Citrus Sinensis ID: 006468

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640----
MAVGLDTGVPWVMCKEDDAPDPVINSCNGFYCDAFSPNKPYKPTLWTEAWSGWFTEFGGAVHRRPVQDLAFAVARFIQKGGSFFNYYMYHGGTNFGRTAGGPFITTSYDYDAPLDEYGLMRQPKYGHLKQLHEAIKLCEYALVSSDPTVTSLGTYQQAHVFSAGQQKCAAFLSNYNTKSAARVTFNGRQYNLPPWSISILPDCKNVVFNTAKVAVQHTKMQMLPTGSKLLSWETYDEDISSLGESSTLTAIGLLEQINITRDTSDYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGLPNVGLHYETWETGVRGAVVLHGLDHGNKDLTWQKWSYQVGLKGEAMNLVSPSEATSVDWTRGSLAAQGQQSLKWYKAYFDAPTGNEPLALDLRSMGKGQVWINGQSIGRYWMAYAKGDCKTCSYAGTFRPINCQRRCGHPTQRWYHVPRSWLKPTKNLLVVFEELGGDASRISLVKRSVARVCADAHEHHPTTDNNDIENKGNSNSTGNAKVLLQCAPGQSITSIEFASFGTPSGTCGSFQKGTCHAPNSHAMLEKECIGQESCSIFISSGVFGTDPCPNVLKRLSVQAVCSTADANTQS
cccccccccccEEEccccccccccccccccccccccccccccccEEEEEccccccccccccccccHHHHHHHHHHHHHHcccEEEEEEEEcccccccccccccEEcccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccEEEEEEEcccccEEEEEccccccccEEEEEccEEEEEccccccccccccEEEEcccEEEEEEEEEEEEccccccccEEEEEEccccccccccEEEcccEEEEEEcccccccEEEEEEEEEcccccccccccccEEEEcccccEEEEEEccEEEEEEEccccccEEEEEccEEEcccccEEEEEEEEccccccccccccccccEEEcEEEEcccccccccccccEEEEEcccccccccccccccccccccccccccccccccEEEEEEEccccccccEEEEccccccEEEEEccEEEEEEEEccccccccccccEEEEcccccccccccccEEEEEcccccccccccEEEEEEEEccccEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccccccccccccccEEccHHHHHHHHHcccccccEEEEcccccccccccccccEEEEEEEEEcccccccc
ccccccccccEEEEEcccccccEEEcccccEcccccccccccccEcccccHHHHHHcccccccccHHHHHHHHHHHHHccccEEEEEEEcccccccccccccEEEEccccccccHHccccccccccHHHHHHHHHHHHHHHHHcccccEEEccccEEEEEEEcccccEEEEEEEccccccEEEEEcccEEEccccEEEEccccccEEEEEEEEEccccEEEEEccccccccEEEEcccccccccccccccccHHHHHccccccccEEEEEEEEEEccccccccccccEEEEEEccccEEEEEEcccEEEEEEccccccEEEEEccEEEcccccEEEEEEEEcccccccccHHcccccccccEEEEEcccccEEccccccEEEEEcccccccEEccccccEEEEEcccccccccccEEEEEEEEccccccccEEEEcccccccEEEEEcccccccccccccccccccccccccccHHccccccccccEEEEccHHHccccccEEEEEEEcccccccEEEEEEEEcEEEEEEccccccccccccccccccccccccEEEEEcccccEEEEEEEEEccccccccccccccccccHHHHHHHHHHHcccccEEEEEccHHccccccccccEEEEEEEEEccccccccc
mavgldtgvpwvmckeddapdpvinscngfycdafspnkpykptlwteaWSGWFTefggavhrrpVQDLAFAVARFIQKGGSFFNYYmyhggtnfgrtaggpfittsydydapldeyglmrqpkyghLKQLHEAIKLCEYAlvssdptvtslgtyqqahvfSAGQQKCAAFLSNYNTKSAARVTFngrqynlppwsisilpdcknvvFNTAKVAVQHTKmqmlptgskllswetydedisslgesstlTAIGLLEQINITRDTSDYLWYMTSVEisssesflrggqkptltvesaGHAVHVFINgqflgsafgtrenrrftfsgpanlRAGINKIALLSIAVglpnvglhyetwetgVRGAVVLHGldhgnkdltwqkWSYQvglkgeamnlvspseatsvdwtrgslaaqGQQSLKWYKAyfdaptgneplaldlrsmgkgqvwiNGQSIGRYWMAYAkgdcktcsyagtfrpincqrrcghptqrwyhvprswlkptkNLLVVFEELggdasrisLVKRSVARVCAdahehhpttdnndienkgnsnstgNAKVLLqcapgqsitsiefasfgtpsgtcgsfqkgtchapnshaMLEKecigqescsifissgvfgtdpcpnvlkrLSVQAVCStadantqs
mavgldtgvpwvMCKEDDAPDPVINSCNGFYCDAFSPNKPYKPTLWTEAWSGWFTEFGGAVHRRPVQDLAFAVARFIQKGGSFFNYYMYHGGTNFGRTAGGPFITTSYDYDAPLDEYGLMRQPKYGHLKQLHEAIKLCEYALVSSDPTVTSLGTYQQAHVFSAGQQKCAAFLSNYNTKSAARVTFNGRQYNLPPWSISILPDCKNVVFNTAKVAVQHTKMQMLPTGSKLLSWETYDEDISSLGESSTLTAIGLLEQINITRDTSDYLWYMTSVEIsssesflrgGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGLPNVGLHYETWETGVRGAVVLHGLDHGNKDLTWQKWSYQVGLKGEAMNLVSPSEATSVDWTRGSLAAQGQQSLKWYKAYFDAPTGNEPLALDLRSMGKGQVWINGQSIGRYWMAYAKGDCKTCSYAGTFRPINCQRRCGHPTQRwyhvprswlkPTKNLLVVFEELGGDASRISLVKRSVARVCADAhehhpttdnndienkgNSNSTGNAKVLLQCAPGQSITSIEFASFGTPSGTCGSFQKGTCHAPNSHAMLEKECIGQESCSIFISSGVFGTDPCPNVLKRLSVQAVCSTADANTQS
MAVGLDTGVPWVMCKEDDAPDPVINSCNGFYCDAFSPNKPYKPTLWTEAWSGWFTEFGGAVHRRPVQDLAFAVARFIQKGGSFFNYYMYHGGTNFGRTAGGPFITTSYDYDAPLDEYGLMRQPKYGHLKQLHEAIKLCEYALVSSDPTVTSLGTYQQAHVFSAGQQKCAAFLSNYNTKSAARVTFNGRQYNLPPWSISILPDCKNVVFNTAKVAVQHTKMQMLPTGSKLLSWETYDEDISSLGESSTLTAIGLLEQINITRDTSDYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGLPNVGLHYETWETGVRGAVVLHGLDHGNKDLTWQKWSYQVGLKGEAMNLVSPSEATSVDWTRGSLAAQGQQSLKWYKAYFDAPTGNEPLALDLRSMGKGQVWINGQSIGRYWMAYAKGDCKTCSYAGTFRPINCQRRCGHPTQRWYHVPRSWLKPTKNLLVVFEELGGDASRISLVKRSVARVCADAHEHHPTTDNNDIENKGNSNSTGNAKVLLQCAPGQSITSIEFASFGTPSGTCGSFQKGTCHAPNSHAMLEKECIGQESCSIFISSGVFGTDPCPNVLKRLSVQAVCSTADANTQS
****LDTGVPWVMCKEDDAPDPVINSCNGFYCDAFSPNKPYKPTLWTEAWSGWFTEFGGAVHRRPVQDLAFAVARFIQKGGSFFNYYMYHGGTNFGRTAGGPFITTSYDYDAPLDEYGLMRQPKYGHLKQLHEAIKLCEYALVSSDPTVTSLGTYQQAHVFSAGQQKCAAFLSNYNTKSAARVTFNGRQYNLPPWSISILPDCKNVVFNTAKVAVQHTKMQMLPTGSKLLSWETYDEDISSLGESSTLTAIGLLEQINITRDTSDYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGLPNVGLHYETWETGVRGAVVLHGLDHGNKDLTWQKWSYQVGLKGEAMNLVSP*EATSVDWTRGSLAAQGQQSLKWYKAYFDAPTGNEPLALDLRSMGKGQVWINGQSIGRYWMAYAKGDCKTCSYAGTFRPINCQRRCGHPTQRWYHVPRSWLKPTKNLLVVFEELGGDASRISLVKRSVARVCAD**************************VLLQCAPGQSITSIEFASFGTPSGTCGSFQKGTCHAPNSHAMLEKECIGQESCSIFISSGVFGTDPCPNVLKRLSVQAVC*********
***GLDTGVPWVMCKEDDAPDPVINSCNGFYCDAFSPNKPYKPTLWTEAWSGWFTEFGGAVHRRPVQDLAFAVARFIQKGGSFFNYYMYHGGTNFGRTAGGPFITTSYDYDAPLDEYGLMRQPKYGHLKQLHEAIKLCEYALVSSDPTVTSLGTYQQAHVFSAGQQKCAAFLSNYNTKSAARVTFNGRQYNLPPWSISILPDCKNVVFNTAKVAVQHTKMQMLPTGSKLLSWETYDEDISSLGESSTLTAIGLLEQINITRDTSDYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGLPNVGLHYETWETGVRGAVVLHGLDHGNKDLTWQKWSYQVGLKGEAMNLVSP**************AQGQQSLKWYKAYFDAPTGNEPLALDLRSMGKGQVWINGQSIGRYWMAYAKGDCKTCSYAGTFRPINCQRRCGHPTQRWYHVPRSWLKPTKNLLVVFEELGGDASRISLVKRSVARVCADAHEHHPTTDNNDIENKG***************PGQSITSIEFASFGTPSGTCGSFQKGTCHAPNSHAMLEKECIGQESCSIFISSGVFGTDPCPNVLKRLSVQA***********
MAVGLDTGVPWVMCKEDDAPDPVINSCNGFYCDAFSPNKPYKPTLWTEAWSGWFTEFGGAVHRRPVQDLAFAVARFIQKGGSFFNYYMYHGGTNFGRTAGGPFITTSYDYDAPLDEYGLMRQPKYGHLKQLHEAIKLCEYALVSSDPTVTSLGTYQQAHVFSAGQQKCAAFLSNYNTKSAARVTFNGRQYNLPPWSISILPDCKNVVFNTAKVAVQHTKMQMLPTGSKLLSWETYDEDISSLGESSTLTAIGLLEQINITRDTSDYLWYMTSVEISS*********KPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGLPNVGLHYETWETGVRGAVVLHGLDHGNKDLTWQKWSYQVGLKGEAMNLVSPSEATSVDWTRGSLAAQGQQSLKWYKAYFDAPTGNEPLALDLRSMGKGQVWINGQSIGRYWMAYAKGDCKTCSYAGTFRPINCQRRCGHPTQRWYHVPRSWLKPTKNLLVVFEELGGDASRISLVKRSVARVCADAHEHHPTTDNNDIENKGNSNSTGNAKVLLQCAPGQSITSIEFASFGTPSGTCGSFQKGTCHAPNSHAMLEKECIGQESCSIFISSGVFGTDPCPNVLKRLSVQAV**********
****LDTGVPWVMCKEDDAPDPVINSCNGFYCDAFSPNKPYKPTLWTEAWSGWFTEFGGAVHRRPVQDLAFAVARFIQKGGSFFNYYMYHGGTNFGRTAGGPFITTSYDYDAPLDEYGLMRQPKYGHLKQLHEAIKLCEYALVSSDPTVTSLGTYQQAHVFSAGQQKCAAFLSNYNTKSAARVTFNGRQYNLPPWSISILPDCKNVVFNTAKVAVQHTKMQMLPTGSKLLSWETYDEDISSLGESSTLTAIGLLEQINITRDTSDYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGLPNVGLHYETWETGVRGAVVLHGLDHGNKDLTWQKWSYQVGLKGEAMNLVSPSEATSVDWTRGSLAAQGQQSLKWYKAYFDAPTGNEPLALDLRSMGKGQVWINGQSIGRYWMAYAKGDCKTCSYAGTFRPINCQRRCGHPTQRWYHVPRSWLKPTKNLLVVFEELGGDASRISLVKRSVARVCADAHEHHPTTD************TGNAKVLLQCAPGQSITSIEFASFGTPSGTCGSFQKGTCHAPNSHAMLEKECIGQESCSIFISSGVFGTDPCPNVLKRLSVQAVCSTA******
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MAVGLDTGVPWVMCKEDDAPDPVINSCNGFYCDAFSPNKPYKPTLWTEAWSGWFTEFGGAVHRRPVQDLAFAVARFIQKGGSFFNYYMYHGGTNFGRTAGGPFITTSYDYDAPLDEYGLMRQPKYGHLKQLHEAIKLCEYALVSSDPTVTSLGTYQQAHVFSAGQQKCAAFLSNYNTKSAARVTFNGRQYNLPPWSISILPDCKNVVFNTAKVAVQHTKMQMLPTGSKLLSWETYDEDISSLGESSTLTAIGLLEQINITRDTSDYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGLPNVGLHYETWETGVRGAVVLHGLDHGNKDLTWQKWSYQVGLKGEAMNLVSPSEATSVDWTRGSLAAQGQQSLKWYKAYFDAPTGNEPLALDLRSMGKGQVWINGQSIGRYWMAYAKGDCKTCSYAGTFRPINCQRRCGHPTQRWYHVPRSWLKPTKNLLVVFEELGGDASRISLVKRSVARVCADAHEHHPTTDNNDIENKGNSNSTGNAKVLLQCAPGQSITSIEFASFGTPSGTCGSFQKGTCHAPNSHAMLEKECIGQESCSIFISSGVFGTDPCPNVLKRLSVQAVCSTADANTQS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query644 2.2.26 [Sep-21-2011]
Q9SCV9856 Beta-galactosidase 3 OS=A yes no 0.987 0.742 0.691 0.0
Q10RB4841 Beta-galactosidase 5 OS=O yes no 0.987 0.756 0.700 0.0
Q9MAJ7732 Beta-galactosidase 5 OS=A no no 0.812 0.714 0.751 0.0
P48980835 Beta-galactosidase OS=Sol N/A no 0.982 0.758 0.637 0.0
Q9SCW1847 Beta-galactosidase 1 OS=A no no 0.982 0.747 0.632 0.0
P45582832 Beta-galactosidase OS=Asp N/A no 0.964 0.746 0.609 0.0
Q8W0A1827 Beta-galactosidase 2 OS=O no no 0.965 0.752 0.599 0.0
P48981731 Beta-galactosidase OS=Mal N/A no 0.809 0.712 0.630 0.0
Q9SCV0728 Beta-galactosidase 12 OS= no no 0.802 0.710 0.620 0.0
Q9LFA6727 Beta-galactosidase 2 OS=A no no 0.804 0.712 0.602 0.0
>sp|Q9SCV9|BGAL3_ARATH Beta-galactosidase 3 OS=Arabidopsis thaliana GN=BGAL3 PE=1 SV=1 Back     alignment and function desciption
 Score =  973 bits (2516), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/636 (69%), Positives = 523/636 (82%)

Query: 1   MAVGLDTGVPWVMCKEDDAPDPVINSCNGFYCDAFSPNKPYKPTLWTEAWSGWFTEFGGA 60
           MA+  +TGVPWVMCKEDDAPDPVIN+CNGFYCD+F+PNKPYKP +WTEAWSGWFTEFGG 
Sbjct: 211 MAIATETGVPWVMCKEDDAPDPVINTCNGFYCDSFAPNKPYKPLIWTEAWSGWFTEFGGP 270

Query: 61  VHRRPVQDLAFAVARFIQKGGSFFNYYMYHGGTNFGRTAGGPFITTSYDYDAPLDEYGLM 120
           +H RPVQDLAF VARFIQKGGSF NYYMYHGGTNFGRTAGGPF+TTSYDYDAP+DEYGL+
Sbjct: 271 MHHRPVQDLAFGVARFIQKGGSFVNYYMYHGGTNFGRTAGGPFVTTSYDYDAPIDEYGLI 330

Query: 121 RQPKYGHLKQLHEAIKLCEYALVSSDPTVTSLGTYQQAHVFSAGQQKCAAFLSNYNTKSA 180
           RQPKYGHLK+LH AIK+CE ALVS+DP VTS+G  QQAHV+SA    C+AFL+NY+T+SA
Sbjct: 331 RQPKYGHLKELHRAIKMCEKALVSADPVVTSIGNKQQAHVYSAESGDCSAFLANYDTESA 390

Query: 181 ARVTFNGRQYNLPPWSISILPDCKNVVFNTAKVAVQHTKMQMLPTGSKLLSWETYDEDIS 240
           ARV FN   YNLPPWSISILPDC+N VFNTAKV VQ ++M+MLPT +K   WE+Y ED+S
Sbjct: 391 ARVLFNNVHYNLPPWSISILPDCRNAVFNTAKVGVQTSQMEMLPTDTKNFQWESYLEDLS 450

Query: 241 SLGESSTLTAIGLLEQINITRDTSDYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVH 300
           SL +SST T  GLLEQIN+TRDTSDYLWYMTSV+I  SESFL GG+ PTL ++S GHAVH
Sbjct: 451 SLDDSSTFTTHGLLEQINVTRDTSDYLWYMTSVDIGDSESFLHGGELPTLIIQSTGHAVH 510

Query: 301 VFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGLPNVGLHYETWETGVRG 360
           +F+NGQ  GSAFGTR+NRRFT+ G  NL +G N+IALLS+AVGLPNVG H+E+W TG+ G
Sbjct: 511 IFVNGQLSGSAFGTRQNRRFTYQGKINLHSGTNRIALLSVAVGLPNVGGHFESWNTGILG 570

Query: 361 AVVLHGLDHGNKDLTWQKWSYQVGLKGEAMNLVSPSEATSVDWTRGSLAAQGQQSLKWYK 420
            V LHGL  G  DL+WQKW+YQVGLKGEAMNL  P+   S+ W   SL  Q  Q L W+K
Sbjct: 571 PVALHGLSQGKMDLSWQKWTYQVGLKGEAMNLAFPTNTPSIGWMDASLTVQKPQPLTWHK 630

Query: 421 AYFDAPTGNEPLALDLRSMGKGQVWINGQSIGRYWMAYAKGDCKTCSYAGTFRPINCQRR 480
            YFDAP GNEPLALD+  MGKGQ+W+NG+SIGRYW A+A GDC  CSY GT++P  CQ  
Sbjct: 631 TYFDAPEGNEPLALDMEGMGKGQIWVNGESIGRYWTAFATGDCSHCSYTGTYKPNKCQTG 690

Query: 481 CGHPTQRWYHVPRSWLKPTKNLLVVFEELGGDASRISLVKRSVARVCADAHEHHPTTDNN 540
           CG PTQRWYHVPR+WLKP++NLLV+FEELGG+ S +SLVKRSV+ VCA+  E+HP   N 
Sbjct: 691 CGQPTQRWYHVPRAWLKPSQNLLVIFEELGGNPSTVSLVKRSVSGVCAEVSEYHPNIKNW 750

Query: 541 DIENKGNSNSTGNAKVLLQCAPGQSITSIEFASFGTPSGTCGSFQKGTCHAPNSHAMLEK 600
            IE+ G   +    KV L+C+PGQ+I SI+FASFGTP GTCGS+Q+G CHA  S+A+LE+
Sbjct: 751 QIESYGKGQTFHRPKVHLKCSPGQAIASIKFASFGTPLGTCGSYQQGECHAATSYAILER 810

Query: 601 ECIGQESCSIFISSGVFGTDPCPNVLKRLSVQAVCS 636
           +C+G+  C++ IS+  FG DPCPNVLKRL+V+AVC+
Sbjct: 811 KCVGKARCAVTISNSNFGKDPCPNVLKRLTVEAVCA 846

Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 2EC: 3
>sp|Q10RB4|BGAL5_ORYSJ Beta-galactosidase 5 OS=Oryza sativa subsp. japonica GN=Os03g0165400 PE=2 SV=1 Back     alignment and function description
>sp|Q9MAJ7|BGAL5_ARATH Beta-galactosidase 5 OS=Arabidopsis thaliana GN=BGAL5 PE=2 SV=1 Back     alignment and function description
>sp|P48980|BGAL_SOLLC Beta-galactosidase OS=Solanum lycopersicum PE=1 SV=1 Back     alignment and function description
>sp|Q9SCW1|BGAL1_ARATH Beta-galactosidase 1 OS=Arabidopsis thaliana GN=BGAL1 PE=1 SV=1 Back     alignment and function description
>sp|P45582|BGAL_ASPOF Beta-galactosidase OS=Asparagus officinalis PE=2 SV=1 Back     alignment and function description
>sp|Q8W0A1|BGAL2_ORYSJ Beta-galactosidase 2 OS=Oryza sativa subsp. japonica GN=Os01g0580200 PE=2 SV=1 Back     alignment and function description
>sp|P48981|BGAL_MALDO Beta-galactosidase OS=Malus domestica PE=1 SV=1 Back     alignment and function description
>sp|Q9SCV0|BGA12_ARATH Beta-galactosidase 12 OS=Arabidopsis thaliana GN=BGAL12 PE=2 SV=1 Back     alignment and function description
>sp|Q9LFA6|BGAL2_ARATH Beta-galactosidase 2 OS=Arabidopsis thaliana GN=BGAL2 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query644
255538780 846 beta-galactosidase, putative [Ricinus co 0.987 0.751 0.791 0.0
224082924 853 predicted protein [Populus trichocarpa] 0.996 0.752 0.785 0.0
15081596 854 putative beta-galactosidase BG1 [Vitis v 0.998 0.752 0.779 0.0
147818153 854 hypothetical protein VITISV_013292 [Viti 0.998 0.752 0.779 0.0
225458151 854 PREDICTED: beta-galactosidase 3 [Vitis v 0.998 0.752 0.779 0.0
290782382683 beta-galactosidase 3 [Prunus persica] 0.993 0.937 0.757 0.0
61162206 852 beta-D-galactosidase [Pyrus pyrifolia] 0.984 0.744 0.753 0.0
330689960730 beta-galactosidase [Ziziphus jujuba] 0.995 0.878 0.753 0.0
114217397 849 beta-D-galactosidase [Persea americana] 0.992 0.752 0.748 0.0
359476858 898 PREDICTED: beta-galactosidase 3 [Vitis v 0.987 0.708 0.732 0.0
>gi|255538780|ref|XP_002510455.1| beta-galactosidase, putative [Ricinus communis] gi|223551156|gb|EEF52642.1| beta-galactosidase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1093 bits (2827), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 504/637 (79%), Positives = 572/637 (89%), Gaps = 1/637 (0%)

Query: 1   MAVGLDTGVPWVMCKEDDAPDPVINSCNGFYCDAFSPNKPYKPTLWTEAWSGWFTEFGGA 60
           MAVGLDTGVPWVMCKEDDAPDP+IN+CNGFYCDAF+PNKPYKPTLWTEAWSGWFTEFGG 
Sbjct: 206 MAVGLDTGVPWVMCKEDDAPDPMINTCNGFYCDAFAPNKPYKPTLWTEAWSGWFTEFGGP 265

Query: 61  VHRRPVQDLAFAVARFIQKGGSFFNYYMYHGGTNFGRTAGGPFITTSYDYDAPLDEYGLM 120
           +H+RPV+DLAFAVARFIQKGGS+FNYYMYHGGTNFGR+AGGPFITTSYDYDAP+DEYGL+
Sbjct: 266 IHQRPVEDLAFAVARFIQKGGSYFNYYMYHGGTNFGRSAGGPFITTSYDYDAPIDEYGLI 325

Query: 121 RQPKYGHLKQLHEAIKLCEYALVSSDPTVTSLGTYQQAHVFSAGQQKCAAFLSNYNTKSA 180
           R+PKYGHLK LH+AIKLCE+ALVSSDP++TSLGTYQQAHVFS+G+  CAAFL+NYN KSA
Sbjct: 326 REPKYGHLKALHKAIKLCEHALVSSDPSITSLGTYQQAHVFSSGR-SCAAFLANYNAKSA 384

Query: 181 ARVTFNGRQYNLPPWSISILPDCKNVVFNTAKVAVQHTKMQMLPTGSKLLSWETYDEDIS 240
           ARV FN   Y+LPPWSISILPDC+NVVFNTA+V  Q  +MQMLPTGS+L SWETYDE+IS
Sbjct: 385 ARVMFNNMHYDLPPWSISILPDCRNVVFNTARVGAQTLRMQMLPTGSELFSWETYDEEIS 444

Query: 241 SLGESSTLTAIGLLEQINITRDTSDYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVH 300
           SL +SS +TA+GLLEQIN+TRDTSDYLWY+TSV+IS SE+FLR GQKP+LTV+SAGH +H
Sbjct: 445 SLTDSSRITALGLLEQINVTRDTSDYLWYLTSVDISPSEAFLRNGQKPSLTVQSAGHGLH 504

Query: 301 VFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGLPNVGLHYETWETGVRG 360
           VFINGQF GSAFGTRENR+ TF+GP NLRAG N+IALLSIAVGLPNVGLHYETW+TGV+G
Sbjct: 505 VFINGQFSGSAFGTRENRQLTFTGPVNLRAGTNRIALLSIAVGLPNVGLHYETWKTGVQG 564

Query: 361 AVVLHGLDHGNKDLTWQKWSYQVGLKGEAMNLVSPSEATSVDWTRGSLAAQGQQSLKWYK 420
            V+L+GL+ G KDLTWQKWSYQVGLKGEAMNLVSP+  +SVDW  GSLA+   Q+LKW+K
Sbjct: 565 PVLLNGLNQGKKDLTWQKWSYQVGLKGEAMNLVSPNGVSSVDWIEGSLASSQGQALKWHK 624

Query: 421 AYFDAPTGNEPLALDLRSMGKGQVWINGQSIGRYWMAYAKGDCKTCSYAGTFRPINCQRR 480
           AYFDAP GNEPLALD+RSMGKGQVWINGQSIGRYWMAYAKGDC +CSY  TFRP  CQ  
Sbjct: 625 AYFDAPRGNEPLALDMRSMGKGQVWINGQSIGRYWMAYAKGDCNSCSYIWTFRPSKCQLG 684

Query: 481 CGHPTQRWYHVPRSWLKPTKNLLVVFEELGGDASRISLVKRSVARVCADAHEHHPTTDNN 540
           CG PTQRWYHVPRSWLKPTKNLLVVFEELGGDAS+ISLVKRS+  VCADA+EHHP T N 
Sbjct: 685 CGEPTQRWYHVPRSWLKPTKNLLVVFEELGGDASKISLVKRSIEGVCADAYEHHPATKNY 744

Query: 541 DIENKGNSNSTGNAKVLLQCAPGQSITSIEFASFGTPSGTCGSFQKGTCHAPNSHAMLEK 600
           +      S+    AK+ L+CAPGQ I +I+FASFGTPSGTCGSFQ+GTCHAPN+H+++EK
Sbjct: 745 NTGGNDESSKLHQAKIHLRCAPGQFIAAIKFASFGTPSGTCGSFQQGTCHAPNTHSVIEK 804

Query: 601 ECIGQESCSIFISSGVFGTDPCPNVLKRLSVQAVCST 637
           +CIGQESC + IS+  FG DPCPNVLK+LSV+AVCST
Sbjct: 805 KCIGQESCMVTISNSNFGADPCPNVLKKLSVEAVCST 841

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224082924|ref|XP_002306893.1| predicted protein [Populus trichocarpa] gi|222856342|gb|EEE93889.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|15081596|gb|AAK81874.1| putative beta-galactosidase BG1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147818153|emb|CAN78072.1| hypothetical protein VITISV_013292 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225458151|ref|XP_002280715.1| PREDICTED: beta-galactosidase 3 [Vitis vinifera] gi|302142564|emb|CBI19767.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|290782382|gb|ADD62393.1| beta-galactosidase 3 [Prunus persica] Back     alignment and taxonomy information
>gi|61162206|dbj|BAD91084.1| beta-D-galactosidase [Pyrus pyrifolia] Back     alignment and taxonomy information
>gi|330689960|gb|AEC33272.1| beta-galactosidase [Ziziphus jujuba] Back     alignment and taxonomy information
>gi|114217397|dbj|BAF31234.1| beta-D-galactosidase [Persea americana] Back     alignment and taxonomy information
>gi|359476858|ref|XP_002274449.2| PREDICTED: beta-galactosidase 3 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query644
TAIR|locus:2115310856 BGAL3 "beta-galactosidase 3" [ 0.987 0.742 0.691 8.6e-262
TAIR|locus:2091496847 BGAL1 "beta galactosidase 1" [ 0.982 0.747 0.632 2.8e-231
TAIR|locus:2028265732 BGAL5 "beta-galactosidase 5" [ 0.812 0.714 0.751 2e-230
TAIR|locus:2120830728 BGAL12 "beta-galactosidase 12" 0.802 0.710 0.620 7.4e-185
TAIR|locus:2085131727 BGAL2 "beta-galactosidase 2" [ 0.804 0.712 0.602 1.6e-180
TAIR|locus:2170282724 BGAL4 "beta-galactosidase 4" [ 0.802 0.714 0.596 4.1e-175
TAIR|locus:2056623852 BGAL8 "beta-galactosidase 8" [ 0.975 0.737 0.506 8.9e-173
TAIR|locus:2046452887 BGAL9 "beta galactosidase 9" [ 0.403 0.293 0.555 1.6e-160
TAIR|locus:2163951741 BGAL10 "beta-galactosidase 10" 0.812 0.705 0.500 9.6e-144
TAIR|locus:2059899848 BGAL13 [Arabidopsis thaliana ( 0.692 0.525 0.426 1.3e-143
TAIR|locus:2115310 BGAL3 "beta-galactosidase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2519 (891.8 bits), Expect = 8.6e-262, P = 8.6e-262
 Identities = 440/636 (69%), Positives = 523/636 (82%)

Query:     1 MAVGLDTGVPWVMCKEDDAPDPVINSCNGFYCDAFSPNKPYKPTLWTEAWSGWFTEFGGA 60
             MA+  +TGVPWVMCKEDDAPDPVIN+CNGFYCD+F+PNKPYKP +WTEAWSGWFTEFGG 
Sbjct:   211 MAIATETGVPWVMCKEDDAPDPVINTCNGFYCDSFAPNKPYKPLIWTEAWSGWFTEFGGP 270

Query:    61 VHRRPVQDLAFAVARFIQKGGSFFNYYMYHGGTNFGRTAGGPFITTSYDYDAPLDEYGLM 120
             +H RPVQDLAF VARFIQKGGSF NYYMYHGGTNFGRTAGGPF+TTSYDYDAP+DEYGL+
Sbjct:   271 MHHRPVQDLAFGVARFIQKGGSFVNYYMYHGGTNFGRTAGGPFVTTSYDYDAPIDEYGLI 330

Query:   121 RQPKYGHLKQLHEAIKLCEYALVSSDPTVTSLGTYQQAHVFSAGQQKCAAFLSNYNTKSA 180
             RQPKYGHLK+LH AIK+CE ALVS+DP VTS+G  QQAHV+SA    C+AFL+NY+T+SA
Sbjct:   331 RQPKYGHLKELHRAIKMCEKALVSADPVVTSIGNKQQAHVYSAESGDCSAFLANYDTESA 390

Query:   181 ARVTFNGRQYNLPPWSISILPDCKNVVFNTAKVAVQHTKMQMLPTGSKLLSWETYDEDIS 240
             ARV FN   YNLPPWSISILPDC+N VFNTAKV VQ ++M+MLPT +K   WE+Y ED+S
Sbjct:   391 ARVLFNNVHYNLPPWSISILPDCRNAVFNTAKVGVQTSQMEMLPTDTKNFQWESYLEDLS 450

Query:   241 SLGESSTLTAIGLLEQINITRDTSDYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVH 300
             SL +SST T  GLLEQIN+TRDTSDYLWYMTSV+I  SESFL GG+ PTL ++S GHAVH
Sbjct:   451 SLDDSSTFTTHGLLEQINVTRDTSDYLWYMTSVDIGDSESFLHGGELPTLIIQSTGHAVH 510

Query:   301 VFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGLPNVGLHYETWETGVRG 360
             +F+NGQ  GSAFGTR+NRRFT+ G  NL +G N+IALLS+AVGLPNVG H+E+W TG+ G
Sbjct:   511 IFVNGQLSGSAFGTRQNRRFTYQGKINLHSGTNRIALLSVAVGLPNVGGHFESWNTGILG 570

Query:   361 AVVLHGLDHGNKDLTWQKWSYQVGLKGEAMNLVSPSEATSVDWTRGSLAAQGQQSLKWYK 420
              V LHGL  G  DL+WQKW+YQVGLKGEAMNL  P+   S+ W   SL  Q  Q L W+K
Sbjct:   571 PVALHGLSQGKMDLSWQKWTYQVGLKGEAMNLAFPTNTPSIGWMDASLTVQKPQPLTWHK 630

Query:   421 AYFDAPTGNEPLALDLRSMGKGQVWINGQSIGRYWMAYAKGDCKTCSYAGTFRPINCQRR 480
              YFDAP GNEPLALD+  MGKGQ+W+NG+SIGRYW A+A GDC  CSY GT++P  CQ  
Sbjct:   631 TYFDAPEGNEPLALDMEGMGKGQIWVNGESIGRYWTAFATGDCSHCSYTGTYKPNKCQTG 690

Query:   481 CGHPTQRWYHVPRSWLKPTKNLLVVFEELGGDASRISLVKRSVARVCADAHEHHPTTDNN 540
             CG PTQRWYHVPR+WLKP++NLLV+FEELGG+ S +SLVKRSV+ VCA+  E+HP   N 
Sbjct:   691 CGQPTQRWYHVPRAWLKPSQNLLVIFEELGGNPSTVSLVKRSVSGVCAEVSEYHPNIKNW 750

Query:   541 DIENKGNSNSTGNAKVLLQCAPGQSITSIEFASFGTPSGTCGSFQKGTCHAPNSHAMLEK 600
              IE+ G   +    KV L+C+PGQ+I SI+FASFGTP GTCGS+Q+G CHA  S+A+LE+
Sbjct:   751 QIESYGKGQTFHRPKVHLKCSPGQAIASIKFASFGTPLGTCGSYQQGECHAATSYAILER 810

Query:   601 ECIGQESCSIFISSGVFGTDPCPNVLKRLSVQAVCS 636
             +C+G+  C++ IS+  FG DPCPNVLKRL+V+AVC+
Sbjct:   811 KCVGKARCAVTISNSNFGKDPCPNVLKRLTVEAVCA 846
GO:0003824 "catalytic activity" evidence=IEA
GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA
GO:0004565 "beta-galactosidase activity" evidence=ISS;IDA
GO:0005576 "extracellular region" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA
GO:0030246 "carbohydrate binding" evidence=IEA
GO:0043169 "cation binding" evidence=IEA
GO:0006598 "polyamine catabolic process" evidence=RCA
GO:0009664 "plant-type cell wall organization" evidence=RCA
GO:0009698 "phenylpropanoid metabolic process" evidence=RCA
GO:0009832 "plant-type cell wall biogenesis" evidence=RCA
GO:0010075 "regulation of meristem growth" evidence=RCA
GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA
TAIR|locus:2091496 BGAL1 "beta galactosidase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028265 BGAL5 "beta-galactosidase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2120830 BGAL12 "beta-galactosidase 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2085131 BGAL2 "beta-galactosidase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2170282 BGAL4 "beta-galactosidase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2056623 BGAL8 "beta-galactosidase 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2046452 BGAL9 "beta galactosidase 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163951 BGAL10 "beta-galactosidase 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2059899 BGAL13 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q10RB4BGAL5_ORYSJ3, ., 2, ., 1, ., 2, 30.70060.98750.7562yesno
Q9SCV9BGAL3_ARATH3, ., 2, ., 1, ., 2, 30.69180.98750.7429yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.1.230.946
3rd Layer3.2.10.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query644
PLN03059840 PLN03059, PLN03059, beta-galactosidase; Provisiona 0.0
pfam01301318 pfam01301, Glyco_hydro_35, Glycosyl hydrolases fam 1e-60
pfam0214079 pfam02140, Gal_Lectin, Galactose binding lectin do 7e-25
>gnl|CDD|166698 PLN03059, PLN03059, beta-galactosidase; Provisional Back     alignment and domain information 
 Score =  901 bits (2329), Expect = 0.0
 Identities = 400/637 (62%), Positives = 486/637 (76%), Gaps = 5/637 (0%)

Query: 1   MAVGLDTGVPWVMCKEDDAPDPVINSCNGFYCDAFSPNKPYKPTLWTEAWSGWFTEFGGA 60
           MAV L TGVPWVMCK++DAPDPVI++CNGFYC+ F PNK YKP +WTEAW+GW+TEFGGA
Sbjct: 208 MAVKLGTGVPWVMCKQEDAPDPVIDTCNGFYCENFKPNKDYKPKMWTEAWTGWYTEFGGA 267

Query: 61  VHRRPVQDLAFAVARFIQKGGSFFNYYMYHGGTNFGRTAGGPFITTSYDYDAPLDEYGLM 120
           V  RP +DLAF+VARFIQ GGSF NYYMYHGGTNFGRTAGGPFI TSYDYDAPLDEYGL 
Sbjct: 268 VPNRPAEDLAFSVARFIQNGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLP 327

Query: 121 RQPKYGHLKQLHEAIKLCEYALVSSDPTVTSLGTYQQAHVFSAGQQKCAAFLSNYNTKSA 180
           R+PK+GHL+ LH+AIKLCE ALVS DPTVTSLG+ Q+AHVF + +  CAAFL+NY+TK +
Sbjct: 328 REPKWGHLRDLHKAIKLCEPALVSVDPTVTSLGSNQEAHVFKS-KSACAAFLANYDTKYS 386

Query: 181 ARVTFNGRQYNLPPWSISILPDCKNVVFNTAKVAVQHTKMQMLPTGSKLLSWETYDEDIS 240
            +VTF   QY+LPPWS+SILPDCK  VFNTA++  Q ++M+M P GS   SW++Y+E+ +
Sbjct: 387 VKVTFGNGQYDLPPWSVSILPDCKTAVFNTARLGAQSSQMKMNPVGST-FSWQSYNEETA 445

Query: 241 SLGESSTLTAIGLLEQINITRDTSDYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVH 300
           S     T T  GL EQIN+TRD +DYLWYMT V I   E FL+ GQ P LT+ SAGHA+H
Sbjct: 446 SAYTDDTTTMDGLWEQINVTRDATDYLWYMTEVHIDPDEGFLKTGQYPVLTIFSAGHALH 505

Query: 301 VFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGLPNVGLHYETWETGVRG 360
           VFINGQ  G+ +G   N + TFS    L  GINKI+LLS+AVGLPNVGLH+ETW  GV G
Sbjct: 506 VFINGQLAGTVYGELSNPKLTFSQNVKLTVGINKISLLSVAVGLPNVGLHFETWNAGVLG 565

Query: 361 AVVLHGLDHGNKDLTWQKWSYQVGLKGEAMNLVSPSEATSVDWTRGSLAAQGQQSLKWYK 420
            V L GL+ G +DL+  KWSY++GLKGEA++L + + ++SV+W  GSL AQ +Q L WYK
Sbjct: 566 PVTLKGLNEGTRDLSGWKWSYKIGLKGEALSLHTITGSSSVEWVEGSLLAQ-KQPLTWYK 624

Query: 421 AYFDAPTGNEPLALDLRSMGKGQVWINGQSIGRYWMAY-AKGDCKTCSYAGTFRPINCQR 479
             FDAP GN+PLALD+ SMGKGQ+WINGQSIGR+W AY A G C  C+YAGTF    C+ 
Sbjct: 625 TTFDAPGGNDPLALDMSSMGKGQIWINGQSIGRHWPAYTAHGSCNGCNYAGTFDDKKCRT 684

Query: 480 RCGHPTQRWYHVPRSWLKPTKNLLVVFEELGGDASRISLVKRSVARVCADAHEHHPTTDN 539
            CG P+QRWYHVPRSWLKP+ NLL+VFEE GG+ + ISLVKR+   VCAD  E  P   N
Sbjct: 685 NCGEPSQRWYHVPRSWLKPSGNLLIVFEEWGGNPAGISLVKRTTDSVCADIFEGQPALKN 744

Query: 540 NDIENKGNSNSTGNAKVLLQCAPGQSITSIEFASFGTPSGTCGSFQKGTCHAPNSHAMLE 599
             I   G  NS    K  L C PGQ I+ I+FASFG P GTCGSF++G+CHA  S+   E
Sbjct: 745 WQIIASGKVNSL-QPKAHLWCPPGQKISKIKFASFGVPQGTCGSFREGSCHAHKSYDAFE 803

Query: 600 KECIGQESCSIFISSGVFGTDPCPNVLKRLSVQAVCS 636
           + CIG++SCS+ ++  VFG DPCP+ +K+LSV+AVCS
Sbjct: 804 RNCIGKQSCSVTVAPEVFGGDPCPDSMKKLSVEAVCS 840

Length = 840
>gnl|CDD|216423 pfam01301, Glyco_hydro_35, Glycosyl hydrolases family 35 Back     alignment and domain information
>gnl|CDD|216897 pfam02140, Gal_Lectin, Galactose binding lectin domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 644
PLN03059840 beta-galactosidase; Provisional 100.0
KOG0496649 consensus Beta-galactosidase [Carbohydrate transpo 100.0
PF01301319 Glyco_hydro_35: Glycosyl hydrolases family 35; Int 99.96
KOG4729 265 consensus Galactoside-binding lectin [General func 99.85
PF0214080 Gal_Lectin: Galactose binding lectin domain; Inter 99.81
PF13364111 BetaGal_dom4_5: Beta-galactosidase jelly roll doma 99.02
PF13364111 BetaGal_dom4_5: Beta-galactosidase jelly roll doma 98.58
PF02837167 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sug 98.28
PF02837167 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sug 96.89
PRK10150 604 beta-D-glucuronidase; Provisional 96.72
COG1874673 LacA Beta-galactosidase [Carbohydrate transport an 96.58
PRK10340 1021 ebgA cryptic beta-D-galactosidase subunit alpha; R 96.38
PRK09525 1027 lacZ beta-D-galactosidase; Reviewed 96.04
PRK10340 1021 ebgA cryptic beta-D-galactosidase subunit alpha; R 93.22
PRK10150 604 beta-D-glucuronidase; Provisional 93.02
PRK09525 1027 lacZ beta-D-galactosidase; Reviewed 92.06
PF11875151 DUF3395: Domain of unknown function (DUF3395); Int 86.92
PF02449374 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR0 85.9
>PLN03059 beta-galactosidase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.5e-153  Score=1304.40  Aligned_cols=632  Identities=62%  Similarity=1.146  Sum_probs=571.8

Q ss_pred             CcccCCCcceEEEecCCCCCcccccccCcccccccCCCCCCCCeeEeeecCccccccCCCCCCCCHHHHHHHHHHHHHhC
Q 006468            1 MAVGLDTGVPWVMCKEDDAPDPVINSCNGFYCDAFSPNKPYKPTLWTEAWSGWFTEFGGAVHRRPVQDLAFAVARFIQKG   80 (644)
Q Consensus         1 ~a~~~g~~vP~~~c~~~~~~~~~i~t~ng~~~~~f~~~~p~~P~~~~E~~~Gwf~~Wg~~~~~~~~~~~~~~~~~~l~~g   80 (644)
                      ||+++||+|||+||+|+++++++|+||||++|+.|....+.+|+|+||||+|||++||++++.|+++|++..++++|++|
T Consensus       208 ~~~~~Gi~VPl~t~dg~~~~~~v~~t~Ng~~~~~f~~~~~~~P~m~tE~w~GWf~~wG~~~~~r~~~d~a~~~~~~l~~g  287 (840)
T PLN03059        208 MAVKLGTGVPWVMCKQEDAPDPVIDTCNGFYCENFKPNKDYKPKMWTEAWTGWYTEFGGAVPNRPAEDLAFSVARFIQNG  287 (840)
T ss_pred             HHHHcCCCcceEECCCCCCCccceecCCCchhhhcccCCCCCCcEEeccCchhHhhcCCCCCcCCHHHHHHHHHHHHHcC
Confidence            67899999999999999889999999999999999887777999999999999999999999999999999999999999


Q ss_pred             CceeeeeEEeccCCCCCCCCCCcccccccCCCCCCcCCCCCchhHHHHHHHHHHHHhhhccccCCCCcccCCCccceeee
Q 006468           81 GSFFNYYMYHGGTNFGRTAGGPFITTSYDYDAPLDEYGLMRQPKYGHLKQLHEAIKLCEYALVSSDPTVTSLGTYQQAHV  160 (644)
Q Consensus        81 ~s~~n~YM~hGGTNfG~~~G~~~~~TSYDy~Apl~E~G~~~~~ky~~lr~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~  160 (644)
                      +|++|||||||||||||||||++++|||||||||+|+|++++|||.+||++|.+++.+++.|+..+|....+++.+++++
T Consensus       288 ~S~~N~YMfhGGTNFG~~~Ga~~~~TSYDYdAPL~E~G~~t~pKy~~lr~l~~~~~~~~~~l~~~~p~~~~lg~~~ea~~  367 (840)
T PLN03059        288 GSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLPREPKWGHLRDLHKAIKLCEPALVSVDPTVTSLGSNQEAHV  367 (840)
T ss_pred             CeeEEeeeccCcCCcccccCCCccccccccCCccccccCcchhHHHHHHHHHHHHHhcCccccCCCCceeccCCceeEEE
Confidence            99889999999999999999999999999999999999995469999999999999998888877777778999999999


Q ss_pred             eccCCcceeeEeeccCCccceEEEeCCeeeccCCCceeecCCCCceeeccceeeeeeeeeeccccccccccccccccccc
Q 006468          161 FSAGQQKCAAFLSNYNTKSAARVTFNGRQYNLPPWSISILPDCKNVVFNTAKVAVQHTKMQMLPTGSKLLSWETYDEDIS  240 (644)
Q Consensus       161 y~~~~~~~~~Fl~n~~~~~~~~v~~~~~~~~l~~~sv~il~~~~~v~f~t~~v~~~~~~~~~~~~~~~~~~w~~~~e~~~  240 (644)
                      |+... .|++|+.|.+.+...+|.|++++|.||+|||||||||+.++|+|++++.|+..++..+. ...+.|+++.|++.
T Consensus       368 y~~~~-~caaFl~n~~~~~~~~v~f~g~~y~lp~~Svsilpd~~~~lfnta~v~~q~~~~~~~~~-~~~~~w~~~~e~~~  445 (840)
T PLN03059        368 FKSKS-ACAAFLANYDTKYSVKVTFGNGQYDLPPWSVSILPDCKTAVFNTARLGAQSSQMKMNPV-GSTFSWQSYNEETA  445 (840)
T ss_pred             ccCcc-chhhheeccCCCCceeEEECCcccccCccceeecccccceeeeccccccccceeecccc-cccccceeeccccc
Confidence            99666 79999999998899999999999999999999999999999999999888766543322 34668999999954


Q ss_pred             cccCCCccccccchhhcCCCCCCccEEEEEEEeecCCCcccccCCCCceeeeCCcceEEEEEECCEEEEEEEccccCcce
Q 006468          241 SLGESSTLTAIGLLEQINITRDTSDYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRF  320 (644)
Q Consensus       241 ~~~~~~~~~~~~~~Eql~~t~d~~Gyl~Y~t~i~~~~~~~~~~~g~~~~L~v~~~~D~a~Vfvng~~vG~~~~~~~~~~~  320 (644)
                      +...+.+++...++||+++|+|.+||+||+|+|....++..++.+.+++|+|.+++|++||||||+++|++++......+
T Consensus       446 ~~~~~~~~~~e~l~e~~n~t~d~~dYlwY~t~i~~~~~~~~~~~~~~~~L~v~~~~d~~~vFVNg~~~Gt~~~~~~~~~~  525 (840)
T PLN03059        446 SAYTDDTTTMDGLWEQINVTRDATDYLWYMTEVHIDPDEGFLKTGQYPVLTIFSAGHALHVFINGQLAGTVYGELSNPKL  525 (840)
T ss_pred             ccccCCCcchhhHHHhhcccCCCCceEEEEEEEeecCCccccccCCCceEEEcccCcEEEEEECCEEEEEEEeecCCcce
Confidence            33133566677889999999999999999999988766544566777899999999999999999999999987766678


Q ss_pred             EEeecccccCCCCeEEEEEEecCccccccCCCccccceeecEEEccccCCCccCccCCceEeccCccccccccCCCCCCC
Q 006468          321 TFSGPANLRAGINKIALLSIAVGLPNVGLHYETWETGVRGAVVLHGLDHGNKDLTWQKWSYQVGLKGEAMNLVSPSEATS  400 (644)
Q Consensus       321 ~~~~~~~l~~g~~~L~ILven~Gr~N~G~~~~~~~KGI~G~V~l~g~~~~~~~L~~~~W~~~~~l~ge~~~~~~~~~~~~  400 (644)
                      .++.++.++.|.|+|+||||||||+|||++|+++.|||+|+|+|+|.+.+.++|+++.|.|+++|.||.++|+.+++...
T Consensus       526 ~~~~~v~l~~g~n~L~iLse~vG~~NyG~~le~~~kGI~g~V~i~g~~~g~~dls~~~W~y~lgL~GE~~~i~~~~~~~~  605 (840)
T PLN03059        526 TFSQNVKLTVGINKISLLSVAVGLPNVGLHFETWNAGVLGPVTLKGLNEGTRDLSGWKWSYKIGLKGEALSLHTITGSSS  605 (840)
T ss_pred             EEecccccCCCceEEEEEEEeCCCCccCcccccccccccccEEEecccCCceecccCccccccCccceeccccccCCCCC
Confidence            88877788889999999999999999999999999999999999998777789998889999999999999887655557


Q ss_pred             CcccCCCccccccCCceEEEEEEeCCCCCCceEEEeCCCceEEEEECCeeeeeeeeccc-cCCCCCCccCCCcCCccccC
Q 006468          401 VDWTRGSLAAQGQQSLKWYKAYFDAPTGNEPLALDLRSMGKGQVWINGQSIGRYWMAYA-KGDCKTCSYAGTFRPINCQR  479 (644)
Q Consensus       401 ~~W~~~~~~~~~~~~~~~Yr~~F~~p~~~d~~~Ld~~g~gKG~vwVNG~nlGRYW~~~~-~g~~~~~~~~G~~~~~~~~~  479 (644)
                      +.|...+..+. .++|+|||++|++|++.|||||||++||||+|||||+||||||+.++ .+.|+.|+|+|.|++.||+|
T Consensus       606 ~~W~~~~~~~~-~~p~twYK~~Fd~p~g~Dpv~LDm~gmGKG~aWVNG~nIGRYW~~~a~~~gC~~c~y~g~~~~~kc~~  684 (840)
T PLN03059        606 VEWVEGSLLAQ-KQPLTWYKTTFDAPGGNDPLALDMSSMGKGQIWINGQSIGRHWPAYTAHGSCNGCNYAGTFDDKKCRT  684 (840)
T ss_pred             ccccccccccC-CCCceEEEEEEeCCCCCCCEEEecccCCCeeEEECCcccccccccccccCCCccccccccccchhhhc
Confidence            88976543333 45799999999999999999999999999999999999999997642 23348899999999999999


Q ss_pred             CCCCCceeeeecCcccccCCcceEEEEEecCCCCcceEEEeecccccccccccCCCCCCCcccccCCCCCcCCCCceeee
Q 006468          480 RCGHPTQRWYHVPRSWLKPTKNLLVVFEELGGDASRISLVKRSVARVCADAHEHHPTTDNNDIENKGNSNSTGNAKVLLQ  559 (644)
Q Consensus       480 ~~~~PQqtlY~VP~~~Lk~g~N~ivvfE~~g~~~~~i~l~~~~~~~~c~~~~e~~p~~~~~~~~~~~~~~~ce~~~~~L~  559 (644)
                      |||+|||+|||||++|||+|+|+||||||+|++|..|+|.++++++||++++|+|| +|.+|.+.....-+-....++|+
T Consensus       685 ~cggP~q~lYHVPr~~Lk~g~N~lViFEe~gg~p~~I~~~~~~~~~~c~~~~e~~p-~~~~w~~~~~~~~~~~~~~~~L~  763 (840)
T PLN03059        685 NCGEPSQRWYHVPRSWLKPSGNLLIVFEEWGGNPAGISLVKRTTDSVCADIFEGQP-ALKNWQIIASGKVNSLQPKAHLW  763 (840)
T ss_pred             cCCCceeEEEeCcHHHhccCCceEEEEEecCCCCCceEEEEeecCcccccccccCC-ccccccccccccccccCCcEEEE
Confidence            99999999999999999999999999999999999999999999999999999995 69999995555423556789999


Q ss_pred             cCCCCeEeeeeeeccCCCCCCCCCCCCCCccCCChHHHHHHHcCCCCceEEEecCCCccCCCCCCCCceEEEEEEee
Q 006468          560 CAPGQSITSIEFASFGTPSGTCGSFQKGTCHAPNSHAMLEKECIGQESCSIFISSGVFGTDPCPNVLKRLSVQAVCS  636 (644)
Q Consensus       560 C~~g~~Is~I~~A~YGr~~~~C~~~~~~~C~~~~s~~~V~~~C~Gk~~C~v~a~~~~Fg~DPC~g~~KYL~V~Y~C~  636 (644)
                      |+.|++|++|.+|+|||+.++|+++.+++|++++++++|+++|+||++|+|.+++.+||+|||+||+|||+|+|.|+
T Consensus       764 C~~G~~Is~I~fAsYGrp~gtC~~~~~g~C~a~~S~~vV~kaC~Gk~~CsV~asn~~FggDPC~gt~KyL~V~~~Cs  840 (840)
T PLN03059        764 CPPGQKISKIKFASFGVPQGTCGSFREGSCHAHKSYDAFERNCIGKQSCSVTVAPEVFGGDPCPDSMKKLSVEAVCS  840 (840)
T ss_pred             CCCCceEEEEEEecCCCCCCCCCCCCCCCEeCCcHHHHHHHHCCCCCceEEEeccceecCCCCCCceeEEEEEEEeC
Confidence            99999997799999999999999999999999999999999999999999999999996699999999999999994

>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3 Back     alignment and domain information
>KOG4729 consensus Galactoside-binding lectin [General function prediction only] Back     alignment and domain information
>PF02140 Gal_Lectin: Galactose binding lectin domain; InterPro: IPR000922 The D-galactoside binding lectin purified from sea urchin (Anthocidaris crassispina) eggs exists as a disulphide-linked homodimer of two subunits; the dimeric form is essential for hemagglutination activity [] Back     alignment and domain information
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A Back     alignment and domain information
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A Back     alignment and domain information
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PRK10150 beta-D-glucuronidase; Provisional Back     alignment and domain information
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed Back     alignment and domain information
>PRK09525 lacZ beta-D-galactosidase; Reviewed Back     alignment and domain information
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed Back     alignment and domain information
>PRK10150 beta-D-glucuronidase; Provisional Back     alignment and domain information
>PRK09525 lacZ beta-D-galactosidase; Reviewed Back     alignment and domain information
>PF11875 DUF3395: Domain of unknown function (DUF3395); InterPro: IPR024586 Chaperone DnaJ was originally characterised from Escherichia coli as a 41 kDa heat shock protein Back     alignment and domain information
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query644
3d3a_A612 Crystal Structure Of A Beta-Galactosidase From Bact 1e-09
4e8c_A595 Crystal Structure Of Streptococcal Beta-Galactosida 2e-08
4e8c_A595 Crystal Structure Of Streptococcal Beta-Galactosida 4e-07
3thc_A654 Crystal Structure Of Human Beta-Galactosidase In Co 1e-05
1tg7_A 971 Native Structure Of Beta-Galactosidase From Penicil 4e-04
2jx9_A106 Solution Structure Of The Gal_lectin Domain Of Mous 8e-04
>pdb|3D3A|A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron Length = 612 Back     alignment and structure 
Iteration: 1

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 65/142 (45%), Gaps = 19/142 (13%)
Query: 7   TGVPWVMCK-----EDDAPDPV---INSCNGFYCDA----FSPNKPYKPTLWTEAWSGWF 54
           TGVP   C      E++A D +   IN   G   D         +P  P   +E WSGWF
Sbjct: 186 TGVPLFQCDWNSNFENNALDDLLWTINFGTGANIDEQFKRLKELRPDTPLXCSEFWSGWF 245
Query: 55  TEFGGAVHRRPVQDLAFAVARFIQKGGSFFNYYMYHGGTNFGRTAGGPF-----ITTSYD 109
             +G     R  ++L       + +  S F+ Y  HGGT+FG   G  F       TSYD
Sbjct: 246 DHWGAKHETRSAEELVKGXKEXLDRNIS-FSLYXTHGGTSFGHWGGANFPNFSPTCTSYD 304
Query: 110 YDAPLDEYGLMRQPKYGHLKQL 131
           YDAP++E G +  PKY  ++ L
Sbjct: 305 YDAPINESGKV-TPKYLEVRNL 325
>pdb|4E8C|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase In Complex With Galactose Length = 595 Back     alignment and structure
>pdb|4E8C|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase In Complex With Galactose Length = 595 Back     alignment and structure
>pdb|3THC|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex With Galactose Length = 654 Back     alignment and structure
>pdb|1TG7|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium Sp. Length = 971 Back     alignment and structure
>pdb|2JX9|A Chain A, Solution Structure Of The Gal_lectin Domain Of Mouse Latrophilin-1 Gpcr Length = 106 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query644
3og2_A1003 Beta-galactosidase; TIM barrel domain, glycoside h 4e-82
3og2_A1003 Beta-galactosidase; TIM barrel domain, glycoside h 1e-07
1tg7_A971 Beta-galactosidase; TIM barrel domain, glycoside h 6e-64
1tg7_A971 Beta-galactosidase; TIM barrel domain, glycoside h 1e-07
3d3a_A612 Beta-galactosidase; protein structure initiative I 1e-55
3d3a_A612 Beta-galactosidase; protein structure initiative I 1e-40
3thd_A654 Beta-galactosidase; TIM-barrel domain, glycosyl hy 5e-50
3thd_A654 Beta-galactosidase; TIM-barrel domain, glycosyl hy 9e-34
4e8d_A595 Glycosyl hydrolase, family 35; TIM barrel, beta-pr 7e-40
4e8d_A595 Glycosyl hydrolase, family 35; TIM barrel, beta-pr 1e-35
2jx9_A106 Latrophilin 1; lectin, beta-sandwich, disulphide, 3e-23
2zx2_A195 CSL3; lectin, rhamnose, innate immunity, immune sy 6e-17
2zx2_A195 CSL3; lectin, rhamnose, innate immunity, immune sy 2e-16
>3og2_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family 35, glycoprot hydrolase; HET: NAG BMA MAN GLC; 1.20A {Trichoderma reesei} PDB: 3ogr_A* 3ogs_A* 3ogv_A* Length = 1003 Back     alignment and structure
 Score =  278 bits (712), Expect = 4e-82
 Identities = 108/631 (17%), Positives = 182/631 (28%), Gaps = 126/631 (19%)

Query: 1   MAVGLDTGVPWVMC----KEDDAPDPVINSCNGFYCDAFSPN------------------ 38
            A      VP +          AP   + S + +  D +                     
Sbjct: 202 QARNAGIIVPLINNDAFPGGTGAPGTGLGSVDIYGHDGYPLGFDCAHPSAWPDNGLPTTW 261

Query: 39  -------KPYKPTLWTEAWSGWFTEFGGAVHRRPVQDLAFAVARFIQK-----GGSFFNY 86
                   P  P    E   G F  FGG    +    +     R   K     G + FN 
Sbjct: 262 RQDHLNISPSTPFSLVEFQGGAFDPFGGWGFEQCSALVNHEFERVFYKNNMAAGVTIFNI 321

Query: 87  YMYHGGTNFGRTAGGPFITTSYDYDAPLDEYGLMRQPKYGHLKQLHEAIKLCEYALVSSD 146
           YM  GGTN+G   G P   TSYDY A + E   + + KY  LK   + +K+     +++ 
Sbjct: 322 YMTFGGTNWGNL-GHPGGYTSYDYGASIREDRRIDREKYSELKLQGQFLKVSP-GYITAT 379

Query: 147 PTVTSLGTYQQAH---VFSAGQQKCAAFL----SNYNTKSAA----RVTFNGRQYNLPPW 195
           P   + G Y  +    +     ++   F     +NY++   A    ++  +     +P  
Sbjct: 380 PENATQGVYSDSQNIVITPLLAKESGDFFVVRHANYSSTDTASYTVKLPTSAGDLTIPQL 439

Query: 196 SISILPDCKNVVFNTAKVAVQHTKMQMLPTGSKLLSWETYDED----------------I 239
             S+    ++   +     V      +L + +++ +W  + E                 +
Sbjct: 440 GGSLTLTGRDSKIHVTDYPVGKFT--LLYSTAEIFTWNEFAEKTVLVLYGGAQELHEFAV 497

Query: 240 SSLGESSTLTAIGLLEQINITRDTSDYLWYMTSVEISSSESFLRGGQKPTLTV--ESAGH 297
            +   SS       +E  N+T  T+  L  +     SS+   ++ G      V   SA +
Sbjct: 498 KNPFGSSKTAKAKKIEGSNVTIHTTSNLTVVLQWTASSARQVVQLGSLVIYMVDRNSAYN 557

Query: 298 AVHVFINGQFLGSAFGTR--ENRRFTFSGPANLRAGINKIALLSIAVGLPNVGLHYETWE 355
                + G    SA+G+          +G   +R+   K   LS+     NV    E   
Sbjct: 558 YWVPTLPGSGKQSAYGSSLMNPDSVIINGGYLIRSVAIKGNALSV-QADFNVTTPLEIIG 616

Query: 356 T----------------------GVRGAVVLHGLDHGNKDLTWQKWSYQVGLKGEAMNLV 393
                                         +        +LT  KW     L  E  +  
Sbjct: 617 IPKGISKLAVNGKELGYSVSELGDWIAHPAIEIPHVQVPELTKLKWYKVDSLP-EIRSNY 675

Query: 394 SPSEATSVDWTRGSLAAQ---GQQSL-----------KWYKAYFDAPTGNEPLALDLR-- 437
             S     +    +          SL             ++  F A T  + L L  +  
Sbjct: 676 DDSRWPLANLRTSNNTYAPLKTPVSLYGSDYGFHAGTLLFRGRFTARTARQQLFLSTQGG 735

Query: 438 SMGKGQVWINGQSIGRYWMAYAKGDCKTCSYAGTFRPIN-----------CQRRCGHPTQ 486
           S     VW+N + IG +      G     +   ++                    G   +
Sbjct: 736 SAFASSVWLNDRFIGSFT-----GFDAASAANSSYTLDRLVRGRRYILTVVVDSTGLD-E 789

Query: 487 RWYHVPRSWLKPTKNLLVVFEELGGDASRIS 517
            W     S   P   L        G    IS
Sbjct: 790 NWTTGDDSMKAPRGILDYALTSSSGANVSIS 820
>3og2_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family 35, glycoprot hydrolase; HET: NAG BMA MAN GLC; 1.20A {Trichoderma reesei} PDB: 3ogr_A* 3ogs_A* 3ogv_A* Length = 1003 Back     alignment and structure
>1tg7_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family GH35, glycopr penicillium, hydrolase; HET: NAG BMA MAN; 1.90A {Penicillium SP} SCOP: b.149.1.1 b.18.1.27 b.18.1.27 b.71.1.5 c.1.8.14 PDB: 1xc6_A* Length = 971 Back     alignment and structure
>1tg7_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family GH35, glycopr penicillium, hydrolase; HET: NAG BMA MAN; 1.90A {Penicillium SP} SCOP: b.149.1.1 b.18.1.27 b.18.1.27 b.71.1.5 c.1.8.14 PDB: 1xc6_A* Length = 971 Back     alignment and structure
>3d3a_A Beta-galactosidase; protein structure initiative II, PSI II, NYSGXRC, 11092F, structural genomics; 2.15A {Bacteroides thetaiotaomicron vpi-5482} Length = 612 Back     alignment and structure
>3d3a_A Beta-galactosidase; protein structure initiative II, PSI II, NYSGXRC, 11092F, structural genomics; 2.15A {Bacteroides thetaiotaomicron vpi-5482} Length = 612 Back     alignment and structure
>3thd_A Beta-galactosidase; TIM-barrel domain, glycosyl hydrolase, glycosylation, hydrolase; HET: NAG DGJ; 1.79A {Homo sapiens} PDB: 3thc_A* Length = 654 Back     alignment and structure
>3thd_A Beta-galactosidase; TIM-barrel domain, glycosyl hydrolase, glycosylation, hydrolase; HET: NAG DGJ; 1.79A {Homo sapiens} PDB: 3thc_A* Length = 654 Back     alignment and structure
>4e8d_A Glycosyl hydrolase, family 35; TIM barrel, beta-propeller, glycohydrolase; 1.80A {Streptococcus pneumoniae} PDB: 4e8c_A Length = 595 Back     alignment and structure
>4e8d_A Glycosyl hydrolase, family 35; TIM barrel, beta-propeller, glycohydrolase; 1.80A {Streptococcus pneumoniae} PDB: 4e8c_A Length = 595 Back     alignment and structure
>2jx9_A Latrophilin 1; lectin, beta-sandwich, disulphide, glycosylated, G-protein C receptor, membrane, receptor, transducer, transmembrane, CE adhesion; HET: NAG; NMR {Mus musculus} PDB: 2jxa_A* Length = 106 Back     alignment and structure
>2zx2_A CSL3; lectin, rhamnose, innate immunity, immune system, sugar binding protein; HET: RAM; 1.80A {Oncorhynchus keta} PDB: 2zx1_A 2zx0_A* 2zx3_A* 2zx4_A* Length = 195 Back     alignment and structure
>2zx2_A CSL3; lectin, rhamnose, innate immunity, immune system, sugar binding protein; HET: RAM; 1.80A {Oncorhynchus keta} PDB: 2zx1_A 2zx0_A* 2zx3_A* 2zx4_A* Length = 195 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query644
4e8d_A595 Glycosyl hydrolase, family 35; TIM barrel, beta-pr 100.0
3d3a_A612 Beta-galactosidase; protein structure initiative I 100.0
3thd_A654 Beta-galactosidase; TIM-barrel domain, glycosyl hy 100.0
1tg7_A971 Beta-galactosidase; TIM barrel domain, glycoside h 100.0
3og2_A1003 Beta-galactosidase; TIM barrel domain, glycoside h 100.0
2jx9_A106 Latrophilin 1; lectin, beta-sandwich, disulphide, 99.9
2zx2_A195 CSL3; lectin, rhamnose, innate immunity, immune sy 99.84
2zx2_A195 CSL3; lectin, rhamnose, innate immunity, immune sy 99.83
3fn9_A 692 Putative beta-galactosidase; structural genomics, 97.21
3lpf_A 605 Beta-glucuronidase; alpha/beta barrel, sugar-bindi 97.12
3gm8_A 801 Glycoside hydrolase family 2, candidate beta-GLYC; 97.09
3hn3_A 613 Beta-G1, beta-glucuronidase; lysosomal enzyme, aci 97.0
3cmg_A 667 Putative beta-galactosidase; structural genomics, 96.92
3bga_A 1010 Beta-galactosidase; NYSGXRC, protein structure ini 96.73
1yq2_A 1024 Beta-galactosidase; glycosyl hydrolase family 2, T 96.41
1jz7_A 1023 Lactase, beta-galactosidase, LACZ; TIM barrel (alp 96.18
2vzs_A 1032 CSXA, EXO-beta-D-glucosaminidase; hydrolase, GH2, 96.17
3oba_A 1032 Beta-galactosidase; TIM barrel, tetramer, GH2, gly 96.15
3fn9_A 692 Putative beta-galactosidase; structural genomics, 95.67
3lpf_A 605 Beta-glucuronidase; alpha/beta barrel, sugar-bindi 95.52
1kwg_A645 Beta-galactosidase; TIM barrel, glycoside hydrolas 95.46
2je8_A 848 Beta-mannosidase; glycoside hydrolase, hydrolase; 95.21
3cmg_A 667 Putative beta-galactosidase; structural genomics, 95.12
3gm8_A 801 Glycoside hydrolase family 2, candidate beta-GLYC; 94.88
3hn3_A 613 Beta-G1, beta-glucuronidase; lysosomal enzyme, aci 94.69
2je8_A 848 Beta-mannosidase; glycoside hydrolase, hydrolase; 94.55
3bga_A 1010 Beta-galactosidase; NYSGXRC, protein structure ini 94.29
3og2_A1003 Beta-galactosidase; TIM barrel domain, glycoside h 94.06
1yq2_A 1024 Beta-galactosidase; glycosyl hydrolase family 2, T 93.77
1jz7_A 1023 Lactase, beta-galactosidase, LACZ; TIM barrel (alp 93.38
3oba_A 1032 Beta-galactosidase; TIM barrel, tetramer, GH2, gly 93.07
1tg7_A971 Beta-galactosidase; TIM barrel domain, glycoside h 93.06
2vzs_A 1032 CSXA, EXO-beta-D-glucosaminidase; hydrolase, GH2, 91.36
2okx_A 956 Rhamnosidase B; alpha barrel, glycoside hydrolase 81.9
3tty_A675 Beta-GAL, beta-galactosidase; TIM barrel, glycosid 81.85
>4e8d_A Glycosyl hydrolase, family 35; TIM barrel, beta-propeller, glycohydrolase; 1.80A {Streptococcus pneumoniae} PDB: 4e8c_A Back     alignment and structure
Probab=100.00  E-value=6.5e-89  Score=761.07  Aligned_cols=385  Identities=26%  Similarity=0.474  Sum_probs=298.2

Q ss_pred             CcccCCCcceEEEecCCC-------CC--cccccccC-cccc-ccc------CCCCCCC-CeeEeeecCccccccCCCCC
Q 006468            1 MAVGLDTGVPWVMCKEDD-------AP--DPVINSCN-GFYC-DAF------SPNKPYK-PTLWTEAWSGWFTEFGGAVH   62 (644)
Q Consensus         1 ~a~~~g~~vP~~~c~~~~-------~~--~~~i~t~n-g~~~-~~f------~~~~p~~-P~~~~E~~~Gwf~~Wg~~~~   62 (644)
                      ||+++||+|||+||++++       +.  +++++||| |..| +.|      .+.+|++ |+|++|||+||||+||++++
T Consensus       173 ~~~~~Gi~vpl~t~d~~~~~~~~~G~~~~~~~~~t~nfg~~~~~~~~~~~~~~~~~p~~~P~~~~Ef~~Gwfd~WG~~~~  252 (595)
T 4e8d_A          173 LMEECGVTCPLFTSDGPWRATLKAGTLIEEDLFVTGNFGSKAPYNFSQMQEFFDEHGKKWPLMCMEFWDGWFNRWKEPII  252 (595)
T ss_dssp             HHHHTTCCSCEEEEECSSHHHHHHHCCGGGTCEEEEEESSCHHHHHHHHHHHHHHTTCCCCCEEEEEECSCCCBTTSCCC
T ss_pred             HHHHcCCcEEEEEccCcchhcccCCccCCCCeEEEeeCCCchhHhHHHHHHhhhcCCCCCCeEEEeeccccccccCCCCC
Confidence            467899999999999975       44  78999999 7776 333      3445888 99999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhCCceeeeeEEeccCCCCCCCCCCc-------ccccccCCCCCCcCCCCCchhHHHHHHHHHHH
Q 006468           63 RRPVQDLAFAVARFIQKGGSFFNYYMYHGGTNFGRTAGGPF-------ITTSYDYDAPLDEYGLMRQPKYGHLKQLHEAI  135 (644)
Q Consensus        63 ~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~G~~~-------~~TSYDy~Apl~E~G~~~~~ky~~lr~~~~~~  135 (644)
                      .+++++++..++++|+.| + +||||||||||||||||+++       ++|||||||||+|+|++ ||||.+||+++..+
T Consensus       253 ~~~~~~~~~~~~~~l~~g-s-~N~YM~hGGTNfG~~~Ga~~~~~~~~p~~TSYDYdApi~E~G~~-t~Ky~~lr~~i~~~  329 (595)
T 4e8d_A          253 TRDPKELADAVREVLEQG-S-INLYMFHGGTNFGFMNGCSARGTLDLPQVTSYDYDALLDEEGNP-TAKYLAVKKMMATH  329 (595)
T ss_dssp             CCCHHHHHHHHHHHHHHS-E-EEEEEEECCBCCTTCBCEEEETTEEEEBCSBCCTTCSBCTTSCB-CHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcC-C-ceEEecccccCcccccCCCCCCCCCCCCCCccCCCCccCcCCCc-cHHHHHHHHHHHHh
Confidence            999999999999999999 6 79999999999999999862       47999999999999999 69999999997643


Q ss_pred             HhhhccccCCCCcccCCCccceeeeeccCCcceeeEeeccCCccceEEEeCCeeeccCCCceeecCCCCceeeccceeee
Q 006468          136 KLCEYALVSSDPTVTSLGTYQQAHVFSAGQQKCAAFLSNYNTKSAARVTFNGRQYNLPPWSISILPDCKNVVFNTAKVAV  215 (644)
Q Consensus       136 ~~~~~~l~~~~p~~~~~~~~~~~~~y~~~~~~~~~Fl~n~~~~~~~~v~~~~~~~~l~~~sv~il~~~~~v~f~t~~v~~  215 (644)
                      .  .+...+. |      ...++..|+                   .|.+..        .+++        |+.     
T Consensus       330 ~--~~~p~~~-P------~~~~~~~~~-------------------~v~l~~--------~~~L--------~~~-----  360 (595)
T 4e8d_A          330 F--SEYPQLE-P------LYKESMELD-------------------AIPLVE--------KVSL--------FET-----  360 (595)
T ss_dssp             C--TTSCCCC-C------CCCCBCCEE-------------------EEEEEE--------EEEH--------HHH-----
T ss_pred             C--CCCCCCC-C------CCCcccccc-------------------eEEecc--------cccH--------HHh-----
Confidence            1  1111110 1      112222222                   111100        0000        111     


Q ss_pred             eeeeeeccccccccccccccccccccccCCCccccccchhhcCCCCCCccEEEEEEEeecCCCcccccCCCCceeeeCCc
Q 006468          216 QHTKMQMLPTGSKLLSWETYDEDISSLGESSTLTAIGLLEQINITRDTSDYLWYMTSVEISSSESFLRGGQKPTLTVESA  295 (644)
Q Consensus       216 ~~~~~~~~~~~~~~~~w~~~~e~~~~~~~~~~~~~~~~~Eql~~t~d~~Gyl~Y~t~i~~~~~~~~~~~g~~~~L~v~~~  295 (644)
                                      ...+.+|+.+.       .|.+||+|+|   .+||+||||++.....        ...|++.++
T Consensus       361 ----------------l~~l~~~~~s~-------~P~~mE~lgq---~~GyvlY~t~i~~~~~--------~~~L~~~~~  406 (595)
T 4e8d_A          361 ----------------LDSLSSPVESL-------YPQKMEELGQ---SYGYLLYRTETNWDAE--------EERLRIIDG  406 (595)
T ss_dssp             ----------------HHHHCCCEEES-------SCCBTGGGTC---CSSEEEEEEEEECSSS--------SEEEEEEEE
T ss_pred             ----------------hhhcCCccccC-------CCCCHHHcCC---CcCeEEEEeccCCCCC--------CceeecCCC
Confidence                            00123455543       4678999998   9999999999975422        247999999


Q ss_pred             ceEEEEEECCEEEEEEEccccCcceEEeecccccCCC-CeEEEEEEecCccccccCC--CccccceeecEEEccccCCCc
Q 006468          296 GHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGI-NKIALLSIAVGLPNVGLHY--ETWETGVRGAVVLHGLDHGNK  372 (644)
Q Consensus       296 ~D~a~Vfvng~~vG~~~~~~~~~~~~~~~~~~l~~g~-~~L~ILven~Gr~N~G~~~--~~~~KGI~G~V~l~g~~~~~~  372 (644)
                      ||||+|||||+++|++++......+.+    ....+. ++|+||||||||||||+.|  ++++|||+|+|+|+++     
T Consensus       407 ~Dra~Vfvdg~~~g~l~r~~~~~~i~~----~~~~~~~~~L~ILVEN~GRvNyG~~~~~~~~~KGi~g~V~l~~~-----  477 (595)
T 4e8d_A          407 RDRAQLYVDGQWVKTQYQTEIGEDIFY----QGKKKGLSRLDILIENMGRVNYGHKFLADTQRKGIRTGVCKDLH-----  477 (595)
T ss_dssp             ESEEEEEETTEEEEEEEGGGTTSCEEE----CCCSSSEEEEEEEEECCCCCCSGGGTTCGGGSCEEEEEEEETTE-----
T ss_pred             ceEEEEEECCEEEEEEEcccCcceEEe----ecCCCCCCEEEEEEEcCCCcccCcccCcCCCCCCCCCCeEECCE-----
Confidence            999999999999999998643232322    233444 7999999999999999988  5799999999999987     


Q ss_pred             cCccCCce-EeccCccccccccCCCCCCCCcccCCCccccccCCceEEEEEEeCCCCCCceEEEeCCCceEEEEECCeee
Q 006468          373 DLTWQKWS-YQVGLKGEAMNLVSPSEATSVDWTRGSLAAQGQQSLKWYKAYFDAPTGNEPLALDLRSMGKGQVWINGQSI  451 (644)
Q Consensus       373 ~L~~~~W~-~~~~l~ge~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~Yr~~F~~p~~~d~~~Ld~~g~gKG~vwVNG~nl  451 (644)
                      .|+  +|+ |.++|+.          ...++|.....    ..+|+||+++|++++..| |||||+||+||+||||||||
T Consensus       478 ~l~--~W~~~~L~l~~----------~~~~~~~~~~~----~~~P~fy~g~f~~~~~~D-TfLd~~gwgKG~v~VNG~nL  540 (595)
T 4e8d_A          478 FLL--NWKHYPLPLDN----------PEKIDFSKGWT----QGQPAFYAYDFTVEEPKD-TYLDLSEFGKGVAFVNGQNL  540 (595)
T ss_dssp             ECC--CEEEEEECCCC----------GGGCCTTSCCC----TTSCEEEEEEEEESSCCB-EEEECTTCCEEEEEETTEEE
T ss_pred             EcC--CcEEEeeccch----------hhhcccccccC----CCCCeEEEEEEEcCCCCC-EEEeCCCCceEEEEECCeee
Confidence            566  799 6887653          11233332211    246899999999977666 99999999999999999999


Q ss_pred             eeeeeccccCCCCCCccCCCcCCccccCCCCCCceeeeecCcccccCCcceEEEEEecCCCCcceEEEeecc
Q 006468          452 GRYWMAYAKGDCKTCSYAGTFRPINCQRRCGHPTQRWYHVPRSWLKPTKNLLVVFEELGGDASRISLVKRSV  523 (644)
Q Consensus       452 GRYW~~~~~g~~~~~~~~G~~~~~~~~~~~~~PQqtlY~VP~~~Lk~g~N~ivvfE~~g~~~~~i~l~~~~~  523 (644)
                      ||||+            +|             |||||| ||++|||+|+|+|||||+++.....|+|++.++
T Consensus       541 GRYW~------------~G-------------PQ~tLY-vP~~~Lk~G~NeIvvfEl~~~~~~~i~~~~~p~  586 (595)
T 4e8d_A          541 GRFWN------------VG-------------PTLSLY-IPHSYLKEGANRIIIFETEGQYKEEIHLTRKPT  586 (595)
T ss_dssp             EEEET------------TC-------------SBCEEE-ECGGGSCSEEEEEEEEESSSCCCSEEEEESSCC
T ss_pred             ecccC------------CC-------------CeEEEE-ecHHHhCcCCceEEEEEecCCCCceEEeecccc
Confidence            99993            57             999999 999999999999999999987778899988864
>3d3a_A Beta-galactosidase; protein structure initiative II, PSI II, NYSGXRC, 11092F, structural genomics; 2.15A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>3thd_A Beta-galactosidase; TIM-barrel domain, glycosyl hydrolase, glycosylation, hydrolase; HET: NAG DGJ; 1.79A {Homo sapiens} PDB: 3thc_A* Back     alignment and structure
>1tg7_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family GH35, glycopr penicillium, hydrolase; HET: NAG BMA MAN; 1.90A {Penicillium SP} SCOP: b.149.1.1 b.18.1.27 b.18.1.27 b.71.1.5 c.1.8.14 PDB: 1xc6_A* Back     alignment and structure
>3og2_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family 35, glycoprot hydrolase; HET: NAG BMA MAN GLC; 1.20A {Trichoderma reesei} PDB: 3ogr_A* 3ogs_A* 3ogv_A* Back     alignment and structure
>2jx9_A Latrophilin 1; lectin, beta-sandwich, disulphide, glycosylated, G-protein C receptor, membrane, receptor, transducer, transmembrane, CE adhesion; HET: NAG; NMR {Mus musculus} PDB: 2jxa_A* Back     alignment and structure
>2zx2_A CSL3; lectin, rhamnose, innate immunity, immune system, sugar binding protein; HET: RAM; 1.80A {Oncorhynchus keta} PDB: 2zx1_A 2zx0_A* 2zx3_A* 2zx4_A* Back     alignment and structure
>2zx2_A CSL3; lectin, rhamnose, innate immunity, immune system, sugar binding protein; HET: RAM; 1.80A {Oncorhynchus keta} PDB: 2zx1_A 2zx0_A* 2zx3_A* 2zx4_A* Back     alignment and structure
>3fn9_A Putative beta-galactosidase; structural genomics, glycosidas hydrolase, PSI-2, protein structure initiative; 2.70A {Bacteroides fragilis} Back     alignment and structure
>3lpf_A Beta-glucuronidase; alpha/beta barrel, sugar-binding domain, beta-sandwich domai glycosyl hydrolase, glycosida hydrolase; HET: Z77; 2.26A {Escherichia coli} PDB: 3k46_A* 3k4d_A* 3lpg_A* 3k4a_A Back     alignment and structure
>3gm8_A Glycoside hydrolase family 2, candidate beta-GLYC; structural genomics, glycosidase, PSI-2, protein initiative; 2.40A {Bacteroides vulgatus} Back     alignment and structure
>3hn3_A Beta-G1, beta-glucuronidase; lysosomal enzyme, acid hydrolase, glycosidase, disease mutat glycoprotein, hydrolase, lysosome, mucopolysaccharidosis; HET: NDG NAG BMA MAN GUP; 1.70A {Homo sapiens} PDB: 1bhg_A* Back     alignment and structure
>3cmg_A Putative beta-galactosidase; structural genomics, PSI-2, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 1.90A {Bacteroides fragilis} Back     alignment and structure
>3bga_A Beta-galactosidase; NYSGXRC, protein structure initiative II (PSI-II), glycosyl hydrolase family 2, jelly-roll fold; 2.10A {Bacteroides thetaiotaomicron vpi-5482} PDB: 3dec_A Back     alignment and structure
>1yq2_A Beta-galactosidase; glycosyl hydrolase family 2, TIM barrel, hexamer; 1.90A {Arthrobacter SP} SCOP: b.1.4.1 b.1.4.1 b.18.1.5 b.30.5.1 c.1.8.3 Back     alignment and structure
>1jz7_A Lactase, beta-galactosidase, LACZ; TIM barrel (alpha/beta barrel), jelly-roll barrel, immunoglobulin, beta supersandwich, hydrolase; HET: GAL; 1.50A {Escherichia coli} SCOP: b.1.4.1 b.1.4.1 b.18.1.5 b.30.5.1 c.1.8.3 PDB: 1hn1_A 1jyx_A* 1jz3_A* 1jz4_A* 1jz5_A* 1jz6_A* 1dp0_A* 3iap_A* 1jz8_A* 1jyn_A* 1jyv_A* 1jyw_A* 3iaq_A* 1px3_A 1px4_A* 3czj_A* 3i3e_A 3i3d_A* 3i3b_A 3dym_A ... Back     alignment and structure
>2vzs_A CSXA, EXO-beta-D-glucosaminidase; hydrolase, GH2, glucosamine, glycoside hydrolase; HET: GCS; 1.85A {Amycolatopsis orientalis} SCOP: b.1.4.1 b.1.4.1 b.1.4.1 b.18.1.5 c.1.8.3 PDB: 2x05_A* 2x09_A* 2vzo_A 2vzt_A* 2vzv_A* 2vzu_A* Back     alignment and structure
>3oba_A Beta-galactosidase; TIM barrel, tetramer, GH2, glycosidase, hydrolase; 2.75A {Kluyveromyces lactis} PDB: 3ob8_A Back     alignment and structure
>3fn9_A Putative beta-galactosidase; structural genomics, glycosidas hydrolase, PSI-2, protein structure initiative; 2.70A {Bacteroides fragilis} Back     alignment and structure
>3lpf_A Beta-glucuronidase; alpha/beta barrel, sugar-binding domain, beta-sandwich domai glycosyl hydrolase, glycosida hydrolase; HET: Z77; 2.26A {Escherichia coli} PDB: 3k46_A* 3k4d_A* 3lpg_A* 3k4a_A Back     alignment and structure
>1kwg_A Beta-galactosidase; TIM barrel, glycoside hydrolase family 42, trimer, hydrolase; 1.60A {Thermus thermophilus} SCOP: b.71.1.1 c.1.8.1 c.23.16.5 PDB: 1kwk_A* Back     alignment and structure
>2je8_A Beta-mannosidase; glycoside hydrolase, hydrolase; HET: B3P; 1.7A {Bacteroides thetaiotaomicron} SCOP: b.1.4.1 b.1.4.1 b.1.4.1 b.18.1.5 c.1.8.3 PDB: 2vr4_A* 2vl4_A* 2vmf_A* 2vo5_A* 2vot_A* 2vqt_A* 2vjx_A* 2vqu_A* 2wbk_A* Back     alignment and structure
>3cmg_A Putative beta-galactosidase; structural genomics, PSI-2, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 1.90A {Bacteroides fragilis} Back     alignment and structure
>3gm8_A Glycoside hydrolase family 2, candidate beta-GLYC; structural genomics, glycosidase, PSI-2, protein initiative; 2.40A {Bacteroides vulgatus} Back     alignment and structure
>3hn3_A Beta-G1, beta-glucuronidase; lysosomal enzyme, acid hydrolase, glycosidase, disease mutat glycoprotein, hydrolase, lysosome, mucopolysaccharidosis; HET: NDG NAG BMA MAN GUP; 1.70A {Homo sapiens} PDB: 1bhg_A* Back     alignment and structure
>2je8_A Beta-mannosidase; glycoside hydrolase, hydrolase; HET: B3P; 1.7A {Bacteroides thetaiotaomicron} SCOP: b.1.4.1 b.1.4.1 b.1.4.1 b.18.1.5 c.1.8.3 PDB: 2vr4_A* 2vl4_A* 2vmf_A* 2vo5_A* 2vot_A* 2vqt_A* 2vjx_A* 2vqu_A* 2wbk_A* Back     alignment and structure
>3bga_A Beta-galactosidase; NYSGXRC, protein structure initiative II (PSI-II), glycosyl hydrolase family 2, jelly-roll fold; 2.10A {Bacteroides thetaiotaomicron vpi-5482} PDB: 3dec_A Back     alignment and structure
>3og2_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family 35, glycoprot hydrolase; HET: NAG BMA MAN GLC; 1.20A {Trichoderma reesei} PDB: 3ogr_A* 3ogs_A* 3ogv_A* Back     alignment and structure
>1yq2_A Beta-galactosidase; glycosyl hydrolase family 2, TIM barrel, hexamer; 1.90A {Arthrobacter SP} SCOP: b.1.4.1 b.1.4.1 b.18.1.5 b.30.5.1 c.1.8.3 Back     alignment and structure
>1jz7_A Lactase, beta-galactosidase, LACZ; TIM barrel (alpha/beta barrel), jelly-roll barrel, immunoglobulin, beta supersandwich, hydrolase; HET: GAL; 1.50A {Escherichia coli} SCOP: b.1.4.1 b.1.4.1 b.18.1.5 b.30.5.1 c.1.8.3 PDB: 1hn1_A 1jyx_A* 1jz3_A* 1jz4_A* 1jz5_A* 1jz6_A* 1dp0_A* 3iap_A* 1jz8_A* 1jyn_A* 1jyv_A* 1jyw_A* 3iaq_A* 1px3_A 1px4_A* 3czj_A* 3i3e_A 3i3d_A* 3i3b_A 3dym_A ... Back     alignment and structure
>3oba_A Beta-galactosidase; TIM barrel, tetramer, GH2, glycosidase, hydrolase; 2.75A {Kluyveromyces lactis} PDB: 3ob8_A Back     alignment and structure
>1tg7_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family GH35, glycopr penicillium, hydrolase; HET: NAG BMA MAN; 1.90A {Penicillium SP} SCOP: b.149.1.1 b.18.1.27 b.18.1.27 b.71.1.5 c.1.8.14 PDB: 1xc6_A* Back     alignment and structure
>2vzs_A CSXA, EXO-beta-D-glucosaminidase; hydrolase, GH2, glucosamine, glycoside hydrolase; HET: GCS; 1.85A {Amycolatopsis orientalis} SCOP: b.1.4.1 b.1.4.1 b.1.4.1 b.18.1.5 c.1.8.3 PDB: 2x05_A* 2x09_A* 2vzo_A 2vzt_A* 2vzv_A* 2vzu_A* Back     alignment and structure
>2okx_A Rhamnosidase B; alpha barrel, glycoside hydrolase family 78, I hydrolase; 1.90A {Bacillus SP} Back     alignment and structure
>3tty_A Beta-GAL, beta-galactosidase; TIM barrel, glycoside hydrolase, hydrolase; HET: GLA; 2.25A {Bacillus circulans subsp} PDB: 3tts_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 644
d1tg7a5354 c.1.8.14 (A:41-394) Beta-galactosidase LacA, N-ter 9e-38
>d1tg7a5 c.1.8.14 (A:41-394) Beta-galactosidase LacA, N-terminal domain {Penicillium sp. [TaxId: 5081]} Length = 354 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Glycosyl hydrolases family 35 catalytic domain
domain: Beta-galactosidase LacA, N-terminal domain
species: Penicillium sp. [TaxId: 5081]

 Score =  141 bits (356), Expect = 9e-38
 Identities = 40/171 (23%), Positives = 57/171 (33%), Gaps = 35/171 (20%)

Query: 1   MAVGLDTGVPWVMC----KEDDAPDPVINSCNGFYCDAFSP------------------- 37
            A      VP++         +AP     + + +  D++                     
Sbjct: 183 HARDAGIVVPFISNDAWAAGHNAPGTGAGAVDIYGHDSYPLGFDCANPSTWPSGNLPTYF 242

Query: 38  ------NKPYKPTLWTEAWSGWFTEFGGAVHRRPVQDLAFAVARFIQK-----GGSFFNY 86
                   P  P    E   G F  +GG    +    L     R   K     G +F N 
Sbjct: 243 HTSHEQQSPSTPYSLVEFQGGAFDPWGGVGFAKCAALLNHEFERVFYKNDFSFGVAFLNL 302

Query: 87  YMYHGGTNFGRTAGGPFITTSYDYDAPLDEYGLMRQPKYGHLKQLHEAIKL 137
           YM  GGTN+G   G P   TSYDY + + E   + + KY  LK L    K+
Sbjct: 303 YMIFGGTNWGNL-GHPGGYTSYDYGSAISESRNITREKYSELKLLGNFAKV 352

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query644
d1tg7a5354 Beta-galactosidase LacA, N-terminal domain {Penici 99.86
d1tg7a3163 Beta-galactosidase LacA, domains 4 and 5 {Penicill 99.5
d1tg7a2182 Beta-galactosidase LacA, domains 4 and 5 {Penicill 98.82
d1bhga2204 beta-Glucuronidase {Human (Homo sapiens) [TaxId: 9 97.7
d1jz8a3207 beta-Galactosidase {Escherichia coli [TaxId: 562]} 97.66
d2vzsa4184 Exochitosanase CsxA {Amycolatopsis orientalis [Tax 97.53
d1yq2a3216 beta-Galactosidase {Arthrobacter sp. c2-2 [TaxId: 97.49
d2je8a4192 Beta-mannosidase {Bacteroides thetaiotaomicron [Ta 97.26
d2vzsa4184 Exochitosanase CsxA {Amycolatopsis orientalis [Tax 97.03
d1tg7a2182 Beta-galactosidase LacA, domains 4 and 5 {Penicill 96.68
d1yq2a3216 beta-Galactosidase {Arthrobacter sp. c2-2 [TaxId: 96.13
d1bhga2204 beta-Glucuronidase {Human (Homo sapiens) [TaxId: 9 96.11
d1jz8a3207 beta-Galactosidase {Escherichia coli [TaxId: 562]} 95.94
d2je8a4192 Beta-mannosidase {Bacteroides thetaiotaomicron [Ta 95.87
>d1tg7a5 c.1.8.14 (A:41-394) Beta-galactosidase LacA, N-terminal domain {Penicillium sp. [TaxId: 5081]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Glycosyl hydrolases family 35 catalytic domain
domain: Beta-galactosidase LacA, N-terminal domain
species: Penicillium sp. [TaxId: 5081]

Probab=99.86  E-value=4.1e-23  Score=218.45  Aligned_cols=135  Identities=30%  Similarity=0.421  Sum_probs=100.9

Q ss_pred             cccCCCcceEEEecCCC----CCccccccc---------Ccccccc----------------cCCCCCCCCeeEeeecCc
Q 006468            2 AVGLDTGVPWVMCKEDD----APDPVINSC---------NGFYCDA----------------FSPNKPYKPTLWTEAWSG   52 (644)
Q Consensus         2 a~~~g~~vP~~~c~~~~----~~~~~i~t~---------ng~~~~~----------------f~~~~p~~P~~~~E~~~G   52 (644)
                      |++.++++|+++|+.+.    ..+.++...         +++.+..                +...+|.+|++++|||+|
T Consensus       184 ~~~~~~~~p~~~~~~~~~~~~~~g~~~~~~d~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~E~~~g  263 (354)
T d1tg7a5         184 ARDAGIVVPFISNDAWAAGHNAPGTGAGAVDIYGHDSYPLGFDCANPSTWPSGNLPTYFHTSHEQQSPSTPYSLVEFQGG  263 (354)
T ss_dssp             HHHTTCCSCBBCCBSSSSCTTCTTSCTTCCSBCEEEECTTCSCCSCTTCCCTTCSCCCHHHHHHHHCTTSCCEEEEEESS
T ss_pred             hhccCcccceEeccchhhccCCCCcccccccccccccCCCccccCCcccccccccchHHHHHHhhcCCccceeeeccccc
Confidence            57789999999998753    111112111         1222211                113568999999999999


Q ss_pred             cccccCCCCCCCCHHHHHHHHHHH-----HHhCCceeeeeEEeccCCCCCCCCCCcccccccCCCCCCcCCCCCchhHHH
Q 006468           53 WFTEFGGAVHRRPVQDLAFAVARF-----IQKGGSFFNYYMYHGGTNFGRTAGGPFITTSYDYDAPLDEYGLMRQPKYGH  127 (644)
Q Consensus        53 wf~~Wg~~~~~~~~~~~~~~~~~~-----l~~g~s~~n~YM~hGGTNfG~~~G~~~~~TSYDy~Apl~E~G~~~~~ky~~  127 (644)
                      |+++||++...+++++++..+.++     ++.|+..+||||||||||||+++ ++..+|||||+|||+|+|+++.++|.+
T Consensus       264 ~~~~wG~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~YM~~GGTnfG~~~-~~~~~tsYdy~api~e~G~~~~~yy~~  342 (354)
T d1tg7a5         264 AFDPWGGVGFAKCAALLNHEFERVFYKNDFSFGVAFLNLYMIFGGTNWGNLG-HPGGYTSYDYGSAISESRNITREKYSE  342 (354)
T ss_dssp             CCCCTTCCCHHHHHHHTSHHHHHHHHHHHHTTTCSEEEEECSBCCBCCTTCB-CTTSCSBCCTTCSBCTTCCCCSHHHHH
T ss_pred             cccccCCCccccCHHHHHHHHHHHHHhhhhhccccceEEeEEecccCCCCCC-CCCCCCCCCCCCeECcCCCCCHHHHHH
Confidence            999999988777776666555444     45688889999999999999994 566899999999999999994346678


Q ss_pred             HHHHHHHHHh
Q 006468          128 LKQLHEAIKL  137 (644)
Q Consensus       128 lr~~~~~~~~  137 (644)
                      +|.|++||+.
T Consensus       343 ~k~l~~~~~~  352 (354)
T d1tg7a5         343 LKLLGNFAKV  352 (354)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHhcc
Confidence            9999999863
>d1tg7a3 b.18.1.27 (A:849-1011) Beta-galactosidase LacA, domains 4 and 5 {Penicillium sp. [TaxId: 5081]} Back     information, alignment and structure
>d1tg7a2 b.18.1.27 (A:667-848) Beta-galactosidase LacA, domains 4 and 5 {Penicillium sp. [TaxId: 5081]} Back     information, alignment and structure
>d1bhga2 b.18.1.5 (A:22-225) beta-Glucuronidase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jz8a3 b.18.1.5 (A:13-219) beta-Galactosidase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2vzsa4 b.18.1.5 (A:42-225) Exochitosanase CsxA {Amycolatopsis orientalis [TaxId: 31958]} Back     information, alignment and structure
>d1yq2a3 b.18.1.5 (A:4-219) beta-Galactosidase {Arthrobacter sp. c2-2 [TaxId: 192168]} Back     information, alignment and structure
>d2je8a4 b.18.1.5 (A:28-219) Beta-mannosidase {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d2vzsa4 b.18.1.5 (A:42-225) Exochitosanase CsxA {Amycolatopsis orientalis [TaxId: 31958]} Back     information, alignment and structure
>d1tg7a2 b.18.1.27 (A:667-848) Beta-galactosidase LacA, domains 4 and 5 {Penicillium sp. [TaxId: 5081]} Back     information, alignment and structure
>d1yq2a3 b.18.1.5 (A:4-219) beta-Galactosidase {Arthrobacter sp. c2-2 [TaxId: 192168]} Back     information, alignment and structure
>d1bhga2 b.18.1.5 (A:22-225) beta-Glucuronidase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jz8a3 b.18.1.5 (A:13-219) beta-Galactosidase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2je8a4 b.18.1.5 (A:28-219) Beta-mannosidase {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure