223455666666533 333222221 22223455566665
Q ss_pred CCCCCH--HHHHHHHHhcCCCCeeecccccccchhhHHHHhhhcCcCCcEEeccccCCCCccccccccccCCCCCcEEec
Q 006426 385 CAFLSD--NGLISFAKAAFSLESLQLEECHRITQLGFFGSLLNCGEKLKALSLVSCLGIKDQNLGVRSVSPCKSLRSLSI 462 (645)
Q Consensus 385 ~~~~~~--~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l 462 (645)
+....+ ..........+.++.+.+..+. ..+.+....... .......++.+++
T Consensus 208 ~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~-~~~~~~~~~~~~------------------------~~~~~~~l~~l~l 262 (460)
T d1z7xw1 208 CGVTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCPG------------------------LLHPSSRLRTLWI 262 (460)
T ss_dssp SCCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHH------------------------HTSTTCCCCEEEC
T ss_pred ccccchhhhcccccccccccccccchhhcc-ccccccchhhcc------------------------ccccccccccccc
Confidence 432221 1222333445666777666542 222222211111 0223455666666
Q ss_pred cCCCCCCHHHHHHH---HhcCCCCcEEEecCCCCCCccchHHHHhh---cccCceEEEccCCCCCChHHHHHHHH--hhC
Q 006426 463 RNCPGFGDASLAVL---GKLCPQLQNVDLSGLQGVTDAGFLPVLES---CEAGLAKVNLSGCVNLTDKVVSTMAE--LHG 534 (645)
Q Consensus 463 ~~~~~~~~~~l~~l---~~~~~~L~~L~l~~~~~i~~~~~~~l~~~---~~~~L~~L~l~~c~~l~~~~~~~l~~--~~~ 534 (645)
++|. +........ ....+.++.+++++ ..+++.++..+... ....|+.+++++| .+++.+...+.. ...
T Consensus 263 ~~n~-i~~~~~~~~~~~l~~~~~l~~l~l~~-n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~-~l~~~~~~~l~~~~~~~ 339 (460)
T d1z7xw1 263 WECG-ITAKGCGDLCRVLRAKESLKELSLAG-NELGDEGARLLCETLLEPGCQLESLWVKSC-SFTAACCSHFSSVLAQN 339 (460)
T ss_dssp TTSC-CCHHHHHHHHHHHHHCTTCCEEECTT-CCCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHC
T ss_pred cccc-cccccccccccccccccccccccccc-ccccccccchhhcccccccccccccccccc-chhhhhhhhcccccccc
Confidence 6654 333322221 22346677777766 45666665554432 1226777777775 455554443332 034
Q ss_pred CCccEEecCCCCCCCHHHHHHHHh----cCCcCCeeeecCCCCChHHHHHHHh--cCCCCccEEecCCCCCCCHHHHHHH
Q 006426 535 WTLEMLNLDGCRKISDASLMAIAD----NCPLLCDLDVSKCAVTDFGIASLAH--GNYLNLQILSLSGCSMVSDKSLGAL 608 (645)
Q Consensus 535 ~~L~~L~l~~c~~l~~~~l~~l~~----~~~~L~~L~l~~~~i~~~~~~~l~~--~~~~~L~~L~l~~c~~l~~~~~~~~ 608 (645)
++|++|+|+++ .+++.++..+.+ ..+.|++|++++|+|++.++..+.. ..+++|++|++++ +.|++.++..+
T Consensus 340 ~~L~~L~Ls~N-~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~-N~i~~~g~~~l 417 (460)
T d1z7xw1 340 RFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSN-NCLGDAGILQL 417 (460)
T ss_dssp SSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCS-SSCCHHHHHHH
T ss_pred cchhhhheeee-cccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCC-CcCCHHHHHHH
Confidence 67777777763 677666555542 3456777777777777776665542 2567777777776 45777666655
Q ss_pred HHhc----ccccccccccccCCChHH---HHHHHHhcccCccCC
Q 006426 609 RKLG----QTLLGLNLQHCNAISTNS---VDMLVEQLWRCDVLS 645 (645)
Q Consensus 609 ~~~~----~~L~~L~l~~C~~l~~~~---~~~~~~~l~~~~~l~ 645 (645)
.... ..|+.|++.+ +.++.+. ++.+.+..+...+||
T Consensus 418 ~~~l~~~~~~L~~l~l~~-~~~~~~~~~~l~~l~~~~~~l~~~~ 460 (460)
T d1z7xw1 418 VESVRQPGCLLEQLVLYD-IYWSEEMEDRLQALEKDKPSLRVIS 460 (460)
T ss_dssp HHHHTSTTCCCCEEECTT-CCCCHHHHHHHHHHHHHCTTSEEEC
T ss_pred HHHHHhCCCccCEEECCC-CCCCHHHHHHHHHHHHhCCCCEEeC
Confidence 4322 2477777777 5555443 444455556555554
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
| >d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|