Citrus Sinensis ID: 006475

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640---

MLLLPHFSTKPHLLFSSLSSSSSSLRPRLPKFPFYPAYFTKSPSCPSIACHVSTTGGGGAAQMESSASVDSVTHDLKNQRLDTETETDGGDESKMTKKLKALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRFGSYQIHASRGQEDLDIVRTLADYAIRHHFRHIENMNKSESLSFSTGDEDHSVVDLTSNKYAAWAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLTIDYGPFGFLDAFDPSFTPNTTDLPGRRYCFANQPDIGLWNIAQFSTTLAAAKLIDDKEANYVMERYGTKFMDEYQAIMTKKLGLPKYNKQIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWAYRPGVCMLSCSS

ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccEEEEEcHHHHHHcccccccccccccccccccccccccccHHHHHHcccccccccccccHHHHHHHHEEEcccccEEEEEEcccccccccccccccccccHHHHHHHHHHHHccccccHHHHccEEEcccEEEEccccccccccccccEEEEEccccccccHHHHHHHcccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccEEcccHHHHHHHHHHHcccHHHHHHHHHHHHccccccccccccccccccccccccEEEEcccc

ccccccccccccEEEccccccHHccccccccccccccccccccccccEEEEEccccccccccccccccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHccccccHHHHHcccccccccccccccccHEccccccccccccEEEEEcHHHHHHHcccHHHHccHHHHHHHcccccccccccHHEEEccccccccccccccccEEEEEEEEcccccEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHccccccEEEEEEEccccEEEEEEccccccccccEEEEEEcccEEEEccEEHEEccccccHHHHHHHHHHHHHHHcHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccEcccEcccccEEEEEEEcccccccccccccccccccccccccEEEcccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccHHHHHHHHHccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccHccccHHHHHcccccHccccccEEEEccc

mlllphfstkphllfsslsssssslrprlpkfpfypayftkspscpsiachvsttggggaaqmessasvdsvthdlknqrldtetetdggdeskmTKKLKALEdlnwdhsfvrelpgdprtdsipreVLHACytkvspsaevenpqlvAWSESVAdsleldpkeferpdfplffsgatplagavpyaqcygghqfgmwagqlgdgraITLGEILNLKSERWELQlkgagktpysrfADGLAVLRSSIREFLCSEamhflgiptTRALCLVTtgkfvtrdmfydgnpkeepgaIVCRVAQSFLrfgsyqihasrgqedLDIVRTLADYAIRHHFRhienmnkseslsfstgdedhsvvdltsnKYAAWAVEVAERTASLVAQWqgvgfthgvlntdnmsilgltidygpfgfldafdpsftpnttdlpgrrycfanqpdiglwniaQFSTTLAAAKLIDDKEANYVMERYGTKFMDEYQAIMTkklglpkyNKQIISKLLNnmavdkvdYTNFFRAlsnvkadpsipedellvPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALmnsvnpkyVLRNYLCQSaidaaelgdfGEVRRLLKLMerpydeqpgmekyarlppawayrpgvcmlscss

mlllphfstkphlLFSSlsssssslrpRLPKFPFYPAYFTKSPSCPSIACHVSTTGGGGAAQMESSASVDsvthdlknqrldtetetdggdeskmtKKLKAledlnwdhsfvrelpgdprtdsiprEVLHACYTKVspsaevenpqlVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLkgagktpysrFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRFGSYQIhasrgqedldIVRTLADYAIRHHFRHIENMNKSESLSFSTGDEDHSVVDLTSNKYAAWAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLTIDYGPFGFLDAFDPSFTPNTTDLPGRRYCFANQPDIGLWNIAQFSTTLAAAKLIDDKEANYVMERYGTKFMDEYQAIMTKKLGLPKYNKQIISKLLNNMAVDKVDYTNFFRALSNVkadpsipedellVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMErpydeqpgmekyarlppawayrpgvcmlscss

MLLLPHFSTKPHllfsslsssssslRPRLPKFPFYPAYFTKSPSCPSIACHVSTTGGGGAAQMESSASVDSVTHDLKNQRLDTETETDGGDESKMTKKLKALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRFGSYQIHASRGQEDLDIVRTLADYAIRHHFRHIENMNKSESLSFSTGDEDHSVVDLTSNKYAAWAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLTIDYGPFGFLDAFDPSFTPNTTDLPGRRYCFANQPDIGLWNIAQFSTTLAAAKLIDDKEANYVMERYGTKFMDEYQAIMTKKLGLPKYNKQIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWAYRPGVCMLSCSS

******************************KFPFYPAYFTKSPSCPSIACHV****************************************************LNWDHSFVR************REVLHACYTKV*********QLVAWS*************FERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRFGSYQIHASRGQEDLDIVRTLADYAIRHHFRHIE*****************SVVDLTSNKYAAWAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLTIDYGPFGFLDAFDPSFTPNTTDLPGRRYCFANQPDIGLWNIAQFSTTLAAAKLIDDKEANYVMERYGTKFMDEYQAIMTKKLGLPKYNKQIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISD**RKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPY*****MEKYARLPPAWAYRPGVCML****

*******STKPHLLFSSLSSSSSSLRPRLPKFPFYPAYFTKSPSCPSIACHV***************************************************DLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRFGSYQIHASRGQEDLDIVRTLADYAIRHHFRHIENMNKSESLSFSTGDEDHSVVDLTSNKYAAWAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLTIDYGPFGFLDAFDPSFTPNTTDLPGRRYCFANQPDIGLWNIAQFSTTLAAAKLIDDKEANYVMERYGTKFMDEYQAIMTKKLGLPKYNKQIISKLLNNMAVDKVDYTNFFRALSNVKA*****E**LLVPLKAVLLDIGKERKEAWISWVLSYIQELLS*********ALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWAYRPGVCMLSCSS

MLLLPHFSTKPHLLFSS********RPRLPKFPFYPAYFTKSPSCPSIACHVST*******************HDLKNQR*************KMTKKLKALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRFGSYQIHASRGQEDLDIVRTLADYAIRHHFRHIENMNKSESLSFSTGDEDHSVVDLTSNKYAAWAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLTIDYGPFGFLDAFDPSFTPNTTDLPGRRYCFANQPDIGLWNIAQFSTTLAAAKLIDDKEANYVMERYGTKFMDEYQAIMTKKLGLPKYNKQIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWAYRPGVCMLSCSS

*LLLPHFSTKPHLLFSSL****SSLRPRLPKFPFYPAYFTKSPSCPSIACHVS**************************RLDTET*TDGGDESKMTKKLKALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRFGSYQIHASRGQEDLDIVRTLADYAIRHHFRHIENM******************DLTSNKYAAWAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLTIDYGPFGFLDAFDPSFTPNTTDLPGRRYCFANQPDIGLWNIAQFSTTLAAAKLIDDKEANYVMERYGTKFMDEYQAIMTKKLGLPKYNKQIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWAYRPGVCMLSCS*

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		643	2.2.26 [Sep-21-2011]
A1K5T6		519	UPF0061 protein azo1574 O	yes	no	0.796	0.986	0.502	1e-137
Q5NYD9		523	UPF0061 protein AZOSEA380	yes	no	0.790	0.971	0.477	1e-136
Q1H0D2		518	UPF0061 protein Mfla_1788	yes	no	0.788	0.978	0.477	1e-134
Q7UKT5		540	UPF0061 protein RB9953 OS	yes	no	0.805	0.959	0.459	1e-133
C4LAV8		519	UPF0061 protein Tola_0683	yes	no	0.794	0.984	0.479	1e-133
C1AED7		522	UPF0061 protein GAU_3822	yes	no	0.802	0.988	0.461	1e-129
Q2Y8V8		565	UPF0061 protein Nmul_A151	yes	no	0.805	0.916	0.455	1e-129
B0RS12		518	UPF0061 protein xcc-b100_	yes	no	0.785	0.974	0.462	1e-124
Q8P8F8		518	UPF0061 protein XCC2284 O	yes	no	0.785	0.974	0.462	1e-124
Q4UVM9		518	UPF0061 protein XC_1831 O	yes	no	0.785	0.974	0.462	1e-124

>sp\|A1K5T6\|Y1574_AZOSB UPF0061 protein azo1574 OS=Azoarcus sp. (strain BH72) GN=azo1574 PE=3 SV=1	Back alignment and function desciption

 Score =  488 bits (1255), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 276/549 (50%), Positives = 336/549 (61%), Gaps = 37/549 (6%)

Query: 102 LEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELD 161
           +  L +D+ FVRELP DP T    R+V  A Y++V+P+  V  P LVA S  VA  L  D
Sbjct: 1   MRPLVFDNRFVRELPADPETGPHTRQVAGASYSRVNPT-PVAAPHLVAHSAEVAALLGWD 59

Query: 162 PKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERW 221
             +   P+F   F G   L G  PYA CYGGHQFG WAGQLGDGRAITLGE+LN +  RW
Sbjct: 60  ESDIASPEFAEVFGGNRLLDGMEPYAACYGGHQFGNWAGQLGDGRAITLGEVLNGQGGRW 119

Query: 222 ELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMF 281
           ELQLKGAG TPYSR ADG AVLRSSIREFLCSEAMH LG+PTTRAL LV TG+ V RDMF
Sbjct: 120 ELQLKGAGPTPYSRRADGRAVLRSSIREFLCSEAMHHLGVPTTRALSLVGTGEKVVRDMF 179

Query: 282 YDGNPKEEPGAIVCRVAQSFLRFGSYQIHASRGQEDLDIVRTLADYAIRHHFRHIENMNK 341
           YDGNP+ EPGAIVCRVA SF+RFG++++ A+RG  DLD++  L D+ I   F  IE   +
Sbjct: 180 YDGNPQAEPGAIVCRVAPSFIRFGNFELLAARG--DLDLLNRLIDFTIARDFPGIEGSAR 237

Query: 342 SESLSFSTGDEDHSVVDLTSNKYAAWAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILG 401
                               +K A W   V  RTA++VA W  VGF HGV+NTDNMSILG
Sbjct: 238 --------------------DKRARWFETVCARTATMVAHWMRVGFVHGVMNTDNMSILG 277

Query: 402 LTIDYGPFGFLDAFDPSFTPNTTDLPGRRYCFANQPDIGLWNIAQFSTTLAAAKLIDDKE 461
           LTIDYGP+G++D FDP +TPNTTD  GRRY F +QP I  WN+ Q +  L  A     + 
Sbjct: 278 LTIDYGPYGWVDNFDPGWTPNTTDAGGRRYRFGHQPRIANWNLLQLANALFPA-FGSTEA 336

Query: 462 ANYVMERYGTKFMDEYQAIMTKKLGLPKYNKQ---IISKLLNNMAVDKVDYTNFFRALSN 518
               +  Y   +  E +A+   KLGL         ++  L   M   +VD T FFRAL+ 
Sbjct: 337 LQAGLNTYAEVYDRESRAMTAAKLGLAALADADLPMVDALHGWMKRAEVDMTLFFRALAE 396

Query: 519 V---KADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMN 575
           V   K DP++  D      K +      E  E +  W+  Y       G+  ++R+A MN
Sbjct: 397 VDLLKPDPALFLDAFYDDAKRL------ETAEEFSGWLRLYADRCRQEGLDADQRRARMN 450

Query: 576 SVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWAY-RP 634
           + NP+YV+RNYL Q AIDAAE GD+G VR LL +M RPYDEQP    YA+  P WA  R 
Sbjct: 451 AANPRYVMRNYLAQQAIDAAEQGDYGPVRSLLDVMRRPYDEQPERAAYAQRRPDWARERA 510

Query: 635 GVCMLSCSS 643
           G  MLSCSS
Sbjct: 511 GCSMLSCSS 519

Azoarcus sp. (strain BH72) (taxid: 62928)

>sp\|Q5NYD9\|Y3800_AROAE UPF0061 protein AZOSEA38000 OS=Aromatoleum aromaticum (strain EbN1) GN=AZOSEA38000 PE=3 SV=1	Back alignment and function description

>sp\|Q1H0D2\|Y1788_METFK UPF0061 protein Mfla_1788 OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=Mfla_1788 PE=3 SV=1	Back alignment and function description

>sp\|Q7UKT5\|Y9953_RHOBA UPF0061 protein RB9953 OS=Rhodopirellula baltica (strain SH1) GN=RB9953 PE=3 SV=1	Back alignment and function description

>sp\|C4LAV8\|Y683_TOLAT UPF0061 protein Tola_0683 OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=Tola_0683 PE=3 SV=1	Back alignment and function description

>sp\|C1AED7\|Y3822_GEMAT UPF0061 protein GAU_3822 OS=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) GN=GAU_3822 PE=3 SV=1	Back alignment and function description

>sp\|Q2Y8V8\|Y1510_NITMU UPF0061 protein Nmul_A1510 OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=Nmul_A1510 PE=3 SV=1	Back alignment and function description

>sp\|B0RS12\|Y1894_XANCB UPF0061 protein xcc-b100_1894 OS=Xanthomonas campestris pv. campestris (strain B100) GN=xcc-b100_1894 PE=3 SV=1	Back alignment and function description

>sp\|Q8P8F8\|Y2284_XANCP UPF0061 protein XCC2284 OS=Xanthomonas campestris pv. campestris (strain ATCC 33913 / NCPPB 528 / LMG 568) GN=XCC2284 PE=3 SV=1	Back alignment and function description

>sp\|Q4UVM9\|Y1831_XANC8 UPF0061 protein XC_1831 OS=Xanthomonas campestris pv. campestris (strain 8004) GN=XC_1831 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		643
224053020		646	predicted protein [Populus trichocarpa]	0.947	0.942	0.807	0.0
297746392		672	unnamed protein product [Vitis vinifera]	0.964	0.922	0.796	0.0
225435594		651	PREDICTED: UPF0061 protein AZOSEA38000-l	0.964	0.952	0.796	0.0
449462599		649	PREDICTED: UPF0061 protein AZOSEA38000-l	0.944	0.935	0.825	0.0
255544744		654	Selenoprotein O, putative [Ricinus commu	0.953	0.937	0.793	0.0
13430492		585	unknown protein [Arabidopsis thaliana]	0.888	0.976	0.813	0.0
356576911		590	PREDICTED: UPF0061 protein AZOSEA38000-l	0.842	0.918	0.859	0.0
51971098		630	unnamed protein product [Arabidopsis tha	0.888	0.906	0.813	0.0
30684227		633	uncharacterized protein [Arabidopsis tha	0.888	0.902	0.813	0.0
51971224		632	unnamed protein product [Arabidopsis tha	0.888	0.903	0.813	0.0

>gi\|224053020\|ref\|XP_002297667.1\| predicted protein [Populus trichocarpa] gi\|222844925\|gb\|EEE82472.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score = 1064 bits (2752), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 517/640 (80%), Positives = 557/640 (87%), Gaps = 31/640 (4%)

Query: 26  RPRLP-KFPFYPAYFTKSPSCP----------SIACHVSTTG-----------GGGAAQM 63
           RP LP KFPFYP  F KS  CP          S++ HVST+               ++  
Sbjct: 16  RPFLPIKFPFYPPPFVKSQFCPLSPPAHLFKPSLSRHVSTSSFPSSRGRGSSVSMESSSP 75

Query: 64  ESSASVDSVTHDLKNQRLDTETETDGGDESKMTKKLKALEDLNWDHSFVRELPGDPRTDS 123
           E + S+DSVT DLKNQ L        G +     KLK LEDLNWDHSFVR LPGDPR D+
Sbjct: 76  EPTVSLDSVTQDLKNQTL--------GPDDVSKAKLK-LEDLNWDHSFVRALPGDPRADT 126

Query: 124 IPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGA 183
           IPR+V+HACYTKV PSAEVENP+LVAWS+SVAD  +LDPKEFERPDFPL FSGA+PL GA
Sbjct: 127 IPRQVMHACYTKVLPSAEVENPELVAWSDSVADLFDLDPKEFERPDFPLLFSGASPLVGA 186

Query: 184 VPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVL 243
           +PYAQCYGGHQFGMWAGQLGDGRAITLGE++N KSERWELQLKG+G+TPYSRFADGLAVL
Sbjct: 187 LPYAQCYGGHQFGMWAGQLGDGRAITLGEVVNSKSERWELQLKGSGRTPYSRFADGLAVL 246

Query: 244 RSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLR 303
           RSSIREFLCSEAMH LGIPTTRAL LVTTGK+VTRDMFYDGN KEEPGAIVCRVA SFLR
Sbjct: 247 RSSIREFLCSEAMHCLGIPTTRALSLVTTGKYVTRDMFYDGNAKEEPGAIVCRVAPSFLR 306

Query: 304 FGSYQIHASRGQEDLDIVRTLADYAIRHHFRHIENMNKSESLSFSTGDEDHSVVDLTSNK 363
           FGSYQIHASRG+EDL+IVR LADYAIRHHF HIENMNKSESLSFSTGDEDHSVVDLTSNK
Sbjct: 307 FGSYQIHASRGKEDLEIVRALADYAIRHHFPHIENMNKSESLSFSTGDEDHSVVDLTSNK 366

Query: 364 YAAWAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLTIDYGPFGFLDAFDPSFTPNT 423
           YAAW VE+AERTAS++A WQGVGFTHGV+NTDNMSILGLTIDYGPFGFLDAFDPSFTPNT
Sbjct: 367 YAAWTVEIAERTASMIASWQGVGFTHGVMNTDNMSILGLTIDYGPFGFLDAFDPSFTPNT 426

Query: 424 TDLPGRRYCFANQPDIGLWNIAQFSTTLAAAKLIDDKEANYVMERYGTKFMDEYQAIMTK 483
           TDLPGRRYCFANQPDIGLWNIAQF+ TL+ AKLI DKEA+Y MERYG KFMDEYQA+MT+
Sbjct: 427 TDLPGRRYCFANQPDIGLWNIAQFTATLSTAKLISDKEADYAMERYGNKFMDEYQAMMTR 486

Query: 484 KLGLPKYNKQIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGK 543
           KLGLPKYNKQ+ISKLLNNMAVDKVDYTNFFR LSNVKADP IPEDELLVPLKAVLLDIG+
Sbjct: 487 KLGLPKYNKQLISKLLNNMAVDKVDYTNFFRLLSNVKADPKIPEDELLVPLKAVLLDIGQ 546

Query: 544 ERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEV 603
           ERKEAW+SWV SY+ EL +SGISDE+RKA MNSVNPKYVLRNYLCQ+AIDAAE GD+ EV
Sbjct: 547 ERKEAWMSWVQSYVHELAASGISDEQRKAQMNSVNPKYVLRNYLCQTAIDAAEQGDYTEV 606

Query: 604 RRLLKLMERPYDEQPGMEKYARLPPAWAYRPGVCMLSCSS 643
           RRLLKLMERPYDEQPGMEKYARLPPAWAYRPGVCMLSCSS
Sbjct: 607 RRLLKLMERPYDEQPGMEKYARLPPAWAYRPGVCMLSCSS 646

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|297746392\|emb\|CBI16448.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|225435594\|ref\|XP_002285614.1\| PREDICTED: UPF0061 protein AZOSEA38000-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449462599\|ref\|XP_004149028.1\| PREDICTED: UPF0061 protein AZOSEA38000-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|255544744\|ref\|XP_002513433.1\| Selenoprotein O, putative [Ricinus communis] gi\|223547341\|gb\|EEF48836.1\| Selenoprotein O, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|13430492\|gb\|AAK25868.1\|AF360158_1 unknown protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|356576911\|ref\|XP_003556573.1\| PREDICTED: UPF0061 protein AZOSEA38000-like [Glycine max]	Back alignment and taxonomy information

>gi\|51971098\|dbj\|BAD44241.1\| unnamed protein product [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|30684227\|ref\|NP_196807.2\| uncharacterized protein [Arabidopsis thaliana] gi\|24030204\|gb\|AAN41282.1\| unknown protein [Arabidopsis thaliana] gi\|332004460\|gb\|AED91843.1\| uncharacterized protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|51971224\|dbj\|BAD44304.1\| unnamed protein product [Arabidopsis thaliana] gi\|51971665\|dbj\|BAD44497.1\| unnamed protein product [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		643
TAIR\|locus:2182265		633	AT5G13030 "AT5G13030" [Arabido	0.945	0.960	0.779	4.1e-262
MGI\|MGI:1919007		667	1300018J18Rik "RIKEN cDNA 1300	0.631	0.608	0.463	2.2e-101
UNIPROTKB\|Q87VB1		487	PSPTO_5028 "UPF0061 protein PS	0.402	0.531	0.420	1e-88
UNIPROTKB\|Q60B95		504	MCA0585 "UPF0061 protein MCA05	0.412	0.525	0.417	1.7e-88
POMBASE\|SPAC20G4.05c		568	SPAC20G4.05c "UPF0061 family p	0.346	0.392	0.418	6.8e-83
UNIPROTKB\|Q8EJX6		484	SO_0330 "UPF0061 protein SO_03	0.482	0.640	0.335	5e-77
TIGR_CMR\|SO_0330		484	SO_0330 "conserved hypothetica	0.482	0.640	0.335	5e-77
UNIPROTKB\|Q5LQK9		472	SPO2480 "UPF0061 protein SPO24	0.293	0.400	0.477	1.1e-73
TIGR_CMR\|SPO_2480		472	SPO_2480 "conserved hypothetic	0.293	0.400	0.477	1.1e-73
UNIPROTKB\|Q81YI0		488	BAS3307 "UPF0061 protein BA_35	0.298	0.393	0.449	4e-72

TAIR\|locus:2182265 AT5G13030 "AT5G13030" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2522 (892.8 bits), Expect = 4.1e-262, P = 4.1e-262
 Identities = 481/617 (77%), Positives = 534/617 (86%)

Query:    28 RLPKFPFYPAYFTKSPSCPSIACHVSTTGGGGAAQME-SSASVDSVTHDLKNQRLDTETE 86
             ++P  P  P  F  SPS  S    + ++    ++    + +S DS+  DL+NQ L     
Sbjct:    25 KVPFCPSLPRQFRLSPSRSSSFRRMESSPASSSSPTPVTDSSADSLAKDLQNQSLGA--- 81

Query:    87 TDGGDESKMTKKLKALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQ 146
              D G   K+ KKL   ED NWDHSFV+ELPGDPRTD I REVLHACY+KVSPS EV++PQ
Sbjct:    82 VDEG--VKIKKKL---EDFNWDHSFVKELPGDPRTDVISREVLHACYSKVSPSVEVDDPQ 136

Query:   147 LVAWSESVADSLELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGR 206
             LVAWS SVA+ L+LDPKEFERPDFPL  SGA PL GA+ YAQCYGGHQFGMWAGQLGDGR
Sbjct:   137 LVAWSVSVAELLDLDPKEFERPDFPLMLSGAKPLPGAMSYAQCYGGHQFGMWAGQLGDGR 196

Query:   207 AITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRA 266
             AITLGE+LN K ERWELQLKGAG+TPYSRFADGLAVLRSSIREFLCSE MH LGIPTTRA
Sbjct:   197 AITLGEVLNSKGERWELQLKGAGRTPYSRFADGLAVLRSSIREFLCSETMHCLGIPTTRA 256

Query:   267 LCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRFGSYQIHASRGQEDLDIVRTLAD 326
             LCL+TTG+ VTRDMFYDGNPKEEPGAIVCRV+QSFLRFGSYQIHASRG+EDLDIVR LAD
Sbjct:   257 LCLLTTGQNVTRDMFYDGNPKEEPGAIVCRVSQSFLRFGSYQIHASRGKEDLDIVRKLAD 316

Query:   327 YAIRHHFRHIENMNKSESLSFSTGDEDHSVVDLTSNKYAAWAVEVAERTASLVAQWQGVG 386
             YAI+HHF HIE+M++S+SLSF TGDED SVVDLTSNKYAAW VE+AERTA+LVA+WQGVG
Sbjct:   317 YAIKHHFPHIESMDRSDSLSFKTGDEDDSVVDLTSNKYAAWIVEIAERTATLVARWQGVG 376

Query:   387 FTHGVLNTDNMSILGLTIDYGPFGFLDAFDPSFTPNTTDLPGRRYCFANQPDIGLWNIAQ 446
             FTHGVLNTDNMSILG TIDYGPFGFLDAFDPS+TPNTTDLPGRRYCFANQPDIGLWNIAQ
Sbjct:   377 FTHGVLNTDNMSILGQTIDYGPFGFLDAFDPSYTPNTTDLPGRRYCFANQPDIGLWNIAQ 436

Query:   447 FSTTLAAAKLIDDKEANYVMERYGTKFMDEYQAIMTKKLGLPKYNKQIISKLLNNMAVDK 506
             FS TLA A+LI+ KEANY MERYG KFMDEYQAIM+KKLGL KYNK++ISKLLNNM+VDK
Sbjct:   437 FSKTLAVAQLINQKEANYAMERYGDKFMDEYQAIMSKKLGLTKYNKEVISKLLNNMSVDK 496

Query:   507 VDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGIS 566
             VDYTNFFR L+NVKA+P+ PE+ELL PLKAVLLDIGKERKEAWI W+ SYIQE+  S +S
Sbjct:   497 VDYTNFFRLLANVKANPNTPENELLKPLKAVLLDIGKERKEAWIKWMRSYIQEVGGSEVS 556

Query:   567 DEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARL 626
             DEERKA M+SVNPKY+LRNYLCQSAIDAAE GDF EV  L++LM+RPY+EQPGMEKYARL
Sbjct:   557 DEERKARMDSVNPKYILRNYLCQSAIDAAEQGDFSEVNNLIRLMKRPYEEQPGMEKYARL 616

Query:   627 PPAWAYRPGVCMLSCSS 643
             PPAWAYRPGVCMLSCSS
Sbjct:   617 PPAWAYRPGVCMLSCSS 633

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

MGI\|MGI:1919007 1300018J18Rik "RIKEN cDNA 1300018J18 gene" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|Q87VB1 PSPTO_5028 "UPF0061 protein PSPTO_5028" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)]	Back alignment and assigned GO terms

UNIPROTKB\|Q60B95 MCA0585 "UPF0061 protein MCA0585" [Methylococcus capsulatus str. Bath (taxid:243233)]	Back alignment and assigned GO terms

POMBASE\|SPAC20G4.05c SPAC20G4.05c "UPF0061 family protein" [Schizosaccharomyces pombe (taxid:4896)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8EJX6 SO_0330 "UPF0061 protein SO_0330" [Shewanella oneidensis MR-1 (taxid:211586)]	Back alignment and assigned GO terms

TIGR_CMR\|SO_0330 SO_0330 "conserved hypothetical protein" [Shewanella oneidensis MR-1 (taxid:211586)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5LQK9 SPO2480 "UPF0061 protein SPO2480" [Ruegeria pomeroyi DSS-3 (taxid:246200)]	Back alignment and assigned GO terms

TIGR_CMR\|SPO_2480 SPO_2480 "conserved hypothetical protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]	Back alignment and assigned GO terms

UNIPROTKB\|Q81YI0 BAS3307 "UPF0061 protein BA_3567/GBAA_3567/BAS3307" [Bacillus anthracis (taxid:1392)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q2Y8V8	Y1510_NITMU	No assigned EC number	0.4550	0.8055	0.9168	yes	no
C1AED7	Y3822_GEMAT	No assigned EC number	0.4616	0.8024	0.9885	yes	no
Q7UKT5	Y9953_RHOBA	No assigned EC number	0.4597	0.8055	0.9592	yes	no
A5FG48	Y2793_FLAJ1	No assigned EC number	0.4251	0.8024	0.9885	yes	no
A1K5T6	Y1574_AZOSB	No assigned EC number	0.5027	0.7962	0.9865	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		643
PRK00029		487	PRK00029, PRK00029, hypothetical protein; Validate	0.0
COG0397		488	COG0397, COG0397, Uncharacterized conserved protei	0.0
pfam02696		487	pfam02696, UPF0061, Uncharacterized ACR, YdiU/UPF0	1e-115
PHA03033		142	PHA03033, PHA03033, hypothetical protein; Provisio	0.004

>gnl\|CDD\|234583 PRK00029, PRK00029, hypothetical protein; Validated	Back alignment and domain information

 Score =  627 bits (1619), Expect = 0.0
 Identities = 238/549 (43%), Positives = 311/549 (56%), Gaps = 65/549 (11%)

Query: 98  KLKALEDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADS 157
            +  L  L +D+ F R  P              A YT+V+P      P+L   ++ +A  
Sbjct: 1   TMNPLLALPFDNRFARLGP--------------AFYTRVAP-TPFPAPRLRFRNDELAAL 45

Query: 158 LELDPKEFERPDFPLFFSGATPLAGAVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLK 217
           L LDP+E + P+F   F G   L G  P A  Y GHQFG++  QLGDGR I LGE+ +  
Sbjct: 46  LGLDPEELDDPEFAEVFGGNALLPGMEPLAMVYHGHQFGVYNPQLGDGRGILLGEVRDAD 105

Query: 218 SERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIPTTRALCLVTTGKFVT 277
              ++LQLKGAG+TPYSR  DG AVLRSSIRE+L SEAMH LGIPTTRAL LV TG+ V 
Sbjct: 106 GRLYDLQLKGAGRTPYSRMGDGRAVLRSSIREYLASEAMHALGIPTTRALSLVETGEPVY 165

Query: 278 RDMFYDGNPKEEPGAIVCRVAQSFLRFGSYQIHASRGQEDLDIVRTLADYAIRHHFRHIE 337
           R+         E GA++ RVA S +RFG+++  A RG  +L  +R LADY I  H+  + 
Sbjct: 166 RE-------SPERGAVLTRVAPSHIRFGTFERFAYRGDPEL--LRQLADYVIARHYPELA 216

Query: 338 NMNKSESLSFSTGDEDHSVVDLTSNKYAAWAVEVAERTASLVAQWQGVGFTHGVLNTDNM 397
           +                       + Y A   EV ERTA L+AQWQ VGF HGV+NTDNM
Sbjct: 217 D---------------------AEDPYLALFAEVVERTARLIAQWQAVGFVHGVMNTDNM 255

Query: 398 SILGLTIDYGPFGFLDAFDPSFTPNTTDLPGRRYCFANQPDIGLWNIAQFSTTLAAAKLI 457
           SILG TIDYGP+GFLD +DP FT N +D  G RY F NQP I LWN+A+ +  L    LI
Sbjct: 256 SILGETIDYGPYGFLDDYDPGFTCNHSDHQG-RYAFGNQPAIALWNLARLAQALLP--LI 312

Query: 458 DDKEANYVMERYGTKFMDEYQAIMTKKLGLPKYNKQ---IISKLLNNMAVDKVDYTNFFR 514
             +     ++R+G  +   Y+A M  KLGL    ++   +++ LL  MA  + DYT  FR
Sbjct: 313 AVEALQAALDRFGDAYQAAYRARMRAKLGLFTEEEEDNALLNALLALMARSRADYTLTFR 372

Query: 515 ALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALM 574
            LS         +     PL+ + +D     + A+ +W+  Y   L    +SD ER+  M
Sbjct: 373 RLS------LAEDASAASPLRDLFID-----RAAFDAWLARYRARLAQEPVSDAERQQAM 421

Query: 575 NSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWAYRP 634
            +VNPKYVLRNYL + AI+AAE GD+ E+ RLL+++ RPYDEQP  E YA  PP W    
Sbjct: 422 RAVNPKYVLRNYLAEQAIEAAEEGDWSELERLLEVLRRPYDEQPEFEAYAARPPDWG--- 478

Query: 635 GVCMLSCSS 643
               +SCSS
Sbjct: 479 KHLEVSCSS 487

Length = 487

>gnl\|CDD\|223474 COG0397, COG0397, Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>gnl\|CDD\|217189 pfam02696, UPF0061, Uncharacterized ACR, YdiU/UPF0061 family	Back alignment and domain information

>gnl\|CDD\|165330 PHA03033, PHA03033, hypothetical protein; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		643
PRK00029		487	hypothetical protein; Validated	100.0
COG0397		488	Uncharacterized conserved protein [Function unknow	100.0
PF02696		487	UPF0061: Uncharacterized ACR, YdiU/UPF0061 family;	100.0
KOG2542		500	consensus Uncharacterized conserved protein (YdiU	100.0
KOG2542		500	consensus Uncharacterized conserved protein (YdiU	99.52
PF06293		206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	95.65
PRK15123		268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	94.21

>PRK00029 hypothetical protein; Validated	Back alignment and domain information

Probab=100.00  E-value=2.7e-176  Score=1428.54  Aligned_cols=479  Identities=49%  Similarity=0.834  Sum_probs=447.6

Q ss_pred             ccCcccccccccCCCCCCCCCCcccccCcceeecCCCCCCCCCeEEeecHHHHHhCCCCCCCCCCCCcchhccCCcCCCC
Q 006475          103 EDLNWDHSFVRELPGDPRTDSIPREVLHACYTKVSPSAEVENPQLVAWSESVADSLELDPKEFERPDFPLFFSGATPLAG  182 (643)
Q Consensus       103 ~~l~f~~~~~~~Lp~D~~~~~~~R~v~~~~ys~v~P~~~~~~P~lv~~s~~la~~LgLd~~~~~~~~~~~~~sGn~~~~g  182 (643)
                      ..++|+|+|.+.              +++||++|.|+| +++|+||++|+++|++||||++++++++++++||||.+++|
T Consensus         6 ~~~~~~~~~~~l--------------~~~~~~~v~p~~-~~~p~l~~~n~~la~~Lgld~~~~~~~~~~~~~sG~~~~~g   70 (487)
T PRK00029          6 LALPFDNRFARL--------------GPAFYTRVAPTP-FPAPRLRFRNDELAALLGLDPEELDDPEFAEVFGGNALLPG   70 (487)
T ss_pred             ccCCCCCCHhhc--------------CccceeecCCcc-CCCCEEEEeCHHHHHHcCCCchhcCCHHHHHHhcCCCCCCC
Confidence            345688888653              369999999995 99999999999999999999999999999999999999999


Q ss_pred             CCcchhhccccCCCcCCCCCCCcceeeeceeecCCCceeEeeeecCCCCCccccCCcccchhhhhHHHHHHHHhhhcCCC
Q 006475          183 AVPYAQCYGGHQFGMWAGQLGDGRAITLGEILNLKSERWELQLKGAGKTPYSRFADGLAVLRSSIREFLCSEAMHFLGIP  262 (643)
Q Consensus       183 ~~P~A~~YaGHQFG~fagQLGDGRAilLGEv~~~~G~r~ElQLKGAG~TPySR~gDGRAVLRSsIREyL~SEAMhaLGIP  262 (643)
                      +.|+||||+|||||+|||||||||||+||||++++|+||||||||||+|||||+|||||||||||||||||||||+||||
T Consensus        71 ~~P~A~~YaGHQFG~~~pqLGDGRailLGEv~~~~g~~~dlqLKGsG~TPySR~gDGRAvLrssiREyL~SEAMhaLGIP  150 (487)
T PRK00029         71 MEPLAMVYHGHQFGVYNPQLGDGRGILLGEVRDADGRLYDLQLKGAGRTPYSRMGDGRAVLRSSIREYLASEAMHALGIP  150 (487)
T ss_pred             cchHHHHHhcccCCCCCCCCCCcceEEEEEEECCCCCEEEEeccCCCCCCCCCCCCCchhhhhHHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcceeEEEecCCeeeeccccCCCCCCCCceEEEeecCCceeecchhhhhccCCCCHHHHHHHHHHHHHhhcCcccccccc
Q 006475          263 TTRALCLVTTGKFVTRDMFYDGNPKEEPGAIVCRVAQSFLRFGSYQIHASRGQEDLDIVRTLADYAIRHHFRHIENMNKS  342 (643)
Q Consensus       263 TTRALslv~s~~~V~Re~~y~g~~~~EpgAVv~RvApShIRfGsFE~fa~r~~~d~~~l~~LaDy~I~~hyP~~~~~~~~  342 (643)
                      ||||||||+||++|+|+       +.||||||||||+|||||||||+|+++  ++.+.|++|+||||++|||++.+    
T Consensus       151 TTRaLalv~tge~V~R~-------~~e~gAvl~RvA~ShiRfGtFe~~a~~--~~~~~l~~L~dy~I~~hyP~~~~----  217 (487)
T PRK00029        151 TTRALSLVETGEPVYRE-------SPERGAVLTRVAPSHIRFGTFERFAYR--GDPELLRQLADYVIARHYPELAD----  217 (487)
T ss_pred             ccceEEEEecCCceecC-------CCCceeEEEEecCccccceeehhhhhc--CCHHHHHHHHHHHHHHHCccccc----
Confidence            99999999999999999       689999999999999999999999999  68999999999999999999976    


Q ss_pred             ccccCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCceeeeeeecccccccccCCCCCCCCC
Q 006475          343 ESLSFSTGDEDHSVVDLTSNKYAAWAVEVAERTASLVAQWQGVGFTHGVLNTDNMSILGLTIDYGPFGFLDAFDPSFTPN  422 (643)
Q Consensus       343 ~~~~f~~~~~~~~~~~~~~~~y~~l~~eVv~RtA~LVA~WQ~vGF~HGVmNTDNmSI~GlTIDYGPfaFmD~fdP~~v~N  422 (643)
                                       .+++|++||++||+|||+|||+||+|||||||||||||||+|+|||||||||||.|||+||||
T Consensus       218 -----------------~~~~y~~~~~~Vv~rtA~lvA~Wq~vGFvHGVmNTDNmsI~GeTiDYGP~aFmd~ydp~~v~n  280 (487)
T PRK00029        218 -----------------AEDPYLALFAEVVERTARLIAQWQAVGFVHGVMNTDNMSILGETIDYGPYGFLDDYDPGFTCN  280 (487)
T ss_pred             -----------------cccHHHHHHHHHHHHHHHHHHHHHHhhccccccCCcCceeeeeeccCCchhhhhhcCCCcccc
Confidence                             567899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCccccCChhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc---cchHHHHHHHH
Q 006475          423 TTDLPGRRYCFANQPDIGLWNIAQFSTTLAAAKLIDDKEANYVMERYGTKFMDEYQAIMTKKLGLP---KYNKQIISKLL  499 (643)
Q Consensus       423 ~sD~~G~RYaf~nQP~I~~WNL~rLaeaL~p~~li~~~~a~~~L~~y~~~f~~~y~~~m~~KLGL~---~~d~~Li~~ll  499 (643)
                      |||++| ||||+|||+|++|||+|||+||.|  ||+.+.++++|++|.++|+++|.++|++||||.   +.|.+||++||
T Consensus       281 ~~D~~G-RYaf~nQP~i~~WNL~rLa~aL~p--li~~~~~~~~L~~f~~~~~~~~~~~m~~KLGL~~~~~~d~~Li~~ll  357 (487)
T PRK00029        281 HSDHQG-RYAFGNQPAIALWNLARLAQALLP--LIAVEALQAALDRFGDAYQAAYRARMRAKLGLFTEEEEDNALLNALL  357 (487)
T ss_pred             cCCCCc-cccccCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHH
Confidence            999998 999999999999999999999996  888888999999999999999999999999995   34789999999


Q ss_pred             HHHHhCCCChhHHHHHhhccCCCCCCCcchhhhhHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHhcCC
Q 006475          500 NNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNP  579 (643)
Q Consensus       500 ~lm~~~~~DfT~~FR~Ls~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Wl~~y~~rl~~~~~~~~~r~~~M~~~NP  579 (643)
                      ++|+++++|||+|||.|++......      ...+.+.+.+     .+.|.+|+++|++||..+..+.++|++.|+++||
T Consensus       358 ~~m~~~~~D~t~~Fr~L~~~~~~~~------~~~l~~~~~~-----~~~~~~W~~~y~~rl~~~~~~~~~r~~~M~~~NP  426 (487)
T PRK00029        358 ALMARSRADYTLTFRRLSLAEDASA------ASPLRDLFID-----RAAFDAWLARYRARLAQEPVSDAERQQAMRAVNP  426 (487)
T ss_pred             HHHHHcCCCchHHHHHhhhccCccc------hhhhhhhccC-----HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHccCC
Confidence            9999999999999999986421111      1123333433     4679999999999999888889999999999999


Q ss_pred             CcccchhhHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCccccccccCCCcccCCCCceeeccCC
Q 006475          580 KYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWAYRPGVCMLSCSS  643 (643)
Q Consensus       580 ~fIlRN~~~eeaI~~Ae~GD~s~~~~L~~~l~~Py~~~~~~e~y~~~pp~~~~~~~~~~~SCSS  643 (643)
                      +||||||++|+||++||+|||+++++|+++|++||+++++.++|+.+||+|+.   ++++||||
T Consensus       427 ~~ilRN~~~e~ai~~Ae~gD~s~~~~ll~~l~~Py~~~~~~~~~~~~pp~~~~---~~~~~Css  487 (487)
T PRK00029        427 KYVLRNYLAEQAIEAAEEGDWSELERLLEVLRRPYDEQPEFEAYAARPPDWGK---HLEVSCSS  487 (487)
T ss_pred             ceeccHHHHHHHHHHHHcCChHHHHHHHHHHhCccccCcchhhhccCCCcccC---eeeecCCC
Confidence            99999999999999999999999999999999999999999999999999964   35699998

>COG0397 Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF02696 UPF0061: Uncharacterized ACR, YdiU/UPF0061 family; InterPro: IPR003846 The proteins in this entry are functionally uncharacterised	Back alignment and domain information

>KOG2542 consensus Uncharacterized conserved protein (YdiU family) [Function unknown]	Back alignment and domain information

>KOG2542 consensus Uncharacterized conserved protein (YdiU family) [Function unknown]	Back alignment and domain information

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases	Back alignment and domain information

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		643
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 51.0 bits (121), Expect = 1e-06
 Identities = 83/646 (12%), Positives = 174/646 (26%), Gaps = 211/646 (32%)

Query: 78  NQRLDTETETDGGDESKMTKKLKALEDLNWDHSFVRELPGDPR-TDSIPREVLHACYTKV 136
           +  +D ET      E +   K   L     + +FV     D +    +P+ +L       
Sbjct: 4   HHHMDFET-----GEHQYQYK-DILSVF--EDAFVDNF--DCKDVQDMPKSIL------- 46

Query: 137 SPSAEVEN----PQLVAWSESVADSLELDPKE----F----ERPDFPLFFSG--ATPLAG 182
               E+++       V+ +  +  +L    +E    F     R ++    S         
Sbjct: 47  -SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP 105

Query: 183 AVPYAQCYGGHQFGMW-AGQLGDGRAITLGE-ILNLKSERWELQ---------LKGAGKT 231
           ++     Y   +  ++   Q+     ++  +  L L+    EL+         + G+GKT
Sbjct: 106 SMMTRM-YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164

Query: 232 PYSRFADGLA--VLRSSIREFLCSEAMHFLGIPTTR----------ALCLVTTGKFVTRD 279
                   +A  V  S   +      + +L +               L       + +R 
Sbjct: 165 W-------VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217

Query: 280 MFYDGNPKEEPGAIVCRVAQSFLRFGSYQIHASRGQEDLDIV----------------RT 323
             +  N K    +I     Q+ LR     + +   +  L ++                + 
Sbjct: 218 -DHSSNIKLRIHSI-----QAELR---RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI 268

Query: 324 L--------ADYAIRHHFRHI------ENMNKSESLS-FSTGDEDHSVVDLTSNKYAAWA 368
           L         D+       HI        +   E  S           +D          
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL------KYLDCRPQDLPREV 322

Query: 369 VEVAERTASLVA--------QWQGVGFTHGVLNTDNMSILGLTIDYGPFGFLDAFDPS-- 418
           +    R  S++A         W    + H  +N D ++     I+      L+  +P+  
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDN--WKH--VNCDKLTT---IIE----SSLNVLEPAEY 371

Query: 419 ---------FTPNTTDLPGRRYCFANQPDIGLWN------IAQFSTTLAAAKLI--DDKE 461
                    F P +  +P             +W       +      L    L+    KE
Sbjct: 372 RKMFDRLSVF-PPSAHIPTILLSL-------IWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423

Query: 462 ANYVMERYGTKFMDEYQAIMTKKLGLPKYNKQIISKL-------LNNMAVDKVD-Y---- 509
           +   +          Y  +  K       ++ I+           +++    +D Y    
Sbjct: 424 STISI-------PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476

Query: 510 -------------TNFFRAL--------SNVKADPSIPEDELLVPLKAVLLDIGKERK-- 546
                           FR +          ++ D +         +   L  +   +   
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS--GSILNTLQQLKFYKPYI 534

Query: 547 -----------EAWISWVLSYIQELLSSGISDEERKALMNSVNPKY 581
                       A + ++    + L+ S  +D  R ALM      +
Sbjct: 535 CDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIF 580

PyMOL of 1vt4

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00