Citrus Sinensis ID: 006428

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-----
MLKPQVHQSHQSLKPLVPLSKPFLRGNFHAFRALQSSSSIKNIPKIRIGISPSVNIKAITTFTQKSTQVKAFVTIKPSVGGLVSGFVDDVKDMFGKSLLLELVSAELDPKTGAEKPTIKGFAHRAGEDKDGHIIYESKFEVPPSFGEVGAILVENEHHKEMYLNDIVLDGPRNGPVNITCGSWVQSKHVNKQKRIFFTNKSYLPSQTPNGLTRLRAEELLNLRGDGQGERKTHDRIYDYDVYNDLGVPDFCSELARPVLGGKEHPYPRRCRTGRPPCETDPASESRTLINYVPRDEAFSEIKQLQFSAKTLYSVLHGLVPSLETAIIDTDLGFPYFTTIDKLFNEGVNVPMPETFKEKALWRTILPRLVKGIEDTGKEVLRFETPETMDRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIYGPPESAITKELIEKEIGGIMTVEEAIKQKKLFILDYHDLLLPYVEKVRELKGTTLYGSRTLFFSYPSGTLRPLAIELTRPPMDGKPQWKQVFTPSWHSTECWLWRLAKAHVLAHDSGYHQLVSHWLRTHCCTEPYIIATNRQLSAMHPINRLLQPHFRYTMEINALAREALVNAGGIIESTFSPGKYSMELSSVAYDKHWRFDHEALPKDLISR
cccccccccccccccccccccccccccccccccccccccccccccEEEEcccccEEEEEEEEEEEEEEEEEEEEEEccccccccccccHHHHHccccEEEEEEEEEEcccccccccccccccccccccccccEEEEEEEEEccccccEEEEEEEEcccccEEEEEEEEEcccccEEEEEEcccEEccccccccEEEEEccccccccccHHHHHHHHHHHHHHHcccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccccccEEccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHcccHHHHHHHHHccccccccccccccccccccccccEEEEEEEEEEEEcccccEEcEEEEEccccccccccccEEEcccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHccHHHHHHHcccccccccccccccccHHHHHHcHHHHHHHHHccccEEEEccccccHHHHHHHHHHHHcccccccccHHHHHcc
ccccHHccccccccccccccccccccccccccccccccHHccccEEEEEEcccccccEEEEcccccEEEEEEEEEEccHHHHHHHHHHHHHHHHcccEEEEEEEcccccccccccccHHHHHHcccccccccEEEEEEEEEccccccccEEEEEEccccEEEEEEEEEcccccccEEEEEEEEEcEHHHccccEEEEccccccHHHccHHHHHHHHHHHHHHHcccccccccccccccEEcEcccccHHHcHHHccccEcccccccccEEcccccEcccccccEcccccccccHHHccccccHHHcHHHHHHHHHHcHHHHHHHHHcccccccccHHHHHHHHHcccccccccHHHHHHHcccccccHHHHcEEccccEEEccccHHHcccccHHHcHHHHHHHHHHcccccccEEcccccccccccHHHHccccccccHHHcccccccccHHHHHHHcccEEEEEcHHHHHHHHHHHHccccccccEEEEEEEEcccccEEEEEEEEcccccHHHccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccHHHHHHHHHHccHHHHHHHHHHHccccccHHHHHcccHHHHHHHHHHHHcccccccHHcccHHHHcc
mlkpqvhqshqslkplvplskpflrgnFHAFralqssssiknipkirigispsvnIKAITTFTQKSTQVKAFVTikpsvgglvsgfvDDVKDMFGKSLLLELVSaeldpktgaekptikgfahragedkdghiiyeskfevppsfgeVGAILVEnehhkemylndivldgprngpvnitcgswvqskhvnkqkrifftnksylpsqtpngltRLRAEELLNLrgdgqgerkthdriydydvyndlgvpdfcselarpvlggkehpyprrcrtgrppcetdpasesrtlinyvprdeaFSEIKQLQFSAKTLYSVLHGLvpsletaiidtdlgfpyFTTIDKLFnegvnvpmpetfkEKALWRTILPRLVKGIEDTGKevlrfetpetmdrdkffwfrdeefgrqtlaglnpysirlvtewplrstldpeiygppesaITKELIEKEIGGIMTVEEAIKQKKLFILDYHDLLLPYVEKVRELkgttlygsrtlffsypsgtlrplaieltrppmdgkpqwkqvftpswhstECWLWRLAKAHVLAHDSGYHQLVSHWLrthcctepyiiATNRQlsamhpinrllqphfryTMEINALAREALVNAggiiestfspgkysmeLSSVAYdkhwrfdhealpkdlisr
mlkpqvhqshqslkplvplSKPFLRGNFHAFRalqssssiknipkirigispsvNIKAITTFTQKSTQVKAFVTIKPSVGGLVSGFVDDVKDMFGKSLLLELVSaeldpktgaekptiKGFAHRAGEDKDGHIIYESKFEVPPSFGEVGAILVENEHHKEMYLNDIVLDGPRNGPVNITCGSWVQSKHVNKQKRIFftnksylpsqtpnglTRLRAEELLnlrgdgqgerkthdriyDYDVYNDLGVPDFCSELARpvlggkehpyprrcrtgrppcetdpasesrTLINYVPRDEAFSEIKQLQFSAKTLYSVLHGLVPSLETAIIDTDLGFPYFTTIDKLFNEGVNVPMPETFKEKALWRTILPRlvkgiedtgkevlrfetpetmdrdkFFWFRDEEFgrqtlaglnpysIRLVTEWPLRSTLDPEIYGPPESAITKELIEKEIGGIMTVEEAIKQKKLFILDYHDLLLPYVEKVRELKGTTLYGSRTlffsypsgtlrPLAIELTRPPMDGKPQWKQVFTPSWHSTECWLWRLAKAHVLAHDSGYHQLVSHWLRTHCCTEPYIIATNRQLSAMHPINRLLQPHFRYTMEINALAREALVNAGGIIESTFSPGKYSMELSSVAYDKHWRFDHealpkdlisr
MLKPQVHQSHQSLKPLVPLSKPFLRGNFHAFRALQSSSSIKNIPKIRIGISPSVNIKAITTFTQKSTQVKAFVTIKPSVGGLVSGFVDDVKDMFGKSLLLELVSAELDPKTGAEKPTIKGFAHRAGEDKDGHIIYESKFEVPPSFGEVGAILVENEHHKEMYLNDIVLDGPRNGPVNITCGSWVQSKHVNKQKRIFFTNKSYLPSQTPNGLTRLRAEELLNLRGDGQGERKTHDRIYDYDVYNDLGVPDFCSELARPVLGGKEHPYPRRCRTGRPPCETDPASESRTLINYVPRDEAFSEIKQLQFSAKTLYSVLHGLVPSLETAIIDTDLGFPYFTTIDKLFNEGVNVPMPETFKEKALWRTILPRLVKGIEDTGKEVLRFETPETMDRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIYGPPESAITKELIEKEIGGIMTVEEAIKQKKLFILDYHDLLLPYVEKVRELKGTTLYGSRTLFFSYPSGTLRPLAIELTRPPMDGKPQWKQVFTPSWHSTECWLWRLAKAHVLAHDSGYHQLVSHWLRTHCCTEPYIIATNRQLSAMHPINRLLQPHFRYTMEINALAREALVNAGGIIESTFSPGKYSMELSSVAYDKHWRFDHEALPKDLISR
********************KPFLRGNFHAFRALQSSSSIKNIPKIRIGISPSVNIKAITTFTQKSTQVKAFVTIKPSVGGLVSGFVDDVKDMFGKSLLLELVSAEL*************F*******KDGHIIYESKFEVPPSFGEVGAILVENEHHKEMYLNDIVLDGPRNGPVNITCGSWVQSKHVNKQKRIFFTNKSYLP**************LL***********THDRIYDYDVYNDLGVPDFCSELARPVLG***************************LINYVPRDEAFSEIKQLQFSAKTLYSVLHGLVPSLETAIIDTDLGFPYFTTIDKLFNEGVNVPMPETFKEKALWRTILPRLVKGIEDTGKEVLRFETPETMDRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIYGPPESAITKELIEKEIGGIMTVEEAIKQKKLFILDYHDLLLPYVEKVRELKGTTLYGSRTLFFSYPSGTLRPLAIELTRPPMDGKPQWKQVFTPSWHSTECWLWRLAKAHVLAHDSGYHQLVSHWLRTHCCTEPYIIATNRQLSAMHPINRLLQPHFRYTMEINALAREALVNAGGIIESTFSPGKYSMELSSVAYDKHWRFDH**********
***************************************************************QKSTQVKAFVTIKPSVGGLVSGFVDDVKDMFGKSLLLEL********************HRAGEDKDGHIIYESKFEVPPSFGEVGAILVENEHHKEMYLNDIVLDGPRNGPVNITCGSWVQSKHVNKQKRIFFTNKSYLPSQTPNGLTRLRAEELLN**G**QGERKTHDRIYDYDVYNDLGVPDFCSELARPVLGGKEHPYPRR*RTGR***ETD***ESRTLINYVPRDEAFSEIKQLQFSAKTLYSVLHGLVPSLETAIIDTDLGFPYFTTIDKLFNEGVNVPMPETFKEKALWRTILPRLVKGIEDTGKEVLRFETPETMDRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIYGPPESAITKELIEKEIGGIMTVEEAIKQKKLFILDYHDLLLPYVEKVRELKGTTLYGSRTLFFSYPSGTLRPLAIEL*********Q**QVFTPSWHSTECWLWRLAKAHVLAHDSGYHQLVSHWLRTHCCTEPYIIATNRQLSAMHPINRLLQPHFRYTMEINALAREALVNAGGIIESTFSPGKYSMELSSVAYDKHWRFDHEALPKDLISR
************LKPLVPLSKPFLRGNFHAFRALQSSSSIKNIPKIRIGISPSVNIKAITTFTQKSTQVKAFVTIKPSVGGLVSGFVDDVKDMFGKSLLLELVSAELDPKTGAEKPTIKGFAHRAGEDKDGHIIYESKFEVPPSFGEVGAILVENEHHKEMYLNDIVLDGPRNGPVNITCGSWVQSKHVNKQKRIFFTNKSYLPSQTPNGLTRLRAEELLNLRGDGQGERKTHDRIYDYDVYNDLGVPDFCSELARPVLGGKEHPYPRRCRTGRPPCETDPASESRTLINYVPRDEAFSEIKQLQFSAKTLYSVLHGLVPSLETAIIDTDLGFPYFTTIDKLFNEGVNVPMPETFKEKALWRTILPRLVKGIEDTGKEVLRFETPETMDRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIYGPPESAITKELIEKEIGGIMTVEEAIKQKKLFILDYHDLLLPYVEKVRELKGTTLYGSRTLFFSYPSGTLRPLAIELTRPPMDGKPQWKQVFTPSWHSTECWLWRLAKAHVLAHDSGYHQLVSHWLRTHCCTEPYIIATNRQLSAMHPINRLLQPHFRYTMEINALAREALVNAGGIIESTFSPGKYSMELSSVAYDKHWRFDHEALPKDLISR
************LKPLVPLSKPFLRGN**********SSIKNIPKIRIGISPSVNIKAITTFTQKSTQVKAFVTIKPSVGGLVSGFVDDVKDMFGKSLLLELVSAELDPKTGAEKPTIKGFAHRAGEDKDGHIIYESKFEVPPSFGEVGAILVENEHHKEMYLNDIVLDGPRNGPVNITCGSWVQSKHVNKQKRIFFTNKSYLPSQTPNGLTRLRAEELLNLRGDGQGERKTHDRIYDYDVYNDLGVPDFCSELARPVLGGKEHPYPRRCRTGRPPCETDPASESRTLINYVPRDEAFSEIKQLQFSAKTLYSVLHGLVPSLETAIIDTDLGFPYFTTIDKLFNEGVNVPMPETFKEKALWRTILPRLVKGIEDTGKEVLRFETPETMDRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIYGPPESAITKELIEKEIGGIMTVEEAIKQKKLFILDYHDLLLPYVEKVRELKGTTLYGSRTLFFSYPSGTLRPLAIELTRPPMDGKPQWKQVFTPSWHSTECWLWRLAKAHVLAHDSGYHQLVSHWLRTHCCTEPYIIATNRQLSAMHPINRLLQPHFRYTMEINALAREALVNAGGIIESTFSPGKYSMELSSVAYDKHWRFDHEALPKDLISR
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MLKPQVHQSHQSLKPLVPLSKPFLRGNFHAFRALQSSSSIKNIPKIRIGISPSVNIKAITTFTQKSTQVKAFVTIKPSVGGLVSGFVDDVKDMFGKSLLLELVSAELDPKTGAEKPTIKGFAHRAGEDKDGHIIYESKFEVPPSFGEVGAILVENEHHKEMYLNDIVLDGPRNGPVNITCGSWVQSKHVNKQKRIFFTNKSYLPSQTPNGLTRLRAEELLNLRGDGQGERKTHDRIYDYDVYNDLGVPDFCSELARPVLGGKEHPYPRRCRTGRPPCETDPASESRTLINYVPRDEAFSEIKQLQFSAKTLYSVLHGLVPSLETAIIDTDLGFPYFTTIDKLFNEGVNVPMPETFKEKALWRTILPRLVKGIEDTGKEVLRFETPETMDRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIYGPPESAITKELIEKEIGGIMTVEEAIKQKKLFILDYHDLLLPYVEKVRELKGTTLYGSRTLFFSYPSGTLRPLAIELTRPPMDGKPQWKQVFTPSWHSTECWLWRLAKAHVLAHDSGYHQLVSHWLRTHCCTEPYIIATNRQLSAMHPINRLLQPHFRYTMEINALAREALVNAGGIIESTFSPGKYSMELSSVAYDKHWRFDHEALPKDLISR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query645 2.2.26 [Sep-21-2011]
O24370 899 Linoleate 13S-lipoxygenas N/A no 0.993 0.713 0.643 0.0
P38419 924 Lipoxygenase 7, chloropla yes no 0.880 0.614 0.581 0.0
Q84YK8 941 Probable lipoxygenase 8, no no 0.880 0.603 0.577 0.0
Q8GSM2 896 Lipoxygenase 2.3, chlorop N/A no 0.905 0.651 0.581 0.0
P38418 896 Lipoxygenase 2, chloropla yes no 0.879 0.632 0.551 0.0
P93184 936 Lipoxygenase 2.1, chlorop N/A no 0.931 0.642 0.549 0.0
Q8GSM3 932 Lipoxygenase 2.2, chlorop N/A no 0.956 0.662 0.512 1e-172
Q8H016 918 Probable lipoxygenase 6 O no no 0.950 0.667 0.461 1e-159
Q9LNR3 919 Lipoxygenase 3, chloropla no no 0.886 0.622 0.477 1e-156
Q9FNX8 926 Lipoxygenase 4, chloropla no no 0.857 0.597 0.485 1e-155
>sp|O24370|LOX21_SOLTU Linoleate 13S-lipoxygenase 2-1, chloroplastic OS=Solanum tuberosum GN=LOX2.1 PE=1 SV=1 Back     alignment and function desciption
 Score =  848 bits (2191), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/651 (64%), Positives = 506/651 (77%), Gaps = 10/651 (1%)

Query: 1   MLKPQVHQSHQSLKPLVPL--SKPFLRGNFHAFRALQSSSSIKNIPKIRI--GISPSVNI 56
           MLKPQ+ QS QS K L+P   + P    +F     L  +  +K     R+    + +   
Sbjct: 1   MLKPQLQQSSQSTKALIPSWNTNPLFLASF-PINILNKNFRLKKKNNFRVHHNYNGASTT 59

Query: 57  KAITTFTQKSTQVKAFVTIKPSVGGLVSGFVDDVKDMFGKSLLLELVSAELDPKTGAEKP 116
           KA+ + T+K+T VKA VT++  V   +S  +DD+ D+ GKSLLL +V+AELD KTG EKP
Sbjct: 60  KAVLSSTEKATGVKAVVTVQKQVNLNLSRGLDDIGDLLGKSLLLWIVAAELDHKTGIEKP 119

Query: 117 TIKGFAHRAGEDKDGHIIYESKFEVPPSFGEVGAILVENEHHKEMYLNDIVLDGPRNGPV 176
            I+ +AHR G D DG   YE+ F +P  FGEVGAIL+ENEHHKEMY+ +IV+DG  +G V
Sbjct: 120 GIRAYAHR-GRDVDGDTHYEADFVIPQDFGEVGAILIENEHHKEMYVKNIVIDGFVHGKV 178

Query: 177 NITCGSWVQSKHVNKQKRIFFTNKSYLPSQTPNGLTRLRAEELLNLRGDGQGERKTHDRI 236
            ITC SWV SK  N  KRIFFTNKSYLPSQTP+G++RLR EEL+ LRGDG GERK  +RI
Sbjct: 179 EITCNSWVHSKFDNPDKRIFFTNKSYLPSQTPSGVSRLREEELVTLRGDGIGERKVFERI 238

Query: 237 YDYDVYNDLGVPDFCSELA-RPVLGGKEHPYPRRCRTGRPPCETDPASESRTLINYVPRD 295
           YDYDVYNDLG  D  ++ A RPVLGGKE PYPRRC+TGRP  + DP SE+R+   YVPRD
Sbjct: 239 YDYDVYNDLGEADSNNDDAKRPVLGGKELPYPRRCKTGRPRSKKDPLSETRSTFVYVPRD 298

Query: 296 EAFSEIKQLQFSAKTLYSVLHGLVPSLETAIIDTDLGFPYFTTIDKLFNEGVNVPMPETF 355
           EAFSE+K + FS  T+YSVLH +VP+LE+ + D +LGFP+F  ID LFN GV+  +P   
Sbjct: 299 EAFSEVKSVAFSGNTVYSVLHAVVPALESVVTDPNLGFPHFPAIDSLFNVGVD--LPGLG 356

Query: 356 KEKALWRTILPRLVKGIEDTGKEVLRFETPETMDRDKFFWFRDEEFGRQTLAGLNPYSIR 415
            +K+    ++PRL+K I DT K+VL FE+P+ + RDKF WFRD EF RQTLAGLNPYSIR
Sbjct: 357 DKKSGLFNVVPRLIKAISDTRKDVLLFESPQLVQRDKFSWFRDVEFARQTLAGLNPYSIR 416

Query: 416 LVTEWPLRSTLDPEIYGPPESAITKELIEKEIGGIMTVEEAIKQKKLFILDYHDLLLPYV 475
           LVTEWPLRS LDP++YGPPES ITKELIEKEIG  MTVE+A++QKKLFILDYHDLLLPYV
Sbjct: 417 LVTEWPLRSKLDPKVYGPPESEITKELIEKEIGNYMTVEQAVQQKKLFILDYHDLLLPYV 476

Query: 476 EKVRELKGTTLYGSRTLFFSYPSGTLRPLAIELTRPPMDGKPQWKQVFTPS-WHSTECWL 534
            KV ELKG+ LYGSRT+FF  P GTL+PLAIELTRPP+D KPQWK+V++P+ W++T  WL
Sbjct: 477 NKVNELKGSMLYGSRTIFFLTPQGTLKPLAIELTRPPVDDKPQWKEVYSPNDWNATGAWL 536

Query: 535 WRLAKAHVLAHDSGYHQLVSHWLRTHCCTEPYIIATNRQLSAMHPINRLLQPHFRYTMEI 594
           W+LAKAHVL+HDSGYHQLVSHWLRTHCCTEPYIIA+NRQLSAMHPI RLL PHFRYTMEI
Sbjct: 537 WKLAKAHVLSHDSGYHQLVSHWLRTHCCTEPYIIASNRQLSAMHPIYRLLHPHFRYTMEI 596

Query: 595 NALAREALVNAGGIIESTFSPGKYSMELSSVAYDKHWRFDHEALPKDLISR 645
           NALAREAL+NA G+IES+F PGKY++ELSS+AY   WRFD EALP++LISR
Sbjct: 597 NALAREALINANGVIESSFFPGKYAIELSSIAYGAEWRFDQEALPQNLISR 647
Plant lipoxygenase involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence. May not be involved in the bulk production of jasmonate upon wounding. Catalyzes the hydroperoxidation of lipids containing a cis,cis-1,4-pentadiene structure. Linolenic acid is the preferred substrate, before linoleic and arachidonic acids. Has also some activity with phosphatidylglycerol, but not with galactolipids.
Solanum tuberosum (taxid: 4113)
EC: 1EC: .EC: 1EC: 3EC: .EC: 1EC: 1EC: .EC: 1EC: 2
>sp|P38419|LOXC1_ORYSJ Lipoxygenase 7, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX1 PE=2 SV=2 Back     alignment and function description
>sp|Q84YK8|LOXC2_ORYSJ Probable lipoxygenase 8, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX2 PE=2 SV=1 Back     alignment and function description
>sp|Q8GSM2|LOX23_HORVU Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare GN=LOX2.3 PE=1 SV=1 Back     alignment and function description
>sp|P38418|LOX2_ARATH Lipoxygenase 2, chloroplastic OS=Arabidopsis thaliana GN=LOX2 PE=1 SV=1 Back     alignment and function description
>sp|P93184|LOX21_HORVU Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare GN=LOX2.1 PE=1 SV=1 Back     alignment and function description
>sp|Q8GSM3|LOX22_HORVU Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare GN=LOX2.2 PE=1 SV=1 Back     alignment and function description
>sp|Q8H016|LOX6_ORYSJ Probable lipoxygenase 6 OS=Oryza sativa subsp. japonica GN=Os03g0179900 PE=2 SV=2 Back     alignment and function description
>sp|Q9LNR3|LOX3_ARATH Lipoxygenase 3, chloroplastic OS=Arabidopsis thaliana GN=LOX3 PE=2 SV=1 Back     alignment and function description
>sp|Q9FNX8|LOX4_ARATH Lipoxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=LOX4 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query645
224053392 897 predicted protein [Populus trichocarpa] 0.984 0.707 0.696 0.0
213876486 900 lipoxygenase [Camellia sinensis] 0.987 0.707 0.693 0.0
71999171 903 lipoxygenase LOX2 [Populus deltoides] 0.992 0.708 0.690 0.0
71999169 898 lipoxygenase LOX1 [Populus deltoides] 0.986 0.708 0.674 0.0
308943877 901 lipoxygenase [Camellia sinensis] 0.982 0.703 0.683 0.0
229554825 901 lipoxygenase [Camellia sinensis] 0.982 0.703 0.681 0.0
255544764 900 lipoxygenase, putative [Ricinus communis 0.989 0.708 0.676 0.0
32454712 900 lipoxygenase, partial [Nicotiana attenua 0.990 0.71 0.667 0.0
312837045 889 lipoxygenase [Vitis hybrid cultivar] 0.990 0.718 0.645 0.0
225435556 901 PREDICTED: linoleate 13S-lipoxygenase 2- 0.990 0.709 0.644 0.0
>gi|224053392|ref|XP_002297796.1| predicted protein [Populus trichocarpa] gi|222845054|gb|EEE82601.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  922 bits (2382), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/655 (69%), Positives = 526/655 (80%), Gaps = 20/655 (3%)

Query: 1   MLKPQVHQSHQSLKPLVPLSKPFLRGNFHA-FRALQSSSSIKNIPKIRIGISPSVNIKAI 59
           MLKPQ+HQSH S K    L KPF+ G+ HA F     S S K   K+R+G     +IK+I
Sbjct: 1   MLKPQLHQSHLSTKIPFLLPKPFIHGSGHASFPVYSRSLSTKANKKVRVGYKHG-SIKSI 59

Query: 60  TTFTQKSTQVKAFVTIKPSVG------GLVSGFVDDVKDMFGKSLLLELVSAELDPKTGA 113
            + TQ+ST VKA VT+K +V       G+  G +DD  D+FGK+LLLELVSAELDPKTG 
Sbjct: 60  ASVTQQSTDVKAVVTVKQTVVDFWTEIGIERG-LDDFTDLFGKTLLLELVSAELDPKTGL 118

Query: 114 EKPTIKGFAHR---AGEDKDGHIIYESKFEVPPSFGEVGAILVENEHHKEMYLNDIVLDG 170
           EKP+I+ +AH+    GED    I YE+ F VPP FGE+GAI VENEHHKEMYL+D+VLDG
Sbjct: 119 EKPSIRKYAHKIDHEGED----IKYEADFVVPPDFGEIGAIFVENEHHKEMYLHDVVLDG 174

Query: 171 PRNGPVNITCGSWVQSKHVNKQKRIFFTNKSYLPSQTPNGLTRLRAEELLNLRGDGQGER 230
              GPV++TC SW+ SK  NK+KR+FFTNKSYLPSQTP+G+ RLR EEL+ LRG+GQG+R
Sbjct: 175 FPTGPVHVTCDSWIHSKFDNKKKRLFFTNKSYLPSQTPSGIRRLREEELVLLRGNGQGQR 234

Query: 231 KTHDRIYDYDVYNDLGVPDFCSELARPVLGGKEHPYPRRCRTGRPPCETDPASESRTLIN 290
           K  DRIYDYDVYND+G PD   ELARPVLGGKEHPYPRRCRTGRP CETDP+SE R    
Sbjct: 235 KAGDRIYDYDVYNDIGNPDKKPELARPVLGGKEHPYPRRCRTGRPRCETDPSSEKRVSAF 294

Query: 291 YVPRDEAFSEIKQLQFSAKTLYSVLHGLVPSLETAIIDTDLGFPYFTTIDKLFNEGVNVP 350
           YVPRDEAFSE+KQL FSAKTLYS+ H L+PS+   I D +LGFPY T ID LF+EG+ +P
Sbjct: 295 YVPRDEAFSEVKQLTFSAKTLYSLFHALIPSIGNVIDDANLGFPYMTAIDSLFSEGIEMP 354

Query: 351 MPETFKEKALWRTILPRLVKGIEDTGKEVLRFETPETMDRDKFFWFRDEEFGRQTLAGLN 410
                 ++  W+ ++PRL K I   G +VLRFE P+ M+RDKFFWF+DEEF RQTLAGLN
Sbjct: 355 ---PLTKEGFWKEVMPRLFKVIAGGG-DVLRFEVPKPMERDKFFWFKDEEFARQTLAGLN 410

Query: 411 PYSIRLVTEWPLRSTLDPEIYGPPESAITKELIEKEIGGIMTVEEAIKQKKLFILDYHDL 470
           PYSI+ VTEWPL+S LDPEIYGPPESAIT EL+E EIGG+  V++AI++KKLFILDYHDL
Sbjct: 411 PYSIKSVTEWPLKSELDPEIYGPPESAITSELLEAEIGGVTRVDKAIREKKLFILDYHDL 470

Query: 471 LLPYVEKVRELKGTTLYGSRTLFFSYPSGTLRPLAIELTRPPMDGKPQWKQVFTPSWHST 530
           LLP+V KVRE+KGTTLYGSRT+FF  P GTLRPLAIELTRPPMDGKPQWKQVFTP +HST
Sbjct: 471 LLPFVSKVREIKGTTLYGSRTVFFLTPEGTLRPLAIELTRPPMDGKPQWKQVFTPCYHST 530

Query: 531 ECWLWRLAKAHVLAHDSGYHQLVSHWLRTHCCTEPYIIATNRQLSAMHPINRLLQPHFRY 590
            CWLWRLAKAHVLAHDSG+HQLVSHWLRTHC TEPYIIATNRQLS MHPI RLL PHFRY
Sbjct: 531 GCWLWRLAKAHVLAHDSGFHQLVSHWLRTHCVTEPYIIATNRQLSVMHPIYRLLHPHFRY 590

Query: 591 TMEINALAREALVNAGGIIESTFSPGKYSMELSSVAYDKHWRFDHEALPKDLISR 645
           TMEINALARE+L+NAGGIIE++FSPGKYSME+ S AYDK WRFDHEALP DLISR
Sbjct: 591 TMEINALARESLINAGGIIETSFSPGKYSMEICSAAYDKLWRFDHEALPNDLISR 645

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|213876486|gb|ACJ54281.1| lipoxygenase [Camellia sinensis] Back     alignment and taxonomy information
>gi|71999171|gb|AAZ57445.1| lipoxygenase LOX2 [Populus deltoides] Back     alignment and taxonomy information
>gi|71999169|gb|AAZ57444.1| lipoxygenase LOX1 [Populus deltoides] Back     alignment and taxonomy information
>gi|308943877|gb|ADO51752.1| lipoxygenase [Camellia sinensis] Back     alignment and taxonomy information
>gi|229554825|gb|ACQ76787.1| lipoxygenase [Camellia sinensis] Back     alignment and taxonomy information
>gi|255544764|ref|XP_002513443.1| lipoxygenase, putative [Ricinus communis] gi|223547351|gb|EEF48846.1| lipoxygenase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|32454712|gb|AAP83137.1| lipoxygenase, partial [Nicotiana attenuata] Back     alignment and taxonomy information
>gi|312837045|dbj|BAJ34928.1| lipoxygenase [Vitis hybrid cultivar] Back     alignment and taxonomy information
>gi|225435556|ref|XP_002285574.1| PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic [Vitis vinifera] gi|297746381|emb|CBI16437.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query645
UNIPROTKB|P38419 924 CM-LOX1 "Lipoxygenase 7, chlor 0.893 0.623 0.580 2.1e-180
TAIR|locus:2096915 896 LOX2 "lipoxygenase 2" [Arabido 0.879 0.632 0.551 4.9e-172
TAIR|locus:2030215 926 LOX4 "lipoxygenase 4" [Arabido 0.857 0.597 0.487 5.1e-145
TAIR|locus:2018848 919 LOX3 "lipoxygenase 3" [Arabido 0.886 0.622 0.477 3.6e-144
TAIR|locus:2008808 917 LOX6 "lipoxygenase 6" [Arabido 0.891 0.627 0.466 6.5e-138
TAIR|locus:2011030 859 LOX1 "lipoxygenase 1" [Arabido 0.854 0.641 0.437 2.3e-117
TAIR|locus:2087837 886 LOX5 [Arabidopsis thaliana (ta 0.776 0.565 0.438 1.6e-109
UNIPROTKB|P29250 870 LOX1.1 "Linoleate 9S-lipoxygen 0.790 0.586 0.432 3.6e-105
UNIPROTKB|H9L001 681 Gga.6903 "Uncharacterized prot 0.258 0.245 0.364 6.3e-21
ZFIN|ZDB-GENE-060623-19 676 zgc:136911 "zgc:136911" [Danio 0.282 0.269 0.361 1.3e-20
UNIPROTKB|P38419 CM-LOX1 "Lipoxygenase 7, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
 Score = 1751 (621.4 bits), Expect = 2.1e-180, P = 2.1e-180
 Identities = 344/593 (58%), Positives = 429/593 (72%)

Query:    66 STQVKAFVTIKPSVGGLVSGFVDDVKDMFGKSLLLELVSAELDPKTGAEKPTIKGFAHRA 125
             + +VKA  TIK +VG L++  +D ++D+ G+SL LELVS+ELD KTG EK T++ +AH  
Sbjct:    83 AVRVKAVATIKVTVGELINRSID-IRDLIGRSLSLELVSSELDAKTGKEKATVRSYAHNV 141

Query:   126 GEDKDGHIIYESKFEVPPSFGEVGAILVENEHHKEMYLNDIVL---DGPRNGPV-NITCG 181
              +D    + YE+ F+VP  FG +GAI+V NE  +EM+L DI L   DG  N  V  I C 
Sbjct:   142 DDDDHSVVTYEADFDVPSGFGPIGAIIVTNELRQEMFLEDINLTASDGAGNSTVLPIRCN 201

Query:   182 SWVQSKHVNKQ----KRIFFTNKSYLPSQTPNGLTRLRAEELLNLRGDGQGERKTHDRIY 237
             SWVQ K V  +    KRIFF NK+YLP QTP GL   R  +L   RGDG GER+  DR+Y
Sbjct:   202 SWVQPKSVGDEGTPSKRIFFANKTYLPGQTPAGLRSYRKNDLQQKRGDGTGEREADDRVY 261

Query:   238 DYDVYNDLGVPDFCSELARPVLGG-KEHPYPRRCRTGRPPCETDPASESRTLINYVPRDE 296
             DYDVYNDLG PD   +LARPVLGG K+ PYPRRCRTGRPP + DP SE+R    YVPRDE
Sbjct:   262 DYDVYNDLGNPDSNGDLARPVLGGNKQFPYPRRCRTGRPPSKKDPKSETRKGNVYVPRDE 321

Query:   297 AFSEIKQLQFSAKTLYSVLHGLVPSLETAIIDT---DLGFPYFTTIDKLFNEGVNVPMPE 353
              FS  K+  F  KT+ SVL   VP+ ++ ++D    +L FP F  IDKLF +GV +P  +
Sbjct:   322 EFSPEKEDYFLRKTVGSVLQAAVPAAQSLLLDKLKWNLPFPSFFVIDKLFEDGVELPGVD 381

Query:   354 TFKEKALWRTILPRLVKGIEDTGKE-VLRFETPETMDRDKFFWFRDEEFGRQTLAGLNPY 412
                      +++PRL++ + DT  E +LRFETP  + +DKF W RDEEF R+TLAG+NPY
Sbjct:   382 KLN---FLESVVPRLLEHLRDTPAEKILRFETPANIQKDKFAWLRDEEFARETLAGINPY 438

Query:   413 SIRLVTEWPLRSTLDPEIYGPPESAITKELIEKEIGGIMTVEEAIKQKKLFILDYHDLLL 472
             +I LV E+PL+S LDP +YGP ESAIT +L+E+++  +MTVEEAI QK+LF+LD+HDL L
Sbjct:   439 AIELVREFPLKSKLDPAVYGPAESAITADLLEEQMRRVMTVEEAISQKRLFMLDFHDLFL 498

Query:   473 PYVEKVRELKGTTLYGSRTLFFSYPSGTLRPLAIELTRPPMDGKPQWKQVFTPSWHSTEC 532
             PYV K+R L  TT+YGSRT+FF    GTL+ LAIELTRP    +PQW+QVFTPS  +T  
Sbjct:   499 PYVHKIRSLDHTTMYGSRTVFFLTDDGTLQLLAIELTRPASPSQPQWRQVFTPSTDATMS 558

Query:   533 WLWRLAKAHVLAHDSGYHQLVSHWLRTHCCTEPYIIATNRQLSAMHPINRLLQPHFRYTM 592
             WLWR+AKAHV AHD+G+H+L++HWLRTHC  EPYIIA NRQLS MHPI +LL+PHFRYTM
Sbjct:   559 WLWRMAKAHVRAHDAGHHELITHWLRTHCAVEPYIIAANRQLSEMHPIYQLLRPHFRYTM 618

Query:   593 EINALAREALVNAGGIIESTFSPGKYSMELSSVAYDKHWRFDHEALPKDLISR 645
              INA AR AL++AGGIIE +FSP KYSMELSSVAYDK WRFD EALP DL+ R
Sbjct:   619 RINARARSALISAGGIIERSFSPQKYSMELSSVAYDKLWRFDTEALPADLVRR 671
GO:0009607 "response to biotic stimulus" evidence=ISS;IMP
GO:0009611 "response to wounding" evidence=ISS;IMP
GO:0016166 "phytoene dehydrogenase activity" evidence=ISS;IDA
GO:0051707 "response to other organism" evidence=ISS;IDA
TAIR|locus:2096915 LOX2 "lipoxygenase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2030215 LOX4 "lipoxygenase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018848 LOX3 "lipoxygenase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008808 LOX6 "lipoxygenase 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2011030 LOX1 "lipoxygenase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087837 LOX5 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P29250 LOX1.1 "Linoleate 9S-lipoxygenase 2" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|H9L001 Gga.6903 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060623-19 zgc:136911 "zgc:136911" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P38418LOX2_ARATH1, ., 1, 3, ., 1, 1, ., 1, 20.55100.87900.6328yesno
P38419LOXC1_ORYSJ1, ., 1, 3, ., 1, 1, ., 1, 20.58110.88060.6147yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.13.11LOW CONFIDENCE prediction!
3rd Layer1.13.11.120.824

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_I000375
hypothetical protein; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding (By similarity) (897 aa)
(Populus trichocarpa)
Predicted Functional Partners:
CYP74A1
cytochrome P450 allene oxide synthase (EC-4.2.1.92) (526 aa)
     •• 0.902
gw1.XVIII.245.1
SubName- Full=Putative uncharacterized protein; (138 aa)
     •  0.899
gw1.XVI.1394.1
hypothetical protein (823 aa)
     •  0.899
gw1.40.286.1
phospholipase A1 (EC-3.1.1.32) (357 aa)
     •  0.899
fgenesh4_pg.C_LG_II001255
phospholipase A1 (EC-3.1.1.32) (367 aa)
     •  0.899
eugene3.00060391
hypothetical protein (856 aa)
     •  0.899
CYP74B7
cytochrome P450 fatty acid hydroperoxide lyase (492 aa)
     •  0.899
estExt_fgenesh4_pg.C_LG_VIII0936
SubName- Full=Putative uncharacterized protein; (642 aa)
     •  0.899
grail3.0064002701
SubName- Full=Putative uncharacterized protein; (382 aa)
      • 0.502

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query645
PLN02305 918 PLN02305, PLN02305, lipoxygenase 0.0
PLN02264 919 PLN02264, PLN02264, lipoxygenase 0.0
PLN02337 866 PLN02337, PLN02337, lipoxygenase 0.0
pfam00305 667 pfam00305, Lipoxygenase, Lipoxygenase 0.0
cd01751137 cd01751, PLAT_LH2, PLAT/ LH2 domain of plant lipox 2e-51
smart00308105 smart00308, LH2, Lipoxygenase homology 2 (beta bar 1e-15
pfam01477115 pfam01477, PLAT, PLAT/LH2 domain 2e-09
>gnl|CDD|215174 PLN02305, PLN02305, lipoxygenase Back     alignment and domain information 
 Score =  659 bits (1701), Expect = 0.0
 Identities = 309/615 (50%), Positives = 413/615 (67%), Gaps = 21/615 (3%)

Query: 42  NIPKIRIGISPSVNIKAITTFTQKSTQVKAFVTIKPSVGGLVSGFVDDVKDMF----GKS 97
           N       + PS   K           V+A +TI+  +   ++   +D  + F    G+ 
Sbjct: 62  NKSVDGSSLLPSSRSKY-----AGGIDVRAVITIRKKIKEKITEKFEDQWEYFMNGIGQG 116

Query: 98  LLLELVSAELDPKTGAEKP---TIKGFAHRAGEDKDGHII-YESKFEVPPSFGEVGAILV 153
           +L++LVS E+DP TG+ K    +++G+  +     D HI+ Y + F VP  FG+ GA+LV
Sbjct: 117 ILIQLVSEEIDPVTGSGKSVESSVRGWLPKP--SNDPHIVEYAADFTVPFDFGKPGAVLV 174

Query: 154 ENEHHKEMYLNDIVLDGPRNGPVNITCGSWVQSKHVNKQKRIFFTNKSYLPSQTPNGLTR 213
            N H KE YL +IV+ G  +GP+     +W+ S+  N + RI F N++YLPSQTP G+  
Sbjct: 175 TNLHGKEFYLMEIVIHGFDDGPIFFPANTWIHSRKDNPESRIIFRNQAYLPSQTPPGIKD 234

Query: 214 LRAEELLNLRGDGQGERKTHDRIYDYDVYNDLGVPDFCSELARPVLGGKEHPYPRRCRTG 273
           LR E+LL+LRG+G+GERK HDRIYDY  YNDLG PD   +LARPVLGG+E PYPRRCRTG
Sbjct: 235 LRREDLLSLRGNGKGERKPHDRIYDYAPYNDLGNPDKDEDLARPVLGGEEWPYPRRCRTG 294

Query: 274 RPPCETDPASESRTLIN---YVPRDEAFSEIKQLQFSAKTLYSVLHGLVPSLETAIIDTD 330
           RPP + DP  ESR       YVPRDE F EIK+  FSA  L ++LH L+PS+  A+  +D
Sbjct: 295 RPPTKKDPLCESRIEKPHPVYVPRDETFEEIKRNTFSAGRLKALLHNLIPSIAAALSSSD 354

Query: 331 LGFPYFTTIDKLFNEGVNVPMPETFKEKALWRTILPRLVKGIEDTGKEVLRFETPETMDR 390
           + F  F+ IDKL+N+G+ +   E   +       L   +K +    + +L+++ P  + R
Sbjct: 355 IPFTCFSDIDKLYNDGILLKTEE--PKDIGLNPFLGNFMKQVLSVSERLLKYDIPAVIKR 412

Query: 391 DKFFWFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIYGPPESAITKELIEKEIGGI 450
           D+F W RD EF RQ LAG+NP +I ++ E+P+ S LDP +YGPPESA+T+ELIE+E+ G 
Sbjct: 413 DRFAWLRDNEFARQALAGVNPVNIEILKEFPILSKLDPAVYGPPESALTEELIERELEG- 471

Query: 451 MTVEEAIKQKKLFILDYHDLLLPYVEKVRELKGTTLYGSRTLFFSYPSGTLRPLAIELTR 510
           MTVE+AI++K+LFILDYHD+LLP++EK+  L     Y SRT+FF   +G LRP+AIEL+ 
Sbjct: 472 MTVEKAIEEKRLFILDYHDMLLPFIEKMNSLPERKAYASRTVFFYSKAGALRPIAIELSL 531

Query: 511 PPMDGKPQWKQVFTPSWHSTECWLWRLAKAHVLAHDSGYHQLVSHWLRTHCCTEPYIIAT 570
           PP    P  K V+T    +T  W+W+LAKAHV ++D+G HQLV+HWLRTH C EPYIIAT
Sbjct: 532 PPTPSSPGNKFVYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLRTHACMEPYIIAT 591

Query: 571 NRQLSAMHPINRLLQPHFRYTMEINALAREALVNAGGIIESTFSPGKYSMELSSVAYDKH 630
           +RQLSAMHPI +LL PH RYT+EINALAR++L+N GGIIE+ FSPGKY+MELSS AY   
Sbjct: 592 HRQLSAMHPIYKLLHPHMRYTLEINALARQSLINGGGIIEACFSPGKYAMELSSAAYKSM 651

Query: 631 WRFDHEALPKDLISR 645
           WRFD EALP DLI R
Sbjct: 652 WRFDMEALPADLIRR 666

Length = 918
>gnl|CDD|215148 PLN02264, PLN02264, lipoxygenase Back     alignment and domain information
>gnl|CDD|215193 PLN02337, PLN02337, lipoxygenase Back     alignment and domain information
>gnl|CDD|215847 pfam00305, Lipoxygenase, Lipoxygenase Back     alignment and domain information
>gnl|CDD|238849 cd01751, PLAT_LH2, PLAT/ LH2 domain of plant lipoxygenase related proteins Back     alignment and domain information
>gnl|CDD|214608 smart00308, LH2, Lipoxygenase homology 2 (beta barrel) domain Back     alignment and domain information
>gnl|CDD|216521 pfam01477, PLAT, PLAT/LH2 domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 645
PLN02305 918 lipoxygenase 100.0
PLN02264 919 lipoxygenase 100.0
PLN02337 866 lipoxygenase 100.0
PF00305 667 Lipoxygenase: Lipoxygenase; InterPro: IPR013819 Li 100.0
cd01751137 PLAT_LH2 PLAT/ LH2 domain of plant lipoxygenase re 100.0
smart00308105 LH2 Lipoxygenase homology 2 (beta barrel) domain. 99.21
PF01477113 PLAT: PLAT/LH2 domain; InterPro: IPR001024 Lipoxyg 98.85
cd00113116 PLAT PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin 98.58
cd02899109 PLAT_SR Scavenger receptor protein. A subfamily of 98.28
cd01753113 PLAT_LOX PLAT domain of 12/15-lipoxygenase. As a u 97.9
cd01756120 PLAT_repeat PLAT/LH2 domain repeats of family of p 97.9
cd01757114 PLAT_RAB6IP1 PLAT/LH2 domain present in RAB6 inter 97.67
cd01752120 PLAT_polycystin PLAT/LH2 domain of polycystin-1 li 97.42
cd01754129 PLAT_plant_stress PLAT/LH2 domain of plant-specifi 97.34
>PLN02305 lipoxygenase Back     alignment and domain information 
Probab=100.00  E-value=1e-185  Score=1563.90  Aligned_cols=575  Identities=52%  Similarity=0.932  Sum_probs=537.3

Q ss_pred             ceeeeEEEeecc-eeeeEEEEeeccccCccccccchhhhccCCcEEEEEEeceeCCCCCCcc---ceeccccccCCCCCC
Q 006428           55 NIKAITTFTQKS-TQVKAFVTIKPSVGGLVSGFVDDVKDMFGKSLLLELVSAELDPKTGAEK---PTIKGFAHRAGEDKD  130 (645)
Q Consensus        55 ~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~d~~~~~~g~~v~lqLvS~~~~~~~~~~~---~~~~~~~~~~~~~~~  130 (645)
                      +|||+|++|+++ ++++++.          .+++|+++|++|++|+|||||++++|+||+||   ++|++|+++ +...+
T Consensus        83 ~i~~~v~~~~~~~~~~~~~~----------~~~~d~~~~~~g~~v~lqLvS~~~~~~~g~gk~~~~~l~~~~~~-~~~~~  151 (918)
T PLN02305         83 DVRAVITIRKKIKEKITEKF----------EDQWEYFMNGIGQGILIQLVSEEIDPVTGSGKSVESSVRGWLPK-PSNDP  151 (918)
T ss_pred             eEEEEEEEEeecccchhhcc----------cchhhHHHHhhCCeEEEEEEeccccCCCCCcccccchhhccccC-CCCCC
Confidence            567777777665 5555544          38899999999999999999999999998555   899999986 33226


Q ss_pred             CcEEEEEEEecCCCCCceeEEEEEecCCCceeeeeEEEccCCCCcEEEEeccceecCCCCCcceEEeeCcccCCCCCChH
Q 006428          131 GHIIYESKFEVPPSFGEVGAILVENEHHKEMYLNDIVLDGPRNGPVNITCGSWVQSKHVNKQKRIFFTNKSYLPSQTPNG  210 (645)
Q Consensus       131 ~~~~~~~~f~~~~~~G~pgai~v~n~~~~e~fl~~i~l~~~p~g~i~F~cnsWV~~~~~~~~~riff~nk~yLP~~tp~~  210 (645)
                      ++++|+++|+|+++||+||||+|+|.|++||||++|||+++|+|+|||+||||||+.++|+++||||+||+|||++||++
T Consensus       152 ~~~~~~~~f~~~~~fG~pGA~~v~N~h~~ef~l~~i~l~~~p~g~v~f~cnSWv~~~~~~~~~RiFF~nk~ylP~~tP~~  231 (918)
T PLN02305        152 HIVEYAADFTVPFDFGKPGAVLVTNLHGKEFYLMEIVIHGFDDGPIFFPANTWIHSRKDNPESRIIFRNQAYLPSQTPPG  231 (918)
T ss_pred             CceEEEEEEeeccccCCcceEEEEeCCCceEEEEEEEEecCCCCeEEEeccCccccCCCCCCCceEecCCCcCcccCCHH
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhhcCCCCCCccccCeEEeccccCCCCCCCCCCccccccCCCCCCCCccccCCCCCCCCCCCCCCCccc--
Q 006428          211 LTRLRAEELLNLRGDGQGERKTHDRIYDYDVYNDLGVPDFCSELARPVLGGKEHPYPRRCRTGRPPCETDPASESRTL--  288 (645)
Q Consensus       211 L~~~R~~EL~~lRg~g~g~rk~~dRiYdyd~YnDlG~Pd~~~~l~RpvlGg~~~PyPRR~rTgR~~~~~dp~~e~r~~--  288 (645)
                      |++|||+||++|||||+||||+||||||||||||||+||++++++||||||++|||||||||||+||++||.+|||..  
T Consensus       232 l~~~Re~eL~~lRGdg~Gerk~~dRiYdYd~YNDLG~Pd~~~~~~RpvLGG~~~PYPRR~RTGR~~t~~Dp~~Esr~~~~  311 (918)
T PLN02305        232 IKDLRREDLLSLRGNGKGERKPHDRIYDYAPYNDLGNPDKDEDLARPVLGGEEWPYPRRCRTGRPPTKKDPLCESRIEKP  311 (918)
T ss_pred             HHHHHHHHHHHhcCCCCCcCCccccccchhhhccCCCCCCCccccCcccCCCCCCCCCcCcCCCCCCCCCCcccccccCC
Confidence            999999999999999999999999999999999999999999999999999779999999999999999999999954  


Q ss_pred             -cCccCCCcccchhhhhchhhhHHHHHHhhhhhhhhhhhccCCCCCCCHHHHHHHhcCCCCCCCCchhhHHHHHhhh-hh
Q 006428          289 -INYVPRDEAFSEIKQLQFSAKTLYSVLHGLVPSLETAIIDTDLGFPYFTTIDKLFNEGVNVPMPETFKEKALWRTI-LP  366 (645)
Q Consensus       289 -~~yvPrDe~Fs~~K~~~F~~~~l~~~~~~~~p~l~~~~~~~~~~f~sf~Di~~Ly~~g~~l~~~~~~~~~~~~~~~-~~  366 (645)
                       .+||||||+|+++|++||+++++|+++|.++|.|+++++.+..+|+||+||++||++|+++|.    ...+..+.+ +|
T Consensus       312 ~~~YvPrDE~f~~~K~~~f~~~~lk~~~~~~~p~~~~~~~~~~~~F~~f~~i~~Ly~~g~~l~~----~~~~~~~~~p~~  387 (918)
T PLN02305        312 HPVYVPRDETFEEIKRNTFSAGRLKALLHNLIPSIAAALSSSDIPFTCFSDIDKLYNDGILLKT----EEPKDIGLNPFL  387 (918)
T ss_pred             CCcCCCCCCCcccchhhhHHHHHHHHHHHhhhhHHHHhcCCCCCCCCCHHHHHHHhccCCcCCc----hhhhhhhcCCch
Confidence             479999999999999999999999999999999999998889999999999999999999985    110122223 42


Q ss_pred             -hhhccccccCcceecccCccccccCcccccccHHHHHhhhcCCCccccccccCCCCCCCCCCccCCCCCCcccHHHHHH
Q 006428          367 -RLVKGIEDTGKEVLRFETPETMDRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIYGPPESAITKELIEK  445 (645)
Q Consensus       367 -~i~e~~~~~~~~~l~~p~P~~i~~d~~~W~~DeeFarQ~LaG~NP~~I~r~~e~P~~s~Ldp~~yg~~~s~it~e~i~~  445 (645)
                       .+.+.+++++|.+||||+|++|++|+++|++|+|||||+|||+||++|++|++||++|+|||++||+++|+||+|||+.
T Consensus       388 ~~~~~~i~~~~~~~lkf~~P~vi~~d~~~W~~DeeFaRQ~LaGvNP~~I~rl~efP~~skldp~~yG~~~s~iT~e~ve~  467 (918)
T PLN02305        388 GNFMKQVLSVSERLLKYDIPAVIKRDRFAWLRDNEFARQALAGVNPVNIEILKEFPILSKLDPAVYGPPESALTEELIER  467 (918)
T ss_pred             HHHHHHhhhcccccccCCCcceeecccccccChHHHHHHHHcCCCChheeeccccCCccccCccccCCcCCCcCHHHHHh
Confidence             3333447889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCcccHHHHHhcCcEEEecccccccchhhhcccCCCceeeeeeeeEeeCCCCceeeEEEEecCCCCCCCCCCceeeeC
Q 006428          446 EIGGIMTVEEAIKQKKLFILDYHDLLLPYVEKVRELKGTTLYGSRTLFFSYPSGTLRPLAIELTRPPMDGKPQWKQVFTP  525 (645)
Q Consensus       446 ~L~g~~tl~eal~~grLFi~Dy~d~~lp~l~~in~~~g~~~YAp~~Lffl~~dG~L~PIAIqL~~~~~~~~~~~~~VfTP  525 (645)
                      .|+| +||+|||++|||||+||||++|||+.++|.++++++|||+||||++++|+|+||||||+++++++++.+++||||
T Consensus       468 ~L~G-~TleeAl~~~rLFIlDy~dl~lp~l~~in~l~~~~~YAprtLffL~~dG~L~PlAIqL~~~p~~~~p~~~~VftP  546 (918)
T PLN02305        468 ELEG-MTVEKAIEEKRLFILDYHDMLLPFIEKMNSLPERKAYASRTVFFYSKAGALRPIAIELSLPPTPSSPGNKFVYTH  546 (918)
T ss_pred             hcCC-CcHHHHHHcCCEEEEechhhhCcccccccccCCcccccceeEEEECCCCCEeeEEEEeeCCCCCCCCCcceeeCC
Confidence            9998 999999999999999999999999999999999999999999999999999999999999988777777899999


Q ss_pred             CCCCCCchhHHHHHHHHhhhhhhhHHHHHHHhhhccchhhHHHHhhcccCccCchhhhccccccccccchHHHHhhcccC
Q 006428          526 SWHSTECWLWRLAKAHVLAHDSGYHQLVSHWLRTHCCTEPYIIATNRQLSAMHPINRLLQPHFRYTMEINALAREALVNA  605 (645)
Q Consensus       526 ~d~~~~~~~W~LAK~~v~~aD~~~HqlisHllrTHlv~EpfiIAt~RqLs~~HPI~kLL~PHfr~Tl~IN~lAR~~LI~~  605 (645)
                      .++++++|.|+||||||++||++|||+|+||++||+||||||||||||||++|||||||+||||+||+||++||++|||+
T Consensus       547 ~~d~~~~w~W~LAK~~V~~aD~~~HQlisHlLrTHlv~EpfiIAT~RqLs~~HPI~kLL~PHfr~TL~INalAR~~LIn~  626 (918)
T PLN02305        547 GHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLRTHACMEPYIIATHRQLSAMHPIYKLLHPHMRYTLEINALARQSLING  626 (918)
T ss_pred             CCCCCCchHHHHHHHHHHhccHHHHHHHHHHhhHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            87777899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceecccccCchhHHHHHHHHHccCccCCCCCchhhhhcC
Q 006428          606 GGIIESTFSPGKYSMELSSVAYDKHWRFDHEALPKDLISR  645 (645)
Q Consensus       606 gGiie~~f~~G~~~~elss~~Yk~~w~F~~~~LP~DL~~R  645 (645)
                      ||++|++|++|+|+|||++++|++.|+|++++||+||++|
T Consensus       627 gGiie~~fspg~~~~elss~aYk~~w~Fd~~~LP~DL~kR  666 (918)
T PLN02305        627 GGIIEACFSPGKYAMELSSAAYKSMWRFDMEALPADLIRR  666 (918)
T ss_pred             CCceeeeeccchhHHHHHHHHHHhcCcCccccCHHHHHHc
Confidence            9999999999999999999999988999999999999998

>PLN02264 lipoxygenase Back     alignment and domain information
>PLN02337 lipoxygenase Back     alignment and domain information
>PF00305 Lipoxygenase: Lipoxygenase; InterPro: IPR013819 Lipoxygenases (1 Back     alignment and domain information
>cd01751 PLAT_LH2 PLAT/ LH2 domain of plant lipoxygenase related proteins Back     alignment and domain information
>smart00308 LH2 Lipoxygenase homology 2 (beta barrel) domain Back     alignment and domain information
>PF01477 PLAT: PLAT/LH2 domain; InterPro: IPR001024 Lipoxygenases (1 Back     alignment and domain information
>cd00113 PLAT PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain Back     alignment and domain information
>cd02899 PLAT_SR Scavenger receptor protein Back     alignment and domain information
>cd01753 PLAT_LOX PLAT domain of 12/15-lipoxygenase Back     alignment and domain information
>cd01756 PLAT_repeat PLAT/LH2 domain repeats of family of proteins with unknown function Back     alignment and domain information
>cd01757 PLAT_RAB6IP1 PLAT/LH2 domain present in RAB6 interacting protein 1 (Rab6IP1)_like family Back     alignment and domain information
>cd01752 PLAT_polycystin PLAT/LH2 domain of polycystin-1 like proteins Back     alignment and domain information
>cd01754 PLAT_plant_stress PLAT/LH2 domain of plant-specific single domain protein family with unknown function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query645
2iuj_A 853 Crystal Structure Of Soybean Lipoxygenase-B Length 1e-129
1ik3_A 857 Lipoxygenase-3 (Soybean) Complex With 13(S)-Hydrope 1e-126
1rov_A 857 Lipoxygenase-3 Treated With Cumene Hydroperoxide Le 1e-124
2iuk_A 864 Crystal Structure Of Soybean Lipoxygenase-D Length 1e-122
2sbl_B 839 The Three-Dimensional Structure Of An Arachidonic A 1e-121
1fgt_A 839 Lipoxygenase-1 (Soybean) At 100k, Q697n Mutant Leng 1e-121
3pzw_A 839 Soybean Lipoxygenase-1 - Re-Refinement Length = 839 1e-121
1fgr_A 839 Lipoxygenase-1 (Soybean) At 100k, Q697e Mutant Leng 1e-121
1fgm_A 839 Lipoxygenase-1 (Soybean) At 100k, N694h Mutant Leng 1e-121
1y4k_A 839 Lipoxygenase-1 (Soybean) At 100k, N694g Mutant Leng 1e-121
3bnd_A 839 Lipoxygenase-1 (Soybean), I553v Mutant Length = 839 1e-121
3bnb_A 839 Lipoxygenase-1 (Soybean) I553l Mutant Length = 839 1e-121
1fgq_A 839 Lipoxygenase-1 (Soybean) At 100k, Q495e Mutant Leng 1e-121
3bne_A 839 Lipoxygenase-1 (Soybean) I553a Mutant Length = 839 1e-120
1fgo_A 839 Lipoxygenase-1 (Soybean) At 100k, Q495a Mutant Leng 1e-120
3bnc_A 839 Lipoxygenase-1 (Soybean) I553g Mutant Length = 839 1e-120
3v98_A 691 S663d Stable-5-Lox Length = 691 2e-23
3o8y_A 691 Stable-5-Lipoxygenase Length = 691 2e-23
3v92_B 691 S663a Stable-5-Lox Length = 691 2e-23
3vf1_A 698 Structure Of A Calcium-Dependent 11r-Lipoxygenase S 2e-22
3fg1_A 696 Crystal Structure Of Delta413-417:gs Lox Length = 6 2e-20
3dy5_A 1066 Allene Oxide Synthase 8r-Lipoxygenase From Plexaura 2e-20
2fnq_A 699 Insights From The X-Ray Crystal Structure Of Coral 4e-20
3fg4_A 696 Crystal Structure Of Delta413-417:gs I805a Lox Leng 5e-20
3fg3_A 696 Crystal Structure Of Delta413-417:gs I805w Lox Leng 1e-19
3rde_A 573 Crystal Structure Of The Catalytic Domain Of Porcin 5e-19
1lox_A 662 Rabbit Reticulocyte 15-Lipoxygenase Length = 662 1e-18
2p0m_A 662 Revised Structure Of Rabbit Reticulocyte 15s-Lipoxy 1e-18
3d3l_A 541 The 2.6 A Crystal Structure Of The Lipoxygenase Dom 1e-15
>pdb|2IUJ|A Chain A, Crystal Structure Of Soybean Lipoxygenase-B Length = 853 Back     alignment and structure 
Iteration: 1

 Score =  457 bits (1176), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 244/516 (47%), Positives = 322/516 (62%), Gaps = 13/516 (2%)
Query: 135 YESKFEVPPSFGEVGAILVENEHHKEMYLNDIVL-DGPRNGPVNITCGSWVQSKHVNKQK 193
           Y+++F+    FG  GA  ++N    E YL  ++L D P +G ++  C SWV +    K  
Sbjct: 95  YDAQFDWDSDFGIPGAFYIKNYMQNEFYLKSLILEDIPNHGTIHFICNSWVYNSKHYKTD 154
Query: 194 RIFFTNKSYLPSQTPNGLTRLRAEELLNLRGDGQGERKTHDRIYDYDVYNDLGVPDFCSE 253
           RIFF N +YLPS+TP  L + R EEL N+RGDG GERK  DRIYDYDVYNDLG PD   +
Sbjct: 155 RIFFANNTYLPSETPAPLVKYREEELKNVRGDGTGERKEWDRIYDYDVYNDLGDPDKGEK 214
Query: 254 LARPVLGGKEHPYPRRCRTGRPPCETDPASESRTLINYVPRDEAFSEIKQLQFSAKTLYS 313
            ARPVLGG   PYPRR RTGR     DP SE      Y+PRDEAF  +K   F A  + S
Sbjct: 215 YARPVLGGSALPYPRRGRTGRGKTRKDPNSEKPGDFVYLPRDEAFGHLKSSDFLAYGIKS 274
Query: 314 VLHGLVPSLETAIIDT--DLGFPYFTTIDKLFNEGVNVPMPETFKEKALWRTILPRLVKG 371
           V   ++P L  A       L F  F  + KL+  GV   +P  F       T +P + + 
Sbjct: 275 VAQDVLPVLTDAFDGNLLSLDFDNFAEVRKLYEGGVT--LPTNFLSNI---TPIPIIKEL 329
Query: 372 IEDTGKEVLRFETPETMDRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIY 431
               G++ L++  P+ M  DK  W  DEEF R+T+AGLNP  I+++ E+PL S LD + Y
Sbjct: 330 FRTDGEQFLKYPPPKVMQVDKSAWMTDEEFARETIAGLNPNVIKIIEEFPLSSKLDTQAY 389
Query: 432 GPPESAITKELIEKEIGGIMTVEEAIKQKKLFILDYHDLLLPYVEKVRELKGTTLYGSRT 491
           G     ITKE +E  +GG +TVE+AI+ KKLFILD+HD L+PY+ K+     T  Y +RT
Sbjct: 390 GDHTCIITKEHLEPNLGG-LTVEQAIQNKKLFILDHHDYLIPYLRKINA-NTTKTYATRT 447
Query: 492 LFFSYPSGTLRPLAIELTRPPMDGKPQW--KQVFTPSWHSTECWLWRLAKAHVLAHDSGY 549
           +FF    GTL PLAIEL++P   G+      +V+ PS    E ++W LAKA+V+ +D+ Y
Sbjct: 448 IFFLKNDGTLTPLAIELSKPHPQGEEYGPVSEVYVPSSEGVEAYIWLLAKAYVVVNDACY 507
Query: 550 HQLVSHWLRTHCCTEPYIIATNRQLSAMHPINRLLQPHFRYTMEINALAREALVNAGGII 609
           HQ++SHWL TH   EP++IATNR LS +HPI +LL PH+R TM IN+LAR++LVNA GII
Sbjct: 508 HQIISHWLNTHAVVEPFVIATNRHLSVVHPIYKLLFPHYRDTMNINSLARKSLVNADGII 567
Query: 610 ESTFSPGKYSMELSSVAYDKHWRFDHEALPKDLISR 645
           E TF  G+YS+E+S+V Y K W F  +ALP DL+ R
Sbjct: 568 EKTFLWGRYSLEMSAVIY-KDWVFTDQALPNDLVKR 602
>pdb|1IK3|A Chain A, Lipoxygenase-3 (Soybean) Complex With 13(S)-Hydroperoxy- 9(Z),11(E)-Octadecadienoic Acid Length = 857 Back     alignment and structure
>pdb|1ROV|A Chain A, Lipoxygenase-3 Treated With Cumene Hydroperoxide Length = 857 Back     alignment and structure
>pdb|2IUK|A Chain A, Crystal Structure Of Soybean Lipoxygenase-D Length = 864 Back     alignment and structure
>pdb|2SBL|B Chain B, The Three-Dimensional Structure Of An Arachidonic Acid 15- Lipoxygenase Length = 839 Back     alignment and structure
>pdb|1FGT|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q697n Mutant Length = 839 Back     alignment and structure
>pdb|3PZW|A Chain A, Soybean Lipoxygenase-1 - Re-Refinement Length = 839 Back     alignment and structure
>pdb|1FGR|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q697e Mutant Length = 839 Back     alignment and structure
>pdb|1FGM|A Chain A, Lipoxygenase-1 (Soybean) At 100k, N694h Mutant Length = 839 Back     alignment and structure
>pdb|1Y4K|A Chain A, Lipoxygenase-1 (Soybean) At 100k, N694g Mutant Length = 839 Back     alignment and structure
>pdb|3BND|A Chain A, Lipoxygenase-1 (Soybean), I553v Mutant Length = 839 Back     alignment and structure
>pdb|3BNB|A Chain A, Lipoxygenase-1 (Soybean) I553l Mutant Length = 839 Back     alignment and structure
>pdb|1FGQ|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q495e Mutant Length = 839 Back     alignment and structure
>pdb|3BNE|A Chain A, Lipoxygenase-1 (Soybean) I553a Mutant Length = 839 Back     alignment and structure
>pdb|1FGO|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q495a Mutant Length = 839 Back     alignment and structure
>pdb|3BNC|A Chain A, Lipoxygenase-1 (Soybean) I553g Mutant Length = 839 Back     alignment and structure
>pdb|3V98|A Chain A, S663d Stable-5-Lox Length = 691 Back     alignment and structure
>pdb|3O8Y|A Chain A, Stable-5-Lipoxygenase Length = 691 Back     alignment and structure
>pdb|3V92|B Chain B, S663a Stable-5-Lox Length = 691 Back     alignment and structure
>pdb|3VF1|A Chain A, Structure Of A Calcium-Dependent 11r-Lipoxygenase Suggests A Mechanism For Ca-Regulation Length = 698 Back     alignment and structure
>pdb|3FG1|A Chain A, Crystal Structure Of Delta413-417:gs Lox Length = 696 Back     alignment and structure
>pdb|3DY5|A Chain A, Allene Oxide Synthase 8r-Lipoxygenase From Plexaura Homomalla Length = 1066 Back     alignment and structure
>pdb|2FNQ|A Chain A, Insights From The X-Ray Crystal Structure Of Coral 8r- Lipoxygenase: Calcium Activation Via A C2-Like Domain And A Structural Basis Of Product Chirality Length = 699 Back     alignment and structure
>pdb|3FG4|A Chain A, Crystal Structure Of Delta413-417:gs I805a Lox Length = 696 Back     alignment and structure
>pdb|3FG3|A Chain A, Crystal Structure Of Delta413-417:gs I805w Lox Length = 696 Back     alignment and structure
>pdb|3RDE|A Chain A, Crystal Structure Of The Catalytic Domain Of Porcine Leukocyte 12- Lipoxygenase Length = 573 Back     alignment and structure
>pdb|1LOX|A Chain A, Rabbit Reticulocyte 15-Lipoxygenase Length = 662 Back     alignment and structure
>pdb|2P0M|A Chain A, Revised Structure Of Rabbit Reticulocyte 15s-Lipoxygenase Length = 662 Back     alignment and structure
>pdb|3D3L|A Chain A, The 2.6 A Crystal Structure Of The Lipoxygenase Domain Of Human Arachidonate 12-Lipoxygenase, 12s-Type (Casp Target) Length = 541 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query645
1f8n_A 839 Lipoxygenase-1; dioxygenase, metalloprotein, fatty 0.0
2iuk_A 864 SEED lipoxygenase; iron, dioxygenase, metal-bindin 0.0
2iuj_A 853 Lipoxygenase L-5; dioxygenase, metal-binding, oxid 0.0
3dy5_A 1066 Allene oxide synthase-lipoxygenase protein; fusion 2e-90
3rde_A 573 Arachidonate 12-lipoxygenase, 12S-type; C-terminal 1e-89
1lox_A 662 15-lipoxygenase, 15LOX; oxidoreductase, 15LO_depot 8e-88
3v98_A 691 Arachidonate 5-lipoxygenase; dioxygenase, oxidored 9e-88
3fg1_A 696 Allene oxide synthase-lipoxygenase protein; arichi 4e-85
3d3l_A 541 Arachidonate 12-lipoxygenase, 12S-type; ALOX12, ir 4e-80
3vf1_A 698 11R-lipoxygenase; LOX, PLAT, beta sandwich, C2-lik 2e-79
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-13
>1f8n_A Lipoxygenase-1; dioxygenase, metalloprotein, fatty acids, oxidoreductase; 1.40A {Glycine max} SCOP: a.119.1.1 b.12.1.1 PDB: 1yge_A 2sbl_B 3pzw_A 1fgq_A 1fgr_A 3bnd_A 1fgt_A 1fgm_A 3bnb_A 1fgo_A 1y4k_A 3bne_A 3bnc_A 1ik3_A* 1hu9_A* 1jnq_A* 1lnh_A 1n8q_A* 1no3_A* 1rrh_A ... Length = 839 Back     alignment and structure
 Score =  654 bits (1688), Expect = 0.0
 Identities = 238/594 (40%), Positives = 331/594 (55%), Gaps = 22/594 (3%)

Query: 65  KSTQVKAFVTIKPSVGG---LVSGFVDDVKDMFGKSLLLELVSAELDPKTGAEKPTIKGF 121
              ++K  V + P            VD++    G+S+ L+L+SA      G  K     F
Sbjct: 4   AGHKIKGTVVLMPKNELEVNPDGSAVDNLNAFLGRSVSLQLISATKADAHGKGKVGKDTF 63

Query: 122 AHR----AGEDKDGHIIYESKFEVPPSFGEVGAILVENEHHKEMYLNDIVLDG-PRNGPV 176
                        G   +   FE   S G  GA  ++N    E +L  + L+     G +
Sbjct: 64  LEGINTSLPTLGAGESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGTI 123

Query: 177 NITCGSWVQSKHVNKQKRIFFTNKSYLPSQTPNGLTRLRAEELLNLRGDGQGERKTHDRI 236
              C SWV +  + K  RIFF N +Y+PS+TP  L   R EEL +LRG+G GERK +DRI
Sbjct: 124 RFVCNSWVYNTKLYKSVRIFFANHTYVPSETPAPLVSYREEELKSLRGNGTGERKEYDRI 183

Query: 237 YDYDVYNDLGVPDFCSELARPVLGG-KEHPYPRRCRTGRPPCETDPASESRTLINYVPRD 295
           YDYDVYNDLG PD   +LARPVLGG    PYPRR RTGR P  TDP +E +  + YVPRD
Sbjct: 184 YDYDVYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEVFYVPRD 243

Query: 296 EAFSEIKQLQFSAKTLYSVLHGLVPSLETAI--IDTDLGFPYFTTIDKLFNEGVNVPMPE 353
           E    +K          S+   + P+ E+A     T + F  F  +  L+  G+ +P   
Sbjct: 244 ENLGHLKSKDALEIGTKSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLP--- 300

Query: 354 TFKEKALWRTILPRLVKGIEDTGKEVLRFETPETMDRDKFFWFRDEEFGRQTLAGLNPYS 413
             ++       LP + +     G+ +L+F  P  +   +  W  DEEF R+ +AG+NP  
Sbjct: 301 --RDVISTIIPLPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCV 358

Query: 414 IRLVTEWPLRSTLDPEIYGPPESAITKELIEKEIGGIMTVEEAIKQKKLFILDYHDLLLP 473
           IR + E+P +S LDP IYG   S IT + ++ +     T++EA+  ++LF+LDYHD+ +P
Sbjct: 359 IRGLEEFPPKSNLDPAIYGDQSSKITADSLDLDG---YTMDEALGSRRLFMLDYHDIFMP 415

Query: 474 YVEKVRELKGTTLYGSRTLFFSYPSGTLRPLAIELTRPPMDG--KPQWKQVFTPSWHSTE 531
           YV ++ +L     Y +RT+ F    GTL+P+AIEL+ P   G       QV  P+    E
Sbjct: 416 YVRQINQLNSAKTYATRTILFLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKEGVE 475

Query: 532 CWLWRLAKAHVLAHDSGYHQLVSHWLRTHCCTEPYIIATNRQLSAMHPINRLLQPHFRYT 591
             +W LAKA+V+ +DS YHQL+SHWL TH   EP++IAT+R LS +HPI +LL PH+R  
Sbjct: 476 STIWLLAKAYVIVNDSCYHQLMSHWLNTHAAMEPFVIATHRHLSVLHPIYKLLTPHYRNN 535

Query: 592 MEINALAREALVNAGGIIESTFSPGKYSMELSSVAYDKHWRFDHEALPKDLISR 645
           M INALAR++L+NA GIIE+TF P KYS+E+SS  Y K+W F  +ALP DLI R
Sbjct: 536 MNINALARQSLINANGIIETTFLPSKYSVEMSSAVY-KNWVFTDQALPADLIKR 588
>2iuk_A SEED lipoxygenase; iron, dioxygenase, metal-binding, oxidoreductase, oxylipin biosynthesis, soybean lipoxygenase-D, fatty acid biosynthesis; 2.4A {Glycine max} Length = 864 Back     alignment and structure
>2iuj_A Lipoxygenase L-5; dioxygenase, metal-binding, oxidoreductase, soybean lipoxygenase-B, fatty acid biosynthesis, lipid synthesis; 2.4A {Glycine max} Length = 853 Back     alignment and structure
>3dy5_A Allene oxide synthase-lipoxygenase protein; fusion protein, BI-functional enzyme, dioxygenase, fatty ACI biosynthesis, heme, iron; HET: HEM; 3.51A {Plexaura homomalla} Length = 1066 Back     alignment and structure
>3rde_A Arachidonate 12-lipoxygenase, 12S-type; C-terminal domain, protein-inhibitor complex, oxapentadeca-4-YNE)phenylpropanoic acid; HET: OYP; 1.89A {Sus scrofa} Length = 573 Back     alignment and structure
>1lox_A 15-lipoxygenase, 15LOX; oxidoreductase, 15LO_depot2; HET: RS7; 2.40A {Oryctolagus cuniculus} SCOP: a.119.1.2 b.12.1.1 PDB: 2p0m_A* Length = 662 Back     alignment and structure
>3v98_A Arachidonate 5-lipoxygenase; dioxygenase, oxidoreductase; 2.07A {Homo sapiens} PDB: 3v99_A* 3o8y_A 3v92_B Length = 691 Back     alignment and structure
>3fg1_A Allene oxide synthase-lipoxygenase protein; arichidonic metabolism, dioxygenase, fatty ACI biosynthesis, heme, iron, lipid synthesis, lyase; HET: GOL; 1.85A {Plexaura homomalla} PDB: 3fg4_A* 3fg3_A* 2fnq_A Length = 696 Back     alignment and structure
>3d3l_A Arachidonate 12-lipoxygenase, 12S-type; ALOX12, iron-binding protein, 12-LOX, platelet-type lipoxygenase 12, structural genomics; 2.60A {Homo sapiens} Length = 541 Back     alignment and structure
>3vf1_A 11R-lipoxygenase; LOX, PLAT, beta sandwich, C2-like domain, non-heme iron, conformational change, dioxygenase, oxidoreductase; HET: SUC; 2.47A {Gersemia fruticosa} Length = 698 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query645
2iuk_A 864 SEED lipoxygenase; iron, dioxygenase, metal-bindin 100.0
1f8n_A 839 Lipoxygenase-1; dioxygenase, metalloprotein, fatty 100.0
2iuj_A 853 Lipoxygenase L-5; dioxygenase, metal-binding, oxid 100.0
1lox_A 662 15-lipoxygenase, 15LOX; oxidoreductase, 15LO_depot 100.0
3v98_A 691 Arachidonate 5-lipoxygenase; dioxygenase, oxidored 100.0
3fg1_A 696 Allene oxide synthase-lipoxygenase protein; arichi 100.0
3vf1_A 698 11R-lipoxygenase; LOX, PLAT, beta sandwich, C2-lik 100.0
3dy5_A 1066 Allene oxide synthase-lipoxygenase protein; fusion 100.0
3rde_A 573 Arachidonate 12-lipoxygenase, 12S-type; C-terminal 100.0
3d3l_A 541 Arachidonate 12-lipoxygenase, 12S-type; ALOX12, ir 100.0
1olp_A370 Alpha-toxin; zinc phospholipase C, GAS gangrene de 97.98
2wxu_A370 Phospholipase C; cytolysis, hydrolase, hemolysis, 97.97
3cwz_B384 RAB6IP1, RAB6-interacting protein 1; RAB small GTP 96.27
>2iuk_A SEED lipoxygenase; iron, dioxygenase, metal-binding, oxidoreductase, oxylipin biosynthesis, soybean lipoxygenase-D, fatty acid biosynthesis; 2.4A {Glycine max} Back     alignment and structure
Probab=100.00  E-value=7.4e-177  Score=1503.58  Aligned_cols=579  Identities=43%  Similarity=0.738  Sum_probs=537.7

Q ss_pred             ceeeeEEEeecc-eeeeEEEEeec------------cccCccccccchhhhccCCcEEEEEEeceeCCCCCCcc----ce
Q 006428           55 NIKAITTFTQKS-TQVKAFVTIKP------------SVGGLVSGFVDDVKDMFGKSLLLELVSAELDPKTGAEK----PT  117 (645)
Q Consensus        55 ~~~~~~~~~~~~-~~~~~~~~v~~------------~~~~~~~~~~d~~~~~~g~~v~lqLvS~~~~~~~~~~~----~~  117 (645)
                      +|||+|++|+++ ++++++.++++            +..+++.+++|+++|++|++|+|||||++++++||+||    ++
T Consensus        10 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~v~lqlvs~~~~~~~~~~k~~~~~~   89 (864)
T 2iuk_A           10 KIKGTVVLMPKNVLDFNAITSIGKGGVIDTATGILGQGVSLVGGVIDTATSFLGRNISMQLISATQTDGSGNGKVGKEVY   89 (864)
T ss_dssp             CEEEEEEEEEGGGSCHHHHTTC-----------------------CCSGGGSCSTTEEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             EEEEEEEEEecccccccccccccccccccccccccccccccccchhhhHHHhccCeEEEEEEecccCCCCCCCcCCCccc
Confidence            799999999997 77766553322            23344568899999999999999999999999999885    99


Q ss_pred             eccccccCCCCCCCcEEEEEEEecCCCCCceeEEEEEecCCCceeeeeEEEccCCC-CcEEEEeccceecCCCCCcceEE
Q 006428          118 IKGFAHRAGEDKDGHIIYESKFEVPPSFGEVGAILVENEHHKEMYLNDIVLDGPRN-GPVNITCGSWVQSKHVNKQKRIF  196 (645)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~G~pgai~v~n~~~~e~fl~~i~l~~~p~-g~i~F~cnsWV~~~~~~~~~rif  196 (645)
                      |++|+.+.....+++++|+++|+||++||+||||+|+|+|++||||++|+|+++|. |+|||+||||||+.++|+++|||
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~f~~~~~fg~pgA~~v~n~~~~e~~l~~~~l~~~~~~~~~~f~cnswv~~~~~~~~~Rif  169 (864)
T 2iuk_A           90 LEKHLPTLPTLGARQDAFSIFFEWDASFGIPGAFYIKNFMTDEFFLVSVKLEDIPNHGTIEFVCNSWVYNFRSYKKNRIF  169 (864)
T ss_dssp             CCEEECSCSSCCTTCEEEEEEECCCSTTCCEEEEEEEECSSSCEEEEEEEEECCSSSCCEEEEEEEEECBGGGSSSCEEE
T ss_pred             ccccccCCCcCCCCcEEEEEEEEeeccCCCcceEEEEeCCCCceEEEEEEEecCCCCCcEEEecCccccCCCCCCCCcee
Confidence            99999654446688999999999999999999999999999999999999999995 89999999999999999999999


Q ss_pred             eeCcccCCCCCChHhHHHHHHHHHhhcCCCCCCccccCeEEeccccCCCCCCCCCCccccccCCC-CCCCCccccCCCCC
Q 006428          197 FTNKSYLPSQTPNGLTRLRAEELLNLRGDGQGERKTHDRIYDYDVYNDLGVPDFCSELARPVLGG-KEHPYPRRCRTGRP  275 (645)
Q Consensus       197 f~nk~yLP~~tp~~L~~~R~~EL~~lRg~g~g~rk~~dRiYdyd~YnDlG~Pd~~~~l~RpvlGg-~~~PyPRR~rTgR~  275 (645)
                      |+||+|||++||++|++|||+||++|||||+||||+||||||||||||||+||++++  |||||| ++|||||||||||+
T Consensus       170 F~n~~ylp~~tp~~l~~~R~~el~~lrg~g~g~rk~~driydyd~yndlg~pd~~~~--rpvlggs~~~pyPrR~rtgr~  247 (864)
T 2iuk_A          170 FVNDTYLPSATPAPLLKYRKEEFEVLRGDGTGKRKDFDRIYDYDVYNDLGNPDGGDP--RPILGGCSIYPYPLRVRTGRE  247 (864)
T ss_dssp             EBSCCCCTTTSCGGGHHHHHHHHHHHHCCSCSCCCTTCCCCCEECBCCSCBGGGTBC--CCCBSSSSSSCCCCEECCCCC
T ss_pred             ccCCCcCcccCcHHHHHHHHHHHHHhcCCCCCcccccccchhhhhhhcCCCcccCCC--CcccCCCCCCCCCccccCCCC
Confidence            999999999999999999999999999999999999999999999999999999987  999999 89999999999999


Q ss_pred             CCCCCCCCCCccccCccCCCcccchhhhhchhhhHHHHHHhhhhhhhhhhhc--c-CCCCCCCHHHHHHHhcCCCCCCCC
Q 006428          276 PCETDPASESRTLINYVPRDEAFSEIKQLQFSAKTLYSVLHGLVPSLETAII--D-TDLGFPYFTTIDKLFNEGVNVPMP  352 (645)
Q Consensus       276 ~~~~dp~~e~r~~~~yvPrDe~Fs~~K~~~F~~~~l~~~~~~~~p~l~~~~~--~-~~~~f~sf~Di~~Ly~~g~~l~~~  352 (645)
                      |+++||.+|+|.. +||||||+|+++|++||.+++++++++.++|+|+++++  + +..+|+||+||++||++|+++|. 
T Consensus       248 ~~~~dp~~e~~~~-~yvPrDe~F~~~K~~~f~~~~~k~~~~~~~p~l~~~~~~~~~~~~~f~sf~di~~ly~~g~~l~~-  325 (864)
T 2iuk_A          248 RTRTDPNSEKPGE-VYVPRDENFGHLKSSDFLTYGIKSLSHDVIPLFKSAIFQLRVTSSEFESFEDVRSLYEGGIKLPT-  325 (864)
T ss_dssp             BCSSCTTSBCCCC-CCCCGGGSCCCSSGGGCHHHHHHHHHHTTHHHHHHHHHSSCSSCSSCCSHHHHHTTTSSCEECCH-
T ss_pred             CCCCCCCcccccc-CCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHhcccccCcCCCCCHHHHHHHHhccccCch-
Confidence            9999999999975 99999999999999999999999999999999999985  2 57899999999999999999983 


Q ss_pred             chhhHHHHHhhh--hhhhhccccccCcceecccCccccccCcccccccHHHHHhhhcCCCccccccccCCCCCCCCCCcc
Q 006428          353 ETFKEKALWRTI--LPRLVKGIEDTGKEVLRFETPETMDRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEI  430 (645)
Q Consensus       353 ~~~~~~~~~~~~--~~~i~e~~~~~~~~~l~~p~P~~i~~d~~~W~~DeeFarQ~LaG~NP~~I~r~~e~P~~s~Ldp~~  430 (645)
                            +..++.  ++.++++++++++++++||+|++|++|+++|++|+|||||+|||+||++|++|++||++|+|||++
T Consensus       326 ------~~~~~~~p~~~~~~~~~~~~e~~lk~p~P~vi~~~~~~W~~DeeFarQ~LaG~NP~~I~r~~e~P~~s~ldp~~  399 (864)
T 2iuk_A          326 ------DILSQISPLPALKEIFRTDGENVLQFPPPHVAKVSKSGVMTDEEFAREVIAGVNPNVIRRLQEFPPKSTLDPTL  399 (864)
T ss_dssp             ------HHHHHHSSCTTTTTTCBCTTSSEEBCCCCSSCSCSSSSSSCHHHHHHHHHHSSSCSCCEECSSSSCCCCSCHHH
T ss_pred             ------hhhcccCcHHHHHHHhhccccchhcCCCcceecccchhhhchHHHHHHHhcCCCchhhhhhhccCCcccCChhh
Confidence                  233343  456778878889999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcccHHHHHHhhCCcccHHHHHhcCcEEEecccccccchhhhcccCCCceeeeeeeeEeeCCCCceeeEEEEecC
Q 006428          431 YGPPESAITKELIEKEIGGIMTVEEAIKQKKLFILDYHDLLLPYVEKVRELKGTTLYGSRTLFFSYPSGTLRPLAIELTR  510 (645)
Q Consensus       431 yg~~~s~it~e~i~~~L~g~~tl~eal~~grLFi~Dy~d~~lp~l~~in~~~g~~~YAp~~Lffl~~dG~L~PIAIqL~~  510 (645)
                      ||+++|+||++||+..|+| +||+|||++|||||+||||++|||+.++|.++++++|||+||||++++|+|+||||||++
T Consensus       400 yg~~~s~it~e~i~~~l~g-~tl~eal~~grLFi~Dy~d~~lp~l~~in~~~~~~~YAp~~Lffl~~dG~L~PlAIqLs~  478 (864)
T 2iuk_A          400 YGDQTSTITKEQLEINMGG-VTVEEALSTQRLFILDYQDAFIPYLTRINSLPTAKAYATRTILFLKDDGTLKPLAIELSK  478 (864)
T ss_dssp             HCCCCCCCCHHHHGGGTTT-CCHHHHHHTTCEEEEECHHHHGGGHHHHHTSTTCCCCEEEEEEEECTTSCEEEEEEEEEE
T ss_pred             cCCcccccCHHHHhhccCC-CcHHHHHhcCCEEEecchhhhccchhhcccCCCceeecceEEEEEcCCCCEeEEEEEeeC
Confidence            9999999999999999998 999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCC--CCCceeeeCCCCCCCchhHHHHHHHHhhhhhhhHHHHHHHhhhccchhhHHHHhhcccCccCchhhhccccc
Q 006428          511 PPMDGK--PQWKQVFTPSWHSTECWLWRLAKAHVLAHDSGYHQLVSHWLRTHCCTEPYIIATNRQLSAMHPINRLLQPHF  588 (645)
Q Consensus       511 ~~~~~~--~~~~~VfTP~d~~~~~~~W~LAK~~v~~aD~~~HqlisHllrTHlv~EpfiIAt~RqLs~~HPI~kLL~PHf  588 (645)
                      ++++++  +++++||||+|+++++|.|+|||+||++||+++||+|+||++||++||||+|||+||||++|||||||.|||
T Consensus       479 p~~~~~~~~~~~~VftP~dd~~~~~~W~LAK~~v~~aD~~~HqlisHll~THlv~Epf~IAt~RqLs~~HPI~kLL~PHf  558 (864)
T 2iuk_A          479 PHPDGDNLGPESIVVLPATEGVDSTIWLLAKAHVIVNDSGYHQLVSHWLNTHAVMEPFAIATNRHLSVLHPIYKLLYPHY  558 (864)
T ss_dssp             CCSSSSSSCCEEEEECCCSSSSHHHHHHHHHHHHHHHHHHHHHHCCCCCTTHHHHHHHHHHHHHHSCTTCHHHHHHGGGG
T ss_pred             CCCCccccCCCCCeECCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhccCCccCchHHhhHHHH
Confidence            876554  367899999987777899999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccchHHHHhhcccCCceecccccCchhHHHHHHHHHccCccCCCCCchhhhhcC
Q 006428          589 RYTMEINALAREALVNAGGIIESTFSPGKYSMELSSVAYDKHWRFDHEALPKDLISR  645 (645)
Q Consensus       589 r~Tl~IN~lAR~~LI~~gGiie~~f~~G~~~~elss~~Yk~~w~F~~~~LP~DL~~R  645 (645)
                      |+||+||++||+.|||++|++|++|++|+|+|||++++|++ |+|++++||+||++|
T Consensus       559 r~Tl~IN~~AR~~LI~~gGiie~~~~~G~~~~elss~ayk~-w~f~~~~LP~DL~~R  614 (864)
T 2iuk_A          559 RDTININGLARQSLINADGIIEKSFLPGKYSIEMSSSVYKN-WVFTHQALPADLVKR  614 (864)
T ss_dssp             TTHHHHHHHHHHHTSSTTSHHHHHSTTGGGHHHHHHHHHTT-CCGGGSSHHHHHHHT
T ss_pred             HHHHHHHHHHHHhccCCCCceeeeccCchhHHHHHHHHHcc-CCCccccCcHHHHhc
Confidence            99999999999999999999999999999999999999997 999999999999998
>1f8n_A Lipoxygenase-1; dioxygenase, metalloprotein, fatty acids, oxidoreductase; 1.40A {Glycine max} SCOP: a.119.1.1 b.12.1.1 PDB: 1yge_A 2sbl_B 3pzw_A 1fgq_A 1fgr_A 3bnd_A 1fgt_A 1fgm_A 3bnb_A 1fgo_A 1y4k_A 3bne_A 3bnc_A 1ik3_A* 1hu9_A* 1jnq_A* 1lnh_A 1n8q_A* 1no3_A* 1rrh_A ... Back     alignment and structure
>2iuj_A Lipoxygenase L-5; dioxygenase, metal-binding, oxidoreductase, soybean lipoxygenase-B, fatty acid biosynthesis, lipid synthesis; 2.4A {Glycine max} Back     alignment and structure
>1lox_A 15-lipoxygenase, 15LOX; oxidoreductase, 15LO_depot2; HET: RS7; 2.40A {Oryctolagus cuniculus} SCOP: a.119.1.2 b.12.1.1 PDB: 2p0m_A* Back     alignment and structure
>3v98_A Arachidonate 5-lipoxygenase; dioxygenase, oxidoreductase; 2.07A {Homo sapiens} PDB: 3v99_A* 3o8y_A 3v92_B Back     alignment and structure
>3fg1_A Allene oxide synthase-lipoxygenase protein; arichidonic metabolism, dioxygenase, fatty ACI biosynthesis, heme, iron, lipid synthesis, lyase; HET: GOL; 1.85A {Plexaura homomalla} PDB: 3fg4_A* 3fg3_A* 2fnq_A Back     alignment and structure
>3vf1_A 11R-lipoxygenase; LOX, PLAT, beta sandwich, C2-like domain, non-heme iron, conformational change, dioxygenase, oxidoreductase; HET: SUC; 2.47A {Gersemia fruticosa} Back     alignment and structure
>3dy5_A Allene oxide synthase-lipoxygenase protein; fusion protein, BI-functional enzyme, dioxygenase, fatty ACI biosynthesis, heme, iron; HET: HEM; 3.51A {Plexaura homomalla} Back     alignment and structure
>3rde_A Arachidonate 12-lipoxygenase, 12S-type; C-terminal domain, protein-inhibitor complex, oxapentadeca-4-YNE)phenylpropanoic acid; HET: OYP; 1.89A {Sus scrofa} Back     alignment and structure
>3d3l_A Arachidonate 12-lipoxygenase, 12S-type; ALOX12, iron-binding protein, 12-LOX, platelet-type lipoxygenase 12, structural genomics; 2.60A {Homo sapiens} Back     alignment and structure
>1olp_A Alpha-toxin; zinc phospholipase C, GAS gangrene determinant, membrane binding, calcium binding, hydrolase; 2.5A {Clostridium absonum} SCOP: a.124.1.1 b.12.1.3 Back     alignment and structure
>2wxu_A Phospholipase C; cytolysis, hydrolase, hemolysis, membrane binding, virulence gangrene determinant, C2 domain; 1.80A {Clostridium perfringens} PDB: 2wy6_A 2wxt_A 1qm6_A 1qmd_A 1ca1_A 1gyg_A 1kho_A Back     alignment and structure
>3cwz_B RAB6IP1, RAB6-interacting protein 1; RAB small GTPase, RAB-binding domain, guanosine 5' triphosphate, RUN, RPIP8, UNC-14, nesca PLAT; HET: GTP; 3.20A {Mus musculus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 645
d3bnea1 690 a.119.1.1 (A:150-839) Lipoxigenase, C-terminal dom 0.0
d2p0ma1 551 a.119.1.2 (A:113-663) 15-Lipoxygenase {Rabbit (Ory 5e-93
d3bnea2143 b.12.1.1 (A:7-149) Plant lipoxigenase {Soybean (Gl 1e-41
>d3bnea1 a.119.1.1 (A:150-839) Lipoxigenase, C-terminal domain {Soybean (Glycine max), isozyme L1 [TaxId: 3847]} Length = 690 Back     information, alignment and structure

class: All alpha proteins
fold: Lipoxigenase
superfamily: Lipoxigenase
family: Plant lipoxigenases
domain: Lipoxigenase, C-terminal domain
species: Soybean (Glycine max), isozyme L1 [TaxId: 3847]

 Score =  603 bits (1555), Expect = 0.0
 Identities = 200/448 (44%), Positives = 272/448 (60%), Gaps = 14/448 (3%)

Query: 203 LPSQTPNGLTRLRAEELLNLRGDGQGERKTHDRIYDYDVYNDLGVPDFCSELARPVLGG- 261
           +PS+TP  L   R EEL +LRG+G GERK +DRIYDYDVYNDLG PD   +LARPVLGG 
Sbjct: 1   VPSETPAPLVEYREEELKSLRGNGTGERKEYDRIYDYDVYNDLGNPDKSEKLARPVLGGS 60

Query: 262 KEHPYPRRCRTGRPPCETDPASESRTLINYVPRDEAFSEIKQLQFSAKTLYSVLHGLVPS 321
              PYPRR RTGR P  TDP +E +  + YVPRDE    +K          S+   + P+
Sbjct: 61  STFPYPRRGRTGRGPTVTDPNTEKQGEVFYVPRDENLGHLKSKDALEIGTKSLSQIVQPA 120

Query: 322 LETAII--DTDLGFPYFTTIDKLFNEGVNVPMPETFKEKALWRTILPRLVKGIEDTGKEV 379
            E+A     T + F  F  +  L+  G+ +P         L     P + +     G+ +
Sbjct: 121 FESAFDLKSTPIEFHSFQDVHDLYEGGIKLPRDVISTIIPL-----PVIKELYRTDGQHI 175

Query: 380 LRFETPETMDRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIYGPPESAIT 439
           L+F  P  +   +  W  DEEF R+ +AG+NP  IR + E+P +S LDP IYG   S IT
Sbjct: 176 LKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEEFPPKSNLDPAIYGDQSSKIT 235

Query: 440 KELIEKEIGGIMTVEEAIKQKKLFILDYHDLLLPYVEKVRELKGTTLYGSRTLFFSYPSG 499
            + ++ +     T++EA+  ++LF+LDYHD+ +PYV ++ +L     Y +RT+ F    G
Sbjct: 236 ADSLDLDG---YTMDEALGSRRLFMLDYHDIFMPYVRQINQLNSAKTYATRTILFLREDG 292

Query: 500 TLRPLAIELTRPPMDG--KPQWKQVFTPSWHSTECWLWRLAKAHVLAHDSGYHQLVSHWL 557
           TL+P+AIEL+ P   G       QV  P+    E  +W LAKA+V+ +DS YHQL+SHWL
Sbjct: 293 TLKPVAIELSLPHSAGDLSAAVSQVVLPAKEGVESTIWLLAKAYVIVNDSCYHQLMSHWL 352

Query: 558 RTHCCTEPYIIATNRQLSAMHPINRLLQPHFRYTMEINALAREALVNAGGIIESTFSPGK 617
            TH   EP++IAT+R LS +HPI +LL PH+R  M INALAR++L+NA GI E+TF P K
Sbjct: 353 NTHAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINALARQSLINANGIAETTFLPSK 412

Query: 618 YSMELSSVAYDKHWRFDHEALPKDLISR 645
           YS+E+SS  Y K+W F  +ALP DLI R
Sbjct: 413 YSVEMSSAVY-KNWVFTDQALPADLIKR 439
>d2p0ma1 a.119.1.2 (A:113-663) 15-Lipoxygenase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 551 Back     information, alignment and structure
>d3bnea2 b.12.1.1 (A:7-149) Plant lipoxigenase {Soybean (Glycine max), isozyme L1 [TaxId: 3847]} Length = 143 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query645
d3bnea1 690 Lipoxigenase, C-terminal domain {Soybean (Glycine 100.0
d2p0ma1 551 15-Lipoxygenase {Rabbit (Oryctolagus cuniculus) [T 100.0
d3bnea2143 Plant lipoxigenase {Soybean (Glycine max), isozyme 100.0
d2p0ma2111 15-Lipoxygenase {Rabbit (Oryctolagus cuniculus) [T 97.7
d1olpa2121 Alpha-toxin, C-terminal domain {Clostridium absonu 97.29
d1ca1a2121 Alpha-toxin, C-terminal domain {Clostridium perfri 96.56
d1bu8a1114 Pancreatic lipase, C-terminal domain {Rat (Rattus 91.8
d1rp1a1113 Pancreatic lipase, C-terminal domain {Dog (Canis f 91.75
>d3bnea1 a.119.1.1 (A:150-839) Lipoxigenase, C-terminal domain {Soybean (Glycine max), isozyme L1 [TaxId: 3847]} Back     information, alignment and structure
class: All alpha proteins
fold: Lipoxigenase
superfamily: Lipoxigenase
family: Plant lipoxigenases
domain: Lipoxigenase, C-terminal domain
species: Soybean (Glycine max), isozyme L1 [TaxId: 3847]

Probab=100.00  E-value=5.9e-140  Score=1183.03  Aligned_cols=433  Identities=46%  Similarity=0.827  Sum_probs=414.2

Q ss_pred             CCCCCChHhHHHHHHHHHhhcCCCCCCccccCeEEeccccCCCCCCCCCCccccccCCC-CCCCCccccCCCCCCCCCCC
Q 006428          203 LPSQTPNGLTRLRAEELLNLRGDGQGERKTHDRIYDYDVYNDLGVPDFCSELARPVLGG-KEHPYPRRCRTGRPPCETDP  281 (645)
Q Consensus       203 LP~~tp~~L~~~R~~EL~~lRg~g~g~rk~~dRiYdyd~YnDlG~Pd~~~~l~RpvlGg-~~~PyPRR~rTgR~~~~~dp  281 (645)
                      ||++||++|++|||+||++|||||+||||+||||||||||||||+||++++++|||||| ++|||||||||||+||++||
T Consensus         1 lp~~tp~~l~~~r~~el~~lrg~g~g~~~~~driydy~~yndlg~pd~~~~~~rp~lgg~~~~pyprr~rtgr~~~~~dp   80 (690)
T d3bnea1           1 VPSETPAPLVEYREEELKSLRGNGTGERKEYDRIYDYDVYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDP   80 (690)
T ss_dssp             CGGGSCGGGHHHHHHHHHHHHCCSCSCCCTTCCCCCEECBCSSCCTTTCGGGCCCCBSSSSSSCCCCEECCCCCBCSSCT
T ss_pred             CCccccHHHHHHHHHHHHHhCCCCCCCCCcccccccccccccCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence            89999999999999999999999999999999999999999999999999999999999 68999999999999999999


Q ss_pred             CCCCccccCccCCCcccchhhhhchhhhHHHHHHhhhhhhhhhhhc--cCCCCCCCHHHHHHHhcCCCCCCCCchhhHHH
Q 006428          282 ASESRTLINYVPRDEAFSEIKQLQFSAKTLYSVLHGLVPSLETAII--DTDLGFPYFTTIDKLFNEGVNVPMPETFKEKA  359 (645)
Q Consensus       282 ~~e~r~~~~yvPrDe~Fs~~K~~~F~~~~l~~~~~~~~p~l~~~~~--~~~~~f~sf~Di~~Ly~~g~~l~~~~~~~~~~  359 (645)
                      .+|+|...+||||||+|+++|++||+++++|+++|.++|.|+++++  .+..+|+||+||++||++|+++|.      +.
T Consensus        81 ~~e~r~~~~yvPrde~f~~~k~~~f~~~~~~~~~~~~~p~~~~~~~~~~~~~~f~~f~~i~~ly~~g~~~~~------~~  154 (690)
T d3bnea1          81 NTEKQGEVFYVPRDENLGHLKSKDALEIGTKSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLPR------DV  154 (690)
T ss_dssp             TSBCCCSSCCCCGGGSCCCSSGGGCHHHHHHHHHHTHHHHHHHHHHTTSSCSSCCSHHHHHGGGTTCEECCH------HH
T ss_pred             CcccCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHhccccCch------hh
Confidence            9999999999999999999999999999999999999999999875  456899999999999999999984      13


Q ss_pred             HHhhh-hhhhhccccccCcceecccCccccccCcccccccHHHHHhhhcCCCccccccccCCCCCCCCCCccCCCCCCcc
Q 006428          360 LWRTI-LPRLVKGIEDTGKEVLRFETPETMDRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIYGPPESAI  438 (645)
Q Consensus       360 ~~~~~-~~~i~e~~~~~~~~~l~~p~P~~i~~d~~~W~~DeeFarQ~LaG~NP~~I~r~~e~P~~s~Ldp~~yg~~~s~i  438 (645)
                      +.+.+ ++.+++.++++++.+||||+|++|++|+++|++|+|||||+|||+||++|+||++||++++||+++||+++++|
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~f~~P~~~~~~~~~W~~D~eFarQ~LaG~NP~~Irr~~e~P~~~~l~~~~~g~~~s~i  234 (690)
T d3bnea1         155 ISTIIPLPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEEFPPKSNLDPAIYGDQSSKI  234 (690)
T ss_dssp             HHHHTTSTTGGGGCEECSSSEEECCCCGGGSSCSSGGGSHHHHHHHHHHSSSTTCCEECCSSSCCCCSCHHHHCCCCCCC
T ss_pred             hhhcccHHHHHHHhhccccceeecCCchhhhccccccccHHHHHHHHhcCCCchheeeccccCCcCCCCHHHhCchhhhh
Confidence            34433 67899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHhhCCcccHHHHHhcCcEEEecccccccchhhhcccCCCceeeeeeeeEeeCCCCceeeEEEEecCCCCCCC--
Q 006428          439 TKELIEKEIGGIMTVEEAIKQKKLFILDYHDLLLPYVEKVRELKGTTLYGSRTLFFSYPSGTLRPLAIELTRPPMDGK--  516 (645)
Q Consensus       439 t~e~i~~~L~g~~tl~eal~~grLFi~Dy~d~~lp~l~~in~~~g~~~YAp~~Lffl~~dG~L~PIAIqL~~~~~~~~--  516 (645)
                      |+++++  ++| +||++||++|||||+||||+++|++.++|..++++.|||+||||++++|+|+||||||++++..++  
T Consensus       235 t~~~i~--l~G-~Tl~~Al~~grLFi~Dy~dl~~~~~~~i~~~~~~~~~A~~~Lffl~~dG~L~PiAIqL~~~~~~~~~~  311 (690)
T d3bnea1         235 TADSLD--LDG-YTMDEALGSRRLFMLDYHDIFMPYVRQINQLNSAKTYATRTILFLREDGTLKPVAIELSLPHSAGDLS  311 (690)
T ss_dssp             CGGGCC--CTT-CCHHHHHHTTCEEEEECHHHHHHHHHHHHTSTTCCCCEEEEEEEECTTSCEEEEEEEEECCCCTTCCC
T ss_pred             hHhhhc--cCc-cHHHHHHHcCCEEEEechhhhccccccccCcCCceeecchhheeECCCCCcccEEEEecCCCCCcccC
Confidence            999884  777 999999999999999999999999999999999999999999999999999999999999886543  


Q ss_pred             CCCceeeeCCCCCCCchhHHHHHHHHhhhhhhhHHHHHHHhhhccchhhHHHHhhcccCccCchhhhccccccccccchH
Q 006428          517 PQWKQVFTPSWHSTECWLWRLAKAHVLAHDSGYHQLVSHWLRTHCCTEPYIIATNRQLSAMHPINRLLQPHFRYTMEINA  596 (645)
Q Consensus       517 ~~~~~VfTP~d~~~~~~~W~LAK~~v~~aD~~~HqlisHllrTHlv~EpfiIAt~RqLs~~HPI~kLL~PHfr~Tl~IN~  596 (645)
                      +++++||||+|+++++|.|+||||||++||+++||+|+||++||++||||||||+||||.+|||||||.||||+||+||+
T Consensus       312 ~~~~~VftP~d~~~~~~~W~lAK~~v~~aD~~~HqlvsHll~THlv~Epf~IAt~RqLs~~HPI~kLL~PHfr~Tl~IN~  391 (690)
T d3bnea1         312 AAVSQVVLPAKEGVESTIWLLAKAYVIVNDSCYHQLMSHWLNTHAAMEPFVIATHRHLSVLHPIYKLLTPHYRNNMNINA  391 (690)
T ss_dssp             CCCCEEECCCSSHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTHHHHHHHHHHHHHHSCTTCHHHHHHGGGGTTHHHHHH
T ss_pred             CCCCceeCCCCCCccchHHHHHHHHHHHhhHHHHHHHHhhhhhhhHHHHHHHHHHhcCCccCCHHHhcchhhhhhHHHHH
Confidence            66899999999776789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcccCCceecccccCchhHHHHHHHHHccCccCCCCCchhhhhcC
Q 006428          597 LAREALVNAGGIIESTFSPGKYSMELSSVAYDKHWRFDHEALPKDLISR  645 (645)
Q Consensus       597 lAR~~LI~~gGiie~~f~~G~~~~elss~~Yk~~w~F~~~~LP~DL~~R  645 (645)
                      +||++|||+||++|++|++|+|+|||++++|++ |+|++++||+||++|
T Consensus       392 ~AR~~LI~~gGiie~~~~~~~~~~el~~~ayk~-w~f~~~~lP~dL~~R  439 (690)
T d3bnea1         392 LARQSLINANGIAETTFLPSKYSVEMSSAVYKN-WVFTDQALPADLIKR  439 (690)
T ss_dssp             HHHHHTSSTTSHHHHHSTTGGGHHHHHHHHHTT-CCGGGGSHHHHHHHT
T ss_pred             HHHHhccCCCCeeeecccCchhHHHHHHHHHhc-CcccccCCHHHHHHc
Confidence            999999999999999999999999999999998 999999999999998
>d2p0ma1 a.119.1.2 (A:113-663) 15-Lipoxygenase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d3bnea2 b.12.1.1 (A:7-149) Plant lipoxigenase {Soybean (Glycine max), isozyme L1 [TaxId: 3847]} Back     information, alignment and structure
>d2p0ma2 b.12.1.1 (A:2-112) 15-Lipoxygenase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d1olpa2 b.12.1.3 (A:250-370) Alpha-toxin, C-terminal domain {Clostridium absonum [TaxId: 29369]} Back     information, alignment and structure
>d1ca1a2 b.12.1.3 (A:250-370) Alpha-toxin, C-terminal domain {Clostridium perfringens, different strains [TaxId: 1502]} Back     information, alignment and structure
>d1bu8a1 b.12.1.2 (A:337-449) Pancreatic lipase, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1rp1a1 b.12.1.2 (A:337-449) Pancreatic lipase, C-terminal domain {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure