Citrus Sinensis ID: 006494

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640---
Protein Sequence
MERQMVVMEGATGENQNGVSSSLNECDRVVNELMQVIDTIGSYGGFRKTQRKECLNMVRRLKLLVPLLEEIRELDGQVSSEALNCLANLKKPLLAAKKLLKDCNYGSKIYLAAESEAVMSRFHAVYDKLYEALDDVPYDELGISDEVKEQVELMRMQLQRAKGRTDTQDMELAMDMMVVFSKEDDRNADSAILERLAKKLELHTIADLKAETLAVRKLVKERGGHKADSISQITDLLGKFKQIAGVEDTLVLDGSVSARKLQRCQTMLVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLIVQWCEKNNVELPKKDTNTGSDASSAALIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSKREHIP
Secondary Structure (PSIPRED)
cccHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHcccccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHccccccHHHHcccccHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEcccccccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEcHHHHHHHHHHHHHHHHHHHHcccccHccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHcccccEHHHccccEEEEccccccHHHHHHHHHcccccccccccEcccccccHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcHEEcccccHHHHHHHHHccccccHHHHHHHHHHHHHccccHHHHHHHcHHHHHHHHHHcccccHHHHHHHHHHHHHccHHHHHHHHccccHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MERQMVVMegatgenqngvssslNECDRVVNELMQVIDTIgsyggfrktQRKECLNMVRRLKLLVPLLEEIRELDGQVSSEALNCLANLKKPLLAAKKLLKDCNYGSKIYLAAESEAVMSRFHAVYDKLYEalddvpydelgisDEVKEQVELMRMQLQRakgrtdtqDMELAMDMMVVFSKEDDRNADSAILERLAKKLELHTIADLKAETLAVRKLVKergghkadsISQITDLLGKFKQIAGVEDTLVLDGSVSARKLQRCQtmlvpheflcpvtleimtdpvivatgqTYERESIQRWLnsnhktcpktgqildhlslapnYALRNLIVQWCEknnvelpkkdtntgsdasSAALIEEICSLIQNLSssqlnikrDSVMKIRMLskenpdnriliannggirplvqllsypdskiqEHTVTALLNLSLdetnkrhiaregAIPAIIEILQNGTNEARENSAAALFSLSmldenrvmvgnlngipplvNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLashpegrneigrLSFIETLVEIIkngtpknkeCATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHmskrehip
Flexible Loop (DISEMBL)
MERQMVVMegatgenqngvsssLNECDRVVNELMQVIDTigsyggfrktqrKECLNMVRRLKLLVPLLEEIRELDGQVSSEALNCLANLKKPLLAAKKLLKDCNYGSKIYLAAESEAVMSRFHAVYDKLYEALDDVPYDELGISDEVKEQVELMRMQLQrakgrtdtqdMELAMDMMVVFSKEDDRNADSAILERLAKKLELHTIADLKAETLAVRKLVKergghkadsisQITDLLGKFKQIAGVEDTLVLDGSVSARKLQRCQTMLVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLIVQWCEKNNvelpkkdtntgsDASSAALIEEICSLIQnlsssqlnikRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLsinqsnksraiKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIkngtpknkECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRkansllqhmskrehip
Low Complexity Region (SEG)
MERQMVVMEGATGENQNGVSSSLNECDRVVNELMQVIDTIGSYGGFRKTQRKECLNMVRRLKLLVPLLEEIRELDGQVSSEalnclanlkkpllaakkllkDCNYGSKIYLAAESEAVMSRFHAVYDKLYEALDDVPYDELGISDEVKEQVELMRMQLQRAKGRTDTQDMELAMDMMVVFSKEDDRNADSAILERLAKKLELHTIADLKAETLAVRKLVKERGGHKADSISQITDLLGKFKQIAGVEDTLVLDGSVSARKLQRCQTMLVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLIVQWCEKNNVELPKKDTNTGSDASSAALIEEICsliqnlsssqlniKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSKREHIP
Disordered region (IsUnstruct)
************************ECDRVVNELMQVIDTIGSYGGFRKTQRKECLNMVRRLKLLVPLLEEIRELDGQVSSEALNCLANLKKPLLAAKKLLKDCNYGSKIYLAAESEAVMSRFHAVYDKLYEALDDVPYDELGISDEV*****************************MVVF**********AILERLAKKLELHTIADLKAETLAVRKLVKERGGHKADSISQITDLLGKFKQIAGVEDTLVLDGSVSARKLQRCQTMLVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLIVQWCEKNNV****************ALIEEICSLIQNLS***LNI****VMKIRM******DNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTNE***NSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGT*********************
Disordered Region (DISOPRED)
***************************RVVNELMQVIDTIGSYGGFRKTQRKECLNMVRRLKLLVPLLEEIRE**********NCLANLKKPLLAAKKLLKDCNYGSKIYLAAESEAVMSRFHAVYDKLYEALDDVPYDELGISDEVKEQVELMRMQLQRAKGRTDTQDMELAM***********************************AETL******************QITDLLGKFKQIAG***********************VPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLIVQWCEKNNV****************************************VMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSKR****
Disordered Region (DISEMBL)
MERQMVVMEGAT**********LNECDRVVNELMQVIDTIGSYGGFRKTQRKECLNMVRRLKLLVPLLEEIRELDGQVSSEALNCLANLKKPLLAAKKLLKDCNYGSKIYLAAESEAVMSRFHAVYDKLYEALDDVPYDELGISDEVKEQVELMRMQLQ********QDMELAMDMMVVFSKEDDRNADSAILERLAKKLELHTIADLKAETLAVRKLV*********SISQITDLLGKFKQIAGVEDTLVLDGSVSARKLQRCQTMLVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLIVQWCEKNNVELPKKDTNTGSDASSAALIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQ*********
Disordered Region (DISPRO)
***Q*VVMEGA*****NGVSSSLNECDRVVNELMQVIDTIGSYGGFRKTQRKECLNMVRRLKLLVPLLEEIRELDGQVSSEALNCLANLKKPLLAAKKLLKDCNYGSKIYLAAESEAVMSRFHAVYDKLYEALDDVPYDELGISDEVKEQVELMRMQLQRAKGRTDTQDMELAMDMMVVFSKEDDRNADSAILERLAKKLELHTIADLKAETLAVRKLVKERGGHKADSISQITDLLGKFKQIAGVE******************TMLVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLIVQWCEKNNVELPK**********SAALIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSKRE***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MERQMVVMEGATGENQNGVSSSLNECDRVVNELMQVIDTIGSYGGFRKTQRKECLNMVRRLKLLVPLLEEIRELDGQVSSEALNCLANLKKPLLAAKKLLKDCNYGSKIYLAAESEAVMSRFHAVYDKLYEALDDVPYDELGIxxxxxxxxxxxxxxxxxxxxxTDTQDMELAMDMMVVFSKEDDRNADSAILERLAKKLELHTIADLKAETLAVRKLVKERGGHKADSISQITDLLGKFKQIAGVEDTLVLDGSVSARKLQRCQTMLVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLIVQWCEKNNVELPKKDTNTGSDASSAALIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSKREHIP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	643	2.2.26 [Sep-21-2011]
Q681N2	660	U-box domain-containing p	yes	no	0.945	0.921	0.612	0.0
Q9SNC6	660	U-box domain-containing p	no	no	0.942	0.918	0.464	1e-153
Q5VRH9	611	U-box domain-containing p	no	no	0.916	0.963	0.444	1e-136
Q9ZV31	654	U-box domain-containing p	no	no	0.953	0.937	0.428	1e-130
Q8VZ40	632	U-box domain-containing p	no	no	0.944	0.960	0.401	1e-126
Q0IMG9	694	E3 ubiquitin-protein liga	no	no	0.819	0.759	0.456	1e-124
A2ZLU6	694	Protein spotted leaf 11 O	N/A	no	0.819	0.759	0.456	1e-124
Q9C9A6	628	U-box domain-containing p	no	no	0.923	0.945	0.384	1e-106
Q8GUG9	612	U-box domain-containing p	no	no	0.892	0.937	0.396	1e-103
Q9C7R6	729	U-box domain-containing p	no	no	0.841	0.742	0.324	7e-67

>sp|Q681N2|PUB15_ARATH U-box domain-containing protein 15 OS=Arabidopsis thaliana GN=PUB15 PE=2 SV=2

 Score =  739 bits (1907), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/614 (61%), Positives = 486/614 (79%), Gaps = 6/614 (0%)

Query: 29  VVNELMQVIDTIGSYGGFRKTQRKECLNMVRRLKLLVPLLEEIRELDGQVSSEALNCLAN 88
           +V++++ +++ +    G+R+TQ+KEC N+VRRLK+L+P L+EIR  +       LN    
Sbjct: 53  LVSDIVSIVEFLDQINGYRRTQQKECFNLVRRLKILIPFLDEIRGFESPSCKHFLN---R 109

Query: 89  LKKPLLAAKKLLKDCNYGSKIYLAAESEAVMSRFHAVYDKLYEALDDVPYDELGISDEVK 148
           L+K  LAAKKLL+ C+ GSKIY+A + E +M+RFH++Y+KL   L   P+DEL IS + K
Sbjct: 110 LRKVFLAAKKLLETCSNGSKIYMALDGETMMTRFHSIYEKLNRVLVKAPFDELMISGDAK 169

Query: 149 EQVELMRMQLQRAKGRTDTQDMELAMDMMVVFSKEDDRNADSAILERLAKKLELHTIADL 208
           ++++ +  QL++AK RTDTQD+ELA+DMMVVFSK D RNADSAI+ERLAKKLEL TI DL
Sbjct: 170 DEIDSLCKQLKKAKRRTDTQDIELAVDMMVVFSKTDPRNADSAIIERLAKKLELQTIDDL 229

Query: 209 KAETLAVRKLVKERGGHKADSISQITDLLGKFKQIAGVEDTLVLDGSVSARKLQRCQTML 268
           K ET+A++ L++++GG   ++   I +LL KFK++ G+E T +L   V  + + +  +++
Sbjct: 230 KTETIAIQSLIQDKGGLNIETKQHIIELLNKFKKLQGLEATDILYQPVINKAITKSTSLI 289

Query: 269 VPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYAL 328
           +PHEFLCP+TLEIM DPVI+ATGQTYE+ESIQ+W ++ HKTCPKT Q LDHLSLAPN+AL
Sbjct: 290 LPHEFLCPITLEIMLDPVIIATGQTYEKESIQKWFDAGHKTCPKTRQELDHLSLAPNFAL 349

Query: 329 RNLIVQWCEKNNVELPKKDTNTGSDASSAALIEEICSLIQNLSSSQLNIKRDSVMKIRML 388
           +NLI+QWCEKNN ++P+K+ +  S        +E+  L++ LSSSQL  +R SV ++R+L
Sbjct: 350 KNLIMQWCEKNNFKIPEKEVSPDSQNEQK---DEVSLLVEALSSSQLEEQRRSVKQMRLL 406

Query: 389 SKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPA 448
           ++ENP+NR+LIAN G I  LVQLLSYPDS IQE+ VT LLNLS+DE NK+ I+ EGAIP 
Sbjct: 407 ARENPENRVLIANAGAIPLLVQLLSYPDSGIQENAVTTLLNLSIDEVNKKLISNEGAIPN 466

Query: 449 IIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATA 508
           IIEIL+NG  EARENSAAALFSLSMLDEN+V +G  NGIPPLV+LL++G++RGKKDA TA
Sbjct: 467 IIEILENGNREARENSAAALFSLSMLDENKVTIGLSNGIPPLVDLLQHGTLRGKKDALTA 526

Query: 509 LFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSF 568
           LFNLS+N +NK RAI AGI+  LL LL+DK LGM+DEALSIL LLASHPEGR  IG+LSF
Sbjct: 527 LFNLSLNSANKGRAIDAGIVQPLLNLLKDKNLGMIDEALSILLLLASHPEGRQAIGQLSF 586

Query: 569 IETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRK 628
           IETLVE I+ GTPKNKECATSVLLELG NNS FILAALQ+GVYE+LVEIT  GTNR QRK
Sbjct: 587 IETLVEFIRQGTPKNKECATSVLLELGSNNSSFILAALQFGVYEYLVEITTSGTNRAQRK 646

Query: 629 ANSLLQHMSKREHI 642
           AN+L+Q +SK E I
Sbjct: 647 ANALIQLISKSEQI 660

Functions as an E3 ubiquitin ligase.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q9SNC6|PUB13_ARATH U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=1 SV=1

 Score =  542 bits (1396), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 287/618 (46%), Positives = 398/618 (64%), Gaps = 12/618 (1%)

Query: 33  LMQVIDTIGSYGGFRKTQRKECLNMVRRLKLLVPLLEEIRELDGQVSSEALNCLANLKKP 92
           L+ V++ I +   +R T +K C N+ RRLKLLVP+ EEIRE +  +S + L  L NLK+ 
Sbjct: 12  LIDVVNEIAAISDYRITVKKLCYNLARRLKLLVPMFEEIRESNEPISEDTLKTLMNLKEA 71

Query: 93  LLAAKKLLKDCNYGSKIYLAAESEAVMSRFHAVYDKLYEALDDVPYDELGISDEVKEQVE 152
           + +AK  LK C+ GSKIYL  E E V S+   V  KL ++L  +PY+EL ISDEV+EQVE
Sbjct: 72  MCSAKDYLKFCSQGSKIYLVMEREQVTSKLMEVSVKLEQSLSQIPYEELDISDEVREQVE 131

Query: 153 LMRMQLQRAKGRTDTQDMELAMDMMVVFSKEDDRNADSAILERLAKKLELHTIADLKAET 212
           L+  Q +RAKGR D  D EL  D+  + +K  D +A   +LER+AKKL L  I DL  E+
Sbjct: 132 LVLSQFRRAKGRVDVSDDELYEDLQSLCNKSSDVDAYQPVLERVAKKLHLMEIPDLAQES 191

Query: 213 LAVRKLVKERGGHKADSISQITDLLGKFKQIAGVEDTLVLDGSVSARKLQRCQTM----- 267
           +A+ ++V   GG   ++I ++  +L   K     ED    +  V        QT      
Sbjct: 192 VALHEMVASSGGDVGENIEEMAMVLKMIKDFVQTEDDNGEEQKVGVNSRSNGQTSTAASQ 251

Query: 268 ---LVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAP 324
              ++P +F CP++LE+M DPVIV++GQTYER  I++W+   H TCPKT Q L   +L P
Sbjct: 252 KIPVIPDDFRCPISLEMMRDPVIVSSGQTYERTCIEKWIEGGHSTCPKTQQALTSTTLTP 311

Query: 325 NYALRNLIVQWCEKNNVELPKKDTN----TGSDASSAALIEEICSLIQNLSSSQLNIKRD 380
           NY LR+LI QWCE N++E PK  ++      S  SS A   +I  L+  L+      +R 
Sbjct: 312 NYVLRSLIAQWCEANDIEPPKPPSSLRPRKVSSFSSPAEANKIEDLMWRLAYGNPEDQRS 371

Query: 381 SVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHI 440
           +  +IR+L+K N DNR+ IA  G I  LV LLS PDS+IQEH+VTALLNLS+ E NK  I
Sbjct: 372 AAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRIQEHSVTALLNLSICENNKGAI 431

Query: 441 AREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIR 500
              GAIP I+++L+ G+ EAREN+AA LFSLS++DEN+V +G L  IPPLV LL  G+ R
Sbjct: 432 VSAGAIPGIVQVLKKGSMEARENAAATLFSLSVIDENKVTIGALGAIPPLVVLLNEGTQR 491

Query: 501 GKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGR 560
           GKKDAATALFNL I Q NK +AI+AG+IP+L +LL +   GMVDEAL+IL +L+SHPEG+
Sbjct: 492 GKKDAATALFNLCIYQGNKGKAIRAGVIPTLTRLLTEPGSGMVDEALAILAILSSHPEGK 551

Query: 561 NEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRC 620
             IG    + +LVE I+ G+P+N+E A +VL+ L   +   ++ A + G+   L+++   
Sbjct: 552 AIIGSSDAVPSLVEFIRTGSPRNRENAAAVLVHLCSGDPQHLVEAQKLGLMGPLIDLAGN 611

Query: 621 GTNRGQRKANSLLQHMSK 638
           GT+RG+RKA  LL+ +S+
Sbjct: 612 GTDRGKRKAAQLLERISR 629

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5VRH9|PUB12_ORYSJ U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=PUB12 PE=2 SV=1

 Score =  484 bits (1247), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 272/612 (44%), Positives = 380/612 (62%), Gaps = 23/612 (3%)

Query: 35  QVIDTIGSYGGFRKTQRKECLNMVRRLKLLVPLLEEIRELDGQVSSEALNCLANLKKPLL 94
           +V D I +    R   R+ C ++ RR++LL PLL+    L    SS +   LA+    L 
Sbjct: 4   RVADEIAALPEPRGPLRRPCADLSRRVRLLAPLLDH---LPASSSSSSSTPLADA---LG 57

Query: 95  AAKKLLKDCNYGSKIYLAAESEAVMSRFHAVYDKLYEALDDVPYDELGISDEVKEQVELM 154
           AA+ LL+    GSKI  A   +A +  F  V  +++ ALD +PY+   +  EV+EQV L+
Sbjct: 58  AARDLLRKTRDGSKIDQAMRGDAFLDEFAGVNRQIHLALDALPYNTFHMPQEVQEQVALV 117

Query: 155 RMQLQRAKGRTDTQDMELAMDMMVVFSKEDDRNADSAILERLAKKLELHTIADLKAETLA 214
             Q QRA  RTD  D +L+MD+    +   D  +D A+L R++ KL+LHT+AD+K E++A
Sbjct: 118 HSQFQRASTRTDPPDTQLSMDLAWALT---DNPSDPALLTRISHKLQLHTMADMKNESIA 174

Query: 215 VRKLVKERGGHKADSISQITDLLGKFKQIAGVEDTLVLDGSVSARKLQ-RCQTMLVPHEF 273
           +  +V    G     + Q++ LL K K     ED    + +++ R    + ++ ++P EF
Sbjct: 175 LHNMVISTAGEPDGCVDQMSSLLKKLKDCVVTEDHA--NDALTTRSASIKHRSPIIPDEF 232

Query: 274 LCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLIV 333
            CP++LE+M DPVIV++GQTYER  IQ+WL+S HKTCPKT Q L H SL PN+ L++LI 
Sbjct: 233 RCPISLELMQDPVIVSSGQTYERSCIQKWLDSGHKTCPKTQQPLSHTSLTPNFVLKSLIS 292

Query: 334 QWCEKNNVELPKKDTNT-------GSDASSAALIEEICSLIQNLSSSQLNIKRDSVMKIR 386
           QWCE N +ELPK   N+        SD   A L+    SL+  L S   + +R +  +IR
Sbjct: 293 QWCEANGIELPKNKQNSRDKKAAKSSDYDHAGLV----SLMNRLRSGNQDEQRAAAGEIR 348

Query: 387 MLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAI 446
           +L+K N +NRI IA  G I  LV LLS  D + QEH VTALLNLS+ E NK  I    AI
Sbjct: 349 LLAKRNVNNRICIAEAGAIPLLVNLLSSSDPRTQEHAVTALLNLSIHENNKASIVDSHAI 408

Query: 447 PAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAA 506
           P I+E+L+ G+ E REN+AA LFSLS++DEN+V +G    IPPL+NLL  GS RGKKDAA
Sbjct: 409 PKIVEVLKTGSMETRENAAATLFSLSVVDENKVTIGAAGAIPPLINLLCDGSPRGKKDAA 468

Query: 507 TALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRL 566
           TA+FNL I Q NK RA+KAGI+  L+  L D   GM+DEALS+L +LA +PEG+  I R 
Sbjct: 469 TAIFNLCIYQGNKVRAVKAGIVIHLMNFLVDPTGGMIDEALSLLSILAGNPEGKIVIARS 528

Query: 567 SFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQ 626
             I  LVE+IK G+P+N+E A ++L  L   ++   LAA   GV + L E++  GT+R +
Sbjct: 529 EPIPPLVEVIKTGSPRNRENAAAILWLLCSADTEQTLAAKAAGVEDALKELSETGTDRAK 588

Query: 627 RKANSLLQHMSK 638
           RKA+S+L+ M +
Sbjct: 589 RKASSILELMHQ 600

Possesses E3 ubiquitin-protein ligase in vitro.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9ZV31|PUB12_ARATH U-box domain-containing protein 12 OS=Arabidopsis thaliana GN=PUB12 PE=2 SV=1

 Score =  464 bits (1195), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 271/633 (42%), Positives = 401/633 (63%), Gaps = 20/633 (3%)

Query: 24  NECDRVVNELMQVIDTIGSYGGFRKTQRKECLNMVRRLKLLVPLLEEIRELDGQVSSEAL 83
           +E  ++   L+  I+ I S        +K C N+ RRL LL+P+LEEIR+ + + SSE +
Sbjct: 4   SEKHKLAQTLIDSINEIASISDSVTPMKKHCANLSRRLSLLLPMLEEIRD-NQESSSEVV 62

Query: 84  NCLANLKKPLLAAKKLLKDCNYGSKIYLAAESEAVMSRFHAVYDKLYEALDDVPYDELGI 143
           N L ++K+ LL AK LL   ++ SKIYL  E + VM +F  V   L +AL  +PY+ L I
Sbjct: 63  NALLSVKQSLLHAKDLLSFVSHVSKIYLVLERDQVMVKFQKVTSLLEQALSIIPYENLEI 122

Query: 144 SDEVKEQVELMRMQLQRAKGRT--DTQDMELAMDMMVVFSKEDDRNADSAILERLAKKLE 201
           SDE+KEQVEL+ +QL+R+ G+   D  D EL  D++ ++S       +S ++ R+A+KL+
Sbjct: 123 SDELKEQVELVLVQLRRSLGKRGGDVYDDELYKDVLSLYSGRGSV-MESDMVRRVAEKLQ 181

Query: 202 LHTIADLKAETLAVRKLVKERGGH-KADSISQITDLLGKFKQIA-----GVEDT-LVLDG 254
           L TI DL  E+LA+  +V   GG    +S  +++ +L K K         ++D  L L  
Sbjct: 182 LMTITDLTQESLALLDMVSSSGGDDPGESFEKMSMVLKKIKDFVQTYNPNLDDAPLRLKS 241

Query: 255 SVSARKLQRCQTMLVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTG 314
           S+   +      ++ P EF CP++LE+MTDPVIV++GQTYERE I++WL   H TCPKT 
Sbjct: 242 SLPKSRDDDRDMLIPPEEFRCPISLELMTDPVIVSSGQTYERECIKKWLEGGHLTCPKTQ 301

Query: 315 QILDHLSLAPNYALRNLIVQWCEKNNVELPKKDTNTGSDASSAALI-------EEICSLI 367
           + L    + PNY LR+LI QWCE N +E PK+   +   + +++          +I  L+
Sbjct: 302 ETLTSDIMTPNYVLRSLIAQWCESNGIEPPKRPNISQPSSKASSSSSAPDDEHNKIEELL 361

Query: 368 QNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYP-DSKIQEHTVTA 426
             L+S Q   +R +  +IR+L+K+N  NR+ IA +G I  LV LL+   DS+ QEH VT+
Sbjct: 362 LKLTSQQPEDRRSAAGEIRLLAKQNNHNRVAIAASGAIPLLVNLLTISNDSRTQEHAVTS 421

Query: 427 LLNLSLDETNKRHIA-REGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLN 485
           +LNLS+ + NK  I    GA+P I+ +LQ G+ EAREN+AA LFSLS++DEN+V +G   
Sbjct: 422 ILNLSICQENKGKIVYSSGAVPGIVHVLQKGSMEARENAAATLFSLSVIDENKVTIGAAG 481

Query: 486 GIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDE 545
            IPPLV LL  GS RGKKDAATALFNL I Q NK +A++AG++P L++LL +   GMVDE
Sbjct: 482 AIPPLVTLLSEGSQRGKKDAATALFNLCIFQGNKGKAVRAGLVPVLMRLLTEPESGMVDE 541

Query: 546 ALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAA 605
           +LSIL +L+SHP+G++E+G    +  LV+ I++G+P+NKE + +VL+ L   N   ++ A
Sbjct: 542 SLSILAILSSHPDGKSEVGAADAVPVLVDFIRSGSPRNKENSAAVLVHLCSWNQQHLIEA 601

Query: 606 LQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK 638
            + G+ + L+E+   GT+RG+RKA  LL   S+
Sbjct: 602 QKLGIMDLLIEMAENGTDRGKRKAAQLLNRFSR 634

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8VZ40|PUB14_ARATH U-box domain-containing protein 14 OS=Arabidopsis thaliana GN=PUB14 PE=1 SV=1

 Score =  452 bits (1162), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 249/620 (40%), Positives = 393/620 (63%), Gaps = 13/620 (2%)

Query: 32  ELM-QVIDTIGSYGGFRKTQR---KECLNMVRRLKLLVPLLEEIRELDGQVSSEALNCLA 87
           ELM +++D++    GF  ++    K   ++VRR+ LL P  EE+ +++ ++  + +    
Sbjct: 11  ELMSRLVDSVKEISGFSSSRGFIGKIQGDLVRRITLLSPFFEELIDVNVELKKDQITGFE 70

Query: 88  NLKKPLLAAKKLLKDCNYGSKIYLAAESEAVMSRFHAVYDKLYEALDDVPYDELGISDEV 147
            ++  L ++ +L +  N GSK++   + ++++ +F  +  ++  AL  +PY+++ +S+EV
Sbjct: 71  AMRIALDSSLELFRSVNGGSKLFQLFDRDSLVEKFRDMTVEIEAALSQIPYEKIEVSEEV 130

Query: 148 KEQVELMRMQLQRAKGRTDTQDMELAMDMMVVFSKEDDRNADSAILERLAKKLELHTIAD 207
           +EQV+L+  Q +RAK R +  D++L+ D+ +    E+  + D  IL+RL+++L+L TI +
Sbjct: 131 REQVQLLHFQFKRAKERWEESDLQLSHDLAMA---ENVMDPDPIILKRLSQELQLTTIDE 187

Query: 208 LKAETLAVRKLVKERGGHKADSISQITDLLGKFKQIAGVEDTLVLDGSVSARKLQRCQTM 267
           LK E+ A+ +      G   D   +++ LL        +E +   D S  +R + R ++ 
Sbjct: 188 LKKESHAIHEYFLSYDGDPDDCFERMSSLLKNLVDFVTMESSDP-DPSTGSRIVSRHRSP 246

Query: 268 LVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYA 327
           ++P  F CP++LE+M DPVIV+TGQTYER SIQ+WL++ HKTCPK+ + L H  L PNY 
Sbjct: 247 VIPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYV 306

Query: 328 LRNLIVQWCEKNNVELPK-----KDTNTGSDASSAALIEEICSLIQNLSSSQLNIKRDSV 382
           L++LI  WCE N +ELP+     + T  G  +SS      + SL++ L++     +R + 
Sbjct: 307 LKSLIALWCESNGIELPQNQGSCRTTKIGGSSSSDCDRTFVLSLLEKLANGTTEQQRAAA 366

Query: 383 MKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAR 442
            ++R+L+K N DNR+ IA  G I  LV+LLS PD + QEH+VTALLNLS++E NK  I  
Sbjct: 367 GELRLLAKRNVDNRVCIAEAGAIPLLVELLSSPDPRTQEHSVTALLNLSINEGNKGAIVD 426

Query: 443 EGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGK 502
            GAI  I+E+L+NG+ EAREN+AA LFSLS++DEN+V +G    I  L++LL  G+ RGK
Sbjct: 427 AGAITDIVEVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIQALISLLEEGTRRGK 486

Query: 503 KDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNE 562
           KDAATA+FNL I Q NKSRA+K GI+  L +LL+D   GMVDEAL+IL +L+++ EG+  
Sbjct: 487 KDAATAIFNLCIYQGNKSRAVKGGIVDPLTRLLKDAGGGMVDEALAILAILSTNQEGKTA 546

Query: 563 IGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGT 622
           I     I  LVEII+ G+P+N+E A ++L  L + N   +  A + G    L E+T  GT
Sbjct: 547 IAEAESIPVLVEIIRTGSPRNRENAAAILWYLCIGNIERLNVAREVGADVALKELTENGT 606

Query: 623 NRGQRKANSLLQHMSKREHI 642
           +R +RKA SLL+ + + E +
Sbjct: 607 DRAKRKAASLLELIQQTEGV 626

Functions as an E3 ubiquitin ligase with specific E2 ubiquitin-conjugating enzymes. Undergoes auto-ubiquitination.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q0IMG9|SL11_ORYSJ E3 ubiquitin-protein ligase SPL11 OS=Oryza sativa subsp. japonica GN=SPL11 PE=1 SV=2

 Score =  445 bits (1145), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 249/546 (45%), Positives = 352/546 (64%), Gaps = 19/546 (3%)

Query: 106 GSKIYLAAESEAVMSRFHAVYDKLYEALDDVPYDELGISDEVKEQVELMRMQLQRAKGRT 165
           GS+I L  E ++VM +F  V  +L +AL D+PY+EL ISDEV+EQVEL+  QL+RAK R 
Sbjct: 107 GSRISLVLERDSVMKKFQGVILQLEQALCDIPYNELDISDEVREQVELVHAQLKRAKERI 166

Query: 166 DTQDMELAMDMMVVFSKEDDRNADSAILERLAKKLELHTIADLKAETLAVRKLVKERGGH 225
           D  D E   D++ V+ K  D +A+ AIL RL++KL L TI DL  E+LA+ ++V   GG 
Sbjct: 167 DMPDDEFYNDLLSVYDKNYDPSAELAILGRLSEKLHLMTITDLTQESLALHEMVASGGGQ 226

Query: 226 -KADSISQITDLLGKFKQIAGVED--------TLVLDGSVSARKLQRCQTMLVPHEFLCP 276
              + I +++ LL K K     ++        + VLD +  +R +       +P EF CP
Sbjct: 227 DPGEHIERMSMLLKKIKDFVQTQNPDMGPPMASRVLDSNGDSRPIT------IPDEFRCP 280

Query: 277 VTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLIVQWC 336
           ++LE+M DPVIV+TGQTYER  I++W+ S H TCP T Q +   +L PNY LR+LI QWC
Sbjct: 281 ISLELMKDPVIVSTGQTYERACIEKWIASGHHTCPTTQQKMSTSALTPNYVLRSLISQWC 340

Query: 337 EKNNVELPKKDT--NTGSDASSAALIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPD 394
           E N +E PK+ T  N  + A S++    I +L+  L S     +R +  ++R+L+K N +
Sbjct: 341 ETNGMEPPKRSTQPNKPTPACSSSERANIDALLSKLCSPDTEEQRSAAAELRLLAKRNAN 400

Query: 395 NRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQ 454
           NRI IA  G I  L+ LLS  D + QEH VTALLNLS+ E NK  I   GA+P+I+ +L+
Sbjct: 401 NRICIAEAGAIPLLLSLLSSSDLRTQEHAVTALLNLSIHEDNKASIISSGAVPSIVHVLK 460

Query: 455 NGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSI 514
           NG+ EAREN+AA LFSLS++DE +V +G +  IP LV LL  GS RGKKDAA ALFNL I
Sbjct: 461 NGSMEARENAAATLFSLSVIDEYKVTIGGMGAIPALVVLLGEGSQRGKKDAAAALFNLCI 520

Query: 515 NQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVE 574
            Q NK RAI+AG++P ++ L+ +    ++DEA++IL +L+SHPEG+  IG    +  LVE
Sbjct: 521 YQGNKGRAIRAGLVPLIMGLVTNPTGALMDEAMAILSILSSHPEGKAAIGAAEPVPVLVE 580

Query: 575 IIKNGTPKNKECATSVLLEL--GLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSL 632
           +I +GTP+N+E A +V+L L  G ++   +  A + G+   L E+   GT+RG+RKA  L
Sbjct: 581 MIGSGTPRNRENAAAVMLHLCSGEHHLVHLARAQECGIMVPLRELALNGTDRGKRKAVQL 640

Query: 633 LQHMSK 638
           L+ MS+
Sbjct: 641 LERMSR 646

E3 ubiquitin-protein ligase that negatively regulates programmed cell death and disease resistance. Participates in flowering time control by mediating ubiquitination and subsequent proteasomal degradation of SPIN1.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|A2ZLU6|SL11_ORYSI Protein spotted leaf 11 OS=Oryza sativa subsp. indica GN=SPL11 PE=1 SV=2

 Score =  445 bits (1145), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 249/546 (45%), Positives = 352/546 (64%), Gaps = 19/546 (3%)

Query: 106 GSKIYLAAESEAVMSRFHAVYDKLYEALDDVPYDELGISDEVKEQVELMRMQLQRAKGRT 165
           GS+I L  E ++VM +F  V  +L +AL D+PY+EL ISDEV+EQVEL+  QL+RAK R 
Sbjct: 107 GSRISLVLERDSVMKKFQGVILQLEQALCDIPYNELDISDEVREQVELVHAQLKRAKERI 166

Query: 166 DTQDMELAMDMMVVFSKEDDRNADSAILERLAKKLELHTIADLKAETLAVRKLVKERGGH 225
           D  D E   D++ V+ K  D +A+ AIL RL++KL L TI DL  E+LA+ ++V   GG 
Sbjct: 167 DMPDDEFYNDLLSVYDKNYDPSAELAILGRLSEKLHLMTITDLTQESLALHEMVASGGGQ 226

Query: 226 -KADSISQITDLLGKFKQIAGVED--------TLVLDGSVSARKLQRCQTMLVPHEFLCP 276
              + I +++ LL K K     ++        + VLD +  +R +       +P EF CP
Sbjct: 227 DPGEHIERMSMLLKKIKDFVQTQNPDMGPPMASRVLDSNGDSRPIT------IPDEFRCP 280

Query: 277 VTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLIVQWC 336
           ++LE+M DPVIV+TGQTYER  I++W+ S H TCP T Q +   +L PNY LR+LI QWC
Sbjct: 281 ISLELMKDPVIVSTGQTYERACIEKWIASGHHTCPTTQQKMSTSALTPNYVLRSLISQWC 340

Query: 337 EKNNVELPKKDT--NTGSDASSAALIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPD 394
           E N +E PK+ T  N  + A S++    I +L+  L S     +R +  ++R+L+K N +
Sbjct: 341 ETNGMEPPKRSTQPNKPTPACSSSERANIDALLSKLCSPDTEEQRSAAAELRLLAKRNAN 400

Query: 395 NRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQ 454
           NRI IA  G I  L+ LLS  D + QEH VTALLNLS+ E NK  I   GA+P+I+ +L+
Sbjct: 401 NRICIAEAGAIPLLLSLLSSSDLRTQEHAVTALLNLSIHEDNKASIISSGAVPSIVHVLK 460

Query: 455 NGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSI 514
           NG+ EAREN+AA LFSLS++DE +V +G +  IP LV LL  GS RGKKDAA ALFNL I
Sbjct: 461 NGSMEARENAAATLFSLSVIDEYKVTIGGMGAIPALVVLLGEGSQRGKKDAAAALFNLCI 520

Query: 515 NQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVE 574
            Q NK RAI+AG++P ++ L+ +    ++DEA++IL +L+SHPEG+  IG    +  LVE
Sbjct: 521 YQGNKGRAIRAGLVPLIMGLVTNPTGALMDEAMAILSILSSHPEGKAAIGAAEPVPVLVE 580

Query: 575 IIKNGTPKNKECATSVLLEL--GLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSL 632
           +I +GTP+N+E A +V+L L  G ++   +  A + G+   L E+   GT+RG+RKA  L
Sbjct: 581 MIGSGTPRNRENAAAVMLHLCSGEHHLVHLARAQECGIMVPLRELALNGTDRGKRKAVQL 640

Query: 633 LQHMSK 638
           L+ MS+
Sbjct: 641 LERMSR 646

Defense related protein that negatively regulates programmed cell death. In vitro, possesses E3 ubiquitin ligase activity.

Oryza sativa subsp. indica (taxid: 39946)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9C9A6|PUB10_ARATH U-box domain-containing protein 10 OS=Arabidopsis thaliana GN=PUB10 PE=2 SV=1

 Score =  387 bits (994), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 242/630 (38%), Positives = 377/630 (59%), Gaps = 36/630 (5%)

Query: 27  DRVVNELMQVIDTIGSYGGFRKTQRKECLNMVRRLKLLVPLLEEIRELDGQVSSEALNCL 86
           D ++  + ++ +  G++G F+K    +C ++ RR+ LL  L+EEIR+      S+A + L
Sbjct: 9   DSLIGLIAEINEIPGNFGLFKK----DCSDLARRVGLLTHLIEEIRDSSPPSESDASSSL 64

Query: 87  --------ANLKKPLLAAKKLLKDC-NYGSKIYLAAESEAVMSRFHAVYDKLYEALDDVP 137
                   ++L   L AAK+LL    ++ ++      ++ +  +F  V  KL +AL D+ 
Sbjct: 65  NSHECDWWSDLVVGLQAAKRLLSSATSFQARESSDGAAKRISFQFQCVTWKLEKALGDLT 124

Query: 138 YDELGISDEVKEQVELMRMQLQRAKGRTDTQDMELAMDMMVVFSKEDDRNADSAILERLA 197
           YD   ISDEV+EQVEL R+QL+RA  R  + + +      +    E D +++  ++E+L 
Sbjct: 125 YDRYDISDEVREQVELARLQLRRAMQRYGSLNSK-KFSSGLSEPMEKDASSNRKVIEKLE 183

Query: 198 KKLE-LHTIADLKAETLAVRKLVKERGGHKADSISQITDLLGKFKQIAGVEDTLVLDGSV 256
              E +H+++D         K  +     K+ S+S     L  F    G ++ L    + 
Sbjct: 184 SIPETVHSLSD--------EKKFESPPPWKSSSVS-----LAFFLSKDGDDERLEKAVTE 230

Query: 257 SARKLQRCQTMLVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQI 316
           ++   Q+   + +P +FLCP++LE+M DP IV+TGQTYER  IQRW++  + +CPKT Q 
Sbjct: 231 NSDDSQKSDNLTIPEDFLCPISLELMKDPAIVSTGQTYERSFIQRWIDCGNLSCPKTQQK 290

Query: 317 LDHLSLAPNYALRNLIVQWCEKNNVELPKKDTNTGSDASSAAL------IEEICSLIQNL 370
           L++ +L PNY LR+LI QWC K+N+E P    N  +  S  +       +  I +L+  L
Sbjct: 291 LENFTLTPNYVLRSLISQWCTKHNIEQPGGYMNGRTKNSDGSFRDLSGDMSAIRALVCKL 350

Query: 371 SSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLL-SYPDSKIQEHTVTALLN 429
           SS  +  +R +V +IR LSK + DNRILIA  G I  LV+LL S  D++ QE+ VT +LN
Sbjct: 351 SSQSIEDRRTAVSEIRSLSKRSTDNRILIAEAGAIPVLVKLLTSDGDTETQENAVTCILN 410

Query: 430 LSLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPP 489
           LS+ E NK  I   GA+ +I+ +L+ G+ EAREN+AA LFSLS+ DEN++++G    I  
Sbjct: 411 LSIYEHNKELIMLAGAVTSIVLVLRAGSMEARENAAATLFSLSLADENKIIIGASGAIMA 470

Query: 490 LVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALG-MVDEALS 548
           LV+LL+YGS+RGKKDAATALFNL I Q NK RA++AGI+  L+K+L D +   M DEAL+
Sbjct: 471 LVDLLQYGSVRGKKDAATALFNLCIYQGNKGRAVRAGIVKPLVKMLTDSSSERMADEALT 530

Query: 549 ILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQY 608
           IL +LAS+   +  I R + I  L++ ++   P+N+E A ++LL L   ++  +++  + 
Sbjct: 531 ILSVLASNQVAKTAILRANAIPPLIDCLQKDQPRNRENAAAILLCLCKRDTEKLISIGRL 590

Query: 609 GVYEHLVEITRCGTNRGQRKANSLLQHMSK 638
           G    L+E++R GT R +RKANSLL+ + K
Sbjct: 591 GAVVPLMELSRDGTERAKRKANSLLELLRK 620

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8GUG9|PUB11_ARATH U-box domain-containing protein 11 OS=Arabidopsis thaliana GN=PUB11 PE=2 SV=2

 Score =  377 bits (969), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 236/595 (39%), Positives = 365/595 (61%), Gaps = 21/595 (3%)

Query: 51  RKECLNMVRRLKLLVPLLEEIRE---LDGQVSSEALN-CLANLKKPLLAAKKLLKDCNYG 106
           +K+C ++ RR+ LL  LLEEIR+   +D   SS + N   ++L   L AAK+LL    + 
Sbjct: 29  KKDCADLTRRVCLLTHLLEEIRDSTPIDSAASSSSENDWWSDLVVGLQAAKRLLSTARFQ 88

Query: 107 SKIYLAAESEAVMSRFHAVYDKLYEALDDVPYDELGISDEVKEQVELMRMQLQRAKGRTD 166
           ++      ++ +  +F  V  KL +AL ++PYD   ISDEV EQVEL R QL+RA  R  
Sbjct: 89  ARDSSDGAAKRISFQFQCVTWKLEKALSNLPYDLYDISDEVGEQVELARSQLRRAMQRYG 148

Query: 167 TQDMELAMDMMVVFSKEDDRNADSAILERLAKKLELHTIADLKAETLAVRKLVKERGGHK 226
           + +   +       S+  +R+  S +++  A++ +L +++    ETL   +  +++    
Sbjct: 149 SLN---SNKFSSALSEPMERDGFSNVIKIKAEE-KLESVS----ETLHFGEEEEKQSSPP 200

Query: 227 ADSISQITDLLGKFKQIAGVEDTLVLDGSVS--ARKLQRCQTMLVPHEFLCPVTLEIMTD 284
               S I+  L  +  ++   DT  LD  V+    + ++   + +P +FLCPV+LE+M D
Sbjct: 201 LRRSSSIS--LAYY--LSKDADTDRLDKMVNKNTDESKKSDKLTIPVDFLCPVSLELMKD 256

Query: 285 PVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLIVQWCEKNNVELP 344
           PVIVATGQTYER  IQRW++  + TCPKT Q L++ +L PNY LR+LI +WC ++N+E P
Sbjct: 257 PVIVATGQTYERAYIQRWIDCGNLTCPKTQQKLENFTLTPNYVLRSLISRWCAEHNIEQP 316

Query: 345 KKDTNTGSDASSAALIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGG 404
               N  +  S    +  I +L+Q LSS     +R++V +IR LSK + DNRILIA  G 
Sbjct: 317 AGYINGRTKNSGDMSV--IRALVQRLSSRSTEDRRNAVSEIRSLSKRSTDNRILIAEAGA 374

Query: 405 IRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTNEARENS 464
           I  LV LL+  D   QE+ +T +LNLS+ E NK  I   GA+ +I+++L+ GT EAREN+
Sbjct: 375 IPVLVNLLTSEDVATQENAITCVLNLSIYENNKELIMFAGAVTSIVQVLRAGTMEARENA 434

Query: 465 AAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIK 524
           AA LFSLS+ DEN++++G    IP LV+LL  G+ RGKKDAATALFNL I   NK RA++
Sbjct: 435 AATLFSLSLADENKIIIGGSGAIPALVDLLENGTPRGKKDAATALFNLCIYHGNKGRAVR 494

Query: 525 AGIIPSLLKLLEDKALG-MVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKN 583
           AGI+ +L+K+L D     MVDEAL+IL +LA++ + ++ I + + +  L+ I++    +N
Sbjct: 495 AGIVTALVKMLSDSTRHRMVDEALTILSVLANNQDAKSAIVKANTLPALIGILQTDQTRN 554

Query: 584 KECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK 638
           +E A ++LL L   ++  ++   + G    L+++++ GT RG+RKA SLL+ + K
Sbjct: 555 RENAAAILLSLCKRDTEKLITIGRLGAVVPLMDLSKNGTERGKRKAISLLELLRK 609

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9C7R6|PUB17_ARATH U-box domain-containing protein 17 OS=Arabidopsis thaliana GN=PUB17 PE=2 SV=1

 Score =  255 bits (652), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 188/579 (32%), Positives = 314/579 (54%), Gaps = 38/579 (6%)

Query: 96  AKKLLKDCNYGSKIYLAAESEAVMSRFHAVYDKLYEALDDVPYDELGISDEVKEQVELMR 155
           +K L+  C   SK++L  ++ ++   FH +  ++   LD +P ++LG+SD+++EQ+EL++
Sbjct: 117 SKILVDYCAQSSKLWLLLQNPSISGYFHDLNQEISTLLDVLPVNDLGLSDDIREQIELLQ 176

Query: 156 MQLQRAKGRTDTQDMELAMDMMVVFSKEDDRNADSAILERL--AKKLELHTIADLKAETL 213
            Q ++A+   D  D  L           ++    S++  R+   +KL +      ++E  
Sbjct: 177 RQSRKARLYIDKNDESLRESFYSFLDGFENGKIPSSVDLRMFFVEKLGIRDSKSCRSEIE 236

Query: 214 AVRKLVKERGGHKADSISQITDLLG-----KFKQIAGVEDTL---VLDGSVSARKLQRCQ 265
            + + +    G    + S I   +      +F      ED +   + +     RK    Q
Sbjct: 237 FLEEQIVNHDGDLEPTGSVINGFVAITRYCRFLLFGFEEDGMEWWIENNPKKPRKGFVAQ 296

Query: 266 -----TMLVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHL 320
                 + VP +F+CP++L++MTDPVI++TGQTY+R SI RW+   H TCPKTGQ+L   
Sbjct: 297 EIGDTFITVPKDFVCPISLDLMTDPVIISTGQTYDRNSIARWIEEGHCTCPKTGQMLMDS 356

Query: 321 SLAPNYALRNLIVQWCEKNNVELPKKDTNTGSDASSAALIEE---------ICSLIQNLS 371
            + PN AL+NLIVQWC  + +    + T++ +++ ++AL  +         +  LI+ L+
Sbjct: 357 RIVPNRALKNLIVQWCTASGISYESEFTDSPNESFASALPTKAAVEANKATVSILIKYLA 416

Query: 372 SSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLS 431
                 +  +  +IR+L+K   +NR  IA  G I  L +LL+  ++  QE++VTA+LNLS
Sbjct: 417 DGSQAAQTVAAREIRLLAKTGKENRAYIAEAGAIPHLCRLLTSENAIAQENSVTAMLNLS 476

Query: 432 LDETNKRHIAREG-AIPAIIEILQNG-TNEARENSAAALFSLSMLDENRVMVGNLN-GIP 488
           + E NK  I  EG  + +I+ +L +G T EA+EN+AA LFSLS + E +  +  ++  + 
Sbjct: 477 IYEKNKSRIMEEGDCLESIVSVLVSGLTVEAQENAAATLFSLSAVHEYKKRIAIVDQCVE 536

Query: 489 PLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALS 548
            L  LL+ G+ RGKKDA TAL+NLS +  N SR I+ G + SL+  L+++  G+ +EA  
Sbjct: 537 ALALLLQNGTPRGKKDAVTALYNLSTHPDNCSRMIEGGGVSSLVGALKNE--GVAEEAAG 594

Query: 549 ILQLLASHPEGRNEIGRL-SFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFIL---- 603
            L LL     G   IG+  S +  L+ +++ GTP+ KE A + LLEL  +    +     
Sbjct: 595 ALALLVRQSLGAEAIGKEDSAVAGLMGMMRCGTPRGKENAVAALLELCRSGGAAVAEKVL 654

Query: 604 -AALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSKREH 641
            A    G+ + L+     GT R +RKA SL +   +RE+
Sbjct: 655 RAPAIAGLLQTLL---FTGTKRARRKAASLARVFQRREN 690

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	643
225428265	641	PREDICTED: U-box domain-containing prote	0.984	0.987	0.770	0.0
297744493	677	unnamed protein product [Vitis vinifera]	0.984	0.935	0.770	0.0
255569666	655	E3 ubiquitin ligase PUB14, putative [Ric	0.956	0.938	0.767	0.0
147822389	639	hypothetical protein VITISV_002888 [Viti	0.933	0.938	0.696	0.0
224131860	615	predicted protein [Populus trichocarpa]	0.948	0.991	0.778	0.0
224104841	613	predicted protein [Populus trichocarpa]	0.948	0.995	0.766	0.0
449444594	645	PREDICTED: U-box domain-containing prote	0.975	0.972	0.710	0.0
449475901	645	PREDICTED: LOW QUALITY PROTEIN: U-box do	0.975	0.972	0.707	0.0
255539222	654	Spotted leaf protein, putative [Ricinus	0.967	0.951	0.685	0.0
224065687	639	predicted protein [Populus trichocarpa]	0.989	0.995	0.657	0.0

>gi|225428265|ref|XP_002279546.1| PREDICTED: U-box domain-containing protein 15 [Vitis vinifera]

 Score =  999 bits (2582), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/637 (77%), Positives = 561/637 (88%), Gaps = 4/637 (0%)

Query: 8   MEGATGENQNGVSSSLNECDRVVNELMQVIDTIGSYGGFRKTQRKECLNMVRRLKLLVPL 67
           MEG TGE  +   SS  E D V+ E+M+VI+ +GSY GFR+TQRKE LN+VRRLKLLVPL
Sbjct: 1   MEGETGEKGSVCGSS--EGD-VIGEMMEVIENVGSYVGFRRTQRKESLNLVRRLKLLVPL 57

Query: 68  LEEIRELD-GQVSSEALNCLANLKKPLLAAKKLLKDCNYGSKIYLAAESEAVMSRFHAVY 126
           LEE+REL    VS EAL CLA LKK L++AKKLLK+CNYGSKIYLA ESEAV  RFHAVY
Sbjct: 58  LEELRELGTAAVSGEALGCLARLKKALVSAKKLLKNCNYGSKIYLAHESEAVAVRFHAVY 117

Query: 127 DKLYEALDDVPYDELGISDEVKEQVELMRMQLQRAKGRTDTQDMELAMDMMVVFSKEDDR 186
           DKL +ALDD+PY++LGISDEVKEQVELMRMQL+RAK RT+TQD+ELAMD+MVVFSK DDR
Sbjct: 118 DKLNQALDDLPYNDLGISDEVKEQVELMRMQLKRAKRRTETQDIELAMDLMVVFSKTDDR 177

Query: 187 NADSAILERLAKKLELHTIADLKAETLAVRKLVKERGGHKADSISQITDLLGKFKQIAGV 246
           NAD+AILERLA KLEL T+ADLK ET+AVRKLVKER G  A++  QI +LLGKFK++AG+
Sbjct: 178 NADTAILERLASKLELRTVADLKVETVAVRKLVKERAGLSAEASQQIVELLGKFKKLAGM 237

Query: 247 EDTLVLDGSVSARKLQRCQTMLVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSN 306
           E++ VLDG V +R LQ+C ++++PHEFLCP++LEIMTDPVIVATGQTYERESIQ+WL+S+
Sbjct: 238 EESSVLDGPVLSRNLQKCPSLVIPHEFLCPISLEIMTDPVIVATGQTYERESIQKWLDSD 297

Query: 307 HKTCPKTGQILDHLSLAPNYALRNLIVQWCEKNNVELPKKDTNTGSDASSAALIEEICSL 366
           H TCPKTGQ L HLSLAPNYALRNLI+QWCEKN  ELP+KD   GS+ SS  + ++I SL
Sbjct: 298 HHTCPKTGQTLVHLSLAPNYALRNLILQWCEKNQFELPRKDIKAGSNGSSIQVKQKISSL 357

Query: 367 IQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTA 426
           +QNLSSSQ +++R ++MKIRML+KENPDNRI IAN GGI PLVQLLSYPDSK+QEHTVTA
Sbjct: 358 VQNLSSSQPDVQRKAIMKIRMLAKENPDNRIRIANRGGIPPLVQLLSYPDSKLQEHTVTA 417

Query: 427 LLNLSLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNG 486
           LLNLS+DE NKR IAREGAIPAIIEILQNGT+EARENSAAALFSLSMLDEN+VM+G+LNG
Sbjct: 418 LLNLSIDEANKRLIAREGAIPAIIEILQNGTDEARENSAAALFSLSMLDENKVMIGSLNG 477

Query: 487 IPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEA 546
           IPPLVNLL+ G+ RGKKDAATALFNLS+NQSNKSRAIKAGIIP+LL LLEDK LGM+DEA
Sbjct: 478 IPPLVNLLQNGTTRGKKDAATALFNLSLNQSNKSRAIKAGIIPALLHLLEDKNLGMIDEA 537

Query: 547 LSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAAL 606
           LSIL LL SHPEG+ EIGRLSFI TLVEI+K+GTPKNKECATSVLLELGLNNS FILAAL
Sbjct: 538 LSILLLLVSHPEGQTEIGRLSFIVTLVEIMKDGTPKNKECATSVLLELGLNNSSFILAAL 597

Query: 607 QYGVYEHLVEITRCGTNRGQRKANSLLQHMSKREHIP 643
           QYGVY+HLVEI RCGTNR QRKAN LLQHM K EHIP
Sbjct: 598 QYGVYDHLVEIMRCGTNRAQRKANCLLQHMCKCEHIP 634

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744493|emb|CBI37755.3| unnamed protein product [Vitis vinifera]

 Score =  998 bits (2581), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/637 (77%), Positives = 561/637 (88%), Gaps = 4/637 (0%)

Query: 8   MEGATGENQNGVSSSLNECDRVVNELMQVIDTIGSYGGFRKTQRKECLNMVRRLKLLVPL 67
           MEG TGE  +   SS  E D V+ E+M+VI+ +GSY GFR+TQRKE LN+VRRLKLLVPL
Sbjct: 1   MEGETGEKGSVCGSS--EGD-VIGEMMEVIENVGSYVGFRRTQRKESLNLVRRLKLLVPL 57

Query: 68  LEEIREL-DGQVSSEALNCLANLKKPLLAAKKLLKDCNYGSKIYLAAESEAVMSRFHAVY 126
           LEE+REL    VS EAL CLA LKK L++AKKLLK+CNYGSKIYLA ESEAV  RFHAVY
Sbjct: 58  LEELRELGTAAVSGEALGCLARLKKALVSAKKLLKNCNYGSKIYLAHESEAVAVRFHAVY 117

Query: 127 DKLYEALDDVPYDELGISDEVKEQVELMRMQLQRAKGRTDTQDMELAMDMMVVFSKEDDR 186
           DKL +ALDD+PY++LGISDEVKEQVELMRMQL+RAK RT+TQD+ELAMD+MVVFSK DDR
Sbjct: 118 DKLNQALDDLPYNDLGISDEVKEQVELMRMQLKRAKRRTETQDIELAMDLMVVFSKTDDR 177

Query: 187 NADSAILERLAKKLELHTIADLKAETLAVRKLVKERGGHKADSISQITDLLGKFKQIAGV 246
           NAD+AILERLA KLEL T+ADLK ET+AVRKLVKER G  A++  QI +LLGKFK++AG+
Sbjct: 178 NADTAILERLASKLELRTVADLKVETVAVRKLVKERAGLSAEASQQIVELLGKFKKLAGM 237

Query: 247 EDTLVLDGSVSARKLQRCQTMLVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSN 306
           E++ VLDG V +R LQ+C ++++PHEFLCP++LEIMTDPVIVATGQTYERESIQ+WL+S+
Sbjct: 238 EESSVLDGPVLSRNLQKCPSLVIPHEFLCPISLEIMTDPVIVATGQTYERESIQKWLDSD 297

Query: 307 HKTCPKTGQILDHLSLAPNYALRNLIVQWCEKNNVELPKKDTNTGSDASSAALIEEICSL 366
           H TCPKTGQ L HLSLAPNYALRNLI+QWCEKN  ELP+KD   GS+ SS  + ++I SL
Sbjct: 298 HHTCPKTGQTLVHLSLAPNYALRNLILQWCEKNQFELPRKDIKAGSNGSSIQVKQKISSL 357

Query: 367 IQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTA 426
           +QNLSSSQ +++R ++MKIRML+KENPDNRI IAN GGI PLVQLLSYPDSK+QEHTVTA
Sbjct: 358 VQNLSSSQPDVQRKAIMKIRMLAKENPDNRIRIANRGGIPPLVQLLSYPDSKLQEHTVTA 417

Query: 427 LLNLSLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNG 486
           LLNLS+DE NKR IAREGAIPAIIEILQNGT+EARENSAAALFSLSMLDEN+VM+G+LNG
Sbjct: 418 LLNLSIDEANKRLIAREGAIPAIIEILQNGTDEARENSAAALFSLSMLDENKVMIGSLNG 477

Query: 487 IPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEA 546
           IPPLVNLL+ G+ RGKKDAATALFNLS+NQSNKSRAIKAGIIP+LL LLEDK LGM+DEA
Sbjct: 478 IPPLVNLLQNGTTRGKKDAATALFNLSLNQSNKSRAIKAGIIPALLHLLEDKNLGMIDEA 537

Query: 547 LSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAAL 606
           LSIL LL SHPEG+ EIGRLSFI TLVEI+K+GTPKNKECATSVLLELGLNNS FILAAL
Sbjct: 538 LSILLLLVSHPEGQTEIGRLSFIVTLVEIMKDGTPKNKECATSVLLELGLNNSSFILAAL 597

Query: 607 QYGVYEHLVEITRCGTNRGQRKANSLLQHMSKREHIP 643
           QYGVY+HLVEI RCGTNR QRKAN LLQHM K EHIP
Sbjct: 598 QYGVYDHLVEIMRCGTNRAQRKANCLLQHMCKCEHIP 634

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569666|ref|XP_002525798.1| E3 ubiquitin ligase PUB14, putative [Ricinus communis] gi|223534885|gb|EEF36572.1| E3 ubiquitin ligase PUB14, putative [Ricinus communis]

 Score =  954 bits (2466), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 472/615 (76%), Positives = 547/615 (88%)

Query: 29  VVNELMQVIDTIGSYGGFRKTQRKECLNMVRRLKLLVPLLEEIRELDGQVSSEALNCLAN 88
           +V +++  I+T+GSY G+R+TQ+KECLN+VRRLKLLVPLLEEI+E D  VS+++L+CL+N
Sbjct: 41  MVRDMIDCIETVGSYPGYRRTQKKECLNLVRRLKLLVPLLEEIKETDKLVSTDSLSCLSN 100

Query: 89  LKKPLLAAKKLLKDCNYGSKIYLAAESEAVMSRFHAVYDKLYEALDDVPYDELGISDEVK 148
           LKK LLAAKKLLK C++GSKIYLA ESEAV+  FHAVYDKL ++LDD+PY+E GIS EVK
Sbjct: 101 LKKALLAAKKLLKKCSFGSKIYLALESEAVICSFHAVYDKLSQSLDDMPYNEFGISIEVK 160

Query: 149 EQVELMRMQLQRAKGRTDTQDMELAMDMMVVFSKEDDRNADSAILERLAKKLELHTIADL 208
           EQVELMR QL+RAK RTDTQD+ELAMD+MVVFS  DDR+ DSAILERLA KLEL+TIADL
Sbjct: 161 EQVELMRTQLRRAKRRTDTQDIELAMDIMVVFSTRDDRDVDSAILERLANKLELYTIADL 220

Query: 209 KAETLAVRKLVKERGGHKADSISQITDLLGKFKQIAGVEDTLVLDGSVSARKLQRCQTML 268
           KAET+AVRKL+K+R    A+SI QITDLLGKFKQIAGV + + LDG VS++ L +CQ+++
Sbjct: 221 KAETVAVRKLIKQRDVQNAESIQQITDLLGKFKQIAGVHENIELDGPVSSKTLHKCQSLI 280

Query: 269 VPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYAL 328
           +PHEFLCP+TLEIM DPVIVATGQTYERESI+RWLNSNH+TCPKTGQ+LDHLSLAPN+AL
Sbjct: 281 IPHEFLCPITLEIMVDPVIVATGQTYERESIKRWLNSNHRTCPKTGQMLDHLSLAPNFAL 340

Query: 329 RNLIVQWCEKNNVELPKKDTNTGSDASSAALIEEICSLIQNLSSSQLNIKRDSVMKIRML 388
           RNLI+QWCEKNN ELPK+D   G D S A L+EEICSL+QNLSSS+L++ R +++KIRML
Sbjct: 341 RNLILQWCEKNNFELPKRDAFVGYDGSPAELVEEICSLVQNLSSSELDVLRGAIVKIRML 400

Query: 389 SKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPA 448
           SKENPDNR+LIAN+G I PLV+LLSY DS +QE TVTALLNLS+DE NKR IAR GAIP 
Sbjct: 401 SKENPDNRVLIANSGAIPPLVRLLSYHDSVVQEQTVTALLNLSIDEANKRLIARLGAIPP 460

Query: 449 IIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATA 508
           IIEILQNGT EARENSAAALFSLSMLDEN+ +VG LNGIPPLVNLL+ G+IRGKKDAATA
Sbjct: 461 IIEILQNGTEEARENSAAALFSLSMLDENKALVGILNGIPPLVNLLQNGTIRGKKDAATA 520

Query: 509 LFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSF 568
           LFNLS+NQ+NK RAIKAGIIP+LL+LLE+K + M+DEALSIL LL S+PEGR EIGRLSF
Sbjct: 521 LFNLSLNQTNKFRAIKAGIIPALLQLLENKDVSMIDEALSILLLLTSNPEGRGEIGRLSF 580

Query: 569 IETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRK 628
           I TLVEII++GTPKNKECA SVLLELGLNNS FILAALQYGVYEHLVEITR GTNR QRK
Sbjct: 581 IRTLVEIIRSGTPKNKECAASVLLELGLNNSSFILAALQYGVYEHLVEITRSGTNRAQRK 640

Query: 629 ANSLLQHMSKREHIP 643
           ANSLLQHMSK EHIP
Sbjct: 641 ANSLLQHMSKCEHIP 655

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147822389|emb|CAN59900.1| hypothetical protein VITISV_002888 [Vitis vinifera]

 Score =  917 bits (2371), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 465/668 (69%), Positives = 531/668 (79%), Gaps = 68/668 (10%)

Query: 8   MEGATGENQNGVSSSLNECDRVVNELMQVIDTIGSYGGFRKTQRKECLNMVRRLKLLVPL 67
           MEG TGE  +   SS  E D V+ E+M+VI+ +GSY GFR+TQRKE LN+VRRLKLLVPL
Sbjct: 1   MEGETGEKGSVCGSS--EGD-VIGEMMEVIENVGSYVGFRRTQRKESLNLVRRLKLLVPL 57

Query: 68  LEEIRELDGQVSSEALNCLANLKKPLLAAKKLLKDCNYGSKIYLAAESEAVMSRFHAVYD 127
           LEE+REL                                     A ESEAV  RFHAVYD
Sbjct: 58  LEELRELGTAA---------------------------------AHESEAVAVRFHAVYD 84

Query: 128 KLYEALDDVPYDELGISDEVKEQVELMRMQLQRAKGRTDTQDMELAMDMMVVFSKEDDRN 187
           KL +ALDD+PY++LGISDEVKEQVELMRMQL+RAK RT+TQD+ELAMD+MVVFSK DDRN
Sbjct: 85  KLNQALDDLPYNDLGISDEVKEQVELMRMQLKRAKRRTETQDIELAMDLMVVFSKTDDRN 144

Query: 188 ADSAILERLAKKLELHTIADLKAETLAVRKLVKERGGHKADSISQITDLLGKFKQIAGVE 247
           AD+AILERLA KLEL T+ADLK ET+AVRKLVKER G  A++  QI +LLGKFK++AG+E
Sbjct: 145 ADTAILERLASKLELRTVADLKVETVAVRKLVKERAGLSAEASQQIVELLGKFKKLAGME 204

Query: 248 DTLVLDGSVSARKLQRCQTMLVPHEFLCPVTLEIMTDPVIVATGQ--------------- 292
           ++ VLDG V +R LQ+C ++++PHEFLCP++LEIMTDPVIVATGQ               
Sbjct: 205 ESSVLDGPVLSRNLQKCPSLVIPHEFLCPISLEIMTDPVIVATGQVISYELYESFCVILA 264

Query: 293 -----------------TYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLIVQW 335
                            TYERESIQ+WL+S+H TCPKTGQ L HLSLAPNYALRNLI+QW
Sbjct: 265 MLSTVIQSDILFPGILKTYERESIQKWLDSDHHTCPKTGQTLVHLSLAPNYALRNLILQW 324

Query: 336 CEKNNVELPKKDTNTGSDASSAALIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDN 395
           CEKN  ELP+KD   GS+ SS  + ++I SL+QNLSSSQ +++R ++MKIRML+KENPDN
Sbjct: 325 CEKNQFELPRKDIKAGSNGSSIQVKQKISSLVQNLSSSQPDVQRKAIMKIRMLAKENPDN 384

Query: 396 RILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQN 455
           RI IAN GGI PLVQLLSYPDSK+QEHTVTALLNLS+DE NKR IAREGAIPAIIEILQN
Sbjct: 385 RIRIANRGGIPPLVQLLSYPDSKLQEHTVTALLNLSIDEANKRLIAREGAIPAIIEILQN 444

Query: 456 GTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSIN 515
           GT+EARENSAAALFSLSMLDEN+VM+G+LNGIPPLVNLL+ G+ RGKKDAATALFNLS+N
Sbjct: 445 GTDEARENSAAALFSLSMLDENKVMIGSLNGIPPLVNLLQNGTTRGKKDAATALFNLSLN 504

Query: 516 QSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEI 575
           QSNKSRAIKAGIIP+LL LLEDK LGM+DEALSIL LL SHPEGR EIGRLSFI TLVEI
Sbjct: 505 QSNKSRAIKAGIIPALLHLLEDKNLGMIDEALSILLLLVSHPEGRTEIGRLSFIVTLVEI 564

Query: 576 IKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQH 635
           +K+GTPKNKECATSVLLELGLNNS FILAALQYGVY+HLVEI RCGTNR QRKAN LLQH
Sbjct: 565 MKDGTPKNKECATSVLLELGLNNSSFILAALQYGVYDHLVEIMRCGTNRAQRKANCLLQH 624

Query: 636 MSKREHIP 643
           M K EHIP
Sbjct: 625 MCKCEHIP 632

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131860|ref|XP_002328126.1| predicted protein [Populus trichocarpa] gi|222837641|gb|EEE76006.1| predicted protein [Populus trichocarpa]

 Score =  914 bits (2361), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/613 (77%), Positives = 537/613 (87%), Gaps = 3/613 (0%)

Query: 29  VVNELMQVIDTIGSYGGFRKTQRKECLNMVRRLKLLVPLLEEIRELDGQ--VSSEAL-NC 85
           VV E+M VI+T+G Y G+R+TQRKECLN+VRRLKLLVPLLEEI+E+D     SSE L   
Sbjct: 3   VVKEMMDVIETVGLYVGYRRTQRKECLNLVRRLKLLVPLLEEIKEIDHHKLSSSEGLKTS 62

Query: 86  LANLKKPLLAAKKLLKDCNYGSKIYLAAESEAVMSRFHAVYDKLYEALDDVPYDELGISD 145
           L NLKK LL AKKLLK C+ GSKIYLA ESEAVMS FHAVYD L +ALDD+ YDELGIS 
Sbjct: 63  LVNLKKALLGAKKLLKKCSCGSKIYLAMESEAVMSSFHAVYDHLNQALDDLQYDELGISV 122

Query: 146 EVKEQVELMRMQLQRAKGRTDTQDMELAMDMMVVFSKEDDRNADSAILERLAKKLELHTI 205
           EVKEQVEL RMQL+RAK RTDTQD+ELAMDMMVVFSK+DDRNADSAILERLA KLELHTI
Sbjct: 123 EVKEQVELTRMQLKRAKRRTDTQDIELAMDMMVVFSKKDDRNADSAILERLASKLELHTI 182

Query: 206 ADLKAETLAVRKLVKERGGHKADSISQITDLLGKFKQIAGVEDTLVLDGSVSARKLQRCQ 265
           +DLKAE +AVRKLVK+RG   A+SI QI D LGKF+ IAGV++T+ LDG +S++ LQ+CQ
Sbjct: 183 SDLKAEEVAVRKLVKQRGVQNAESIQQIKDFLGKFRHIAGVDETIDLDGPISSKSLQKCQ 242

Query: 266 TMLVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPN 325
           ++L+PHEFLCP+TLEIM DPVIVA+GQTYERESIQ+WLNSNH+TCPKTGQILDHLSLAPN
Sbjct: 243 SLLIPHEFLCPITLEIMVDPVIVASGQTYERESIQKWLNSNHRTCPKTGQILDHLSLAPN 302

Query: 326 YALRNLIVQWCEKNNVELPKKDTNTGSDASSAALIEEICSLIQNLSSSQLNIKRDSVMKI 385
           +ALRNLI+QWCEKN  ELPKKD+   SD  SA  IEEI   +QNLSS +  ++R++VM I
Sbjct: 303 FALRNLILQWCEKNKYELPKKDSCLRSDGFSAESIEEISFFVQNLSSHEFEVRREAVMNI 362

Query: 386 RMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGA 445
           RML+KENP NRILIAN GGI PLVQLLSY DSKIQEHTVTALLNLS+DETNKR +AREGA
Sbjct: 363 RMLAKENPGNRILIANYGGIPPLVQLLSYQDSKIQEHTVTALLNLSIDETNKRLVAREGA 422

Query: 446 IPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDA 505
           IPAIIEILQNGT+EARENSAAALFSLSMLDEN+V++G L GI PLV LL+ G++RGKKDA
Sbjct: 423 IPAIIEILQNGTDEARENSAAALFSLSMLDENKVLIGALKGIRPLVYLLQNGTVRGKKDA 482

Query: 506 ATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGR 565
           ATALFNLS+NQ+NKSRAIKAGIIP+LL LLE+  LGM+DEALSIL LLASHPEGRNEIGR
Sbjct: 483 ATALFNLSLNQTNKSRAIKAGIIPALLCLLEENNLGMIDEALSILLLLASHPEGRNEIGR 542

Query: 566 LSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRG 625
           LSFIETLV II+NGTPKNKECA SVLLELGLNNS  ILAALQYGVYEHL E+T+ GTNR 
Sbjct: 543 LSFIETLVGIIRNGTPKNKECAASVLLELGLNNSSIILAALQYGVYEHLAELTKNGTNRA 602

Query: 626 QRKANSLLQHMSK 638
           QRKANSLLQHMSK
Sbjct: 603 QRKANSLLQHMSK 615

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104841|ref|XP_002313587.1| predicted protein [Populus trichocarpa] gi|222849995|gb|EEE87542.1| predicted protein [Populus trichocarpa]

 Score =  903 bits (2334), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 470/613 (76%), Positives = 538/613 (87%), Gaps = 3/613 (0%)

Query: 29  VVNELMQVIDTIGSYGGFRKTQRKECLNMVRRLKLLVPLLEEIRELDGQ--VSSEAL-NC 85
           VV E+M VI+ +G Y G+R+TQRKECLN+ RRLKLL+PLLEEI+E+     VSSE L   
Sbjct: 1   VVVEMMDVIEAVGLYVGYRRTQRKECLNLARRLKLLLPLLEEIKEIGNYKLVSSEGLKTS 60

Query: 86  LANLKKPLLAAKKLLKDCNYGSKIYLAAESEAVMSRFHAVYDKLYEALDDVPYDELGISD 145
           L NLKK LL AKKLLK C+ GSKIYLA ESEAVMS FHAVY+KL +ALDD+PYDELGIS 
Sbjct: 61  LDNLKKALLGAKKLLKKCSCGSKIYLAMESEAVMSSFHAVYEKLNQALDDLPYDELGISV 120

Query: 146 EVKEQVELMRMQLQRAKGRTDTQDMELAMDMMVVFSKEDDRNADSAILERLAKKLELHTI 205
           EVKEQVEL RMQL+RAK R+DTQD+ELAMD+MVVFSK+DDRNADSAILERLA KLELH I
Sbjct: 121 EVKEQVELTRMQLKRAKKRSDTQDIELAMDLMVVFSKKDDRNADSAILERLAIKLELHAI 180

Query: 206 ADLKAETLAVRKLVKERGGHKADSISQITDLLGKFKQIAGVEDTLVLDGSVSARKLQRCQ 265
            DLKAE +AVRKLVKERG   A+S+ QI DLLGKFKQIAGV++T+VLDG  S++ LQRC+
Sbjct: 181 PDLKAEEIAVRKLVKERGVQNAESMQQINDLLGKFKQIAGVDETIVLDGPFSSKSLQRCR 240

Query: 266 TMLVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPN 325
           ++L+PHEFLCP+TLEIM DPVIVATGQTYERESIQ+WLNSNH+TCPKTGQ L HLSLA N
Sbjct: 241 SLLIPHEFLCPITLEIMVDPVIVATGQTYERESIQKWLNSNHRTCPKTGQTLGHLSLASN 300

Query: 326 YALRNLIVQWCEKNNVELPKKDTNTGSDASSAALIEEICSLIQNLSSSQLNIKRDSVMKI 385
           +ALRNLI +WCEKNN ELPKKD   GSD  SA L EEI SL+QNLSS +  ++R+++ KI
Sbjct: 301 FALRNLIQEWCEKNNYELPKKDACLGSDGVSAELKEEISSLVQNLSSCEFEVRREAIKKI 360

Query: 386 RMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGA 445
           RML+KENPDNRILIAN GGI PLVQLLSY D  IQEHTVTALLNLS+DETNK+ +AREGA
Sbjct: 361 RMLAKENPDNRILIANYGGIPPLVQLLSYQDPNIQEHTVTALLNLSIDETNKKLVAREGA 420

Query: 446 IPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDA 505
           IPAI++ILQ+GTNEARENSAAALFSLSMLDEN+V++G  NGI PLV+LL+ G+IRGKKDA
Sbjct: 421 IPAIVKILQHGTNEARENSAAALFSLSMLDENKVLIGASNGIRPLVHLLQNGTIRGKKDA 480

Query: 506 ATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGR 565
           ATALFNLS+NQ+NKSRAIKAGIIP+LL LLE+K LGM+DEALSI  LLASHPEGRNEIG+
Sbjct: 481 ATALFNLSLNQTNKSRAIKAGIIPALLHLLEEKNLGMIDEALSIFLLLASHPEGRNEIGK 540

Query: 566 LSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRG 625
           LSFI+TLVEII+NGTPKNKECA SVLL+LGL+NS  ILAALQYGVYEHLVE+T+ GTNR 
Sbjct: 541 LSFIKTLVEIIRNGTPKNKECALSVLLQLGLHNSSIILAALQYGVYEHLVELTKSGTNRA 600

Query: 626 QRKANSLLQHMSK 638
           QRKANS+LQHMSK
Sbjct: 601 QRKANSILQHMSK 613

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444594|ref|XP_004140059.1| PREDICTED: U-box domain-containing protein 15-like [Cucumis sativus]

 Score =  886 bits (2289), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/628 (71%), Positives = 531/628 (84%), Gaps = 1/628 (0%)

Query: 17  NGVSSSLNECDRVVNELMQVIDTIGSYGGFRKTQRKECLNMVRRLKLLVPLLEEIRELDG 76
           NGV     +  + + E  ++I+ IG++ GFRKTQ KECLN+VRRLK+LVPLLEEIR+L  
Sbjct: 18  NGVLQETVDVTKCLTEANELIEAIGAFSGFRKTQSKECLNLVRRLKMLVPLLEEIRDLHD 77

Query: 77  QVSSEALNC-LANLKKPLLAAKKLLKDCNYGSKIYLAAESEAVMSRFHAVYDKLYEALDD 135
            + +EAL+  ++ LK+ L+ AK+LLK+C+ GSKIYLA E+EAVM+RFH VYDKL EALD 
Sbjct: 78  MLPAEALSSHISLLKEALVLAKRLLKNCHNGSKIYLAFENEAVMARFHVVYDKLKEALDG 137

Query: 136 VPYDELGISDEVKEQVELMRMQLQRAKGRTDTQDMELAMDMMVVFSKEDDRNADSAILER 195
           +PYDELG+S E+KEQVELM  QL+RAK R DTQDMELAMDMMVVFSK D+RNAD  ILER
Sbjct: 138 IPYDELGVSVELKEQVELMSTQLKRAKCRKDTQDMELAMDMMVVFSKNDERNADPVILER 197

Query: 196 LAKKLELHTIADLKAETLAVRKLVKERGGHKADSISQITDLLGKFKQIAGVEDTLVLDGS 255
           LA KLEL  IADL+AET+AV+KLV+ RG   ++S+ QI DLL KFKQIAG+++ +  DG 
Sbjct: 198 LANKLELRKIADLEAETIAVQKLVRHRGVPNSESLQQIIDLLRKFKQIAGMDNNVAPDGP 257

Query: 256 VSARKLQRCQTMLVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQ 315
           V ++ LQRC++ L+PHEFLCP+TLEIMTDPVIVATGQTY+RESIQ+WLNSNH+TCPK+GQ
Sbjct: 258 VVSKSLQRCKSTLIPHEFLCPITLEIMTDPVIVATGQTYDRESIQKWLNSNHRTCPKSGQ 317

Query: 316 ILDHLSLAPNYALRNLIVQWCEKNNVELPKKDTNTGSDASSAALIEEICSLIQNLSSSQL 375
            L HLSLAPNYAL+NLI+QWC+KNN ELPKK+   G   + + L  EI SL+ NLSSSQL
Sbjct: 318 TLVHLSLAPNYALKNLILQWCQKNNYELPKKEVVAGMGDTPSDLAGEISSLVHNLSSSQL 377

Query: 376 NIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDET 435
           +I+R++++KIR+LSKENP+NR+ IAN+G I PLV+LLSYPD   QEHTVTALLNLS+D++
Sbjct: 378 DIQREAIIKIRVLSKENPENRVWIANSGVIPPLVKLLSYPDLNFQEHTVTALLNLSIDDS 437

Query: 436 NKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLR 495
           NKR IAREGAIPAIIEILQ GT EA+ENSAAALFSLSMLDEN+V++G+L GIPPLV LLR
Sbjct: 438 NKRLIAREGAIPAIIEILQRGTEEAKENSAAALFSLSMLDENKVLIGSLKGIPPLVLLLR 497

Query: 496 YGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLAS 555
            G+IRGKKDAATALFNLS+NQ+NKSRAIKAGII  LL LLEDK LGMVDEALSIL LLAS
Sbjct: 498 DGTIRGKKDAATALFNLSLNQANKSRAIKAGIIQPLLALLEDKNLGMVDEALSILLLLAS 557

Query: 556 HPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLV 615
           HPEGR+EIG  SFIE LV II +GTPKNKECATS+LLELG NNS  IL ALQ+GVYEHLV
Sbjct: 558 HPEGRSEIGNNSFIEILVNIIIDGTPKNKECATSLLLELGRNNSPSILVALQFGVYEHLV 617

Query: 616 EITRCGTNRGQRKANSLLQHMSKREHIP 643
           E+TRCGT+R QRKA SLLQ+MSK EHIP
Sbjct: 618 ELTRCGTSRAQRKATSLLQYMSKCEHIP 645

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449475901|ref|XP_004154583.1| PREDICTED: LOW QUALITY PROTEIN: U-box domain-containing protein 15-like [Cucumis sativus]

 Score =  882 bits (2279), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/628 (70%), Positives = 529/628 (84%), Gaps = 1/628 (0%)

Query: 17  NGVSSSLNECDRVVNELMQVIDTIGSYGGFRKTQRKECLNMVRRLKLLVPLLEEIRELDG 76
           NGV     +  + + E  ++I+ IG++ GFRKTQ KECLN+VRRLK+LVPLLEEIR+L  
Sbjct: 18  NGVLQETVDVTKCLTEANELIEAIGAFSGFRKTQSKECLNLVRRLKMLVPLLEEIRDLHD 77

Query: 77  QVSSEALNC-LANLKKPLLAAKKLLKDCNYGSKIYLAAESEAVMSRFHAVYDKLYEALDD 135
            + +EAL+  ++ LK+ L+ AK+LLK+C+ GSKIYLA E+EAVM+RFH VYDKL EALD 
Sbjct: 78  MLPAEALSSHISLLKEALVLAKRLLKNCHNGSKIYLAFENEAVMARFHVVYDKLKEALDG 137

Query: 136 VPYDELGISDEVKEQVELMRMQLQRAKGRTDTQDMELAMDMMVVFSKEDDRNADSAILER 195
           +PYDELG+S E+KEQVELM  QL+RAK R DTQDMELAMDMMVVF   D+RNAD  ILER
Sbjct: 138 IPYDELGVSVELKEQVELMSTQLKRAKCRKDTQDMELAMDMMVVFQXNDERNADPVILER 197

Query: 196 LAKKLELHTIADLKAETLAVRKLVKERGGHKADSISQITDLLGKFKQIAGVEDTLVLDGS 255
           LA KLEL  IADL+AET+AV+KLV+ RG   ++S+ QI DLL KFKQIAG+++ +  DG 
Sbjct: 198 LANKLELRKIADLEAETIAVQKLVRHRGVPNSESLQQIIDLLRKFKQIAGMDNNVAPDGP 257

Query: 256 VSARKLQRCQTMLVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQ 315
           V ++ LQRC++ L+PHEFLCP+TLEIMTDPVIVATGQTY+RESIQ+WLNSNH+TCPK+GQ
Sbjct: 258 VVSKSLQRCKSTLIPHEFLCPITLEIMTDPVIVATGQTYDRESIQKWLNSNHRTCPKSGQ 317

Query: 316 ILDHLSLAPNYALRNLIVQWCEKNNVELPKKDTNTGSDASSAALIEEICSLIQNLSSSQL 375
            L HLSLAPNYAL+NLI+QWC+KNN ELPKK+   G   + + L  EI SL+ NLSSSQL
Sbjct: 318 TLVHLSLAPNYALKNLILQWCQKNNYELPKKEVVAGMGDTPSDLAGEISSLVHNLSSSQL 377

Query: 376 NIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDET 435
           +I+R++++KIR+LSKENP+NR+ IAN+G I PLV+LLSYPD   QEHTVTALLNLS+D++
Sbjct: 378 DIQREAIIKIRVLSKENPENRVWIANSGVIPPLVKLLSYPDLNFQEHTVTALLNLSIDDS 437

Query: 436 NKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLR 495
           NKR IAREGAIPAIIEILQ GT EA+ENSAAALFSLSMLDEN+V++G+L GIPPLV LLR
Sbjct: 438 NKRLIAREGAIPAIIEILQRGTEEAKENSAAALFSLSMLDENKVLIGSLKGIPPLVLLLR 497

Query: 496 YGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLAS 555
            G+IRGKKDAATALFNLS+NQ+NKSRAIKAGII  LL LLEDK LGMVDEALSIL LLAS
Sbjct: 498 DGTIRGKKDAATALFNLSLNQANKSRAIKAGIIQPLLALLEDKNLGMVDEALSILLLLAS 557

Query: 556 HPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLV 615
           HPEGR+EIG  SFIE LV II +GTPKNKECATS+LLELG NNS  IL ALQ+GVYEHLV
Sbjct: 558 HPEGRSEIGNNSFIEILVNIIIDGTPKNKECATSLLLELGRNNSPSILVALQFGVYEHLV 617

Query: 616 EITRCGTNRGQRKANSLLQHMSKREHIP 643
           E+TRCGT+R QRKA SLLQ+MSK EHIP
Sbjct: 618 ELTRCGTSRAQRKATSLLQYMSKCEHIP 645

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539222|ref|XP_002510676.1| Spotted leaf protein, putative [Ricinus communis] gi|223551377|gb|EEF52863.1| Spotted leaf protein, putative [Ricinus communis]

 Score =  873 bits (2255), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/623 (68%), Positives = 516/623 (82%), Gaps = 1/623 (0%)

Query: 20  SSSLNECDRVVNELMQVIDTIGSYGGFRKTQRKECLNMVRRLKLLVPLLEEIRELDGQVS 79
           +SS  E   ++ ++  +++++   G +R+  RK+C ++VRR+KLL+P LEE+R+LD    
Sbjct: 33  ASSPREETDILQQISNLVESVAQLGDYRRAHRKDCFSLVRRMKLLLPFLEELRDLDAPSP 92

Query: 80  SEALNCLANLKKPLLAAKKLLKDCNYGSKIYLAAESEAVMSRFHAVYDKLYEALDDVPYD 139
            + + CL++LKK  + A+KLLK CN GSKI LA ESEAVM +F  V DKLY+AL+ VPYD
Sbjct: 93  DKGITCLSSLKKAFILAEKLLKLCNEGSKINLAVESEAVMVKFRKVNDKLYQALNSVPYD 152

Query: 140 ELGISDEVKEQVELMRMQLQRAKGRTDTQDMELAMDMMVVFSKEDDRNADSAILERLAKK 199
           ELGISDEVKEQ+ELMRMQL+RAKGRTDTQD+ELAMDMMVV SKEDDRNADSAI+ERLAKK
Sbjct: 153 ELGISDEVKEQMELMRMQLKRAKGRTDTQDIELAMDMMVVLSKEDDRNADSAIIERLAKK 212

Query: 200 LELHTIADLKAETLAVRKLVKERGGHKADSISQITDLLGKFKQIAGVEDTLVLDGSVSAR 259
           LELHT+ DL  ET+A+R LVK+RGGH +++I QI DLL KF+QI G+E T   D  V  R
Sbjct: 213 LELHTVEDLNNETIAIRNLVKQRGGHISENIQQIIDLLNKFQQIIGMEVTDFQDNPVMHR 272

Query: 260 KLQRCQTMLVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDH 319
            L++C ++++PHEFLCP+TLEIMTDPVI+A+GQTYERESIQ+W  SNH+TCPKT Q L H
Sbjct: 273 TLEKCPSLVIPHEFLCPITLEIMTDPVIIASGQTYERESIQKWFVSNHRTCPKTRQTLAH 332

Query: 320 LSLAPNYALRNLIVQWCEKNNVELPKKDTNTGSDASSAALIEEICSLIQNLSSSQLNIKR 379
           LS+APNYAL+NLI+QWCE+NN  L  K+++  S  S + L EEI SL+ +LSSSQL ++R
Sbjct: 333 LSVAPNYALKNLILQWCEENNFHLSTKNSSASS-ESFSDLSEEILSLVHDLSSSQLEVQR 391

Query: 380 DSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRH 439
            SV KIRMLSKENP+NRI IAN+GGI PLVQ+LSYPDSKIQEH VTALLNLS+DETNKR 
Sbjct: 392 KSVKKIRMLSKENPENRIAIANHGGIPPLVQILSYPDSKIQEHAVTALLNLSIDETNKRL 451

Query: 440 IAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSI 499
           IAREGA+PAIIE+L++G+ E RENSAAALFSLSMLDEN+V +G  +GIPPLVNLL  G++
Sbjct: 452 IAREGAVPAIIEVLRSGSVEGRENSAAALFSLSMLDENKVTIGLSDGIPPLVNLLENGTV 511

Query: 500 RGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEG 559
           RGKKDAATALFNLS+N  NK+RAI AGII  LL+LLED  LGMVDEALSI  LL+SHP+G
Sbjct: 512 RGKKDAATALFNLSLNHLNKARAIDAGIITPLLQLLEDINLGMVDEALSIFLLLSSHPDG 571

Query: 560 RNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITR 619
           R+ IG+LSFIETLVE IK+GTPKNKECATSVLLELG NNS FILAALQ+GVYEHLVEI  
Sbjct: 572 RSAIGQLSFIETLVEFIKDGTPKNKECATSVLLELGSNNSSFILAALQFGVYEHLVEIAN 631

Query: 620 CGTNRGQRKANSLLQHMSKREHI 642
            GTNR QRKAN+L+Q MSK E I
Sbjct: 632 SGTNRAQRKANALMQLMSKTEQI 654

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065687|ref|XP_002301921.1| predicted protein [Populus trichocarpa] gi|222843647|gb|EEE81194.1| predicted protein [Populus trichocarpa]

 Score =  857 bits (2214), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/640 (65%), Positives = 520/640 (81%), Gaps = 4/640 (0%)

Query: 6   VVMEGATGE--NQNGVSSSLNECDRVVNELMQVIDTIGSYGGFRKTQRKECLNMVRRLKL 63
           +VM+G   +   ++  SS   E D +  E++ VI+++   G +R++ +KEC  +VRR+KL
Sbjct: 1   MVMDGERDQESTESNESSPREEID-IAQEILSVIESVARLGDYRRSHKKECYGLVRRMKL 59

Query: 64  LVPLLEEIRELDGQVSSEALNCLANLKKPLLAAKKLLKDCNYGSKIYLAAESEAVMSRFH 123
           L+P LEEI++ DG +S   +  L++LKK L+ AKKLL  CN GSKIYL  ESEAVM RFH
Sbjct: 60  LLPFLEEIKDFDGPISDVGIASLSSLKKALVLAKKLLTTCNEGSKIYLVVESEAVMMRFH 119

Query: 124 AVYDKLYEALDDVPYDELGISDEVKEQVELMRMQLQRAKGRTDTQDMELAMDMMVVFSKE 183
            V +KL++AL+ VP+DE  ISDEVKEQVELM++QL+RAK RTDTQD+ELAMDMMVV +K+
Sbjct: 120 NVLEKLWKALEAVPFDEFEISDEVKEQVELMKVQLRRAKRRTDTQDIELAMDMMVVLTKK 179

Query: 184 DDRNADSAILERLAKKLELHTIADLKAETLAVRKLVKERGGHKADSISQITDLLGKFKQI 243
           +DRNAD AI+ERLAKKLEL ++ DL+ ET+A R LVKERG    +S  Q+ DLL KFKQI
Sbjct: 180 NDRNADRAIIERLAKKLELLSVEDLEIETVATRSLVKERGNQVTESTQQMIDLLNKFKQI 239

Query: 244 AGVEDTLVLDGSVSARKLQRCQTMLVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWL 303
            G+E T VLD  V  + L++  ++++PHEFLCP+TLEIMTDPVIVA+GQTYERESIQ+W+
Sbjct: 240 VGMEVTDVLDDPVVPKMLKKSPSLIIPHEFLCPITLEIMTDPVIVASGQTYERESIQKWI 299

Query: 304 NSNHKTCPKTGQILDHLSLAPNYALRNLIVQWCEKNNVELPKKDTNTGSDA-SSAALIEE 362
           +SNH+TCPKT + L HLSLAPNYAL+NLI+QWCE NN ELPKK     SD  +S+   E+
Sbjct: 300 DSNHRTCPKTRETLAHLSLAPNYALKNLILQWCENNNFELPKKHVPASSDPETSSEHQEK 359

Query: 363 ICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEH 422
           + SL+++LSSSQL ++R +V KIRMLSKENP+NRILIANNGGI P+VQLLSYPDSKI EH
Sbjct: 360 VSSLVKDLSSSQLEVQRRAVKKIRMLSKENPENRILIANNGGIPPIVQLLSYPDSKILEH 419

Query: 423 TVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVG 482
            VTALLNLS+DE NK  I + GA+PAII +L +GT EARENSAAALFSLSMLDEN+V +G
Sbjct: 420 AVTALLNLSIDENNKSLITKGGAVPAIIGVLNSGTTEARENSAAALFSLSMLDENKVTIG 479

Query: 483 NLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGM 542
             +GIPPLV+LL+ G++RGKKDAATALFNLS+N SNK RAI AGI+  LL L++D+ LGM
Sbjct: 480 LSDGIPPLVDLLQNGTVRGKKDAATALFNLSLNHSNKGRAIDAGIVTPLLHLVKDRNLGM 539

Query: 543 VDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFI 602
           VDEALSI  LLASHPEGRNEIG+LSFIETLVE++K+GTPKNKECATSVLLELG  NS F+
Sbjct: 540 VDEALSIFLLLASHPEGRNEIGQLSFIETLVELMKDGTPKNKECATSVLLELGSTNSSFM 599

Query: 603 LAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSKREHI 642
           LAALQ+GVYE+LVEI++ GTNR QRKANSLLQ MSK EHI
Sbjct: 600 LAALQFGVYENLVEISKSGTNRAQRKANSLLQLMSKAEHI 639

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	643
TAIR|locus:2162276	660	PUB15 "Plant U-Box 15" [Arabid	0.967	0.942	0.576	7.7e-190
TAIR|locus:2075140	660	PUB13 "plant U-box 13" [Arabid	0.942	0.918	0.446	3.5e-130
UNIPROTKB|Q0IMG9	694	SPL11 "E3 ubiquitin-protein li	0.948	0.878	0.421	6.9e-118
UNIPROTKB|Q5VRH9	611	PUB12 "U-box domain-containing	0.919	0.967	0.427	1.3e-116
TAIR|locus:2082682	632	PUB14 "plant U-box 14" [Arabid	0.944	0.960	0.393	2.5e-113
TAIR|locus:2013990	628	AT1G71020 [Arabidopsis thalian	0.923	0.945	0.374	2.1e-93
TAIR|locus:2017719	612	AT1G23030 [Arabidopsis thalian	0.892	0.937	0.376	3.5e-91
TAIR|locus:2045334	829	PUB4 "plant U-box 4" [Arabidop	0.409	0.317	0.477	9.3e-84
TAIR|locus:2102455	760	AT3G54790 [Arabidopsis thalian	0.398	0.336	0.465	7.6e-77
TAIR|locus:2013688	729	PUB17 "plant U-box 17" [Arabid	0.835	0.736	0.323	1.2e-67

TAIR|locus:2162276 PUB15 "Plant U-Box 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 1840 (652.8 bits), Expect = 7.7e-190, P = 7.7e-190
 Identities = 362/628 (57%), Positives = 472/628 (75%)

Query:    15 NQNGVSSSLNECDRVVNELMQVIDTIGSYGGFRKTQRKECLNMVRRLKLLVPLLEEIREL 74
             ++  V    ++C+ +V++++ +++ +    G+R+TQ+KEC N+VRRLK+L+P L+EIR  
Sbjct:    39 HEEEVKEDDDDCEGLVSDIVSIVEFLDQINGYRRTQQKECFNLVRRLKILIPFLDEIR-- 96

Query:    75 DGQVSSEXXXXXXXXXXXXXXXXXXXXDCNYGSKIYLAAESEAVMSRFHAVYDKLYEALD 134
              G  S                       C+ GSKIY+A + E +M+RFH++Y+KL   L 
Sbjct:    97 -GFESPSCKHFLNRLRKVFLAAKKLLETCSNGSKIYMALDGETMMTRFHSIYEKLNRVLV 155

Query:   135 DVPYDELGISDEVKEQVELMRMQLQRAKGRTDTQDMELAMDMMVVFSKEDDRNADSAILE 194
               P+DEL IS + K++++ +  QL++AK RTDTQD+ELA+DMMVVFSK D RNADSAI+E
Sbjct:   156 KAPFDELMISGDAKDEIDSLCKQLKKAKRRTDTQDIELAVDMMVVFSKTDPRNADSAIIE 215

Query:   195 RLAKKLELHTIADLKAETLAVRKLVKERGGHKADSISQITDLLGKFKQIAGVEDTLVLDG 254
             RLAKKLEL TI DLK ET+A++ L++++GG   ++   I +LL KFK++ G+E T +L  
Sbjct:   216 RLAKKLELQTIDDLKTETIAIQSLIQDKGGLNIETKQHIIELLNKFKKLQGLEATDILYQ 275

Query:   255 SVSARKLQRCQTMLVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTG 314
              V  + + +  ++++PHEFLCP+TLEIM DPVI+ATGQTYE+ESIQ+W ++ HKTCPKT 
Sbjct:   276 PVINKAITKSTSLILPHEFLCPITLEIMLDPVIIATGQTYEKESIQKWFDAGHKTCPKTR 335

Query:   315 QILDHLSLAPNYALRNLIVQWCEKNNVELPKKDTNTGSDASSAALIEEICXXXXXXXXXX 374
             Q LDHLSLAPN+AL+NLI+QWCEKNN ++P+K+ +  S        +E+           
Sbjct:   336 QELDHLSLAPNFALKNLIMQWCEKNNFKIPEKEVSPDSQNEQK---DEVSLLVEALSSSQ 392

Query:   375 XXXKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDE 434
                +R SV ++R+L++ENP+NR+LIAN G I  LVQLLSYPDS IQE+ VT LLNLS+DE
Sbjct:   393 LEEQRRSVKQMRLLARENPENRVLIANAGAIPLLVQLLSYPDSGIQENAVTTLLNLSIDE 452

Query:   435 TNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLL 494
              NK+ I+ EGAIP IIEIL+NG  EARENSAAALFSLSMLDEN+V +G  NGIPPLV+LL
Sbjct:   453 VNKKLISNEGAIPNIIEILENGNREARENSAAALFSLSMLDENKVTIGLSNGIPPLVDLL 512

Query:   495 RYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLA 554
             ++G++RGKKDA TALFNLS+N +NK RAI AGI+  LL LL+DK LGM+DEALSIL LLA
Sbjct:   513 QHGTLRGKKDALTALFNLSLNSANKGRAIDAGIVQPLLNLLKDKNLGMIDEALSILLLLA 572

Query:   555 SHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHL 614
             SHPEGR  IG+LSFIETLVE I+ GTPKNKECATSVLLELG NNS FILAALQ+GVYE+L
Sbjct:   573 SHPEGRQAIGQLSFIETLVEFIRQGTPKNKECATSVLLELGSNNSSFILAALQFGVYEYL 632

Query:   615 VEITRCGTNRGQRKANSLLQHMSKREHI 642
             VEIT  GTNR QRKAN+L+Q +SK E I
Sbjct:   633 VEITTSGTNRAQRKANALIQLISKSEQI 660

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0030048 "actin filament-based movement" evidence=RCA

GO:0048610 "cellular process involved in reproduction" evidence=RCA

GO:0048868 "pollen tube development" evidence=RCA

TAIR|locus:2075140 PUB13 "plant U-box 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 1277 (454.6 bits), Expect = 3.5e-130, P = 3.5e-130
 Identities = 276/618 (44%), Positives = 382/618 (61%)

Query:    33 LMQVIDTIGSYGGFRKTQRKECLNMVRRLKLLVPLLEEIRELDGQVSSEXXXXXXXXXXX 92
             L+ V++ I +   +R T +K C N+ RRLKLLVP+ EEIRE +  +S +           
Sbjct:    12 LIDVVNEIAAISDYRITVKKLCYNLARRLKLLVPMFEEIRESNEPISEDTLKTLMNLKEA 71

Query:    93 XXXXXXXXXDCNYGSKIYLAAESEAVMSRFHAVYDKLYEALDDVPYDELGISDEVKEQVE 152
                       C+ GSKIYL  E E V S+   V  KL ++L  +PY+EL ISDEV+EQVE
Sbjct:    72 MCSAKDYLKFCSQGSKIYLVMEREQVTSKLMEVSVKLEQSLSQIPYEELDISDEVREQVE 131

Query:   153 LMRMQLQRAKGRTDTQDMELAMDMMVVFSKEDDRNADSAILERLAKKLELHTIADLKAET 212
             L+  Q +RAKGR D  D EL  D+  + +K  D +A   +LER+AKKL L  I DL  E+
Sbjct:   132 LVLSQFRRAKGRVDVSDDELYEDLQSLCNKSSDVDAYQPVLERVAKKLHLMEIPDLAQES 191

Query:   213 LAVRKLVKERGGHKADSISQITDLLGKFKQIAGVEDTLVLDGSVSARKLQRCQTM----- 267
             +A+ ++V   GG   ++I ++  +L   K     ED    +  V        QT      
Sbjct:   192 VALHEMVASSGGDVGENIEEMAMVLKMIKDFVQTEDDNGEEQKVGVNSRSNGQTSTAASQ 251

Query:   268 ---LVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAP 324
                ++P +F CP++LE+M DPVIV++GQTYER  I++W+   H TCPKT Q L   +L P
Sbjct:   252 KIPVIPDDFRCPISLEMMRDPVIVSSGQTYERTCIEKWIEGGHSTCPKTQQALTSTTLTP 311

Query:   325 NYALRNLIVQWCEKNNVELPKKDTNTG----SDASSAALIEEICXXXXXXXXXXXXXKRD 380
             NY LR+LI QWCE N++E PK  ++      S  SS A   +I              +R 
Sbjct:   312 NYVLRSLIAQWCEANDIEPPKPPSSLRPRKVSSFSSPAEANKIEDLMWRLAYGNPEDQRS 371

Query:   381 SVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHI 440
             +  +IR+L+K N DNR+ IA  G I  LV LLS PDS+IQEH+VTALLNLS+ E NK  I
Sbjct:   372 AAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRIQEHSVTALLNLSICENNKGAI 431

Query:   441 AREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIR 500
                GAIP I+++L+ G+ EAREN+AA LFSLS++DEN+V +G L  IPPLV LL  G+ R
Sbjct:   432 VSAGAIPGIVQVLKKGSMEARENAAATLFSLSVIDENKVTIGALGAIPPLVVLLNEGTQR 491

Query:   501 GKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGR 560
             GKKDAATALFNL I Q NK +AI+AG+IP+L +LL +   GMVDEAL+IL +L+SHPEG+
Sbjct:   492 GKKDAATALFNLCIYQGNKGKAIRAGVIPTLTRLLTEPGSGMVDEALAILAILSSHPEGK 551

Query:   561 NEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRC 620
               IG    + +LVE I+ G+P+N+E A +VL+ L   +   ++ A + G+   L+++   
Sbjct:   552 AIIGSSDAVPSLVEFIRTGSPRNRENAAAVLVHLCSGDPQHLVEAQKLGLMGPLIDLAGN 611

Query:   621 GTNRGQRKANSLLQHMSK 638
             GT+RG+RKA  LL+ +S+
Sbjct:   612 GTDRGKRKAAQLLERISR 629

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0016567 "protein ubiquitination" evidence=IEA;IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0070696 "transmembrane receptor protein serine/threonine kinase binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=IGI

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0006487 "protein N-linked glycosylation" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0032880 "regulation of protein localization" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q0IMG9 SPL11 "E3 ubiquitin-protein ligase SPL11" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1161 (413.8 bits), Expect = 6.9e-118, P = 6.9e-118
 Identities = 263/624 (42%), Positives = 379/624 (60%)

Query:    27 DRVVNELMQVIDTIGSYGG-FRKTQRKECLNMVRRLKLLVPLLEEIREL---DGQVSSEX 82
             +RV   +  V    G+  G +R   R++ L + RR++LL P +EE+RE    +G+   E 
Sbjct:    25 ERVAAAVEAVAAGAGAGAGEYRNAYRRQLLALSRRIRLLGPFVEELRERRRGEGEGEEEE 84

Query:    83 XXXXXXXXXXXXXXXXXXXDCNYGSKIYLAAESEAVMSRFHAVYDKLYEALDDVPYDELG 142
                                    GS+I L  E ++VM +F  V  +L +AL D+PY+EL 
Sbjct:    85 RALAPLADALEAALALLRLG-REGSRISLVLERDSVMKKFQGVILQLEQALCDIPYNELD 143

Query:   143 ISDEVKEQVELMRMQLQRAKGRTDTQDMELAMDMMVVFSKEDDRNADSAILERLAKKLEL 202
             ISDEV+EQVEL+  QL+RAK R D  D E   D++ V+ K  D +A+ AIL RL++KL L
Sbjct:   144 ISDEVREQVELVHAQLKRAKERIDMPDDEFYNDLLSVYDKNYDPSAELAILGRLSEKLHL 203

Query:   203 HTIADLKAETLAVRKLVKERGGHK-ADSISQITDLLGKFKQIAGVEDTLVLDGSVSARKL 261
              TI DL  E+LA+ ++V   GG    + I +++ LL K K     ++   +   +++R L
Sbjct:   204 MTITDLTQESLALHEMVASGGGQDPGEHIERMSMLLKKIKDFVQTQNP-DMGPPMASRVL 262

Query:   262 QR---CQTMLVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILD 318
                   + + +P EF CP++LE+M DPVIV+TGQTYER  I++W+ S H TCP T Q + 
Sbjct:   263 DSNGDSRPITIPDEFRCPISLELMKDPVIVSTGQTYERACIEKWIASGHHTCPTTQQKMS 322

Query:   319 HLSLAPNYALRNLIVQWCEKNNVELPKKDT--NTGSDASSAALIEEICXXXXXXXXXXXX 376
               +L PNY LR+LI QWCE N +E PK+ T  N  + A S++    I             
Sbjct:   323 TSALTPNYVLRSLISQWCETNGMEPPKRSTQPNKPTPACSSSERANIDALLSKLCSPDTE 382

Query:   377 XKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETN 436
              +R +  ++R+L+K N +NRI IA  G I  L+ LLS  D + QEH VTALLNLS+ E N
Sbjct:   383 EQRSAAAELRLLAKRNANNRICIAEAGAIPLLLSLLSSSDLRTQEHAVTALLNLSIHEDN 442

Query:   437 KRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRY 496
             K  I   GA+P+I+ +L+NG+ EAREN+AA LFSLS++DE +V +G +  IP LV LL  
Sbjct:   443 KASIISSGAVPSIVHVLKNGSMEARENAAATLFSLSVIDEYKVTIGGMGAIPALVVLLGE 502

Query:   497 GSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH 556
             GS RGKKDAA ALFNL I Q NK RAI+AG++P ++ L+ +    ++DEA++IL +L+SH
Sbjct:   503 GSQRGKKDAAAALFNLCIYQGNKGRAIRAGLVPLIMGLVTNPTGALMDEAMAILSILSSH 562

Query:   557 PEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLEL--GLNNSYFILAALQYGVYEHL 614
             PEG+  IG    +  LVE+I +GTP+N+E A +V+L L  G ++   +  A + G+   L
Sbjct:   563 PEGKAAIGAAEPVPVLVEMIGSGTPRNRENAAAVMLHLCSGEHHLVHLARAQECGIMVPL 622

Query:   615 VEITRCGTNRGQRKANSLLQHMSK 638
              E+   GT+RG+RKA  LL+ MS+
Sbjct:   623 RELALNGTDRGKRKAVQLLERMSR 646

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0031348 "negative regulation of defense response" evidence=IMP

GO:0043069 "negative regulation of programmed cell death" evidence=IMP

GO:0048586 "regulation of long-day photoperiodism, flowering" evidence=IMP

UNIPROTKB|Q5VRH9 PUB12 "U-box domain-containing protein 12" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1149 (409.5 bits), Expect = 1.3e-116, P = 1.3e-116
 Identities = 259/606 (42%), Positives = 364/606 (60%)

Query:    35 QVIDTIGSYGGFRKTQRKECLNMVRRLKLLVPLLEEIRELDGQVSSEXXXXXXXXXXXXX 94
             +V D I +    R   R+ C ++ RR++LL PLL+    L    SS              
Sbjct:     4 RVADEIAALPEPRGPLRRPCADLSRRVRLLAPLLDH---LPASSSSSSSTPLADALGAAR 60

Query:    95 XXXXXXXDCNYGSKIYLAAESEAVMSRFHAVYDKLYEALDDVPYDELGISDEVKEQVELM 154
                    D   GSKI  A   +A +  F  V  +++ ALD +PY+   +  EV+EQV L+
Sbjct:    61 DLLRKTRD---GSKIDQAMRGDAFLDEFAGVNRQIHLALDALPYNTFHMPQEVQEQVALV 117

Query:   155 RMQLQRAKGRTDTQDMELAMDMMVVFSKEDDRNADSAILERLAKKLELHTIADLKAETLA 214
               Q QRA  RTD  D +L+MD+    +   D  +D A+L R++ KL+LHT+AD+K E++A
Sbjct:   118 HSQFQRASTRTDPPDTQLSMDLAWALT---DNPSDPALLTRISHKLQLHTMADMKNESIA 174

Query:   215 VRKLVKERGGHKADSISQITDLLGKFKQIAGVEDTLVLDGSVSARKLQ-RCQTMLVPHEF 273
             +  +V    G     + Q++ LL K K     ED    + +++ R    + ++ ++P EF
Sbjct:   175 LHNMVISTAGEPDGCVDQMSSLLKKLKDCVVTEDHA--NDALTTRSASIKHRSPIIPDEF 232

Query:   274 LCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLIV 333
              CP++LE+M DPVIV++GQTYER  IQ+WL+S HKTCPKT Q L H SL PN+ L++LI 
Sbjct:   233 RCPISLELMQDPVIVSSGQTYERSCIQKWLDSGHKTCPKTQQPLSHTSLTPNFVLKSLIS 292

Query:   334 QWCEKNNVELPKKDTNT-GSDASSAALIEE--ICXXXXXXXXXXXXXKRDSVMKIRMLSK 390
             QWCE N +ELPK   N+    A+ ++  +   +              +R +  +IR+L+K
Sbjct:   293 QWCEANGIELPKNKQNSRDKKAAKSSDYDHAGLVSLMNRLRSGNQDEQRAAAGEIRLLAK 352

Query:   391 ENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAII 450
              N +NRI IA  G I  LV LLS  D + QEH VTALLNLS+ E NK  I    AIP I+
Sbjct:   353 RNVNNRICIAEAGAIPLLVNLLSSSDPRTQEHAVTALLNLSIHENNKASIVDSHAIPKIV 412

Query:   451 EILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALF 510
             E+L+ G+ E REN+AA LFSLS++DEN+V +G    IPPL+NLL  GS RGKKDAATA+F
Sbjct:   413 EVLKTGSMETRENAAATLFSLSVVDENKVTIGAAGAIPPLINLLCDGSPRGKKDAATAIF 472

Query:   511 NLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIE 570
             NL I Q NK RA+KAGI+  L+  L D   GM+DEALS+L +LA +PEG+  I R   I 
Sbjct:   473 NLCIYQGNKVRAVKAGIVIHLMNFLVDPTGGMIDEALSLLSILAGNPEGKIVIARSEPIP 532

Query:   571 TLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKAN 630
              LVE+IK G+P+N+E A ++L  L   ++   LAA   GV + L E++  GT+R +RKA+
Sbjct:   533 PLVEVIKTGSPRNRENAAAILWLLCSADTEQTLAAKAAGVEDALKELSETGTDRAKRKAS 592

Query:   631 SLLQHM 636
             S+L+ M
Sbjct:   593 SILELM 598

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

TAIR|locus:2082682 PUB14 "plant U-box 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 1118 (398.6 bits), Expect = 2.5e-113, P = 2.5e-113
 Identities = 244/620 (39%), Positives = 377/620 (60%)

Query:    32 ELM-QVIDTIGSYGGFRKTQR---KECLNMVRRLKLLVPLLEEIRELDGQVSSEXXXXXX 87
             ELM +++D++    GF  ++    K   ++VRR+ LL P  EE+ +++ ++  +      
Sbjct:    11 ELMSRLVDSVKEISGFSSSRGFIGKIQGDLVRRITLLSPFFEELIDVNVELKKDQITGFE 70

Query:    88 XXXXXXXXXXXXXXDCNYGSKIYLAAESEAVMSRFHAVYDKLYEALDDVPYDELGISDEV 147
                             N GSK++   + ++++ +F  +  ++  AL  +PY+++ +S+EV
Sbjct:    71 AMRIALDSSLELFRSVNGGSKLFQLFDRDSLVEKFRDMTVEIEAALSQIPYEKIEVSEEV 130

Query:   148 KEQVELMRMQLQRAKGRTDTQDMELAMDMMVVFSKEDDRNADSAILERLAKKLELHTIAD 207
             +EQV+L+  Q +RAK R +  D++L+ D+ +    E+  + D  IL+RL+++L+L TI +
Sbjct:   131 REQVQLLHFQFKRAKERWEESDLQLSHDLAMA---ENVMDPDPIILKRLSQELQLTTIDE 187

Query:   208 LKAETLAVRKLVKERGGHKADSISQITDLLGKFKQIAGVEDTLVLDGSVSARKLQRCQTM 267
             LK E+ A+ +      G   D   +++ LL        +E +   D S  +R + R ++ 
Sbjct:   188 LKKESHAIHEYFLSYDGDPDDCFERMSSLLKNLVDFVTMESSDP-DPSTGSRIVSRHRSP 246

Query:   268 LVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYA 327
             ++P  F CP++LE+M DPVIV+TGQTYER SIQ+WL++ HKTCPK+ + L H  L PNY 
Sbjct:   247 VIPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYV 306

Query:   328 LRNLIVQWCEKNNVELPK-----KDTNTGSDASSAALIEEICXXXXXXXXXXXXXKRDSV 382
             L++LI  WCE N +ELP+     + T  G  +SS      +              +R + 
Sbjct:   307 LKSLIALWCESNGIELPQNQGSCRTTKIGGSSSSDCDRTFVLSLLEKLANGTTEQQRAAA 366

Query:   383 MKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAR 442
              ++R+L+K N DNR+ IA  G I  LV+LLS PD + QEH+VTALLNLS++E NK  I  
Sbjct:   367 GELRLLAKRNVDNRVCIAEAGAIPLLVELLSSPDPRTQEHSVTALLNLSINEGNKGAIVD 426

Query:   443 EGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGK 502
              GAI  I+E+L+NG+ EAREN+AA LFSLS++DEN+V +G    I  L++LL  G+ RGK
Sbjct:   427 AGAITDIVEVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIQALISLLEEGTRRGK 486

Query:   503 KDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNE 562
             KDAATA+FNL I Q NKSRA+K GI+  L +LL+D   GMVDEAL+IL +L+++ EG+  
Sbjct:   487 KDAATAIFNLCIYQGNKSRAVKGGIVDPLTRLLKDAGGGMVDEALAILAILSTNQEGKTA 546

Query:   563 IGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGT 622
             I     I  LVEII+ G+P+N+E A ++L  L + N   +  A + G    L E+T  GT
Sbjct:   547 IAEAESIPVLVEIIRTGSPRNRENAAAILWYLCIGNIERLNVAREVGADVALKELTENGT 606

Query:   623 NRGQRKANSLLQHMSKREHI 642
             +R +RKA SLL+ + + E +
Sbjct:   607 DRAKRKAASLLELIQQTEGV 626

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA

GO:0005871 "kinesin complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA;ISS

GO:0019894 "kinesin binding" evidence=IEA

GO:0070696 "transmembrane receptor protein serine/threonine kinase binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0046777 "protein autophosphorylation" evidence=RCA

TAIR|locus:2013990 AT1G71020 [Arabidopsis thaliana (taxid:3702)]

 Score = 930 (332.4 bits), Expect = 2.1e-93, P = 2.1e-93
 Identities = 236/630 (37%), Positives = 359/630 (56%)

Query:    27 DRVVNELMQVIDTIGSYGGFRKTQRKECLNMVRRLKLLVPLLEEIREL----DGQVSSEX 82
             D ++  + ++ +  G++G F+K    +C ++ RR+ LL  L+EEIR+     +   SS  
Sbjct:     9 DSLIGLIAEINEIPGNFGLFKK----DCSDLARRVGLLTHLIEEIRDSSPPSESDASSSL 64

Query:    83 XXXXXXXXXXXXXXXXXXXDCNYGSKIYLAAES-----EAVMSRFHAVYDKLYEALDDVP 137
                                     +  + A ES     + +  +F  V  KL +AL D+ 
Sbjct:    65 NSHECDWWSDLVVGLQAAKRLLSSATSFQARESSDGAAKRISFQFQCVTWKLEKALGDLT 124

Query:   138 YDELGISDEVKEQVELMRMQLQRAKGRTDTQDMELAMDMMVVFSKEDDRNADSAILERLA 197
             YD   ISDEV+EQVEL R+QL+RA  R  + + +      +    E D +++  ++E+L 
Sbjct:   125 YDRYDISDEVREQVELARLQLRRAMQRYGSLNSK-KFSSGLSEPMEKDASSNRKVIEKLE 183

Query:   198 KKLE-LHTIADLKAETLAVRKLVKERGGHKADSISQITDLLGKFKQIAGVEDTLVLDGSV 256
                E +H+++D         K  +     K+ S+S     L  F    G ++ L    + 
Sbjct:   184 SIPETVHSLSD--------EKKFESPPPWKSSSVS-----LAFFLSKDGDDERLEKAVTE 230

Query:   257 SARKLQRCQTMLVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQI 316
             ++   Q+   + +P +FLCP++LE+M DP IV+TGQTYER  IQRW++  + +CPKT Q 
Sbjct:   231 NSDDSQKSDNLTIPEDFLCPISLELMKDPAIVSTGQTYERSFIQRWIDCGNLSCPKTQQK 290

Query:   317 LDHLSLAPNYALRNLIVQWCEKNNVELPKKDTN---TGSDASSAAL---IEEICXXXXXX 370
             L++ +L PNY LR+LI QWC K+N+E P    N     SD S   L   +  I       
Sbjct:   291 LENFTLTPNYVLRSLISQWCTKHNIEQPGGYMNGRTKNSDGSFRDLSGDMSAIRALVCKL 350

Query:   371 XXXXXXXKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLL-SYPDSKIQEHTVTALLN 429
                    +R +V +IR LSK + DNRILIA  G I  LV+LL S  D++ QE+ VT +LN
Sbjct:   351 SSQSIEDRRTAVSEIRSLSKRSTDNRILIAEAGAIPVLVKLLTSDGDTETQENAVTCILN 410

Query:   430 LSLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPP 489
             LS+ E NK  I   GA+ +I+ +L+ G+ EAREN+AA LFSLS+ DEN++++G    I  
Sbjct:   411 LSIYEHNKELIMLAGAVTSIVLVLRAGSMEARENAAATLFSLSLADENKIIIGASGAIMA 470

Query:   490 LVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALG-MVDEALS 548
             LV+LL+YGS+RGKKDAATALFNL I Q NK RA++AGI+  L+K+L D +   M DEAL+
Sbjct:   471 LVDLLQYGSVRGKKDAATALFNLCIYQGNKGRAVRAGIVKPLVKMLTDSSSERMADEALT 530

Query:   549 ILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQY 608
             IL +LAS+   +  I R + I  L++ ++   P+N+E A ++LL L   ++  +++  + 
Sbjct:   531 ILSVLASNQVAKTAILRANAIPPLIDCLQKDQPRNRENAAAILLCLCKRDTEKLISIGRL 590

Query:   609 GVYEHLVEITRCGTNRGQRKANSLLQHMSK 638
             G    L+E++R GT R +RKANSLL+ + K
Sbjct:   591 GAVVPLMELSRDGTERAKRKANSLLELLRK 620

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005871 "kinesin complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

TAIR|locus:2017719 AT1G23030 [Arabidopsis thaliana (taxid:3702)]

 Score = 909 (325.0 bits), Expect = 3.5e-91, P = 3.5e-91
 Identities = 224/595 (37%), Positives = 347/595 (58%)

Query:    51 RKECLNMVRRLKLLVPLLEEIRE---LDGQVSSEXXXXX-XXXXXXXXXXXXXXXDCNYG 106
             +K+C ++ RR+ LL  LLEEIR+   +D   SS                         + 
Sbjct:    29 KKDCADLTRRVCLLTHLLEEIRDSTPIDSAASSSSENDWWSDLVVGLQAAKRLLSTARFQ 88

Query:   107 SKIYLAAESEAVMSRFHAVYDKLYEALDDVPYDELGISDEVKEQVELMRMQLQRAKGRTD 166
             ++      ++ +  +F  V  KL +AL ++PYD   ISDEV EQVEL R QL+RA  R  
Sbjct:    89 ARDSSDGAAKRISFQFQCVTWKLEKALSNLPYDLYDISDEVGEQVELARSQLRRAMQRYG 148

Query:   167 TQDMELAMDMMVVFSKEDDRNADSAILERLAKKLELHTIADLKAETLAVRKLVKERGGHK 226
             + +       +   S+  +R+  S +++  A++ +L +++    ETL   +  +++    
Sbjct:   149 SLNSNKFSSAL---SEPMERDGFSNVIKIKAEE-KLESVS----ETLHFGEEEEKQSSPP 200

Query:   227 ADSISQITDLLGKFKQIAGVEDTLVLDGSVSAR--KLQRCQTMLVPHEFLCPVTLEIMTD 284
                 S I+  L  +  ++   DT  LD  V+    + ++   + +P +FLCPV+LE+M D
Sbjct:   201 LRRSSSIS--LAYY--LSKDADTDRLDKMVNKNTDESKKSDKLTIPVDFLCPVSLELMKD 256

Query:   285 PVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLIVQWCEKNNVELP 344
             PVIVATGQTYER  IQRW++  + TCPKT Q L++ +L PNY LR+LI +WC ++N+E P
Sbjct:   257 PVIVATGQTYERAYIQRWIDCGNLTCPKTQQKLENFTLTPNYVLRSLISRWCAEHNIEQP 316

Query:   345 KKDTNTGSDASSAALIEEICXXXXXXXXXXXXXKRDSVMKIRMLSKENPDNRILIANNGG 404
                 N G   +S  +   I              +R++V +IR LSK + DNRILIA  G 
Sbjct:   317 AGYIN-GRTKNSGDM-SVIRALVQRLSSRSTEDRRNAVSEIRSLSKRSTDNRILIAEAGA 374

Query:   405 IRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTNEARENS 464
             I  LV LL+  D   QE+ +T +LNLS+ E NK  I   GA+ +I+++L+ GT EAREN+
Sbjct:   375 IPVLVNLLTSEDVATQENAITCVLNLSIYENNKELIMFAGAVTSIVQVLRAGTMEARENA 434

Query:   465 AAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIK 524
             AA LFSLS+ DEN++++G    IP LV+LL  G+ RGKKDAATALFNL I   NK RA++
Sbjct:   435 AATLFSLSLADENKIIIGGSGAIPALVDLLENGTPRGKKDAATALFNLCIYHGNKGRAVR 494

Query:   525 AGIIPSLLKLLEDKALG-MVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKN 583
             AGI+ +L+K+L D     MVDEAL+IL +LA++ + ++ I + + +  L+ I++    +N
Sbjct:   495 AGIVTALVKMLSDSTRHRMVDEALTILSVLANNQDAKSAIVKANTLPALIGILQTDQTRN 554

Query:   584 KECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK 638
             +E A ++LL L   ++  ++   + G    L+++++ GT RG+RKA SLL+ + K
Sbjct:   555 RENAAAILLSLCKRDTEKLITIGRLGAVVPLMDLSKNGTERGKRKAISLLELLRK 609

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP

TAIR|locus:2045334 PUB4 "plant U-box 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 602 (217.0 bits), Expect = 9.3e-84, Sum P(2) = 9.3e-84
 Identities = 126/264 (47%), Positives = 183/264 (69%)

Query:   378 KRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNK 437
             +R +  ++R+L+K N DNRI+I N+G I  LV+LL   DS  QE+ VTALLNLS+++ NK
Sbjct:   561 QRQATAELRLLAKHNMDNRIVIGNSGAIVLLVELLYSTDSATQENAVTALLNLSINDNNK 620

Query:   438 RHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYG 497
             + IA  GAI  +I +L+NG++EA+ENSAA LFSLS+++EN++ +G    I PLV+LL  G
Sbjct:   621 KAIADAGAIEPLIHVLENGSSEAKENSAATLFSLSVIEENKIKIGQSGAIGPLVDLLGNG 680

Query:   498 SIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHP 557
             + RGKKDAATALFNLSI+Q NK+  +++G +  L+ L+ D A GMVD+A+++L  LA+ P
Sbjct:   681 TPRGKKDAATALFNLSIHQENKAMIVQSGAVRYLIDLM-DPAAGMVDKAVAVLANLATIP 739

Query:   558 EGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEI 617
             EGRN IG+   I  LVE+++ G+ + KE A + LL+L  N+  F    LQ G    LV +
Sbjct:   740 EGRNAIGQEGGIPLLVEVVELGSARGKENAAAALLQLSTNSGRFCNMVLQEGAVPPLVAL 799

Query:   618 TRCGTNRGQRKANSLLQHMSKREH 641
             ++ GT R + KA +LL +   + H
Sbjct:   800 SQSGTPRAREKAQALLSYFRNQRH 823

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005871 "kinesin complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

TAIR|locus:2102455 AT3G54790 [Arabidopsis thaliana (taxid:3702)]

 Score = 506 (183.2 bits), Expect = 7.6e-77, Sum P(3) = 7.6e-77
 Identities = 121/260 (46%), Positives = 162/260 (62%)

Query:   378 KRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKI-QEHTVTALLNLSLDETN 436
             K  +  +IR L+  + +NR+ I   G I PL+ LL Y + K+ QEH VTALLNLS+ E N
Sbjct:   489 KTAAAAEIRHLTINSIENRVHIGRCGAITPLLSLL-YSEEKLTQEHAVTALLNLSISELN 547

Query:   437 KRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNG-IPPLVNLLR 495
             K  I   GAI  ++ +L  G + A+ENSAA+LFSLS+L  NR  +G  N  I  LVNLL 
Sbjct:   548 KAMIVEVGAIEPLVHVLNTGNDRAKENSAASLFSLSVLQVNRERIGQSNAAIQALVNLLG 607

Query:   496 YGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLAS 555
              G+ RGKKDAA+ALFNLSI   NK+R ++A  +  L++LL D  L MVD+A+++L  L++
Sbjct:   608 KGTFRGKKDAASALFNLSITHDNKARIVQAKAVKYLVELL-DPDLEMVDKAVALLANLSA 666

Query:   556 HPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLV 615
               EGR  I R   I  LVE +  G+ + KE A SVLL+L LN+  F    LQ G    LV
Sbjct:   667 VGEGRQAIVREGGIPLLVETVDLGSQRGKENAASVLLQLCLNSPKFCTLVLQEGAIPPLV 726

Query:   616 EITRCGTNRGQRKANSLLQH 635
              +++ GT R + KA  LL H
Sbjct:   727 ALSQSGTQRAKEKAQQLLSH 746

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005871 "kinesin complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

TAIR|locus:2013688 PUB17 "plant U-box 17" [Arabidopsis thaliana (taxid:3702)]

 Score = 687 (246.9 bits), Expect = 1.2e-67, P = 1.2e-67
 Identities = 184/569 (32%), Positives = 307/569 (53%)

Query:   103 CNYGSKIYLAAESEAVMSRFHAVYDKLYEALDDVPYDELGISDEVKEQVELMRMQLQRAK 162
             C   SK++L  ++ ++   FH +  ++   LD +P ++LG+SD+++EQ+EL++ Q ++A+
Sbjct:   124 CAQSSKLWLLLQNPSISGYFHDLNQEISTLLDVLPVNDLGLSDDIREQIELLQRQSRKAR 183

Query:   163 GRTDTQDMELAMDMMVVFSKEDDRNADSAILERL--AKKLELHTIADLKAETLAVRKLVK 220
                D  D  L           ++    S++  R+   +KL +      ++E   + + + 
Sbjct:   184 LYIDKNDESLRESFYSFLDGFENGKIPSSVDLRMFFVEKLGIRDSKSCRSEIEFLEEQIV 243

Query:   221 ERGGHKADSISQITDLLG-----KFKQIAGVEDTL---VLDGSVSARK---LQRC-QTML 268
                G    + S I   +      +F      ED +   + +     RK    Q    T +
Sbjct:   244 NHDGDLEPTGSVINGFVAITRYCRFLLFGFEEDGMEWWIENNPKKPRKGFVAQEIGDTFI 303

Query:   269 -VPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYA 327
              VP +F+CP++L++MTDPVI++TGQTY+R SI RW+   H TCPKTGQ+L    + PN A
Sbjct:   304 TVPKDFVCPISLDLMTDPVIISTGQTYDRNSIARWIEEGHCTCPKTGQMLMDSRIVPNRA 363

Query:   328 LRNLIVQWCEKNNVELPKKDTNTGSDASSAAL-----IEE----ICXXXXXXXXXXXXXK 378
             L+NLIVQWC  + +    + T++ +++ ++AL     +E     +              +
Sbjct:   364 LKNLIVQWCTASGISYESEFTDSPNESFASALPTKAAVEANKATVSILIKYLADGSQAAQ 423

Query:   379 RDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKR 438
               +  +IR+L+K   +NR  IA  G I  L +LL+  ++  QE++VTA+LNLS+ E NK 
Sbjct:   424 TVAAREIRLLAKTGKENRAYIAEAGAIPHLCRLLTSENAIAQENSVTAMLNLSIYEKNKS 483

Query:   439 HIAREG-AIPAIIEILQNG-TNEARENSAAALFSLSMLDENRVMVGNLNG-IPPLVNLLR 495
              I  EG  + +I+ +L +G T EA+EN+AA LFSLS + E +  +  ++  +  L  LL+
Sbjct:   484 RIMEEGDCLESIVSVLVSGLTVEAQENAAATLFSLSAVHEYKKRIAIVDQCVEALALLLQ 543

Query:   496 YGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLAS 555
              G+ RGKKDA TAL+NLS +  N SR I+ G + SL+  L+++  G+ +EA   L LL  
Sbjct:   544 NGTPRGKKDAVTALYNLSTHPDNCSRMIEGGGVSSLVGALKNE--GVAEEAAGALALLVR 601

Query:   556 HPEGRNEIGRL-SFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILA-ALQYGVYEH 613
                G   IG+  S +  L+ +++ GTP+ KE A + LLEL  +    +    L+      
Sbjct:   602 QSLGAEAIGKEDSAVAGLMGMMRCGTPRGKENAVAALLELCRSGGAAVAEKVLRAPAIAG 661

Query:   614 LVE-ITRCGTNRGQRKANSLLQHMSKREH 641
             L++ +   GT R +RKA SL +   +RE+
Sbjct:   662 LLQTLLFTGTKRARRKAASLARVFQRREN 690

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA

GO:0016567 "protein ubiquitination" evidence=IEA;IDA

GO:0009626 "plant-type hypersensitive response" evidence=IGI

GO:0009814 "defense response, incompatible interaction" evidence=IMP

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q681N2	PUB15_ARATH	6, ., 3, ., 2, ., -	0.6123	0.9455	0.9212	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	643
smart00504	63	smart00504, Ubox, Modified RING finger domain	9e-27
pfam04564	73	pfam04564, U-box, U-box domain	5e-21
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	5e-16
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	4e-14
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	2e-13
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	2e-10
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	3e-10
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	1e-09
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	7e-08
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	2e-07
pfam13445	55	pfam13445, zf-RING_LisH, RING-type zinc-finger, Li	2e-07
pfam05804	708	pfam05804, KAP, Kinesin-associated protein (KAP)	2e-07
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	6e-07
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	7e-07
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	1e-06
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	2e-06
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	1e-05
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	6e-05
pfam11789	57	pfam11789, zf-Nse, Zinc-finger of the MIZ type in	1e-04
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	3e-04
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	0.003

>gnl|CDD|128780 smart00504, Ubox, Modified RING finger domain

 Score =  102 bits (257), Expect = 9e-27
 Identities = 37/64 (57%), Positives = 48/64 (75%), Gaps = 1/64 (1%)

Query: 272 EFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNL 331
           EFLCP++LE+M DPVI+ +GQTYER +I++WL S H T P TGQ L H  L PN AL++ 
Sbjct: 1   EFLCPISLEVMKDPVILPSGQTYERSAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSA 59

Query: 332 IVQW 335
           I +W
Sbjct: 60  IQEW 63

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination. Length = 63

>gnl|CDD|203049 pfam04564, U-box, U-box domain

 Score = 87.0 bits (216), Expect = 5e-21
 Identities = 34/71 (47%), Positives = 45/71 (63%)

Query: 269 VPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYAL 328
           +P EFL P+TLE+M DPVI+ +G TY+R +I+R L S   T P T + L H  L PN  L
Sbjct: 1   IPDEFLDPITLELMKDPVILPSGITYDRSTIERHLLSVDPTDPFTREPLTHDQLIPNLEL 60

Query: 329 RNLIVQWCEKN 339
           +  I  W E+N
Sbjct: 61  KEKIDAWLEEN 71

This domain is related to the Ring finger pfam00097 but lacks the zinc binding residues. Length = 73

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 74.3 bits (183), Expect = 5e-16
 Identities = 33/111 (29%), Positives = 61/111 (54%), Gaps = 1/111 (0%)

Query: 363 ICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEH 422
           + +L+  LSSS  N++R++   +  LS  N DN   +   GG+  LVQLL   D ++ + 
Sbjct: 9   LPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKA 68

Query: 423 TVTALLNLSLDETNKRHIARE-GAIPAIIEILQNGTNEARENSAAALFSLS 472
            + AL NL+    + + I  E G +P ++ +L +   + ++N+  AL +L+
Sbjct: 69  ALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 68.9 bits (169), Expect = 4e-14
 Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 2/118 (1%)

Query: 440 IAREGAIPAIIEILQNGTNEARENSAAALFSLS-MLDENRVMVGNLNGIPPLVNLLRYGS 498
           + + G +PA++ +L +     +  +A AL +LS   ++N   V    G+P LV LL+   
Sbjct: 3   VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSED 62

Query: 499 IRGKKDAATALFNLSINQSNKSRAI-KAGIIPSLLKLLEDKALGMVDEALSILQLLAS 555
               K A  AL NL+    +    + +AG +P L+ LL+     +   A   L  LAS
Sbjct: 63  EEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 67.0 bits (164), Expect = 2e-13
 Identities = 38/118 (32%), Positives = 64/118 (54%), Gaps = 2/118 (1%)

Query: 398 LIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDET-NKRHIAREGAIPAIIEILQNG 456
            +   GG+  LV LLS  D  +Q     AL NLS     N + +   G +PA++++L++ 
Sbjct: 2   AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61

Query: 457 TNEARENSAAALFSLS-MLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLS 513
             E  + +  AL +L+   ++N+++V    G+P LVNLL   +   +K+A  AL NL+
Sbjct: 62  DEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 64.0 bits (156), Expect = 2e-10
 Identities = 47/149 (31%), Positives = 76/149 (51%), Gaps = 7/149 (4%)

Query: 392 NPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNK-RHI-AREGAIPAI 449
           N      + +    + LV L++   + +QE  + AL +L   +      +  REG +  +
Sbjct: 393 NAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREG-VQLL 451

Query: 450 IEILQNGTNEARENSAAALFSLS-MLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATA 508
           I +L   + + +E + A L  L+  +DE++  +    GIPPLV LL  GS + K+D+AT 
Sbjct: 452 ISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATV 511

Query: 509 LFNLSINQSNKSRAI--KAGIIPSLLKLL 535
           L+NL    S   RA    AG +P+LL LL
Sbjct: 512 LWNLC-CHSEDIRACVESAGAVPALLWLL 539

Length = 2102

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 57.7 bits (140), Expect = 3e-10
 Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 2/117 (1%)

Query: 480 MVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQS-NKSRAIKAGIIPSLLKLLEDK 538
            V    G+P LV+LL       +++AA AL NLS   + N    ++AG +P+L++LL+ +
Sbjct: 2   AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61

Query: 539 ALGMVDEALSILQLLASHPEGRNEIGRLS-FIETLVEIIKNGTPKNKECATSVLLEL 594
              +V  AL  L+ LA+ PE    I   +  +  LV ++ +     ++ AT  L  L
Sbjct: 62  DEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 61.3 bits (149), Expect = 1e-09
 Identities = 56/200 (28%), Positives = 100/200 (50%), Gaps = 19/200 (9%)

Query: 404 GIRPLVQLLSYPDSKIQEHTVTALLNLSLDETN--KRHIAREGAIPAIIEILQNGTNEAR 461
           G++ L+ LL     + QE+ V ALL +  DE +  K  I   G IP ++++L+ G+ +A+
Sbjct: 447 GVQLLISLLGLSSEQQQEYAV-ALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAK 505

Query: 462 ENSAAALFSL-SMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKS 520
           E+SA  L++L    ++ R  V +   +P L+ LL+ G  +G++ AA  L  L +  ++  
Sbjct: 506 EDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKL-VRTAD-- 562

Query: 521 RAIKAGIIPSLLKLL-----EDKALGMVDEALSILQLLASHPE-GRNEIGRLSFIETLVE 574
               A  I  L  LL     E K    V + L  +  +AS  +  R        + TL++
Sbjct: 563 ----AATISQLTALLLGDLPESKV--HVLDVLGHVLSVASLEDLVREGSAANDALRTLIQ 616

Query: 575 IIKNGTPKNKECATSVLLEL 594
           ++ +   + +E A SVL ++
Sbjct: 617 LLSSSKEETQEKAASVLADI 636

Length = 2102

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 55.5 bits (134), Expect = 7e-08
 Identities = 35/99 (35%), Positives = 56/99 (56%), Gaps = 6/99 (6%)

Query: 445 AIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNG-IPPLVNLLRYGSIRGKK 503
           A+P ++ +L++GT  A+ N+AA L  L   ++ RV V  L G IPPL++LL+ GS   +K
Sbjct: 59  AMPLLVSLLRSGTLGAKVNAAAVLGVLCKEEDLRVKV-LLGGCIPPLLSLLKSGSAEAQK 117

Query: 504 DAATALFNLSINQSNKSRAIK----AGIIPSLLKLLEDK 538
            AA A++ +S    +     K     G++PSL   L+  
Sbjct: 118 AAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPG 156

Length = 2102

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 54.3 bits (131), Expect = 2e-07
 Identities = 58/241 (24%), Positives = 108/241 (44%), Gaps = 7/241 (2%)

Query: 388  LSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETN-KRHIAREGAI 446
            L++ +  N++ +A  G +  L + LS       E   + LL +       +RH +  GA+
Sbjct: 1175 LAEGSDVNKLAMAEAGALDALTKYLSLGPQDSTEEAASELLRILFSSPELRRHESAFGAV 1234

Query: 447  PAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAA 506
              ++ +L+ G+  AR ++A AL  L   +  R        + PLV +L  GS   +  A 
Sbjct: 1235 NQLVAVLRLGSRSARYSAARALQELFSAEHIRDSELARQAVQPLVEMLNTGSESEQHAAI 1294

Query: 507  TALFNLSINQSNKSRAI---KAGIIPSLLKLLE-DKALGMVDEALSILQLLASHPEGRNE 562
             AL  LS    +K+ AI   +   + +L K+L  D +L + ++A  + ++L ++   R+ 
Sbjct: 1295 GALIKLSSGNPSKALAIADVEGNALENLCKILSSDSSLELKEDAAELCRVLFTNTRIRST 1354

Query: 563  IGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGT 622
                  IE L+ ++ + +   +E     L  L L++         +G    LV +   GT
Sbjct: 1355 PAAARCIEPLISLLVSESSTAQEAGVCALDRL-LDDEQLAELVAAHGAVVPLVGLV-VGT 1412

Query: 623  N 623
            N
Sbjct: 1413 N 1413

Length = 2102

>gnl|CDD|222135 pfam13445, zf-RING_LisH, RING-type zinc-finger, LisH dimerisation motif

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 5/44 (11%)

Query: 273 FLCPVTLEIMTD----PVIVATGQTYERESIQRWL-NSNHKTCP 311
           F+CP++ E+MTD    PV++  G  Y R+++++   N     CP
Sbjct: 11  FVCPISKEVMTDEENPPVMLPCGHVYSRKALEKLAKNGGKFKCP 54

This zinc-finger is the dimerisation motif for LisH proteins, and is also a typical RING-type of plant ubiquitin ligases. Length = 55

>gnl|CDD|147776 pfam05804, KAP, Kinesin-associated protein (KAP)

 Score = 53.7 bits (129), Expect = 2e-07
 Identities = 46/187 (24%), Positives = 84/187 (44%), Gaps = 9/187 (4%)

Query: 394 DNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEIL 453
           +N+  +  NG I  L++L       +   T+  L NLS D   +  +   G +P ++ +L
Sbjct: 318 ENKNEMEENGIIEKLLKLFPCQHEDLLNITLRLLFNLSFDTGLRPKMVNGGLLPKLVSLL 377

Query: 454 QNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGS-IRGKKDAATALFNL 512
            N  +     +   L+ LS  D+ + M    + IP L+ ++  G+  R   +      NL
Sbjct: 378 DNDNH--HGIALCVLYHLSCDDKAKSMFAYTDCIPMLMKMVLEGTGERVDLELIALCINL 435

Query: 513 SINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEAL-SILQLLASHPEGRNEIGRLSFIET 571
           ++N+ N     +       L LL ++AL   D  L  +++ ++ H EG  +   + +I  
Sbjct: 436 ALNKRNAQLICEG----QGLDLLMERALKFRDPLLMKMIRNISQH-EGPTQNQFIDYIGD 490

Query: 572 LVEIIKN 578
           L  IIKN
Sbjct: 491 LARIIKN 497

This family consists of several eukaryotic kinesin-associated (KAP) proteins. Kinesins are intracellular multimeric transport motor proteins that move cellular cargo on microtubule tracks. It has been shown that the sea urchin KRP85/95 holoenzyme associates with a KAP115 non-motor protein, forming a heterotrimeric complex in vitro, called the Kinesin-II. Length = 708

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 45.9 bits (110), Expect = 6e-07
 Identities = 18/40 (45%), Positives = 26/40 (65%)

Query: 392 NPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLS 431
           +P+N+  +   G + PLVQLLS PD ++QE    AL NL+
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLA 40

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 52.4 bits (126), Expect = 7e-07
 Identities = 50/162 (30%), Positives = 76/162 (46%), Gaps = 4/162 (2%)

Query: 400 ANNGGIRPLVQLLSYPDSKIQEHTVTALLNL-SLDETNKRHIAREGAIPAIIEILQNGTN 458
           A N  +R L+QLLS    + QE   + L ++ S  +     +A +  I   I++L N T 
Sbjct: 606 AANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTE 665

Query: 459 EARENSAAALFSLSM-LDENRVMVGNLNG-IPPLVNLLRYGSIRGKKDAATALFNLSINQ 516
                SA AL +LS  + ENR +       I PL+ L +  SI   + A  AL NL  + 
Sbjct: 666 AVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDP 725

Query: 517 SNKSRAIKAGIIPSLLKLLEDKAL-GMVDEALSILQLLASHP 557
              + A+   II  L ++L +  L G  + A ++ QLL   P
Sbjct: 726 EVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFP 767

Length = 2102

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 51.6 bits (124), Expect = 1e-06
 Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 1/86 (1%)

Query: 387 MLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRH-IAREGA 445
           +L+ E  +++  I   GGI PLVQLL     K +E + T L NL     + R  +   GA
Sbjct: 472 ILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGA 531

Query: 446 IPAIIEILQNGTNEARENSAAALFSL 471
           +PA++ +L+NG  + +E +A  L  L
Sbjct: 532 VPALLWLLKNGGPKGQEIAAKTLTKL 557

Length = 2102

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 44.7 bits (107), Expect = 2e-06
 Identities = 13/40 (32%), Positives = 23/40 (57%)

Query: 392 NPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLS 431
           + +N+  + + GG+  LV+LL   D ++ +    AL NLS
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 42.1 bits (100), Expect = 1e-05
 Identities = 15/39 (38%), Positives = 21/39 (53%)

Query: 475 DENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLS 513
            EN+  V     +PPLV LL       +++AA AL NL+
Sbjct: 2   PENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLA 40

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score = 45.7 bits (108), Expect = 6e-05
 Identities = 36/144 (25%), Positives = 70/144 (48%), Gaps = 6/144 (4%)

Query: 399 IANNGGIRPLVQLLSYPDSKIQEHTVTALLNL-SLDETNKRHIAREGAIPAIIEILQNGT 457
           + + G    LV+LLS+  +KIQ   + ++ N+ +  +   + I   GA+ A   +L +  
Sbjct: 281 VLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPK 340

Query: 458 NEARENSAAALFSLSMLDENRVM-VGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQ 516
              R+ +   + +++  +  ++  V + N IPPL++LL     + KK+A  A+ N +   
Sbjct: 341 ENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGG 400

Query: 517 SNKSRAIK----AGIIPSLLKLLE 536
            N+   I+     G I  L  LL+
Sbjct: 401 LNRPDIIRYLVSQGFIKPLCDLLD 424

Length = 526

>gnl|CDD|192832 pfam11789, zf-Nse, Zinc-finger of the MIZ type in Nse subunit

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 275 CPVTLEIMTDPVI-VATGQTYERESIQRWL-NSNHKTCPKTG 314
           CP+TL+   +PV        +E+++I   L  +    CP  G
Sbjct: 14  CPLTLQPFEEPVTSKKCNHVFEKDAILSMLRRNKTVKCPVAG 55

Nse1 and Nse2 are novel non-SMC subunits of the fission yeast Smc5-6 DNA repair complex. This family is the zinc-finger domain similar to the MIZ type of zinc-finger. Length = 57

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 38.2 bits (90), Expect = 3e-04
 Identities = 18/39 (46%), Positives = 23/39 (58%)

Query: 475 DENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLS 513
           DEN+  V +  G+P LV LL+       K+AA AL NLS
Sbjct: 2   DENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 40.9 bits (96), Expect = 0.003
 Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 2/79 (2%)

Query: 459 EARENSAAALFSLSMLDEN-RVMVG-NLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQ 516
           + +E + A L  L+   E  R  +G +   +P LV+LLR G++  K +AA  L  L   +
Sbjct: 30  QEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEE 89

Query: 517 SNKSRAIKAGIIPSLLKLL 535
             + + +  G IP LL LL
Sbjct: 90  DLRVKVLLGGCIPPLLSLL 108

Length = 2102

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	643
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.96
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.95
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.94
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.93
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.91
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.85
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.84
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	99.84
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.83
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.78
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.77
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.7
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.65
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.64
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	99.63
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.57
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.54
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.48
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.4
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.28
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.26
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.21
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.2
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.19
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.19
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.19
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	99.14
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.12
PRK09687	280	putative lyase; Provisional	99.02
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	99.02
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	99.01
PRK09687	280	putative lyase; Provisional	98.99
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.96
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	98.92
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	98.92
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.88
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	98.86
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.8
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.72
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.7
COG5113	929	UFD2 Ubiquitin fusion degradation protein 2 [Postt	98.68
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	98.65
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.65
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.65
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	98.63
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	98.59
KOG2042	943	consensus Ubiquitin fusion degradation protein-2 [	98.58
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.57
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	98.56
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.54
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	98.53
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.49
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.45
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.43
PHA02929	238	N1R/p28-like protein; Provisional	98.4
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.38
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.38
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	98.37
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	98.36
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.32
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	98.3
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	98.28
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	98.25
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.23
PF05536	543	Neurochondrin: Neurochondrin	98.22
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	98.2
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.17
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.17
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	98.11
KOG1293	678	consensus Proteins containing armadillo/beta-caten	98.09
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.06
PF05536	543	Neurochondrin: Neurochondrin	98.04
KOG2734	536	consensus Uncharacterized conserved protein [Funct	98.02
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.0
KOG1293	678	consensus Proteins containing armadillo/beta-caten	97.99
PTZ00429	746	beta-adaptin; Provisional	97.97
PHA02926	242	zinc finger-like protein; Provisional	97.95
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	97.92
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	97.91
PTZ00429	746	beta-adaptin; Provisional	97.88
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	97.88
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	97.83
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.83
TIGR02270	410	conserved hypothetical protein. Members are found	97.82
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	97.82
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	97.73
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	97.72
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	97.72
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	97.68
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	97.67
KOG0289	506	consensus mRNA splicing factor [General function p	97.66
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	97.66
PF14634	44	zf-RING_5: zinc-RING finger domain	97.66
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	97.64
KOG2973	353	consensus Uncharacterized conserved protein [Funct	97.64
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	97.59
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	97.59
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	97.54
KOG3678	832	consensus SARM protein (with sterile alpha and arm	97.53
COG5369	743	Uncharacterized conserved protein [Function unknow	97.5
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.5
KOG0297	391	consensus TNF receptor-associated factor [Signal t	97.49
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.49
KOG4413	524	consensus 26S proteasome regulatory complex, subun	97.45
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	97.43
KOG4413	524	consensus 26S proteasome regulatory complex, subun	97.41
KOG0212	675	consensus Uncharacterized conserved protein [Funct	97.4
COG5222	427	Uncharacterized conserved protein, contains RING Z	97.38
KOG0212	675	consensus Uncharacterized conserved protein [Funct	97.36
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.36
COG1413	335	FOG: HEAT repeat [Energy production and conversion	97.36
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.33
TIGR02270	410	conserved hypothetical protein. Members are found	97.22
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	97.2
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	97.19
KOG2660	331	consensus Locus-specific chromosome binding protei	97.15
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.14
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	97.13
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	97.03
COG5369	743	Uncharacterized conserved protein [Function unknow	97.03
COG1413	335	FOG: HEAT repeat [Energy production and conversion	97.02
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.02
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	96.9
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	96.83
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	96.82
PF05659	147	RPW8: Arabidopsis broad-spectrum mildew resistance	96.82
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	96.76
KOG1242	569	consensus Protein containing adaptin N-terminal re	96.75
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	96.75
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	96.73
KOG2259	823	consensus Uncharacterized conserved protein [Funct	96.71
KOG1242	569	consensus Protein containing adaptin N-terminal re	96.61
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	96.61
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	96.55
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	96.51
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	96.44
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	96.4
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	96.36
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	96.32
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	96.28
KOG1002	791	consensus Nucleotide excision repair protein RAD16	96.28
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	96.25
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	96.24
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	96.14
KOG3036	293	consensus Protein involved in cell differentiation	96.1
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	96.0
PF04641	260	Rtf2: Rtf2 RING-finger	95.91
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	95.88
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	95.81
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	95.81
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	95.75
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	95.73
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	95.7
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	95.68
COG5152	259	Uncharacterized conserved protein, contains RING a	95.67
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	95.64
COG5096	757	Vesicle coat complex, various subunits [Intracellu	95.5
KOG3036	293	consensus Protein involved in cell differentiation	95.5
KOG1824	1233	consensus TATA-binding protein-interacting protein	95.5
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	95.46
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	95.43
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	95.38
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	95.34
KOG3039	303	consensus Uncharacterized conserved protein [Funct	95.3
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	95.25
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	95.07
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	95.07
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	95.03
KOG2979	262	consensus Protein involved in DNA repair [General	94.99
KOG3039	303	consensus Uncharacterized conserved protein [Funct	94.97
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	94.83
COG5096	757	Vesicle coat complex, various subunits [Intracellu	94.81
PF05004	309	IFRD: Interferon-related developmental regulator (	94.77
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	94.75
KOG2259	823	consensus Uncharacterized conserved protein [Funct	94.6
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	94.59
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	94.55
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	94.51
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	94.48
KOG4367	699	consensus Predicted Zn-finger protein [Function un	94.32
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	94.19
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	94.18
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	94.12
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	94.09
KOG1824	1233	consensus TATA-binding protein-interacting protein	94.06
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	93.86
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	93.84
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	93.79
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	93.72
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	93.66
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	93.65
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	93.64
PF02891	50	zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041	93.59
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	93.44
KOG1788	2799	consensus Uncharacterized conserved protein [Funct	93.34
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	93.25
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	93.23
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	93.13
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	92.97
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	92.87
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	92.86
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	92.83
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	92.78
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	92.43
PF05004	309	IFRD: Interferon-related developmental regulator (	92.31
KOG0567	289	consensus HEAT repeat-containing protein [General	92.26
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	92.16
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	92.16
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	92.0
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	91.93
COG5219	1525	Uncharacterized conserved protein, contains RING Z	91.93
PF07814	361	WAPL: Wings apart-like protein regulation of heter	91.87
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	91.64
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	91.59
KOG3113	293	consensus Uncharacterized conserved protein [Funct	91.46
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	91.26
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	91.14
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	91.12
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	90.91
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	90.87
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	90.76
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	90.74
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	90.45
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	90.4
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	90.29
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	90.28
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	89.9
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	89.8
KOG0301	745	consensus Phospholipase A2-activating protein (con	89.8
PF08045	257	CDC14: Cell division control protein 14, SIN compo	89.57
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	89.54
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	89.45
PF08045	257	CDC14: Cell division control protein 14, SIN compo	89.06
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	88.83
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	88.78
KOG0825	1134	consensus PHD Zn-finger protein [General function	88.76
KOG1001	674	consensus Helicase-like transcription factor HLTF/	88.49
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	88.41
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	88.36
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	88.24
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	88.05
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	88.02
KOG3800	300	consensus Predicted E3 ubiquitin ligase containing	87.96
COG5109	396	Uncharacterized conserved protein, contains RING Z	87.78
KOG0883	518	consensus Cyclophilin type, U box-containing pepti	86.63
KOG2930	114	consensus SCF ubiquitin ligase, Rbx1 component [Po	86.54
KOG4653	982	consensus Uncharacterized conserved protein [Funct	86.53
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	86.5
KOG0567	289	consensus HEAT repeat-containing protein [General	86.39
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	86.3
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	85.82
COG5175	480	MOT2 Transcriptional repressor [Transcription]	85.79
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	85.29
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	85.01
KOG0298	1394	consensus DEAD box-containing helicase-like transc	84.91
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	84.81
PRK14707	2710	hypothetical protein; Provisional	84.77
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	84.72
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	84.44
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	84.23
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	83.69
PRK14707	2710	hypothetical protein; Provisional	83.63
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	83.5
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	83.48
KOG0414	1251	consensus Chromosome condensation complex Condensi	83.37
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	83.15
COG5627	275	MMS21 DNA repair protein MMS21 [DNA replication, r	83.14
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	82.95
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	82.79
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	82.39
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	82.29
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	82.23
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	81.48
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	80.91
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	80.57
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	80.01

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.96  E-value=3e-27  Score=284.20  Aligned_cols=281  Identities=20%  Similarity=0.205  Sum_probs=253.6

Q ss_pred             hHHHHHHHHHhhcCC--CHHHHHHHHHHHHHhhhhChhhHHHHHh-hCChHHHHHHhcCCCHHHHHHHHHHHHhcccChh
Q 006494          359 LIEEICSLIQNLSSS--QLNIKRDSVMKIRMLSKENPDNRILIAN-NGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDET  435 (643)
Q Consensus       359 ~~~~i~~Lv~~L~s~--~~~~~~~Al~~L~~La~~~~~~r~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~  435 (643)
                      ....+..+++.|+++  +++.+..|+..|+.+++.++++|..+++ .|+||.|+.+|.+++..+|++|+.+|.||+.+++
T Consensus        11 ~~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~   90 (2102)
T PLN03200         11 TLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEED   90 (2102)
T ss_pred             hHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHH
Confidence            357899999999966  7899999999999999999999999986 8999999999999999999999999999999999


Q ss_pred             hHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHcccc---ccccch-hhccCChHHHHHHcccCCh---hhHHHHHHH
Q 006494          436 NKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSML---DENRVM-VGNLNGIPPLVNLLRYGSI---RGKKDAATA  508 (643)
Q Consensus       436 ~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~---~~~k~~-i~~~g~i~~Lv~lL~s~~~---~~k~~A~~a  508 (643)
                      ++..|+..|++++|+++|++|++++|++|+++|++|+..   +.++.. +...|+||+|+.++++++.   .++..|+.+
T Consensus        91 nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~A  170 (2102)
T PLN03200         91 LRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGA  170 (2102)
T ss_pred             HHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHH
Confidence            999999999999999999999999999999999999976   445545 4569999999999998742   345677899


Q ss_pred             HHHhhcCCCchH-HHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC-hhhHHHHHhcCcHHHHHHHHhcCC-hHHHH
Q 006494          509 LFNLSINQSNKS-RAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH-PEGRNEIGRLSFIETLVEIIKNGT-PKNKE  585 (643)
Q Consensus       509 L~nLs~~~en~~-~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~s-~~~ke  585 (643)
                      |+|||.+++++. .++++|++|.|+.+|.++++..+..|+++|.+++.+ ++++..+++.|+||.|+++|++++ +..|+
T Consensus       171 L~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE  250 (2102)
T PLN03200        171 LRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRA  250 (2102)
T ss_pred             HHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHH
Confidence            999999999975 458999999999999999999999999999999876 779999999999999999998754 58999


Q ss_pred             HHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCC---------HHHHHHHHHHHHHhhhc
Q 006494          586 CATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGT---------NRGQRKANSLLQHMSKR  639 (643)
Q Consensus       586 ~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~---------~~~k~~A~~lL~~l~~~  639 (643)
                      +|+++|.+||.++++....+.+.|+++.|+.++...+         ...++.|.+.|.++++.
T Consensus       251 ~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg  313 (2102)
T PLN03200        251 EAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGG  313 (2102)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999999999987544         34589999999999873

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.95  E-value=2.7e-26  Score=275.99  Aligned_cols=281  Identities=24%  Similarity=0.279  Sum_probs=250.2

Q ss_pred             hHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHH
Q 006494          359 LIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKR  438 (643)
Q Consensus       359 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~  438 (643)
                      ..+.++.|++.|.+++...|..|++.|+++++.+++++..++++|+||+|+++|++++.++|++|+++|.|++.++.++.
T Consensus       444 ~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir  523 (2102)
T PLN03200        444 GREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIR  523 (2102)
T ss_pred             HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHH
Confidence            55789999999999999999999999999999999999999999999999999999999999999999999998876655


Q ss_pred             HHH-hcCChHHHHHHHccCCHHHHHHHHHHHHHcccccccc-------------------------------------ch
Q 006494          439 HIA-REGAIPAIIEILQNGTNEARENSAAALFSLSMLDENR-------------------------------------VM  480 (643)
Q Consensus       439 ~i~-~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k-------------------------------------~~  480 (643)
                      .++ +.|++++|+++|++++.+.+..|+++|++|+...+..                                     ..
T Consensus       524 ~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~  603 (2102)
T PLN03200        524 ACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVRE  603 (2102)
T ss_pred             HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHH
Confidence            554 8899999999999999999999999999996322111                                     01


Q ss_pred             -hhccCChHHHHHHcccCChhhHHHHHHHHHHhhc-CCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC--
Q 006494          481 -VGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSI-NQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH--  556 (643)
Q Consensus       481 -i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~-~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~--  556 (643)
                       ....|+++.|++++++++...++.|+++|.|++. +++++..++..|++++|+.+|.+++.+++.+|+++|.||+..  
T Consensus       604 g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~  683 (2102)
T PLN03200        604 GSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIK  683 (2102)
T ss_pred             hhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCC
Confidence             1136899999999999999999999999999997 555688899999999999999998889999999999999964  


Q ss_pred             hhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 006494          557 PEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHM  636 (643)
Q Consensus       557 ~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l  636 (643)
                      ++.+..+++.|++++|+++|++.+...++.|+.+|.+++.... ....+.+.|++++|++++++|+++.|+.|++.|..|
T Consensus       684 ~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e-~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L  762 (2102)
T PLN03200        684 ENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPE-VAAEALAEDIILPLTRVLREGTLEGKRNAARALAQL  762 (2102)
T ss_pred             HHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCch-HHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence            4556778899999999999999999999999999999999765 455566789999999999999999999999999999


Q ss_pred             hhcc
Q 006494          637 SKRE  640 (643)
Q Consensus       637 ~~~~  640 (643)
                      ++..
T Consensus       763 ~~~~  766 (2102)
T PLN03200        763 LKHF  766 (2102)
T ss_pred             HhCC
Confidence            8754

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=5.9e-26  Score=225.85  Aligned_cols=276  Identities=22%  Similarity=0.352  Sum_probs=257.0

Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHH
Q 006494          361 EEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHI  440 (643)
Q Consensus       361 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i  440 (643)
                      ..+..|+..+.++..++|+.++.+|-+|+. .+.+|..++..|++.+|.++-++.|..+|.++..+|.|+....+|+..+
T Consensus       126 ~Gl~~Li~qmmtd~vevqcnaVgCitnLaT-~d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~L  204 (550)
T KOG4224|consen  126 LGLDLLILQMMTDGVEVQCNAVGCITNLAT-FDSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVL  204 (550)
T ss_pred             cChHHHHHHhcCCCcEEEeeehhhhhhhhc-cccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhh
Confidence            456778877778888999999999999994 5899999999999999999889999999999999999999999999999


Q ss_pred             HhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccC--ChHHHHHHcccCChhhHHHHHHHHHHhhcCCCc
Q 006494          441 AREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLN--GIPPLVNLLRYGSIRGKKDAATALFNLSINQSN  518 (643)
Q Consensus       441 ~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g--~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en  518 (643)
                      +.+|++|.|+.++++++.++++.+..++.+++.+..+|..+.+.+  .++.|+++++++++.+|..|..+|.||++..+.
T Consensus       205 V~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Y  284 (550)
T KOG4224|consen  205 VHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEY  284 (550)
T ss_pred             hccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchh
Confidence            999999999999999999999999999999999999999999977  999999999999999999999999999999999


Q ss_pred             hHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCC-hHHHHHHHHHHHHhccC
Q 006494          519 KSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGT-PKNKECATSVLLELGLN  597 (643)
Q Consensus       519 ~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s-~~~ke~A~~~L~~L~~~  597 (643)
                      ...++++|.+|.++++|.++.....-..++++.|++-++-+..-|+++|++.+||.+|+-++ ++.|-+|+.+|++|+..
T Consensus       285 q~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAas  364 (550)
T KOG4224|consen  285 QREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAAS  364 (550)
T ss_pred             hhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhh
Confidence            99999999999999999888777888889999999999999999999999999999999865 66999999999999998


Q ss_pred             CHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhh
Q 006494          598 NSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMS  637 (643)
Q Consensus       598 ~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~  637 (643)
                      .......+.+.|++|.|.+++.+|.-..+..-...+..|.
T Consensus       365 se~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~La  404 (550)
T KOG4224|consen  365 SEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLA  404 (550)
T ss_pred             hhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHH
Confidence            8888888999999999999999999888877777766654

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=5.7e-25  Score=218.85  Aligned_cols=277  Identities=22%  Similarity=0.303  Sum_probs=253.8

Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHH
Q 006494          361 EEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHI  440 (643)
Q Consensus       361 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i  440 (643)
                      +++..+.++-++.+..+|..+...|.+++ ++.++|+.++.+|++|.|+.+++++|.++|+.+.+++.|++.+..++..+
T Consensus       167 GaL~pltrLakskdirvqrnatgaLlnmT-hs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~L  245 (550)
T KOG4224|consen  167 GALEPLTRLAKSKDIRVQRNATGALLNMT-HSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKIL  245 (550)
T ss_pred             cchhhhHhhcccchhhHHHHHHHHHHHhh-hhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHH
Confidence            56777888667888899999999999999 78999999999999999999999999999999999999999999999999


Q ss_pred             HhcC--ChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCc
Q 006494          441 AREG--AIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSN  518 (643)
Q Consensus       441 ~~~g--~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en  518 (643)
                      +..+  .++.|+.++.++++.++-.|.-+|.+|+.+.+++..|.+.|++|.++.+|++.........+.++.|++.++-|
T Consensus       246 aqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplN  325 (550)
T KOG4224|consen  246 AQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLN  325 (550)
T ss_pred             HhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCc
Confidence            9766  99999999999999999999999999999999999999999999999999988777777888999999999999


Q ss_pred             hHHHHhcCcHHHHHHHhcc-CChhhHHHHHHHHHHHhCC-hhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhcc
Q 006494          519 KSRAIKAGIIPSLLKLLED-KALGMVDEALSILQLLASH-PEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGL  596 (643)
Q Consensus       519 ~~~iv~~G~v~~Lv~lL~~-~~~~~~~~Al~iL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~  596 (643)
                      ...++++|.+.+|+++|.. .+.+.+-+|..+|+||+.. ..++..|.+.|+||.+.+++..++-..|+.-..++..|+-
T Consensus       326 e~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal  405 (550)
T KOG4224|consen  326 EVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLAL  405 (550)
T ss_pred             ccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHh
Confidence            9999999999999999987 4556999999999999995 7789999999999999999999998888887777777776


Q ss_pred             CCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhhc
Q 006494          597 NNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSKR  639 (643)
Q Consensus       597 ~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~~  639 (643)
                      ++ .....+.+.|+++.|.....+.+.+++.+|+..|-+|+..
T Consensus       406 ~d-~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~  447 (550)
T KOG4224|consen  406 ND-NDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSD  447 (550)
T ss_pred             cc-ccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhh
Confidence            54 4456678899999999999999999999999999999753

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=1e-22  Score=216.64  Aligned_cols=278  Identities=18%  Similarity=0.226  Sum_probs=246.2

Q ss_pred             HHHHHHHHhhc-CCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccCh-hhHH
Q 006494          361 EEICSLIQNLS-SSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDE-TNKR  438 (643)
Q Consensus       361 ~~i~~Lv~~L~-s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~-~~k~  438 (643)
                      +.++.+|..|. ..++..+.+|+++|.+++.++.+.-..++++|++|.++.++.+++..+++.|+++|.|++.+. ..|.
T Consensus       109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd  188 (514)
T KOG0166|consen  109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRD  188 (514)
T ss_pred             CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHH
Confidence            67999999997 456899999999999999999999999999999999999999999999999999999999765 5566


Q ss_pred             HHHhcCChHHHHHHHccCCH-HHHHHHHHHHHHccccccccchhhc-cCChHHHHHHcccCChhhHHHHHHHHHHhhcCC
Q 006494          439 HIAREGAIPAIIEILQNGTN-EARENSAAALFSLSMLDENRVMVGN-LNGIPPLVNLLRYGSIRGKKDAATALFNLSINQ  516 (643)
Q Consensus       439 ~i~~~g~i~~Lv~lL~~~~~-~~~~~Aa~~L~~Ls~~~~~k~~i~~-~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~  516 (643)
                      .+.+.|++++|+.++...+. ....+++++|.||+....-...+.. ..++|.|..++.+.+..+..+|++||.+|+..+
T Consensus       189 ~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~  268 (514)
T KOG0166|consen  189 YVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGS  268 (514)
T ss_pred             HHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence            67799999999999987754 6778999999999976643333333 578999999999999999999999999999644


Q ss_pred             -CchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCCh-hhHHHHHhcCcHHHHHHHHhc-CChHHHHHHHHHHHH
Q 006494          517 -SNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHP-EGRNEIGRLSFIETLVEIIKN-GTPKNKECATSVLLE  593 (643)
Q Consensus       517 -en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~-~~~~~i~~~g~i~~Lv~lL~~-~s~~~ke~A~~~L~~  593 (643)
                       +....++++|+++.|+.+|......++.-|+.++.|++... .-.+.+...|+++.|..++.. .....|..|++++.|
T Consensus       269 ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSN  348 (514)
T KOG0166|consen  269 NEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISN  348 (514)
T ss_pred             hHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHH
Confidence             45667788999999999999888889999999999999984 556677788999999999984 455688999999999


Q ss_pred             hccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494          594 LGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK  638 (643)
Q Consensus       594 L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~  638 (643)
                      ++.++.+..+.+.+.|++|.|+.+++++.-+.|+.|++.+.++.-
T Consensus       349 ItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts  393 (514)
T KOG0166|consen  349 ITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTS  393 (514)
T ss_pred             hhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcc
Confidence            999999999999999999999999999999999999999998864

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=3.4e-20  Score=197.51  Aligned_cols=281  Identities=20%  Similarity=0.245  Sum_probs=244.5

Q ss_pred             hHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCH-HHHHHHHHHHHhcccChhhH
Q 006494          359 LIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDS-KIQEHTVTALLNLSLDETNK  437 (643)
Q Consensus       359 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~-~~~~~a~~~L~nLs~~~~~k  437 (643)
                      +.+.++.++.++.+++.+++..|+++|.+++.+++..|..+.+.|++++|+.++...+. ....++.++|.||+.+.+-.
T Consensus       150 ~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~  229 (514)
T KOG0166|consen  150 DAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPS  229 (514)
T ss_pred             cCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCC
Confidence            45789999999999999999999999999999999999999999999999999988765 67889999999999765322


Q ss_pred             HHHH-hcCChHHHHHHHccCCHHHHHHHHHHHHHccccc-cccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcC
Q 006494          438 RHIA-REGAIPAIIEILQNGTNEARENSAAALFSLSMLD-ENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSIN  515 (643)
Q Consensus       438 ~~i~-~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~  515 (643)
                      ..+. -..++|.|..++.+.+.++...|++++.+|+... +.-..+.+.|+++.|+.+|.+.+..++.-|+.++.|+...
T Consensus       230 P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG  309 (514)
T KOG0166|consen  230 PPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTG  309 (514)
T ss_pred             CcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeec
Confidence            2222 3457999999999999999999999999999544 4555667799999999999999988999999999999886


Q ss_pred             CCc-hHHHHhcCcHHHHHHHhcc-CChhhHHHHHHHHHHHhCC-hhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHH
Q 006494          516 QSN-KSRAIKAGIIPSLLKLLED-KALGMVDEALSILQLLASH-PEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLL  592 (643)
Q Consensus       516 ~en-~~~iv~~G~v~~Lv~lL~~-~~~~~~~~Al~iL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~  592 (643)
                      .+. ...++..|+++.|..++.. ....++.+|++++.|++.. .+...+++++|.+|.|+.+|+++.-+.|..|++++.
T Consensus       310 ~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIs  389 (514)
T KOG0166|consen  310 SDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAIS  389 (514)
T ss_pred             cHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHH
Confidence            665 6677889999999999984 5566899999999999987 678889999999999999999999999999999999


Q ss_pred             HhccCC-HHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhhc
Q 006494          593 ELGLNN-SYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSKR  639 (643)
Q Consensus       593 ~L~~~~-~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~~  639 (643)
                      |++.++ ++....+++.|++++|..++..-+.+.-..+...|.++-+.
T Consensus       390 N~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~  437 (514)
T KOG0166|consen  390 NLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKV  437 (514)
T ss_pred             hhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHH
Confidence            999765 55667788899999999999888888888888888887653

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.84  E-value=3e-20  Score=183.85  Aligned_cols=279  Identities=14%  Similarity=0.162  Sum_probs=239.4

Q ss_pred             hHHHHHHHHHhhc-CCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhh-
Q 006494          359 LIEEICSLIQNLS-SSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETN-  436 (643)
Q Consensus       359 ~~~~i~~Lv~~L~-s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~-  436 (643)
                      +.+.++++|+.+. ....-.+.+|++.|-+++......-+.++++|++|.++.+|.+++.++++.++++|.|++-+... 
T Consensus       112 daGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~  191 (526)
T COG5064         112 DAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGC  191 (526)
T ss_pred             hccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhH
Confidence            4578999999995 44555788999999999977666666678999999999999999999999999999999977654 


Q ss_pred             HHHHHhcCChHHHHHHHccCC--HHHHHHHHHHHHHccccccccchhh-ccCChHHHHHHcccCChhhHHHHHHHHHHhh
Q 006494          437 KRHIAREGAIPAIIEILQNGT--NEARENSAAALFSLSMLDENRVMVG-NLNGIPPLVNLLRYGSIRGKKDAATALFNLS  513 (643)
Q Consensus       437 k~~i~~~g~i~~Lv~lL~~~~--~~~~~~Aa~~L~~Ls~~~~~k~~i~-~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs  513 (643)
                      |..+...|++++++.+|.+..  .....++.++|.||+....-.-.-. -..++|.|.+++-+.++++..+|++||..|+
T Consensus       192 RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYls  271 (526)
T COG5064         192 RDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLS  271 (526)
T ss_pred             HHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhc
Confidence            566669999999999998753  4677899999999985433211111 1458999999999999999999999999999


Q ss_pred             cCCC-chHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChh-hHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHH
Q 006494          514 INQS-NKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPE-GRNEIGRLSFIETLVEIIKNGTPKNKECATSVL  591 (643)
Q Consensus       514 ~~~e-n~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~-~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L  591 (643)
                      -.+. ....+++.|..+.|+++|.+++..++.-|+..+.|+....+ ....++..|+++.+-.+|.+..+..|..|++++
T Consensus       272 Dg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTi  351 (526)
T COG5064         272 DGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTI  351 (526)
T ss_pred             cCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheee
Confidence            7554 45667789999999999999888999999999999999854 456677889999999999988889999999999


Q ss_pred             HHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhh
Q 006494          592 LELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMS  637 (643)
Q Consensus       592 ~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~  637 (643)
                      .++..++.+..+.+++.+.+|+|+.++..-.-..|+.|++.+.+..
T Consensus       352 SNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNat  397 (526)
T COG5064         352 SNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNAT  397 (526)
T ss_pred             cccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999999999999999999999888764

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=99.84  E-value=1.5e-21  Score=157.76  Aligned_cols=72  Identities=51%  Similarity=0.943  Sum_probs=63.5

Q ss_pred             CCCcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCchhhhHHHHHHHHhhcc
Q 006494          269 VPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLIVQWCEKNN  340 (643)
Q Consensus       269 ~p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~~~~  340 (643)
                      +|++|.||||+++|.|||++++||||||.+|++|+..++.+||+|++++...+++||..||..|++|+.+|.
T Consensus         1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~   72 (73)
T PF04564_consen    1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAENK   72 (73)
T ss_dssp             SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCT
T ss_pred             CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHcc
Confidence            599999999999999999999999999999999999988999999999999999999999999999999874

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.83  E-value=7e-20  Score=181.30  Aligned_cols=277  Identities=20%  Similarity=0.249  Sum_probs=240.7

Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHHHHHh-hhhChhhHHHHHhhCChHHHHHHhc-CCCHHHHHHHHHHHHhcccChhhH
Q 006494          360 IEEICSLIQNLSSSQLNIKRDSVMKIRML-SKENPDNRILIANNGGIRPLVQLLS-YPDSKIQEHTVTALLNLSLDETNK  437 (643)
Q Consensus       360 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~L-a~~~~~~r~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~nLs~~~~~k  437 (643)
                      ...+|.|.+.|.|.+.+.+..|+...|.+ +++....-..+.++|++|.++.++. ....-.+-.|.++|-|++....++
T Consensus        70 ~~elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~Q  149 (526)
T COG5064          70 YSELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQ  149 (526)
T ss_pred             hhhhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccc
Confidence            34789999999999999999999988865 4444444556778999999999994 445566789999999999988888


Q ss_pred             HHHH-hcCChHHHHHHHccCCHHHHHHHHHHHHHcccccc-ccchhhccCChHHHHHHcccCC--hhhHHHHHHHHHHhh
Q 006494          438 RHIA-REGAIPAIIEILQNGTNEARENSAAALFSLSMLDE-NRVMVGNLNGIPPLVNLLRYGS--IRGKKDAATALFNLS  513 (643)
Q Consensus       438 ~~i~-~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~-~k~~i~~~g~i~~Lv~lL~s~~--~~~k~~A~~aL~nLs  513 (643)
                      ..++ ++|++|.++.+|.+++.++++++.++|.|++.+.+ .|..+.+.|++.+|+.++.+..  ....+++.++|.|||
T Consensus       150 TkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlc  229 (526)
T COG5064         150 TKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLC  229 (526)
T ss_pred             eEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhh
Confidence            7776 99999999999999999999999999999998776 7888889999999999998764  478899999999999


Q ss_pred             cCC---CchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCCh-hhHHHHHhcCcHHHHHHHHhcCChHHHHHHHH
Q 006494          514 INQ---SNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHP-EGRNEIGRLSFIETLVEIIKNGTPKNKECATS  589 (643)
Q Consensus       514 ~~~---en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~-~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~  589 (643)
                      ...   ++...+  ..++|.|.+++.+.++++...|++++..|+..+ +.-.++.+.|+.+.|+++|.+.+..++.-|+.
T Consensus       230 RGknP~P~w~~i--sqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR  307 (526)
T COG5064         230 RGKNPPPDWSNI--SQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALR  307 (526)
T ss_pred             CCCCCCCchHHH--HHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHH
Confidence            732   344444  347999999999999999999999999999984 67778888999999999999999999999999


Q ss_pred             HHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494          590 VLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK  638 (643)
Q Consensus       590 ~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~  638 (643)
                      ...++..++....+.+++.|+++.+..++.+.-++.|+.|++.+.++..
T Consensus       308 ~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITA  356 (526)
T COG5064         308 SVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITA  356 (526)
T ss_pred             hhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeeccccc
Confidence            9999999998888889999999999999999999999999999988753

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.78  E-value=5.9e-17  Score=182.00  Aligned_cols=279  Identities=22%  Similarity=0.276  Sum_probs=228.8

Q ss_pred             hHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHH
Q 006494          359 LIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKR  438 (643)
Q Consensus       359 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~  438 (643)
                      .++.++.|++.|.+++.+....++..|..|+ -..+|+..+.+.|+|+.|++++.+++.+.+..++.+|.|||.++++|.
T Consensus       288 ~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLS-i~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~  366 (708)
T PF05804_consen  288 NKGIVSLLVKCLDRENEELLILAVTFLKKLS-IFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRS  366 (708)
T ss_pred             hcCCHHHHHHHHcCCCHHHHHHHHHHHHHHc-CCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHH
Confidence            4678999999999999999999999999999 567899999999999999999999999999999999999999999999


Q ss_pred             HHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccC-ChhhHHHHHHHHHHhhcCCC
Q 006494          439 HIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYG-SIRGKKDAATALFNLSINQS  517 (643)
Q Consensus       439 ~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~-~~~~k~~A~~aL~nLs~~~e  517 (643)
                      .|++.|.+|.|+.+|.+++  .+..+.++|.+||.++++|..+...++++.|++++-++ ..++...++.++.||+.++.
T Consensus       367 ~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~r  444 (708)
T PF05804_consen  367 QMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKR  444 (708)
T ss_pred             HHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHH
Confidence            9999999999999998764  45678999999999999999999999999999987554 55566667777777777777


Q ss_pred             chHHHHhcCcHHHHHHH-------------------------------------hcc-CChhhHHHHHHHHHHH------
Q 006494          518 NKSRAIKAGIIPSLLKL-------------------------------------LED-KALGMVDEALSILQLL------  553 (643)
Q Consensus       518 n~~~iv~~G~v~~Lv~l-------------------------------------L~~-~~~~~~~~Al~iL~nL------  553 (643)
                      |...+.+.|+++.|++.                                     +.. .+.+..-+++++|+||      
T Consensus       445 naqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld  524 (708)
T PF05804_consen  445 NAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLD  524 (708)
T ss_pred             HHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcC
Confidence            77766666666554322                                     111 1223334455555555      


Q ss_pred             --------------------------------------hCChhhHHHHHhcCcHHHHHHHHhcC--ChHHHHHHHHHHHH
Q 006494          554 --------------------------------------ASHPEGRNEIGRLSFIETLVEIIKNG--TPKNKECATSVLLE  593 (643)
Q Consensus       554 --------------------------------------a~~~~~~~~i~~~g~i~~Lv~lL~~~--s~~~ke~A~~~L~~  593 (643)
                                                            |..+.....+++.|.++.|+++|+..  +++.--..+.++..
T Consensus       525 ~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~  604 (708)
T PF05804_consen  525 WAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQ  604 (708)
T ss_pred             HHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHH
Confidence                                                  44455666677889999999999874  45666677888899


Q ss_pred             hccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhhcc
Q 006494          594 LGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSKRE  640 (643)
Q Consensus       594 L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~~~  640 (643)
                      +..++..+...+.+.+++..|+.++++.++.+++.|-.+|-.+.++.
T Consensus       605 ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d  651 (708)
T PF05804_consen  605 LLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYD  651 (708)
T ss_pred             HHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC
Confidence            99998877777777899999999999999999999999999887643

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.77  E-value=6.3e-17  Score=181.74  Aligned_cols=256  Identities=20%  Similarity=0.245  Sum_probs=221.2

Q ss_pred             CHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHHHH
Q 006494          374 QLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEIL  453 (643)
Q Consensus       374 ~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL  453 (643)
                      .....+.+...|.+++ .++.+...+.+.|.++.|+++|.+++.++...+++.|.+||...+||..|.+.|+++.|++++
T Consensus       262 QeqLlrv~~~lLlNLA-ed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl  340 (708)
T PF05804_consen  262 QEQLLRVAFYLLLNLA-EDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLL  340 (708)
T ss_pred             HHHHHHHHHHHHHHHh-cChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHh
Confidence            3445566788899999 788899999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHH
Q 006494          454 QNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLK  533 (643)
Q Consensus       454 ~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~  533 (643)
                      .+++.+.+..+..+|+|||++.+.|..|++.|.+|.|+.+|.+++  .+..++.+|+|||..+++|..+...+++|.|++
T Consensus       341 ~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~  418 (708)
T PF05804_consen  341 PSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQ  418 (708)
T ss_pred             cCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHH
Confidence            999999999999999999999999999999999999999998654  456789999999999999999999999999999


Q ss_pred             Hhcc-CChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHH
Q 006494          534 LLED-KALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYE  612 (643)
Q Consensus       534 lL~~-~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~  612 (643)
                      +|.. +++.+..++++++.||+.++.+.+.+.+.++++.|++......+   ...+.++.|++.+++.....+  .+.++
T Consensus       419 ~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D---~lLlKlIRNiS~h~~~~k~~f--~~~i~  493 (708)
T PF05804_consen  419 MLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRD---PLLLKLIRNISQHDGPLKELF--VDFIG  493 (708)
T ss_pred             HHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhccc---HHHHHHHHHHHhcCchHHHHH--HHHHH
Confidence            9866 45567777899999999999999999998999999987655432   235679999999986544444  35788


Q ss_pred             HHHHHHhhC-CHHHHHHHHHHHHHhh
Q 006494          613 HLVEITRCG-TNRGQRKANSLLQHMS  637 (643)
Q Consensus       613 ~L~~ll~~g-~~~~k~~A~~lL~~l~  637 (643)
                      .|+.++.++ ++...--+..+|.+|.
T Consensus       494 ~L~~~v~~~~~ee~~vE~LGiLaNL~  519 (708)
T PF05804_consen  494 DLAKIVSSGDSEEFVVECLGILANLT  519 (708)
T ss_pred             HHHHHhhcCCcHHHHHHHHHHHHhcc
Confidence            888888776 5666677777777764

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.70  E-value=2.3e-15  Score=165.42  Aligned_cols=281  Identities=20%  Similarity=0.243  Sum_probs=232.8

Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccC---hhhH
Q 006494          361 EEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLD---ETNK  437 (643)
Q Consensus       361 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~---~~~k  437 (643)
                      -.++..+.+|.+.++.+|-.|+..+..+++.+.+.|..+.+.|+|+.||.+|.+...++|.+|+.+|.||...   ++||
T Consensus       233 ~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK  312 (717)
T KOG1048|consen  233 PTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK  312 (717)
T ss_pred             cccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence            4688889999999999999999999999999999999999999999999999999999999999999999853   4689


Q ss_pred             HHHHhcCChHHHHHHHcc-CCHHHHHHHHHHHHHccccccccch------------------------------------
Q 006494          438 RHIAREGAIPAIIEILQN-GTNEARENSAAALFSLSMLDENRVM------------------------------------  480 (643)
Q Consensus       438 ~~i~~~g~i~~Lv~lL~~-~~~~~~~~Aa~~L~~Ls~~~~~k~~------------------------------------  480 (643)
                      ..|.+.++|+.++++|+. +|.+++++.+++|+||+..|..|..                                    
T Consensus       313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~  392 (717)
T KOG1048|consen  313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFR  392 (717)
T ss_pred             hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceeee
Confidence            999999999999999986 7999999999999999877554332                                    


Q ss_pred             -------------------hhc-cCChHHHHHHccc--------------------------------------------
Q 006494          481 -------------------VGN-LNGIPPLVNLLRY--------------------------------------------  496 (643)
Q Consensus       481 -------------------i~~-~g~i~~Lv~lL~s--------------------------------------------  496 (643)
                                         +.+ .|.|..|+..+++                                            
T Consensus       393 n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~  472 (717)
T KOG1048|consen  393 NVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARL  472 (717)
T ss_pred             hhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhccccc
Confidence                               222 2566666666540                                            


Q ss_pred             ----------------------------------------------------------CChhhHHHHHHHHHHhhcCCC-
Q 006494          497 ----------------------------------------------------------GSIRGKKDAATALFNLSINQS-  517 (643)
Q Consensus       497 ----------------------------------------------------------~~~~~k~~A~~aL~nLs~~~e-  517 (643)
                                                                                .+..+.+.++.||.||+.... 
T Consensus       473 ~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~  552 (717)
T KOG1048|consen  473 PGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWT  552 (717)
T ss_pred             ccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCc
Confidence                                                                      011223355666666664322 


Q ss_pred             ----chHHH-HhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCC------hHHHHH
Q 006494          518 ----NKSRA-IKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGT------PKNKEC  586 (643)
Q Consensus       518 ----n~~~i-v~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s------~~~ke~  586 (643)
                          .+..+ ....+.++|+++|..++..++..+..+|.||+.+..++..|. .++++.|++.|..+.      ++.-..
T Consensus       553 ~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~  631 (717)
T KOG1048|consen  553 WSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRA  631 (717)
T ss_pred             chhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHH
Confidence                12333 456778899999999999999999999999999999999998 589999999998743      466677


Q ss_pred             HHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhC-CHHHHHHHHHHHHHhhhccCC
Q 006494          587 ATSVLLELGLNNSYFILAALQYGVYEHLVEITRCG-TNRGQRKANSLLQHMSKREHI  642 (643)
Q Consensus       587 A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g-~~~~k~~A~~lL~~l~~~~e~  642 (643)
                      ++.+|+++...+......+.+.+.++.|+.|..+. ++++-+.|..+|..|+.+.|+
T Consensus       632 vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~eL  688 (717)
T KOG1048|consen  632 VCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKEL  688 (717)
T ss_pred             HHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999999998765 679999999999999887664

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.65  E-value=3.1e-15  Score=169.85  Aligned_cols=262  Identities=19%  Similarity=0.219  Sum_probs=224.9

Q ss_pred             HHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCC------------CHHHHHHHHHHHHhcccCh-hhHHHHH-hc
Q 006494          378 KRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYP------------DSKIQEHTVTALLNLSLDE-TNKRHIA-RE  443 (643)
Q Consensus       378 ~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~------------~~~~~~~a~~~L~nLs~~~-~~k~~i~-~~  443 (643)
                      .+.|+..|..++ -++++|+.+.+.|++..+-.|+.-.            ...++.+|..+|-||...+ .||..+. ..
T Consensus       315 lcaA~~~lMK~S-FDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~r  393 (2195)
T KOG2122|consen  315 LCAALCTLMKLS-FDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQR  393 (2195)
T ss_pred             hHHHHHHHHHhh-ccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhh
Confidence            346777888887 4789999999999999998877531            2357889999999999765 6788887 68


Q ss_pred             CChHHHHHHHccCCHHHHHHHHHHHHHcccccc--ccchhhccCChHHHHHHc-ccCChhhHHHHHHHHHHhhc-CCCch
Q 006494          444 GAIPAIIEILQNGTNEARENSAAALFSLSMLDE--NRVMVGNLNGIPPLVNLL-RYGSIRGKKDAATALFNLSI-NQSNK  519 (643)
Q Consensus       444 g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~--~k~~i~~~g~i~~Lv~lL-~s~~~~~k~~A~~aL~nLs~-~~en~  519 (643)
                      |+++.||..|.+...+..+..+++|.||+..-+  .+..+.+.|.+..|+... +.......+..+.||+||+. +.+||
T Consensus       394 gfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNK  473 (2195)
T KOG2122|consen  394 GFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENK  473 (2195)
T ss_pred             hHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccc
Confidence            999999999999999999999999999996544  566677789999988774 66677788889999999997 77899


Q ss_pred             HHHHh-cCcHHHHHHHhccC----ChhhHHHHHHHHHHHhCC----hhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHH
Q 006494          520 SRAIK-AGIIPSLLKLLEDK----ALGMVDEALSILQLLASH----PEGRNEIGRLSFIETLVEIIKNGTPKNKECATSV  590 (643)
Q Consensus       520 ~~iv~-~G~v~~Lv~lL~~~----~~~~~~~Al~iL~nLa~~----~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~  590 (643)
                      ..|.+ .|++..|+.+|.-.    .-.+.+.|=.||.|++++    ++.|+.+.+.+++..|+..|++.|-.+--+|+.+
T Consensus       474 A~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGT  553 (2195)
T KOG2122|consen  474 AEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGT  553 (2195)
T ss_pred             hhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhh
Confidence            99998 89999999999653    346788999999998875    6678888889999999999999999999999999


Q ss_pred             HHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhhcc
Q 006494          591 LLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSKRE  640 (643)
Q Consensus       591 L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~~~  640 (643)
                      ||||...+++..+.+++.|+++.|..|+++.+.-+-+-++..|++|-.+.
T Consensus       554 LWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R  603 (2195)
T KOG2122|consen  554 LWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR  603 (2195)
T ss_pred             hhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence            99999999999999999999999999999999888888888888876543

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.64  E-value=4.9e-14  Score=140.15  Aligned_cols=277  Identities=17%  Similarity=0.213  Sum_probs=232.2

Q ss_pred             HHHHHHHHhhc--CCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCC-CHHHHHHHHHHHHhcccChhhH
Q 006494          361 EEICSLIQNLS--SSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYP-DSKIQEHTVTALLNLSLDETNK  437 (643)
Q Consensus       361 ~~i~~Lv~~L~--s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~nLs~~~~~k  437 (643)
                      .....++..|.  ..+.++....+..++.-+..++.||..+.+.++.+.+...|... ..++...+..++.-|..+++.|
T Consensus       145 ~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiR  224 (461)
T KOG4199|consen  145 EAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIR  224 (461)
T ss_pred             ccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCcee
Confidence            45556666664  45667777788888888888999999999999999999777654 3357777888888887666433


Q ss_pred             ----------HHHHhcCChHHHHHHHccC-CHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCC-h---hhH
Q 006494          438 ----------RHIAREGAIPAIIEILQNG-TNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGS-I---RGK  502 (643)
Q Consensus       438 ----------~~i~~~g~i~~Lv~lL~~~-~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~-~---~~k  502 (643)
                                ..|+..|++..|++.++.+ ++........+|..|+..++.+..|.+.|++..|+.++.+.+ .   ...
T Consensus       225 V~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~  304 (461)
T KOG4199|consen  225 VVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLA  304 (461)
T ss_pred             eecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHH
Confidence                      3566788999999999976 688888899999999999999999999999999999997743 3   244


Q ss_pred             HHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhcc--CChhhHHHHHHHHHHHhCC-hhhHHHHHhcCcHHHHHHHHhcC
Q 006494          503 KDAATALFNLSINQSNKSRAIKAGIIPSLLKLLED--KALGMVDEALSILQLLASH-PEGRNEIGRLSFIETLVEIIKNG  579 (643)
Q Consensus       503 ~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~--~~~~~~~~Al~iL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~  579 (643)
                      +.++..|..|+-+..++..|++.|+.+.++.++..  .++.+.++++.++..|+-. |+....+++.|+-...++-++..
T Consensus       305 k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkah  384 (461)
T KOG4199|consen  305 KTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAH  384 (461)
T ss_pred             HHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhC
Confidence            67788899999999999999999999999999854  6888999999999999986 88888999999999999999874


Q ss_pred             C--hHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494          580 T--PKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK  638 (643)
Q Consensus       580 s--~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~  638 (643)
                      .  ...|.+|+..+.|+..++.+.+..++..| ++.|+......++.....|...||-|.-
T Consensus       385 P~~a~vQrnac~~IRNiv~rs~~~~~~~l~~G-iE~Li~~A~~~h~tce~~akaALRDLGc  444 (461)
T KOG4199|consen  385 PVAAQVQRNACNMIRNIVVRSAENRTILLANG-IEKLIRTAKANHETCEAAAKAALRDLGC  444 (461)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhhhccchHHhcc-HHHHHHHHHhcCccHHHHHHHHHHhcCc
Confidence            3  56789999999999999999888887766 7888888888888888888889988753

>smart00504 Ubox Modified RING finger domain

Probab=99.63  E-value=2.7e-16  Score=123.83  Aligned_cols=63  Identities=59%  Similarity=1.061  Sum_probs=60.4

Q ss_pred             cccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCchhhhHHHHHHH
Q 006494          272 EFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLIVQW  335 (643)
Q Consensus       272 ~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w  335 (643)
                      +|.||||+++|+|||+++|||+|||.||.+|+.. +.+||.|++++...+++||..+|+.|++|
T Consensus         1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~~~l~~~i~~~   63 (63)
T smart00504        1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSAIQEW   63 (63)
T ss_pred             CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence            5889999999999999999999999999999987 67999999999999999999999999988

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.57  E-value=7.2e-13  Score=131.93  Aligned_cols=263  Identities=17%  Similarity=0.255  Sum_probs=217.9

Q ss_pred             cCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcC--CCHHHHHHHHHHHHhcc-cChhhHHHHHhcCChH
Q 006494          371 SSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSY--PDSKIQEHTVTALLNLS-LDETNKRHIAREGAIP  447 (643)
Q Consensus       371 ~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~--~~~~~~~~a~~~L~nLs-~~~~~k~~i~~~g~i~  447 (643)
                      .+++.....+++..|..+...-|.    +.++.+...++.+|..  .+.++....+..+..-+ .++.||..+++.++++
T Consensus       117 ~~~~~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~  192 (461)
T KOG4199|consen  117 ESPNESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILE  192 (461)
T ss_pred             hCCchhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHH
Confidence            456777888999999988855444    4566678888998864  35566555555555544 5789999999999999


Q ss_pred             HHHHHHcc-CCHHHHHHHHHHHHHccccccccchhh----------ccCChHHHHHHcccC-ChhhHHHHHHHHHHhhcC
Q 006494          448 AIIEILQN-GTNEARENSAAALFSLSMLDENRVMVG----------NLNGIPPLVNLLRYG-SIRGKKDAATALFNLSIN  515 (643)
Q Consensus       448 ~Lv~lL~~-~~~~~~~~Aa~~L~~Ls~~~~~k~~i~----------~~g~i~~Lv~lL~s~-~~~~k~~A~~aL~nLs~~  515 (643)
                      .+...|.. |..++.....+++..|..+|+.|..++          ..|++..|+..++.+ ++.....++.+|..|+..
T Consensus       193 Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr  272 (461)
T KOG4199|consen  193 LILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR  272 (461)
T ss_pred             HHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence            99977754 445666678889999988888776554          346788999999887 688888999999999999


Q ss_pred             CCchHHHHhcCcHHHHHHHhccC----ChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhc--CChHHHHHHHH
Q 006494          516 QSNKSRAIKAGIIPSLLKLLEDK----ALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKN--GTPKNKECATS  589 (643)
Q Consensus       516 ~en~~~iv~~G~v~~Lv~lL~~~----~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~--~s~~~ke~A~~  589 (643)
                      .+.+..+.++|++..|++++.+.    +..+...++..|..|+.+++.+.+|++.|+.+.++.++..  .+|.+.+.++.
T Consensus       273 ~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a  352 (461)
T KOG4199|consen  273 DEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMA  352 (461)
T ss_pred             HHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHH
Confidence            99999999999999999999873    3346678999999999999999999999999999998754  67899999999


Q ss_pred             HHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCC--HHHHHHHHHHHHHhh
Q 006494          590 VLLELGLNNSYFILAALQYGVYEHLVEITRCGT--NRGQRKANSLLQHMS  637 (643)
Q Consensus       590 ~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~--~~~k~~A~~lL~~l~  637 (643)
                      ++..||-..|++...+.+.|+-...+..+....  ..++++|..++|++.
T Consensus       353 ~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv  402 (461)
T KOG4199|consen  353 IISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIV  402 (461)
T ss_pred             HHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999888765  456899999999985

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.54  E-value=7.5e-13  Score=132.87  Aligned_cols=193  Identities=25%  Similarity=0.347  Sum_probs=174.4

Q ss_pred             hHHHHHHHHHhhcC-CCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhH
Q 006494          359 LIEEICSLIQNLSS-SQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNK  437 (643)
Q Consensus       359 ~~~~i~~Lv~~L~s-~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k  437 (643)
                      +.+.++.|+..|.+ .++.++..++..+.+.+ ..+.++..+.+.|+++.+..+|.++++.+++.|+.+|.|++.+.+|+
T Consensus        10 ~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~a-af~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~   88 (254)
T PF04826_consen   10 EAQELQKLLCLLESTEDPFIQEKALIALGNSA-AFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ   88 (254)
T ss_pred             CHHHHHHHHHHHhcCCChHHHHHHHHHHHhhc-cChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence            45789999999984 58999999999999987 67899999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCChHHHHHHHccC--CHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcC
Q 006494          438 RHIAREGAIPAIIEILQNG--TNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSIN  515 (643)
Q Consensus       438 ~~i~~~g~i~~Lv~lL~~~--~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~  515 (643)
                      ..|-.  +++.+++.+.+.  +.+.+..+..+|.+|+..++++..+..  .++.++.+|.+|+..+|..++.+|.||+.+
T Consensus        89 ~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~~G~~~~k~~vLk~L~nLS~n  164 (254)
T PF04826_consen   89 EQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLSSGSEKTKVQVLKVLVNLSEN  164 (254)
T ss_pred             HHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHHcCChHHHHHHHHHHHHhccC
Confidence            98854  688888876654  567888999999999999888877754  799999999999999999999999999999


Q ss_pred             CCchHHHHhcCcHHHHHHHhcc-CChhhHHHHHHHHHHHhCC
Q 006494          516 QSNKSRAIKAGIIPSLLKLLED-KALGMVDEALSILQLLASH  556 (643)
Q Consensus       516 ~en~~~iv~~G~v~~Lv~lL~~-~~~~~~~~Al~iL~nLa~~  556 (643)
                      +.+...++.++++..++.++.. .+.++...++.+..|+..+
T Consensus       165 p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~  206 (254)
T PF04826_consen  165 PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN  206 (254)
T ss_pred             HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence            9999999999999999999976 4678899999999999886

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.48  E-value=2e-12  Score=129.84  Aligned_cols=194  Identities=22%  Similarity=0.239  Sum_probs=170.9

Q ss_pred             HhhCChHHHHHHhcC-CCHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHcccccccc
Q 006494          400 ANNGGIRPLVQLLSY-PDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENR  478 (643)
Q Consensus       400 ~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k  478 (643)
                      .+.+.++.|+.+|+. .|+.+|+.+..++.|.+..+.++..|.+.|+++.+..+|.++++.++..|..+|.||+...+++
T Consensus         9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~   88 (254)
T PF04826_consen    9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ   88 (254)
T ss_pred             cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence            456678899999985 5899999999999999999999999999999999999999999999999999999999999998


Q ss_pred             chhhccCChHHHHHHcccC--ChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC
Q 006494          479 VMVGNLNGIPPLVNLLRYG--SIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH  556 (643)
Q Consensus       479 ~~i~~~g~i~~Lv~lL~s~--~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~  556 (643)
                      ..|-.  .++.+...+.+.  +..++..++.+|.||+...+.+..+.  +.++.++.+|..++..++..++++|.||+.+
T Consensus        89 ~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~n  164 (254)
T PF04826_consen   89 EQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLSEN  164 (254)
T ss_pred             HHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhccC
Confidence            88754  577777765554  67888999999999998877766664  4799999999999999999999999999999


Q ss_pred             hhhHHHHHhcCcHHHHHHHHhcC-ChHHHHHHHHHHHHhccC
Q 006494          557 PEGRNEIGRLSFIETLVEIIKNG-TPKNKECATSVLLELGLN  597 (643)
Q Consensus       557 ~~~~~~i~~~g~i~~Lv~lL~~~-s~~~ke~A~~~L~~L~~~  597 (643)
                      +.....+..+++++.++.++... +.+.-..++.+..+|..+
T Consensus       165 p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~  206 (254)
T PF04826_consen  165 PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN  206 (254)
T ss_pred             HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence            99999999999999999999874 566778888888888654

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.40  E-value=1.1e-10  Score=129.75  Aligned_cols=277  Identities=17%  Similarity=0.177  Sum_probs=222.9

Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHH
Q 006494          360 IEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRH  439 (643)
Q Consensus       360 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~  439 (643)
                      ....+.|...|.++++.++.-+++.|+.+..++......+.+.+.++.++.++.++|..+...|+.+|.+++.++.+-..
T Consensus        76 ~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~  155 (503)
T PF10508_consen   76 PQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQ  155 (503)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHH
Confidence            45678888999999999999999999999977766666677899999999999999999999999999999998888888


Q ss_pred             HHhcCChHHHHHHHccCCHHHHHHHHHHHHHcccc-ccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCc
Q 006494          440 IAREGAIPAIIEILQNGTNEARENSAAALFSLSML-DENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSN  518 (643)
Q Consensus       440 i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en  518 (643)
                      +++.+.+..|..++...+..+|..+..++.+++.. ++....+...|.++.++..+++++.-++.+|+.+|..|+..+.+
T Consensus       156 l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g  235 (503)
T PF10508_consen  156 LFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHG  235 (503)
T ss_pred             HhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhH
Confidence            88888899999999887778888888899999754 45666777789999999999998989999999999999999999


Q ss_pred             hHHHHhcCcHHHHHHHhccC--Ch---h-hHHHHHHHHHHHhCC-hhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHH
Q 006494          519 KSRAIKAGIIPSLLKLLEDK--AL---G-MVDEALSILQLLASH-PEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVL  591 (643)
Q Consensus       519 ~~~iv~~G~v~~Lv~lL~~~--~~---~-~~~~Al~iL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L  591 (643)
                      ...+.+.|+++.|..++.+.  ++   . ..-..+...++++.. +..... .-...+..+.+++.+.++..+..|..++
T Consensus       236 ~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~-~~p~~~~~l~~~~~s~d~~~~~~A~dtl  314 (503)
T PF10508_consen  236 LQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLE-LYPAFLERLFSMLESQDPTIREVAFDTL  314 (503)
T ss_pred             HHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHH-HHHHHHHHHHHHhCCCChhHHHHHHHHH
Confidence            99999999999999999762  22   1 233445777778774 221111 1124566667777888999999999999


Q ss_pred             HHhccCCHHHHHH-HHHcCc----HHHHHHHHhhCCHHHHHHHHHHHHHhh
Q 006494          592 LELGLNNSYFILA-ALQYGV----YEHLVEITRCGTNRGQRKANSLLQHMS  637 (643)
Q Consensus       592 ~~L~~~~~~~~~~-~~~~g~----i~~L~~ll~~g~~~~k~~A~~lL~~l~  637 (643)
                      ..+|+...+.... ....+.    +........+|+...|-++...|..+-
T Consensus       315 g~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il  365 (503)
T PF10508_consen  315 GQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASIL  365 (503)
T ss_pred             HHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence            9999877665554 223334    444444556778888999988888874

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.28  E-value=4.4e-11  Score=136.87  Aligned_cols=225  Identities=20%  Similarity=0.220  Sum_probs=191.5

Q ss_pred             HHHHHHHHHHHHhhhhChhhHHHHH-hhCChHHHHHHhcCCCHHHHHHHHHHHHhcccC--hhhHHHHHhcCChHHHHHH
Q 006494          376 NIKRDSVMKIRMLSKENPDNRILIA-NNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLD--ETNKRHIAREGAIPAIIEI  452 (643)
Q Consensus       376 ~~~~~Al~~L~~La~~~~~~r~~i~-~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~--~~~k~~i~~~g~i~~Lv~l  452 (643)
                      ..|.-|..+|-||+..+..|+..+. ..|+++.+|..|.+...+++.....+|.||+..  ...|..+-+.|-+..|+..
T Consensus       366 aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~  445 (2195)
T KOG2122|consen  366 ALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAAC  445 (2195)
T ss_pred             HHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHH
Confidence            3566688889999999888888885 479999999999998778888889999999965  3446666688988888875


Q ss_pred             -HccCCHHHHHHHHHHHHHccc-cccccchhhc-cCChHHHHHHcccC----ChhhHHHHHHHHHHhhc----CCCchHH
Q 006494          453 -LQNGTNEARENSAAALFSLSM-LDENRVMVGN-LNGIPPLVNLLRYG----SIRGKKDAATALFNLSI----NQSNKSR  521 (643)
Q Consensus       453 -L~~~~~~~~~~Aa~~L~~Ls~-~~~~k~~i~~-~g~i~~Lv~lL~s~----~~~~k~~A~~aL~nLs~----~~en~~~  521 (643)
                       |++...........+||||+. ..+||..|.+ .|++..|+.+|.-.    ...+.+.|-.+|.|+++    +.+.|..
T Consensus       446 al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQI  525 (2195)
T KOG2122|consen  446 ALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQI  525 (2195)
T ss_pred             HHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHH
Confidence             556666677888999999984 5679999998 89999999999543    45677888899999875    4556778


Q ss_pred             HHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC-hhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHH
Q 006494          522 AIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH-PEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSY  600 (643)
Q Consensus       522 iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~  600 (643)
                      +.+..++..|++.|++..-.++..++.+||||+.. ++.++.+.+.|+|+.|..++++.+...-+-++.+|.||..+.+.
T Consensus       526 LR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RPA  605 (2195)
T KOG2122|consen  526 LRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRPA  605 (2195)
T ss_pred             HHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCch
Confidence            88899999999999998888999999999999885 88999999999999999999999999999999999999887654

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.26  E-value=1.7e-10  Score=127.57  Aligned_cols=235  Identities=23%  Similarity=0.317  Sum_probs=179.1

Q ss_pred             ChHHHHHHhcCCCHHHHHHHHHHHHhccc-ChhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccc---cccccc
Q 006494          404 GIRPLVQLLSYPDSKIQEHTVTALLNLSL-DETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSM---LDENRV  479 (643)
Q Consensus       404 ~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~---~~~~k~  479 (643)
                      -++..+.+|.+.++.+|-+|..-|-.++. +++.|..+..-|+|+.||.+|.....+++.+|+++|.||++   +++|+.
T Consensus       234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKl  313 (717)
T KOG1048|consen  234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKL  313 (717)
T ss_pred             ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccch
Confidence            35677888999999999999999999985 45778888899999999999999999999999999999985   345899


Q ss_pred             hhhccCChHHHHHHccc-CChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccC--------------ChhhHH
Q 006494          480 MVGNLNGIPPLVNLLRY-GSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDK--------------ALGMVD  544 (643)
Q Consensus       480 ~i~~~g~i~~Lv~lL~s-~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~--------------~~~~~~  544 (643)
                      .|.+.++|+.++.+|+. ++.++++....+|+||++++.-+..++.. ++..|..-+-.+              ...+..
T Consensus       314 ai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~  392 (717)
T KOG1048|consen  314 AIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFR  392 (717)
T ss_pred             hhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCCCcccccccceeee
Confidence            99999999999999986 78999999999999999996666666553 455554433110              123445


Q ss_pred             HHHHHHHHHhC-ChhhHHHHHhc-CcHHHHHHHHh---------------------------------------------
Q 006494          545 EALSILQLLAS-HPEGRNEIGRL-SFIETLVEIIK---------------------------------------------  577 (643)
Q Consensus       545 ~Al~iL~nLa~-~~~~~~~i~~~-g~i~~Lv~lL~---------------------------------------------  577 (643)
                      .+..+|.|+++ ..++|+.+.+. |.|..|+..++                                             
T Consensus       393 n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~  472 (717)
T KOG1048|consen  393 NVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARL  472 (717)
T ss_pred             hhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhccccc
Confidence            56666666666 35556555553 45555555543                                             


Q ss_pred             ---------------------------------------------------------cCChHHHHHHHHHHHHhccCCH-
Q 006494          578 ---------------------------------------------------------NGTPKNKECATSVLLELGLNNS-  599 (643)
Q Consensus       578 ---------------------------------------------------------~~s~~~ke~A~~~L~~L~~~~~-  599 (643)
                                                                               +..+.+.|.++.+|-+|+.+.. 
T Consensus       473 ~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~  552 (717)
T KOG1048|consen  473 PGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWT  552 (717)
T ss_pred             ccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCc
Confidence                                                                     2334556777788888877643 


Q ss_pred             ---HHHHHH-HHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhhc
Q 006494          600 ---YFILAA-LQYGVYEHLVEITRCGTNRGQRKANSLLQHMSKR  639 (643)
Q Consensus       600 ---~~~~~~-~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~~  639 (643)
                         ..+..+ .++.+.+.|+++++++++++.+.+..+|++|+..
T Consensus       553 ~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d  596 (717)
T KOG1048|consen  553 WSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRD  596 (717)
T ss_pred             chhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccC
Confidence               223333 5678899999999999999999999999999753

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.21  E-value=8.2e-10  Score=113.60  Aligned_cols=263  Identities=16%  Similarity=0.137  Sum_probs=191.3

Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCC------------------------
Q 006494          360 IEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYP------------------------  415 (643)
Q Consensus       360 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~------------------------  415 (643)
                      .+.+..|.+..+|++.++-.+..+.|.+.+..+.++|..+-+.|+-..++++|+..                        
T Consensus        86 a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l  165 (604)
T KOG4500|consen   86 AEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL  165 (604)
T ss_pred             HHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhC
Confidence            45677777777777777777788888888877888888877777766566655430                        


Q ss_pred             -----------------------------------------------------------------------CHHHHHHHH
Q 006494          416 -----------------------------------------------------------------------DSKIQEHTV  424 (643)
Q Consensus       416 -----------------------------------------------------------------------~~~~~~~a~  424 (643)
                                                                                             +++..+...
T Consensus       166 ~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~f  245 (604)
T KOG4500|consen  166 DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIF  245 (604)
T ss_pred             CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHH
Confidence                                                                                   111222233


Q ss_pred             HHHHhcccChhhHHHHHhcCChHHHHHHHcc-CC----HH---HHHHHHHHHHHccccccccchhhccC-ChHHHHHHcc
Q 006494          425 TALLNLSLDETNKRHIAREGAIPAIIEILQN-GT----NE---ARENSAAALFSLSMLDENRVMVGNLN-GIPPLVNLLR  495 (643)
Q Consensus       425 ~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~-~~----~~---~~~~Aa~~L~~Ls~~~~~k~~i~~~g-~i~~Lv~lL~  495 (643)
                      ++|...+.++..|-.+++.|.+..+++++++ .+    .+   .-..++-...-|...++.-..+...+ .++.+++.++
T Consensus       246 eila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~  325 (604)
T KOG4500|consen  246 EILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFR  325 (604)
T ss_pred             HHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhc
Confidence            3333444455555566677777777777765 11    11   11223333333445555555565544 8899999999


Q ss_pred             cCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhcc-----CChhhHHHHHHHHHHHhCChhhHHHHHhcCcHH
Q 006494          496 YGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLED-----KALGMVDEALSILQLLASHPEGRNEIGRLSFIE  570 (643)
Q Consensus       496 s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~-----~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~  570 (643)
                      +.+......+..+|.|++....++..+++.|.+..|+++|..     ++-..+..++.+|.||.-...++.++..+|++.
T Consensus       326 S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGvte  405 (604)
T KOG4500|consen  326 SDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGVTE  405 (604)
T ss_pred             CCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccccchHH
Confidence            999999999999999999999999999999999999999954     455678889999999999999999999999999


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHhccCCHH-HHHHHHHcCcHHHHHHHHhhCC
Q 006494          571 TLVEIIKNGTPKNKECATSVLLELGLNNSY-FILAALQYGVYEHLVEITRCGT  622 (643)
Q Consensus       571 ~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~-~~~~~~~~g~i~~L~~ll~~g~  622 (643)
                      .++.+++..+|..+-.-+.+|..+-.+.+. .++.......+..|+.-..+.+
T Consensus       406 aIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D  458 (604)
T KOG4500|consen  406 AILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPD  458 (604)
T ss_pred             HHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCc
Confidence            999999999999998889998887766552 3344444566777777776554

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.20  E-value=4e-09  Score=109.73  Aligned_cols=277  Identities=17%  Similarity=0.224  Sum_probs=203.2

Q ss_pred             hHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHH
Q 006494          359 LIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKR  438 (643)
Q Consensus       359 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~  438 (643)
                      .++.+..||+.|..++.+...-...-|..|+ -..+|+..+.+.|.|+.|++++...+++.+...+..|.|||.+..++.
T Consensus       302 rkniV~mLVKaLdr~n~~Ll~lv~~FLkKLS-If~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~  380 (791)
T KOG1222|consen  302 RKNIVAMLVKALDRSNSSLLTLVIKFLKKLS-IFDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRP  380 (791)
T ss_pred             HHhHHHHHHHHHcccchHHHHHHHHHHHHhh-hhccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccH
Confidence            4678888999998888787777888888888 467899999999999999999999999999999999999999999999


Q ss_pred             HHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccC---------------------
Q 006494          439 HIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYG---------------------  497 (643)
Q Consensus       439 ~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~---------------------  497 (643)
                      .|+..|.+|.++.+|.+.+.  ...|...++.+|.+++.|..+....+|+.+.+.+-++                     
T Consensus       381 KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkR  458 (791)
T KOG1222|consen  381 KMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKR  458 (791)
T ss_pred             HHhhccchHHHHHHhCCccc--chhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccc
Confidence            99999999999999976542  2235666677777766666665555555555443222                     


Q ss_pred             -----------------------------------------------------------ChhhHHHHHHHHHHhhcCCCc
Q 006494          498 -----------------------------------------------------------SIRGKKDAATALFNLSINQSN  518 (643)
Q Consensus       498 -----------------------------------------------------------~~~~k~~A~~aL~nLs~~~en  518 (643)
                                                                                 +......++.+|.||....-.
T Consensus       459 NaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dld  538 (791)
T KOG1222|consen  459 NAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLD  538 (791)
T ss_pred             cceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCC
Confidence                                                                       111222344444444443333


Q ss_pred             hHHHHh-cCcHHHHHHHhcc--CChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcC--ChHHHHHHHHHHHH
Q 006494          519 KSRAIK-AGIIPSLLKLLED--KALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNG--TPKNKECATSVLLE  593 (643)
Q Consensus       519 ~~~iv~-~G~v~~Lv~lL~~--~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~--s~~~ke~A~~~L~~  593 (643)
                      ...+++ ...||-+-..|..  ...+++-..+-.+..++....+...+..++.|+.++++|+..  +++.--.-..+...
T Consensus       539 w~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q  618 (791)
T KOG1222|consen  539 WAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQ  618 (791)
T ss_pred             HHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHH
Confidence            344433 4556666666654  234566667777788888888888888889999999999873  33334445556667


Q ss_pred             hccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494          594 LGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK  638 (643)
Q Consensus       594 L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~  638 (643)
                      +..+...+...+.+...-..|..++++.+..+|+.+-..|-.+..
T Consensus       619 ~l~He~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae  663 (791)
T KOG1222|consen  619 FLKHELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAE  663 (791)
T ss_pred             HHHHHHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            777766666667777777889999999999999888888877654

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.19  E-value=2.9e-10  Score=100.88  Aligned_cols=117  Identities=29%  Similarity=0.367  Sum_probs=107.3

Q ss_pred             hhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcC-CCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCCh-
Q 006494          480 MVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSIN-QSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHP-  557 (643)
Q Consensus       480 ~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~-~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~-  557 (643)
                      .+.+.|+++.|+.++.+++...+..|+.+|.+++.. ++.+..+++.|+++.++++|.++++.++..|+++|.+|+.+. 
T Consensus         2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~   81 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE   81 (120)
T ss_pred             hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence            356789999999999999999999999999999986 778889999999999999999989999999999999999985 


Q ss_pred             hhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhcc
Q 006494          558 EGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGL  596 (643)
Q Consensus       558 ~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~  596 (643)
                      ..+..+...|+++.+++++.+.+...++.|+.+|.+||.
T Consensus        82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence            566777788999999999999999999999999999974

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.19  E-value=6.5e-10  Score=98.65  Aligned_cols=117  Identities=21%  Similarity=0.237  Sum_probs=110.2

Q ss_pred             HHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC-hhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCH
Q 006494          521 RAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH-PEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNS  599 (643)
Q Consensus       521 ~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~  599 (643)
                      .+++.|+++.|+++|.+.+..++..++.+|.+++.. ++.+..+.+.|+++.++++|.+.++..+..|+.+|.+++...+
T Consensus         2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~   81 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE   81 (120)
T ss_pred             hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence            467899999999999998889999999999999998 8889999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhh
Q 006494          600 YFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMS  637 (643)
Q Consensus       600 ~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~  637 (643)
                      .....+.+.|+++.|..++.+++.++++.|..+|.+|.
T Consensus        82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence            88888888999999999999999999999999999886

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.19  E-value=2.5e-09  Score=119.11  Aligned_cols=270  Identities=16%  Similarity=0.149  Sum_probs=210.7

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHH-hc
Q 006494          365 SLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIA-RE  443 (643)
Q Consensus       365 ~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~-~~  443 (643)
                      .++..|.+.+.+....++..|..+.... .....  ..+..+.|...|.++++.++..++..|.++..++.....++ +.
T Consensus        42 ~lf~~L~~~~~e~v~~~~~iL~~~l~~~-~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~  118 (503)
T PF10508_consen   42 VLFDCLNTSNREQVELICDILKRLLSAL-SPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDN  118 (503)
T ss_pred             HHHHHHhhcChHHHHHHHHHHHHHHhcc-CHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCc
Confidence            3778888777777777777787776422 22222  45677889999999999999999999999887776655544 88


Q ss_pred             CChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcC-CCchHHH
Q 006494          444 GAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSIN-QSNKSRA  522 (643)
Q Consensus       444 g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~-~en~~~i  522 (643)
                      +.++.++..|.+++.++...|+.+|..|+........+...+.+..|..++...+..++..+..++.+++.. ++.....
T Consensus       119 ~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~  198 (503)
T PF10508_consen  119 ELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAV  198 (503)
T ss_pred             cHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            999999999999999999999999999998887777788888899999999887878888899999999875 4556666


Q ss_pred             HhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHH------HHHHHHHhcc
Q 006494          523 IKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKEC------ATSVLLELGL  596 (643)
Q Consensus       523 v~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~------A~~~L~~L~~  596 (643)
                      ...|.++.++..|.+++.-++..|+.+|..|+..+.+...+.+.|+++.|+.++.+.+.+-+-.      .+....+++.
T Consensus       199 ~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~  278 (503)
T PF10508_consen  199 VNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLAR  278 (503)
T ss_pred             HhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHh
Confidence            7799999999999987777889999999999999999999999999999999997643221111      1233444555


Q ss_pred             CCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494          597 NNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK  638 (643)
Q Consensus       597 ~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~  638 (643)
                      ..+..... .-...+..|...+.++++..+..|...+-.++.
T Consensus       279 ~~~~~v~~-~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igs  319 (503)
T PF10508_consen  279 VSPQEVLE-LYPAFLERLFSMLESQDPTIREVAFDTLGQIGS  319 (503)
T ss_pred             cChHHHHH-HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhC
Confidence            43332221 113456677777788888888888888887764

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.14  E-value=9.5e-10  Score=105.51  Aligned_cols=79  Identities=32%  Similarity=0.472  Sum_probs=73.1

Q ss_pred             hhcCCCCCCcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCchhhhHHHHHHHHhhccc
Q 006494          263 RCQTMLVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLIVQWCEKNNV  341 (643)
Q Consensus       263 ~~~~~~~p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~~~~~  341 (643)
                      +....++|+..+|.|+.++|++||++|+|.||+|.-|.+++..-....|+|+.+|....++||..++..|..|...|..
T Consensus       202 ~rk~rEvpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~alkevIa~fl~~n~w  280 (284)
T KOG4642|consen  202 KRKKREVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNLALKEVIAAFLKENEW  280 (284)
T ss_pred             HhccccccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhccchHHHHHHHHHHHhccc
Confidence            4456789999999999999999999999999999999999997667899999999999999999999999999988764

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.12  E-value=2.7e-09  Score=110.98  Aligned_cols=242  Identities=19%  Similarity=0.163  Sum_probs=183.8

Q ss_pred             HHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHHHHccC
Q 006494          377 IKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNG  456 (643)
Q Consensus       377 ~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~  456 (643)
                      ....|+.-|-+++ ++......+.....+..||+.|...+.+.....+..|..||+-.+||..|...|.++.|++++...
T Consensus       279 LLrva~ylLlNlA-ed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~  357 (791)
T KOG1222|consen  279 LLRVAVYLLLNLA-EDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQ  357 (791)
T ss_pred             HHHHHHHHHHHHh-hhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCC
Confidence            3455777888888 455555556677888999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhc
Q 006494          457 TNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLE  536 (643)
Q Consensus       457 ~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~  536 (643)
                      +++.+......++|||++..++..++..|.+|.|+.+|.+++.  ...|+..|+.++.+...+..+....+|+.+.+.+.
T Consensus       358 h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~  435 (791)
T KOG1222|consen  358 HPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVL  435 (791)
T ss_pred             CHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999987653  34688899999999999999999999999998886


Q ss_pred             cCChhhHHHHHHHH-HHHhCChhhHHHHHhcCcHH-------------------------------------HHHHHHhc
Q 006494          537 DKALGMVDEALSIL-QLLASHPEGRNEIGRLSFIE-------------------------------------TLVEIIKN  578 (643)
Q Consensus       537 ~~~~~~~~~Al~iL-~nLa~~~~~~~~i~~~g~i~-------------------------------------~Lv~lL~~  578 (643)
                      ++...-++.++-++ .|||.+..+.+.+.+..++.                                     .|...+.+
T Consensus       436 ~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~n  515 (791)
T KOG1222|consen  436 SGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKN  515 (791)
T ss_pred             hcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhc
Confidence            64333333333333 46666544433333322222                                     22222322


Q ss_pred             C-ChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhC
Q 006494          579 G-TPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCG  621 (643)
Q Consensus       579 ~-s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g  621 (643)
                      . ++.---.++++|.+|.-.+-.....+.....+|.+...++.|
T Consensus       516 d~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pg  559 (791)
T KOG1222|consen  516 DNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPG  559 (791)
T ss_pred             CchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCC
Confidence            1 222233456677777776666777777788888888877665

>PRK09687 putative lyase; Provisional

Probab=99.02  E-value=2.2e-08  Score=102.76  Aligned_cols=223  Identities=19%  Similarity=0.104  Sum_probs=153.5

Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHH-hcCCCHHHHHHHHHHHHhcccChhhHHH
Q 006494          361 EEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQL-LSYPDSKIQEHTVTALLNLSLDETNKRH  439 (643)
Q Consensus       361 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~l-L~~~~~~~~~~a~~~L~nLs~~~~~k~~  439 (643)
                      ..++.+...+.+.++.+|..|+..|..+.... ..     ...+++.|..+ ++++++.++..|+.+|.++.......  
T Consensus        54 ~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~-~~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~--  125 (280)
T PRK09687         54 DVFRLAIELCSSKNPIERDIGADILSQLGMAK-RC-----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY--  125 (280)
T ss_pred             hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc-cc-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc--
Confidence            35566666667777777777777777765211 11     11244566655 56677788888888887764322111  


Q ss_pred             HHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCch
Q 006494          440 IAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNK  519 (643)
Q Consensus       440 i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~  519 (643)
                        ...+++.+...+.+.++.+|..++.+|..+          +...+++.|+.+|.+.+..++..|+.+|.++....   
T Consensus       126 --~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~----------~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~---  190 (280)
T PRK09687        126 --SPKIVEQSQITAFDKSTNVRFAVAFALSVI----------NDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDN---  190 (280)
T ss_pred             --chHHHHHHHHHhhCCCHHHHHHHHHHHhcc----------CCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC---
Confidence              112345566666677788888888877543          33457888888888888888888888888873211   


Q ss_pred             HHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCH
Q 006494          520 SRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNS  599 (643)
Q Consensus       520 ~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~  599 (643)
                           ..+++.|+.+|.+.+..+...|+..|..+-.          ..+++.|++.|.+++  .+..|+.+|..+...  
T Consensus       191 -----~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~----------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~--  251 (280)
T PRK09687        191 -----PDIREAFVAMLQDKNEEIRIEAIIGLALRKD----------KRVLSVLIKELKKGT--VGDLIIEAAGELGDK--  251 (280)
T ss_pred             -----HHHHHHHHHHhcCCChHHHHHHHHHHHccCC----------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH--
Confidence                 2467778888888888888888888876432          357888888888765  455667777666552  


Q ss_pred             HHHHHHHHcCcHHHHHHHHh-hCCHHHHHHHHHHHH
Q 006494          600 YFILAALQYGVYEHLVEITR-CGTNRGQRKANSLLQ  634 (643)
Q Consensus       600 ~~~~~~~~~g~i~~L~~ll~-~g~~~~k~~A~~lL~  634 (643)
                               -++|.|..++. +.+++++.+|.+.|.
T Consensus       252 ---------~a~p~L~~l~~~~~d~~v~~~a~~a~~  278 (280)
T PRK09687        252 ---------TLLPVLDTLLYKFDDNEIITKAIDKLK  278 (280)
T ss_pred             ---------hHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence                     37899999996 789999999988875

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=99.02  E-value=1.7e-10  Score=82.02  Aligned_cols=39  Identities=28%  Similarity=0.773  Sum_probs=31.3

Q ss_pred             CccCcccccCCeecCCcccccHHhHHHHHhcCC---CCCCCC
Q 006494          275 CPVTLEIMTDPVIVATGQTYERESIQRWLNSNH---KTCPKT  313 (643)
Q Consensus       275 Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~---~~cP~~  313 (643)
                      ||||+++|+|||+++|||+||+.||++|++..+   ..||.|
T Consensus         1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            899999999999999999999999999998543   358875

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=99.01  E-value=1.7e-10  Score=108.30  Aligned_cols=62  Identities=23%  Similarity=0.498  Sum_probs=53.4

Q ss_pred             CCCCCcccCccCcccccCCeecCCcccccHHhHHHHHhc---------------CCCCCCCCCcccCCCCCCchhhh
Q 006494          267 MLVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNS---------------NHKTCPKTGQILDHLSLAPNYAL  328 (643)
Q Consensus       267 ~~~p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~---------------~~~~cP~~~~~l~~~~l~pn~~l  328 (643)
                      ....++|.||||++.++|||+++|||.||+.||.+|+..               +...||.|+.++....++|.+.-
T Consensus        13 ~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiygr   89 (193)
T PLN03208         13 VDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYGR   89 (193)
T ss_pred             ccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeecc
Confidence            345678999999999999999999999999999999852               23579999999999999987543

>PRK09687 putative lyase; Provisional

Probab=98.99  E-value=1.7e-08  Score=103.60  Aligned_cols=228  Identities=14%  Similarity=0.033  Sum_probs=172.5

Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHH
Q 006494          360 IEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRH  439 (643)
Q Consensus       360 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~  439 (643)
                      ...+..|+..|.+.+..++..|+..|..+..           ..+++.+..++.++++.++..|+.+|..|...+..   
T Consensus        22 ~~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---   87 (280)
T PRK09687         22 KLNDDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC---   87 (280)
T ss_pred             hccHHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc---
Confidence            4567889999999999999999999987652           23567788899999999999999999987543221   


Q ss_pred             HHhcCChHHHHHH-HccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCc
Q 006494          440 IAREGAIPAIIEI-LQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSN  518 (643)
Q Consensus       440 i~~~g~i~~Lv~l-L~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en  518 (643)
                        ...+++.|..+ +++.++.+|..|+.+|.++......    ....++..+...+.+.+..++..|+.+|..+.     
T Consensus        88 --~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~----~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~-----  156 (280)
T PRK09687         88 --QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPL----YSPKIVEQSQITAFDKSTNVRFAVAFALSVIN-----  156 (280)
T ss_pred             --hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccc----cchHHHHHHHHHhhCCCHHHHHHHHHHHhccC-----
Confidence              12356777776 5677899999999999998532211    12235677778888889999999999996542     


Q ss_pred             hHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCC
Q 006494          519 KSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNN  598 (643)
Q Consensus       519 ~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~  598 (643)
                           ...+++.|+.+|.+++..+...|+..|..+...        ...+++.|+..|.+.++.+|..|+..|..+-.  
T Consensus       157 -----~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~--------~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~--  221 (280)
T PRK09687        157 -----DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYD--------NPDIREAFVAMLQDKNEEIRIEAIIGLALRKD--  221 (280)
T ss_pred             -----CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCC--------CHHHHHHHHHHhcCCChHHHHHHHHHHHccCC--
Confidence                 234889999999998889999999999988332        12567889999999999999999999877433  


Q ss_pred             HHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494          599 SYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK  638 (643)
Q Consensus       599 ~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~  638 (643)
                               ..++|.|...+.++..  +..|...|-.+..
T Consensus       222 ---------~~av~~Li~~L~~~~~--~~~a~~ALg~ig~  250 (280)
T PRK09687        222 ---------KRVLSVLIKELKKGTV--GDLIIEAAGELGD  250 (280)
T ss_pred             ---------hhHHHHHHHHHcCCch--HHHHHHHHHhcCC
Confidence                     2467888888877663  4456666655544

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.96  E-value=6.3e-08  Score=107.13  Aligned_cols=256  Identities=17%  Similarity=0.168  Sum_probs=204.8

Q ss_pred             HHHHHHHHhhcCC-CHHHHHHHHHHHHH-hhhhChhhHHHHHhhCChHHHHHHhcCC-CHHHHHHHHHHHHhcc-cChhh
Q 006494          361 EEICSLIQNLSSS-QLNIKRDSVMKIRM-LSKENPDNRILIANNGGIRPLVQLLSYP-DSKIQEHTVTALLNLS-LDETN  436 (643)
Q Consensus       361 ~~i~~Lv~~L~s~-~~~~~~~Al~~L~~-La~~~~~~r~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~nLs-~~~~~  436 (643)
                      ..+..|++.|... ++..|.+|+.++.. |...+++.-..+--...+|.|+.+|++. +.+++-.|+++|.+|+ ..+..
T Consensus       167 Sk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S  246 (1051)
T KOG0168|consen  167 SKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRS  246 (1051)
T ss_pred             HHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccch
Confidence            4788999999865 88899999999874 4444554444444456899999999975 7999999999999998 45777


Q ss_pred             HHHHHhcCChHHHHHHHccC-CHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhc-
Q 006494          437 KRHIAREGAIPAIIEILQNG-TNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSI-  514 (643)
Q Consensus       437 k~~i~~~g~i~~Lv~lL~~~-~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~-  514 (643)
                      ...+++.++||.++.-|..- -.++.+++..+|-.+|..  .-..|.+.|++...+..|.--+..+++.|+.+..|.|. 
T Consensus       247 ~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~--H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cks  324 (1051)
T KOG0168|consen  247 SAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR--HPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKS  324 (1051)
T ss_pred             hheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh--ccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            88888999999999888764 578889999999999863  34567889999999999988888999999999999996 


Q ss_pred             -CCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC----hhhHHHHHhcCcHHHHHHHHhcC----ChHHHH
Q 006494          515 -NQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH----PEGRNEIGRLSFIETLVEIIKNG----TPKNKE  585 (643)
Q Consensus       515 -~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~----~~~~~~i~~~g~i~~Lv~lL~~~----s~~~ke  585 (643)
                       .++.-..+++  ++|.|..+|...+...++.++-++..++..    ++.-+.+.+.|.|.....+|.-.    +.....
T Consensus       325 i~sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~  402 (1051)
T KOG0168|consen  325 IRSDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYT  402 (1051)
T ss_pred             CCCccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchh
Confidence             3444444444  699999999988889999999999988874    56677788889999999988643    223344


Q ss_pred             HHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhh
Q 006494          586 CATSVLLELGLNNSYFILAALQYGVYEHLVEITRC  620 (643)
Q Consensus       586 ~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~  620 (643)
                      -.+..|..+|++.+-........++...|..++..
T Consensus       403 ~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g  437 (1051)
T KOG0168|consen  403 GVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQG  437 (1051)
T ss_pred             HHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhc
Confidence            56677888888878777778888999999888763

>TIGR00599 rad18 DNA repair protein rad18

Probab=98.92  E-value=9.5e-10  Score=115.79  Aligned_cols=69  Identities=16%  Similarity=0.349  Sum_probs=63.5

Q ss_pred             CCCCcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCchhhhHHHHHHHHh
Q 006494          268 LVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLIVQWCE  337 (643)
Q Consensus       268 ~~p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~  337 (643)
                      .+...|.||||.+++.+||+++|||+||..||..|+.. ...||.|+.++....+.+|..+..+|+.|..
T Consensus        22 ~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~   90 (397)
T TIGR00599        22 PLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQESKLRSNWLVSEIVESFKN   90 (397)
T ss_pred             ccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC-CCCCCCCCCccccccCccchHHHHHHHHHHH
Confidence            46688999999999999999999999999999999986 4589999999988889999999999998864

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=98.92  E-value=1.9e-07  Score=99.94  Aligned_cols=274  Identities=12%  Similarity=0.075  Sum_probs=199.0

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCC-CHHHHHHHHHHHHhcccChhhHHHHH
Q 006494          363 ICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYP-DSKIQEHTVTALLNLSLDETNKRHIA  441 (643)
Q Consensus       363 i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~nLs~~~~~k~~i~  441 (643)
                      ...++..|...+.-++..|+..|..+...+..+.......-....|...|++. +...+.-++.+|.+|...+..|..+.
T Consensus       103 ~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~  182 (429)
T cd00256         103 WEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFV  182 (429)
T ss_pred             hHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHH
Confidence            34455677777888888999888888754443211111111334566666654 47778888999999999999999888


Q ss_pred             hcCChHHHHHHHccC--CHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccC-ChhhHHHHHHHHHHhhcCCC-
Q 006494          442 REGAIPAIIEILQNG--TNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYG-SIRGKKDAATALFNLSINQS-  517 (643)
Q Consensus       442 ~~g~i~~Lv~lL~~~--~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~-~~~~k~~A~~aL~nLs~~~e-  517 (643)
                      +.++++.|+.+|+..  +...+.++.-+++-||+.++....+...+.|+.|+++++.. ...+.+-++.+|.||...+. 
T Consensus       183 ~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~  262 (429)
T cd00256         183 LADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVD  262 (429)
T ss_pred             HccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccc
Confidence            888999999999863  56889999999999999988777777789999999999765 67788899999999987431 


Q ss_pred             ------chHHHHhcCcHHHHHHHhcc--CChhhHHHHH-------HHHHHHhCCh------------------------h
Q 006494          518 ------NKSRAIKAGIIPSLLKLLED--KALGMVDEAL-------SILQLLASHP------------------------E  558 (643)
Q Consensus       518 ------n~~~iv~~G~v~~Lv~lL~~--~~~~~~~~Al-------~iL~nLa~~~------------------------~  558 (643)
                            ....|+..|+++.+-.+-..  .++++.+..-       .....+++.+                        +
T Consensus       263 ~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~E  342 (429)
T cd00256         263 REVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRE  342 (429)
T ss_pred             cchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHH
Confidence                  24566777776655444433  4555544322       2223333222                        1


Q ss_pred             hHHHHHhc--CcHHHHHHHHhc-CChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHH
Q 006494          559 GRNEIGRL--SFIETLVEIIKN-GTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQH  635 (643)
Q Consensus       559 ~~~~i~~~--g~i~~Lv~lL~~-~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~  635 (643)
                      +...+-+.  ..+..|+++|.. .++..-.-|+.=+..++++.|..+..+.+.|+-..+++++.+.++++|..|...++.
T Consensus       343 N~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQk  422 (429)
T cd00256         343 NADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQK  422 (429)
T ss_pred             HHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            34444443  346889999953 456666677777889999888777777789999999999999999999999998886


Q ss_pred             h
Q 006494          636 M  636 (643)
Q Consensus       636 l  636 (643)
                      |
T Consensus       423 l  423 (429)
T cd00256         423 L  423 (429)
T ss_pred             H
Confidence            5

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.88  E-value=4e-08  Score=103.07  Aligned_cols=229  Identities=17%  Similarity=0.164  Sum_probs=163.1

Q ss_pred             ChHHHHHHhcC--CCHHHHHHHHHHHHhcccChh-hHHHHHh------cCChHHHHHHHccCCHHHHHHHHHHHHHcccc
Q 006494          404 GIRPLVQLLSY--PDSKIQEHTVTALLNLSLDET-NKRHIAR------EGAIPAIIEILQNGTNEARENSAAALFSLSML  474 (643)
Q Consensus       404 ~i~~Lv~lL~~--~~~~~~~~a~~~L~nLs~~~~-~k~~i~~------~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~  474 (643)
                      ....++.+|+.  .+.++....+..+..+..++. ....+..      .....++++++.+++..++..|+..|..|...
T Consensus        56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~  135 (312)
T PF03224_consen   56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQ  135 (312)
T ss_dssp             ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHc
Confidence            35555566543  478888999999888765543 3333332      23688899988889999999999999999766


Q ss_pred             ccccchhhccCChHHHHHHcccC----ChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHh-----cc--CChhhH
Q 006494          475 DENRVMVGNLNGIPPLVNLLRYG----SIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLL-----ED--KALGMV  543 (643)
Q Consensus       475 ~~~k~~i~~~g~i~~Lv~lL~s~----~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL-----~~--~~~~~~  543 (643)
                      ...+..-...+.++.+++++.+.    +......|+.+|.+|...++.|..+.+.|+++.|..+|     .+  .+..++
T Consensus       136 ~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~  215 (312)
T PF03224_consen  136 GPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQ  215 (312)
T ss_dssp             TTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHH
T ss_pred             CCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHH
Confidence            55544443356778888887653    34556889999999999999999999999999999999     22  344678


Q ss_pred             HHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcC-ChHHHHHHHHHHHHhccCCHH-HHHHHHHcCcHHHHHHHHhhC
Q 006494          544 DEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNG-TPKNKECATSVLLELGLNNSY-FILAALQYGVYEHLVEITRCG  621 (643)
Q Consensus       544 ~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~-s~~~ke~A~~~L~~L~~~~~~-~~~~~~~~g~i~~L~~ll~~g  621 (643)
                      -+++-+++.|+.+++....+...+.|+.|+++++.. .+.+-.-++++|.|++..+.. ....++..|+++.|..+....
T Consensus       216 Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk  295 (312)
T PF03224_consen  216 YQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERK  295 (312)
T ss_dssp             HHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS-
T ss_pred             HHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCC
Confidence            889999999999999999999999999999999874 467778899999999988765 667777888777777776543


Q ss_pred             --CHHHHHHHHHH
Q 006494          622 --TNRGQRKANSL  632 (643)
Q Consensus       622 --~~~~k~~A~~l  632 (643)
                        ++...+--..+
T Consensus       296 ~~Dedl~edl~~L  308 (312)
T PF03224_consen  296 WSDEDLTEDLEFL  308 (312)
T ss_dssp             -SSHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHH
Confidence              56665544433

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=98.86  E-value=2e-07  Score=96.42  Aligned_cols=266  Identities=15%  Similarity=0.118  Sum_probs=183.8

Q ss_pred             CHHHHHHHHHHHHHhhhhChhhHHHH----HhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccC-hhhHHHHHhcCChHH
Q 006494          374 QLNIKRDSVMKIRMLSKENPDNRILI----ANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLD-ETNKRHIAREGAIPA  448 (643)
Q Consensus       374 ~~~~~~~Al~~L~~La~~~~~~r~~i----~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~k~~i~~~g~i~~  448 (643)
                      +..+...+...+...++ ++..|..+    +.+++++.|....+++|.++-+...++|.|.+.+ +++|..+.+.|+-..
T Consensus        55 ~~tv~~~qssC~A~~sk-~ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqi  133 (604)
T KOG4500|consen   55 SDTVYLFQSSCLADRSK-NEVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQI  133 (604)
T ss_pred             cchhhhhhHHHHHHHhh-hHHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCcee
Confidence            33445555556666663 44444444    4567899999999999999999999999999964 689999999999888


Q ss_pred             HHHHHcc----CC---HHHHHHHHHHHHHcccc-ccccchhhccCChHHHHHHcccC--Ch-------------------
Q 006494          449 IIEILQN----GT---NEARENSAAALFSLSML-DENRVMVGNLNGIPPLVNLLRYG--SI-------------------  499 (643)
Q Consensus       449 Lv~lL~~----~~---~~~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~s~--~~-------------------  499 (643)
                      ++++|+.    .+   .+....+.+.|.|-... ++.+.+..+.|+++.|...+.-+  +.                   
T Consensus       134 vid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e  213 (604)
T KOG4500|consen  134 VIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCE  213 (604)
T ss_pred             hHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHH
Confidence            8888864    11   24445566777776543 44777777777777665554311  00                   


Q ss_pred             -------------------------hhHHHHHHH----------------------HHHh--------------------
Q 006494          500 -------------------------RGKKDAATA----------------------LFNL--------------------  512 (643)
Q Consensus       500 -------------------------~~k~~A~~a----------------------L~nL--------------------  512 (643)
                                               +........                      +.+|                    
T Consensus       214 ~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~  293 (604)
T KOG4500|consen  214 MLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRI  293 (604)
T ss_pred             hhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhh
Confidence                                     000001111                      1111                    


Q ss_pred             -------hcCCCchHHHHhcC-cHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhc-----C
Q 006494          513 -------SINQSNKSRAIKAG-IIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKN-----G  579 (643)
Q Consensus       513 -------s~~~en~~~iv~~G-~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~-----~  579 (643)
                             ....+.-.++-..| .++.++..+.+.+......+.-+++|++..++.+..+++.|.+..|++.|..     |
T Consensus       294 ~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdg  373 (604)
T KOG4500|consen  294 AELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDG  373 (604)
T ss_pred             hhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence                   11122222222222 4444555555566677888888999999999999999999999999998853     4


Q ss_pred             ChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhhccC
Q 006494          580 TPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSKREH  641 (643)
Q Consensus       580 s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~~~e  641 (643)
                      +-+.+..++++|.++.---+ ....+..+|+.+.++..+....|++.-+-...||+++..+|
T Consensus       374 nV~~qhA~lsALRnl~IPv~-nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe  434 (604)
T KOG4500|consen  374 NVERQHACLSALRNLMIPVS-NKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQE  434 (604)
T ss_pred             cchhHHHHHHHHHhccccCC-chhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchH
Confidence            56777888899999987433 45567789999999999999999999999999998887654

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.80  E-value=8.5e-08  Score=100.59  Aligned_cols=220  Identities=23%  Similarity=0.259  Sum_probs=161.1

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHh------hCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHH
Q 006494          365 SLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIAN------NGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKR  438 (643)
Q Consensus       365 ~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~------~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~  438 (643)
                      .+++.+ +.+.++..-.+..+..+...++.....+..      .....++++++.++|..++..|+..|..|......+.
T Consensus        62 ~lL~~~-~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~  140 (312)
T PF03224_consen   62 NLLNKL-SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRS  140 (312)
T ss_dssp             HHHHHH----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--
T ss_pred             HHHHHc-cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccc
Confidence            444444 457788888888888888777766655544      2367889999999999999999999999876544433


Q ss_pred             HHHhcCChHHHHHHHcc----CCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHc-----ccC--ChhhHHHHHH
Q 006494          439 HIAREGAIPAIIEILQN----GTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLL-----RYG--SIRGKKDAAT  507 (643)
Q Consensus       439 ~i~~~g~i~~Lv~lL~~----~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL-----~s~--~~~~k~~A~~  507 (643)
                      .-...+.++.++..|++    .+.+.+..++.+|.+|...+++|..+.+.|+++.|..++     .++  +......++.
T Consensus       141 ~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll  220 (312)
T PF03224_consen  141 EKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALL  220 (312)
T ss_dssp             HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHH
Confidence            33225567888888875    344566889999999999999999999999999999999     222  4678899999


Q ss_pred             HHHHhhcCCCchHHHHhcCcHHHHHHHhcc-CChhhHHHHHHHHHHHhCChh--hHHHHHhcCcHHHHHHHHhc--CChH
Q 006494          508 ALFNLSINQSNKSRAIKAGIIPSLLKLLED-KALGMVDEALSILQLLASHPE--GRNEIGRLSFIETLVEIIKN--GTPK  582 (643)
Q Consensus       508 aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~-~~~~~~~~Al~iL~nLa~~~~--~~~~i~~~g~i~~Lv~lL~~--~s~~  582 (643)
                      +++.|+.+++....+...+.++.|+++++. ..+.++.-++++|.||.....  ....++..|+++.+-.+...  ++++
T Consensus       221 ~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Ded  300 (312)
T PF03224_consen  221 CLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDED  300 (312)
T ss_dssp             HHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHH
T ss_pred             HHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHH
Confidence            999999999999999999999999999987 566789999999999999865  78888876666655554433  3454


Q ss_pred             HHH
Q 006494          583 NKE  585 (643)
Q Consensus       583 ~ke  585 (643)
                      ..+
T Consensus       301 l~e  303 (312)
T PF03224_consen  301 LTE  303 (312)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.72  E-value=5.1e-09  Score=100.06  Aligned_cols=59  Identities=25%  Similarity=0.536  Sum_probs=52.6

Q ss_pred             CCcccCccCcccccCCeecCCcccccHHhHHHHHhc--CCCCCCCCCcccCCCCCCchhhh
Q 006494          270 PHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNS--NHKTCPKTGQILDHLSLAPNYAL  328 (643)
Q Consensus       270 p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~--~~~~cP~~~~~l~~~~l~pn~~l  328 (643)
                      -..|.|-||++.-+|||++.|||-||..||.+|++.  +...||+|+..++...++|-+.-
T Consensus        45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYGr  105 (230)
T KOG0823|consen   45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYGR  105 (230)
T ss_pred             CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeecc
Confidence            367999999999999999999999999999999983  33458999999999999997654

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.70  E-value=1e-08  Score=72.01  Aligned_cols=38  Identities=32%  Similarity=0.875  Sum_probs=33.4

Q ss_pred             CccCcccccCC-eecCCcccccHHhHHHHHhcCCCCCCCC
Q 006494          275 CPVTLEIMTDP-VIVATGQTYERESIQRWLNSNHKTCPKT  313 (643)
Q Consensus       275 Cpi~~~~m~dP-v~~~~g~t~~r~~I~~w~~~~~~~cP~~  313 (643)
                      ||||.+.+.|| ++++|||+||+.||++|++. +..||.|
T Consensus         1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred             CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence            89999999999 57899999999999999998 6899976

>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]

Probab=98.68  E-value=5.1e-08  Score=104.26  Aligned_cols=101  Identities=26%  Similarity=0.392  Sum_probs=80.9

Q ss_pred             cccHHHHHHHHHHHHHhhccccccccCCchhhhhhhhhcCCCCCCcccCccCcccccCCeecC-CcccccHHhHHHHHhc
Q 006494          227 ADSISQITDLLGKFKQIAGVEDTLVLDGSVSARKLQRCQTMLVPHEFLCPVTLEIMTDPVIVA-TGQTYERESIQRWLNS  305 (643)
Q Consensus       227 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~f~Cpi~~~~m~dPv~~~-~g~t~~r~~I~~w~~~  305 (643)
                      +..++.+..+..++.+....+            +.++.+..++|++|..|++..+|+|||++| +|-+.||+.|..++-+
T Consensus       821 ~~~IE~l~~f~nr~E~~r~~e------------a~EeED~GDvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahlls  888 (929)
T COG5113         821 ESQIEELRSFINRLEKVRVIE------------AVEEEDMGDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLS  888 (929)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH------------hhhhhhccCCchhhhCchhhhcccCCeecccccccccHHHHHHHHhc
Confidence            345666667777665543211            112224567999999999999999999987 6999999999999997


Q ss_pred             CCCCCCCCCcccCCCCCCchhhhHHHHHHHHhhcc
Q 006494          306 NHKTCPKTGQILDHLSLAPNYALRNLIVQWCEKNN  340 (643)
Q Consensus       306 ~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~~~~  340 (643)
                       ..+.|+.|.||...+++||..+|.-|..|....+
T Consensus       889 -d~tDPFNRmPLtlddVtpn~eLrekIn~f~k~k~  922 (929)
T COG5113         889 -DGTDPFNRMPLTLDDVTPNAELREKINRFYKCKG  922 (929)
T ss_pred             -CCCCccccCCCchhhcCCCHHHHHHHHHHHhccc
Confidence             5799999999999999999999999999976543

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.65  E-value=3.7e-06  Score=86.30  Aligned_cols=230  Identities=23%  Similarity=0.282  Sum_probs=168.7

Q ss_pred             CCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhccc-ChhhHHHHHhcCChHHHH
Q 006494          372 SSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSL-DETNKRHIAREGAIPAII  450 (643)
Q Consensus       372 s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~k~~i~~~g~i~~Lv  450 (643)
                      +.+.+.+..|+..|..+. ++-+|-.-+...|+..+|+..+.+++..+++.|+.+|...+. ++..+..+.+.|+++.|+
T Consensus        94 s~~le~ke~ald~Le~lv-e~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll  172 (342)
T KOG2160|consen   94 SVDLEDKEDALDNLEELV-EDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL  172 (342)
T ss_pred             cCCHHHHHHHHHHHHHHH-HhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence            567888999999999999 788999999999999999999999999999999999998774 578888999999999999


Q ss_pred             HHHccC-CHHHHHHHHHHHHHcccccc-ccchhhccCChHHHHHHccc--CChhhHHHHHHHHHHhhcCC-CchHHHHhc
Q 006494          451 EILQNG-TNEARENSAAALFSLSMLDE-NRVMVGNLNGIPPLVNLLRY--GSIRGKKDAATALFNLSINQ-SNKSRAIKA  525 (643)
Q Consensus       451 ~lL~~~-~~~~~~~Aa~~L~~Ls~~~~-~k~~i~~~g~i~~Lv~lL~s--~~~~~k~~A~~aL~nLs~~~-en~~~iv~~  525 (643)
                      ..|.+. +..++..|..++.+|-.... ....+...++...|..++++  .+...++.++..+..|.... ..+..+-..
T Consensus       173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~  252 (342)
T KOG2160|consen  173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSL  252 (342)
T ss_pred             HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHh
Confidence            999864 56788889999998876554 56667777889999999988  46788999999999988644 344444456


Q ss_pred             CcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHH-hc----CcHHHHHHHHhc-CChHHHHHHHHHHHHhccCCH
Q 006494          526 GIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIG-RL----SFIETLVEIIKN-GTPKNKECATSVLLELGLNNS  599 (643)
Q Consensus       526 G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~-~~----g~i~~Lv~lL~~-~s~~~ke~A~~~L~~L~~~~~  599 (643)
                      |....+..+.......+.+.++..+..+...-..+..+. ..    ..+......++. .....+..-+.-++..|...+
T Consensus       253 ~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~~~~~~~~~~~~l~e~l~~~~q~~~~~~~~~~e~~l~~~l~~~~~e~~  332 (342)
T KOG2160|consen  253 GFQRVLENLISSLDFEVNEAALTALLSLLSELSTRKELFVSLLNLEELLKSLIQIISDHAALEEERQLVNSLWEICGEVP  332 (342)
T ss_pred             hhhHHHHHHhhccchhhhHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccH
Confidence            666667766666666777888777776666532222221 11    223333333331 122333444455666666555


Q ss_pred             HHH
Q 006494          600 YFI  602 (643)
Q Consensus       600 ~~~  602 (643)
                      ..-
T Consensus       333 ~~~  335 (342)
T KOG2160|consen  333 SIL  335 (342)
T ss_pred             HHH
Confidence            443

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.65  E-value=5.8e-06  Score=98.75  Aligned_cols=85  Identities=15%  Similarity=0.062  Sum_probs=53.0

Q ss_pred             HHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcC
Q 006494          530 SLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYG  609 (643)
Q Consensus       530 ~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g  609 (643)
                      .|+..|.+.+..+...|+.+|..+.          ....++.|+.+|.+.+..+|..|+.+|..+- .++         .
T Consensus       811 ~l~~aL~d~d~~VR~~Aa~aL~~l~----------~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~-~~~---------~  870 (897)
T PRK13800        811 AATAALRASAWQVRQGAARALAGAA----------ADVAVPALVEALTDPHLDVRKAAVLALTRWP-GDP---------A  870 (897)
T ss_pred             HHHHHhcCCChHHHHHHHHHHHhcc----------ccchHHHHHHHhcCCCHHHHHHHHHHHhccC-CCH---------H
Confidence            3444454444445555555554332          1245677777777777778877777776651 111         2


Q ss_pred             cHHHHHHHHhhCCHHHHHHHHHHHH
Q 006494          610 VYEHLVEITRCGTNRGQRKANSLLQ  634 (643)
Q Consensus       610 ~i~~L~~ll~~g~~~~k~~A~~lL~  634 (643)
                      +.+.|...+.+.++.+++.|...|.
T Consensus       871 a~~~L~~al~D~d~~Vr~~A~~aL~  895 (897)
T PRK13800        871 ARDALTTALTDSDADVRAYARRALA  895 (897)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHh
Confidence            4667777788888888888887775

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.65  E-value=2.9e-06  Score=101.28  Aligned_cols=230  Identities=15%  Similarity=0.076  Sum_probs=141.2

Q ss_pred             hHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHH
Q 006494          359 LIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKR  438 (643)
Q Consensus       359 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~  438 (643)
                      ....++.|+..|.+.++.+|..|+..|..+..           .++++.|+..|+++++.++..|+.+|..+....    
T Consensus       619 ~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~----  683 (897)
T PRK13800        619 DAPSVAELAPYLADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVL----  683 (897)
T ss_pred             cchhHHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc----
Confidence            34577889999999999999999998886641           346778888888888888888888886653110    


Q ss_pred             HHHhcCChHHHHHHHccCCHHHHHHHHHHHHHcccccc-------------ccc----hhhccCChHHHHHHcccCChhh
Q 006494          439 HIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDE-------------NRV----MVGNLNGIPPLVNLLRYGSIRG  501 (643)
Q Consensus       439 ~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~-------------~k~----~i~~~g~i~~Lv~lL~s~~~~~  501 (643)
                           ...+.+...|.+.++.+|..|+.+|..+...+.             .|.    .++..+..+.|..++.+.+..+
T Consensus       684 -----~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~V  758 (897)
T PRK13800        684 -----PPAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREV  758 (897)
T ss_pred             -----CchHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHH
Confidence                 112344444555555555555544444321000             000    0000012233444555555555


Q ss_pred             HHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCCh
Q 006494          502 KKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTP  581 (643)
Q Consensus       502 k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~  581 (643)
                      +..++.+|..+...        ..+.++.|..++.++++.+...|+..|..+...         ...++.+...|.+.++
T Consensus       759 R~~aa~aL~~~~~~--------~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~---------~~~~~~l~~aL~d~d~  821 (897)
T PRK13800        759 RIAVAKGLATLGAG--------GAPAGDAVRALTGDPDPLVRAAALAALAELGCP---------PDDVAAATAALRASAW  821 (897)
T ss_pred             HHHHHHHHHHhccc--------cchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc---------chhHHHHHHHhcCCCh
Confidence            55555555544321        112356667777666666777777766665332         1123456667777777


Q ss_pred             HHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 006494          582 KNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHM  636 (643)
Q Consensus       582 ~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l  636 (643)
                      .+|..|+.+|..+..           ...++.|..++.+.+..+|..|...|..+
T Consensus       822 ~VR~~Aa~aL~~l~~-----------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~  865 (897)
T PRK13800        822 QVRQGAARALAGAAA-----------DVAVPALVEALTDPHLDVRKAAVLALTRW  865 (897)
T ss_pred             HHHHHHHHHHHhccc-----------cchHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence            777777777765542           23569999999999999999999999775

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=98.63  E-value=1.1e-08  Score=77.72  Aligned_cols=44  Identities=36%  Similarity=0.799  Sum_probs=31.3

Q ss_pred             CcccCccCcccccCCeec-CCcccccHHhHHHHHh-cCCCCCCCCC
Q 006494          271 HEFLCPVTLEIMTDPVIV-ATGQTYERESIQRWLN-SNHKTCPKTG  314 (643)
Q Consensus       271 ~~f~Cpi~~~~m~dPv~~-~~g~t~~r~~I~~w~~-~~~~~cP~~~  314 (643)
                      -.|.||||+..|.|||.- .|||+|+|.+|.+|+. .+...||..+
T Consensus        10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G   55 (57)
T PF11789_consen   10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG   55 (57)
T ss_dssp             --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred             eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence            468999999999999985 8999999999999994 3345699854

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.59  E-value=1.8e-05  Score=87.65  Aligned_cols=258  Identities=21%  Similarity=0.230  Sum_probs=197.0

Q ss_pred             HHHHHHHHHhhcC-CCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCC--CHHHHHHHHHHHHhcccChh-
Q 006494          360 IEEICSLIQNLSS-SQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYP--DSKIQEHTVTALLNLSLDET-  435 (643)
Q Consensus       360 ~~~i~~Lv~~L~s-~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~nLs~~~~-  435 (643)
                      .++|+.|+..+.+ .-.+.|+.|++.|..+++   .+|..+. +.+.++|+..|..+  |+++...++.+++++..+++ 
T Consensus        21 aETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vg-a~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~   96 (970)
T KOG0946|consen   21 AETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVG-AQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS   96 (970)
T ss_pred             HhHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHH-HcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence            4689999988864 466889999999999985   4666655 45788899999764  89999999999999875542 


Q ss_pred             ------hH------HHH----H-hcCChHHHHHHHccCCHHHHHHHHHHHHHcccc--ccccchhhc-cCChHHHHHHcc
Q 006494          436 ------NK------RHI----A-REGAIPAIIEILQNGTNEARENSAAALFSLSML--DENRVMVGN-LNGIPPLVNLLR  495 (643)
Q Consensus       436 ------~k------~~i----~-~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~--~~~k~~i~~-~g~i~~Lv~lL~  495 (643)
                            .+      .+|    . ..+.|..++.++...+..+|..+...+.+|-..  .+.+..+.. +-+|..|+++|.
T Consensus        97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~  176 (970)
T KOG0946|consen   97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLR  176 (970)
T ss_pred             hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHh
Confidence                  12      122    2 578999999999999999999999999988533  345555555 779999999999


Q ss_pred             cCChhhHHHHHHHHHHhhcCCCchHHHHh-cCcHHHHHHHhccC----ChhhHHHHHHHHHHHhCC-hhhHHHHHhcCcH
Q 006494          496 YGSIRGKKDAATALFNLSINQSNKSRAIK-AGIIPSLLKLLEDK----ALGMVDEALSILQLLASH-PEGRNEIGRLSFI  569 (643)
Q Consensus       496 s~~~~~k~~A~~aL~nLs~~~en~~~iv~-~G~v~~Lv~lL~~~----~~~~~~~Al~iL~nLa~~-~~~~~~i~~~g~i  569 (643)
                      +....++-+|+..|..|.....+..+++. .+++..|+.++...    ..-+++.|+..|.||-.+ ..++.-+.+.+-|
T Consensus       177 DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i  256 (970)
T KOG0946|consen  177 DSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYI  256 (970)
T ss_pred             hhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccH
Confidence            98888899999999999999999999888 89999999999762    234799999999999987 6788888888899


Q ss_pred             HHHHHHHhc---CCh--------HH--HHHHHHHHHHhccCC-----HHHH-HHHHHcCcHHHHHHHHhhC
Q 006494          570 ETLVEIIKN---GTP--------KN--KECATSVLLELGLNN-----SYFI-LAALQYGVYEHLVEITRCG  621 (643)
Q Consensus       570 ~~Lv~lL~~---~s~--------~~--ke~A~~~L~~L~~~~-----~~~~-~~~~~~g~i~~L~~ll~~g  621 (643)
                      |.|.++|..   ++.        ++  --.|+.++..+..-+     ...+ ..+...+++..|..++.+.
T Consensus       257 ~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~  327 (970)
T KOG0946|consen  257 PRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHP  327 (970)
T ss_pred             HHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCC
Confidence            999988853   221        11  123555555555421     1233 3455688999999877554

>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]

Probab=98.58  E-value=1.1e-07  Score=108.54  Aligned_cols=72  Identities=33%  Similarity=0.484  Sum_probs=67.8

Q ss_pred             CCCCCcccCccCcccccCCeecC-CcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCchhhhHHHHHHHHhhc
Q 006494          267 MLVPHEFLCPVTLEIMTDPVIVA-TGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLIVQWCEKN  339 (643)
Q Consensus       267 ~~~p~~f~Cpi~~~~m~dPv~~~-~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~~~  339 (643)
                      .++|++|..||+..+|+|||++| +|++.||+.|++++.+ ..+.|+||.+|....++||..+|.-|..|..++
T Consensus       865 ~dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs-~~tdPFNR~pLt~d~v~pn~eLK~kI~~~~~ek  937 (943)
T KOG2042|consen  865 GDVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLS-DCTDPFNREPLTEDMVSPNEELKAKIRCWIKEK  937 (943)
T ss_pred             ccCchhhhCccccccCCCCccCCcccccccHHHHHHHHhc-CCCCccccccCchhhcCCCHHHHHHHHHHHHHh
Confidence            46999999999999999999998 8999999999999997 589999999999999999999999999997654

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=98.57  E-value=2.6e-08  Score=70.78  Aligned_cols=36  Identities=22%  Similarity=0.734  Sum_probs=23.5

Q ss_pred             CccCcccccC----CeecCCcccccHHhHHHHHhcC---CCCCC
Q 006494          275 CPVTLEIMTD----PVIVATGQTYERESIQRWLNSN---HKTCP  311 (643)
Q Consensus       275 Cpi~~~~m~d----Pv~~~~g~t~~r~~I~~w~~~~---~~~cP  311 (643)
                      ||||.+ |.+    |++++|||+||+.||++|+..+   ...||
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP   43 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP   43 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred             CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence            999999 999    9999999999999999999954   34577

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.56  E-value=2.9e-06  Score=87.11  Aligned_cols=183  Identities=21%  Similarity=0.241  Sum_probs=153.6

Q ss_pred             CCHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccc-cccchhhccCChHHHHHH
Q 006494          415 PDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLD-ENRVMVGNLNGIPPLVNL  493 (643)
Q Consensus       415 ~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~l  493 (643)
                      .+.+-++.|..-|..+..+-+|...+...|++.+++..+++++..+|..|+.++...+.++ ..+..+.+.|+++.|+..
T Consensus        95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~  174 (342)
T KOG2160|consen   95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI  174 (342)
T ss_pred             CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence            4678888999999998888899999999999999999999999999999999999998655 588999999999999999


Q ss_pred             cccC-ChhhHHHHHHHHHHhhc-CCCchHHHHhcCcHHHHHHHhcc--CChhhHHHHHHHHHHHhCChhhHHHHHh-cCc
Q 006494          494 LRYG-SIRGKKDAATALFNLSI-NQSNKSRAIKAGIIPSLLKLLED--KALGMVDEALSILQLLASHPEGRNEIGR-LSF  568 (643)
Q Consensus       494 L~s~-~~~~k~~A~~aL~nLs~-~~en~~~iv~~G~v~~Lv~lL~~--~~~~~~~~Al~iL~nLa~~~~~~~~i~~-~g~  568 (643)
                      +.+. +..++..|+.|+.+|.. ++.....+...++...|...|.+  .+..++..++..+..|.........++. .+.
T Consensus       175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f  254 (342)
T KOG2160|consen  175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGF  254 (342)
T ss_pred             HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence            9765 56778999999999998 55568888899999999999988  4567788999999999886433333444 466


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHhccC
Q 006494          569 IETLVEIIKNGTPKNKECATSVLLELGLN  597 (643)
Q Consensus       569 i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~  597 (643)
                      ...++.+..+.+...+++|+.+++.+...
T Consensus       255 ~~~~~~l~~~l~~~~~e~~l~~~l~~l~~  283 (342)
T KOG2160|consen  255 QRVLENLISSLDFEVNEAALTALLSLLSE  283 (342)
T ss_pred             hHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence            67777777778889999999888776653

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.54  E-value=3e-06  Score=88.46  Aligned_cols=266  Identities=13%  Similarity=0.101  Sum_probs=191.5

Q ss_pred             hHHHHHHHHHhhcCCCHHH--HHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcC-CCHHHHHHHHHHHHhcccCh-
Q 006494          359 LIEEICSLIQNLSSSQLNI--KRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSY-PDSKIQEHTVTALLNLSLDE-  434 (643)
Q Consensus       359 ~~~~i~~Lv~~L~s~~~~~--~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~nLs~~~-  434 (643)
                      ..+.+..|++++.+.+.+.  +.++.+.|..+.  ..+|+..++..| ...++.+-+. ..++.+...+.+|.++..+. 
T Consensus       178 ~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~--~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSe  254 (832)
T KOG3678|consen  178 LDGGLDLLLRMFQAPNLETSVRVEAARLLEQIL--VAENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSE  254 (832)
T ss_pred             ccchHHHHHHHHhCCchhHHHHHHHHHHHHHHH--hhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhH
Confidence            3467888999998877665  788888888775  468999998876 4445444433 35788888999999998765 


Q ss_pred             hhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHcccc--ccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHh
Q 006494          435 TNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSML--DENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNL  512 (643)
Q Consensus       435 ~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~--~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nL  512 (643)
                      +....++..|+++.++.-.+..++....+++-+|.|.+..  ...+..|++..+-..|.-+..+.+.-.+..|+.++.-|
T Consensus       255 et~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vl  334 (832)
T KOG3678|consen  255 ETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVL  334 (832)
T ss_pred             HHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhh
Confidence            5677888999999999888888899999999999998743  45788999989999999998888888899999999999


Q ss_pred             hcCCCchHHHHhcCcHHHHHHHhccCChh-hHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHH
Q 006494          513 SINQSNKSRAIKAGIIPSLLKLLEDKALG-MVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVL  591 (643)
Q Consensus       513 s~~~en~~~iv~~G~v~~Lv~lL~~~~~~-~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L  591 (643)
                      +++.+.....-.+|.+..+-.++.+.++. ....+       .....|+    ..+.+..|+.+|.+...+.+.-++.-|
T Consensus       335 at~KE~E~~VrkS~TlaLVEPlva~~DP~~FARD~-------hd~aQG~----~~d~LqRLvPlLdS~R~EAq~i~AF~l  403 (832)
T KOG3678|consen  335 ATNKEVEREVRKSGTLALVEPLVASLDPGRFARDA-------HDYAQGR----GPDDLQRLVPLLDSNRLEAQCIGAFYL  403 (832)
T ss_pred             hhhhhhhHHHhhccchhhhhhhhhccCcchhhhhh-------hhhhccC----ChHHHHHhhhhhhcchhhhhhhHHHHH
Confidence            99998887777777665544444443332 11111       0001111    124688899999865555554443333


Q ss_pred             HHhccC--CHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494          592 LELGLN--NSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK  638 (643)
Q Consensus       592 ~~L~~~--~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~  638 (643)
                      +.-+.-  .......+-+-|++..|.++..+.+.-+..-|.+.|+.+.+
T Consensus       404 ~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGE  452 (832)
T KOG3678|consen  404 CAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGE  452 (832)
T ss_pred             HHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhcc
Confidence            222211  11223335567999999999998888888999999999984

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=98.53  E-value=3e-08  Score=98.64  Aligned_cols=68  Identities=18%  Similarity=0.329  Sum_probs=62.4

Q ss_pred             CCCcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCchhhhHHHHHHHHh
Q 006494          269 VPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLIVQWCE  337 (643)
Q Consensus       269 ~p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~  337 (643)
                      +.+-++|-||.++|.-||++|||||||.-||.+++.. +..||.|..++....+.-|+.+..+|+.+..
T Consensus        20 lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~-~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~~   87 (442)
T KOG0287|consen   20 LDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY-KPQCPTCCVTVTESDLRNNRILDEIVKSLNF   87 (442)
T ss_pred             hHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhcc-CCCCCceecccchhhhhhhhHHHHHHHHHHH
Confidence            3466899999999999999999999999999999997 7899999999999999999999999987754

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.49  E-value=6.2e-07  Score=78.84  Aligned_cols=152  Identities=18%  Similarity=0.142  Sum_probs=127.4

Q ss_pred             CChHHHHHHHcc-CCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHH
Q 006494          444 GAIPAIIEILQN-GTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRA  522 (643)
Q Consensus       444 g~i~~Lv~lL~~-~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~i  522 (643)
                      +++..|+.-..+ .+.++++...+-|.|++.++-|-..+.+..++...++.|...+...+..++..|+|||..+.|...|
T Consensus        16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I   95 (173)
T KOG4646|consen   16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFI   95 (173)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHH
Confidence            456667765554 5789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC-hhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhc
Q 006494          523 IKAGIIPSLLKLLEDKALGMVDEALSILQLLASH-PEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELG  595 (643)
Q Consensus       523 v~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~  595 (643)
                      .+++++|.++..++++...++..|+..|..|+.. ..-+..+.+..++..+.+.-.+.+.+.+..|-..|-..|
T Consensus        96 ~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl~~~~  169 (173)
T KOG4646|consen   96 REALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESKSHDERNLASAFLDKHV  169 (173)
T ss_pred             HHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHhhHHHHHHHHHHHHhhc
Confidence            9999999999999999888999999999999986 456777777666666665554555566655655555444

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.45  E-value=1.4e-07  Score=67.13  Aligned_cols=39  Identities=36%  Similarity=0.945  Sum_probs=36.1

Q ss_pred             CccCcccccCCe-ecCCcccccHHhHHHHHh-cCCCCCCCC
Q 006494          275 CPVTLEIMTDPV-IVATGQTYERESIQRWLN-SNHKTCPKT  313 (643)
Q Consensus       275 Cpi~~~~m~dPv-~~~~g~t~~r~~I~~w~~-~~~~~cP~~  313 (643)
                      ||||.+.+.+|+ +++|||+|++.||.+|+. .+...||.|
T Consensus         1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence            899999999999 899999999999999999 566779976

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.43  E-value=9.2e-06  Score=91.60  Aligned_cols=254  Identities=20%  Similarity=0.197  Sum_probs=146.2

Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhccc-ChhhHH
Q 006494          360 IEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSL-DETNKR  438 (643)
Q Consensus       360 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~k~  438 (643)
                      .-.+..+.+.|.++++.++.-|++.+.++.  +++....     .++.+.+++.++++.++..|+.++..+.. +++   
T Consensus        78 ~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~---  147 (526)
T PF01602_consen   78 ILIINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEP-----LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD---  147 (526)
T ss_dssp             HHHHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHH-----HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC---
T ss_pred             HHHHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhH-----HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH---
Confidence            346667777777888888888888887766  3333322     34667777888888888888877777653 222   


Q ss_pred             HHHhcCChHHHHHHHccCCHHHHHHHHHHHHHc-cccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCC
Q 006494          439 HIAREGAIPAIIEILQNGTNEARENSAAALFSL-SMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQS  517 (643)
Q Consensus       439 ~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~L-s~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~e  517 (643)
                      .+... .++.+..+|.+.++.++..|+.++..+ ...+... . .-...+..|.+++...++-.+...+..|..++....
T Consensus       148 ~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~-~-~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~  224 (526)
T PF01602_consen  148 LVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYK-S-LIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEP  224 (526)
T ss_dssp             CHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHT-T-HHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSH
T ss_pred             HHHHH-HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhh-h-hHHHHHHHhhhcccccchHHHHHHHHHHHhcccCCh
Confidence            11122 577777777777777777777777777 1111111 0 001233444444445566666666666666554332


Q ss_pred             chHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccC
Q 006494          518 NKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLN  597 (643)
Q Consensus       518 n~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~  597 (643)
                      ....-  ...++.+..++.+.++.++-+|+.++..+...+.     .-..+++.|+.++.+.++..+..++..|..++..
T Consensus       225 ~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~  297 (526)
T PF01602_consen  225 EDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQS  297 (526)
T ss_dssp             HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCH
T ss_pred             hhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcc
Confidence            22200  3456666666666666666777777776666544     2234566777777766666777777777777765


Q ss_pred             CHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494          598 NSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK  638 (643)
Q Consensus       598 ~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~  638 (643)
                      .+...    . .....+..+..+.+..+|.+|..+|..+..
T Consensus       298 ~~~~v----~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~  333 (526)
T PF01602_consen  298 NPPAV----F-NQSLILFFLLYDDDPSIRKKALDLLYKLAN  333 (526)
T ss_dssp             CHHHH----G-THHHHHHHHHCSSSHHHHHHHHHHHHHH--
T ss_pred             cchhh----h-hhhhhhheecCCCChhHHHHHHHHHhhccc
Confidence            52211    1 222222223335566666666666665543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PHA02929 N1R/p28-like protein; Provisional

Probab=98.40  E-value=2.8e-07  Score=90.75  Aligned_cols=48  Identities=19%  Similarity=0.419  Sum_probs=41.4

Q ss_pred             CCcccCccCcccccCC--------eecCCcccccHHhHHHHHhcCCCCCCCCCcccC
Q 006494          270 PHEFLCPVTLEIMTDP--------VIVATGQTYERESIQRWLNSNHKTCPKTGQILD  318 (643)
Q Consensus       270 p~~f~Cpi~~~~m~dP--------v~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~  318 (643)
                      ..+..||||++.+.+|        ++++|||+||+.||.+|+.. +.+||.||.++.
T Consensus       172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPlCR~~~~  227 (238)
T PHA02929        172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPVCRTPFI  227 (238)
T ss_pred             CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCCCCCEee
Confidence            4568899999987764        56789999999999999986 679999998875

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.38  E-value=2.6e-07  Score=68.77  Aligned_cols=47  Identities=28%  Similarity=0.541  Sum_probs=41.1

Q ss_pred             CcccCccCcccccCCeecCCccc-ccHHhHHHHHhcCCCCCCCCCcccC
Q 006494          271 HEFLCPVTLEIMTDPVIVATGQT-YERESIQRWLNSNHKTCPKTGQILD  318 (643)
Q Consensus       271 ~~f~Cpi~~~~m~dPv~~~~g~t-~~r~~I~~w~~~~~~~cP~~~~~l~  318 (643)
                      +++.|+||++-..++++.||||. ||..|+.+|+.. ...||+|++++.
T Consensus         1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~   48 (50)
T PF13920_consen    1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLKR-KKKCPICRQPIE   48 (50)
T ss_dssp             -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHT-TSBBTTTTBB-S
T ss_pred             CcCCCccCCccCCceEEeCCCChHHHHHHhHHhccc-CCCCCcCChhhc
Confidence            46889999999999999999999 999999999994 689999999875

...

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.38  E-value=2.5e-06  Score=75.12  Aligned_cols=157  Identities=14%  Similarity=0.113  Sum_probs=134.6

Q ss_pred             hhccCChHHHHHHcccC-ChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhh
Q 006494          481 VGNLNGIPPLVNLLRYG-SIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEG  559 (643)
Q Consensus       481 i~~~g~i~~Lv~lL~s~-~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~  559 (643)
                      +...+.+..|++-.+.. +.+.|+....-|.|.+.++-|-..+.+..++...+..|..++..+++.+++.|+|+|..+.+
T Consensus        12 i~Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n   91 (173)
T KOG4646|consen   12 IDRLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTN   91 (173)
T ss_pred             CcHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHH
Confidence            44456777888777654 78899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhh
Q 006494          560 RNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMS  637 (643)
Q Consensus       560 ~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~  637 (643)
                      .+.|.+++++|.++..+.+..+..--.|+..|..||-++......+....++..+.+...+.+-+-+.-|...|....
T Consensus        92 ~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl~~~~  169 (173)
T KOG4646|consen   92 AKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESKSHDERNLASAFLDKHV  169 (173)
T ss_pred             HHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHhhHHHHHHHHHHHHhhc
Confidence            999999999999999998877777888999999999988888888877777877777776666777777777776543

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.37  E-value=2.1e-07  Score=91.71  Aligned_cols=54  Identities=17%  Similarity=0.358  Sum_probs=47.7

Q ss_pred             CCCcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCC
Q 006494          269 VPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLA  323 (643)
Q Consensus       269 ~p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~  323 (643)
                      .+..+.|-||++-++||--+||||.||.+||..|+.. ...||.||+++.+..++
T Consensus       236 ~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~e-k~eCPlCR~~~~pskvi  289 (293)
T KOG0317|consen  236 PEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSE-KAECPLCREKFQPSKVI  289 (293)
T ss_pred             CCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcc-ccCCCcccccCCCccee
Confidence            3456999999999999999999999999999999997 46699999998876543

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.36  E-value=3.9e-05  Score=79.92  Aligned_cols=272  Identities=14%  Similarity=0.091  Sum_probs=197.2

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhH---HHHHhhCChHHHHHHhcC-CCHHHHHHHHHHHHhcccChhhHH
Q 006494          363 ICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNR---ILIANNGGIRPLVQLLSY-PDSKIQEHTVTALLNLSLDETNKR  438 (643)
Q Consensus       363 i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r---~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~nLs~~~~~k~  438 (643)
                      -.+.++.|...++-....+.+.+..++......-   ..-..   ...|-..+++ .+.+...-|+++|-.+...++.|.
T Consensus       116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~~---~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~  192 (442)
T KOG2759|consen  116 WLSFLNLLNRQDTFIVEMSFRILSKLACFGNCKMELSELDVY---KGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRY  192 (442)
T ss_pred             hHHHHHHHhcCChHHHHHHHHHHHHHHHhccccccchHHHHH---HHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhh
Confidence            4566777877787777767777777764332211   11111   2234445544 567788888999999999999999


Q ss_pred             HHHhcCChHHHHHHHc-c-CCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccC-ChhhHHHHHHHHHHhhcC
Q 006494          439 HIAREGAIPAIIEILQ-N-GTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYG-SIRGKKDAATALFNLSIN  515 (643)
Q Consensus       439 ~i~~~g~i~~Lv~lL~-~-~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~-~~~~k~~A~~aL~nLs~~  515 (643)
                      .++.++++..++..+. + .+...+.+..-+++.|++++...+.+...+.|+.|++++++. ...+.+-.+.++.|++..
T Consensus       193 ~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k  272 (442)
T KOG2759|consen  193 AFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDK  272 (442)
T ss_pred             eeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9998899999999984 3 478899999999999999998888887789999999999876 567888899999999986


Q ss_pred             CC-------chHHHHhcCcHHHHHHHhcc--CChhhHHHHHHH-------HHHHhCChh---------------------
Q 006494          516 QS-------NKSRAIKAGIIPSLLKLLED--KALGMVDEALSI-------LQLLASHPE---------------------  558 (643)
Q Consensus       516 ~e-------n~~~iv~~G~v~~Lv~lL~~--~~~~~~~~Al~i-------L~nLa~~~~---------------------  558 (643)
                      .+       ....|+..++.+.+-.+...  .++++.+..-.+       ...|++.++                     
T Consensus       273 ~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~F  352 (442)
T KOG2759|consen  273 GPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKF  352 (442)
T ss_pred             CchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccch
Confidence            63       33556666666655444433  344444332222       223333222                     


Q ss_pred             ---hHHHHHhc--CcHHHHHHHHhcCC-hHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHH
Q 006494          559 ---GRNEIGRL--SFIETLVEIIKNGT-PKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSL  632 (643)
Q Consensus       559 ---~~~~i~~~--g~i~~Lv~lL~~~s-~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~l  632 (643)
                         +...+.+.  ..+..|+++|...+ |..-.-|+.=+....++.|+-...+.+.|+-..+++++.+.++++|-.|...
T Consensus       353 W~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALla  432 (442)
T KOG2759|consen  353 WRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLA  432 (442)
T ss_pred             HHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHH
Confidence               33344333  46888999998755 6666777888888888888888888899999999999999999999999888


Q ss_pred             HHHhh
Q 006494          633 LQHMS  637 (643)
Q Consensus       633 L~~l~  637 (643)
                      ++.|-
T Consensus       433 vQ~lm  437 (442)
T KOG2759|consen  433 VQKLM  437 (442)
T ss_pred             HHHHH
Confidence            87653

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.32  E-value=0.00016  Score=72.60  Aligned_cols=271  Identities=15%  Similarity=0.153  Sum_probs=181.8

Q ss_pred             HHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHh-hCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHH
Q 006494          362 EICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIAN-NGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHI  440 (643)
Q Consensus       362 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i  440 (643)
                      .+..++..|.+.++.++..|+..+..++..  ..+..... .-.++.+..++...++  .+.|+++|.|++.++..+..+
T Consensus         4 ~l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~l   79 (353)
T KOG2973|consen    4 ELVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKL   79 (353)
T ss_pred             HHHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHH
Confidence            356788899999999999999999888854  44444432 3467888899887666  678999999999999998888


Q ss_pred             HhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhc-------cCChHHHHHHcccC-Chh-hHHHHHHHHHH
Q 006494          441 AREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGN-------LNGIPPLVNLLRYG-SIR-GKKDAATALFN  511 (643)
Q Consensus       441 ~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~-------~g~i~~Lv~lL~s~-~~~-~k~~A~~aL~n  511 (643)
                      ... .+..++..+.+.........+.+|.||+..+.....+..       .|.+.....+.+.+ +.. --..-+..+.|
T Consensus        80 l~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~n  158 (353)
T KOG2973|consen   80 LQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFAN  158 (353)
T ss_pred             HHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHH
Confidence            866 888888888887555556788899999987764333322       23334444444433 322 22345677889


Q ss_pred             hhcCCCchHHHHhcCcHHHH-HHHhccCChhhH-HHHHHHHHHHhCChhhHHHHHhc--CcHHHHH--------------
Q 006494          512 LSINQSNKSRAIKAGIIPSL-LKLLEDKALGMV-DEALSILQLLASHPEGRNEIGRL--SFIETLV--------------  573 (643)
Q Consensus       512 Ls~~~en~~~iv~~G~v~~L-v~lL~~~~~~~~-~~Al~iL~nLa~~~~~~~~i~~~--g~i~~Lv--------------  573 (643)
                      |+.....|..+.+...++.= +--+.+.+..+. ...+++|.|.|........+...  +.+|.|+              
T Consensus       159 ls~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm  238 (353)
T KOG2973|consen  159 LSQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDM  238 (353)
T ss_pred             HhhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHH
Confidence            99998888888776533321 111222233332 34578888988876665555542  2233322              


Q ss_pred             -------HHHh-----cCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhC-CHHHHHHHHHHHHHhhh
Q 006494          574 -------EIIK-----NGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCG-TNRGQRKANSLLQHMSK  638 (643)
Q Consensus       574 -------~lL~-----~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g-~~~~k~~A~~lL~~l~~  638 (643)
                             ++|.     ..++.++..-+.+|..||....++ ..+...|+.+.|-++=... ++.++++...+...+.+
T Consensus       239 ~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GR-e~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~  315 (353)
T KOG2973|consen  239 AKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGR-EVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVR  315 (353)
T ss_pred             hcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhH-HHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence                   2221     256788889999999999865543 4455677777777665443 67888888888887766

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=98.30  E-value=5.5e-05  Score=81.33  Aligned_cols=218  Identities=17%  Similarity=0.182  Sum_probs=158.8

Q ss_pred             HHHHHHHHHhhcC-CCHHHHHHHHHHHHHhhhhChhhHHHHHhh-----CChHHHHHHhcCCCHHHHHHHHHHHHhcccC
Q 006494          360 IEEICSLIQNLSS-SQLNIKRDSVMKIRMLSKENPDNRILIANN-----GGIRPLVQLLSYPDSKIQEHTVTALLNLSLD  433 (643)
Q Consensus       360 ~~~i~~Lv~~L~s-~~~~~~~~Al~~L~~La~~~~~~r~~i~~~-----g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~  433 (643)
                      ...+..+++.|+. ..+++..-.+.-+..+...++..-..+.+.     ....+++.+|..+|.-++..|...|..|...
T Consensus        52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~  131 (429)
T cd00256          52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACF  131 (429)
T ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhc
Confidence            3567777777764 455666666777777776665555555543     4667788899999999999999999887532


Q ss_pred             -hhhHHHHHhcCChHHHHHHHccC-CHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccC--ChhhHHHHHHHH
Q 006494          434 -ETNKRHIAREGAIPAIIEILQNG-TNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYG--SIRGKKDAATAL  509 (643)
Q Consensus       434 -~~~k~~i~~~g~i~~Lv~lL~~~-~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~--~~~~k~~A~~aL  509 (643)
                       ..+.......-.+..+...|+++ +...+..++.+|..|...+++|..+.+.++++.|+++|+..  +......++.++
T Consensus       132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~l  211 (429)
T cd00256         132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCI  211 (429)
T ss_pred             CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHH
Confidence             21111111111344556666654 46778888999999999999999999988999999999764  457889999999


Q ss_pred             HHhhcCCCchHHHHhcCcHHHHHHHhcc-CChhhHHHHHHHHHHHhCCh-------hhHHHHHhcCcHHHHHHHHhc
Q 006494          510 FNLSINQSNKSRAIKAGIIPSLLKLLED-KALGMVDEALSILQLLASHP-------EGRNEIGRLSFIETLVEIIKN  578 (643)
Q Consensus       510 ~nLs~~~en~~~iv~~G~v~~Lv~lL~~-~~~~~~~~Al~iL~nLa~~~-------~~~~~i~~~g~i~~Lv~lL~~  578 (643)
                      +-|+.+++....+...|.++.|+++++. ....++.-++++|.||...+       .....++..|. +.++..|..
T Consensus       212 WlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l-~~~l~~L~~  287 (429)
T cd00256         212 WLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKV-LKTLQSLEQ  287 (429)
T ss_pred             HHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcCh-HHHHHHHhc
Confidence            9999988877777789999999999986 55678999999999999853       23345555555 445555543

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=98.28  E-value=2.5e-07  Score=70.26  Aligned_cols=58  Identities=19%  Similarity=0.348  Sum_probs=33.6

Q ss_pred             cccCccCcccccCCee-cCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCchhhhHHHH
Q 006494          272 EFLCPVTLEIMTDPVI-VATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLI  332 (643)
Q Consensus       272 ~f~Cpi~~~~m~dPv~-~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI  332 (643)
                      -.+|++|.++|++||. ..|.|.||+.||.+.+..   .||+|+.|....++.-|..+.++|
T Consensus         7 lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~---~CPvC~~Paw~qD~~~NrqLd~~i   65 (65)
T PF14835_consen    7 LLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS---ECPVCHTPAWIQDIQINRQLDSMI   65 (65)
T ss_dssp             TTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT---B-SSS--B-S-SS----HHHHHHH
T ss_pred             hcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC---CCCCcCChHHHHHHHhhhhhhccC
Confidence            4689999999999996 579999999999886653   499999999999999999998876

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=98.25  E-value=5.2e-07  Score=88.11  Aligned_cols=66  Identities=17%  Similarity=0.195  Sum_probs=58.0

Q ss_pred             CCcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCchhhhHHHHHHHH
Q 006494          270 PHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLIVQWC  336 (643)
Q Consensus       270 p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~  336 (643)
                      ..-.+|-||.+.++-|++++||||||.-||..++.. ++.||.|+.+....-+..+..++..++.+.
T Consensus        23 Ds~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~-qp~CP~Cr~~~~esrlr~~s~~~ei~es~~   88 (391)
T COG5432          23 DSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGT-QPFCPVCREDPCESRLRGSSGSREINESHA   88 (391)
T ss_pred             hhHHHhhhhhheeecceecccccchhHHHHHHHhcC-CCCCccccccHHhhhcccchhHHHHHHhhh
Confidence            455799999999999999999999999999999987 689999999988777777777777776664

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.23  E-value=4.8e-05  Score=85.79  Aligned_cols=255  Identities=20%  Similarity=0.253  Sum_probs=184.8

Q ss_pred             HHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHH
Q 006494          362 EICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIA  441 (643)
Q Consensus       362 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~  441 (643)
                      .....++.+.+.+...+.-+--.+..+...+++.-..     ++..+.+=|.++++.++..|+++|.++.. ++...   
T Consensus        43 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l-----~~n~l~kdl~~~n~~~~~lAL~~l~~i~~-~~~~~---  113 (526)
T PF01602_consen   43 LFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLIL-----IINSLQKDLNSPNPYIRGLALRTLSNIRT-PEMAE---  113 (526)
T ss_dssp             THHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHH-----HHHHHHHHHCSSSHHHHHHHHHHHHHH-S-HHHHH---
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHH-----HHHHHHHhhcCCCHHHHHHHHhhhhhhcc-cchhh---
Confidence            4667788888888888777777777777666552222     45668888899999999999999999872 22222   


Q ss_pred             hcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHH
Q 006494          442 REGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSR  521 (643)
Q Consensus       442 ~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~  521 (643)
                        ..++.+.+++.++++.+|..|+-++..+...+..  .+... .++.+..+|.+.++.++..|+.++..+ ..++....
T Consensus       114 --~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~--~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~  187 (526)
T PF01602_consen  114 --PLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD--LVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK  187 (526)
T ss_dssp             --HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC--CHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT
T ss_pred             --HHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH--HHHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh
Confidence              2477888999999999999999999998644222  22222 589999999999999999999999999 11111100


Q ss_pred             HHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHH
Q 006494          522 AIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYF  601 (643)
Q Consensus       522 iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~  601 (643)
                      -.-...+..|.+++...++-.+..++.+|..++........-  ...++.+..++.+.++.+.-.|+.++..+.....  
T Consensus       188 ~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~--  263 (526)
T PF01602_consen  188 SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE--  263 (526)
T ss_dssp             THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH--
T ss_pred             hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH--
Confidence            111233444555555677778888899998888763322211  4578888999988888899899999988877544  


Q ss_pred             HHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhhc
Q 006494          602 ILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSKR  639 (643)
Q Consensus       602 ~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~~  639 (643)
                          .-..+++.|..++.+.++..+-.|...|..+...
T Consensus       264 ----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~  297 (526)
T PF01602_consen  264 ----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQS  297 (526)
T ss_dssp             ----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCH
T ss_pred             ----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcc
Confidence                2245799999999988999999999999888654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PF05536 Neurochondrin: Neurochondrin

Probab=98.22  E-value=2.3e-05  Score=87.75  Aligned_cols=152  Identities=26%  Similarity=0.265  Sum_probs=119.5

Q ss_pred             ChHHHHHHHccCCHHHHHHHHHHHHHcccccc----ccchhhccCChHHHHHHcccC-------ChhhHHHHHHHHHHhh
Q 006494          445 AIPAIIEILQNGTNEARENSAAALFSLSMLDE----NRVMVGNLNGIPPLVNLLRYG-------SIRGKKDAATALFNLS  513 (643)
Q Consensus       445 ~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~----~k~~i~~~g~i~~Lv~lL~s~-------~~~~k~~A~~aL~nLs  513 (643)
                      .++..+.+|+..+.+-|-.+...+-++...++    .+..+.+.=+++.|-.+|+++       ....+.-|+.+|..+|
T Consensus         6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~   85 (543)
T PF05536_consen    6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC   85 (543)
T ss_pred             HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence            46677888888775555555566666654333    244566766678899999874       2455677888899999


Q ss_pred             cCCCch--HHHHhcCcHHHHHHHhccCCh-hhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHH
Q 006494          514 INQSNK--SRAIKAGIIPSLLKLLEDKAL-GMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSV  590 (643)
Q Consensus       514 ~~~en~--~~iv~~G~v~~Lv~lL~~~~~-~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~  590 (643)
                      ..++..  ..++  +-||.|++++...+. .++..|+.+|..++.+++|+..+.+.|+++.|++.+.+ .+...+.|+.+
T Consensus        86 ~~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~l  162 (543)
T PF05536_consen   86 RDPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNL  162 (543)
T ss_pred             CChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHH
Confidence            977653  4444  479999999988666 89999999999999999999999999999999999987 66789999999


Q ss_pred             HHHhccCCH
Q 006494          591 LLELGLNNS  599 (643)
Q Consensus       591 L~~L~~~~~  599 (643)
                      |.+++....
T Consensus       163 L~~Lls~~~  171 (543)
T PF05536_consen  163 LLNLLSRLG  171 (543)
T ss_pred             HHHHHHhcc
Confidence            999988644

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=98.20  E-value=7.4e-07  Score=64.36  Aligned_cols=40  Identities=30%  Similarity=0.744  Sum_probs=33.9

Q ss_pred             cCccCccccc---CCeecCCcccccHHhHHHHHhcCCCCCCCCC
Q 006494          274 LCPVTLEIMT---DPVIVATGQTYERESIQRWLNSNHKTCPKTG  314 (643)
Q Consensus       274 ~Cpi~~~~m~---dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~  314 (643)
                      .||||++-|.   .++.++|||.|++.||.+|+.. +.+||.||
T Consensus         2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR   44 (44)
T ss_dssp             CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred             CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence            4999999995   4666899999999999999998 47999985

...

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.17  E-value=1.6e-06  Score=62.40  Aligned_cols=43  Identities=35%  Similarity=0.798  Sum_probs=38.7

Q ss_pred             cCccCcccccCCeecC-CcccccHHhHHHHHhcCCCCCCCCCcc
Q 006494          274 LCPVTLEIMTDPVIVA-TGQTYERESIQRWLNSNHKTCPKTGQI  316 (643)
Q Consensus       274 ~Cpi~~~~m~dPv~~~-~g~t~~r~~I~~w~~~~~~~cP~~~~~  316 (643)
                      .||||++.+.+|+.+. |||.|+..|+.+|+..+...||.|+..
T Consensus         1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~   44 (45)
T cd00162           1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP   44 (45)
T ss_pred             CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence            4999999999998876 999999999999999877889999865

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.17  E-value=8.8e-07  Score=81.16  Aligned_cols=54  Identities=20%  Similarity=0.514  Sum_probs=45.6

Q ss_pred             CcccCccCcccccC--CeecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCch
Q 006494          271 HEFLCPVTLEIMTD--PVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPN  325 (643)
Q Consensus       271 ~~f~Cpi~~~~m~d--Pv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn  325 (643)
                      .-|.||||++-++.  ||.+.|||.||+.||+.-++. ...||.|+..+.+..+.+-
T Consensus       130 ~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~-~~~CP~C~kkIt~k~~~rI  185 (187)
T KOG0320|consen  130 GTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN-TNKCPTCRKKITHKQFHRI  185 (187)
T ss_pred             cccCCCceecchhhccccccccchhHHHHHHHHHHHh-CCCCCCcccccchhhheec
Confidence            34999999999986  555789999999999999997 4789999998887766543

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.11  E-value=1.8e-06  Score=90.51  Aligned_cols=68  Identities=26%  Similarity=0.530  Sum_probs=58.5

Q ss_pred             CCCcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCchhhhHHHHHHHHhhc
Q 006494          269 VPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLIVQWCEKN  339 (643)
Q Consensus       269 ~p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~~~  339 (643)
                      ..+++.||||++.+.+|++++|||+||+.||..|+. +...||.|+. . ...+.+|..+..++......+
T Consensus        10 ~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~-~~~~~~n~~l~~~~~~~~~~~   77 (386)
T KOG2177|consen   10 LQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP-P-SRNLRPNVLLANLVERLRQLR   77 (386)
T ss_pred             ccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC-c-hhccCccHHHHHHHHHHHhcC
Confidence            458899999999999999999999999999999999 6678999996 2 227779999999888876543

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=98.09  E-value=0.00051  Score=75.31  Aligned_cols=148  Identities=18%  Similarity=0.108  Sum_probs=113.5

Q ss_pred             CHHHHHHHHHHHHHccc-cccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhc-CCCchHHHHhcCcHHHHHHH
Q 006494          457 TNEARENSAAALFSLSM-LDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSI-NQSNKSRAIKAGIIPSLLKL  534 (643)
Q Consensus       457 ~~~~~~~Aa~~L~~Ls~-~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~-~~en~~~iv~~G~v~~Lv~l  534 (643)
                      +...+..|+-.+.+++. .+..+..+....++.+|++++..+...++..++.+|.||.. ..+-+.++++.|+|..|.++
T Consensus       390 d~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~  469 (678)
T KOG1293|consen  390 DHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESM  469 (678)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHH
Confidence            34444333334444442 33345555567799999999988899999999999999997 66669999999999999999


Q ss_pred             hccCChhhHHHHHHHHHHHhCChhh--HHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHH
Q 006494          535 LEDKALGMVDEALSILQLLASHPEG--RNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILA  604 (643)
Q Consensus       535 L~~~~~~~~~~Al~iL~nLa~~~~~--~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~  604 (643)
                      +.+.+..+...++++|.++..+.+.  +....+.-....++.+..+....++|.+...|.|+..+..+....
T Consensus       470 ~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdf  541 (678)
T KOG1293|consen  470 LTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDF  541 (678)
T ss_pred             hcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHH
Confidence            9998888999999999999998543  333333334566788888899999999999999998886544433

>smart00184 RING Ring finger

Probab=98.06  E-value=3.4e-06  Score=58.53  Aligned_cols=39  Identities=44%  Similarity=1.008  Sum_probs=35.9

Q ss_pred             CccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCC
Q 006494          275 CPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKT  313 (643)
Q Consensus       275 Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~  313 (643)
                      ||||++..++|++++|||.|+..|+.+|+..+...||.|
T Consensus         1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence            899999999999999999999999999999666789975

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>PF05536 Neurochondrin: Neurochondrin

Probab=98.04  E-value=0.00026  Score=79.41  Aligned_cols=231  Identities=18%  Similarity=0.192  Sum_probs=163.5

Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhh---HHHHHhhCChHHHHHHhcCC-------CHHHHHHHHHHHHhc
Q 006494          361 EEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDN---RILIANNGGIRPLVQLLSYP-------DSKIQEHTVTALLNL  430 (643)
Q Consensus       361 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~---r~~i~~~g~i~~Lv~lL~~~-------~~~~~~~a~~~L~nL  430 (643)
                      ..+...++.|++.+.+.+..++--+..+.+.++..   ++.+.++=+.++|-++|.++       ....+.-|+.+|..+
T Consensus         5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f   84 (543)
T PF05536_consen    5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF   84 (543)
T ss_pred             HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            56888899999988888899999999998876643   44577877789999999873       345567789999999


Q ss_pred             ccChhhHH--HHHhcCChHHHHHHHccCCH-HHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHH
Q 006494          431 SLDETNKR--HIAREGAIPAIIEILQNGTN-EARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAAT  507 (643)
Q Consensus       431 s~~~~~k~--~i~~~g~i~~Lv~lL~~~~~-~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~  507 (643)
                      +.+++...  .++.  -||.|++++.+++. ++...+..+|..++..++.+..+.+.|+++.|+..+.+ .......|+.
T Consensus        85 ~~~~~~a~~~~~~~--~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~  161 (543)
T PF05536_consen   85 CRDPELASSPQMVS--RIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALN  161 (543)
T ss_pred             cCChhhhcCHHHHH--HHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHH
Confidence            98776653  4443  59999999988766 88999999999999999999999999999999999988 5567889999


Q ss_pred             HHHHhhcCCCchHHHHh----cCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhh--HHHHHhcCc----HHHHHHHHh
Q 006494          508 ALFNLSINQSNKSRAIK----AGIIPSLLKLLEDKALGMVDEALSILQLLASHPEG--RNEIGRLSF----IETLVEIIK  577 (643)
Q Consensus       508 aL~nLs~~~en~~~iv~----~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~--~~~i~~~g~----i~~Lv~lL~  577 (643)
                      ++.+++...+....--.    ..+++.|-+.+........-.++..|..+-...+.  .........    ...|..+|.
T Consensus       162 lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~  241 (543)
T PF05536_consen  162 LLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQ  241 (543)
T ss_pred             HHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHh
Confidence            99998875442111111    13445555555444444556677888777666421  112222233    344455565


Q ss_pred             c-CChHHHHHHHHHHHHh
Q 006494          578 N-GTPKNKECATSVLLEL  594 (643)
Q Consensus       578 ~-~s~~~ke~A~~~L~~L  594 (643)
                      + .++..|..|+.+...|
T Consensus       242 sr~~~~~R~~al~Laa~L  259 (543)
T PF05536_consen  242 SRLTPSQRDPALNLAASL  259 (543)
T ss_pred             cCCCHHHHHHHHHHHHHH
Confidence            5 3456666655544443

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.02  E-value=0.0011  Score=69.56  Aligned_cols=237  Identities=14%  Similarity=0.094  Sum_probs=177.9

Q ss_pred             HHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccCh------hh----HHHHHhcCChHHHH
Q 006494          381 SVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDE------TN----KRHIAREGAIPAII  450 (643)
Q Consensus       381 Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~------~~----k~~i~~~g~i~~Lv  450 (643)
                      .+..+..++ .-|+.-..+++.++++.|+.+|.+.+.++....+..|..|...+      +.    -..+++.+.++.|+
T Consensus       104 ~IQ~mhvlA-t~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLv  182 (536)
T KOG2734|consen  104 IIQEMHVLA-TMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLV  182 (536)
T ss_pred             HHHHHHhhh-cChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHH
Confidence            445566666 56777888899999999999999999999999999998887322      22    23555788999998


Q ss_pred             HHHccCC------HHHHHHHHHHHHHccc-cccccchhhccCChHHHHHHcccC--ChhhHHHHHHHHHHhhc-CCCchH
Q 006494          451 EILQNGT------NEARENSAAALFSLSM-LDENRVMVGNLNGIPPLVNLLRYG--SIRGKKDAATALFNLSI-NQSNKS  520 (643)
Q Consensus       451 ~lL~~~~------~~~~~~Aa~~L~~Ls~-~~~~k~~i~~~g~i~~Lv~lL~s~--~~~~k~~A~~aL~nLs~-~~en~~  520 (643)
                      .-+..-+      ....+++.+.+-|+.. .++....+++.|.+..|+.-+...  -...+..|..+|.-+.. ..+|+.
T Consensus       183 qnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~  262 (536)
T KOG2734|consen  183 QNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRK  262 (536)
T ss_pred             HHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhh
Confidence            8776422      2345677777788764 455777888888888888755433  45677888888887776 445888


Q ss_pred             HHHhcCcHHHHHHHhcc---C------ChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHH
Q 006494          521 RAIKAGIIPSLLKLLED---K------ALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVL  591 (643)
Q Consensus       521 ~iv~~G~v~~Lv~lL~~---~------~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L  591 (643)
                      ......++..|++-+.-   .      ..++.+....+|+.+...+.++..++...++....-+++. ....+..|+.+|
T Consensus       263 ~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvL  341 (536)
T KOG2734|consen  263 LLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVL  341 (536)
T ss_pred             hhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHH
Confidence            88888999999887742   2      2356777888999999999999999998888877666665 456677899999


Q ss_pred             HHhccCCH--HHHHHHHHcCcHHHHHHHHh
Q 006494          592 LELGLNNS--YFILAALQYGVYEHLVEITR  619 (643)
Q Consensus       592 ~~L~~~~~--~~~~~~~~~g~i~~L~~ll~  619 (643)
                      -....+.+  .+|...++.++...++.+..
T Consensus       342 d~am~g~~gt~~C~kfVe~lGLrtiF~~FM  371 (536)
T KOG2734|consen  342 DHAMFGPEGTPNCNKFVEILGLRTIFPLFM  371 (536)
T ss_pred             HHHHhCCCchHHHHHHHHHHhHHHHHHHHh
Confidence            98888766  67888888776666665433

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.00  E-value=0.00011  Score=82.17  Aligned_cols=150  Identities=13%  Similarity=0.095  Sum_probs=124.1

Q ss_pred             cCChHHHHHHcccC-ChhhHHHHHHHHHHhhc-CCCchHHHHhcCcHHHHHHHhcc-CChhhHHHHHHHHHHHhCChhhH
Q 006494          484 LNGIPPLVNLLRYG-SIRGKKDAATALFNLSI-NQSNKSRAIKAGIIPSLLKLLED-KALGMVDEALSILQLLASHPEGR  560 (643)
Q Consensus       484 ~g~i~~Lv~lL~s~-~~~~k~~A~~aL~nLs~-~~en~~~iv~~G~v~~Lv~lL~~-~~~~~~~~Al~iL~nLa~~~~~~  560 (643)
                      .-.+|.|+.+|+.+ +.+....|++||++||. .|+....+|+.++||.|++-|.. ..-++.|.++.+|..++....  
T Consensus       210 ~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~--  287 (1051)
T KOG0168|consen  210 KSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP--  287 (1051)
T ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc--
Confidence            45789999999876 78999999999999996 89999999999999999988865 667899999999999998532  


Q ss_pred             HHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCH-HHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhh
Q 006494          561 NEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNS-YFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMS  637 (643)
Q Consensus       561 ~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~-~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~  637 (643)
                      .+|..+|++...+.+|.=-+..+|..|+++-.|.|..-. +.-..++  .++|.|..++...+.+.-+.+.-.+..+-
T Consensus       288 ~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~--ealPlL~~lLs~~D~k~ies~~ic~~ri~  363 (1051)
T KOG0168|consen  288 KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVM--EALPLLTPLLSYQDKKPIESVCICLTRIA  363 (1051)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHH--HHHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence            467889999999999988888999999999999998622 2122222  47999999999999888877777665553

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=97.99  E-value=0.00011  Score=80.34  Aligned_cols=204  Identities=14%  Similarity=0.048  Sum_probs=143.9

Q ss_pred             hHHHHHhcCChHHHHHHHcc------CCHHHHHHHHHHHHHcccc-----ccccchhhccCChHHHHHHcccCChhhHHH
Q 006494          436 NKRHIAREGAIPAIIEILQN------GTNEARENSAAALFSLSML-----DENRVMVGNLNGIPPLVNLLRYGSIRGKKD  504 (643)
Q Consensus       436 ~k~~i~~~g~i~~Lv~lL~~------~~~~~~~~Aa~~L~~Ls~~-----~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~  504 (643)
                      +.....+...++.+++++..      +.++.+..++.-...+...     -.++..+-+.-....+.......+......
T Consensus       317 lq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aa  396 (678)
T KOG1293|consen  317 LQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAA  396 (678)
T ss_pred             hhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHH
Confidence            33333355667777777753      3444443333322222211     123344444334444444445557778888


Q ss_pred             HHHHHHHhhcCCCc-hHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC-hhhHHHHHhcCcHHHHHHHHhcCChH
Q 006494          505 AATALFNLSINQSN-KSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH-PEGRNEIGRLSFIETLVEIIKNGTPK  582 (643)
Q Consensus       505 A~~aL~nLs~~~en-~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~  582 (643)
                      |+.++.+++..-.. +..+-...+..+|++++.++...+...++++|+|++.. ..-+..+.+.|+|..+.+++.+..+.
T Consensus       397 a~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n  476 (678)
T KOG1293|consen  397 ALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFN  476 (678)
T ss_pred             HHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCch
Confidence            88888888753221 22244577899999999888888999999999999997 78899999999999999999999999


Q ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHcC-cHHHHHHHHhhCCHHHHHHHHHHHHHhhhc
Q 006494          583 NKECATSVLLELGLNNSYFILAALQYG-VYEHLVEITRCGTNRGQRKANSLLQHMSKR  639 (643)
Q Consensus       583 ~ke~A~~~L~~L~~~~~~~~~~~~~~g-~i~~L~~ll~~g~~~~k~~A~~lL~~l~~~  639 (643)
                      .+.+++++|.++.-+..+..+...... ....|..+..+.+..+++.+..+||+|...
T Consensus       477 ~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~  534 (678)
T KOG1293|consen  477 SRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN  534 (678)
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence            999999999999988766554433332 356677888999999999999999998643

>PTZ00429 beta-adaptin; Provisional

Probab=97.97  E-value=0.0034  Score=72.64  Aligned_cols=256  Identities=13%  Similarity=0.110  Sum_probs=168.2

Q ss_pred             HHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHH
Q 006494          362 EICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIA  441 (643)
Q Consensus       362 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~  441 (643)
                      ..+..++.+.+.+.+.+.-..-.+.+.++.+++.-..     ++..+.+=+.++++.++..|+++|.++-..+     ++
T Consensus        69 LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalL-----aINtl~KDl~d~Np~IRaLALRtLs~Ir~~~-----i~  138 (746)
T PTZ00429         69 LFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALL-----AVNTFLQDTTNSSPVVRALAVRTMMCIRVSS-----VL  138 (746)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHH-----HHHHHHHHcCCCCHHHHHHHHHHHHcCCcHH-----HH
Confidence            5667777888888877776666677777655543222     4567888888999999999999998864321     11


Q ss_pred             hcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHH
Q 006494          442 REGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSR  521 (643)
Q Consensus       442 ~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~  521 (643)
                      + -.++++.+.|.+.++-+|..|+-++..+-..+.  ..+...|.++.|..+|.+.++.+..+|+.+|..+....+..-.
T Consensus       139 e-~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~  215 (746)
T PTZ00429        139 E-YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE  215 (746)
T ss_pred             H-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH
Confidence            1 145667777888899999999999999854332  3344567889999999999999999999999999865443322


Q ss_pred             HHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCC-HH
Q 006494          522 AIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNN-SY  600 (643)
Q Consensus       522 iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~-~~  600 (643)
                       ...+.+..|+..|.+-++-.+-..+.+|....  +......  ...+..+...|++.++.+.-.|+.+++.+.... +.
T Consensus       216 -l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~--P~~~~e~--~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~  290 (746)
T PTZ00429        216 -SSNEWVNRLVYHLPECNEWGQLYILELLAAQR--PSDKESA--ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQE  290 (746)
T ss_pred             -HHHHHHHHHHHHhhcCChHHHHHHHHHHHhcC--CCCcHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHH
Confidence             23455666777776544434445555553321  2222211  246777777788888888888888888887542 22


Q ss_pred             HHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhh
Q 006494          601 FILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMS  637 (643)
Q Consensus       601 ~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~  637 (643)
                      ....+. ..+.++|+.| .++.+.++-.+..-|..+.
T Consensus       291 ~~~~~~-~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~  325 (746)
T PTZ00429        291 LIERCT-VRVNTALLTL-SRRDAETQYIVCKNIHALL  325 (746)
T ss_pred             HHHHHH-HHHHHHHHHh-hCCCccHHHHHHHHHHHHH
Confidence            211111 1233555555 3456667766666555543

>PHA02926 zinc finger-like protein; Provisional

Probab=97.95  E-value=5.9e-06  Score=78.67  Aligned_cols=57  Identities=14%  Similarity=0.314  Sum_probs=44.4

Q ss_pred             CCCCcccCccCcccccC---------CeecCCcccccHHhHHHHHhcC-----CCCCCCCCcccCCCCCCchh
Q 006494          268 LVPHEFLCPVTLEIMTD---------PVIVATGQTYERESIQRWLNSN-----HKTCPKTGQILDHLSLAPNY  326 (643)
Q Consensus       268 ~~p~~f~Cpi~~~~m~d---------Pv~~~~g~t~~r~~I~~w~~~~-----~~~cP~~~~~l~~~~l~pn~  326 (643)
                      ....+..|+||++...+         +++.+|||+||..||.+|....     ...||.||..+.  .++|..
T Consensus       166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~--~I~pSr  236 (242)
T PHA02926        166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR--NITMSK  236 (242)
T ss_pred             hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee--eecccc
Confidence            34577899999998754         4677999999999999999853     245999999876  355543

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.92  E-value=0.0017  Score=75.68  Aligned_cols=269  Identities=15%  Similarity=0.169  Sum_probs=169.3

Q ss_pred             HHHHHHHHhh----cCCCHHHHHHHHHHHHHhhhhChhh-HHHHHhhCChHHHHHHhcCC--CHHHHHHHHHHHHhcccC
Q 006494          361 EEICSLIQNL----SSSQLNIKRDSVMKIRMLSKENPDN-RILIANNGGIRPLVQLLSYP--DSKIQEHTVTALLNLSLD  433 (643)
Q Consensus       361 ~~i~~Lv~~L----~s~~~~~~~~Al~~L~~La~~~~~~-r~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~nLs~~  433 (643)
                      ..+|.++..+    ..++.+....++..+-.++...+.. +..+.  ..|..-..+.++.  +..++..|+..|..++..
T Consensus       202 ~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~--~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~  279 (1075)
T KOG2171|consen  202 DLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS--QIIQFSLEIAKNKELENSIRHLALEFLVSLSEY  279 (1075)
T ss_pred             HHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH--HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHh
Confidence            3455455444    4566666677777777777544433 32322  2445555555544  678899999999888866


Q ss_pred             hhhHHHHH---hcCChHHHHHHHccCCHH----------------HHHHHHHHHHHccccccccchhhccCChHHHHHHc
Q 006494          434 ETNKRHIA---REGAIPAIIEILQNGTNE----------------ARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLL  494 (643)
Q Consensus       434 ~~~k~~i~---~~g~i~~Lv~lL~~~~~~----------------~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL  494 (643)
                      ...+....   -.-.++.++.++.....+                -...|..+|-.|+..=..+.  +-+-.++.+-.++
T Consensus       280 Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~--v~p~~~~~l~~~l  357 (1075)
T KOG2171|consen  280 APAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQ--VLPPLFEALEAML  357 (1075)
T ss_pred             hHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhh--ehHHHHHHHHHHh
Confidence            32222211   122444555555321110                12334555555543221111  1122445555667


Q ss_pred             ccCChhhHHHHHHHHHHhhcCCCchHHHHh---cCcHHHHHHHhccCChhhHHHHHHHHHHHhCC--hhhHHHHHhcCcH
Q 006494          495 RYGSIRGKKDAATALFNLSINQSNKSRAIK---AGIIPSLLKLLEDKALGMVDEALSILQLLASH--PEGRNEIGRLSFI  569 (643)
Q Consensus       495 ~s~~~~~k~~A~~aL~nLs~~~en~~~iv~---~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~--~~~~~~i~~~g~i  569 (643)
                      ++.+..-++.|+.+|..++.   .+.+.+.   ..+++.++..|.++++.++-.|+.++..++.+  ++...... .-.+
T Consensus       358 ~S~~w~~R~AaL~Als~i~E---Gc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~-e~l~  433 (1075)
T KOG2171|consen  358 QSTEWKERHAALLALSVIAE---GCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHH-ERLP  433 (1075)
T ss_pred             cCCCHHHHHHHHHHHHHHHc---ccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHH-Hhcc
Confidence            88899999999888887764   3332222   45777788888889999999999999999997  45444443 3467


Q ss_pred             HHHHHHHhc-CChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHH-HHHHHHhhCCHHHHHHHHHHHHHhh
Q 006494          570 ETLVEIIKN-GTPKNKECATSVLLELGLNNSYFILAALQYGVYE-HLVEITRCGTNRGQRKANSLLQHMS  637 (643)
Q Consensus       570 ~~Lv~lL~~-~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~-~L~~ll~~g~~~~k~~A~~lL~~l~  637 (643)
                      +.|+..+.+ ++++++.+|+.+|.++....+.....=.=.+++. .|..+.+++++.+++.|+..|--..
T Consensus       434 ~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA  503 (1075)
T KOG2171|consen  434 PALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVA  503 (1075)
T ss_pred             HHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence            788888876 6789999999999998876554332222235666 6666788999999999998886553

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.91  E-value=2.9e-06  Score=85.75  Aligned_cols=70  Identities=19%  Similarity=0.330  Sum_probs=60.7

Q ss_pred             CCCCcccCccCcccccCCeecC-CcccccHHhHHHHHhcCCCCCCCCCcccCC-CCCCchhhhHHHHHHHHh
Q 006494          268 LVPHEFLCPVTLEIMTDPVIVA-TGQTYERESIQRWLNSNHKTCPKTGQILDH-LSLAPNYALRNLIVQWCE  337 (643)
Q Consensus       268 ~~p~~f~Cpi~~~~m~dPv~~~-~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~-~~l~pn~~lr~lI~~w~~  337 (643)
                      .+--+|.||||+++++..++++ |+|.||+.||-+-+..|+..||.|++.+.. ..|.++..+..+|.+...
T Consensus        39 ~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i~~  110 (381)
T KOG0311|consen   39 MFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKIYP  110 (381)
T ss_pred             HhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHHhc
Confidence            3457899999999999999885 999999999999999999999999999874 568888888888877653

>PTZ00429 beta-adaptin; Provisional

Probab=97.88  E-value=0.0037  Score=72.34  Aligned_cols=253  Identities=13%  Similarity=0.066  Sum_probs=165.6

Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHH
Q 006494          360 IEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRH  439 (643)
Q Consensus       360 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~  439 (643)
                      ++.+..|-..|.+.+...+..|++.+-.+...+.+.-.      ..+.+++++.+.|.+.+.-..-.|.+.+........
T Consensus        31 kge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~DvS~------LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelal  104 (746)
T PTZ00429         31 RGEGAELQNDLNGTDSYRKKAAVKRIIANMTMGRDVSY------LFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKAL  104 (746)
T ss_pred             cchHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCchH------HHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHH
Confidence            34566677778888888888888765433322322222      345577888899999988888888887653322222


Q ss_pred             HHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCch
Q 006494          440 IAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNK  519 (643)
Q Consensus       440 i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~  519 (643)
                      +    ++..+.+=+.+.++.+|..|..++.++-..+-     . .-.+.++.+.+.+.++-+++.|+.++..+-...+  
T Consensus       105 L----aINtl~KDl~d~Np~IRaLALRtLs~Ir~~~i-----~-e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--  172 (746)
T PTZ00429        105 L----AVNTFLQDTTNSSPVVRALAVRTMMCIRVSSV-----L-EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--  172 (746)
T ss_pred             H----HHHHHHHHcCCCCHHHHHHHHHHHHcCCcHHH-----H-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--
Confidence            2    35566677778899999999998888743111     1 1244667777888899999999999999875333  


Q ss_pred             HHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCH
Q 006494          520 SRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNS  599 (643)
Q Consensus       520 ~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~  599 (643)
                      ..+.+.|.++.|.++|.+.++.++-.|+.+|..+.......-.+ ..+.+..|+..+...++..|-..+.+|....-.+.
T Consensus       173 elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l-~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~  251 (746)
T PTZ00429        173 QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIES-SNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDK  251 (746)
T ss_pred             ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHH-HHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCc
Confidence            23446788999999999999999999999999998653222222 23556777787877788888766666644221111


Q ss_pred             HHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 006494          600 YFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHM  636 (643)
Q Consensus       600 ~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l  636 (643)
                      ...     ..++..+...+++.++-+.-.|.+++-.+
T Consensus       252 ~e~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~l  283 (746)
T PTZ00429        252 ESA-----ETLLTRVLPRMSHQNPAVVMGAIKVVANL  283 (746)
T ss_pred             HHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence            111     12444555555555555555555544433

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.88  E-value=0.0014  Score=73.23  Aligned_cols=248  Identities=19%  Similarity=0.155  Sum_probs=189.5

Q ss_pred             HHHHHHHHHhhcC--CCHHHHHHHHHHHHHhhhhCh------hhH-----------HHHHhhCChHHHHHHhcCCCHHHH
Q 006494          360 IEEICSLIQNLSS--SQLNIKRDSVMKIRMLSKENP------DNR-----------ILIANNGGIRPLVQLLSYPDSKIQ  420 (643)
Q Consensus       360 ~~~i~~Lv~~L~s--~~~~~~~~Al~~L~~La~~~~------~~r-----------~~i~~~g~i~~Lv~lL~~~~~~~~  420 (643)
                      ..+++.|++.|..  .|++...-++..+..+..+++      ..+           ..|...+.|..|+..+...|..++
T Consensus        60 a~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR  139 (970)
T KOG0946|consen   60 AQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVR  139 (970)
T ss_pred             HcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhh
Confidence            4577888888874  477888888898888876653      112           123346889999999999999999


Q ss_pred             HHHHHHHHhccc--ChhhHHHHH-hcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhc-cCChHHHHHHccc
Q 006494          421 EHTVTALLNLSL--DETNKRHIA-REGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGN-LNGIPPLVNLLRY  496 (643)
Q Consensus       421 ~~a~~~L~nLs~--~~~~k~~i~-~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~-~g~i~~Lv~lL~s  496 (643)
                      ..++..|.+|-.  ..+.+..+. ..-+|..++.+|.+....+|..+.-.|..|+.+...-.+++. .+++..|.+++..
T Consensus       140 ~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIee  219 (970)
T KOG0946|consen  140 LYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEE  219 (970)
T ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHh
Confidence            999999998754  345666555 778999999999998888999999999999988777666666 7899999999965


Q ss_pred             C----ChhhHHHHHHHHHHhhc-CCCchHHHHhcCcHHHHHHHhcc---CCh----------hhHHHHHHHHHHHhCC--
Q 006494          497 G----SIRGKKDAATALFNLSI-NQSNKSRAIKAGIIPSLLKLLED---KAL----------GMVDEALSILQLLASH--  556 (643)
Q Consensus       497 ~----~~~~k~~A~~aL~nLs~-~~en~~~iv~~G~v~~Lv~lL~~---~~~----------~~~~~Al~iL~nLa~~--  556 (643)
                      .    ..-+..+++..|.||.. +..|...+.+.+.||.|..+|..   ++.          ..+..|+.++..|+.-  
T Consensus       220 EGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~N  299 (970)
T KOG0946|consen  220 EGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGN  299 (970)
T ss_pred             cCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCC
Confidence            3    12467899999999987 66788999999999999988854   221          1245578888888763  


Q ss_pred             -----hhhHHHHHhcCcHHHHHHHHhcC--ChHHHHHHHHHHHHhccCCHHHHHHHHH
Q 006494          557 -----PEGRNEIGRLSFIETLVEIIKNG--TPKNKECATSVLLELGLNNSYFILAALQ  607 (643)
Q Consensus       557 -----~~~~~~i~~~g~i~~Lv~lL~~~--s~~~ke~A~~~L~~L~~~~~~~~~~~~~  607 (643)
                           ..++.++.+.+.+..|..++.+.  ..+++..+.-++....+++......+.+
T Consensus       300 t~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~  357 (970)
T KOG0946|consen  300 TSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFAD  357 (970)
T ss_pred             cHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhh
Confidence                 12455777788999999988664  3567777888888888887766655544

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=97.83  E-value=2.1e-05  Score=79.84  Aligned_cols=54  Identities=15%  Similarity=0.293  Sum_probs=43.0

Q ss_pred             CcccCccCccc-ccCCe----ecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCc
Q 006494          271 HEFLCPVTLEI-MTDPV----IVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAP  324 (643)
Q Consensus       271 ~~f~Cpi~~~~-m~dPv----~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~p  324 (643)
                      ++..||+|..- ...|-    +-+|||+||++||..+|..|...||.|+.++....+.|
T Consensus         2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~   60 (309)
T TIGR00570         2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRV   60 (309)
T ss_pred             CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccc
Confidence            45789999872 33443    23799999999999999888889999999998777444

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.83  E-value=0.0071  Score=63.69  Aligned_cols=238  Identities=19%  Similarity=0.214  Sum_probs=172.8

Q ss_pred             hHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhCh-----hh----HHHHHhhCChHHHHHHhcCCC------HHHHHHH
Q 006494          359 LIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENP-----DN----RILIANNGGIRPLVQLLSYPD------SKIQEHT  423 (643)
Q Consensus       359 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~-----~~----r~~i~~~g~i~~Lv~lL~~~~------~~~~~~a  423 (643)
                      +-++++.|+++|.+.+.++....+.-++.|+..+.     +.    -..+++.+.++.|+.-+..-|      .....++
T Consensus       123 eln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~  202 (536)
T KOG2734|consen  123 ELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNT  202 (536)
T ss_pred             HhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHH
Confidence            45689999999999999999999999998885432     21    233466788888888776533      3345677


Q ss_pred             HHHHHhcc-cChhhHHHHHhcCChHHHHHHHccC-C-HHHHHHHHHHHHHccccc-cccchhhccCChHHHHHHcc---c
Q 006494          424 VTALLNLS-LDETNKRHIAREGAIPAIIEILQNG-T-NEARENSAAALFSLSMLD-ENRVMVGNLNGIPPLVNLLR---Y  496 (643)
Q Consensus       424 ~~~L~nLs-~~~~~k~~i~~~g~i~~Lv~lL~~~-~-~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~---s  496 (643)
                      ...+.|+. ..+.....+++.|.+..|+.-+... . ..-+..|.-+|.-+-.+. +++...+...++..|+.-+.   .
T Consensus       203 L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~  282 (536)
T KOG2734|consen  203 LAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKR  282 (536)
T ss_pred             HHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhc
Confidence            88888886 5677888888889999988876543 2 334556666666665444 48889999999998887763   2


Q ss_pred             CC------hhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChh---hHHHHHhcC
Q 006494          497 GS------IRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPE---GRNEIGRLS  567 (643)
Q Consensus       497 ~~------~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~---~~~~i~~~g  567 (643)
                      .+      .+...+-..+|+.+...++|+.+++...+++...-+++. .....-.++.+|-....+++   ++..+++..
T Consensus       283 ~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~l  361 (536)
T KOG2734|consen  283 HDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEIL  361 (536)
T ss_pred             cCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            22      244566677788888899999999998888877767765 33456678999998888755   677788888


Q ss_pred             cHHHHHHHHh---------cCC-hHHHHHHHHHHHHhccC
Q 006494          568 FIETLVEIIK---------NGT-PKNKECATSVLLELGLN  597 (643)
Q Consensus       568 ~i~~Lv~lL~---------~~s-~~~ke~A~~~L~~L~~~  597 (643)
                      ++..+..+..         ..+ ...-++.+.+|+++-.+
T Consensus       362 GLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~  401 (536)
T KOG2734|consen  362 GLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRN  401 (536)
T ss_pred             hHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHh
Confidence            8888777654         223 34457788888887654

>TIGR02270 conserved hypothetical protein

Probab=97.82  E-value=0.0024  Score=69.10  Aligned_cols=56  Identities=14%  Similarity=0.033  Sum_probs=34.5

Q ss_pred             cHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494          568 FIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK  638 (643)
Q Consensus       568 ~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~  638 (643)
                      +++.|..+++..  .++..++.+|..+..           ..+++.|+..+.+.  ..++.|.+.++.+..
T Consensus       241 a~~~L~~ll~d~--~vr~~a~~AlG~lg~-----------p~av~~L~~~l~d~--~~aR~A~eA~~~ItG  296 (410)
T TIGR02270       241 AQAWLRELLQAA--ATRREALRAVGLVGD-----------VEAAPWCLEAMREP--PWARLAGEAFSLITG  296 (410)
T ss_pred             HHHHHHHHhcCh--hhHHHHHHHHHHcCC-----------cchHHHHHHHhcCc--HHHHHHHHHHHHhhC
Confidence            455555555442  255666666554433           34677777777643  488888888887754

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=97.82  E-value=0.0051  Score=65.73  Aligned_cols=271  Identities=16%  Similarity=0.160  Sum_probs=177.9

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCC--HHHHHHHHHHHHhcccChhhHHHH
Q 006494          363 ICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPD--SKIQEHTVTALLNLSLDETNKRHI  440 (643)
Q Consensus       363 i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~--~~~~~~a~~~L~nLs~~~~~k~~i  440 (643)
                      .+.+...+-+.+.+++..+.+.+|.+. .+...-..+.+.+.--.++..|..++  ..-+++|+..+..+....++... 
T Consensus        27 ~~~i~~~lL~~~~~vraa~yRilRy~i-~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~-  104 (371)
T PF14664_consen   27 GERIQCMLLSDSKEVRAAGYRILRYLI-SDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKE-  104 (371)
T ss_pred             HHHHHHHHCCCcHHHHHHHHHHHHHHH-cCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCccc-
Confidence            334443444556888888999999887 46666667777676667777776543  33466888877765533222222 


Q ss_pred             HhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchH
Q 006494          441 AREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKS  520 (643)
Q Consensus       441 ~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~  520 (643)
                      ...|.+..++.+....++..+..+..+|..|+..  +...+...|++..|++.+-++........+.++..+..++..|.
T Consensus       105 ~~~~vvralvaiae~~~D~lr~~cletL~El~l~--~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~  182 (371)
T PF14664_consen  105 IPRGVVRALVAIAEHEDDRLRRICLETLCELALL--NPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRK  182 (371)
T ss_pred             CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhh--CHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhh
Confidence            2567888999999888889999999999999863  34456778999999999988876777778889999998888888


Q ss_pred             HHHhcCcHHHHHHHhccC-------Ch--hhHHHHHHHHHHHhCChhhHHHHHhc--CcHHHHHHHHhcCChHHHHHHHH
Q 006494          521 RAIKAGIIPSLLKLLEDK-------AL--GMVDEALSILQLLASHPEGRNEIGRL--SFIETLVEIIKNGTPKNKECATS  589 (643)
Q Consensus       521 ~iv~~G~v~~Lv~lL~~~-------~~--~~~~~Al~iL~nLa~~~~~~~~i~~~--g~i~~Lv~lL~~~s~~~ke~A~~  589 (643)
                      .+...--+..++.-+.+.       +.  +....+..++..+-.+-.|--.+...  .++..|+..|.-.+++.|+..+.
T Consensus       183 yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ild  262 (371)
T PF14664_consen  183 YLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILD  262 (371)
T ss_pred             hhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHH
Confidence            766544455555554432       11  22333333343333332222222222  35666666666666666666665


Q ss_pred             HHHHhccCC----------------H--------------------------------HH----HHHHHHcCcHHHHHHH
Q 006494          590 VLLELGLNN----------------S--------------------------------YF----ILAALQYGVYEHLVEI  617 (643)
Q Consensus       590 ~L~~L~~~~----------------~--------------------------------~~----~~~~~~~g~i~~L~~l  617 (643)
                      +|..+-.-.                +                                .+    .....+.|.++.|+++
T Consensus       263 ll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~L~~l  342 (371)
T PF14664_consen  263 LLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEALVEL  342 (371)
T ss_pred             HHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcChHHHHHHH
Confidence            555443210                0                                01    1224579999999999


Q ss_pred             HhhC-CHHHHHHHHHHHHHhh
Q 006494          618 TRCG-TNRGQRKANSLLQHMS  637 (643)
Q Consensus       618 l~~g-~~~~k~~A~~lL~~l~  637 (643)
                      +.+. ++..++||.-+|..+-
T Consensus       343 i~~~~d~~l~~KAtlLL~elL  363 (371)
T PF14664_consen  343 IESSEDSSLSRKATLLLGELL  363 (371)
T ss_pred             HhcCCCchHHHHHHHHHHHHH
Confidence            9887 7888999999988653

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=97.73  E-value=0.0047  Score=66.01  Aligned_cols=252  Identities=15%  Similarity=0.110  Sum_probs=172.7

Q ss_pred             HHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHHHHccC--CHHHH
Q 006494          384 KIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNG--TNEAR  461 (643)
Q Consensus       384 ~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~--~~~~~  461 (643)
                      .+..+.+.++..|..+.-....+.+..++-+++.+++..+.+++..+..++..-..+.+.+.--.++.-|...  +..-|
T Consensus         6 ~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER   85 (371)
T PF14664_consen    6 DLVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVER   85 (371)
T ss_pred             HHHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHH
Confidence            3444445566555555444444555544444458999999999999999988888888777666666777543  46678


Q ss_pred             HHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCChh
Q 006494          462 ENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALG  541 (643)
Q Consensus       462 ~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~~  541 (643)
                      ++|...+..+......... ...|.+..++.+..+.+++.+..|+.+|..|+..  +-..++.+|++..|++.+.++...
T Consensus        86 ~QALkliR~~l~~~~~~~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~--~P~lv~~~gG~~~L~~~l~d~~~~  162 (371)
T PF14664_consen   86 EQALKLIRAFLEIKKGPKE-IPRGVVRALVAIAEHEDDRLRRICLETLCELALL--NPELVAECGGIRVLLRALIDGSFS  162 (371)
T ss_pred             HHHHHHHHHHHHhcCCccc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhh--CHHHHHHcCCHHHHHHHHHhccHh
Confidence            8999988887654433222 2467889999999998899999999999999874  345566899999999999886666


Q ss_pred             hHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcC-------Ch--HHHHHHHHHHHHhccCCHHHHHHHHH-cCcH
Q 006494          542 MVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNG-------TP--KNKECATSVLLELGLNNSYFILAALQ-YGVY  611 (643)
Q Consensus       542 ~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~-------s~--~~ke~A~~~L~~L~~~~~~~~~~~~~-~g~i  611 (643)
                      ..+..+.++..+-.+|..|..+...--+..+..-+.+.       +.  .--..+..++..+-+.=++......+ ...+
T Consensus       163 ~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~l  242 (371)
T PF14664_consen  163 ISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGL  242 (371)
T ss_pred             HHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHH
Confidence            88889999999999999998776533344443333221       11  11223444444444433332222222 2568


Q ss_pred             HHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494          612 EHLVEITRCGTNRGQRKANSLLQHMSK  638 (643)
Q Consensus       612 ~~L~~ll~~g~~~~k~~A~~lL~~l~~  638 (643)
                      ..|+..+...++++++....++--+-+
T Consensus       243 ksLv~~L~~p~~~ir~~Ildll~dllr  269 (371)
T PF14664_consen  243 KSLVDSLRLPNPEIRKAILDLLFDLLR  269 (371)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHC
Confidence            889999988899999888888776654

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.72  E-value=1.7e-05  Score=77.41  Aligned_cols=52  Identities=15%  Similarity=0.273  Sum_probs=46.1

Q ss_pred             CCcccCccCcccccCCeecCCcccccHHhHHH-HHhcCCCCCCCCCcccCCCC
Q 006494          270 PHEFLCPVTLEIMTDPVIVATGQTYERESIQR-WLNSNHKTCPKTGQILDHLS  321 (643)
Q Consensus       270 p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~-w~~~~~~~cP~~~~~l~~~~  321 (643)
                      -.+|.|+||.+.+.+|+-++|||.||-+||-. |-......||.||+......
T Consensus       213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~  265 (271)
T COG5574         213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK  265 (271)
T ss_pred             ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence            37899999999999999999999999999999 88876677999998765443

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=97.72  E-value=0.00098  Score=74.80  Aligned_cols=55  Identities=20%  Similarity=0.361  Sum_probs=49.9

Q ss_pred             CcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCch
Q 006494          271 HEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPN  325 (643)
Q Consensus       271 ~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn  325 (643)
                      +-.+||.|..-.+|-||+.|||.||-.||+..+....+.||.|+..+...++.|-
T Consensus       642 ~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~I  696 (698)
T KOG0978|consen  642 ELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHRI  696 (698)
T ss_pred             hceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccccccc
Confidence            4578999999999999999999999999999999888999999999987776654

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.68  E-value=0.007  Score=70.67  Aligned_cols=260  Identities=17%  Similarity=0.214  Sum_probs=177.7

Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcC-CCHHHHHHHHHHHHhcc------cC
Q 006494          361 EEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSY-PDSKIQEHTVTALLNLS------LD  433 (643)
Q Consensus       361 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~nLs------~~  433 (643)
                      ..+..|++.|.+.|.+++..|-+.+..+++..+          ..+.|..++.. .|++++.-|+-.++.|.      .+
T Consensus         4 ~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~----------~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~   73 (1075)
T KOG2171|consen    4 APLEQLLQQLLSPDNEVRRQAEEALETLAKTEP----------LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLS   73 (1075)
T ss_pred             hHHHHHHHHhcCCCchHHHHHHHHHHHhhcccc----------hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCC
Confidence            467788999999999999999999998885432          56778888865 47888877776666653      34


Q ss_pred             hhhHHHHHhcCChHHHHHH-HccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHh
Q 006494          434 ETNKRHIAREGAIPAIIEI-LQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNL  512 (643)
Q Consensus       434 ~~~k~~i~~~g~i~~Lv~l-L~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nL  512 (643)
                      .+.+.+|...     |+.. .+...+.+|..-+.++..++...---   ...+.++.|++..++.++..++.|+.+|+++
T Consensus        74 ~e~~~siks~-----lL~~~~~E~~~~vr~k~~dviAeia~~~l~e---~WPell~~L~q~~~S~~~~~rE~al~il~s~  145 (1075)
T KOG2171|consen   74 AEVQQSIKSS-----LLEIIQSETEPSVRHKLADVIAEIARNDLPE---KWPELLQFLFQSTKSPNPSLRESALLILSSL  145 (1075)
T ss_pred             HHHHHHHHHH-----HHHHHHhccchHHHHHHHHHHHHHHHhcccc---chHHHHHHHHHHhcCCCcchhHHHHHHHHhh
Confidence            5666666432     3333 34556778888888888887543221   5578889999999999999999999999999


Q ss_pred             hcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChh-hHHHHHh-cCcHHHHHHHHh----cCChHHHHH
Q 006494          513 SINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPE-GRNEIGR-LSFIETLVEIIK----NGTPKNKEC  586 (643)
Q Consensus       513 s~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~-~~~~i~~-~g~i~~Lv~lL~----~~s~~~ke~  586 (643)
                      ...-++...=-=....+.+.+.+.+++..++-.|+.++...+...+ .....-. ...+|.++..+.    .++.+.-..
T Consensus       146 ~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~  225 (1075)
T KOG2171|consen  146 PETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKS  225 (1075)
T ss_pred             hhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHH
Confidence            8755443221111234455555666555588888888887776542 2222222 245666666554    455555667


Q ss_pred             HHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhC--CHHHHHHHHHHHHHhhhc
Q 006494          587 ATSVLLELGLNNSYFILAALQYGVYEHLVEITRCG--TNRGQRKANSLLQHMSKR  639 (643)
Q Consensus       587 A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g--~~~~k~~A~~lL~~l~~~  639 (643)
                      ++.+|..+....+......+. .++..-..+..+.  ++.+|..|.++|-.+.++
T Consensus       226 ~l~~l~El~e~~pk~l~~~l~-~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~  279 (1075)
T KOG2171|consen  226 ALEALIELLESEPKLLRPHLS-QIIQFSLEIAKNKELENSIRHLALEFLVSLSEY  279 (1075)
T ss_pred             HHHHHHHHHhhchHHHHHHHH-HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHh
Confidence            788888888887776554433 3555666666555  678899999888877664

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.67  E-value=4.3e-05  Score=61.59  Aligned_cols=39  Identities=31%  Similarity=0.694  Sum_probs=32.0

Q ss_pred             CccCcccccCC-------------eecCCcccccHHhHHHHHhcCCCCCCCCC
Q 006494          275 CPVTLEIMTDP-------------VIVATGQTYERESIQRWLNSNHKTCPKTG  314 (643)
Q Consensus       275 Cpi~~~~m~dP-------------v~~~~g~t~~r~~I~~w~~~~~~~cP~~~  314 (643)
                      |+||++-+.||             +..+|||.|...||.+|+.. +.+||+||
T Consensus        22 C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR   73 (73)
T PF12678_consen   22 CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ-NNTCPLCR   73 (73)
T ss_dssp             ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT-SSB-TTSS
T ss_pred             ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc-CCcCCCCC
Confidence            99999999544             33579999999999999987 45999996

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=97.66  E-value=7.1e-05  Score=77.68  Aligned_cols=52  Identities=21%  Similarity=0.464  Sum_probs=46.5

Q ss_pred             ccCccCcccccCCeecC-CcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCch
Q 006494          273 FLCPVTLEIMTDPVIVA-TGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPN  325 (643)
Q Consensus       273 f~Cpi~~~~m~dPv~~~-~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn  325 (643)
                      +.|.|++++-.+||+-+ +||.|+|+-|++++.. +.+||+|+++|..++++|-
T Consensus         1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e-~G~DPIt~~pLs~eelV~I   53 (506)
T KOG0289|consen    1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAE-TGKDPITNEPLSIEELVEI   53 (506)
T ss_pred             CeecccCCCCCCccccccccchHHHHHHHHHHHH-cCCCCCCCCcCCHHHeeec
Confidence            46999999999999975 9999999999999998 5799999999998777654

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.66  E-value=3.9e-05  Score=81.67  Aligned_cols=72  Identities=19%  Similarity=0.336  Sum_probs=58.3

Q ss_pred             CcccCccCcccccCCeecCCcccccHHhHHHHHhcC----CCCCCCCCcccCCCCCCch----hhhHHHHHHHHhhcccc
Q 006494          271 HEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSN----HKTCPKTGQILDHLSLAPN----YALRNLIVQWCEKNNVE  342 (643)
Q Consensus       271 ~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~----~~~cP~~~~~l~~~~l~pn----~~lr~lI~~w~~~~~~~  342 (643)
                      .+..||||++--.=|+.+.|||.||-.||-++|..+    ...||+|+..+...++.|-    ..-+.-+...+..||.+
T Consensus       185 t~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~qkke~l~~~~~~ng~~  264 (513)
T KOG2164|consen  185 TDMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDDQKKEELKLHQDPNGIP  264 (513)
T ss_pred             cCCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccccccHHHHHHhcccCCC
Confidence            388999999999999999999999999999999854    4569999999887777663    33344467777778843

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=97.66  E-value=3.5e-05  Score=55.51  Aligned_cols=41  Identities=15%  Similarity=0.446  Sum_probs=35.0

Q ss_pred             cCccCcccc---cCCeecCCcccccHHhHHHHHhcCCCCCCCCCc
Q 006494          274 LCPVTLEIM---TDPVIVATGQTYERESIQRWLNSNHKTCPKTGQ  315 (643)
Q Consensus       274 ~Cpi~~~~m---~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~  315 (643)
                      .||+|.+.+   ..|++++|||+||..|+.++. .....||+|++
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence            389999888   358889999999999999999 44678999974

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=97.64  E-value=0.0022  Score=67.20  Aligned_cols=222  Identities=15%  Similarity=0.155  Sum_probs=159.2

Q ss_pred             CCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcC--CCHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHH
Q 006494          373 SQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSY--PDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAII  450 (643)
Q Consensus       373 ~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~--~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv  450 (643)
                      .+.+-..-+++.|..+.+ -++.|..++.++++..++..+.+  .+..+|.+.+-+++-|+.++...+.+..-+.|+.|.
T Consensus       169 ~~~~~~~~~~rcLQ~ll~-~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~  247 (442)
T KOG2759|consen  169 TNNDYIQFAARCLQTLLR-VDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLS  247 (442)
T ss_pred             CCCchHHHHHHHHHHHhc-CcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHH
Confidence            566677788889998884 57899999999999999998843  378899999999999999998888887788999999


Q ss_pred             HHHccCC-HHHHHHHHHHHHHcccccc---ccc----hhhccCChHHHHHHcccC---ChhhHHHH-------HHHHHHh
Q 006494          451 EILQNGT-NEARENSAAALFSLSMLDE---NRV----MVGNLNGIPPLVNLLRYG---SIRGKKDA-------ATALFNL  512 (643)
Q Consensus       451 ~lL~~~~-~~~~~~Aa~~L~~Ls~~~~---~k~----~i~~~g~i~~Lv~lL~s~---~~~~k~~A-------~~aL~nL  512 (643)
                      ++++... ..+-....+++.|+.....   .+.    .+.. +.++.-++.|..+   +++...+-       -.-...|
T Consensus       248 ~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~-~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~L  326 (442)
T KOG2759|consen  248 DIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVL-CKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDL  326 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHh-cCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhh
Confidence            9998753 4455567888888864331   222    3333 4445555555433   22222111       1112223


Q ss_pred             hcC---------------C---------CchHHHHh--cCcHHHHHHHhcc-CChhhHHHHHHHHHHHhCC-hhhHHHHH
Q 006494          513 SIN---------------Q---------SNKSRAIK--AGIIPSLLKLLED-KALGMVDEALSILQLLASH-PEGRNEIG  564 (643)
Q Consensus       513 s~~---------------~---------en~~~iv~--~G~v~~Lv~lL~~-~~~~~~~~Al~iL~nLa~~-~~~~~~i~  564 (643)
                      |+.               |         +|..++-+  -..+..|+.+|.. .++.+.--|+.=+.....+ |+|+..+.
T Consensus       327 sSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~  406 (442)
T KOG2759|consen  327 SSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVE  406 (442)
T ss_pred             ccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHH
Confidence            332               2         23344444  3478889999976 4466666677777777776 99999999


Q ss_pred             hcCcHHHHHHHHhcCChHHHHHHHHHHHHhcc
Q 006494          565 RLSFIETLVEIIKNGTPKNKECATSVLLELGL  596 (643)
Q Consensus       565 ~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~  596 (643)
                      ..|+=..++++|...++++|-+|+.++-.|-.
T Consensus       407 k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~  438 (442)
T KOG2759|consen  407 KYGGKERVMNLLNHEDPEVRYHALLAVQKLMV  438 (442)
T ss_pred             HhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence            99999999999999999999999998876654

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.64  E-value=0.0044  Score=62.52  Aligned_cols=232  Identities=16%  Similarity=0.179  Sum_probs=156.3

Q ss_pred             hHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHH
Q 006494          359 LIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKR  438 (643)
Q Consensus       359 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~  438 (643)
                      +...++.+.++++...+  ...|+..+.+++ .++..|+.+... .+..++..+..+.+..-...+.+|.||+.++....
T Consensus        42 ~~~~lk~l~qL~~~~~~--~~~a~~alVnls-q~~~l~~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~  117 (353)
T KOG2973|consen   42 SEALLKDLTQLLKDLDP--AEPAATALVNLS-QKEELRKKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVA  117 (353)
T ss_pred             hhhhHHHHHHHccCccc--ccHHHHHHHHHH-hhHHHHHHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHH
Confidence            45677778888876555  566788899998 567777777665 77888888877767777888999999998876655


Q ss_pred             HHH---h----cCChHHHHHHHccC-CH-HHHHHHHHHHHHccccccccchhhccCCh--HHHHHHcccCChhhH-HHHH
Q 006494          439 HIA---R----EGAIPAIIEILQNG-TN-EARENSAAALFSLSMLDENRVMVGNLNGI--PPLVNLLRYGSIRGK-KDAA  506 (643)
Q Consensus       439 ~i~---~----~g~i~~Lv~lL~~~-~~-~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i--~~Lv~lL~s~~~~~k-~~A~  506 (643)
                      .+.   .    .|.+.....+...+ +. .--..-|.++.+|+.....|..+.....+  ..|+.+ .+.+..++ ...+
T Consensus       118 ~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~~~~gR~l~~~~k~~p~~kll~f-t~~~s~vRr~Gva  196 (353)
T KOG2973|consen  118 ALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQFEAGRKLLLEPKRFPDQKLLPF-TSEDSQVRRGGVA  196 (353)
T ss_pred             HHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHhhhhhhhhHhcchhhhhHhhhhcc-cccchhhhccchH
Confidence            443   2    44555555555443 21 23456788889999999998888886633  233333 33333343 4567


Q ss_pred             HHHHHhhcCCCchHHHHhc--CcHHHH---------------------HHHhcc-----CChhhHHHHHHHHHHHhCChh
Q 006494          507 TALFNLSINQSNKSRAIKA--GIIPSL---------------------LKLLED-----KALGMVDEALSILQLLASHPE  558 (643)
Q Consensus       507 ~aL~nLs~~~en~~~iv~~--G~v~~L---------------------v~lL~~-----~~~~~~~~Al~iL~nLa~~~~  558 (643)
                      .+|.|.|....++..++..  ..+|.|                     +++|..     +++.+...-+.+|..||....
T Consensus       197 gtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~  276 (353)
T KOG2973|consen  197 GTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRA  276 (353)
T ss_pred             HHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhH
Confidence            8999999988888777652  234443                     344431     345677778999999999999


Q ss_pred             hHHHHHhcCcHHHHHHHHhc--CChHHHHHHHHHHHHhcc
Q 006494          559 GRNEIGRLSFIETLVEIIKN--GTPKNKECATSVLLELGL  596 (643)
Q Consensus       559 ~~~~i~~~g~i~~Lv~lL~~--~s~~~ke~A~~~L~~L~~  596 (643)
                      ||+.+.+.|+-+. ++-++.  .+++.++.+-.+.-.|-.
T Consensus       277 GRe~lR~kgvYpi-lRElhk~e~ded~~~ace~vvq~Lv~  315 (353)
T KOG2973|consen  277 GREVLRSKGVYPI-LRELHKWEEDEDIREACEQVVQMLVR  315 (353)
T ss_pred             hHHHHHhcCchHH-HHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence            9999988765554 455554  345555555555444444

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=97.59  E-value=9.4e-05  Score=52.37  Aligned_cols=40  Identities=50%  Similarity=0.761  Sum_probs=37.8

Q ss_pred             ChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcc
Q 006494          392 NPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLS  431 (643)
Q Consensus       392 ~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs  431 (643)
                      +++++..+.+.|+++.|+.+|++.+.++++.|+++|.||+
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            4678999999999999999999999999999999999986

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=97.59  E-value=0.0092  Score=68.46  Aligned_cols=256  Identities=16%  Similarity=0.185  Sum_probs=168.6

Q ss_pred             HHHHHHHhhc-CCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHH
Q 006494          362 EICSLIQNLS-SSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHI  440 (643)
Q Consensus       362 ~i~~Lv~~L~-s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i  440 (643)
                      ..+.++..|. .+++.++.-|+..+..++ .+.+.-..+++.|.+..|+.+|.+ -+..++.++.+|..|+.+.+....-
T Consensus      1772 ~F~l~~~~lr~~~~~~iq~LaL~Vi~~~T-an~~Cv~~~a~~~vL~~LL~lLHS-~PS~R~~vL~vLYAL~S~~~i~keA 1849 (2235)
T KOG1789|consen 1772 NFPLLITYLRCRKHPKLQILALQVILLAT-ANKECVTDLATCNVLTTLLTLLHS-QPSMRARVLDVLYALSSNGQIGKEA 1849 (2235)
T ss_pred             ccHHHHHHHHHcCCchHHHHHHHHHHHHh-cccHHHHHHHhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHhcCcHHHHHH
Confidence            3344444443 356677777888777766 444555556778888888998877 4888999999999999998887777


Q ss_pred             HhcCChHHHHHHHcc-CCHHHHHHHHHHHHHcccccc--ccchh--hc----------cCChHHHHHHccc---------
Q 006494          441 AREGAIPAIIEILQN-GTNEARENSAAALFSLSMLDE--NRVMV--GN----------LNGIPPLVNLLRY---------  496 (643)
Q Consensus       441 ~~~g~i~~Lv~lL~~-~~~~~~~~Aa~~L~~Ls~~~~--~k~~i--~~----------~g~i~~Lv~lL~s---------  496 (643)
                      .+.|++.-|..++-. .++..|.+||..+..|..+.-  -|..|  ..          .+.-.+.++++..         
T Consensus      1850 ~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiW 1929 (2235)
T KOG1789|consen 1850 LEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIW 1929 (2235)
T ss_pred             HhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCccccc
Confidence            788999888888865 467888888888887753321  11111  00          0111222222210         


Q ss_pred             --------------------------------------------------------------------------------
Q 006494          497 --------------------------------------------------------------------------------  496 (643)
Q Consensus       497 --------------------------------------------------------------------------------  496 (643)
                                                                                                      
T Consensus      1930 n~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~l 2009 (2235)
T KOG1789|consen 1930 NEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVL 2009 (2235)
T ss_pred             CHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHH
Confidence                                                                                            


Q ss_pred             -----CCh--hhHHHHHHHHHHhhcCCCc-hHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCc
Q 006494          497 -----GSI--RGKKDAATALFNLSINQSN-KSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSF  568 (643)
Q Consensus       497 -----~~~--~~k~~A~~aL~nLs~~~en-~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~  568 (643)
                           .++  .....-..|+..|.+.+++ ...+-..|.+|.++..+...+...-..|+.+|..|+.+.-+..+++...+
T Consensus      2010 elm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~C~~AMA~l~~ 2089 (2235)
T KOG1789|consen 2010 ELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQFCCDAMAQLPC 2089 (2235)
T ss_pred             HHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhccHHHHHHhcccc
Confidence                 000  0000111122233332222 33444578888888888766666667899999999999999999999888


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHhccCCH-HHHHHHHHcCcHHHHHHHHhh
Q 006494          569 IETLVEIIKNGTPKNKECATSVLLELGLNNS-YFILAALQYGVYEHLVEITRC  620 (643)
Q Consensus       569 i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~-~~~~~~~~~g~i~~L~~ll~~  620 (643)
                      +..++..++..- ..-..|+.+|..+...+. +.....++.|.+|.|+.++..
T Consensus      2090 i~~~m~~mkK~~-~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~ 2141 (2235)
T KOG1789|consen 2090 IDGIMKSMKKQP-SLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDS 2141 (2235)
T ss_pred             chhhHHHHHhcc-hHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhcc
Confidence            888888887533 333478888888776543 444557789999999999874

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=97.54  E-value=9e-05  Score=52.48  Aligned_cols=40  Identities=35%  Similarity=0.423  Sum_probs=37.4

Q ss_pred             CCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhC
Q 006494          516 QSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLAS  555 (643)
Q Consensus       516 ~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~  555 (643)
                      ++++..+++.|++|+|+++|.+.+..+++.|+++|.||+.
T Consensus         2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            5688999999999999999999999999999999999974

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=97.53  E-value=0.00095  Score=70.24  Aligned_cols=182  Identities=17%  Similarity=0.169  Sum_probs=143.4

Q ss_pred             hHHHHHhhCChHHHHHHhcCCCHHH--HHHHHHHHHhcccChhhHHHHHhcCChHHHHHHHcc-CCHHHHHHHHHHHHHc
Q 006494          395 NRILIANNGGIRPLVQLLSYPDSKI--QEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQN-GTNEARENSAAALFSL  471 (643)
Q Consensus       395 ~r~~i~~~g~i~~Lv~lL~~~~~~~--~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~-~~~~~~~~Aa~~L~~L  471 (643)
                      ....+...|++..|++++..++.++  +..|...|.. ....+|+..++..| +..++.+-+. ..++.....+++|.++
T Consensus       172 LCD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq-~~~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m  249 (832)
T KOG3678|consen  172 LCDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQ-ILVAENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM  249 (832)
T ss_pred             hhhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHH-HHhhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence            3556677899999999999987766  5667777765 34567888888776 6666666654 4677777889999988


Q ss_pred             cc-cccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCC--CchHHHHhcCcHHHHHHHhccCChhhHHHHHH
Q 006494          472 SM-LDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQ--SNKSRAIKAGIIPSLLKLLEDKALGMVDEALS  548 (643)
Q Consensus       472 s~-~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~--en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~  548 (643)
                      -. .++....+++.|++..++-..+..++...++++.+|.|.+.+.  +.+.+|++..+..-|+-+-.+.+.-+.-.|+-
T Consensus       250 FKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~ACl  329 (832)
T KOG3678|consen  250 FKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACL  329 (832)
T ss_pred             hhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHH
Confidence            54 4457888999999999988888888999999999999988754  45889999999888988887777777888999


Q ss_pred             HHHHHhCChhhHHHHHhcCcHHHHHHHHhc
Q 006494          549 ILQLLASHPEGRNEIGRLSFIETLVEIIKN  578 (643)
Q Consensus       549 iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~  578 (643)
                      +.+.|+.+.+.-..+...|.+..+-.++.+
T Consensus       330 AV~vlat~KE~E~~VrkS~TlaLVEPlva~  359 (832)
T KOG3678|consen  330 AVAVLATNKEVEREVRKSGTLALVEPLVAS  359 (832)
T ss_pred             HHhhhhhhhhhhHHHhhccchhhhhhhhhc
Confidence            999999998877777777766555555544

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=97.50  E-value=0.0017  Score=69.56  Aligned_cols=258  Identities=17%  Similarity=0.183  Sum_probs=179.0

Q ss_pred             HHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccC-hhhHHHHHhcCChHHHHHHHccCCH
Q 006494          380 DSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLD-ETNKRHIAREGAIPAIIEILQNGTN  458 (643)
Q Consensus       380 ~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~k~~i~~~g~i~~Lv~lL~~~~~  458 (643)
                      .++..|..+++.-...|.-+.++..++.|+.+|+.++..+.--+...++|+... +.-+..+...|+|..|+.++.+.+.
T Consensus       408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDd  487 (743)
T COG5369         408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDD  487 (743)
T ss_pred             HHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchh
Confidence            345667777766566677888889999999999987666666677788887644 5567778899999999999998888


Q ss_pred             HHHHHHHHHHHHccccccc--cchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcC-CC---chHHHHhcC----cH
Q 006494          459 EARENSAAALFSLSMLDEN--RVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSIN-QS---NKSRAIKAG----II  528 (643)
Q Consensus       459 ~~~~~Aa~~L~~Ls~~~~~--k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~-~e---n~~~iv~~G----~v  528 (643)
                      ..|.++.+++..+....++  +-+....-++..++++..+..-.++...+-.|.|+..+ ..   .+.-++.+.    ..
T Consensus       488 aLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylf  567 (743)
T COG5369         488 ALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLF  567 (743)
T ss_pred             hhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHH
Confidence            9999999999999876654  44555667889999999988889999999999998752 22   233222222    34


Q ss_pred             HHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHH-Hhc-CcHHHHHHHHhc---------CC-------h---------
Q 006494          529 PSLLKLLEDKALGMVDEALSILQLLASHPEGRNEI-GRL-SFIETLVEIIKN---------GT-------P---------  581 (643)
Q Consensus       529 ~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i-~~~-g~i~~Lv~lL~~---------~s-------~---------  581 (643)
                      ..|++.+...++-..+..+.+|.+++...+....+ .+. ..+..+.++|..         |+       |         
T Consensus       568 k~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~  647 (743)
T COG5369         568 KRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLS  647 (743)
T ss_pred             HHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeeccc
Confidence            44556666667766777788888888775544443 332 344444444420         00       0         


Q ss_pred             -------------------------HHHHHH---HHHHHHhc---------cCCHHHHHHHHHcCcHHHHHHHHhhCCHH
Q 006494          582 -------------------------KNKECA---TSVLLELG---------LNNSYFILAALQYGVYEHLVEITRCGTNR  624 (643)
Q Consensus       582 -------------------------~~ke~A---~~~L~~L~---------~~~~~~~~~~~~~g~i~~L~~ll~~g~~~  624 (643)
                                               +.-|-.   .++..++.         ....++++.+.+.|.-..|+.+....++.
T Consensus       648 e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl~  727 (743)
T COG5369         648 ENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDSLI  727 (743)
T ss_pred             ccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCcHH
Confidence                                     000111   11111111         01126777788899999999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 006494          625 GQRKANSLLQHMS  637 (643)
Q Consensus       625 ~k~~A~~lL~~l~  637 (643)
                      +++++..+|.+|+
T Consensus       728 vrek~~taL~~l~  740 (743)
T COG5369         728 VREKIGTALENLR  740 (743)
T ss_pred             HHHHHHHHHHhhh
Confidence            9999999999875

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.50  E-value=0.0097  Score=65.45  Aligned_cols=256  Identities=15%  Similarity=0.178  Sum_probs=166.4

Q ss_pred             HHHHHHhhhhChhhHHHHHhhCChHHHHHHh----------cCCCHHHHHHHHHHHHhccc-ChhhHHHHHhcCChHHHH
Q 006494          382 VMKIRMLSKENPDNRILIANNGGIRPLVQLL----------SYPDSKIQEHTVTALLNLSL-DETNKRHIAREGAIPAII  450 (643)
Q Consensus       382 l~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL----------~~~~~~~~~~a~~~L~nLs~-~~~~k~~i~~~g~i~~Lv  450 (643)
                      +..|+.++ +++.+-..+....++..|.++-          ...++.+...|+++|.|+-. ++..+..+++.|+.+.++
T Consensus         2 L~~LRiLs-Rd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~   80 (446)
T PF10165_consen    2 LETLRILS-RDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC   80 (446)
T ss_pred             HHHHHHHc-cCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence            55677777 4555666665555666666654          23478899999999999764 566777778999999999


Q ss_pred             HHHccC-----CHHHHHHHHHHHHHccc-cccccchhhc-cCChHHHHHHcccC-----------------ChhhHHHHH
Q 006494          451 EILQNG-----TNEARENSAAALFSLSM-LDENRVMVGN-LNGIPPLVNLLRYG-----------------SIRGKKDAA  506 (643)
Q Consensus       451 ~lL~~~-----~~~~~~~Aa~~L~~Ls~-~~~~k~~i~~-~g~i~~Lv~lL~s~-----------------~~~~k~~A~  506 (643)
                      +.|+..     +.+..-....+||-++. ..+.+..+.+ .+++..++..|...                 .......++
T Consensus        81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiL  160 (446)
T PF10165_consen   81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEIL  160 (446)
T ss_pred             HHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHH
Confidence            999986     67888889999998874 4456666665 57777777665310                 223456788


Q ss_pred             HHHHHhhcCCCchHHHHhcCcHHHHHHHhcc---------CChhhHHHHHHHHHHHhCC-hhh-------HHH----HHh
Q 006494          507 TALFNLSINQSNKSRAIKAGIIPSLLKLLED---------KALGMVDEALSILQLLASH-PEG-------RNE----IGR  565 (643)
Q Consensus       507 ~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~---------~~~~~~~~Al~iL~nLa~~-~~~-------~~~----i~~  565 (643)
                      .+++|+..+......--..+.++.|+.++..         +.......++.+|.|+--. ...       ...    ...
T Consensus       161 KllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~  240 (446)
T PF10165_consen  161 KLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDN  240 (446)
T ss_pred             HHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCC
Confidence            9999998754443322234556666555432         1224566677777776211 000       000    112


Q ss_pred             cCcHHHHHHHHhc----CC----hHHHHHHHHHHHHhccCCHHHHHHHH----------------HcCcHHHHHHHHhhC
Q 006494          566 LSFIETLVEIIKN----GT----PKNKECATSVLLELGLNNSYFILAAL----------------QYGVYEHLVEITRCG  621 (643)
Q Consensus       566 ~g~i~~Lv~lL~~----~s----~~~ke~A~~~L~~L~~~~~~~~~~~~----------------~~g~i~~L~~ll~~g  621 (643)
                      ...+..|+.+|..    ..    .+.-.--+.+|..+|..+...+..+.                ...+-..|++++.+.
T Consensus       241 ~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~  320 (446)
T PF10165_consen  241 MDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP  320 (446)
T ss_pred             hHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC
Confidence            2457777777753    11    12223445677777776544333332                235688899999998


Q ss_pred             CHHHHHHHHHHHHHhhh
Q 006494          622 TNRGQRKANSLLQHMSK  638 (643)
Q Consensus       622 ~~~~k~~A~~lL~~l~~  638 (643)
                      .+..|..+..+|..||+
T Consensus       321 ~~~~k~~vaellf~Lc~  337 (446)
T PF10165_consen  321 DPQLKDAVAELLFVLCK  337 (446)
T ss_pred             CchHHHHHHHHHHHHHh
Confidence            89999999999999986

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=97.49  E-value=6.9e-05  Score=80.58  Aligned_cols=67  Identities=25%  Similarity=0.526  Sum_probs=57.2

Q ss_pred             CCCCcccCccCcccccCCeec-CCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCc-hhhhHHHHHHH
Q 006494          268 LVPHEFLCPVTLEIMTDPVIV-ATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAP-NYALRNLIVQW  335 (643)
Q Consensus       268 ~~p~~f~Cpi~~~~m~dPv~~-~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~p-n~~lr~lI~~w  335 (643)
                      .++++..||+|..++.||+.+ .|||.||+.||..|+.. +..||.++..+......| ...++..+..|
T Consensus        17 ~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l   85 (391)
T KOG0297|consen   17 PLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELLKL   85 (391)
T ss_pred             CCcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHHhc
Confidence            367889999999999999994 99999999999999998 889999998887766665 45666666665

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.49  E-value=0.0007  Score=67.55  Aligned_cols=181  Identities=16%  Similarity=0.082  Sum_probs=116.9

Q ss_pred             ccCCHHHHHHHHHHHHHccccc---cccchhhc--cCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHHHhcCcH
Q 006494          454 QNGTNEARENSAAALFSLSMLD---ENRVMVGN--LNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGII  528 (643)
Q Consensus       454 ~~~~~~~~~~Aa~~L~~Ls~~~---~~k~~i~~--~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v  528 (643)
                      .+.+++.|..|...|..+....   .....+..  ...+..++..+.+....+.+.|+.++..|+..-...-.-.-...+
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l   96 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL   96 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence            4568899998988888886544   23333322  245567777777777788899999999998754444333345688


Q ss_pred             HHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCc-HHHHHHHHhcCChHHHHHHHHHHHHhccCCH---HHHHH
Q 006494          529 PSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSF-IETLVEIIKNGTPKNKECATSVLLELGLNNS---YFILA  604 (643)
Q Consensus       529 ~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~-i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~---~~~~~  604 (643)
                      |.|++.+.+++..+.+.|..+|..++.+-..-     ..+ ++.+...+.+.++..|..++..|..+....+   .....
T Consensus        97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~-----~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~  171 (228)
T PF12348_consen   97 PPLLKKLGDSKKFIREAANNALDAIIESCSYS-----PKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQK  171 (228)
T ss_dssp             HHHHHGGG---HHHHHHHHHHHHHHHTTS-H-------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--
T ss_pred             HHHHHHHccccHHHHHHHHHHHHHHHHHCCcH-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcc
Confidence            99999999888889999999999998874311     122 5566667788899999999999888876554   11111


Q ss_pred             -HHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhhc
Q 006494          605 -ALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSKR  639 (643)
Q Consensus       605 -~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~~  639 (643)
                       ..-..+++.+...+.++++.+|+.|..+++.+.+.
T Consensus       172 ~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~  207 (228)
T PF12348_consen  172 SAFLKQLVKALVKLLSDADPEVREAARECLWALYSH  207 (228)
T ss_dssp             HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence             11134788889999999999999999999988653

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=97.45  E-value=0.0087  Score=60.72  Aligned_cols=278  Identities=13%  Similarity=0.117  Sum_probs=177.4

Q ss_pred             hHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHH--HHHHhcCCCHHHHHHHHHHHHhc-ccChh
Q 006494          359 LIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRP--LVQLLSYPDSKIQEHTVTALLNL-SLDET  435 (643)
Q Consensus       359 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~--Lv~lL~~~~~~~~~~a~~~L~nL-s~~~~  435 (643)
                      ..+.++.++..+-..+.++...|.+.|..++. .+..-..+.+......  +..+-...+.-.+......+..+ +.++.
T Consensus       126 NaeilklildcIggeddeVAkAAiesikrial-fpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpe  204 (524)
T KOG4413|consen  126 NAEILKLILDCIGGEDDEVAKAAIESIKRIAL-FPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPE  204 (524)
T ss_pred             hhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHh-cHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHH
Confidence            45678888888888899999999999999884 5555555555443333  23333333444555666666555 45666


Q ss_pred             hHHHHHhcCChHHHHHHHcc-CCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccC--ChhhHHHHHH----H
Q 006494          436 NKRHIAREGAIPAIIEILQN-GTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYG--SIRGKKDAAT----A  508 (643)
Q Consensus       436 ~k~~i~~~g~i~~Lv~lL~~-~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~--~~~~k~~A~~----a  508 (643)
                      .-.....+|.+..|..-|+. .+.-++.+..-....|+..+..++.+.+.|.|+.+.+++.-.  ++-.+..++.    .
T Consensus       205 saneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkf  284 (524)
T KOG4413|consen  205 SANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKF  284 (524)
T ss_pred             HHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHH
Confidence            66666688988888887875 466677888888889998899999999999999999988532  3433443433    2


Q ss_pred             HHHhhcCCCchHHHHhc--CcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCc--HHHH-HHHHhcCChHH
Q 006494          509 LFNLSINQSNKSRAIKA--GIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSF--IETL-VEIIKNGTPKN  583 (643)
Q Consensus       509 L~nLs~~~en~~~iv~~--G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~--i~~L-v~lL~~~s~~~  583 (643)
                      +.++....-.-..++++  -++...++++...++..++.|+.++..|-++.+|...+.+.|-  ...+ ..........-
T Consensus       285 fgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahak  364 (524)
T KOG4413|consen  285 FGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAK  364 (524)
T ss_pred             hcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccch
Confidence            33333322222233321  2455556777778889999999999999999999999988764  3333 33333333344


Q ss_pred             HHHHHHHHHHhccC---CHHHHHH---------H-H----Hc---CcHHHHHHHHhhCCHHHHHHHHHHHHHhh
Q 006494          584 KECATSVLLELGLN---NSYFILA---------A-L----QY---GVYEHLVEITRCGTNRGQRKANSLLQHMS  637 (643)
Q Consensus       584 ke~A~~~L~~L~~~---~~~~~~~---------~-~----~~---g~i~~L~~ll~~g~~~~k~~A~~lL~~l~  637 (643)
                      ++.|..+|.+++..   .++....         . .    +.   .-.+....+++...+..+-.|.+.+..+.
T Consensus       365 qeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAia  438 (524)
T KOG4413|consen  365 QEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIA  438 (524)
T ss_pred             HHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHH
Confidence            56677777777653   2221111         0 0    11   11333444556667787777777766553

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.43  E-value=8.7e-05  Score=78.74  Aligned_cols=73  Identities=27%  Similarity=0.423  Sum_probs=59.9

Q ss_pred             cCCCCCCcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCCC-----CCCchhhhHHHHHHHHhh
Q 006494          265 QTMLVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHL-----SLAPNYALRNLIVQWCEK  338 (643)
Q Consensus       265 ~~~~~p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~-----~l~pn~~lr~lI~~w~~~  338 (643)
                      .+..++.+|.|-||...+.+||++||||+||..||.+-++. ...||.|+.++...     ...+|+.++.+|..++..
T Consensus        77 ~~~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~-~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~  154 (398)
T KOG4159|consen   77 GPEEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQ-ETECPLCRDELVELPALEQALSLNRLLCKLITKFLEG  154 (398)
T ss_pred             cCccccchhhhhhhHhhcCCCccccccccccHHHHHHHhcc-CCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhh
Confidence            34567899999999999999999999999999999997774 57899999888742     233577777888888754

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=97.41  E-value=0.025  Score=57.48  Aligned_cols=263  Identities=14%  Similarity=0.087  Sum_probs=165.3

Q ss_pred             CHHHHHHHHHHHHHhhhhChhhHH----HHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHHhcCChHHH
Q 006494          374 QLNIKRDSVMKIRMLSKENPDNRI----LIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAI  449 (643)
Q Consensus       374 ~~~~~~~Al~~L~~La~~~~~~r~----~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~L  449 (643)
                      +..+..-+++.+..+....+.|-.    .++++|..+.++......|.++...|...+..++..+..-..+.++..++.+
T Consensus        95 dasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaaleaiFeSellDdl  174 (524)
T KOG4413|consen   95 DASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFESELLDDL  174 (524)
T ss_pred             cchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChH
Confidence            334444455555444433333321    2357888999999999999999999999999999988888888877766655


Q ss_pred             HHH--HccCCHHHHHHHHHHHHHccc-cccccchhhccCChHHHHHHccc-CChhhHHHHHHHHHHhhcCCCchHHHHhc
Q 006494          450 IEI--LQNGTNEARENSAAALFSLSM-LDENRVMVGNLNGIPPLVNLLRY-GSIRGKKDAATALFNLSINQSNKSRAIKA  525 (643)
Q Consensus       450 v~l--L~~~~~~~~~~Aa~~L~~Ls~-~~~~k~~i~~~g~i~~Lv~lL~s-~~~~~k~~A~~aL~nLs~~~en~~~iv~~  525 (643)
                      -..  --..+.-+|......+..+.. ..+.....-.+|.+..|..=++- .+.-+..+++...+.|...+..+..+.+.
T Consensus       175 hlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQe  254 (524)
T KOG4413|consen  175 HLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQE  254 (524)
T ss_pred             HHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchh
Confidence            432  112233445555555555543 33444455557777777666654 56677788888999999888889888999


Q ss_pred             CcHHHHHHHhccC--ChhhHHHHHHHHH----HHhCChhhHHHHHhc--CcHHHHHHHHhcCChHHHHHHHHHHHHhccC
Q 006494          526 GIIPSLLKLLEDK--ALGMVDEALSILQ----LLASHPEGRNEIGRL--SFIETLVEIIKNGTPKNKECATSVLLELGLN  597 (643)
Q Consensus       526 G~v~~Lv~lL~~~--~~~~~~~Al~iL~----nLa~~~~~~~~i~~~--g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~  597 (643)
                      |.|+.+-.++...  ++--.-.++-...    +++--.-.-+++.+.  -+|....+++...+++..+.|+.+|..+.++
T Consensus       255 glIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSn  334 (524)
T KOG4413|consen  255 GLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSN  334 (524)
T ss_pred             hHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCC
Confidence            9999999999652  3322232433333    333222223334332  3466667888889999999999999999886


Q ss_pred             CHHHHHHHHHcC--cHHHHHHHHhhCCHHHH-HHHHHHHHHhh
Q 006494          598 NSYFILAALQYG--VYEHLVEITRCGTNRGQ-RKANSLLQHMS  637 (643)
Q Consensus       598 ~~~~~~~~~~~g--~i~~L~~ll~~g~~~~k-~~A~~lL~~l~  637 (643)
                      ..+. ..++..|  ....|+.-..+.+..++ +.|...|.++.
T Consensus       335 teGa-dlllkTgppaaehllarafdqnahakqeaaihaLaaIa  376 (524)
T KOG4413|consen  335 TEGA-DLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIA  376 (524)
T ss_pred             cchh-HHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhh
Confidence            5443 3344433  33444433334444443 44444555544

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.40  E-value=0.0054  Score=66.32  Aligned_cols=239  Identities=15%  Similarity=0.082  Sum_probs=165.7

Q ss_pred             CChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhh
Q 006494          403 GGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVG  482 (643)
Q Consensus       403 g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~  482 (643)
                      +.||.|-.-+...++.++...+.-|.-|-.-++..-.-.-...++.|..+|.+.+.++|..+-.++.++-..-.++-.-.
T Consensus       167 ~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~  246 (675)
T KOG0212|consen  167 EFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSM  246 (675)
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCcccc
Confidence            45555555555667788777776665543333222111234578889999999999999877777776532111211111


Q ss_pred             c-cCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCCh-hhHHHHH---HHHHHHhCCh
Q 006494          483 N-LNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKAL-GMVDEAL---SILQLLASHP  557 (643)
Q Consensus       483 ~-~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~-~~~~~Al---~iL~nLa~~~  557 (643)
                      + ...++.++.-+.+..+..+..|+.-|.....-++...-..-+|++..++.++.+... ...+.+.   ..|..+++.+
T Consensus       247 d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~  326 (675)
T KOG0212|consen  247 DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSE  326 (675)
T ss_pred             CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhh
Confidence            3 457889999999999999999999999988877776666678889999999877544 2333332   2355566665


Q ss_pred             hhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhh
Q 006494          558 EGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMS  637 (643)
Q Consensus       558 ~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~  637 (643)
                      ...+.+.-...+..+.+.+.+...+.|-.++..+..|-...+...- .-...+.+.|+.-+.+.++.+-..+.++|..++
T Consensus       327 ~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~-~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~  405 (675)
T KOG0212|consen  327 RLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLL-VHNDSIFLTLLKTLSDRSDEVVLLALSLLASIC  405 (675)
T ss_pred             hhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhh-hhccHHHHHHHHhhcCchhHHHHHHHHHHHHHh
Confidence            5555532224578888889888899999999988888776554332 233568888888888999999999999999888


Q ss_pred             hccCC
Q 006494          638 KREHI  642 (643)
Q Consensus       638 ~~~e~  642 (643)
                      ...+-
T Consensus       406 ~s~~~  410 (675)
T KOG0212|consen  406 SSSNS  410 (675)
T ss_pred             cCccc
Confidence            76543

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=97.38  E-value=0.00019  Score=70.71  Aligned_cols=66  Identities=20%  Similarity=0.337  Sum_probs=56.4

Q ss_pred             ccCccCcccccCCeec-CCcccccHHhHHHHHhcCCCCCCCCCcc-cCCCCCCchhhhHHHHHHHHhh
Q 006494          273 FLCPVTLEIMTDPVIV-ATGQTYERESIQRWLNSNHKTCPKTGQI-LDHLSLAPNYALRNLIVQWCEK  338 (643)
Q Consensus       273 f~Cpi~~~~m~dPv~~-~~g~t~~r~~I~~w~~~~~~~cP~~~~~-l~~~~l~pn~~lr~lI~~w~~~  338 (643)
                      +.||+|..++++|+-+ +|||+||..||+.-+-...+.||.|... +-...++|+...+.-|+.+...
T Consensus       275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lkk  342 (427)
T COG5222         275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALKK  342 (427)
T ss_pred             ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHHH
Confidence            8999999999999988 6899999999999988778999999653 4456789998888888877653

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.36  E-value=0.0037  Score=67.57  Aligned_cols=234  Identities=19%  Similarity=0.155  Sum_probs=158.5

Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHHHHHhhh---hChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhH
Q 006494          361 EEICSLIQNLSSSQLNIKRDSVMKIRMLSK---ENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNK  437 (643)
Q Consensus       361 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~---~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k  437 (643)
                      ..++-|++.|...+++++.-+-..+..+..   .+|..-   --...++.++.-+.++++.+|..|+.-+.....-....
T Consensus       208 ~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~---d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~  284 (675)
T KOG0212|consen  208 SLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSM---DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRD  284 (675)
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCcccc---CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcc
Confidence            456677888888888888544333332221   122211   11246788999999999999999988776655433333


Q ss_pred             HHHHhcCChHHHHHHHccCCH-HHHHHHHH---HHHHccccccccchhhccC-ChHHHHHHcccCChhhHHHHHHHHHHh
Q 006494          438 RHIAREGAIPAIIEILQNGTN-EARENSAA---ALFSLSMLDENRVMVGNLN-GIPPLVNLLRYGSIRGKKDAATALFNL  512 (643)
Q Consensus       438 ~~i~~~g~i~~Lv~lL~~~~~-~~~~~Aa~---~L~~Ls~~~~~k~~i~~~g-~i~~Lv~lL~s~~~~~k~~A~~aL~nL  512 (643)
                      -...-+|.+..++..+.+... .++..+.-   .+..+......+.. .+.| .+..|...+.++....+..++.-+..|
T Consensus       285 ~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l  363 (675)
T KOG0212|consen  285 LLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILL  363 (675)
T ss_pred             hhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence            333456777777777766543 34443333   23334333333333 4444 568889999999999999999999888


Q ss_pred             hcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHH
Q 006494          513 SINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLL  592 (643)
Q Consensus       513 s~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~  592 (643)
                      -...+++--.-.....+.|+.-|.+.+..++..++.+++++|..+.....   -.++..|+++......-....+.-++.
T Consensus       364 ~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~---~~fl~sLL~~f~e~~~~l~~Rg~lIIR  440 (675)
T KOG0212|consen  364 YHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNL---RKFLLSLLEMFKEDTKLLEVRGNLIIR  440 (675)
T ss_pred             HhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccH---HHHHHHHHHHHhhhhHHHHhhhhHHHH
Confidence            88878877767788999999999999999999999999999998765522   134555666666655556677888888


Q ss_pred             HhccC-CHHH
Q 006494          593 ELGLN-NSYF  601 (643)
Q Consensus       593 ~L~~~-~~~~  601 (643)
                      .||.. ++++
T Consensus       441 qlC~lL~aE~  450 (675)
T KOG0212|consen  441 QLCLLLNAER  450 (675)
T ss_pred             HHHHHhCHHH
Confidence            88864 4443

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.36  E-value=0.00097  Score=66.49  Aligned_cols=181  Identities=20%  Similarity=0.155  Sum_probs=114.1

Q ss_pred             cCCCHHHHHHHHHHHHHhhhhC--hhhHHHHHh--hCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHHhcCCh
Q 006494          371 SSSQLNIKRDSVMKIRMLSKEN--PDNRILIAN--NGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAI  446 (643)
Q Consensus       371 ~s~~~~~~~~Al~~L~~La~~~--~~~r~~i~~--~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i  446 (643)
                      ++.+|+.+.+|+..|+.+.+.+  ......+.+  ...+..+...+.+....+...|+.++..++..-...-.-.-...+
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l   96 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL   96 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence            5689999999999999999877  333333332  245667777777767778888999888887543322111123478


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCC-hHHHHHHcccCChhhHHHHHHHHHHhhcCCC-chHHHHh
Q 006494          447 PAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNG-IPPLVNLLRYGSIRGKKDAATALFNLSINQS-NKSRAIK  524 (643)
Q Consensus       447 ~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~-i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~e-n~~~iv~  524 (643)
                      +.|++.+.++...++..|..+|..+...-..     .... ++.+...+.+.++.++..++..|..+....+ ....+-.
T Consensus        97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~-----~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~  171 (228)
T PF12348_consen   97 PPLLKKLGDSKKFIREAANNALDAIIESCSY-----SPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQK  171 (228)
T ss_dssp             HHHHHGGG---HHHHHHHHHHHHHHHTTS-H-------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--
T ss_pred             HHHHHHHccccHHHHHHHHHHHHHHHHHCCc-----HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcc
Confidence            8899988888888999999999888643331     1122 4666677788899999999999998876433 2222211


Q ss_pred             ----cCcHHHHHHHhccCChhhHHHHHHHHHHHhCC
Q 006494          525 ----AGIIPSLLKLLEDKALGMVDEALSILQLLASH  556 (643)
Q Consensus       525 ----~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~  556 (643)
                          ..+++.+...+.+.++++.+.|-.++..+..+
T Consensus       172 ~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~  207 (228)
T PF12348_consen  172 SAFLKQLVKALVKLLSDADPEVREAARECLWALYSH  207 (228)
T ss_dssp             HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence                34778888889999999999999999998765

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=97.36  E-value=0.026  Score=59.72  Aligned_cols=187  Identities=26%  Similarity=0.335  Sum_probs=134.7

Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHH
Q 006494          361 EEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHI  440 (643)
Q Consensus       361 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i  440 (643)
                      ..+..+++.+.+.+..++..|...+..+.           ..-+++.|..+|.+.++.++..|+.+|.++-         
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~-----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~---------  102 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGELG-----------SEEAVPLLRELLSDEDPRVRDAAADALGELG---------  102 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhhc-----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccC---------
Confidence            46888888898888888888888765543           1236788999999999999999999776643         


Q ss_pred             HhcCChHHHHHHHcc-CCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhh------------HHHHHH
Q 006494          441 AREGAIPAIIEILQN-GTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRG------------KKDAAT  507 (643)
Q Consensus       441 ~~~g~i~~Lv~lL~~-~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~------------k~~A~~  507 (643)
                       ....++.++..|.+ ++..+|..++.+|..+-          ...++.+|+..+.......            +..++.
T Consensus       103 -~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~----------~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~  171 (335)
T COG1413         103 -DPEAVPPLVELLENDENEGVRAAAARALGKLG----------DERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAE  171 (335)
T ss_pred             -ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcC----------chhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHH
Confidence             34578999999984 78999999999998763          3345788888887765322            222222


Q ss_pred             HHHHhhcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHH
Q 006494          508 ALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECA  587 (643)
Q Consensus       508 aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A  587 (643)
                      +|..          +-....++.+.+.+.+....+...|...|..+....        ....+.+...+...+...+..+
T Consensus       172 ~l~~----------~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~~~~vr~~~  233 (335)
T COG1413         172 ALGE----------LGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSDESLEVRKAA  233 (335)
T ss_pred             HHHH----------cCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCCCHHHHHHH
Confidence            2222          223457888999998888888999999998888765        2345666666766777666666


Q ss_pred             HHHHHHhcc
Q 006494          588 TSVLLELGL  596 (643)
Q Consensus       588 ~~~L~~L~~  596 (643)
                      +..|..+-.
T Consensus       234 ~~~l~~~~~  242 (335)
T COG1413         234 LLALGEIGD  242 (335)
T ss_pred             HHHhcccCc
Confidence            665554443

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.33  E-value=0.017  Score=63.64  Aligned_cols=235  Identities=18%  Similarity=0.243  Sum_probs=157.9

Q ss_pred             CCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCC-----CHHHHHHHHHHHHhccc-ChhhHHHHH-hcC
Q 006494          372 SSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYP-----DSKIQEHTVTALLNLSL-DETNKRHIA-REG  444 (643)
Q Consensus       372 s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~-----~~~~~~~a~~~L~nLs~-~~~~k~~i~-~~g  444 (643)
                      ..++++..+|+++|.|+...++..|..+++.|..+.++..|+..     +++..-...++|.-++. ....+..++ +.+
T Consensus        43 ~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~  122 (446)
T PF10165_consen   43 SPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHH  122 (446)
T ss_pred             CCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhh
Confidence            45788999999999999999999999999999999999999876     67888888888887764 456666666 668


Q ss_pred             ChHHHHHHHcc----------C-------CHHHHHHHHHHHHHccccccccchhhccCChHHHHHHccc---------CC
Q 006494          445 AIPAIIEILQN----------G-------TNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRY---------GS  498 (643)
Q Consensus       445 ~i~~Lv~lL~~----------~-------~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s---------~~  498 (643)
                      ++..|+..|..          .       +.++...+..++||+.........--..+.++.|+.++..         ..
T Consensus       123 ~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l  202 (446)
T PF10165_consen  123 GVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPL  202 (446)
T ss_pred             hHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcc
Confidence            88888887731          0       2344567788999997654433221123445555554421         12


Q ss_pred             hhhHHHHHHHHHHhhcC-CCc-------h----HHHHhcCcHHHHHHHhcc-----CC-h--hhHHHHHHHHHHHhCC-h
Q 006494          499 IRGKKDAATALFNLSIN-QSN-------K----SRAIKAGIIPSLLKLLED-----KA-L--GMVDEALSILQLLASH-P  557 (643)
Q Consensus       499 ~~~k~~A~~aL~nLs~~-~en-------~----~~iv~~G~v~~Lv~lL~~-----~~-~--~~~~~Al~iL~nLa~~-~  557 (643)
                      ......++.+|.|+-.. ...       .    .......++..|+.+|..     .. .  +...-.+.+|.+++.. .
T Consensus       203 ~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~  282 (446)
T PF10165_consen  203 DPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAR  282 (446)
T ss_pred             hhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcH
Confidence            45667777888877210 000       0    011224467777777754     11 1  2344457778888776 4


Q ss_pred             hhHHHHHh---------------c-CcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHH
Q 006494          558 EGRNEIGR---------------L-SFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAAL  606 (643)
Q Consensus       558 ~~~~~i~~---------------~-g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~  606 (643)
                      ..|..+..               . ..-..|++++.+..+..|..+...|+.||..+...-....
T Consensus       283 ~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d~~~~v~~~  347 (446)
T PF10165_consen  283 EVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKEDASRFVKYV  347 (446)
T ss_pred             HHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhhHHHHHHHc
Confidence            44544432               2 2346899999887799999999999999988765444433

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>TIGR02270 conserved hypothetical protein

Probab=97.22  E-value=0.022  Score=61.75  Aligned_cols=151  Identities=22%  Similarity=0.153  Sum_probs=101.2

Q ss_pred             ChHHHHHHhc-CCCHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhh
Q 006494          404 GIRPLVQLLS-YPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVG  482 (643)
Q Consensus       404 ~i~~Lv~lL~-~~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~  482 (643)
                      +++.|+..|. ..+.+....++.++..  .++        ..++..++..|.+.+..++..++.+|..          ++
T Consensus        55 a~~~L~~aL~~d~~~ev~~~aa~al~~--~~~--------~~~~~~L~~~L~d~~~~vr~aaa~ALg~----------i~  114 (410)
T TIGR02270        55 ATELLVSALAEADEPGRVACAALALLA--QED--------ALDLRSVLAVLQAGPEGLCAGIQAALGW----------LG  114 (410)
T ss_pred             HHHHHHHHHhhCCChhHHHHHHHHHhc--cCC--------hHHHHHHHHHhcCCCHHHHHHHHHHHhc----------CC
Confidence            5677777774 4455655544444432  111        1137788888888887788777777753          34


Q ss_pred             ccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHH
Q 006494          483 NLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNE  562 (643)
Q Consensus       483 ~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~  562 (643)
                      ..++.+.|+.+|.+.++.++..++.++..           ......+.|..+|.+.++.+...|+.+|..+..       
T Consensus       115 ~~~a~~~L~~~L~~~~p~vR~aal~al~~-----------r~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~-------  176 (410)
T TIGR02270       115 GRQAEPWLEPLLAASEPPGRAIGLAALGA-----------HRHDPGPALEAALTHEDALVRAAALRALGELPR-------  176 (410)
T ss_pred             chHHHHHHHHHhcCCChHHHHHHHHHHHh-----------hccChHHHHHHHhcCCCHHHHHHHHHHHHhhcc-------
Confidence            55677888888888888777777766554           112345678888887788888888888876553       


Q ss_pred             HHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhc
Q 006494          563 IGRLSFIETLVEIIKNGTPKNKECATSVLLELG  595 (643)
Q Consensus       563 i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~  595 (643)
                         ...++.|...+.+.++.+|..|+..|..+.
T Consensus       177 ---~~a~~~L~~al~d~~~~VR~aA~~al~~lG  206 (410)
T TIGR02270       177 ---RLSESTLRLYLRDSDPEVRFAALEAGLLAG  206 (410)
T ss_pred             ---ccchHHHHHHHcCCCHHHHHHHHHHHHHcC
Confidence               345666777777778888888877775553

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.20  E-value=0.019  Score=66.30  Aligned_cols=243  Identities=15%  Similarity=0.087  Sum_probs=169.0

Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHH-hcccChhhHH
Q 006494          360 IEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALL-NLSLDETNKR  438 (643)
Q Consensus       360 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~-nLs~~~~~k~  438 (643)
                      .+.+|..++.|-|  .--|.+|+.-|.....-.+=.-..-..-|..|.++++|.++-.+++.--+-+=. -|+.++..+.
T Consensus       471 PeQLPiVLQVLLS--QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~  548 (1387)
T KOG1517|consen  471 PEQLPIVLQVLLS--QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQA  548 (1387)
T ss_pred             hHhcchHHHHHHH--HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHH
Confidence            3566666666644  223455555555444222222222234599999999999987777654433322 3577888888


Q ss_pred             HHHhcCChHHHHHHHcc-C--CHHHHHHHHHHHHHcccccc-ccchhhccCChHHHHHHcccC-ChhhHHHHHHHHHHhh
Q 006494          439 HIAREGAIPAIIEILQN-G--TNEARENSAAALFSLSMLDE-NRVMVGNLNGIPPLVNLLRYG-SIRGKKDAATALFNLS  513 (643)
Q Consensus       439 ~i~~~g~i~~Lv~lL~~-~--~~~~~~~Aa~~L~~Ls~~~~-~k~~i~~~g~i~~Lv~lL~s~-~~~~k~~A~~aL~nLs  513 (643)
                      .+++.++-.-.+.+|.. +  +++-|.-||-+|..+..+.. .++...+.+.|...+..|.++ .+-.+...+.+|..|-
T Consensus       549 dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW  628 (1387)
T KOG1517|consen  549 DLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLW  628 (1387)
T ss_pred             HHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHh
Confidence            88887777777777776 3  45778888888888875543 566666777888888888876 5778889999999997


Q ss_pred             c-CCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC-----hhhHHHH-----------HhcCcHH----HH
Q 006494          514 I-NQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH-----PEGRNEI-----------GRLSFIE----TL  572 (643)
Q Consensus       514 ~-~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~-----~~~~~~i-----------~~~g~i~----~L  572 (643)
                      . +.++|-.-++.++...|+.+|.++-+++...|+-+|..+..+     ++....+           ...+.+.    .+
T Consensus       629 ~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~l  708 (1387)
T KOG1517|consen  629 EDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSL  708 (1387)
T ss_pred             hhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHH
Confidence            6 666788888899999999999999999999999999998884     2222222           1122333    56


Q ss_pred             HHHHhcCChHHHHHHHHHHHHhccCCHHHHHH
Q 006494          573 VEIIKNGTPKNKECATSVLLELGLNNSYFILA  604 (643)
Q Consensus       573 v~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~  604 (643)
                      +.++..+++-.+...+.+|..+..+.......
T Consensus       709 l~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~  740 (1387)
T KOG1517|consen  709 LALVSDGSPLVRTEVVVALSHFVVGYVSHLKV  740 (1387)
T ss_pred             HHHHhccchHHHHHHHHHHHHHHHhhHHHhHH
Confidence            77778899988877777888877765544333

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.19  E-value=0.0088  Score=65.88  Aligned_cols=268  Identities=15%  Similarity=0.096  Sum_probs=174.5

Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHH-h---hCChHHHHHHhcCCCHHHHHHHHHHHHhcccChh
Q 006494          360 IEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIA-N---NGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDET  435 (643)
Q Consensus       360 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~-~---~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~  435 (643)
                      ...++.|.+.|.+.+...+..|..+|..++..+.+.-..-+ .   .-.+|.++.+.+++++.++.+|+.++...... .
T Consensus       127 pelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~-~  205 (885)
T KOG2023|consen  127 PELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIII-Q  205 (885)
T ss_pred             hhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeec-C
Confidence            36789999999998888888888888888755443322211 1   23688999999999999999999988654332 2


Q ss_pred             hHHHHH-hcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhc--cCChHHHHHHcccCChhhHHHHHHHHHHh
Q 006494          436 NKRHIA-REGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGN--LNGIPPLVNLLRYGSIRGKKDAATALFNL  512 (643)
Q Consensus       436 ~k~~i~-~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~--~g~i~~Lv~lL~s~~~~~k~~A~~aL~nL  512 (643)
                      .+..+. -..+++.+..+-.+.++++|.+.+.++..|...-..  ++..  .+.+.-++..-++.+..+-..|+.....+
T Consensus       206 ~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d--kl~phl~~IveyML~~tqd~dE~VALEACEFwla~  283 (885)
T KOG2023|consen  206 TQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPD--KLVPHLDNIVEYMLQRTQDVDENVALEACEFWLAL  283 (885)
T ss_pred             cHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH--hcccchHHHHHHHHHHccCcchhHHHHHHHHHHHH
Confidence            333333 345777787777778999999999999888643222  2222  45778888888888888999999999999


Q ss_pred             hcCCCchHHHHh--cCcHHHHHHHhccCChh-------------------------------------------------
Q 006494          513 SINQSNKSRAIK--AGIIPSLLKLLEDKALG-------------------------------------------------  541 (643)
Q Consensus       513 s~~~en~~~iv~--~G~v~~Lv~lL~~~~~~-------------------------------------------------  541 (643)
                      +..+--+..+..  ...+|.|++-+.-.+.+                                                 
T Consensus       284 aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDd  363 (885)
T KOG2023|consen  284 AEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDD  363 (885)
T ss_pred             hcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccc
Confidence            987733433333  45666665433211000                                                 


Q ss_pred             -------hHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhc--CCh--HHHHHHHHHHHHhccCCHHHHHHHHHcCc
Q 006494          542 -------MVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKN--GTP--KNKECATSVLLELGLNNSYFILAALQYGV  610 (643)
Q Consensus       542 -------~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~--~s~--~~ke~A~~~L~~L~~~~~~~~~~~~~~g~  610 (643)
                             +..-.+++|--|+       .+.....++.++.+|+.  +++  .+||.++-+|..++.+.-....--+ ...
T Consensus       364 D~~~dWNLRkCSAAaLDVLa-------nvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~L-peL  435 (885)
T KOG2023|consen  364 DAFSDWNLRKCSAAALDVLA-------NVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHL-PEL  435 (885)
T ss_pred             cccccccHhhccHHHHHHHH-------HhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccch-HHH
Confidence                   0111111111111       12234566666666654  334  4577888888888875432111100 236


Q ss_pred             HHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494          611 YEHLVEITRCGTNRGQRKANSLLQHMSK  638 (643)
Q Consensus       611 i~~L~~ll~~g~~~~k~~A~~lL~~l~~  638 (643)
                      +|.|+.++.+..+-+|....+.|...+.
T Consensus       436 ip~l~~~L~DKkplVRsITCWTLsRys~  463 (885)
T KOG2023|consen  436 IPFLLSLLDDKKPLVRSITCWTLSRYSK  463 (885)
T ss_pred             HHHHHHHhccCccceeeeeeeeHhhhhh
Confidence            8899999999999999998888877664

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=97.15  E-value=0.00027  Score=71.49  Aligned_cols=65  Identities=14%  Similarity=0.391  Sum_probs=52.9

Q ss_pred             CCCcccCccCcccccCCeec-CCcccccHHhHHHHHhcCCCCCCCCCcccCCC----CCCchhhhHHHHHH
Q 006494          269 VPHEFLCPVTLEIMTDPVIV-ATGQTYERESIQRWLNSNHKTCPKTGQILDHL----SLAPNYALRNLIVQ  334 (643)
Q Consensus       269 ~p~~f~Cpi~~~~m~dPv~~-~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~----~l~pn~~lr~lI~~  334 (643)
                      +-...+|++|..+|.|+.++ .|=|||||+||-++|.. ..+||.|+..+-..    .+.+++.|..++.+
T Consensus        12 ~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyK   81 (331)
T KOG2660|consen   12 LNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYK   81 (331)
T ss_pred             cccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHHHH
Confidence            34667999999999999976 59999999999999998 78999998776533    46667777666644

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.14  E-value=0.0019  Score=53.69  Aligned_cols=86  Identities=36%  Similarity=0.486  Sum_probs=69.6

Q ss_pred             hHHHHHHh-cCCCHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhc
Q 006494          405 IRPLVQLL-SYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGN  483 (643)
Q Consensus       405 i~~Lv~lL-~~~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~  483 (643)
                      |+.|++.| +++++.++..++.+|.++-          ...+++.|+.+++++++.+|..|+.+|..+          +.
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i----------~~   60 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRI----------GD   60 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCC----------HH
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHh----------CC
Confidence            57899988 8889999999999998642          124589999999999999999999999876          45


Q ss_pred             cCChHHHHHHcccCC-hhhHHHHHHHHH
Q 006494          484 LNGIPPLVNLLRYGS-IRGKKDAATALF  510 (643)
Q Consensus       484 ~g~i~~Lv~lL~s~~-~~~k~~A~~aL~  510 (643)
                      ..+++.|..++.+++ ..++..|+.+|.
T Consensus        61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   61 PEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence            668999999998764 455777877763

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.13  E-value=0.037  Score=61.70  Aligned_cols=253  Identities=16%  Similarity=0.166  Sum_probs=160.0

Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcC-CCHHHHHHHHHHHHhcccC-hhhH
Q 006494          360 IEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSY-PDSKIQEHTVTALLNLSLD-ETNK  437 (643)
Q Consensus       360 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~nLs~~-~~~k  437 (643)
                      +..++.|++.|..+|+.++-.|+..++.|++.+|.|.-.++     |.+.++|.. .+..+....+....+|+-- +.-.
T Consensus       180 r~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LA-----P~ffkllttSsNNWmLIKiiKLF~aLtplEPRLg  254 (877)
T KOG1059|consen  180 RPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLA-----PLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLG  254 (877)
T ss_pred             hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccccccc-----HHHHHHHhccCCCeehHHHHHHHhhccccCchhh
Confidence            45789999999999999999999999999999988765553     677777754 3445556677777777633 3222


Q ss_pred             HHHHhcCChHHHHHHHccCC-HHHHHHHHHHHHH--ccccc-cccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhh
Q 006494          438 RHIAREGAIPAIIEILQNGT-NEARENSAAALFS--LSMLD-ENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLS  513 (643)
Q Consensus       438 ~~i~~~g~i~~Lv~lL~~~~-~~~~~~Aa~~L~~--Ls~~~-~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs  513 (643)
                      .     ..+++|++++.+.. ......+..++..  ++... ++-..+  .-++..|-.++.+.++..|..++.|+.-+.
T Consensus       255 K-----KLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asi--qLCvqKLr~fiedsDqNLKYlgLlam~KI~  327 (877)
T KOG1059|consen  255 K-----KLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASI--QLCVQKLRIFIEDSDQNLKYLGLLAMSKIL  327 (877)
T ss_pred             h-----hhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHH--HHHHHHHhhhhhcCCccHHHHHHHHHHHHh
Confidence            2     36788999887753 3333333333332  22211 111111  125677777888889999999999999888


Q ss_pred             cCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCC-hHHHHHHHHHHH
Q 006494          514 INQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGT-PKNKECATSVLL  592 (643)
Q Consensus       514 ~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s-~~~ke~A~~~L~  592 (643)
                      ..+.-   .+.+ --..++++|.+.+..+.-.|+..|.-++.....+      .++..|+..+...+ ...|..-+.-+.
T Consensus       328 ktHp~---~Vqa-~kdlIlrcL~DkD~SIRlrALdLl~gmVskkNl~------eIVk~LM~~~~~ae~t~yrdell~~II  397 (877)
T KOG1059|consen  328 KTHPK---AVQA-HKDLILRCLDDKDESIRLRALDLLYGMVSKKNLM------EIVKTLMKHVEKAEGTNYRDELLTRII  397 (877)
T ss_pred             hhCHH---HHHH-hHHHHHHHhccCCchhHHHHHHHHHHHhhhhhHH------HHHHHHHHHHHhccchhHHHHHHHHHH
Confidence            64332   2211 2345788999989999999999998887743222      23555655554333 355555555566


Q ss_pred             HhccCCH-HHHHHHHHcCcHHHHHHHHh-hCCHHHHHHHHHHHHHh
Q 006494          593 ELGLNNS-YFILAALQYGVYEHLVEITR-CGTNRGQRKANSLLQHM  636 (643)
Q Consensus       593 ~L~~~~~-~~~~~~~~~g~i~~L~~ll~-~g~~~~k~~A~~lL~~l  636 (643)
                      .+|+.+. .+...+  +=.+..|+++.. .|+..+..-|..++-..
T Consensus       398 ~iCS~snY~~ItdF--EWYlsVlveLa~l~~~~~G~~I~eQi~Dv~  441 (877)
T KOG1059|consen  398 SICSQSNYQYITDF--EWYLSVLVELARLEGTRHGSLIAEQIIDVA  441 (877)
T ss_pred             HHhhhhhhhhhhhH--HHHHHHHHHHHhccccchhhHHHHHHHHHh
Confidence            7776532 222211  234666677654 55677776666665543

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=97.03  E-value=0.02  Score=58.03  Aligned_cols=227  Identities=16%  Similarity=0.137  Sum_probs=158.6

Q ss_pred             HhcCCCHHHHHHHHHHHHhcccChhhHHHHH-hcCChHHHHHHHcc--CCHHHHHHHHHHHHHccccccccchhhc-cCC
Q 006494          411 LLSYPDSKIQEHTVTALLNLSLDETNKRHIA-REGAIPAIIEILQN--GTNEARENSAAALFSLSMLDENRVMVGN-LNG  486 (643)
Q Consensus       411 lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~-~~g~i~~Lv~lL~~--~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~-~g~  486 (643)
                      ++..-++-++.-|+.+|.+|....+.|..+- +...-..+++.+++  |..+.+.++.-+++.|++.......|-. ...
T Consensus       157 l~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dl  236 (432)
T COG5231         157 LSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDL  236 (432)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            3333345577889999999998888877665 44466788888887  5688999999999999988876644444 457


Q ss_pred             hHHHHHHcccC-ChhhHHHHHHHHHHhhc-C-CCchHHHHhcCcHHHHHHHhcc---CChhhHHHHHHHHHH-------H
Q 006494          487 IPPLVNLLRYG-SIRGKKDAATALFNLSI-N-QSNKSRAIKAGIIPSLLKLLED---KALGMVDEALSILQL-------L  553 (643)
Q Consensus       487 i~~Lv~lL~s~-~~~~k~~A~~aL~nLs~-~-~en~~~iv~~G~v~~Lv~lL~~---~~~~~~~~Al~iL~n-------L  553 (643)
                      |.-|+.++++. ...+.+-++.++.|++. . .+....+.-.|-+.+-++.|..   .+.+++...-.+=..       |
T Consensus       237 i~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l  316 (432)
T COG5231         237 INDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKL  316 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhh
Confidence            88888888776 56677888999999987 2 2344555556655555666544   233333221111111       1


Q ss_pred             hCC------------------------hhhHHHHHhc--CcHHHHHHHHhcCChH-HHHHHHHHHHHhccCCHHHHHHHH
Q 006494          554 ASH------------------------PEGRNEIGRL--SFIETLVEIIKNGTPK-NKECATSVLLELGLNNSYFILAAL  606 (643)
Q Consensus       554 a~~------------------------~~~~~~i~~~--g~i~~Lv~lL~~~s~~-~ke~A~~~L~~L~~~~~~~~~~~~  606 (643)
                      +..                        ..+...+.+.  ..+..|.++++...+. .-.-|+.-+..+.+..|+....+.
T Consensus       317 ~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~  396 (432)
T COG5231         317 CIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLS  396 (432)
T ss_pred             hHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHH
Confidence            110                        1134444443  4678888899886655 344577778888888888888888


Q ss_pred             HcCcHHHHHHHHhhCCHHHHHHHHHHHHHhh
Q 006494          607 QYGVYEHLVEITRCGTNRGQRKANSLLQHMS  637 (643)
Q Consensus       607 ~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~  637 (643)
                      ..|+-..+++++.+.++++|=.|...++.+-
T Consensus       397 Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i  427 (432)
T COG5231         397 KYGVKEIIMNLINHDDDDVKFEALQALQTCI  427 (432)
T ss_pred             HhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence            8999999999999999999999998888654

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=97.03  E-value=0.0046  Score=66.40  Aligned_cols=197  Identities=13%  Similarity=0.094  Sum_probs=148.1

Q ss_pred             HHHHHHhcccC-hhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccc-cccccchhhccCChHHHHHHcccCChh
Q 006494          423 TVTALLNLSLD-ETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSM-LDENRVMVGNLNGIPPLVNLLRYGSIR  500 (643)
Q Consensus       423 a~~~L~nLs~~-~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~-~~~~k~~i~~~g~i~~Lv~lL~s~~~~  500 (643)
                      ++..|..++.+ ..-|.-+.+....++|+++|.+++..+.-.+...+.|+.. .+..+..+.+.|.|..|++++.+.+..
T Consensus       409 ~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDda  488 (743)
T COG5369         409 IVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDA  488 (743)
T ss_pred             HHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhh
Confidence            34445555433 2446666788899999999999776666677788888764 445788888999999999999998889


Q ss_pred             hHHHHHHHHHHhhcCCCc--hHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChh----hHHHHHhcC----cHH
Q 006494          501 GKKDAATALFNLSINQSN--KSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPE----GRNEIGRLS----FIE  570 (643)
Q Consensus       501 ~k~~A~~aL~nLs~~~en--~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~----~~~~i~~~g----~i~  570 (643)
                      .+.+..+.+++|..+..+  +-+++..-++..++++..++.-.+++.++.+|.|+..+..    .+..+....    ...
T Consensus       489 Lqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk  568 (743)
T COG5369         489 LQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFK  568 (743)
T ss_pred             hhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHH
Confidence            999999999999875443  5677888889999999988888999999999999988532    222222221    234


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHH-cCcHHHHHHHHh
Q 006494          571 TLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQ-YGVYEHLVEITR  619 (643)
Q Consensus       571 ~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~-~g~i~~L~~ll~  619 (643)
                      .|++.++..+|..-+..+.+|.+++..++.....+.+ ...+..+.+++.
T Consensus       569 ~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~  618 (743)
T COG5369         569 RLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILD  618 (743)
T ss_pred             HHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHH
Confidence            5666677788887778899999999888776666654 456666666554

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=97.02  E-value=0.023  Score=60.11  Aligned_cols=190  Identities=28%  Similarity=0.328  Sum_probs=128.6

Q ss_pred             CChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhh
Q 006494          403 GGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVG  482 (643)
Q Consensus       403 g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~  482 (643)
                      ..++.+..++.+.++.++..+...+..+.          ..-+++.+..++.+.+..+|..|+.+|..+          +
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~----------~  102 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGELG----------SEEAVPLLRELLSDEDPRVRDAAADALGEL----------G  102 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhhc----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHcc----------C
Confidence            46788999999988888888887754432          344789999999999999999888866554          3


Q ss_pred             ccCChHHHHHHcc-cCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHH-HHhCC----
Q 006494          483 NLNGIPPLVNLLR-YGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQ-LLASH----  556 (643)
Q Consensus       483 ~~g~i~~Lv~lL~-s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~-nLa~~----  556 (643)
                      ...+++.|+.++. +.+..++..|+.+|..+-.          ..++.+|+..+.+.....   +...+. .+...    
T Consensus       103 ~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~----------~~a~~~l~~~l~~~~~~~---a~~~~~~~~~~~r~~a  169 (335)
T COG1413         103 DPEAVPPLVELLENDENEGVRAAAARALGKLGD----------ERALDPLLEALQDEDSGS---AAAALDAALLDVRAAA  169 (335)
T ss_pred             ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc----------hhhhHHHHHHhccchhhh---hhhhccchHHHHHHHH
Confidence            4558899999998 5788999999999987643          234888888887654322   111110 00000    


Q ss_pred             hhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHH
Q 006494          557 PEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQ  634 (643)
Q Consensus       557 ~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~  634 (643)
                      ......+.....++.+.+++......++..|+.+|..+...+         ..+.+.+...+.+.+...+.++...|-
T Consensus       170 ~~~l~~~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~vr~~~~~~l~  238 (335)
T COG1413         170 AEALGELGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEVRKAALLALG  238 (335)
T ss_pred             HHHHHHcCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHHHHHHHHHhc
Confidence            011111223456888999999988899999999999988875         123344444455555555555444443

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.02  E-value=0.0029  Score=52.62  Aligned_cols=86  Identities=33%  Similarity=0.477  Sum_probs=68.7

Q ss_pred             hHHHHHHH-ccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHHHh
Q 006494          446 IPAIIEIL-QNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIK  524 (643)
Q Consensus       446 i~~Lv~lL-~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~  524 (643)
                      |+.|++.| +++++.+|..++.+|..+          +...+++.|+.+++++++.++..|+.+|..+-          .
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~----------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~   60 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGEL----------GDPEAIPALIELLKDEDPMVRRAAARALGRIG----------D   60 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCC----------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------H
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHc----------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------C
Confidence            57899989 778899999999998833          33467999999999999999999999998772          3


Q ss_pred             cCcHHHHHHHhccC-ChhhHHHHHHHHH
Q 006494          525 AGIIPSLLKLLEDK-ALGMVDEALSILQ  551 (643)
Q Consensus       525 ~G~v~~Lv~lL~~~-~~~~~~~Al~iL~  551 (643)
                      ..+++.|.+++.++ +..+...|+.+|+
T Consensus        61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   61 PEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence            45899999999775 4445777777763

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=96.90  E-value=0.00094  Score=54.48  Aligned_cols=45  Identities=22%  Similarity=0.473  Sum_probs=33.2

Q ss_pred             cCccCcccccC-Cee-cCCcccccHHhHHHHHhc--CCCCCCCCCcccC
Q 006494          274 LCPVTLEIMTD-PVI-VATGQTYERESIQRWLNS--NHKTCPKTGQILD  318 (643)
Q Consensus       274 ~Cpi~~~~m~d-Pv~-~~~g~t~~r~~I~~w~~~--~~~~cP~~~~~l~  318 (643)
                      .||.|..--.| |++ -.|||.|..+||.+|++.  .+.+||+||++..
T Consensus        34 ~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~   82 (85)
T PF12861_consen   34 CCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK   82 (85)
T ss_pred             CCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence            45554444334 554 479999999999999995  3568999999864

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=96.83  E-value=0.45  Score=55.41  Aligned_cols=135  Identities=22%  Similarity=0.238  Sum_probs=106.0

Q ss_pred             hHHHHHHHHHHhhc-CCCchHHH----HhcCcHHHHHHHhcc-CChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHH
Q 006494          501 GKKDAATALFNLSI-NQSNKSRA----IKAGIIPSLLKLLED-KALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVE  574 (643)
Q Consensus       501 ~k~~A~~aL~nLs~-~~en~~~i----v~~G~v~~Lv~lL~~-~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~  574 (643)
                      -...++.||.||.+ +++-.+-+    .=-|-++.+..+|.. +++.++..|+.++..+..+.++...+++.+.+..|+.
T Consensus      1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~ 1820 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLT 1820 (2235)
T ss_pred             HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHH
Confidence            34578899999987 55433322    225778888888876 6778999999999999999999999999999999999


Q ss_pred             HHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHH-hhCCHHHHHHHHHHHHHhh
Q 006494          575 IIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEIT-RCGTNRGQRKANSLLQHMS  637 (643)
Q Consensus       575 lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll-~~g~~~~k~~A~~lL~~l~  637 (643)
                      +|++ -|..|+.++.+|+.|++.. +....+.+.|++..+..++ .+.++..|..|+++|--|.
T Consensus      1821 lLHS-~PS~R~~vL~vLYAL~S~~-~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~ 1882 (2235)
T KOG1789|consen 1821 LLHS-QPSMRARVLDVLYALSSNG-QIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQ 1882 (2235)
T ss_pred             HHhc-ChHHHHHHHHHHHHHhcCc-HHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhh
Confidence            9975 4678899999999999864 4555566667777776655 5557888889999987764

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.82  E-value=0.00066  Score=70.29  Aligned_cols=47  Identities=19%  Similarity=0.422  Sum_probs=40.7

Q ss_pred             ccCccCcccccC--C-eecCCcccccHHhHHHHHhcCCCCCCCCCcccCC
Q 006494          273 FLCPVTLEIMTD--P-VIVATGQTYERESIQRWLNSNHKTCPKTGQILDH  319 (643)
Q Consensus       273 f~Cpi~~~~m~d--P-v~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~  319 (643)
                      +.|-||+|-+.+  - +++||+|.|...||..|+......||+|++....
T Consensus       230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~  279 (348)
T KOG4628|consen  230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT  279 (348)
T ss_pred             ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence            799999999984  3 3689999999999999999876779999987654

>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots

Probab=96.82  E-value=0.017  Score=53.21  Aligned_cols=91  Identities=13%  Similarity=0.220  Sum_probs=74.6

Q ss_pred             chhhhhHHHHHHHHHhhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHhhHHHHHHHHHHHH
Q 006494           48 KTQRKECLNMVRRLKLLVPLLEEIRELDGQVSSEALNCLANLKKPLLAAKKLLKDCNYGSKIYLAAESEAVMSRFHAVYD  127 (643)
Q Consensus        48 ~~~~k~~~~l~r~~~ll~p~leel~~~~~~~~~~~~~~l~~L~~~l~~ak~Ll~~c~~~Sklyl~~~~~~i~~~~~~~~~  127 (643)
                      ...|..+..|..-++.|.|+++|+...+..++.+-..-++.|...|++++.|++.|+..+ -|=+..-.....+++++-.
T Consensus        30 ~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV~k~sk~~-r~n~~kk~~y~~Ki~~le~  108 (147)
T PF05659_consen   30 LSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELVEKCSKVR-RWNLYKKPRYARKIEELEE  108 (147)
T ss_pred             HhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHhcccc-HHHHHhhHhHHHHHHHHHH
Confidence            444666778999999999999999876655555558889999999999999999999876 4555677789999999999


Q ss_pred             HHHHHhcc-CCCC
Q 006494          128 KLYEALDD-VPYD  139 (643)
Q Consensus       128 ~l~~~L~~-~p~~  139 (643)
                      +|.+.++. +|+.
T Consensus       109 ~l~~f~~v~~q~~  121 (147)
T PF05659_consen  109 SLRRFIQVDLQLH  121 (147)
T ss_pred             HHHHHhcchhHHH
Confidence            99998874 6644

Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=96.76  E-value=0.16  Score=55.45  Aligned_cols=259  Identities=19%  Similarity=0.171  Sum_probs=146.0

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccC---------
Q 006494          363 ICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLD---------  433 (643)
Q Consensus       363 i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~---------  433 (643)
                      .|+|-..|++.-..++.++++.+..++..+-  -..+. ...+..|-.+|+++....|-.|+++|..|+..         
T Consensus       266 rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv--~~~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN  342 (898)
T COG5240         266 RPFLNSWLSDKFEMVFLEAARAVCALSEENV--GSQFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCN  342 (898)
T ss_pred             HHHHHHHhcCcchhhhHHHHHHHHHHHHhcc--CHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecC
Confidence            3444455566667888999999988875441  11122 23577788899999999999999999988742         


Q ss_pred             hhhHHHHHhcC---ChHHHHHHHccCCHHHHHHHHHHHHHccc--cccccchhhcc-------------CChHHHHHHc-
Q 006494          434 ETNKRHIAREG---AIPAIIEILQNGTNEARENSAAALFSLSM--LDENRVMVGNL-------------NGIPPLVNLL-  494 (643)
Q Consensus       434 ~~~k~~i~~~g---~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~--~~~~k~~i~~~-------------g~i~~Lv~lL-  494 (643)
                      .+.-..|.+.+   ..=++..+|+.|+.+....-...+-++..  .+..|..+.+.             ..+..|.+.| 
T Consensus       343 ~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~  422 (898)
T COG5240         343 KEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLL  422 (898)
T ss_pred             hhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHH
Confidence            12222333322   23367788888877665555555554432  22333333221             1233344333 


Q ss_pred             ccCChhhHHHHHHHHHHhhc-CCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC-hhhHHHHHhc-CcHHH
Q 006494          495 RYGSIRGKKDAATALFNLSI-NQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH-PEGRNEIGRL-SFIET  571 (643)
Q Consensus       495 ~s~~~~~k~~A~~aL~nLs~-~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~-~~~~~~i~~~-g~i~~  571 (643)
                      +.|.-+.|+.++.+|..... .|+.+.++     +..|..++.+.  +.-+-++.+|..|-.. |...    .. -.+..
T Consensus       423 ~eGg~eFK~~~Vdaisd~~~~~p~skEra-----Le~LC~fIEDc--ey~~I~vrIL~iLG~EgP~a~----~P~~yvrh  491 (898)
T COG5240         423 QEGGLEFKKYMVDAISDAMENDPDSKERA-----LEVLCTFIEDC--EYHQITVRILGILGREGPRAK----TPGKYVRH  491 (898)
T ss_pred             hcccchHHHHHHHHHHHHHhhCchHHHHH-----HHHHHHHHhhc--chhHHHHHHHHHhcccCCCCC----CcchHHHH
Confidence            33455666666666655443 33444443     23344444432  2233345555555443 1110    00 11223


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494          572 LVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK  638 (643)
Q Consensus       572 Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~  638 (643)
                      +..-+.-.+..+|..|+.+|...+-+-...   .....+...|.+.+.+.++.+|..|.-+|++|+.
T Consensus       492 IyNR~iLEN~ivRsaAv~aLskf~ln~~d~---~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~  555 (898)
T COG5240         492 IYNRLILENNIVRSAAVQALSKFALNISDV---VSPQSVENALKRCLNDQDDEVRDRASFLLRNMRL  555 (898)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHhccCcccc---ccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhh
Confidence            322222245567888888887766542211   1223456677788899999999999999999974

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=96.75  E-value=0.044  Score=60.40  Aligned_cols=230  Identities=14%  Similarity=0.133  Sum_probs=148.0

Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHH
Q 006494          361 EEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHI  440 (643)
Q Consensus       361 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i  440 (643)
                      ..++.++....+....+|..|....+.+...-+.....    -.++.++.-+....|.....++..|..++.....+-..
T Consensus       216 ~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK----~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~  291 (569)
T KOG1242|consen  216 PILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVK----LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSL  291 (569)
T ss_pred             hhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhh----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHH
Confidence            45666666666677778877776666554322111111    12344444444447899999999999888777666666


Q ss_pred             HhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchh----------h----------------------ccCChH
Q 006494          441 AREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMV----------G----------------------NLNGIP  488 (643)
Q Consensus       441 ~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i----------~----------------------~~g~i~  488 (643)
                      .-...+|.+.+.|-+..+++|..+..++..+...-+|....          +                      +.-.+.
T Consensus       292 ~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLa  371 (569)
T KOG1242|consen  292 CLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLA  371 (569)
T ss_pred             HHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHH
Confidence            67789999999999999999999999998887544443210          0                      112344


Q ss_pred             HHHHHccc----CChhhHHHHHHHHHHhhcCCCchHHHHh--cCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHH
Q 006494          489 PLVNLLRY----GSIRGKKDAATALFNLSINQSNKSRAIK--AGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNE  562 (643)
Q Consensus       489 ~Lv~lL~s----~~~~~k~~A~~aL~nLs~~~en~~~iv~--~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~  562 (643)
                      .++.+|+.    .+...++.++.++.|+|.--++...+..  .-.+|.|-..+.+..++++..+..+|+.+-..-..+..
T Consensus       372 lmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f  451 (569)
T KOG1242|consen  372 LMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF  451 (569)
T ss_pred             HHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc
Confidence            55555543    3567788999999999986655555433  23455555555556788999999998777664333322


Q ss_pred             HHhcCcHHHHHHHHhcC-ChHHHHHHHHHHHHhccC
Q 006494          563 IGRLSFIETLVEIIKNG-TPKNKECATSVLLELGLN  597 (643)
Q Consensus       563 i~~~g~i~~Lv~lL~~~-s~~~ke~A~~~L~~L~~~  597 (643)
                         .+.+|.+.+.+... +...+.-++..|..++.+
T Consensus       452 ---~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~  484 (569)
T KOG1242|consen  452 ---DDLIPELSETLTSEKSLVDRSGAAQDLSEVLAG  484 (569)
T ss_pred             ---cccccHHHHhhccchhhhhhHHHhhhHHHHHhc
Confidence               46677777777542 334444555555555554

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=96.75  E-value=0.027  Score=52.11  Aligned_cols=120  Identities=13%  Similarity=0.167  Sum_probs=96.2

Q ss_pred             hhhccCChHHHHHHcccCCh------hhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccC--ChhhHHHHHHHHH
Q 006494          480 MVGNLNGIPPLVNLLRYGSI------RGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDK--ALGMVDEALSILQ  551 (643)
Q Consensus       480 ~i~~~g~i~~Lv~lL~s~~~------~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~--~~~~~~~Al~iL~  551 (643)
                      .+...|++..|++++.++..      .....++.++.+|-.+.-.-...++...|..++..+...  +..+...|+++|.
T Consensus         6 EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILE   85 (160)
T PF11841_consen    6 EFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILE   85 (160)
T ss_pred             HHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHH
Confidence            44567899999999998863      556678888888877665555677777888888888653  5778999999999


Q ss_pred             HHhCChhhHHHHHhcC-cHHHHHHHHhcCChHHHHHHHHHHHHhccCCH
Q 006494          552 LLASHPEGRNEIGRLS-FIETLVEIIKNGTPKNKECATSVLLELGLNNS  599 (643)
Q Consensus       552 nLa~~~~~~~~i~~~g-~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~  599 (643)
                      +++.++......++.. .++.|+.+|+..+++.+.+|++.+-.|....+
T Consensus        86 s~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~  134 (160)
T PF11841_consen   86 SIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKAD  134 (160)
T ss_pred             HHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Confidence            9999977755555554 58999999999999999999999988876544

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=96.73  E-value=0.0035  Score=43.85  Aligned_cols=39  Identities=31%  Similarity=0.500  Sum_probs=35.9

Q ss_pred             hhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcc
Q 006494          393 PDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLS  431 (643)
Q Consensus       393 ~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs  431 (643)
                      ++++..+.+.|+++.|+.+|.+++.+++..++.+|.||+
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            347888999999999999999999999999999999986

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.71  E-value=0.014  Score=64.28  Aligned_cols=255  Identities=16%  Similarity=0.164  Sum_probs=167.0

Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhccc------C
Q 006494          360 IEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSL------D  433 (643)
Q Consensus       360 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~------~  433 (643)
                      +..+..|+....+.+..++..|+..+-.|.. .......     .....++.+++.+..++..|+.++.-++.      .
T Consensus       197 ~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~e-g~kL~~~-----~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e  270 (823)
T KOG2259|consen  197 EHAARGLIYLEHDQDFRVRTHAVEGLLALSE-GFKLSKA-----CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLE  270 (823)
T ss_pred             HHHHHHHHHHhcCCCcchHHHHHHHHHhhcc-cccccHH-----HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCccc
Confidence            3445558888888899999999999887773 2222211     23557889999889999988776654431      1


Q ss_pred             -hhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHcccccc-ccchhhccCChHHHHHHcccCChhhHHHHHHHHH-
Q 006494          434 -ETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDE-NRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALF-  510 (643)
Q Consensus       434 -~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~-~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~-  510 (643)
                       +.+...+.+ .++..+++.+++.+..+|..|+.+|..+....+ .-.+..+    +.+..-++.  .+........++ 
T Consensus       271 ~e~~e~kl~D-~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLd----KKlms~lRR--kr~ahkrpk~l~s  343 (823)
T KOG2259|consen  271 RESEEEKLKD-AAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLD----KKLMSRLRR--KRTAHKRPKALYS  343 (823)
T ss_pred             chhhhhhhHH-HHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHH----HHHhhhhhh--hhhcccchHHHHh
Confidence             122223333 368889999999999999999999988753332 1111111    111111100  011111111111 


Q ss_pred             Hh--hc------------CCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHH
Q 006494          511 NL--SI------------NQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEII  576 (643)
Q Consensus       511 nL--s~------------~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL  576 (643)
                      +.  ++            ..+.-..++..|+-..++.=|.++--++...|++.++.|+.+..+   +. ..++..|+.++
T Consensus       344 ~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~---FA-~~aldfLvDMf  419 (823)
T KOG2259|consen  344 SGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPG---FA-VRALDFLVDMF  419 (823)
T ss_pred             cCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCC---cH-HHHHHHHHHHh
Confidence            11  00            112244578889999998888877778999999999999987322   11 24678899999


Q ss_pred             hcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhh
Q 006494          577 KNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMS  637 (643)
Q Consensus       577 ~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~  637 (643)
                      .+.-..+|..|..+|..++.+      ..+++..++.+..-+.+.++.+|+....+|.+.+
T Consensus       420 NDE~~~VRL~ai~aL~~Is~~------l~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~  474 (823)
T KOG2259|consen  420 NDEIEVVRLKAIFALTMISVH------LAIREEQLRQILESLEDRSVDVREALRELLKNAR  474 (823)
T ss_pred             ccHHHHHHHHHHHHHHHHHHH------heecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence            888889999999999999886      2344556777788888888888888888887653

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=96.61  E-value=0.13  Score=56.91  Aligned_cols=265  Identities=15%  Similarity=0.090  Sum_probs=169.0

Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHH-HHHHHHhcccChhhHH
Q 006494          360 IEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEH-TVTALLNLSLDETNKR  438 (643)
Q Consensus       360 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~-a~~~L~nLs~~~~~k~  438 (643)
                      ....+.+.+.+++.+...+..+...+..+.+.+  .-..+.+.+.+..|.............. +.-+...+.   .+-.
T Consensus       133 ~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~--~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~---~~Lg  207 (569)
T KOG1242|consen  133 EYVLELLLELLTSTKIAERAGAAYGLAGLVNGL--GIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQ---GNLG  207 (569)
T ss_pred             HHHHHHHHHHhccccHHHHhhhhHHHHHHHcCc--HHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHH---HhcC
Confidence            456777788888888888999999988887432  3445566778888888887654333222 211111110   0000


Q ss_pred             HHHhcCChHHHHHHHc---cCCHHHHHHHHHHHHHcc-ccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhc
Q 006494          439 HIAREGAIPAIIEILQ---NGTNEARENSAAALFSLS-MLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSI  514 (643)
Q Consensus       439 ~i~~~g~i~~Lv~lL~---~~~~~~~~~Aa~~L~~Ls-~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~  514 (643)
                      ...+.+.++.+-.+|.   +....+|..|..+...+. ..+.+..    .-.++.++.-+.....+.|..++..|..++.
T Consensus       208 ~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV----K~llpsll~~l~~~kWrtK~aslellg~m~~  283 (569)
T KOG1242|consen  208 PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV----KLLLPSLLGSLLEAKWRTKMASLELLGAMAD  283 (569)
T ss_pred             CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh----hHhhhhhHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            1224555555555554   344666665555544432 2222211    1234555544444578999999999999998


Q ss_pred             CCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChh-----------------------------hHHHHH-
Q 006494          515 NQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPE-----------------------------GRNEIG-  564 (643)
Q Consensus       515 ~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~-----------------------------~~~~i~-  564 (643)
                      +.+..-......++|.|.+.|.+..+++++.+..+|..+++-.+                             ++..++ 
T Consensus       284 ~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~  363 (569)
T KOG1242|consen  284 CAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVA  363 (569)
T ss_pred             hchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeee
Confidence            88888888889999999999999999999999999988876322                             111111 


Q ss_pred             --hcCcHHHHHHHHhc----CChHHHHHHHHHHHHhccCC--HHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHH
Q 006494          565 --RLSFIETLVEIIKN----GTPKNKECATSVLLELGLNN--SYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQ  634 (643)
Q Consensus       565 --~~g~i~~Lv~lL~~----~s~~~ke~A~~~L~~L~~~~--~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~  634 (643)
                        .+-.+..++.+|+.    .+...+..++.+.+|+|.--  +......+ ..++|-|...+.+--|.+|.-|...|-
T Consensus       364 ~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl-~~Llp~lk~~~~d~~PEvR~vaarAL~  440 (569)
T KOG1242|consen  364 EVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFL-PSLLPGLKENLDDAVPEVRAVAARALG  440 (569)
T ss_pred             eecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhH-HHHhhHHHHHhcCCChhHHHHHHHHHH
Confidence              12345556666654    35566788999999999853  33333222 246777777777777899888888773

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.61  E-value=0.00086  Score=75.64  Aligned_cols=47  Identities=23%  Similarity=0.628  Sum_probs=42.3

Q ss_pred             CCcccCccCcccccC-----CeecCCcccccHHhHHHHHhcCCCCCCCCCccc
Q 006494          270 PHEFLCPVTLEIMTD-----PVIVATGQTYERESIQRWLNSNHKTCPKTGQIL  317 (643)
Q Consensus       270 p~~f~Cpi~~~~m~d-----Pv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l  317 (643)
                      ..+-.|+||.+.|..     |-.++|||.|+..|+.+|++. ..+||.|+..+
T Consensus       289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~CR~~~  340 (543)
T KOG0802|consen  289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPTCRTVL  340 (543)
T ss_pred             hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCcchhhh
Confidence            346789999999999     789999999999999999998 68999999844

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.55  E-value=0.0011  Score=66.14  Aligned_cols=47  Identities=17%  Similarity=0.179  Sum_probs=43.7

Q ss_pred             cCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCCC
Q 006494          274 LCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHL  320 (643)
Q Consensus       274 ~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~  320 (643)
                      .|+||+.-|.-||.++|+|.||.-||+--...+..+||+|+.++++.
T Consensus         9 eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~   55 (324)
T KOG0824|consen    9 ECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST   55 (324)
T ss_pred             cceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence            49999999999999999999999999998888788999999999864

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=96.51  E-value=0.0051  Score=42.98  Aligned_cols=40  Identities=33%  Similarity=0.443  Sum_probs=36.0

Q ss_pred             CCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhC
Q 006494          516 QSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLAS  555 (643)
Q Consensus       516 ~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~  555 (643)
                      ++++..+++.|+++.|+++|.+++..++..|+++|.||+.
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS   41 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence            3477888999999999999998889999999999999974

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=96.44  E-value=0.063  Score=49.75  Aligned_cols=118  Identities=17%  Similarity=0.161  Sum_probs=98.3

Q ss_pred             hHHHHhcCcHHHHHHHhccCC------hhhHHHHHHHHHHHhCChh-hHHHHHhcCcHHHHHHHHhcC--ChHHHHHHHH
Q 006494          519 KSRAIKAGIIPSLLKLLEDKA------LGMVDEALSILQLLASHPE-GRNEIGRLSFIETLVEIIKNG--TPKNKECATS  589 (643)
Q Consensus       519 ~~~iv~~G~v~~Lv~lL~~~~------~~~~~~Al~iL~nLa~~~~-~~~~i~~~g~i~~Lv~lL~~~--s~~~ke~A~~  589 (643)
                      ...++..|++..|++++.++.      ......++.++..|-.+.- +. ...+...|..++.++...  +....+.|++
T Consensus         4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsW-d~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa   82 (160)
T PF11841_consen    4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSW-DTLSDSFIKKIASYVNSSAMDASILQRSLA   82 (160)
T ss_pred             HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCch-hhccHHHHHHHHHHHccccccchHHHHHHH
Confidence            457889999999999998754      3567778999999988854 44 455667899999998764  4778899999


Q ss_pred             HHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhh
Q 006494          590 VLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMS  637 (643)
Q Consensus       590 ~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~  637 (643)
                      +|-++..+++.....+.++=-++.|...++.+++..+.+|..++-.|-
T Consensus        83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~  130 (160)
T PF11841_consen   83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALF  130 (160)
T ss_pred             HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            999999998886777777778999999999999999999999998764

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.40  E-value=0.0014  Score=65.28  Aligned_cols=47  Identities=15%  Similarity=0.234  Sum_probs=41.8

Q ss_pred             CcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccC
Q 006494          271 HEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILD  318 (643)
Q Consensus       271 ~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~  318 (643)
                      -.|.|-||.+.+.+||++.|||+||..|-.+.+.. ...|++|.+..-
T Consensus       240 ~Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk-~~~c~vC~~~t~  286 (313)
T KOG1813|consen  240 LPFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK-GEKCYVCSQQTH  286 (313)
T ss_pred             CCccccccccccccchhhcCCceeehhhhcccccc-CCcceecccccc
Confidence            34889999999999999999999999999988887 478999988653

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.36  E-value=0.0019  Score=64.19  Aligned_cols=47  Identities=13%  Similarity=0.434  Sum_probs=39.0

Q ss_pred             ccCccCccccc--CC-eecCCcccccHHhHHHHHhcCCCCCCCCCcccCC
Q 006494          273 FLCPVTLEIMT--DP-VIVATGQTYERESIQRWLNSNHKTCPKTGQILDH  319 (643)
Q Consensus       273 f~Cpi~~~~m~--dP-v~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~  319 (643)
                      .-|.||++=+.  |- +++||.|.|.+.||.+|+......||+|+.+++.
T Consensus       324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP  373 (374)
T COG5540         324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP  373 (374)
T ss_pred             ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence            57999987664  33 4689999999999999999767789999988764

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=96.32  E-value=0.028  Score=54.27  Aligned_cols=120  Identities=15%  Similarity=0.089  Sum_probs=90.9

Q ss_pred             hhHHHHHHHHHHhhcCCCchHHHHh----------------cCcHHHHHHHhcc------CChhhHHHHHHHHHHHhCCh
Q 006494          500 RGKKDAATALFNLSINQSNKSRAIK----------------AGIIPSLLKLLED------KALGMVDEALSILQLLASHP  557 (643)
Q Consensus       500 ~~k~~A~~aL~nLs~~~en~~~iv~----------------~G~v~~Lv~lL~~------~~~~~~~~Al~iL~nLa~~~  557 (643)
                      .....++..|.||+...+.+..++.                ..++..|++.+..      ....-.+..+.++.|++..+
T Consensus        10 ~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~   89 (192)
T PF04063_consen   10 PLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLP   89 (192)
T ss_pred             chHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCH
Confidence            3445677888888887777765554                2367778888765      23456788999999999999


Q ss_pred             hhHHHHHhc--Cc--HHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHH--cCcHHHHHHHHh
Q 006494          558 EGRNEIGRL--SF--IETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQ--YGVYEHLVEITR  619 (643)
Q Consensus       558 ~~~~~i~~~--g~--i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~--~g~i~~L~~ll~  619 (643)
                      ++|..+.+.  +.  +..|+.++...|..-|.-++.++.|+|-....+...+-.  .+++|.|+.-+.
T Consensus        90 ~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa  157 (192)
T PF04063_consen   90 EGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA  157 (192)
T ss_pred             HHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence            999999874  44  778888888888888889999999999977766554433  467888776655

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.28  E-value=0.024  Score=62.57  Aligned_cols=172  Identities=17%  Similarity=0.173  Sum_probs=123.9

Q ss_pred             hCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHH--Hh---cCChHHHHHHHccCCHHHHHHHHHHHHHcccccc
Q 006494          402 NGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHI--AR---EGAIPAIIEILQNGTNEARENSAAALFSLSMLDE  476 (643)
Q Consensus       402 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i--~~---~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~  476 (643)
                      ...+|.|+.+|.+++...++-|..+|..++.+....-.-  ..   .-.+|.++.+.++.++..|..|.+++-.+-... 
T Consensus       127 pelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~-  205 (885)
T KOG2023|consen  127 PELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQ-  205 (885)
T ss_pred             hhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecC-
Confidence            346889999999999999999999999988765322111  11   126788889999999999999998876553221 


Q ss_pred             ccchhhc-cCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhC
Q 006494          477 NRVMVGN-LNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLAS  555 (643)
Q Consensus       477 ~k~~i~~-~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~  555 (643)
                      .+..+.. ...+..|..+-.+.++.++++.+.++..|......+-.=--.++++.++..-.+.+..+.-+|+.....+|.
T Consensus       206 ~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~ae  285 (885)
T KOG2023|consen  206 TQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAE  285 (885)
T ss_pred             cHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhc
Confidence            2222222 346677777777789999999999999887644433222225677777777777888899999999999999


Q ss_pred             ChhhHHHHHhc--CcHHHHHH
Q 006494          556 HPEGRNEIGRL--SFIETLVE  574 (643)
Q Consensus       556 ~~~~~~~i~~~--g~i~~Lv~  574 (643)
                      .+..+..+...  ..+|.|++
T Consensus       286 qpi~~~~L~p~l~kliPvLl~  306 (885)
T KOG2023|consen  286 QPICKEVLQPYLDKLIPVLLS  306 (885)
T ss_pred             CcCcHHHHHHHHHHHHHHHHc
Confidence            99666666542  45666554

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=96.28  E-value=0.002  Score=68.43  Aligned_cols=55  Identities=20%  Similarity=0.264  Sum_probs=45.9

Q ss_pred             CCcccCccCcccccCCeecCCcccccHHhHHHHHh----cCCCCCCCCCcccCCCCCCc
Q 006494          270 PHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLN----SNHKTCPKTGQILDHLSLAP  324 (643)
Q Consensus       270 p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~----~~~~~cP~~~~~l~~~~l~p  324 (643)
                      ..+-.|.+|.+.-.||+...|.|+|||-||.++..    +.+-+||.|..+|+.....|
T Consensus       534 k~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~  592 (791)
T KOG1002|consen  534 KGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEP  592 (791)
T ss_pred             cCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccccch
Confidence            35578999999999999999999999999988875    34578999999887654333

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=96.25  E-value=0.0034  Score=64.08  Aligned_cols=47  Identities=17%  Similarity=0.441  Sum_probs=39.9

Q ss_pred             CcccCccCcccc-cCC------------eecCCcccccHHhHHHHHhcCCCCCCCCCcccC
Q 006494          271 HEFLCPVTLEIM-TDP------------VIVATGQTYERESIQRWLNSNHKTCPKTGQILD  318 (643)
Q Consensus       271 ~~f~Cpi~~~~m-~dP------------v~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~  318 (643)
                      ++..|-||++=| +.|            --+||||.+.-+|++.|++. ..+||+|+.|+-
T Consensus       286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER-qQTCPICr~p~i  345 (491)
T COG5243         286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER-QQTCPICRRPVI  345 (491)
T ss_pred             CCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh-ccCCCcccCccc
Confidence            567899998874 433            67999999999999999997 589999999954

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.24  E-value=0.13  Score=59.80  Aligned_cols=218  Identities=17%  Similarity=0.105  Sum_probs=151.8

Q ss_pred             HHHHHHHHHhccc----ChhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHH-ccccccccchhhccCChHHHHHHc
Q 006494          420 QEHTVTALLNLSL----DETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFS-LSMLDENRVMVGNLNGIPPLVNLL  494 (643)
Q Consensus       420 ~~~a~~~L~nLs~----~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~-Ls~~~~~k~~i~~~g~i~~Lv~lL  494 (643)
                      |.+-+++|.-|+.    .+-....-..-|.+|-++++|++...+.|..-+-+=.. |+.++..+..++..++-.-.+..|
T Consensus       484 QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL  563 (1387)
T KOG1517|consen  484 QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVL  563 (1387)
T ss_pred             HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEe
Confidence            4455556655552    22222233367999999999999988888655544444 466666777787766556666666


Q ss_pred             cc-C--ChhhHHHHHHHHHHhhc-CCCchHHHHhcCcHHHHHHHhccC-ChhhHHHHHHHHHHHhCC-hhhHHHHHhcCc
Q 006494          495 RY-G--SIRGKKDAATALFNLSI-NQSNKSRAIKAGIIPSLLKLLEDK-ALGMVDEALSILQLLASH-PEGRNEIGRLSF  568 (643)
Q Consensus       495 ~s-~--~~~~k~~A~~aL~nLs~-~~en~~~iv~~G~v~~Lv~lL~~~-~~~~~~~Al~iL~nLa~~-~~~~~~i~~~g~  568 (643)
                      .. .  +++-+..|+.+|..++. ++-.+....+.+.+..-++.|.++ .+-+..-++-+|..|=.+ +..|-.=.+.++
T Consensus       564 ~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~A  643 (1387)
T KOG1517|consen  564 DPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNA  643 (1387)
T ss_pred             cCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccH
Confidence            55 3  45778888899999887 444567778889999999999874 456677777888888776 555555556789


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHhccCC----HHHHHHH-----------HHcCcHH----HHHHHHhhCCHHHHHHH
Q 006494          569 IETLVEIIKNGTPKNKECATSVLLELGLNN----SYFILAA-----------LQYGVYE----HLVEITRCGTNRGQRKA  629 (643)
Q Consensus       569 i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~----~~~~~~~-----------~~~g~i~----~L~~ll~~g~~~~k~~A  629 (643)
                      ...|..+|.+..+++|..|+.+|..+-.+.    ++....+           .-+..+.    +|+.++..|++-.+...
T Consensus       644 hekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev  723 (1387)
T KOG1517|consen  644 HEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEV  723 (1387)
T ss_pred             HHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHH
Confidence            999999999999999999999999888752    2111111           0122333    77788889999888776


Q ss_pred             HHHHHHhh
Q 006494          630 NSLLQHMS  637 (643)
Q Consensus       630 ~~lL~~l~  637 (643)
                      +..|..+.
T Consensus       724 ~v~ls~~~  731 (1387)
T KOG1517|consen  724 VVALSHFV  731 (1387)
T ss_pred             HHHHHHHH
Confidence            66666554

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.14  E-value=0.39  Score=54.55  Aligned_cols=269  Identities=17%  Similarity=0.164  Sum_probs=156.7

Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcC---------------CCHHHHHHHHH
Q 006494          361 EEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSY---------------PDSKIQEHTVT  425 (643)
Q Consensus       361 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~---------------~~~~~~~~a~~  425 (643)
                      ..++...+.|.+.+.-+...++.-+..+++.++++-..+.+  .++.|+..|+.               +||-+|...++
T Consensus       179 ~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLr  256 (866)
T KOG1062|consen  179 HFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILR  256 (866)
T ss_pred             HhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHH
Confidence            44555556666666666666777777777777766555554  55666666652               37888888888


Q ss_pred             HHHhcccChhhHH-HHHh--------------cC---ChHHHHHHHc-cCCHHHHHHHHHHHHHcccccc-ccchhhc--
Q 006494          426 ALLNLSLDETNKR-HIAR--------------EG---AIPAIIEILQ-NGTNEARENSAAALFSLSMLDE-NRVMVGN--  483 (643)
Q Consensus       426 ~L~nLs~~~~~k~-~i~~--------------~g---~i~~Lv~lL~-~~~~~~~~~Aa~~L~~Ls~~~~-~k~~i~~--  483 (643)
                      .|.-|-.++.+-. .|-+              .|   ..+.+-.++. ..+...|..|+.+|..+-.+.+ |-..++=  
T Consensus       257 lLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~  336 (866)
T KOG1062|consen  257 LLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNM  336 (866)
T ss_pred             HHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhh
Confidence            8887765543322 1111              01   0111111111 1344677788888888765544 3222211  


Q ss_pred             --------cCCh----HHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHH
Q 006494          484 --------LNGI----PPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQ  551 (643)
Q Consensus       484 --------~g~i----~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~  551 (643)
                              ..++    ..++.+|++.+...++.|+..++-|.. ..|...|     +..|+.+|...+++.......-+.
T Consensus       337 L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn-~~Nv~~m-----v~eLl~fL~~~d~~~k~~~as~I~  410 (866)
T KOG1062|consen  337 LLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVN-ESNVRVM-----VKELLEFLESSDEDFKADIASKIA  410 (866)
T ss_pred             HHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhc-cccHHHH-----HHHHHHHHHhccHHHHHHHHHHHH
Confidence                    1122    256677778888888888888877753 3454444     345888887777888888888787


Q ss_pred             HHhCC--hhhHHH-------------HHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCC-------H----------
Q 006494          552 LLASH--PEGRNE-------------IGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNN-------S----------  599 (643)
Q Consensus       552 nLa~~--~~~~~~-------------i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~-------~----------  599 (643)
                      .++..  |+.+=.             ++..+++..++.++.++.++..+.++.-|+.-...+       +          
T Consensus       411 ~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~I  490 (866)
T KOG1062|consen  411 ELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCI  490 (866)
T ss_pred             HHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHh
Confidence            77764  332211             234577888999998876555555555444322221       1          


Q ss_pred             -HHHHHHHH------------cCcHHHHHHHHhhC--CHHHHHHHHHHHHHhh
Q 006494          600 -YFILAALQ------------YGVYEHLVEITRCG--TNRGQRKANSLLQHMS  637 (643)
Q Consensus       600 -~~~~~~~~------------~g~i~~L~~ll~~g--~~~~k~~A~~lL~~l~  637 (643)
                       ++-..++.            ..++..|.+++.+.  +...|..|...|--|+
T Consensus       491 GEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLS  543 (866)
T KOG1062|consen  491 GEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLS  543 (866)
T ss_pred             hhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence             11111111            33677788877654  4566777766655554

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=96.10  E-value=0.37  Score=47.48  Aligned_cols=180  Identities=14%  Similarity=0.130  Sum_probs=124.9

Q ss_pred             HHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHHHHccC-----CHHHHHHHHHHHHHcccccc--ccchhhccCChHH
Q 006494          417 SKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNG-----TNEARENSAAALFSLSMLDE--NRVMVGNLNGIPP  489 (643)
Q Consensus       417 ~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~-----~~~~~~~Aa~~L~~Ls~~~~--~k~~i~~~g~i~~  489 (643)
                      ..-..+|+..|--++.+++.|..+..+..---+-.+|..+     .+-.|..+.+++..|..+++  .-..+...+.||.
T Consensus        93 snRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPl  172 (293)
T KOG3036|consen   93 SNRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPL  172 (293)
T ss_pred             cchHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHH
Confidence            3445677878888889999999999876544555666432     35578999999999986655  3445566899999


Q ss_pred             HHHHcccCChhhHHHHHHHHHHhhcCCCchHHH-------Hh-cCcHHHHHHHh-ccCChhhHHHHHHHHHHHhCChhhH
Q 006494          490 LVNLLRYGSIRGKKDAATALFNLSINQSNKSRA-------IK-AGIIPSLLKLL-EDKALGMVDEALSILQLLASHPEGR  560 (643)
Q Consensus       490 Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~i-------v~-~G~v~~Lv~lL-~~~~~~~~~~Al~iL~nLa~~~~~~  560 (643)
                      .+..+..|+...|.-|..++.-+..++..-..+       -. .-.+..++.-+ ..++..+...++.+..+|+.++..|
T Consensus       173 CLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar  252 (293)
T KOG3036|consen  173 CLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRAR  252 (293)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHH
Confidence            999999999999999999988877665542222       11 22333344334 3378889999999999999999999


Q ss_pred             HHHHhc--CcH--HHHHHHHhcCChHHHHHHHHHHHHhccC
Q 006494          561 NEIGRL--SFI--ETLVEIIKNGTPKNKECATSVLLELGLN  597 (643)
Q Consensus       561 ~~i~~~--g~i--~~Lv~lL~~~s~~~ke~A~~~L~~L~~~  597 (643)
                      .++...  +.+  .....+++ .++..+..-...+.++|.+
T Consensus       253 ~aL~~clPd~Lrd~tfs~~l~-~D~~~k~~l~~ll~~l~~~  292 (293)
T KOG3036|consen  253 AALRSCLPDQLRDGTFSLLLK-DDPETKQWLQQLLKNLCTG  292 (293)
T ss_pred             HHHHhhCcchhccchHHHHHh-cChhHHHHHHHHHHHhccC
Confidence            888652  111  12233343 4555666655666666653

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.00  E-value=0.24  Score=58.55  Aligned_cols=220  Identities=13%  Similarity=0.165  Sum_probs=131.8

Q ss_pred             CCCHHHHHHHHHHHHhcccChhhHHHHHh--cCChHHHHHHHccCCHHHHHHHHHHHHHccccc--cccchhhccCChHH
Q 006494          414 YPDSKIQEHTVTALLNLSLDETNKRHIAR--EGAIPAIIEILQNGTNEARENSAAALFSLSMLD--ENRVMVGNLNGIPP  489 (643)
Q Consensus       414 ~~~~~~~~~a~~~L~nLs~~~~~k~~i~~--~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~--~~k~~i~~~g~i~~  489 (643)
                      +.+..+|..+..+|..|+..+........  ......|...+++-...++..+..+|..|-...  +....+  ...|+-
T Consensus       665 ~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i--~k~I~E  742 (1176)
T KOG1248|consen  665 SSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI--PKLIPE  742 (1176)
T ss_pred             cccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH--HHHHHH
Confidence            34778899999999888766433333221  112223333334444445555555555543211  222222  124444


Q ss_pred             HHHHcccCChhhHHHHHHHHHHhhcCCCchHHHHhcC------cHHHHHHHhccC--ChhhHHHH--HHHHHHHhCC-hh
Q 006494          490 LVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAG------IIPSLLKLLEDK--ALGMVDEA--LSILQLLASH-PE  558 (643)
Q Consensus       490 Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G------~v~~Lv~lL~~~--~~~~~~~A--l~iL~nLa~~-~~  558 (643)
                      ++-.++..+...++.|..+|.+++.    .....+.|      .+...+.++..+  +......|  +-++..+... ..
T Consensus       743 vIL~~Ke~n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~  818 (1176)
T KOG1248|consen  743 VILSLKEVNVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKN  818 (1176)
T ss_pred             HHHhcccccHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhc
Confidence            4444477788899999999998883    22222222      455555555432  22222222  2233333322 11


Q ss_pred             hHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494          559 GRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK  638 (643)
Q Consensus       559 ~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~  638 (643)
                      .-....=.+.+..+..+|.+++++....|+..+..++..-++.+..--.+-+++.+..++++++-..+.+...+|..|.+
T Consensus       819 ~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLir  898 (1176)
T KOG1248|consen  819 ILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIR  898 (1176)
T ss_pred             cccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            11111112456666677788999999999999999999888776665556789999999999999999999999998865


Q ss_pred             c
Q 006494          639 R  639 (643)
Q Consensus       639 ~  639 (643)
                      .
T Consensus       899 k  899 (1176)
T KOG1248|consen  899 K  899 (1176)
T ss_pred             H
Confidence            3

>PF04641 Rtf2: Rtf2 RING-finger

Probab=95.91  E-value=0.006  Score=62.14  Aligned_cols=54  Identities=22%  Similarity=0.488  Sum_probs=44.5

Q ss_pred             CCCcccCccCcccccC---Ce-ecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCc
Q 006494          269 VPHEFLCPVTLEIMTD---PV-IVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAP  324 (643)
Q Consensus       269 ~p~~f~Cpi~~~~m~d---Pv-~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~p  324 (643)
                      -...|.||||+..|..   =| +.+|||.|...+|++--  ....||.|+.++...+++|
T Consensus       110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI~  167 (260)
T PF04641_consen  110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDIIP  167 (260)
T ss_pred             CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEEE
Confidence            4678999999999964   22 35999999999999983  3567999999999888775

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.88  E-value=0.53  Score=53.39  Aligned_cols=256  Identities=20%  Similarity=0.228  Sum_probs=159.0

Q ss_pred             HHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhccc-Ch-----h
Q 006494          362 EICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSL-DE-----T  435 (643)
Q Consensus       362 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~-----~  435 (643)
                      ..+++=+.|.+...-+..+|++.+..|...+.  | .+.  .++..|--+|+++..-+|-.|+++|..++. ++     -
T Consensus       246 ~~~fl~s~l~~K~emV~~EaArai~~l~~~~~--r-~l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~c  320 (865)
T KOG1078|consen  246 LFPFLESCLRHKSEMVIYEAARAIVSLPNTNS--R-ELA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVC  320 (865)
T ss_pred             HHHHHHHHHhchhHHHHHHHHHHHhhccccCH--h-hcc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccccc
Confidence            34555566667778889999999988874332  2 222  277788888999989999999999988863 22     1


Q ss_pred             hH---HHHHhcC---ChHHHHHHHccCCHHHH----HHHHHHHHHccccccccchhhc-------------cCChHHHHH
Q 006494          436 NK---RHIAREG---AIPAIIEILQNGTNEAR----ENSAAALFSLSMLDENRVMVGN-------------LNGIPPLVN  492 (643)
Q Consensus       436 ~k---~~i~~~g---~i~~Lv~lL~~~~~~~~----~~Aa~~L~~Ls~~~~~k~~i~~-------------~g~i~~Lv~  492 (643)
                      |+   ..|.+.+   +-..+..+|+.|+....    ...+....+++  ++++..+++             .+.+..|.+
T Consensus       321 N~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~dis--DeFKivvvdai~sLc~~fp~k~~~~m~FL~~  398 (865)
T KOG1078|consen  321 NLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDIS--DEFKIVVVDAIRSLCLKFPRKHTVMMNFLSN  398 (865)
T ss_pred             chhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhcc--ccceEEeHHHHHHHHhhccHHHHHHHHHHHH
Confidence            11   2233222   45577788888865433    34444555554  344443332             245666777


Q ss_pred             Hccc-CChhhHHHHHHHHHHhhc-CCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHH
Q 006494          493 LLRY-GSIRGKKDAATALFNLSI-NQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIE  570 (643)
Q Consensus       493 lL~s-~~~~~k~~A~~aL~nLs~-~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~  570 (643)
                      +|++ |.-+.|+....++..+.. +++.|..     ++..|.+.+.+.  +....+..+|..|-...  -.+.....-+.
T Consensus       399 ~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~-----~L~~LCefIEDc--e~~~i~~rILhlLG~Eg--P~a~~Pskyir  469 (865)
T KOG1078|consen  399 MLREEGGFEFKRAIVDAIIDIIEENPDSKER-----GLEHLCEFIEDC--EFTQIAVRILHLLGKEG--PKAPNPSKYIR  469 (865)
T ss_pred             HHHhccCchHHHHHHHHHHHHHHhCcchhhH-----HHHHHHHHHHhc--cchHHHHHHHHHHhccC--CCCCCcchhhH
Confidence            7754 455677777777766554 5555544     344566666542  34455666666665431  11111123344


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494          571 TLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK  638 (643)
Q Consensus       571 ~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~  638 (643)
                      .+...+.-.+..+|..|+.+|..+..+++.     ....+...|.+.+.+.++.++..|...|+.+..
T Consensus       470 ~iyNRviLEn~ivRaaAv~alaKfg~~~~~-----l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~  532 (865)
T KOG1078|consen  470 FIYNRVILENAIVRAAAVSALAKFGAQDVV-----LLPSILVLLKRCLNDSDDEVRDRATFYLKNLEE  532 (865)
T ss_pred             HHhhhhhhhhhhhHHHHHHHHHHHhcCCCC-----ccccHHHHHHHHhcCchHHHHHHHHHHHHHhhh
Confidence            444444446778888999999988854432     223456666678888999999999999998873

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=95.81  E-value=0.049  Score=46.63  Aligned_cols=66  Identities=15%  Similarity=0.085  Sum_probs=56.6

Q ss_pred             hHHHHHHHHHHHhCC-hhhHHHHHhcCcHHHHHHHH--hcCChHHHHHHHHHHHHhccCCHHHHHHHHH
Q 006494          542 MVDEALSILQLLASH-PEGRNEIGRLSFIETLVEII--KNGTPKNKECATSVLLELGLNNSYFILAALQ  607 (643)
Q Consensus       542 ~~~~Al~iL~nLa~~-~~~~~~i~~~g~i~~Lv~lL--~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~  607 (643)
                      +....+.+|+||+.. +..+..+.+.|+++.++..-  ...+|-.+|+|+.++.+||.++++....+.+
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~   70 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ   70 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            345678999999986 78899999999999998864  4578999999999999999999988877655

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.81  E-value=0.0075  Score=59.51  Aligned_cols=49  Identities=27%  Similarity=0.334  Sum_probs=41.7

Q ss_pred             CCcccCccCcccccCCeecC-CcccccHHhHHHHHhc-CCCCCCCCCcccC
Q 006494          270 PHEFLCPVTLEIMTDPVIVA-TGQTYERESIQRWLNS-NHKTCPKTGQILD  318 (643)
Q Consensus       270 p~~f~Cpi~~~~m~dPv~~~-~g~t~~r~~I~~w~~~-~~~~cP~~~~~l~  318 (643)
                      -..-.||+|++-=+.|.++. |||.||..||..-+.. -..+||.|+.+..
T Consensus       237 t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  237 TSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE  287 (298)
T ss_pred             cCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence            45678999999999999875 9999999999998873 2479999998765

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.75  E-value=0.097  Score=59.36  Aligned_cols=197  Identities=16%  Similarity=0.118  Sum_probs=137.6

Q ss_pred             ChhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHH-HccccccccchhhccCChHHHHHHcccCC-hhhHHHHHHHHH
Q 006494          433 DETNKRHIAREGAIPAIIEILQNGTNEARENSAAALF-SLSMLDENRVMVGNLNGIPPLVNLLRYGS-IRGKKDAATALF  510 (643)
Q Consensus       433 ~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~-~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~-~~~k~~A~~aL~  510 (643)
                      ...-+...+..|+...|+.+...+.++++-....+|. .+++..+     .....++++.+.+.+.. .-....++.++.
T Consensus       493 ~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~-----~~~~v~~~~~s~~~~d~~~~en~E~L~alt  567 (748)
T KOG4151|consen  493 EKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGE-----RSYEVVKPLDSALHNDEKGLENFEALEALT  567 (748)
T ss_pred             hHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCC-----chhhhhhhhcchhhhhHHHHHHHHHHHHhh
Confidence            3344455668899999999999888888888888887 2222111     01356777777776543 344568899999


Q ss_pred             HhhcCC-CchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHH-HHh-cCcHHHHHHHHhcCChHHHHHH
Q 006494          511 NLSINQ-SNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNE-IGR-LSFIETLVEIIKNGTPKNKECA  587 (643)
Q Consensus       511 nLs~~~-en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~-i~~-~g~i~~Lv~lL~~~s~~~ke~A  587 (643)
                      ||++.. ..|.+++..-+++.+-+++.+.++..+..++..+.||..++..-+. +++ ....+.....+....+...-.+
T Consensus       568 nLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~  647 (748)
T KOG4151|consen  568 NLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAG  647 (748)
T ss_pred             cccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhc
Confidence            999844 4588899888888888888888899999999999999999865443 344 3556666666665445555556


Q ss_pred             HHHHHHhccCCHHHHHHHHH-cCcHHHHHHHHhhCCHHHHHHHHHHHH
Q 006494          588 TSVLLELGLNNSYFILAALQ-YGVYEHLVEITRCGTNRGQRKANSLLQ  634 (643)
Q Consensus       588 ~~~L~~L~~~~~~~~~~~~~-~g~i~~L~~ll~~g~~~~k~~A~~lL~  634 (643)
                      ++++..+......+|..+.. ......++.++.++.+.++.......-
T Consensus       648 a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~l  695 (748)
T KOG4151|consen  648 AGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIIL  695 (748)
T ss_pred             cccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhh
Confidence            66666666666666553222 456788888888888888766555433

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=95.73  E-value=0.54  Score=51.90  Aligned_cols=233  Identities=16%  Similarity=0.186  Sum_probs=132.3

Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhC--hhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhH
Q 006494          360 IEEICSLIQNLSSSQLNIKRDSVMKIRMLSKEN--PDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNK  437 (643)
Q Consensus       360 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~--~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k  437 (643)
                      ...+..++..|++..++++.+|+.....|++--  -..-..+...|.|  |..-|...++++.-..+.++..+...-. -
T Consensus       603 ~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lge~ypEvLgsil~Ai~~I~sv~~-~  679 (975)
T COG5181         603 SMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLGEDYPEVLGSILKAICSIYSVHR-F  679 (975)
T ss_pred             HHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcCcccHHHHHHHHHHHHHHhhhhc-c
Confidence            457788889999999999999998888777421  0111223334443  6667777778876555555544321111 0


Q ss_pred             HHHH--hcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhc-cCChHHHHHHcccCChhhHHHHHHHHHHhhc
Q 006494          438 RHIA--REGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGN-LNGIPPLVNLLRYGSIRGKKDAATALFNLSI  514 (643)
Q Consensus       438 ~~i~--~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~-~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~  514 (643)
                      ..+.  -.|.+|.|..+|++....+..+..+.+..++..........+ ...--.|+++|++.+.+.+++|...+..++.
T Consensus       680 ~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~  759 (975)
T COG5181         680 RSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISR  759 (975)
T ss_pred             cccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence            1111  357899999999999988999999888888754432211111 2233567888888888888877665554432


Q ss_pred             C--C--------------CchH--------HHHh--cCcHHHHHHHhcc---CChhhHHHHHHHHHHHhCCh--hhHHHH
Q 006494          515 N--Q--------------SNKS--------RAIK--AGIIPSLLKLLED---KALGMVDEALSILQLLASHP--EGRNEI  563 (643)
Q Consensus       515 ~--~--------------en~~--------~iv~--~G~v~~Lv~lL~~---~~~~~~~~Al~iL~nLa~~~--~~~~~i  563 (643)
                      -  +              +-+.        .++.  .|-...|=.++.+   ++..++...+.+++-+-..-  ..+.-+
T Consensus       760 aiGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYv  839 (975)
T COG5181         760 AIGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYV  839 (975)
T ss_pred             hcCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            1  1              0000        0111  2323333333333   44455555555555443321  111111


Q ss_pred             HhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccC
Q 006494          564 GRLSFIETLVEIIKNGTPKNKECATSVLLELGLN  597 (643)
Q Consensus       564 ~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~  597 (643)
                        ....|.|-..|.+.++.-++.|..++.+|.-+
T Consensus       840 --y~itPlleDAltDrD~vhRqta~nvI~Hl~Ln  871 (975)
T COG5181         840 --YSITPLLEDALTDRDPVHRQTAMNVIRHLVLN  871 (975)
T ss_pred             --HHhhHHHHhhhcccchHHHHHHHHHHHHHhcC
Confidence              12344455555566777777777777776654

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.70  E-value=0.092  Score=59.30  Aligned_cols=73  Identities=15%  Similarity=0.178  Sum_probs=60.1

Q ss_pred             hHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccCh
Q 006494          359 LIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDE  434 (643)
Q Consensus       359 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~  434 (643)
                      .......+.+.+++.++.+|..++-.+..+-   ..+.......|.++.|-.++.+.++.+..+|+.+|..+...+
T Consensus       119 ~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~---~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~  191 (734)
T KOG1061|consen  119 TEYLCDPLLKCLKDDDPYVRKTAAVCVAKLF---DIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESH  191 (734)
T ss_pred             HHHHHHHHHHhccCCChhHHHHHHHHHHHhh---cCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhC
Confidence            3567788999999999999999888877765   334556677899999999999889999999999999886544

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=95.68  E-value=0.008  Score=60.78  Aligned_cols=52  Identities=25%  Similarity=0.509  Sum_probs=44.8

Q ss_pred             CCCCCCcccCccCcccccCCeecC-CcccccHHhHHHHHhcCCCCCCCCCcccC
Q 006494          266 TMLVPHEFLCPVTLEIMTDPVIVA-TGQTYERESIQRWLNSNHKTCPKTGQILD  318 (643)
Q Consensus       266 ~~~~p~~f~Cpi~~~~m~dPv~~~-~g~t~~r~~I~~w~~~~~~~cP~~~~~l~  318 (643)
                      ...+|+.-.||+|+.--.+|.++. ||..||..||-++..+ +..||+|+-|..
T Consensus       294 e~l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~-~~~CPVT~~p~~  346 (357)
T KOG0826|consen  294 ELLPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVN-YGHCPVTGYPAS  346 (357)
T ss_pred             ccCCCccccChhHHhccCCCceEEecceEEeHHHHHHHHHh-cCCCCccCCcch
Confidence            345678889999999999998775 6999999999999995 789999998765

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=95.67  E-value=0.0045  Score=57.78  Aligned_cols=45  Identities=20%  Similarity=0.404  Sum_probs=39.8

Q ss_pred             cccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCccc
Q 006494          272 EFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQIL  317 (643)
Q Consensus       272 ~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l  317 (643)
                      .|.|-||.+-+..||++.|||.||..|--+-...| .+|-+|+...
T Consensus       196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg-~~C~~Cgk~t  240 (259)
T COG5152         196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQKG-DECGVCGKAT  240 (259)
T ss_pred             ceeehhchhhccchhhhhcchhHHHHHHHHHhccC-Ccceecchhh
Confidence            49999999999999999999999999988877764 7898888654

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=95.64  E-value=0.29  Score=55.00  Aligned_cols=257  Identities=12%  Similarity=0.111  Sum_probs=139.7

Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhH---HHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhH
Q 006494          361 EEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNR---ILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNK  437 (643)
Q Consensus       361 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r---~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k  437 (643)
                      ..+..++..|++.++.++.+|+..+..+++- -.++   ..+...|.|  |...|...++++.-..+.+|..+... -.-
T Consensus       799 qi~stiL~rLnnksa~vRqqaadlis~la~V-lktc~ee~~m~~lGvv--LyEylgeeypEvLgsILgAikaI~nv-igm  874 (1172)
T KOG0213|consen  799 QICSTILWRLNNKSAKVRQQAADLISSLAKV-LKTCGEEKLMGHLGVV--LYEYLGEEYPEVLGSILGAIKAIVNV-IGM  874 (1172)
T ss_pred             HHHHHHHHHhcCCChhHHHHHHHHHHHHHHH-HHhccHHHHHHHhhHH--HHHhcCcccHHHHHHHHHHHHHHHHh-ccc
Confidence            4556677788999999999999998888742 1111   123334444  77788877888765544444432210 011


Q ss_pred             HHHH--hcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhc-cCChHHHHHHcccCChhhHHHHHHHHHHhhc
Q 006494          438 RHIA--REGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGN-LNGIPPLVNLLRYGSIRGKKDAATALFNLSI  514 (643)
Q Consensus       438 ~~i~--~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~-~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~  514 (643)
                      ..+.  -.+.+|.|.-+|++....++++....+..++..........+ ...--.|+.+|++.+...+++|...+.-++.
T Consensus       875 ~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Iak  954 (1172)
T KOG0213|consen  875 TKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAK  954 (1172)
T ss_pred             cccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            1122  357899999999999999999999999988743322111111 2334568888899888999999888776653


Q ss_pred             CCCchHHHHhcCcHHHHHHHhccC---ChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHH
Q 006494          515 NQSNKSRAIKAGIIPSLLKLLEDK---ALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVL  591 (643)
Q Consensus       515 ~~en~~~iv~~G~v~~Lv~lL~~~---~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L  591 (643)
                      -      +--..++..|++-|+..   +.....-|.++.+.-|.--         .++|.|+.=-+.....+|.-.+.+|
T Consensus       955 a------IGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pF---------tVLPalmneYrtPe~nVQnGVLkal 1019 (1172)
T KOG0213|consen  955 A------IGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPF---------TVLPALMNEYRTPEANVQNGVLKAL 1019 (1172)
T ss_pred             h------cCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCch---------hhhHHHHhhccCchhHHHHhHHHHH
Confidence            1      11133445555555432   1122233333333333211         2233333333333334444444444


Q ss_pred             HHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhh
Q 006494          592 LELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMS  637 (643)
Q Consensus       592 ~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~  637 (643)
                      ..+-..-++.....+ ..+.|.|-..+.+.+.-=+.-|..++++|.
T Consensus      1020 sf~FeyigemskdYi-yav~PlleDAlmDrD~vhRqta~~~I~Hl~ 1064 (1172)
T KOG0213|consen 1020 SFMFEYIGEMSKDYI-YAVTPLLEDALMDRDLVHRQTAMNVIKHLA 1064 (1172)
T ss_pred             HHHHHHHHHHhhhHH-HHhhHHHHHhhccccHHHHHHHHHHHHHHh
Confidence            444332221111111 123444445555555555666666666553

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=95.50  E-value=0.5  Score=54.45  Aligned_cols=100  Identities=26%  Similarity=0.227  Sum_probs=49.2

Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHHHhcCc
Q 006494          448 AIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGI  527 (643)
Q Consensus       448 ~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~  527 (643)
                      .+.+=+++.++.+|..|..++..+=.    ++.+  ...++++.+++.++++.+++.|+.|+.++-..  .+....+.|.
T Consensus        96 ti~kDl~d~N~~iR~~AlR~ls~l~~----~el~--~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l--d~~l~~~~g~  167 (757)
T COG5096          96 TIQKDLQDPNEEIRGFALRTLSLLRV----KELL--GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL--DKDLYHELGL  167 (757)
T ss_pred             HHHhhccCCCHHHHHHHHHHHHhcCh----HHHH--HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc--CHhhhhcccH
Confidence            34444445555555555555544411    0111  12445555555555555556555555555321  2333344555


Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhC
Q 006494          528 IPSLLKLLEDKALGMVDEALSILQLLAS  555 (643)
Q Consensus       528 v~~Lv~lL~~~~~~~~~~Al~iL~nLa~  555 (643)
                      +..+..++.+.++.+...|+..|..+..
T Consensus       168 ~~~l~~l~~D~dP~Vi~nAl~sl~~i~~  195 (757)
T COG5096         168 IDILKELVADSDPIVIANALASLAEIDP  195 (757)
T ss_pred             HHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence            5555555555555555555555555543

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=95.50  E-value=0.4  Score=47.26  Aligned_cols=138  Identities=15%  Similarity=0.111  Sum_probs=101.9

Q ss_pred             hHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhcc-----CChhhHHHHHHHHHHHhCCh--hhHHHHHhcCcHHHHH
Q 006494          501 GKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLED-----KALGMVDEALSILQLLASHP--EGRNEIGRLSFIETLV  573 (643)
Q Consensus       501 ~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~-----~~~~~~~~Al~iL~nLa~~~--~~~~~i~~~g~i~~Lv  573 (643)
                      -..+|+..|..++++++.|..++++..--.|..+|..     +.+-+.-.++++++.|..+.  +.-.-+...++||..+
T Consensus        95 RVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCL  174 (293)
T KOG3036|consen   95 RVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCL  174 (293)
T ss_pred             hHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHH
Confidence            3457888888899999999999999888888888753     23456778999999999873  3444556689999999


Q ss_pred             HHHhcCChHHHHHHHHHHHHhccCCHH---HHHHHHH----cCcHHHHH-HHHhhCCHHHHHHHHHHHHHhhh
Q 006494          574 EIIKNGTPKNKECATSVLLELGLNNSY---FILAALQ----YGVYEHLV-EITRCGTNRGQRKANSLLQHMSK  638 (643)
Q Consensus       574 ~lL~~~s~~~ke~A~~~L~~L~~~~~~---~~~~~~~----~g~i~~L~-~ll~~g~~~~k~~A~~lL~~l~~  638 (643)
                      +.+..||+..|.-|..++-.+-..+.+   .|+..-.    .-++..++ .+...+++|.-+.+.++..+|++
T Consensus       175 rime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsd  247 (293)
T KOG3036|consen  175 RIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSD  247 (293)
T ss_pred             HHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Confidence            999999999999999999888776543   2222222    12333333 34556678887777777777664

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=95.50  E-value=0.2  Score=57.79  Aligned_cols=264  Identities=13%  Similarity=0.104  Sum_probs=146.4

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccC-hhhH-HHHHh
Q 006494          365 SLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLD-ETNK-RHIAR  442 (643)
Q Consensus       365 ~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~k-~~i~~  442 (643)
                      .|++.+.++|.+.|+-|...|..=...+..+-..-.+...+..|+++|.+.+.++|..|+.+|.-|+.. .+.+ ..+  
T Consensus         9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~--   86 (1233)
T KOG1824|consen    9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETI--   86 (1233)
T ss_pred             HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHH--
Confidence            788999999999999998877532211111111112345678899999999999999999999987621 1111 111  


Q ss_pred             cCChHHHHHHHccCCHHHHHHHH-HHHHHccccccccchhhccCChHHHHHHccc------CChhhHHHHHHHHHHhhc-
Q 006494          443 EGAIPAIIEILQNGTNEARENSA-AALFSLSMLDENRVMVGNLNGIPPLVNLLRY------GSIRGKKDAATALFNLSI-  514 (643)
Q Consensus       443 ~g~i~~Lv~lL~~~~~~~~~~Aa-~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s------~~~~~k~~A~~aL~nLs~-  514 (643)
                         ++.|+.-+-+|....|..+. +.....+.....-.......+++.+..-+..      ....++..++..|..+.+ 
T Consensus        87 ---ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr  163 (1233)
T KOG1824|consen   87 ---VENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSR  163 (1233)
T ss_pred             ---HHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHh
Confidence               22222222233333333222 2222222222222222233344544444432      233467777777665443 


Q ss_pred             CCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhc-CChHHHHHHHHHHHH
Q 006494          515 NQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKN-GTPKNKECATSVLLE  593 (643)
Q Consensus       515 ~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~-~s~~~ke~A~~~L~~  593 (643)
                      ..+--.. ...+....++--+.+....+...|+.+|..|+..- ++...  .+.+..|++=|.. .+...-.--..+|..
T Consensus       164 ~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~-~~~ly--~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~  239 (1233)
T KOG1824|consen  164 FGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSC-NRDLY--VELIEHLLKGLSNRTQMSATRTYIQCLAA  239 (1233)
T ss_pred             hcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhc-CHHHH--HHHHHHHHhccCCCCchHHHHHHHHHHHH
Confidence            2221111 33455666666666666678899999999998852 12222  2344444444432 222333334556667


Q ss_pred             hccCCHHHHHHHHHcCcHHHHHHHH---hhCCHHHHHHHHHHHHHhhh
Q 006494          594 LGLNNSYFILAALQYGVYEHLVEIT---RCGTNRGQRKANSLLQHMSK  638 (643)
Q Consensus       594 L~~~~~~~~~~~~~~g~i~~L~~ll---~~g~~~~k~~A~~lL~~l~~  638 (643)
                      +|+..+.+.-.- -..++|.+..+.   ...+++.+++....|..+-+
T Consensus       240 i~r~ag~r~~~h-~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~  286 (1233)
T KOG1824|consen  240 ICRQAGHRFGSH-LDKIVPLVADYCNKIEEDDDELREYCLQALESFLR  286 (1233)
T ss_pred             HHHHhcchhhcc-cchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHH
Confidence            776543321110 134678888887   67789999999998887654

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.46  E-value=0.52  Score=53.30  Aligned_cols=270  Identities=14%  Similarity=0.095  Sum_probs=160.3

Q ss_pred             HHHHHHHhhcCCCH-HHHHHHHHHHHHhhhhChhhHHHHHh-hCChHHHHHHhcC--CCHHHHHHHHHHHHhccc-Chhh
Q 006494          362 EICSLIQNLSSSQL-NIKRDSVMKIRMLSKENPDNRILIAN-NGGIRPLVQLLSY--PDSKIQEHTVTALLNLSL-DETN  436 (643)
Q Consensus       362 ~i~~Lv~~L~s~~~-~~~~~Al~~L~~La~~~~~~r~~i~~-~g~i~~Lv~lL~~--~~~~~~~~a~~~L~nLs~-~~~~  436 (643)
                      .+..|+.......+ .++..++..|+.++.+ -........ +.++-.++.-...  ++..++-.|..+|.|--. -..|
T Consensus       130 li~~lv~nv~~~~~~~~k~~slealGyice~-i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~n  208 (859)
T KOG1241|consen  130 LIVTLVSNVGEEQASMVKESSLEALGYICED-IDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKAN  208 (859)
T ss_pred             HHHHHHHhcccccchHHHHHHHHHHHHHHcc-CCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHh
Confidence            44455555544433 3677788999988843 333333222 2233334443332  366788889999988321 1111


Q ss_pred             HHHHHhc-CChHHHHHHHccCCHHHHHHHHHHHHHccc-cccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhc
Q 006494          437 KRHIARE-GAIPAIIEILQNGTNEARENSAAALFSLSM-LDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSI  514 (643)
Q Consensus       437 k~~i~~~-g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~-~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~  514 (643)
                      -..=.+. -.+..+++.-.+++.+++..|..+|..+.. ..+.-..-.....+..-+.-+++.++++...|+..=.++|.
T Consensus       209 F~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWstice  288 (859)
T KOG1241|consen  209 FNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICE  288 (859)
T ss_pred             hccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence            1111111 234445555567788899888888888753 22322211222234444555678888888877766665653


Q ss_pred             CC----------------CchHHHH---hcCcHHHHHHHhccCC-------hhhHHHHHHHHHHHhCChhhHHHHHhcCc
Q 006494          515 NQ----------------SNKSRAI---KAGIIPSLLKLLEDKA-------LGMVDEALSILQLLASHPEGRNEIGRLSF  568 (643)
Q Consensus       515 ~~----------------en~~~iv---~~G~v~~Lv~lL~~~~-------~~~~~~Al~iL~nLa~~~~~~~~i~~~g~  568 (643)
                      ..                +....+.   -.+++|.|+++|...+       -.....|-.+|.-++..       +....
T Consensus       289 EEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~-------~~D~I  361 (859)
T KOG1241|consen  289 EEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQC-------VGDDI  361 (859)
T ss_pred             HHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHH-------hcccc
Confidence            11                0111111   1478899999996521       12334444555444432       22345


Q ss_pred             HHHHHHHHh----cCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhhc
Q 006494          569 IETLVEIIK----NGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSKR  639 (643)
Q Consensus       569 i~~Lv~lL~----~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~~  639 (643)
                      ++..+.+++    +.+-+.++.|+.++..+-.+....+..-+..+++|.++.++.+.+--+|+-+.+.|-.+.++
T Consensus       362 v~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~  436 (859)
T KOG1241|consen  362 VPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADF  436 (859)
T ss_pred             hhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhh
Confidence            555555554    55667788899999888887766666666678999999999988889999999999888764

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.43  E-value=0.63  Score=52.22  Aligned_cols=263  Identities=14%  Similarity=0.109  Sum_probs=140.9

Q ss_pred             hHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCC--HHHHHHHHHHHHhcc-cChh
Q 006494          359 LIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPD--SKIQEHTVTALLNLS-LDET  435 (643)
Q Consensus       359 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~--~~~~~~a~~~L~nLs-~~~~  435 (643)
                      .+..+..+.+.|.+.++--..-|+..+.+..  +.+++..+..  -|+   ++|.+++  .-++..|+-+|+.|- ..++
T Consensus       109 ~klvin~iknDL~srn~~fv~LAL~~I~niG--~re~~ea~~~--DI~---KlLvS~~~~~~vkqkaALclL~L~r~spD  181 (938)
T KOG1077|consen  109 MKLVINSIKNDLSSRNPTFVCLALHCIANIG--SREMAEAFAD--DIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPD  181 (938)
T ss_pred             HHHHHHHHHhhhhcCCcHHHHHHHHHHHhhc--cHhHHHHhhh--hhH---HHHhCCcchHHHHHHHHHHHHHHHhcCcc
Confidence            3456667777888888888888999888875  3445544432  334   5665543  234444444444443 2222


Q ss_pred             hHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccc--cccchhhccCChHHHHHHcccC-------------Chh
Q 006494          436 NKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLD--ENRVMVGNLNGIPPLVNLLRYG-------------SIR  500 (643)
Q Consensus       436 ~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~--~~k~~i~~~g~i~~Lv~lL~s~-------------~~~  500 (643)
                         .+-..+....++++|.+.+..+...+...+-.|+...  +++..+..  ++..|.......             .+=
T Consensus       182 ---l~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~--avs~L~riv~~~~t~~qdYTyy~vP~PW  256 (938)
T KOG1077|consen  182 ---LVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPL--AVSRLSRIVVVVGTSLQDYTYYFVPAPW  256 (938)
T ss_pred             ---ccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHH--HHHHHHHHHhhcccchhhceeecCCChH
Confidence               1112356788888888777666666666666665322  23322211  222222222111             123


Q ss_pred             hHHHHHHHHHHhhc--CCCchHHHHhcCcHHHHHHHhcc--CChh-----hHHHHHHHHHHHhCChhhHHHHHhcCcHHH
Q 006494          501 GKKDAATALFNLSI--NQSNKSRAIKAGIIPSLLKLLED--KALG-----MVDEALSILQLLASHPEGRNEIGRLSFIET  571 (643)
Q Consensus       501 ~k~~A~~aL~nLs~--~~en~~~iv~~G~v~~Lv~lL~~--~~~~-----~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~  571 (643)
                      .....+.+|.+.=.  ++..+.++.+  ++..++....+  ....     .+...+-=.-+|+.+-+.-..+.. .++..
T Consensus       257 L~vKl~rlLq~~p~~~D~~~r~~l~e--vl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~-~~~~~  333 (938)
T KOG1077|consen  257 LQVKLLRLLQIYPTPEDPSTRARLNE--VLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS-RAVNQ  333 (938)
T ss_pred             HHHHHHHHHHhCCCCCCchHHHHHHH--HHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH-HHHHH
Confidence            34455555555532  1222333322  23333333321  1111     122233334455555333333332 46788


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHh-hCCHHHHHHHHHHHHHhhhc
Q 006494          572 LVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITR-CGTNRGQRKANSLLQHMSKR  639 (643)
Q Consensus       572 Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~-~g~~~~k~~A~~lL~~l~~~  639 (643)
                      |..+|.+.....|..|+..++.||+....  ..++... ...++..+. ..+.-++++|..+|..|++.
T Consensus       334 Lg~fls~rE~NiRYLaLEsm~~L~ss~~s--~davK~h-~d~Ii~sLkterDvSirrravDLLY~mcD~  399 (938)
T KOG1077|consen  334 LGQFLSHRETNIRYLALESMCKLASSEFS--IDAVKKH-QDTIINSLKTERDVSIRRRAVDLLYAMCDV  399 (938)
T ss_pred             HHHHhhcccccchhhhHHHHHHHHhccch--HHHHHHH-HHHHHHHhccccchHHHHHHHHHHHHHhch
Confidence            88888888888888888888888887432  2222222 455555555 55777888888888888764

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.38  E-value=1.1  Score=50.50  Aligned_cols=218  Identities=15%  Similarity=0.199  Sum_probs=147.9

Q ss_pred             hHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChh-hHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcc-cChhh
Q 006494          359 LIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPD-NRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLS-LDETN  436 (643)
Q Consensus       359 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~-~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs-~~~~~  436 (643)
                      .++-.+-++.+|+++-+-+|.+|+-.+..+.-..++ .|.      ++|.|+.-|..+|+.+|..|+.+++.|+ .++.|
T Consensus       142 ARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~------~FprL~EkLeDpDp~V~SAAV~VICELArKnPkn  215 (877)
T KOG1059|consen  142 ARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRP------CFPRLVEKLEDPDPSVVSAAVSVICELARKNPQN  215 (877)
T ss_pred             hHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhh------hHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcc
Confidence            356677888999999999999998877655433333 343      4588999999999999999999999998 56666


Q ss_pred             HHHHHhcCChHHHHHHHccC-CHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCC-hhhHHHHHHHHH--Hh
Q 006494          437 KRHIAREGAIPAIIEILQNG-TNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGS-IRGKKDAATALF--NL  512 (643)
Q Consensus       437 k~~i~~~g~i~~Lv~lL~~~-~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~-~~~k~~A~~aL~--nL  512 (643)
                      --.+     -|.+.++|.+. +.-..........+|+-.+.   .+| ...+++|..++.+.. ......++.++.  |+
T Consensus       216 yL~L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplEP---RLg-KKLieplt~li~sT~AmSLlYECvNTVVa~s~  286 (877)
T KOG1059|consen  216 YLQL-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEP---RLG-KKLIEPITELMESTVAMSLLYECVNTVVAVSM  286 (877)
T ss_pred             cccc-----cHHHHHHHhccCCCeehHHHHHHHhhccccCc---hhh-hhhhhHHHHHHHhhHHHHHHHHHHHHheeehh
Confidence            5433     35666777543 22233334555566654332   111 246799999998764 234444444433  44


Q ss_pred             hcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC-hhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHH
Q 006494          513 SINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH-PEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVL  591 (643)
Q Consensus       513 s~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L  591 (643)
                      +....+....+.. +++.|-.++.+.++.+.-.++-++..+... +....+.     -..++..|.+.++.+|-.|+..|
T Consensus       287 s~g~~d~~asiqL-CvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~-----kdlIlrcL~DkD~SIRlrALdLl  360 (877)
T KOG1059|consen  287 SSGMSDHSASIQL-CVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAH-----KDLILRCLDDKDESIRLRALDLL  360 (877)
T ss_pred             ccCCCCcHHHHHH-HHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHh-----HHHHHHHhccCCchhHHHHHHHH
Confidence            4444455555544 678888888888888888788777777663 4333222     34567888889999999999999


Q ss_pred             HHhccC
Q 006494          592 LELGLN  597 (643)
Q Consensus       592 ~~L~~~  597 (643)
                      ..+...
T Consensus       361 ~gmVsk  366 (877)
T KOG1059|consen  361 YGMVSK  366 (877)
T ss_pred             HHHhhh
Confidence            887764

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=95.34  E-value=0.065  Score=51.74  Aligned_cols=121  Identities=17%  Similarity=0.245  Sum_probs=89.2

Q ss_pred             CHHHHHHHHHHHHhcccChhhHHHHHh----------------cCChHHHHHHHccC------CHHHHHHHHHHHHHccc
Q 006494          416 DSKIQEHTVTALLNLSLDETNKRHIAR----------------EGAIPAIIEILQNG------TNEARENSAAALFSLSM  473 (643)
Q Consensus       416 ~~~~~~~a~~~L~nLs~~~~~k~~i~~----------------~g~i~~Lv~lL~~~------~~~~~~~Aa~~L~~Ls~  473 (643)
                      +......++.+|.||+..+.....+..                ..++..|+..+..|      ...-....+.++.|+|.
T Consensus         8 ~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~   87 (192)
T PF04063_consen    8 KSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ   87 (192)
T ss_pred             CcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC
Confidence            344556678888899888777764441                12677777777552      23456788999999999


Q ss_pred             cccccchhhcc--CC--hHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHHHhc---CcHHHHHHHhc
Q 006494          474 LDENRVMVGNL--NG--IPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKA---GIIPSLLKLLE  536 (643)
Q Consensus       474 ~~~~k~~i~~~--g~--i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~---G~v~~Lv~lL~  536 (643)
                      ..+.|..+.+.  +.  +..|+.++.+.+.--+.-++.+|.|+|...+.+..+...   +++|.|+--|.
T Consensus        88 ~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa  157 (192)
T PF04063_consen   88 LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA  157 (192)
T ss_pred             CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence            99999999874  34  677888777777777788899999999999998888773   45555555444

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.30  E-value=0.012  Score=56.99  Aligned_cols=53  Identities=19%  Similarity=0.465  Sum_probs=46.8

Q ss_pred             CcccCccCcccccCCe----ecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCc
Q 006494          271 HEFLCPVTLEIMTDPV----IVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAP  324 (643)
Q Consensus       271 ~~f~Cpi~~~~m~dPv----~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~p  324 (643)
                      ..|.||+|.+.+++.+    +-+|||.++..|.++.+.. ...||+|+.++...++++
T Consensus       220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~-D~v~pv~d~plkdrdiI~  276 (303)
T KOG3039|consen  220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRK-DMVDPVTDKPLKDRDIIG  276 (303)
T ss_pred             cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccc-cccccCCCCcCcccceEe
Confidence            6799999999999854    3489999999999999986 678999999999888775

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=95.25  E-value=0.38  Score=48.15  Aligned_cols=192  Identities=16%  Similarity=0.202  Sum_probs=127.1

Q ss_pred             CHHHHHHHHHHHHHhhhhChhhHHHHHh-hCChHHHHHH-------hcCCC-----HHHHHHHHHHHHhcccChhhHHHH
Q 006494          374 QLNIKRDSVMKIRMLSKENPDNRILIAN-NGGIRPLVQL-------LSYPD-----SKIQEHTVTALLNLSLDETNKRHI  440 (643)
Q Consensus       374 ~~~~~~~Al~~L~~La~~~~~~r~~i~~-~g~i~~Lv~l-------L~~~~-----~~~~~~a~~~L~nLs~~~~~k~~i  440 (643)
                      +++.|..|+.+|..--...++-...+-. .|.+..|+.=       ++.+.     ..-..+|+..|--++.+++.|..+
T Consensus         8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F   87 (262)
T PF04078_consen    8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF   87 (262)
T ss_dssp             SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred             CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence            5677888888776543222333333322 4666655442       22221     123456677777778999999999


Q ss_pred             HhcCChHHHHHHHccCC-----HHHHHHHHHHHHHcccccc--ccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhh
Q 006494          441 AREGAIPAIIEILQNGT-----NEARENSAAALFSLSMLDE--NRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLS  513 (643)
Q Consensus       441 ~~~g~i~~Lv~lL~~~~-----~~~~~~Aa~~L~~Ls~~~~--~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs  513 (643)
                      .++...--|..+|...+     +..|..+.+++..|...++  .-..+...+.+|..+..+..|+.-.|..|..++..+-
T Consensus        88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL  167 (262)
T PF04078_consen   88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL  167 (262)
T ss_dssp             HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred             HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            99887767777776432     4578899999999986544  4555667899999999999999999999999998876


Q ss_pred             cCCCch-------HHHHh-cCcHHHHHHHh-ccCChhhHHHHHHHHHHHhCChhhHHHHHh
Q 006494          514 INQSNK-------SRAIK-AGIIPSLLKLL-EDKALGMVDEALSILQLLASHPEGRNEIGR  565 (643)
Q Consensus       514 ~~~en~-------~~iv~-~G~v~~Lv~lL-~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~  565 (643)
                      .++..-       .++-. ..++..++.-+ .++++.+....+.+-..|+.++.++.++..
T Consensus       168 ~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~  228 (262)
T PF04078_consen  168 LDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQ  228 (262)
T ss_dssp             HSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHH
T ss_pred             cchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHH
Confidence            655432       22222 23444444444 447889999999999999999999998864

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=95.07  E-value=0.07  Score=46.97  Aligned_cols=71  Identities=20%  Similarity=0.287  Sum_probs=59.8

Q ss_pred             HHHHHHHHHhhc-CCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhc
Q 006494          360 IEEICSLIQNLS-SSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNL  430 (643)
Q Consensus       360 ~~~i~~Lv~~L~-s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nL  430 (643)
                      -..+..|++.|. +.++.+..-|+..|..+.+..|..|..+.+.|+-..+..++.++|++++..|+.++-.+
T Consensus        42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl  113 (119)
T PF11698_consen   42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL  113 (119)
T ss_dssp             GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            367889999994 45667777899999999999999999998999999999999999999999999887654

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=95.07  E-value=0.044  Score=41.23  Aligned_cols=55  Identities=24%  Similarity=0.234  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHc
Q 006494          417 SKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSL  471 (643)
Q Consensus       417 ~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~L  471 (643)
                      |.++..|+.+|.+++........-.....++.|+.+|++.+..+|.+|+.+|.+|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            5688999999999886655444445556899999999998889999999999864

...

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=95.03  E-value=0.03  Score=42.14  Aligned_cols=55  Identities=25%  Similarity=0.212  Sum_probs=46.0

Q ss_pred             hhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHH
Q 006494          499 IRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLL  553 (643)
Q Consensus       499 ~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nL  553 (643)
                      +.++..|+.+|.+++........-....+++.|+.+|.++++.+...|+.+|.+|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            3578899999999887666655556678999999999988889999999999875

...

>KOG2979 consensus Protein involved in DNA repair [General function prediction only]

Probab=94.99  E-value=0.02  Score=56.30  Aligned_cols=46  Identities=28%  Similarity=0.483  Sum_probs=38.4

Q ss_pred             CcccCccCcccccCCee-cCCcccccHHhHHHHHhcC-CCCCCCCCcc
Q 006494          271 HEFLCPVTLEIMTDPVI-VATGQTYERESIQRWLNSN-HKTCPKTGQI  316 (643)
Q Consensus       271 ~~f~Cpi~~~~m~dPv~-~~~g~t~~r~~I~~w~~~~-~~~cP~~~~~  316 (643)
                      -+++|||+......||+ ..|||.|+|..|+..+... ...||+-+-.
T Consensus       175 fs~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~  222 (262)
T KOG2979|consen  175 FSNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE  222 (262)
T ss_pred             hcccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence            46899999999999998 4799999999999999852 3459995544

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.97  E-value=0.014  Score=56.63  Aligned_cols=38  Identities=29%  Similarity=0.494  Sum_probs=33.5

Q ss_pred             CCCCcccCccCcccccCCeecCCcccccHHhHHHHHhc
Q 006494          268 LVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNS  305 (643)
Q Consensus       268 ~~p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~  305 (643)
                      .+-+.-+|.+|++-.+|||+.+.||.|||+||.+++-.
T Consensus        39 siK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~ila   76 (303)
T KOG3039|consen   39 SIKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYILA   76 (303)
T ss_pred             ccCCcceeeeecccccCCccCCCCeeeeHHHHHHHHHH
Confidence            34455589999999999999999999999999999874

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=94.83  E-value=0.64  Score=52.38  Aligned_cols=150  Identities=14%  Similarity=0.123  Sum_probs=102.9

Q ss_pred             hHHHHHHcccCChhhHHHHHHHHHHhhcCCCch---HHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHH
Q 006494          487 IPPLVNLLRYGSIRGKKDAATALFNLSINQSNK---SRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEI  563 (643)
Q Consensus       487 i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~---~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i  563 (643)
                      +...+..|++.++.++..|+..+..|+.--.++   ..|...|+  .|.+.|....+++.-..+.+++.++...+.....
T Consensus       801 ~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEvLgsILgAikaI~nvigm~km~  878 (1172)
T KOG0213|consen  801 CSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMT  878 (1172)
T ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHHHhccccccC
Confidence            445566788999999999999998887533332   22223443  3677787777777766666666665432211111


Q ss_pred             H-hcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494          564 G-RLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK  638 (643)
Q Consensus       564 ~-~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~  638 (643)
                      - -.+.+|.|..+|++..+.++++++..+..+|..++++.-.-.=.-+---|++++...+...++.|...+-.+.+
T Consensus       879 pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Iak  954 (1172)
T KOG0213|consen  879 PPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAK  954 (1172)
T ss_pred             CChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            0 13789999999999999999999999999999988754321111233346677778888899999888776654

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=94.81  E-value=0.71  Score=53.23  Aligned_cols=140  Identities=19%  Similarity=0.242  Sum_probs=99.8

Q ss_pred             HHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHH
Q 006494          362 EICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIA  441 (643)
Q Consensus       362 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~  441 (643)
                      -.+.+++.+.+.|.+.++-.-.-|...++.+|+-...     ++..+.+=|.++++.+|..|+++|..+-..+     + 
T Consensus        56 Lf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL-----avNti~kDl~d~N~~iR~~AlR~ls~l~~~e-----l-  124 (757)
T COG5096          56 LFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL-----AVNTIQKDLQDPNEEIRGFALRTLSLLRVKE-----L-  124 (757)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH-----HHHHHHhhccCCCHHHHHHHHHHHHhcChHH-----H-
Confidence            4555566666666666555555566667666522211     3566777888899999999999887653221     1 


Q ss_pred             hcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhc
Q 006494          442 REGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSI  514 (643)
Q Consensus       442 ~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~  514 (643)
                      -..+++++.+.+.++++.+|.+|+-+++++=..  .+....+.|.+..+..++.+.++.++.+|+.+|..+.-
T Consensus       125 ~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l--d~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~  195 (757)
T COG5096         125 LGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL--DKDLYHELGLIDILKELVADSDPIVIANALASLAEIDP  195 (757)
T ss_pred             HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc--CHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence            123678888999999999999999999887432  33445567788888899989999999999999988754

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=94.77  E-value=0.91  Score=47.47  Aligned_cols=211  Identities=19%  Similarity=0.184  Sum_probs=113.0

Q ss_pred             HHHhcCCCHHHHHHHHHHHHhcccChhhHHHHH--hcCChHHHHHHHccCCHHHHHHHHHHHHHcccc---ccccchhhc
Q 006494          409 VQLLSYPDSKIQEHTVTALLNLSLDETNKRHIA--REGAIPAIIEILQNGTNEARENSAAALFSLSML---DENRVMVGN  483 (643)
Q Consensus       409 v~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~--~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~---~~~k~~i~~  483 (643)
                      +..+.......++.++..+.++....-....+.  ..-.+..+.+.++.|..+-+..|+.++.-|+..   ......+. 
T Consensus        49 Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~-  127 (309)
T PF05004_consen   49 IDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIF-  127 (309)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHH-
Confidence            334444456777777777766543322222222  223577888888888766666677766666543   12222332 


Q ss_pred             cCChHHHHHHcccCCh--hhHHHHHHHHHHhhcCCC-chHHHHh-cCcHHHHHHH--hcc-C---------ChhhHHHHH
Q 006494          484 LNGIPPLVNLLRYGSI--RGKKDAATALFNLSINQS-NKSRAIK-AGIIPSLLKL--LED-K---------ALGMVDEAL  547 (643)
Q Consensus       484 ~g~i~~Lv~lL~s~~~--~~k~~A~~aL~nLs~~~e-n~~~iv~-~G~v~~Lv~l--L~~-~---------~~~~~~~Al  547 (643)
                      ....|.|...+.+++.  ..+..++.+|.-++.... .-..+.+ ...+..+...  +.. +         ++.++..|+
T Consensus       128 ~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL  207 (309)
T PF05004_consen  128 EELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAAL  207 (309)
T ss_pred             HHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHH
Confidence            2466888888877643  444455556665554211 1111110 1223322111  221 1         235777777


Q ss_pred             HHHHHHhCC-hhh-HHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHH---HHcCcHHHHHHHHhhC
Q 006494          548 SILQLLASH-PEG-RNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAA---LQYGVYEHLVEITRCG  621 (643)
Q Consensus       548 ~iL~nLa~~-~~~-~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~---~~~g~i~~L~~ll~~g  621 (643)
                      ..-+-|... +.. ..... ...++.|+.+|.+.+..+|-.|-.+|.-|...........   -...++..|..|...+
T Consensus       208 ~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~~~~~~~~~~l~~~l~~La~dS  285 (309)
T PF05004_consen  208 SAWALLLTTLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLYELARDHEEDFLYEDMEELLEQLRELATDS  285 (309)
T ss_pred             HHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHHHHhc
Confidence            666666655 332 22222 3579999999999999999888777766543222100000   1123456666666554

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=94.75  E-value=3.6  Score=48.34  Aligned_cols=238  Identities=15%  Similarity=0.141  Sum_probs=144.8

Q ss_pred             HHhhCChHHHHHHhcCC-----CHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHHHHc----cCC----HHHHHHHH
Q 006494          399 IANNGGIRPLVQLLSYP-----DSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQ----NGT----NEARENSA  465 (643)
Q Consensus       399 i~~~g~i~~Lv~lL~~~-----~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~----~~~----~~~~~~Aa  465 (643)
                      +.+.|++..++.++.+-     +.+.....+..|...+.-..||..+.+.|+++.|++.|.    .+.    .+.-+...
T Consensus       113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL  192 (802)
T PF13764_consen  113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLL  192 (802)
T ss_pred             hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHH
Confidence            45679999999988752     334555566666666778999999999999999999885    222    34444444


Q ss_pred             HHHHHccc---cccccchhh----------ccCChHHHHHHcccC----ChhhHHHHHHHHHHhhcCCCchHHH-HhcCc
Q 006494          466 AALFSLSM---LDENRVMVG----------NLNGIPPLVNLLRYG----SIRGKKDAATALFNLSINQSNKSRA-IKAGI  527 (643)
Q Consensus       466 ~~L~~Ls~---~~~~k~~i~----------~~g~i~~Lv~lL~s~----~~~~k~~A~~aL~nLs~~~en~~~i-v~~G~  527 (643)
                      .++-.|..   .+.......          ...-+..|++.+.+.    ++......+.+|-+|+...+.+... ++.  
T Consensus       193 ~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--  270 (802)
T PF13764_consen  193 EIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--  270 (802)
T ss_pred             HHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--
Confidence            44443321   111111111          112366777776654    4667777788888998765554333 321  


Q ss_pred             HHHHHHHh--ccCChhhHHHHHHHHHHHhCC-------hhhHHHHHhcCcHHHHHHHHhc--------CChHHHH-----
Q 006494          528 IPSLLKLL--EDKALGMVDEALSILQLLASH-------PEGRNEIGRLSFIETLVEIIKN--------GTPKNKE-----  585 (643)
Q Consensus       528 v~~Lv~lL--~~~~~~~~~~Al~iL~nLa~~-------~~~~~~i~~~g~i~~Lv~lL~~--------~s~~~ke-----  585 (643)
                      +.+.+++=  ......--...+..++.++..       ..-+..|++.|++...+.+|..        .+++.++     
T Consensus       271 F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~p  350 (802)
T PF13764_consen  271 FKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRP  350 (802)
T ss_pred             HHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCC
Confidence            22222211  111111112235555555543       2358888999999988888864        3444554     


Q ss_pred             ---HHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhC-CHHHHHHHHHHHHHhhhc
Q 006494          586 ---CATSVLLELGLNNSYFILAALQYGVYEHLVEITRCG-TNRGQRKANSLLQHMSKR  639 (643)
Q Consensus       586 ---~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g-~~~~k~~A~~lL~~l~~~  639 (643)
                         .++.+|.-||.+....... +..++++.|..|-+.. +..+-..|..+|..|.+.
T Consensus       351 sLp~iL~lL~GLa~gh~~tQ~~-~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~  407 (802)
T PF13764_consen  351 SLPYILRLLRGLARGHEPTQLL-IAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAEN  407 (802)
T ss_pred             cHHHHHHHHHHHHhcCHHHHHH-HHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcC
Confidence               4778888899876654443 5567787777776544 566777888888888764

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.60  E-value=0.49  Score=52.71  Aligned_cols=219  Identities=13%  Similarity=0.141  Sum_probs=140.9

Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhCh------hhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhccc-
Q 006494          360 IEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENP------DNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSL-  432 (643)
Q Consensus       360 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~------~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~-  432 (643)
                      +......++.++..+.++|..|+..+...++..+      .+...+.+ .+...++..+.+....++..|..+|..+-. 
T Consensus       233 ~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D-~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~v  311 (823)
T KOG2259|consen  233 KACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKD-AAFSSVCRAVRDRSLSVRVEAAKALGEFEQV  311 (823)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHH-HHHHHHHHHHhcCceeeeehHHHHhchHHHh
Confidence            4567888899999899999999887776655442      11222222 356678888888888888888888765431 


Q ss_pred             ChhhHHHHHhcCChHHHHHHHccCCHHHHHHHH-HHHHHc--c------------ccccccchhhccCChHHHHHHcccC
Q 006494          433 DETNKRHIAREGAIPAIIEILQNGTNEARENSA-AALFSL--S------------MLDENRVMVGNLNGIPPLVNLLRYG  497 (643)
Q Consensus       433 ~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa-~~L~~L--s------------~~~~~k~~i~~~g~i~~Lv~lL~s~  497 (643)
                      +++.-.+-.+..    ++.-++..  ....... ....+.  |            .+++.-..|..+|+--+++.=|.++
T Consensus       312 See~i~QTLdKK----lms~lRRk--r~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDE  385 (823)
T KOG2259|consen  312 SEEIIQQTLDKK----LMSRLRRK--RTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDE  385 (823)
T ss_pred             HHHHHHHHHHHH----Hhhhhhhh--hhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHH
Confidence            111111111111    11111100  0001111 111111  0            1233455677889989999988888


Q ss_pred             ChhhHHHHHHHHHHhhcC-CCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHH
Q 006494          498 SIRGKKDAATALFNLSIN-QSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEII  576 (643)
Q Consensus       498 ~~~~k~~A~~aL~nLs~~-~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL  576 (643)
                      -.+++++|+..++.|+.+ +....+     ++..|+.++.++...+...|+.+|..++.+-..     +..-++.+++-|
T Consensus       386 f~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i-----~eeql~~il~~L  455 (823)
T KOG2259|consen  386 FYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDEIEVVRLKAIFALTMISVHLAI-----REEQLRQILESL  455 (823)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccHHHHHHHHHHHHHHHHHHHhee-----cHHHHHHHHHHH
Confidence            889999999999999874 444444     467799999888888999999999999887322     334577888888


Q ss_pred             hcCChHHHHHHHHHHHHhc
Q 006494          577 KNGTPKNKECATSVLLELG  595 (643)
Q Consensus       577 ~~~s~~~ke~A~~~L~~L~  595 (643)
                      .+.++++|+..-..|.+.-
T Consensus       456 ~D~s~dvRe~l~elL~~~~  474 (823)
T KOG2259|consen  456 EDRSVDVREALRELLKNAR  474 (823)
T ss_pred             HhcCHHHHHHHHHHHHhcC
Confidence            8888888887766654433

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=94.59  E-value=0.17  Score=43.31  Aligned_cols=64  Identities=28%  Similarity=0.336  Sum_probs=55.0

Q ss_pred             HHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcC--CCHHHHHHHHHHHHhccc-ChhhHHHHHh
Q 006494          379 RDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSY--PDSKIQEHTVTALLNLSL-DETNKRHIAR  442 (643)
Q Consensus       379 ~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~--~~~~~~~~a~~~L~nLs~-~~~~k~~i~~  442 (643)
                      ...++.|.+++..++.++..+.+.|+++.++.....  .+|-+++.|+.++.||.. +++|+..|.+
T Consensus         4 ~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~   70 (102)
T PF09759_consen    4 RDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ   70 (102)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            455778899999999999999999999999998764  478999999999999985 5788887763

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=94.55  E-value=0.015  Score=61.15  Aligned_cols=44  Identities=23%  Similarity=0.515  Sum_probs=36.8

Q ss_pred             cccCccCcccccCCe----ecCCcccccHHhHHHHHhcCCCCCCCCCcccC
Q 006494          272 EFLCPVTLEIMTDPV----IVATGQTYERESIQRWLNSNHKTCPKTGQILD  318 (643)
Q Consensus       272 ~f~Cpi~~~~m~dPv----~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~  318 (643)
                      --+||+|++-|-+-|    ++.|.|+|.-.|+.+|+..   +||+||--..
T Consensus       175 LPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~---scpvcR~~q~  222 (493)
T KOG0804|consen  175 LPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDS---SCPVCRYCQS  222 (493)
T ss_pred             CCCcchhHhhcCccccceeeeecccccchHHHhhcccC---cChhhhhhcC
Confidence            348999999998876    4689999999999999864   7898876554

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.51  E-value=0.025  Score=59.08  Aligned_cols=43  Identities=26%  Similarity=0.615  Sum_probs=38.5

Q ss_pred             cccCccCcccccC---CeecCCcccccHHhHHHHHhcCC--CCCCCCC
Q 006494          272 EFLCPVTLEIMTD---PVIVATGQTYERESIQRWLNSNH--KTCPKTG  314 (643)
Q Consensus       272 ~f~Cpi~~~~m~d---Pv~~~~g~t~~r~~I~~w~~~~~--~~cP~~~  314 (643)
                      -|.|||..+--+|   |+.+.|||..++.+|.+-..+|.  ..||.|-
T Consensus       334 vF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP  381 (394)
T KOG2817|consen  334 VFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCP  381 (394)
T ss_pred             eeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCC
Confidence            3899999998886   99999999999999999999887  6799883

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.48  E-value=1.4  Score=50.41  Aligned_cols=105  Identities=18%  Similarity=0.183  Sum_probs=50.6

Q ss_pred             HHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhc---CcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHH---
Q 006494          532 LKLLEDKALGMVDEALSILQLLASHPEGRNEIGRL---SFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAA---  605 (643)
Q Consensus       532 v~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~---g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~---  605 (643)
                      +++|..++++..+....+|+.++.+.+.-..+..+   .+|..+..+.  .+...++.|+.+|...-.+...+..-+   
T Consensus       258 LriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~--~~~~LrvlainiLgkFL~n~d~NirYvaLn  335 (866)
T KOG1062|consen  258 LRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIR--SNSGLRVLAINILGKFLLNRDNNIRYVALN  335 (866)
T ss_pred             HHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhcc--CCchHHHHHHHHHHHHhcCCccceeeeehh
Confidence            44455556666666677777777653321111111   2333333322  223345555555555444332211110   


Q ss_pred             -----HH--cCc----HHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494          606 -----LQ--YGV----YEHLVEITRCGTNRGQRKANSLLQHMSK  638 (643)
Q Consensus       606 -----~~--~g~----i~~L~~ll~~g~~~~k~~A~~lL~~l~~  638 (643)
                           ++  ..+    -..+++-+.+.++-.|++|.+++..|-+
T Consensus       336 ~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn  379 (866)
T KOG1062|consen  336 MLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVN  379 (866)
T ss_pred             hHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhc
Confidence                 00  001    2234455666777888888888877654

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]

Probab=94.32  E-value=0.016  Score=60.35  Aligned_cols=35  Identities=20%  Similarity=0.406  Sum_probs=31.1

Q ss_pred             CCcccCccCcccccCCeecCCcccccHHhHHHHHh
Q 006494          270 PHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLN  304 (643)
Q Consensus       270 p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~  304 (643)
                      .+++.||||...++||+|++|||..|+.|-..-+-
T Consensus         2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~   36 (699)
T KOG4367|consen    2 EEELKCPVCGSFYREPIILPCSHNLCQACARNILV   36 (699)
T ss_pred             cccccCceehhhccCceEeecccHHHHHHHHhhcc
Confidence            36899999999999999999999999999775543

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.19  E-value=0.78  Score=52.11  Aligned_cols=143  Identities=15%  Similarity=0.181  Sum_probs=98.4

Q ss_pred             HHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHH
Q 006494          362 EICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIA  441 (643)
Q Consensus       362 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~  441 (643)
                      ..+.+++.+...|.+...-.---+.+.++..++..     .+++..+++=..++++.++..|++.+.-+-.+.-.     
T Consensus        50 lF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a-----~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~i~-----  119 (734)
T KOG1061|consen   50 LFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLA-----ILAVNTFLKDCEDPNPLIRALALRTMGCLRVDKIT-----  119 (734)
T ss_pred             hhHHHHhhcccCCchHHHHHHHHHHHhhccCchHH-----HhhhhhhhccCCCCCHHHHHHHhhceeeEeehHHH-----
Confidence            45555666655554433333334445554444322     34566677777788999999998887665432211     


Q ss_pred             hcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCC
Q 006494          442 REGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQS  517 (643)
Q Consensus       442 ~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~e  517 (643)
                       .....++.+.++++++.+|..++....++=  +.+.......|.++.|-+++.+.++.+..+|+.+|..+...+.
T Consensus       120 -ey~~~Pl~~~l~d~~~yvRktaa~~vakl~--~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~  192 (734)
T KOG1061|consen  120 -EYLCDPLLKCLKDDDPYVRKTAAVCVAKLF--DIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHP  192 (734)
T ss_pred             -HHHHHHHHHhccCCChhHHHHHHHHHHHhh--cCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCC
Confidence             125678889999999999987777777663  3455556668999999999998899999999999999986444

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.18  E-value=1.1  Score=53.19  Aligned_cols=228  Identities=16%  Similarity=0.178  Sum_probs=136.4

Q ss_pred             CCCHHHHHHHHHHHHHhhhhChhhHHHHHhh--CChHHHHHHhcCCCHHHHHHHHHHHHhccc--ChhhHHHHHhcCChH
Q 006494          372 SSQLNIKRDSVMKIRMLSKENPDNRILIANN--GGIRPLVQLLSYPDSKIQEHTVTALLNLSL--DETNKRHIAREGAIP  447 (643)
Q Consensus       372 s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~--g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~--~~~~k~~i~~~g~i~  447 (643)
                      +.+..+|.++-+.|..++.. +.........  ..-..|...+++.+...+...+.+|..|-.  +.+....+..  .|+
T Consensus       665 ~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k--~I~  741 (1176)
T KOG1248|consen  665 SSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPK--LIP  741 (1176)
T ss_pred             cccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHH--HHH
Confidence            45788999999999988854 3333222211  122334445555556666666666655532  2233444333  355


Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHccc----cccccchhhccCChHHHHHHcccC--ChhhHHHH--HHHHHHhhcCCCch
Q 006494          448 AIIEILQNGTNEARENSAAALFSLSM----LDENRVMVGNLNGIPPLVNLLRYG--SIRGKKDA--ATALFNLSINQSNK  519 (643)
Q Consensus       448 ~Lv~lL~~~~~~~~~~Aa~~L~~Ls~----~~~~k~~i~~~g~i~~Lv~lL~s~--~~~~k~~A--~~aL~nLs~~~en~  519 (643)
                      -++-.++..+...|.+|-.+|..+..    .+...+.  ....|...+..+..|  .......|  +.++..+...   -
T Consensus       742 EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e---~  816 (1176)
T KOG1248|consen  742 EVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP--ASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQE---F  816 (1176)
T ss_pred             HHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc--hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH---H
Confidence            55555577788999999999998862    1111111  123667777777655  22222222  3444444432   2


Q ss_pred             HHHHhc----CcHHHHHHHhccCChhhHHHHHHHHHHHhCC-hhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHh
Q 006494          520 SRAIKA----GIIPSLLKLLEDKALGMVDEALSILQLLASH-PEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLEL  594 (643)
Q Consensus       520 ~~iv~~----G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L  594 (643)
                      ..+++.    +.+..+...|.+.++++...|+..+..++.. |+..-.-.....++.+..++++.....+...-..|-.|
T Consensus       817 ~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekL  896 (1176)
T KOG1248|consen  817 KNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKL  896 (1176)
T ss_pred             hccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            222333    3445555556678899999999999999886 55443333345788999999888888888888888888


Q ss_pred             ccC-CHHHHHHHHH
Q 006494          595 GLN-NSYFILAALQ  607 (643)
Q Consensus       595 ~~~-~~~~~~~~~~  607 (643)
                      ++. +.+.......
T Consensus       897 irkfg~~eLe~~~p  910 (1176)
T KOG1248|consen  897 IRKFGAEELESFLP  910 (1176)
T ss_pred             HHHhCHHHHHhhCH
Confidence            864 3344444433

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=94.12  E-value=3.1  Score=45.91  Aligned_cols=264  Identities=9%  Similarity=0.025  Sum_probs=139.5

Q ss_pred             HhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHh----cCC-CHHHHHHHHHHHHhcccChhhHHHHHh
Q 006494          368 QNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLL----SYP-DSKIQEHTVTALLNLSLDETNKRHIAR  442 (643)
Q Consensus       368 ~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL----~~~-~~~~~~~a~~~L~nLs~~~~~k~~i~~  442 (643)
                      +-|.+..+.....|...+..++...       .-.|..|-|...+    ..+ ....+..++.++.+.+....-...+..
T Consensus       101 ~aL~s~epr~~~~Aaql~aaIA~~E-------lp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~  173 (858)
T COG5215         101 RALKSPEPRFCTMAAQLLAAIARME-------LPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQM  173 (858)
T ss_pred             HHhcCCccHHHHHHHHHHHHHHHhh-------CccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHH
Confidence            4455555555566666666555321       1134444444433    333 345677888999998765544444443


Q ss_pred             cC-C-hHHHHHHHccC-CHHHHHHHHHHHHH-ccccccccchhhccC-ChHHHHHHcccCChhhHHHHHHHHHHhhc-CC
Q 006494          443 EG-A-IPAIIEILQNG-TNEARENSAAALFS-LSMLDENRVMVGNLN-GIPPLVNLLRYGSIRGKKDAATALFNLSI-NQ  516 (643)
Q Consensus       443 ~g-~-i~~Lv~lL~~~-~~~~~~~Aa~~L~~-Ls~~~~~k~~i~~~g-~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~-~~  516 (643)
                      .+ + +..+..-++++ +..+|..|..+|.+ |-+...+-..=.+.+ .+......-+..+.+++..|..+|..+-. +-
T Consensus       174 sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY  253 (858)
T COG5215         174 SNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYY  253 (858)
T ss_pred             hhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHH
Confidence            22 2 33333455665 56778888888887 543333222222222 22333444445566777777777665543 33


Q ss_pred             CchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC-hhhHHHHH----------------hcCcHHHHHHHHhc-
Q 006494          517 SNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH-PEGRNEIG----------------RLSFIETLVEIIKN-  578 (643)
Q Consensus       517 en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~-~~~~~~i~----------------~~g~i~~Lv~lL~~-  578 (643)
                      ..-.-.++.-......+.+++++.++.-.|+..-..+|.. .++.-.+.                -.+++|.|+.+|.. 
T Consensus       254 ~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q  333 (858)
T COG5215         254 KFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQ  333 (858)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhc
Confidence            3333334443444445555666666666665555444432 11111110                02355666666542 


Q ss_pred             --------------------------------------------CChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHH
Q 006494          579 --------------------------------------------GTPKNKECATSVLLELGLNNSYFILAALQYGVYEHL  614 (643)
Q Consensus       579 --------------------------------------------~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L  614 (643)
                                                                  .+-..++.|+.++..+-.+..+.+..-.-..++|.+
T Consensus       334 ~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i  413 (858)
T COG5215         334 GEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGI  413 (858)
T ss_pred             CCCccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHH
Confidence                                                        233445556666666555543333333334567777


Q ss_pred             HHHHhhCCHHHHHHHHHHHHHhhh
Q 006494          615 VEITRCGTNRGQRKANSLLQHMSK  638 (643)
Q Consensus       615 ~~ll~~g~~~~k~~A~~lL~~l~~  638 (643)
                      ...+.+..-.+|..+++.+-.+..
T Consensus       414 ~n~m~D~~l~vk~ttAwc~g~iad  437 (858)
T COG5215         414 ENEMSDSCLWVKSTTAWCFGAIAD  437 (858)
T ss_pred             HHhcccceeehhhHHHHHHHHHHH
Confidence            777777777888888888877754

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.09  E-value=2.3  Score=48.36  Aligned_cols=198  Identities=14%  Similarity=0.121  Sum_probs=121.2

Q ss_pred             hHHHHHHHHHhhcC-------CCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcc
Q 006494          359 LIEEICSLIQNLSS-------SQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLS  431 (643)
Q Consensus       359 ~~~~i~~Lv~~L~s-------~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs  431 (643)
                      -...+|.|++.|..       ++|.....|-.+|..++..   .+..|+. .++|++-.-++++|+.-++.|+.++...-
T Consensus       317 ~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~---~~D~Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl  392 (859)
T KOG1241|consen  317 LQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQC---VGDDIVP-HVLPFIEENIQNPDWRNREAAVMAFGSIL  392 (859)
T ss_pred             HhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHH---hcccchh-hhHHHHHHhcCCcchhhhhHHHHHHHhhh
Confidence            45678888888864       2444555666667666632   2223333 35555556778899999999999988766


Q ss_pred             cChh-hHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcc---cCChhhHHHHHH
Q 006494          432 LDET-NKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLR---YGSIRGKKDAAT  507 (643)
Q Consensus       432 ~~~~-~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~---s~~~~~k~~A~~  507 (643)
                      ..++ .+..=...+++|.++.++.+.+.-++..+++++..++..-.  ..+...-..+.++..+-   ++.+++-.++++
T Consensus       393 ~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~--e~~~n~~~l~~~l~~l~~gL~DePrva~N~CW  470 (859)
T KOG1241|consen  393 EGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLP--EAIINQELLQSKLSALLEGLNDEPRVASNVCW  470 (859)
T ss_pred             cCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhch--hhcccHhhhhHHHHHHHHHhhhCchHHHHHHH
Confidence            5543 33332356789999999998888889999999999873222  23333223333333332   235788889999


Q ss_pred             HHHHhhc--CC---Cc-hHHHHhcCcHHHHHHHh----cc---CChhhHHHHHHHHHHHhCC-hhhHHHH
Q 006494          508 ALFNLSI--NQ---SN-KSRAIKAGIIPSLLKLL----ED---KALGMVDEALSILQLLASH-PEGRNEI  563 (643)
Q Consensus       508 aL~nLs~--~~---en-~~~iv~~G~v~~Lv~lL----~~---~~~~~~~~Al~iL~nLa~~-~~~~~~i  563 (643)
                      ++.+|+.  +.   .+ ...... -..+.++.-|    ..   ....+...|..+|..|..+ ++....+
T Consensus       471 Af~~Laea~~eA~~s~~qt~~~t-~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~  539 (859)
T KOG1241|consen  471 AFISLAEAAYEAAVSNGQTDPAT-PFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPM  539 (859)
T ss_pred             HHHHHHHHHHHhccCCCCCCccc-hhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHH
Confidence            9999983  11   11 111111 1222333322    11   2335677788899988887 4444444

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=94.06  E-value=1.3  Score=51.48  Aligned_cols=231  Identities=13%  Similarity=0.080  Sum_probs=124.6

Q ss_pred             hHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHH-hcCCCHHHHHHHHH---HHHhcccCh
Q 006494          359 LIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQL-LSYPDSKIQEHTVT---ALLNLSLDE  434 (643)
Q Consensus       359 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~l-L~~~~~~~~~~a~~---~L~nLs~~~  434 (643)
                      +...+..+++.|...+.++|..|++.+.-|++.-.+.+..-    .++.|+.- ++..+..--..++.   .+.|+.   
T Consensus        45 e~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~----~ve~L~~~~~s~keq~rdissi~Lktvi~nl~---  117 (1233)
T KOG1824|consen   45 ERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLET----IVENLCSNMLSGKEQLRDISSIGLKTVIANLP---  117 (1233)
T ss_pred             hhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHH----HHHHHhhhhccchhhhccHHHHHHHHHHhcCC---
Confidence            45789999999999999999999999998885443333221    22334333 32221111122222   233333   


Q ss_pred             hhHHHHHhcCChHHHHHHHccC-----C-HHHHHHHHHHHHHccccccccchh--hccCChHHHHHHcccCChhhHHHHH
Q 006494          435 TNKRHIAREGAIPAIIEILQNG-----T-NEARENSAAALFSLSMLDENRVMV--GNLNGIPPLVNLLRYGSIRGKKDAA  506 (643)
Q Consensus       435 ~~k~~i~~~g~i~~Lv~lL~~~-----~-~~~~~~Aa~~L~~Ls~~~~~k~~i--~~~g~i~~Lv~lL~s~~~~~k~~A~  506 (643)
                      ...........++.++..|..+     + ..++-.+.-.+...-..  .-..+  ...+.+..++.-+.+....+++.|+
T Consensus       118 P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr--~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai  195 (1233)
T KOG1824|consen  118 PSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSR--FGTLLPNFHLSILKCLLPQLQSPRLAVRKKAI  195 (1233)
T ss_pred             CccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHh--hcccCcchHHHHHHHHhhcccChHHHHHHHHH
Confidence            1111122233444444444332     2 22333333333222100  00001  1234455566666676778999999


Q ss_pred             HHHHHhhcCCCchHHHHhcCcHHHHHHHhccC-ChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHH---hcCChH
Q 006494          507 TALFNLSINQSNKSRAIKAGIIPSLLKLLEDK-ALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEII---KNGTPK  582 (643)
Q Consensus       507 ~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~-~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL---~~~s~~  582 (643)
                      .+|..|++...+   ..-.+++..|++=|... .......-..+|..++.....|.----...+|.+..+.   ...+++
T Consensus       196 ~~l~~la~~~~~---~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDE  272 (1233)
T KOG1824|consen  196 TALGHLASSCNR---DLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDE  272 (1233)
T ss_pred             HHHHHHHHhcCH---HHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHH
Confidence            999999874322   12234555566656442 22334444566666666443332211135678888888   557788


Q ss_pred             HHHHHHHHHHHhccCCHHH
Q 006494          583 NKECATSVLLELGLNNSYF  601 (643)
Q Consensus       583 ~ke~A~~~L~~L~~~~~~~  601 (643)
                      .+|..+.+|..+-...+..
T Consensus       273 LrE~~lQale~fl~rcp~e  291 (1233)
T KOG1824|consen  273 LREYCLQALESFLRRCPKE  291 (1233)
T ss_pred             HHHHHHHHHHHHHHhChhh
Confidence            9999999998887766543

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=93.86  E-value=1.6  Score=43.81  Aligned_cols=136  Identities=22%  Similarity=0.223  Sum_probs=95.9

Q ss_pred             ChhhHHHHHHHHHHhhcCCCc----hHHHHh-cCcHHHHHHHhcc-----CCh-------hhHHHHHHHHHHHhCChhhH
Q 006494          498 SIRGKKDAATALFNLSINQSN----KSRAIK-AGIIPSLLKLLED-----KAL-------GMVDEALSILQLLASHPEGR  560 (643)
Q Consensus       498 ~~~~k~~A~~aL~nLs~~~en----~~~iv~-~G~v~~Lv~lL~~-----~~~-------~~~~~Al~iL~nLa~~~~~~  560 (643)
                      +++.++.|   |..|+...+.    ...+.. -|.+..|++=+.+     ..+       .-+-.|+++|-.+|+|++.|
T Consensus         8 ~~~~Re~A---l~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr   84 (262)
T PF04078_consen    8 NPETRENA---LLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETR   84 (262)
T ss_dssp             SHHHHHHH---HHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTH
T ss_pred             CcchHHHH---HHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHH
Confidence            34455555   5555554332    344444 6777777655433     111       22456888999999999999


Q ss_pred             HHHHhcCcHHHHHHHHhcCC-----hHHHHHHHHHHHHhccCC-HHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHH
Q 006494          561 NEIGRLSFIETLVEIIKNGT-----PKNKECATSVLLELGLNN-SYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQ  634 (643)
Q Consensus       561 ~~i~~~g~i~~Lv~lL~~~s-----~~~ke~A~~~L~~L~~~~-~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~  634 (643)
                      ..+.++...-.|..+|...+     +..|-.+++++..|...+ ++....+++..++|..++.+..|++-.|-.|..++.
T Consensus        85 ~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlq  164 (262)
T PF04078_consen   85 MPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQ  164 (262)
T ss_dssp             HHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHH
T ss_pred             HHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHH
Confidence            99999998888888887644     456778889999998765 456666778899999999999999999999999988


Q ss_pred             Hh
Q 006494          635 HM  636 (643)
Q Consensus       635 ~l  636 (643)
                      .+
T Consensus       165 KI  166 (262)
T PF04078_consen  165 KI  166 (262)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=93.84  E-value=2.2  Score=43.75  Aligned_cols=220  Identities=17%  Similarity=0.144  Sum_probs=141.8

Q ss_pred             CHHHHHHHHHHHHHhhhhChhhHHHH-HhhCChHHHHHHhcCC--CHHHHHHHHHHHHhcccChhhHHHHHh-cCChHHH
Q 006494          374 QLNIKRDSVMKIRMLSKENPDNRILI-ANNGGIRPLVQLLSYP--DSKIQEHTVTALLNLSLDETNKRHIAR-EGAIPAI  449 (643)
Q Consensus       374 ~~~~~~~Al~~L~~La~~~~~~r~~i-~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~nLs~~~~~k~~i~~-~g~i~~L  449 (643)
                      ++-.+.-|+..+.++. -.++.|..+ ++...-..++.+++..  +.++|.+.+-+++-|+.++.....|-+ ...+..+
T Consensus       162 ~~lTrlfav~cl~~l~-~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dl  240 (432)
T COG5231         162 DFLTRLFAVSCLSNLE-FDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDL  240 (432)
T ss_pred             HHHHHHHHHHHHhhhh-hhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            3346677888888887 456666665 5555666788888753  678899999999999988766644432 2356677


Q ss_pred             HHHHccCC-HHHHHHHHHHHHHccccccccchhhc---cCChHHHHHHcccC---ChhhHHH---------------HHH
Q 006494          450 IEILQNGT-NEARENSAAALFSLSMLDENRVMVGN---LNGIPPLVNLLRYG---SIRGKKD---------------AAT  507 (643)
Q Consensus       450 v~lL~~~~-~~~~~~Aa~~L~~Ls~~~~~k~~i~~---~g~i~~Lv~lL~s~---~~~~k~~---------------A~~  507 (643)
                      +.+.+... ..+-..+++++.++.. ...|..|..   .|-+.+-+++|..+   +.+...+               ...
T Consensus       241 i~iVk~~~keKV~Rlc~~Iv~n~~d-K~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~f  319 (432)
T COG5231         241 IAIVKERAKEKVLRLCCGIVANVLD-KSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIF  319 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc-ccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHH
Confidence            77776542 4455567788888764 223334433   45566666666543   2222211               100


Q ss_pred             --HHHHh-----hcCC---------CchHHHHh--cCcHHHHHHHhccCChh-hHHHHHHHHHHHhC-ChhhHHHHHhcC
Q 006494          508 --ALFNL-----SINQ---------SNKSRAIK--AGIIPSLLKLLEDKALG-MVDEALSILQLLAS-HPEGRNEIGRLS  567 (643)
Q Consensus       508 --aL~nL-----s~~~---------en~~~iv~--~G~v~~Lv~lL~~~~~~-~~~~Al~iL~nLa~-~~~~~~~i~~~g  567 (643)
                        -+..|     +..+         .|..++.+  -..+..|.++|...++. ...-|+.=+..+.. .|+++..+...|
T Consensus       320 D~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg  399 (432)
T COG5231         320 DNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYG  399 (432)
T ss_pred             HHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhh
Confidence              01111     2222         13344444  34788899999875554 34445655666665 499999999999


Q ss_pred             cHHHHHHHHhcCChHHHHHHHHHHHHhc
Q 006494          568 FIETLVEIIKNGTPKNKECATSVLLELG  595 (643)
Q Consensus       568 ~i~~Lv~lL~~~s~~~ke~A~~~L~~L~  595 (643)
                      +=..++.++.+.++++|-.|+.++..+-
T Consensus       400 ~k~~im~L~nh~d~~VkfeAl~a~q~~i  427 (432)
T COG5231         400 VKEIIMNLINHDDDDVKFEALQALQTCI  427 (432)
T ss_pred             hHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence            9999999999999999999999886543

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.79  E-value=0.032  Score=59.30  Aligned_cols=51  Identities=14%  Similarity=0.381  Sum_probs=39.6

Q ss_pred             CCCcccCccCcccc-----------------cCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCC
Q 006494          269 VPHEFLCPVTLEIM-----------------TDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDH  319 (643)
Q Consensus       269 ~p~~f~Cpi~~~~m-----------------~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~  319 (643)
                      +....-|+||+.-.                 ++-+++||.|.|.+.|+++|.+.-.-.||.||.+|+.
T Consensus       568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp  635 (636)
T KOG0828|consen  568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP  635 (636)
T ss_pred             hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence            44556799995422                 1356679999999999999999645689999999864

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=93.72  E-value=0.92  Score=49.57  Aligned_cols=154  Identities=19%  Similarity=0.195  Sum_probs=111.8

Q ss_pred             ChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCCh----hhHHHHHHHHHHhhcCCCchH
Q 006494          445 AIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSI----RGKKDAATALFNLSINQSNKS  520 (643)
Q Consensus       445 ~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~----~~k~~A~~aL~nLs~~~en~~  520 (643)
                      ....+.+++.+|+...+..|...|.+|+.+......+....++..|.+++.+|..    ......+.++..|-.+.-.-.
T Consensus        84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW  163 (713)
T KOG2999|consen   84 YAKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW  163 (713)
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence            4566788889999888888999999999988888888888999999999998864    334444455544433322222


Q ss_pred             HHHhcCcHHHHHHHhcc--CChhhHHHHHHHHHHHhCChh-hHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccC
Q 006494          521 RAIKAGIIPSLLKLLED--KALGMVDEALSILQLLASHPE-GRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLN  597 (643)
Q Consensus       521 ~iv~~G~v~~Lv~lL~~--~~~~~~~~Al~iL~nLa~~~~-~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~  597 (643)
                      ..+.-.+|.....+..-  .+..+...|+.+|.++..+.. -+..+.+.--+..|+..+..++...+.+|.+.+-.+-..
T Consensus       164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~  243 (713)
T KOG2999|consen  164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRK  243 (713)
T ss_pred             eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhh
Confidence            22333344444444422  345678889999999999865 666677777799999999999988888888888777654


Q ss_pred             C
Q 006494          598 N  598 (643)
Q Consensus       598 ~  598 (643)
                      .
T Consensus       244 a  244 (713)
T KOG2999|consen  244 A  244 (713)
T ss_pred             C
Confidence            3

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.66  E-value=2.7  Score=47.96  Aligned_cols=209  Identities=16%  Similarity=0.142  Sum_probs=140.2

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHHhc
Q 006494          364 CSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIARE  443 (643)
Q Consensus       364 ~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~~~  443 (643)
                      ..|.++|.+........|.+.|-.+...+.+...      ..|.+|+...+.+.+++.-.---|..-+....+-..+   
T Consensus        38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~dvS~------~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL---  108 (968)
T KOG1060|consen   38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGKDVSL------LFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL---  108 (968)
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHhcCCcHHH------HHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee---
Confidence            4577788888888889998876554434433222      3567888888888998877655555545444443322   


Q ss_pred             CChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhc-CCCchHHH
Q 006494          444 GAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSI-NQSNKSRA  522 (643)
Q Consensus       444 g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~-~~en~~~i  522 (643)
                       -|..+=+-|++++..+|..|..+|..+      |..+...=++-++-+...+.++.+++.|+.||--|-+ .++.+..+
T Consensus       109 -SIntfQk~L~DpN~LiRasALRvlSsI------Rvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL  181 (968)
T KOG1060|consen  109 -SINTFQKALKDPNQLIRASALRVLSSI------RVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQL  181 (968)
T ss_pred             -eHHHHHhhhcCCcHHHHHHHHHHHHhc------chhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHH
Confidence             245566678889999997777777655      2222222222333344456688999999999999876 44455554


Q ss_pred             HhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccC
Q 006494          523 IKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLN  597 (643)
Q Consensus       523 v~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~  597 (643)
                      +     ..+-.+|.+.++.++-.|+.+...+|-+  .-+.|  .+-...|+.+|...++..|-.....|..-|++
T Consensus       182 ~-----e~I~~LLaD~splVvgsAv~AF~evCPe--rldLI--HknyrklC~ll~dvdeWgQvvlI~mL~RYAR~  247 (968)
T KOG1060|consen  182 E-----EVIKKLLADRSPLVVGSAVMAFEEVCPE--RLDLI--HKNYRKLCRLLPDVDEWGQVVLINMLTRYARH  247 (968)
T ss_pred             H-----HHHHHHhcCCCCcchhHHHHHHHHhchh--HHHHh--hHHHHHHHhhccchhhhhHHHHHHHHHHHHHh
Confidence            3     4456667788888888888877776653  33333  24578888988888888888888888887764

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=93.65  E-value=1.4  Score=48.73  Aligned_cols=147  Identities=14%  Similarity=0.133  Sum_probs=94.6

Q ss_pred             ChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhH---HHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccch
Q 006494          404 GIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNK---RHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVM  480 (643)
Q Consensus       404 ~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k---~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~  480 (643)
                      .|..++.+|+++.+.++++|+.....|+.-=.++   ..+..-|.  .|.+-|....+++.-....++..+......+..
T Consensus       605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~m  682 (975)
T COG5181         605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVHRFRSM  682 (975)
T ss_pred             HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhhccccc
Confidence            3556777888888999999988777665321111   11223332  244555556677776666666666544333221


Q ss_pred             h-hccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCc----hHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhC
Q 006494          481 V-GNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSN----KSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLAS  555 (643)
Q Consensus       481 i-~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en----~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~  555 (643)
                      - --.|.+|.|..+|++....+..+.+..+..+|.+.+.    |..|   .+--.|+++|.+.+.++...|...+..++.
T Consensus       683 qpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWM---RIcfeLvd~Lks~nKeiRR~A~~tfG~Is~  759 (975)
T COG5181         683 QPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWM---RICFELVDSLKSWNKEIRRNATETFGCISR  759 (975)
T ss_pred             CCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence            1 1257899999999999999999998888888875443    3333   233457777877777887777776666654

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=93.64  E-value=1.1  Score=47.34  Aligned_cols=197  Identities=14%  Similarity=0.130  Sum_probs=142.2

Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHH-----HHHhh--CChHHHHHHhcCCCHHHHHHHHHHHHhcccC
Q 006494          361 EEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRI-----LIANN--GGIRPLVQLLSYPDSKIQEHTVTALLNLSLD  433 (643)
Q Consensus       361 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~-----~i~~~--g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~  433 (643)
                      +.+..|+..|..-+-+.+..++....++.+.....+.     ++..+  ..+..|+.--  +++++--.+-..|.....+
T Consensus        76 dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy--~~~dial~~g~mlRec~k~  153 (335)
T PF08569_consen   76 DLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY--ENPDIALNCGDMLRECIKH  153 (335)
T ss_dssp             THHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG--GSTTTHHHHHHHHHHHTTS
T ss_pred             CHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh--cCccccchHHHHHHHHHhh
Confidence            4677888888888888888888888888777655543     23222  2333333333  3566777788888888888


Q ss_pred             hhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHcccc-ccccchhhc---cCChHHHHHHcccCChhhHHHHHHHH
Q 006494          434 ETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSML-DENRVMVGN---LNGIPPLVNLLRYGSIRGKKDAATAL  509 (643)
Q Consensus       434 ~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~-~~~k~~i~~---~g~i~~Lv~lL~s~~~~~k~~A~~aL  509 (643)
                      +.....+.....+..+.+.+..++-++...|..++..|-.. ...-.....   ...+.....+|.+++--+++.++..|
T Consensus       154 e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL  233 (335)
T PF08569_consen  154 ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLL  233 (335)
T ss_dssp             HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHH
T ss_pred             HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHH
Confidence            88888888888888899999999999998899888886433 222222222   24677888999999999999999999


Q ss_pred             HHhhcCCCchHHHHh----cCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhh
Q 006494          510 FNLSINQSNKSRAIK----AGIIPSLLKLLEDKALGMVDEALSILQLLASHPEG  559 (643)
Q Consensus       510 ~nLs~~~en~~~iv~----~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~  559 (643)
                      ..|..++.|-.-|..    ..-+..+..+|.+.+..++-+|..+..-.+.+|..
T Consensus       234 ~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K  287 (335)
T PF08569_consen  234 GELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNK  287 (335)
T ss_dssp             HHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-
T ss_pred             HHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCC
Confidence            999999999665543    45678888999999999999999999988887643

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=93.59  E-value=0.067  Score=39.53  Aligned_cols=45  Identities=18%  Similarity=0.330  Sum_probs=25.1

Q ss_pred             cccCccCcccccCCeec-CCccc--ccHHhHHHHH-hcCCCCCCCCCcc
Q 006494          272 EFLCPVTLEIMTDPVIV-ATGQT--YERESIQRWL-NSNHKTCPKTGQI  316 (643)
Q Consensus       272 ~f~Cpi~~~~m~dPv~~-~~g~t--~~r~~I~~w~-~~~~~~cP~~~~~  316 (643)
                      .+.|||+...|.-||-- .|-|.  ||-...-+.. ..+...||.|+++
T Consensus         2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~   50 (50)
T PF02891_consen    2 SLRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP   50 (50)
T ss_dssp             ESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred             eeeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence            36899999999999974 57664  8875444444 3556789999864

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.44  E-value=3.1  Score=46.96  Aligned_cols=160  Identities=13%  Similarity=0.215  Sum_probs=99.5

Q ss_pred             CCHHHHHHHHHHHHhccc--ChhhHHHHHhcCChHHHHHHHcc----CCHHHHHHHHHHHHHc---c-ccccccchhhcc
Q 006494          415 PDSKIQEHTVTALLNLSL--DETNKRHIAREGAIPAIIEILQN----GTNEARENSAAALFSL---S-MLDENRVMVGNL  484 (643)
Q Consensus       415 ~~~~~~~~a~~~L~nLs~--~~~~k~~i~~~g~i~~Lv~lL~~----~~~~~~~~Aa~~L~~L---s-~~~~~k~~i~~~  484 (643)
                      +.+..+.+.+++|.+...  ++..+..+.+  .++.++...+.    .++.-....-++||..   + ..|...+.+.  
T Consensus       253 P~PWL~vKl~rlLq~~p~~~D~~~r~~l~e--vl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--  328 (938)
T KOG1077|consen  253 PAPWLQVKLLRLLQIYPTPEDPSTRARLNE--VLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--  328 (938)
T ss_pred             CChHHHHHHHHHHHhCCCCCCchHHHHHHH--HHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--
Confidence            467788888888888753  3344444433  34444444432    1222222222344432   2 3344444444  


Q ss_pred             CChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhc-cCChhhHHHHHHHHHHHhCChhhHHHH
Q 006494          485 NGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLE-DKALGMVDEALSILQLLASHPEGRNEI  563 (643)
Q Consensus       485 g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~-~~~~~~~~~Al~iL~nLa~~~~~~~~i  563 (643)
                      .++..|-++|.+.....+..|+..+..|++.......+-..  ...++..|+ +.+-.++..|+..|..+|.....+ . 
T Consensus       329 ~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak-~-  404 (938)
T KOG1077|consen  329 RAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAK-Q-  404 (938)
T ss_pred             HHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchhhHH-H-
Confidence            36788888888888888999999999998885555444333  667777787 567788999999999998854333 2 


Q ss_pred             HhcCcHHHHHHHHhcCChHHHHH
Q 006494          564 GRLSFIETLVEIIKNGTPKNKEC  586 (643)
Q Consensus       564 ~~~g~i~~Lv~lL~~~s~~~ke~  586 (643)
                          +|.-|+..|.+.+...||.
T Consensus       405 ----IV~elLqYL~tAd~siree  423 (938)
T KOG1077|consen  405 ----IVAELLQYLETADYSIREE  423 (938)
T ss_pred             ----HHHHHHHHHhhcchHHHHH
Confidence                3445666666666666654

>KOG1788 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.34  E-value=2.3  Score=49.79  Aligned_cols=255  Identities=18%  Similarity=0.215  Sum_probs=152.9

Q ss_pred             HHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcc-cChhhHHHHHhcCChHHHHHHHccCC----
Q 006494          383 MKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLS-LDETNKRHIAREGAIPAIIEILQNGT----  457 (643)
Q Consensus       383 ~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs-~~~~~k~~i~~~g~i~~Lv~lL~~~~----  457 (643)
                      ..|-.+.|.+.+|...+.++.++..++.++-++  +-+...++++.-|. .++. +   +....+-.++..|++|-    
T Consensus       664 DcLisllKnnteNqklFreanGvklilpflind--ehRSslLrivscLitvdpk-q---vhhqelmalVdtLksgmvt~I  737 (2799)
T KOG1788|consen  664 DCLISLLKNNTENQKLFREANGVKLILPFLIND--EHRSSLLRIVSCLITVDPK-Q---VHHQELMALVDTLKSGMVTRI  737 (2799)
T ss_pred             HHHHHHHhccchhhHHHHhhcCceEEEEeeech--HHHHHHHHHHHHHhccCcc-c---ccHHHHHHHHHHHHhcceecc
Confidence            456677888999999999998888888877543  23333344443332 2221 0   11223455666676642    


Q ss_pred             --------HHHHHHHHHHHHHccccc-cccchhhccCChHHHHHHccc----------CChhhHHHHHHHHHHh-----h
Q 006494          458 --------NEARENSAAALFSLSMLD-ENRVMVGNLNGIPPLVNLLRY----------GSIRGKKDAATALFNL-----S  513 (643)
Q Consensus       458 --------~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~s----------~~~~~k~~A~~aL~nL-----s  513 (643)
                              ........++++.+...+ ..+..+++.+++..|...|..          ++.-+...-...|+.+     |
T Consensus       738 sgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlavc  817 (2799)
T KOG1788|consen  738 SGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAVC  817 (2799)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHHh
Confidence                    123344556777765444 578888999999888877631          1222222333344332     3


Q ss_pred             cCCCchHHHHh-------------cC---------cHHHHHHHhcc--CChhhHH--HHHHHHHHHhCC------h----
Q 006494          514 INQSNKSRAIK-------------AG---------IIPSLLKLLED--KALGMVD--EALSILQLLASH------P----  557 (643)
Q Consensus       514 ~~~en~~~iv~-------------~G---------~v~~Lv~lL~~--~~~~~~~--~Al~iL~nLa~~------~----  557 (643)
                      .++.|+.++-.             .|         +|..|.++--.  ..+.+..  .|++-+-.+-.+      |    
T Consensus       818 enasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPsGqf  897 (2799)
T KOG1788|consen  818 ENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSGQF  897 (2799)
T ss_pred             hcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCCCc
Confidence            46666655422             23         22222222110  1111111  122222222111      1    


Q ss_pred             -hhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHH---hhCCHHHHHHHHHHH
Q 006494          558 -EGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEIT---RCGTNRGQRKANSLL  633 (643)
Q Consensus       558 -~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll---~~g~~~~k~~A~~lL  633 (643)
                       ..++.|..+|++..|+..+-...|..+-.-+..|-.+++.++.........|+++.|++++   .+|+..--..|.+++
T Consensus       898 npdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspfLshalkIv  977 (2799)
T KOG1788|consen  898 NPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALKIV  977 (2799)
T ss_pred             CchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccHHHH
Confidence             1466778889999999988888999888888999999998887777777789999999886   467777777788888


Q ss_pred             HHhhhccCCC
Q 006494          634 QHMSKREHIP  643 (643)
Q Consensus       634 ~~l~~~~e~p  643 (643)
                      .+|+-+.-.|
T Consensus       978 emLgayrlsp  987 (2799)
T KOG1788|consen  978 EMLGAYRLSP  987 (2799)
T ss_pred             HHHhhccCCc
Confidence            8777655443

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=93.25  E-value=0.35  Score=47.64  Aligned_cols=86  Identities=19%  Similarity=0.132  Sum_probs=67.7

Q ss_pred             hHHHHHHHHHHHhCChhhHHHHHhcCcHH-------HHHHHHh-cCChHHHHHHHHHHHHhccCCHHHH-HHHHHcCcHH
Q 006494          542 MVDEALSILQLLASHPEGRNEIGRLSFIE-------TLVEIIK-NGTPKNKECATSVLLELGLNNSYFI-LAALQYGVYE  612 (643)
Q Consensus       542 ~~~~Al~iL~nLa~~~~~~~~i~~~g~i~-------~Lv~lL~-~~s~~~ke~A~~~L~~L~~~~~~~~-~~~~~~g~i~  612 (643)
                      -+..|+.+|+.|+-.+.+...+.+.+-..       .|++++. ++++..||.|+.+|.+||.++...+ ..+.+.+++.
T Consensus       140 PqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~  219 (257)
T PF12031_consen  140 PQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCIS  219 (257)
T ss_pred             HHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHH
Confidence            47899999999999999888887765433       3444443 3678899999999999999988766 4566789999


Q ss_pred             HHHHHHhhCCHHHHH
Q 006494          613 HLVEITRCGTNRGQR  627 (643)
Q Consensus       613 ~L~~ll~~g~~~~k~  627 (643)
                      .|+.++..+...+..
T Consensus       220 ~Li~FiE~a~~~~~~  234 (257)
T PF12031_consen  220 HLIAFIEDAEQNAHQ  234 (257)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999887554443

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=93.23  E-value=0.56  Score=44.91  Aligned_cols=109  Identities=14%  Similarity=0.124  Sum_probs=76.2

Q ss_pred             CChHHHHHHcccCChhhHHHHHHHHHHhhcCCC--chHHHHhcCcHHHHHHHhcc---------CChhhHHHHHHHHHHH
Q 006494          485 NGIPPLVNLLRYGSIRGKKDAATALFNLSINQS--NKSRAIKAGIIPSLLKLLED---------KALGMVDEALSILQLL  553 (643)
Q Consensus       485 g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~e--n~~~iv~~G~v~~Lv~lL~~---------~~~~~~~~Al~iL~nL  553 (643)
                      .....+++.+.++....  ..+.-|.-...+.+  -...+++.||+..|+++|..         .+......++.+|..|
T Consensus        66 ~~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal  143 (187)
T PF06371_consen   66 SSPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL  143 (187)
T ss_dssp             HHHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence            34556777776664332  22222222122222  25678899999999999865         1225678899999999


Q ss_pred             hCChhhHHHHHh-cCcHHHHHHHHhcCChHHHHHHHHHHHHhc
Q 006494          554 ASHPEGRNEIGR-LSFIETLVEIIKNGTPKNKECATSVLLELG  595 (643)
Q Consensus       554 a~~~~~~~~i~~-~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~  595 (643)
                      ..+..|...+.+ .+++..|+..|.+.+..++..|+.+|..+|
T Consensus       144 ~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  144 MNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             TSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred             HccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            999999998887 488999999999999999999999999988

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=93.13  E-value=1.5  Score=47.26  Aligned_cols=145  Identities=19%  Similarity=0.161  Sum_probs=98.3

Q ss_pred             HHHHHccCCHHHHHHHHHHHHHcccccc----ccchhhccCChHHHHHHcccCC-------hhhHHHHHHHHHHhhcCCC
Q 006494          449 IIEILQNGTNEARENSAAALFSLSMLDE----NRVMVGNLNGIPPLVNLLRYGS-------IRGKKDAATALFNLSINQS  517 (643)
Q Consensus       449 Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~----~k~~i~~~g~i~~Lv~lL~s~~-------~~~k~~A~~aL~nLs~~~e  517 (643)
                      +..+++..+.+-|-.|.-..-.+...++    +|..+.+.-+++.+=.++.+++       .-.+..++..|...|+.++
T Consensus        16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE   95 (698)
T KOG2611|consen   16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE   95 (698)
T ss_pred             HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence            4444444444444333333344544333    6777888878888888886542       2335566788888998887


Q ss_pred             c--hHHHHhcCcHHHHHHHhcc-CCh------hhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCC-hHHHHHH
Q 006494          518 N--KSRAIKAGIIPSLLKLLED-KAL------GMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGT-PKNKECA  587 (643)
Q Consensus       518 n--~~~iv~~G~v~~Lv~lL~~-~~~------~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s-~~~ke~A  587 (643)
                      -  ...|++  .||.|.+++.. .++      .+.+.+-.+|..++.++.|..+++..|+++.+.++-.-.+ .....-|
T Consensus        96 lAsh~~~v~--~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~ala  173 (698)
T KOG2611|consen   96 LASHEEMVS--RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMALA  173 (698)
T ss_pred             hccCHHHHH--hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHHH
Confidence            4  556665  59999999965 233      3899999999999999999999999999999998764322 2334455


Q ss_pred             HHHHHHhc
Q 006494          588 TSVLLELG  595 (643)
Q Consensus       588 ~~~L~~L~  595 (643)
                      +.++.-+.
T Consensus       174 l~Vlll~~  181 (698)
T KOG2611|consen  174 LKVLLLLV  181 (698)
T ss_pred             HHHHHHHH
Confidence            55555443

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=92.97  E-value=19  Score=42.57  Aligned_cols=227  Identities=16%  Similarity=0.158  Sum_probs=128.1

Q ss_pred             HHHHHHHHHhhcC-----CCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhc----CCC----HHHHHHHHHH
Q 006494          360 IEEICSLIQNLSS-----SQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLS----YPD----SKIQEHTVTA  426 (643)
Q Consensus       360 ~~~i~~Lv~~L~s-----~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~----~~~----~~~~~~a~~~  426 (643)
                      .+++..++..+.+     ...+.....++.|+..++ -..||..+.+.|+++.|+..|.    ...    ..+-+..+.+
T Consensus       116 ~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~I  194 (802)
T PF13764_consen  116 CGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEI  194 (802)
T ss_pred             CCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHH
Confidence            3456666666653     233334445566666664 4889999999999999988775    323    4555555555


Q ss_pred             HHhcccChh---hHH--HHHhc--------CChHHHHHHHccC----CHHHHHHHHHHHHHccccccccchhhccCChHH
Q 006494          427 LLNLSLDET---NKR--HIARE--------GAIPAIIEILQNG----TNEARENSAAALFSLSMLDENRVMVGNLNGIPP  489 (643)
Q Consensus       427 L~nLs~~~~---~k~--~i~~~--------g~i~~Lv~lL~~~----~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~  489 (643)
                      +..|.....   ...  .....        ..+..+++.+.+.    +..+....+.+|-+|+..++.+        +..
T Consensus       195 iE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~--------m~~  266 (802)
T PF13764_consen  195 IESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEK--------MDA  266 (802)
T ss_pred             HHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHH--------HHH
Confidence            544432111   100  00111        1256666666543    5777888899999998765542        233


Q ss_pred             HHHHccc---------C-ChhhHHHHHHHHHHhhc----CC---CchHHHHhcCcHHHHHHHhccCCh--------h---
Q 006494          490 LVNLLRY---------G-SIRGKKDAATALFNLSI----NQ---SNKSRAIKAGIIPSLLKLLEDKAL--------G---  541 (643)
Q Consensus       490 Lv~lL~s---------~-~~~~k~~A~~aL~nLs~----~~---en~~~iv~~G~v~~Lv~lL~~~~~--------~---  541 (643)
                      |++.++.         . +.+. ...+..+..++.    +.   .-|..+++.|++...++.|....+        +   
T Consensus       267 Lv~~F~p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~  345 (802)
T PF13764_consen  267 LVEHFKPYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKE  345 (802)
T ss_pred             HHHHHHHhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHH
Confidence            3333221         1 1111 122344444442    11   127889999999999998865222        2   


Q ss_pred             -----hHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCC--hHHHHHHHHHHHHhccC
Q 006494          542 -----MVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGT--PKNKECATSVLLELGLN  597 (643)
Q Consensus       542 -----~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s--~~~ke~A~~~L~~L~~~  597 (643)
                           ....++.+|.-||......+.+...+++ .++.-|...+  ..+-..|=.+|-.|+.+
T Consensus       346 ~l~~psLp~iL~lL~GLa~gh~~tQ~~~~~~~l-~~lH~LEqvss~~~IGslAEnlLeal~~~  407 (802)
T PF13764_consen  346 FLSRPSLPYILRLLRGLARGHEPTQLLIAEQLL-PLLHRLEQVSSEEHIGSLAENLLEALAEN  407 (802)
T ss_pred             HhcCCcHHHHHHHHHHHHhcCHHHHHHHHhhHH-HHHHHhhcCCCccchHHHHHHHHHHHhcC
Confidence                 2445788888888876555555556666 4445454422  33334455556666663

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=92.87  E-value=0.57  Score=39.92  Aligned_cols=70  Identities=10%  Similarity=0.136  Sum_probs=56.4

Q ss_pred             CcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhh
Q 006494          567 SFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMS  637 (643)
Q Consensus       567 g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~  637 (643)
                      ..+++++..+.+.+.++|..|+.+|.+++....+.... --..+...|.+++.+.++++|..|.-+-++|.
T Consensus        27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~-~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~llk   96 (97)
T PF12755_consen   27 EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILP-YFNEIFDALCKLSADPDENVRSAAELLDRLLK   96 (97)
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCchhHHHHHHHHHHHhc
Confidence            57888999999999999999999999999764432221 12568899999999999999999977777664

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.86  E-value=0.054  Score=56.49  Aligned_cols=61  Identities=25%  Similarity=0.529  Sum_probs=48.3

Q ss_pred             cccCccCcccccCCe-----ecCCcccccHHhHHHHHhcC-CCCCCCCCcccCCCCCCchhhhHHHH
Q 006494          272 EFLCPVTLEIMTDPV-----IVATGQTYERESIQRWLNSN-HKTCPKTGQILDHLSLAPNYALRNLI  332 (643)
Q Consensus       272 ~f~Cpi~~~~m~dPv-----~~~~g~t~~r~~I~~w~~~~-~~~cP~~~~~l~~~~l~pn~~lr~lI  332 (643)
                      ..+||||++-..-|+     ++.|||-|-..||++|+... ...||.|.-.-....+.|-+.+|...
T Consensus         4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~qa   70 (463)
T KOG1645|consen    4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQA   70 (463)
T ss_pred             cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHHH
Confidence            468999999888775     46899999999999999521 24599998777777788877777653

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=92.83  E-value=1.6  Score=47.78  Aligned_cols=154  Identities=18%  Similarity=0.173  Sum_probs=115.5

Q ss_pred             CChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCCh----hhHHHHHHHHHHHhCChhhH
Q 006494          485 NGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKAL----GMVDEALSILQLLASHPEGR  560 (643)
Q Consensus       485 g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~----~~~~~Al~iL~nLa~~~~~~  560 (643)
                      .....+..++.+++...+..|..-|..|+..+.....++...++..|.+++.++..    .+....+.++..|-.+.-..
T Consensus        83 ~~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvs  162 (713)
T KOG2999|consen   83 HYAKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVS  162 (713)
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceee
Confidence            35567888899999999999999999999999999999999999999999987533    44555556655555543211


Q ss_pred             HHHHhcCcHHHHHHHHhc--CChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494          561 NEIGRLSFIETLVEIIKN--GTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK  638 (643)
Q Consensus       561 ~~i~~~g~i~~Lv~lL~~--~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~  638 (643)
                      =..+...+|.....+..-  ....+-..|+.+|-++..++....+.+.++--+..|...++.++.+...+|.++|..|-.
T Consensus       163 W~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~  242 (713)
T KOG2999|consen  163 WESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFR  242 (713)
T ss_pred             eeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence            111223445555555422  233455789999999998888777888888889999999999999999999999987643

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=92.78  E-value=0.12  Score=37.94  Aligned_cols=40  Identities=25%  Similarity=0.596  Sum_probs=31.0

Q ss_pred             CccCcc--cccCCeecCCc-----ccccHHhHHHHHhcC-CCCCCCCC
Q 006494          275 CPVTLE--IMTDPVIVATG-----QTYERESIQRWLNSN-HKTCPKTG  314 (643)
Q Consensus       275 Cpi~~~--~m~dPv~~~~g-----~t~~r~~I~~w~~~~-~~~cP~~~  314 (643)
                      |-||++  --.+|.+.||.     +.+.+.|+.+|+... +.+||+|+
T Consensus         2 CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        2 CRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             ccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            677775  44578888874     779999999999853 56799884

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=92.43  E-value=0.92  Score=38.66  Aligned_cols=68  Identities=18%  Similarity=0.173  Sum_probs=49.7

Q ss_pred             CChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHc
Q 006494          403 GGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSL  471 (643)
Q Consensus       403 g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~L  471 (643)
                      ..+++++..+.++|++++..|+++|.|++..-.......-...++.|.+++.+.++.++. ++..|-.|
T Consensus        27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~-~a~~Ld~l   94 (97)
T PF12755_consen   27 EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRS-AAELLDRL   94 (97)
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHH-HHHHHHHH
Confidence            468899999999999999999999999985443222222345777888888888888775 44555443

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=92.31  E-value=6.7  Score=41.00  Aligned_cols=191  Identities=17%  Similarity=0.166  Sum_probs=105.5

Q ss_pred             hHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhc--cCChHHHHHHcccCChhhHHHHHHHHHHhhcC---CCchH
Q 006494          446 IPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGN--LNGIPPLVNLLRYGSIRGKKDAATALFNLSIN---QSNKS  520 (643)
Q Consensus       446 i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~--~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~---~en~~  520 (643)
                      +...+..+.......|+.+...+..+-...-....+..  .-.+..+.+.++.|...-+..|+.++.-|+..   .+...
T Consensus        45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~  124 (309)
T PF05004_consen   45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE  124 (309)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence            33444445555677777777777766432222222222  22567788888888776667777777777654   23444


Q ss_pred             HHHhcCcHHHHHHHhccCChh--hHHHHHHHHHHHhCCh-hhHHHHHh-cCcHHHHH--HHHhc-C---------ChHHH
Q 006494          521 RAIKAGIIPSLLKLLEDKALG--MVDEALSILQLLASHP-EGRNEIGR-LSFIETLV--EIIKN-G---------TPKNK  584 (643)
Q Consensus       521 ~iv~~G~v~~Lv~lL~~~~~~--~~~~Al~iL~nLa~~~-~~~~~i~~-~g~i~~Lv--~lL~~-~---------s~~~k  584 (643)
                      .+.+ ...|.|.+.+.+....  ....++.+|+.++.-. ..-..+.+ ...+..+.  ...+. +         ++...
T Consensus       125 ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~  203 (309)
T PF05004_consen  125 EIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALV  203 (309)
T ss_pred             HHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHH
Confidence            4444 5788999999875433  3344555555544421 11111110 01222111  11221 1         13345


Q ss_pred             HHHHHHHHHhccC-CHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494          585 ECATSVLLELGLN-NSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK  638 (643)
Q Consensus       585 e~A~~~L~~L~~~-~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~  638 (643)
                      -.|+..-..|... +........ ...++.|..++.+.+..+|-.|.+.|-.|.+
T Consensus       204 ~aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E  257 (309)
T PF05004_consen  204 AAALSAWALLLTTLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLYE  257 (309)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            5555443333332 232233222 3579999999999999999999998887753

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=92.26  E-value=6.5  Score=39.50  Aligned_cols=196  Identities=20%  Similarity=0.225  Sum_probs=118.8

Q ss_pred             HHHHHHHHHhhcC--CCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccC---h
Q 006494          360 IEEICSLIQNLSS--SQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLD---E  434 (643)
Q Consensus       360 ~~~i~~Lv~~L~s--~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~---~  434 (643)
                      ...++.|+..|..  ..+-+|-+|..+|..+. .          .+..+.|-+..+.+...+.+.+-.++..+-.-   +
T Consensus        66 ~~Av~~l~~vl~desq~pmvRhEAaealga~~-~----------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~  134 (289)
T KOG0567|consen   66 EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-D----------PESLEILTKYIKDPCKEVRETCELAIKRLEWKDIID  134 (289)
T ss_pred             chhhHHHHHHhcccccchHHHHHHHHHHHhhc-c----------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhccc
Confidence            4678888888874  45667778888888765 1          23445566666555555555444444443211   1


Q ss_pred             h--hH-HHH-Hh------cCChHHHHHHHccCC--HHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhH
Q 006494          435 T--NK-RHI-AR------EGAIPAIIEILQNGT--NEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGK  502 (643)
Q Consensus       435 ~--~k-~~i-~~------~g~i~~Lv~lL~~~~--~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k  502 (643)
                      .  +. ..+ ++      .+-+..+-..|.+.+  .--|.   .++|.|-       .++...+|..|++=+..++.-.+
T Consensus       135 ~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry---~amF~LR-------n~g~EeaI~al~~~l~~~Salfr  204 (289)
T KOG0567|consen  135 KIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERY---RAMFYLR-------NIGTEEAINALIDGLADDSALFR  204 (289)
T ss_pred             cccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHH---hhhhHhh-------ccCcHHHHHHHHHhcccchHHHH
Confidence            0  00 000 11      111333333332221  11222   2233321       12333477888888877788888


Q ss_pred             HHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhcc--CChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCC
Q 006494          503 KDAATALFNLSINQSNKSRAIKAGIIPSLLKLLED--KALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGT  580 (643)
Q Consensus       503 ~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~--~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s  580 (643)
                      ..++.++..|-+          .-+||.|.+.|.+  .++-+.-+|+.+|..++.          ..++..|.+++....
T Consensus       205 hEvAfVfGQl~s----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~----------e~~~~vL~e~~~D~~  264 (289)
T KOG0567|consen  205 HEVAFVFGQLQS----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD----------EDCVEVLKEYLGDEE  264 (289)
T ss_pred             HHHHHHHhhccc----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC----------HHHHHHHHHHcCCcH
Confidence            888888877643          4578999999876  566788889998876654          467888999998888


Q ss_pred             hHHHHHHHHHHHHhcc
Q 006494          581 PKNKECATSVLLELGL  596 (643)
Q Consensus       581 ~~~ke~A~~~L~~L~~  596 (643)
                      +.+++.+..+|..+-.
T Consensus       265 ~vv~esc~valdm~ey  280 (289)
T KOG0567|consen  265 RVVRESCEVALDMLEY  280 (289)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            8888888877765543

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=92.16  E-value=0.36  Score=45.13  Aligned_cols=146  Identities=22%  Similarity=0.202  Sum_probs=97.3

Q ss_pred             CChHHHHHHHcc--CCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCC-chH
Q 006494          444 GAIPAIIEILQN--GTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQS-NKS  520 (643)
Q Consensus       444 g~i~~Lv~lL~~--~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~e-n~~  520 (643)
                      ..++.++..|..  .+.++|..+.-++..+-  +..+....+ -.-+.+-.++..+..+....++.++..|-..+. ...
T Consensus         3 ~~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~~-~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~   79 (157)
T PF11701_consen    3 DELDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFKE-KISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGS   79 (157)
T ss_dssp             CCCCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHH
T ss_pred             HHHHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHHH-HHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHH
Confidence            345666666654  46678887887777762  223332221 122333344455555677788888888776443 444


Q ss_pred             HHH-hcCcHHHHHHHhc--cCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCC-hH-HHHHHHHHHHH
Q 006494          521 RAI-KAGIIPSLLKLLE--DKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGT-PK-NKECATSVLLE  593 (643)
Q Consensus       521 ~iv-~~G~v~~Lv~lL~--~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s-~~-~ke~A~~~L~~  593 (643)
                      .+. ..|..+.++.+..  ..+..++..++.+|..=|.+...|..|.+ .+++.|-++++... +. .|..|+-+|..
T Consensus        80 ~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~-~~~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen   80 ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISK-NYVSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHH-HCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHH-HHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence            544 5899999999998  57778888889999888888888887775 58899999886544 44 67777777654

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.16  E-value=0.039  Score=54.28  Aligned_cols=55  Identities=18%  Similarity=0.361  Sum_probs=44.0

Q ss_pred             CcccCccCcccccCCe----------ecCCcccccHHhHHHHHhcC-CCCCCCCCcccCCCCCCch
Q 006494          271 HEFLCPVTLEIMTDPV----------IVATGQTYERESIQRWLNSN-HKTCPKTGQILDHLSLAPN  325 (643)
Q Consensus       271 ~~f~Cpi~~~~m~dPv----------~~~~g~t~~r~~I~~w~~~~-~~~cP~~~~~l~~~~l~pn  325 (643)
                      ++-.|.+|++-+-+-|          .++|+|.|.-.||.-|+--| ..+||-|.+.++...+..|
T Consensus       223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfsn  288 (328)
T KOG1734|consen  223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSN  288 (328)
T ss_pred             CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhccC
Confidence            5567999987766555          58999999999999999855 4789999998876555544

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=92.00  E-value=0.051  Score=43.33  Aligned_cols=47  Identities=21%  Similarity=0.519  Sum_probs=23.1

Q ss_pred             cccCccCccccc-C---Ceec----CCcccccHHhHHHHHhc--CC--------CCCCCCCcccC
Q 006494          272 EFLCPVTLEIMT-D---PVIV----ATGQTYERESIQRWLNS--NH--------KTCPKTGQILD  318 (643)
Q Consensus       272 ~f~Cpi~~~~m~-d---Pv~~----~~g~t~~r~~I~~w~~~--~~--------~~cP~~~~~l~  318 (643)
                      +..|+||..... +   |+++    .||++|...|+.+||..  +.        .+||.|+.++.
T Consensus         2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~   66 (70)
T PF11793_consen    2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS   66 (70)
T ss_dssp             --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred             CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence            567999998765 2   5543    58999999999999972  11        13999998875

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=91.93  E-value=0.15  Score=40.68  Aligned_cols=44  Identities=30%  Similarity=0.557  Sum_probs=32.0

Q ss_pred             cCccCcccccC----Ceec-CCcccccHHhHHHHHhcCCCCCCCCCcccC
Q 006494          274 LCPVTLEIMTD----PVIV-ATGQTYERESIQRWLNSNHKTCPKTGQILD  318 (643)
Q Consensus       274 ~Cpi~~~~m~d----Pv~~-~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~  318 (643)
                      +||=|.-=|..    ||.- -|.|.|.-+||.+|++. ...||.++++..
T Consensus        33 ~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~T-k~~CPld~q~w~   81 (88)
T COG5194          33 TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT-KGVCPLDRQTWV   81 (88)
T ss_pred             cCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhh-CCCCCCCCceeE
Confidence            45555544421    3433 58899999999999997 678999998754

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=91.93  E-value=0.069  Score=60.96  Aligned_cols=47  Identities=13%  Similarity=0.456  Sum_probs=35.8

Q ss_pred             cccCccCccccc--CCee-----cCCcccccHHhHHHHHh-cCCCCCCCCCcccC
Q 006494          272 EFLCPVTLEIMT--DPVI-----VATGQTYERESIQRWLN-SNHKTCPKTGQILD  318 (643)
Q Consensus       272 ~f~Cpi~~~~m~--dPv~-----~~~g~t~~r~~I~~w~~-~~~~~cP~~~~~l~  318 (643)
                      .-.|+||..++.  |.-.     ..|.|-|..+|+-+||. +++.+||.||..++
T Consensus      1469 ~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219        1469 HEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred             cchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence            347999999976  4322     23678899999999998 45678999996543

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=91.87  E-value=4.9  Score=43.04  Aligned_cols=239  Identities=21%  Similarity=0.205  Sum_probs=134.0

Q ss_pred             HHHHHHHHHhhcC-CCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCC-CHHHHH-HHHHHHHhcccChhh
Q 006494          360 IEEICSLIQNLSS-SQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYP-DSKIQE-HTVTALLNLSLDETN  436 (643)
Q Consensus       360 ~~~i~~Lv~~L~s-~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~-~~~~~~-~a~~~L~nLs~~~~~  436 (643)
                      .+.+..++..|.+ .+...|+.++-.|..-+ .++..|..+..+|.+..+++.+... +..... .++.++.-++.+..+
T Consensus        20 ~Dev~ylld~l~~~~~~s~Rr~sll~La~K~-~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~   98 (361)
T PF07814_consen   20 ADEVEYLLDGLESSSSSSVRRSSLLELASKC-ADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLN   98 (361)
T ss_pred             HHHHHHHHhhcccCCCccHHHHHHHHHHHHh-CCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcc
Confidence            4678888888873 35567888887777766 4789999999999999999999543 332333 334444445555444


Q ss_pred             HHHHHhcCChHHHHHHHcc--C---CHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcc---------cCChhhH
Q 006494          437 KRHIAREGAIPAIIEILQN--G---TNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLR---------YGSIRGK  502 (643)
Q Consensus       437 k~~i~~~g~i~~Lv~lL~~--~---~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~---------s~~~~~k  502 (643)
                      -..+.+.+.+..++.++..  .   .........   .+++       ++. ...+..+-..+.         ......+
T Consensus        99 ~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~---~~ls-------k~~-~~~~~~~~~~~~~~~~~~~~~~~~lsp~  167 (361)
T PF07814_consen   99 MHLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRK---KNLS-------KVQ-QKSRSLCKELLSSGSSWKSPKPPELSPQ  167 (361)
T ss_pred             hhhhhchhHHHHHHHHhccccccccccchhhhhh---hhhh-------HHH-HHHHHHHHHHHhccccccccCCcccccc
Confidence            4444456667777777761  1   000000000   0000       000 001111111110         0112233


Q ss_pred             HHHHHHHHHhh--------------cC-CCchHHHHhcCcHHHHHHHhcc----C-------C-----hhhHHHHHHHHH
Q 006494          503 KDAATALFNLS--------------IN-QSNKSRAIKAGIIPSLLKLLED----K-------A-----LGMVDEALSILQ  551 (643)
Q Consensus       503 ~~A~~aL~nLs--------------~~-~en~~~iv~~G~v~~Lv~lL~~----~-------~-----~~~~~~Al~iL~  551 (643)
                      --|..+|..++              .. +-.+.++...|++..++.++.+    .       .     -...+.++.+|.
T Consensus       168 ~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILE  247 (361)
T PF07814_consen  168 TLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILE  247 (361)
T ss_pred             cHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHH
Confidence            44555555553              11 1236777888999999999862    1       1     124567889999


Q ss_pred             HHhCC-hhhHHHHHhc--CcHHHH-HHHHhcC---ChHHHHHHHHHHHHhccCCHHHHHHHHHcCc
Q 006494          552 LLASH-PEGRNEIGRL--SFIETL-VEIIKNG---TPKNKECATSVLLELGLNNSYFILAALQYGV  610 (643)
Q Consensus       552 nLa~~-~~~~~~i~~~--g~i~~L-v~lL~~~---s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~  610 (643)
                      +.+.. .+++......  +.++.+ ..++...   .......++.++.|+..+++..+......++
T Consensus       248 s~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l  313 (361)
T PF07814_consen  248 SVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKL  313 (361)
T ss_pred             HHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHh
Confidence            88875 4556666543  333333 3333322   2344568899999999999877666554433

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=91.64  E-value=6.3  Score=37.55  Aligned_cols=93  Identities=15%  Similarity=0.194  Sum_probs=71.3

Q ss_pred             CHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHHHH
Q 006494          374 QLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEIL  453 (643)
Q Consensus       374 ~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL  453 (643)
                      ++.+|..++..+..|+...+..-.     ..++.+...|.++++.++..|+.+|..|...+-.|.   +...+..++..+
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~---k~~l~~~~l~~l   72 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV---KGQLFSRILKLL   72 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee---hhhhhHHHHHHH
Confidence            467888999999988876553222     246789999999999999999999999875543322   122337788888


Q ss_pred             ccCCHHHHHHHHHHHHHcccc
Q 006494          454 QNGTNEARENSAAALFSLSML  474 (643)
Q Consensus       454 ~~~~~~~~~~Aa~~L~~Ls~~  474 (643)
                      .+.+++++..|...+..+...
T Consensus        73 ~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   73 VDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             cCCCHHHHHHHHHHHHHHHHh
Confidence            889999999999999888754

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=91.59  E-value=5.7  Score=37.85  Aligned_cols=93  Identities=25%  Similarity=0.207  Sum_probs=71.5

Q ss_pred             CHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhc
Q 006494          457 TNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLE  536 (643)
Q Consensus       457 ~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~  536 (643)
                      ++.+|.++..++..|+....+   +. ...++.+...|+++++.+++.|+.+|.+|...+-.+.+   ...+..++.++.
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~---~v-e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k---~~l~~~~l~~l~   73 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPN---LV-EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK---GQLFSRILKLLV   73 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcH---HH-HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh---hhhhHHHHHHHc
Confidence            467888999999988754332   11 24578899999999999999999999999865433322   122367788888


Q ss_pred             cCChhhHHHHHHHHHHHhCC
Q 006494          537 DKALGMVDEALSILQLLASH  556 (643)
Q Consensus       537 ~~~~~~~~~Al~iL~nLa~~  556 (643)
                      ++++.++..|..++..+...
T Consensus        74 D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   74 DENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             CCCHHHHHHHHHHHHHHHHh
Confidence            89999999999999998886

>KOG3113 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.46  E-value=0.14  Score=50.12  Aligned_cols=52  Identities=17%  Similarity=0.321  Sum_probs=43.9

Q ss_pred             CCcccCccCcccccCCe----ecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCc
Q 006494          270 PHEFLCPVTLEIMTDPV----IVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAP  324 (643)
Q Consensus       270 p~~f~Cpi~~~~m~dPv----~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~p  324 (643)
                      ...|.|||++-.|.+-.    +-+|||.|.-.++++.-   ..+|+.|+++....++++
T Consensus       109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik---as~C~~C~a~y~~~dvIv  164 (293)
T KOG3113|consen  109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK---ASVCHVCGAAYQEDDVIV  164 (293)
T ss_pred             cceeecccccceecceEEEEEEeccceeccHHHHHHhh---hccccccCCcccccCeEe
Confidence            46799999999999865    46899999999987754   468999999999887765

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=91.26  E-value=0.95  Score=36.31  Aligned_cols=66  Identities=20%  Similarity=0.262  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhcc-CChhhHHHHHHHHHHHhCChhhHHHHHhcC
Q 006494          502 KKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLED-KALGMVDEALSILQLLASHPEGRNEIGRLS  567 (643)
Q Consensus       502 k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~-~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g  567 (643)
                      .|.|++|+.|+++.+.....+-+.++++.++++... +.-.++--|..+|.-++...++.+.+.+.|
T Consensus         4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence            578999999999988888888888999999999975 566788889999999999999999887765

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=91.14  E-value=25  Score=38.26  Aligned_cols=183  Identities=15%  Similarity=0.107  Sum_probs=110.4

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHhcccC----hhhHHHHHhcCChHHHHHHHccC-------CHHHHHHHHHHHHHcccccc
Q 006494          408 LVQLLSYPDSKIQEHTVTALLNLSLD----ETNKRHIAREGAIPAIIEILQNG-------TNEARENSAAALFSLSMLDE  476 (643)
Q Consensus       408 Lv~lL~~~~~~~~~~a~~~L~nLs~~----~~~k~~i~~~g~i~~Lv~lL~~~-------~~~~~~~Aa~~L~~Ls~~~~  476 (643)
                      +..+++..+.+-|-.|+-..-.+..+    ..||..+.++=+++.+=++|.++       +.-.+..+.++|.-++..++
T Consensus        16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE   95 (698)
T KOG2611|consen   16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE   95 (698)
T ss_pred             HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence            44445444444444444444444433    35777888887888888888653       22356677788888887776


Q ss_pred             c--cchhhccCChHHHHHHcccC-Chh------hHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCC-hhhHHHH
Q 006494          477 N--RVMVGNLNGIPPLVNLLRYG-SIR------GKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKA-LGMVDEA  546 (643)
Q Consensus       477 ~--k~~i~~~g~i~~Lv~lL~s~-~~~------~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~-~~~~~~A  546 (643)
                      .  -..+.  ..||.|..++..+ +++      ...++..+|+.++..+.....++..|+++.+-++-.-++ ..-...|
T Consensus        96 lAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~ala  173 (698)
T KOG2611|consen   96 LASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMALA  173 (698)
T ss_pred             hccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHHH
Confidence            3  22232  4789999998654 333      677889999999999999999999999999998765422 2223344


Q ss_pred             HHHHHHHhCC----hhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHh
Q 006494          547 LSILQLLASH----PEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLEL  594 (643)
Q Consensus       547 l~iL~nLa~~----~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L  594 (643)
                      +.++.-+...    ++.-..+..  .|..+..=+..-....|-.++.+|..+
T Consensus       174 l~Vlll~~~~~~cw~e~~~~fla--li~~va~df~~~~~a~KfElc~lL~~v  223 (698)
T KOG2611|consen  174 LKVLLLLVSKLDCWSETIERFLA--LIAAVARDFAVLHNALKFELCHLLSAV  223 (698)
T ss_pred             HHHHHHHHHhcccCcCCHHHHHH--HHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            4444444432    223333322  233333333333344455556666543

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.12  E-value=0.064  Score=39.42  Aligned_cols=46  Identities=20%  Similarity=0.245  Sum_probs=38.5

Q ss_pred             ccCccCcccccCCeecCCccc-ccHHhHHHHHhcCCCCCCCCCcccC
Q 006494          273 FLCPVTLEIMTDPVIVATGQT-YERESIQRWLNSNHKTCPKTGQILD  318 (643)
Q Consensus       273 f~Cpi~~~~m~dPv~~~~g~t-~~r~~I~~w~~~~~~~cP~~~~~l~  318 (643)
                      -.|.||.+--.|-|+-.|||- .|..|=.+.+..++..||.||.++.
T Consensus         8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~   54 (62)
T KOG4172|consen    8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK   54 (62)
T ss_pred             cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence            349999999999999999995 7888877777767889999998764

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=90.91  E-value=0.19  Score=52.63  Aligned_cols=49  Identities=16%  Similarity=0.413  Sum_probs=41.0

Q ss_pred             CCcccCccCcccccCCe-----e---cCCcccccHHhHHHHHhcCC------CCCCCCCcccC
Q 006494          270 PHEFLCPVTLEIMTDPV-----I---VATGQTYERESIQRWLNSNH------KTCPKTGQILD  318 (643)
Q Consensus       270 p~~f~Cpi~~~~m~dPv-----~---~~~g~t~~r~~I~~w~~~~~------~~cP~~~~~l~  318 (643)
                      -.++.|-||++...+++     .   .+|.|+||-.||.+|-....      ..||+|+.+..
T Consensus       159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~  221 (344)
T KOG1039|consen  159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS  221 (344)
T ss_pred             cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence            46889999999999998     4   56999999999999996433      56999997754

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=90.87  E-value=0.13  Score=52.45  Aligned_cols=47  Identities=17%  Similarity=0.203  Sum_probs=39.9

Q ss_pred             CcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccC
Q 006494          271 HEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILD  318 (643)
Q Consensus       271 ~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~  318 (643)
                      ++-.||||.---..-|+.||||.-|..||.+++-+ ...|=+|+....
T Consensus       421 Ed~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN-~k~CFfCktTv~  467 (489)
T KOG4692|consen  421 EDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMN-CKRCFFCKTTVI  467 (489)
T ss_pred             ccccCcceecccchhhccCCCCchHHHHHHHHHhc-CCeeeEecceee
Confidence            67899999998888999999999999999999986 466777765443

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=90.76  E-value=17  Score=43.41  Aligned_cols=221  Identities=14%  Similarity=0.114  Sum_probs=129.9

Q ss_pred             hHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCC-HHHHHHHHHHHHhcccChhhH
Q 006494          359 LIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPD-SKIQEHTVTALLNLSLDETNK  437 (643)
Q Consensus       359 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~nLs~~~~~k  437 (643)
                      -+..+..|++.|++.+..++-.|++.+..++.+.|   ..+++ .+|...+.++.-.+ ...=..++.+|..|+.---..
T Consensus       339 vE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp---~~Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLl  414 (1133)
T KOG1943|consen  339 VEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP---PELAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLL  414 (1133)
T ss_pred             HHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc---HHHHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcc
Confidence            45778888899999999999999999999998777   33333 25566666665433 333346777777665321111


Q ss_pred             HHHHhcCChHHHHHHHcc----C----CHHHHHHHHHHHHHcccccccc--chhhccCChHHHHHHcccCChhhHHHHHH
Q 006494          438 RHIAREGAIPAIIEILQN----G----TNEARENSAAALFSLSMLDENR--VMVGNLNGIPPLVNLLRYGSIRGKKDAAT  507 (643)
Q Consensus       438 ~~i~~~g~i~~Lv~lL~~----~----~~~~~~~Aa~~L~~Ls~~~~~k--~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~  507 (643)
                      .... ...+|.+++-|.-    |    ...+|..|+.+++.++...+..  ..+...=+-..|+..+-+.....++.|..
T Consensus       415 ps~l-~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsA  493 (1133)
T KOG1943|consen  415 PSLL-EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASA  493 (1133)
T ss_pred             hHHH-HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHH
Confidence            1111 1234445544421    1    2358899999999998544432  11111001112223334456677888888


Q ss_pred             HHHHhhcCCCch--------------------------HHHHh-cCcHHHHHHHhcc-----CChhhHHHHHHHHHHHhC
Q 006494          508 ALFNLSINQSNK--------------------------SRAIK-AGIIPSLLKLLED-----KALGMVDEALSILQLLAS  555 (643)
Q Consensus       508 aL~nLs~~~en~--------------------------~~iv~-~G~v~~Lv~lL~~-----~~~~~~~~Al~iL~nLa~  555 (643)
                      |+........|.                          ..+.+ .|...++++-|..     -+..+.+.+..+|.+|+.
T Consensus       494 AlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~  573 (1133)
T KOG1943|consen  494 ALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSL  573 (1133)
T ss_pred             HHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH
Confidence            888765433322                          11112 4555666655532     466789999999999887


Q ss_pred             ChhhHHHHHhcCcHHHHHHHHhcCChHHHHHH
Q 006494          556 HPEGRNEIGRLSFIETLVEIIKNGTPKNKECA  587 (643)
Q Consensus       556 ~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A  587 (643)
                      ..   ......+.+++++....+.+...+.-+
T Consensus       574 ~~---pk~~a~~~L~~lld~~ls~~~~~r~g~  602 (1133)
T KOG1943|consen  574 TE---PKYLADYVLPPLLDSTLSKDASMRHGV  602 (1133)
T ss_pred             hh---HHhhcccchhhhhhhhcCCChHHhhhh
Confidence            52   233445677888777766666555433

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=90.74  E-value=6.2  Score=41.00  Aligned_cols=163  Identities=15%  Similarity=0.147  Sum_probs=108.7

Q ss_pred             HHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCch--HH-------
Q 006494          451 EILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNK--SR-------  521 (643)
Q Consensus       451 ~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~--~~-------  521 (643)
                      .-+++.+..+|+.|..+|+-.+..+..   + ....++.+...++.++..++..|+.+++.+....+..  ..       
T Consensus        34 P~v~~~~~~vR~~al~cLGl~~Lld~~---~-a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~  109 (298)
T PF12719_consen   34 PAVQSSDPAVRELALKCLGLCCLLDKE---L-AKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDES  109 (298)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHhChH---H-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCcc
Confidence            556788899999999999998876652   1 1235677888888889999999999999987643321  11       


Q ss_pred             HHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhc----CChHHHHHHHHHHHHhccC
Q 006494          522 AIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKN----GTPKNKECATSVLLELGLN  597 (643)
Q Consensus       522 iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~----~s~~~ke~A~~~L~~L~~~  597 (643)
                      .-....+..+.+.+.+.+++++..|+..++.|-.+.....   ...++..|+-+.-+    .+++.|+.-...+-..|..
T Consensus       110 ~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s  186 (298)
T PF12719_consen  110 VDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASS  186 (298)
T ss_pred             chHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcC
Confidence            1124567778888887888899999999998777543221   12344444444332    2345565555556666776


Q ss_pred             CHHHHHHHHHcCcHHHHHHHHhhC
Q 006494          598 NSYFILAALQYGVYEHLVEITRCG  621 (643)
Q Consensus       598 ~~~~~~~~~~~g~i~~L~~ll~~g  621 (643)
                      ++.+.. .+..+.++.+..+....
T Consensus       187 ~~~~Q~-~l~~~f~~~l~~~~~~~  209 (298)
T PF12719_consen  187 SPENQE-RLAEAFLPTLRTLSNAP  209 (298)
T ss_pred             CHHHHH-HHHHHHHHHHHHHHhCc
Confidence            666644 44556777777776544

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=90.45  E-value=0.13  Score=40.66  Aligned_cols=31  Identities=23%  Similarity=0.464  Sum_probs=25.4

Q ss_pred             cCCcccccHHhHHHHHhcC--CCCCCCCCcccC
Q 006494          288 VATGQTYERESIQRWLNSN--HKTCPKTGQILD  318 (643)
Q Consensus       288 ~~~g~t~~r~~I~~w~~~~--~~~cP~~~~~l~  318 (643)
                      -.|.|.|-..||.+|++..  ...||+||+...
T Consensus        49 G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~   81 (84)
T KOG1493|consen   49 GYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ   81 (84)
T ss_pred             HHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence            3689999999999999843  356999998654

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=90.40  E-value=3.9  Score=43.16  Aligned_cols=197  Identities=14%  Similarity=0.106  Sum_probs=141.2

Q ss_pred             HHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccCh-hh-----HHHHHhcCChHHHHHHHcc--CCHHHHHHHHHHHHH
Q 006494          399 IANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDE-TN-----KRHIAREGAIPAIIEILQN--GTNEARENSAAALFS  470 (643)
Q Consensus       399 i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~-~~-----k~~i~~~g~i~~Lv~lL~~--~~~~~~~~Aa~~L~~  470 (643)
                      +...|.+..|+..|..-+.+++..++.+..++-... ++     ...+...  -+-++..|-.  ++++....+...|..
T Consensus        72 i~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~--~peil~~L~~gy~~~dial~~g~mlRe  149 (335)
T PF08569_consen   72 IYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERH--RPEILDILLRGYENPDIALNCGDMLRE  149 (335)
T ss_dssp             HHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT----THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhC--CHHHHHHHHHHhcCccccchHHHHHHH
Confidence            344688889999999889999999999888875322 22     2223321  1223333322  245666777888888


Q ss_pred             ccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhc-CCCchHHHHhc---CcHHHHHHHhccCChhhHHHH
Q 006494          471 LSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSI-NQSNKSRAIKA---GIIPSLLKLLEDKALGMVDEA  546 (643)
Q Consensus       471 Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~-~~en~~~iv~~---G~v~~Lv~lL~~~~~~~~~~A  546 (643)
                      ....+.....|.....+..+.+.++.++=++.-+|..++..|-. ++.-...+...   ..+.....+|.+++=-.+..+
T Consensus       150 c~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqs  229 (335)
T PF08569_consen  150 CIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQS  229 (335)
T ss_dssp             HTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHH
T ss_pred             HHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhh
Confidence            88777777778888889999999999998999999999998665 44455666653   456677888888777788999


Q ss_pred             HHHHHHHhCChhhHHHHHh----cCcHHHHHHHHhcCChHHHHHHHHHHHHhccC
Q 006494          547 LSILQLLASHPEGRNEIGR----LSFIETLVEIIKNGTPKNKECATSVLLELGLN  597 (643)
Q Consensus       547 l~iL~nLa~~~~~~~~i~~----~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~  597 (643)
                      +..|..|-..+.+...+..    ..-+..++.+|++.|...|-.|..+.--...+
T Consensus       230 lkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN  284 (335)
T PF08569_consen  230 LKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN  284 (335)
T ss_dssp             HHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence            9999999998877665543    35688889999999999999999988766654

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=90.29  E-value=0.13  Score=53.29  Aligned_cols=47  Identities=23%  Similarity=0.379  Sum_probs=41.0

Q ss_pred             cCccCcccccCCeecCCcccccHHhHHHHHhc-CCCCCCCCCcccCCC
Q 006494          274 LCPVTLEIMTDPVIVATGQTYERESIQRWLNS-NHKTCPKTGQILDHL  320 (643)
Q Consensus       274 ~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~-~~~~cP~~~~~l~~~  320 (643)
                      .|-||-+==+|--|-||||-.|-.|+..|-.+ +..+||+||-.+.-+
T Consensus       371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt  418 (563)
T KOG1785|consen  371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT  418 (563)
T ss_pred             HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence            68999999999989999999999999999964 368999999877643

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=90.28  E-value=6.4  Score=45.94  Aligned_cols=188  Identities=19%  Similarity=0.234  Sum_probs=124.5

Q ss_pred             HHHHHHHHHhhcC-CCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhccc--Chhh
Q 006494          360 IEEICSLIQNLSS-SQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSL--DETN  436 (643)
Q Consensus       360 ~~~i~~Lv~~L~s-~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~--~~~~  436 (643)
                      +..+....+.+.. .++.++..++..+.++++.-+.   .....+.++.+..+.......+++.|+..+.++..  +...
T Consensus       235 k~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~---~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~  311 (759)
T KOG0211|consen  235 KRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLES---EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD  311 (759)
T ss_pred             HHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHH---HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch
Confidence            3455555655553 4566777777788877754332   55667888999999988888889988888877642  1221


Q ss_pred             HHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhc--
Q 006494          437 KRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSI--  514 (643)
Q Consensus       437 k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~--  514 (643)
                         =......+.++....+++...+...+.....|+..-.-  ..+...-+++...+++....++...++.-...++.  
T Consensus       312 ---d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l  386 (759)
T KOG0211|consen  312 ---DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYL  386 (759)
T ss_pred             ---hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhc
Confidence               11234677888888889999988888887777532222  34445567778888777666666666665555554  


Q ss_pred             CCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhC
Q 006494          515 NQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLAS  555 (643)
Q Consensus       515 ~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~  555 (643)
                      +.+....+...-++|.+..++.+.+..+....+.....++.
T Consensus       387 ~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p  427 (759)
T KOG0211|consen  387 NASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSP  427 (759)
T ss_pred             CcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCc
Confidence            33345555566668888888877777776666666665543

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=89.90  E-value=21  Score=39.76  Aligned_cols=149  Identities=11%  Similarity=0.010  Sum_probs=98.2

Q ss_pred             hHHHHHHHHHhhcC-------CCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcc
Q 006494          359 LIEEICSLIQNLSS-------SQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLS  431 (643)
Q Consensus       359 ~~~~i~~Lv~~L~s-------~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs  431 (643)
                      -.+.+|.|+++|..       ++|.....|..+|...+..   ....|.+. ++.++-.-+.++++.-++.|+.++...-
T Consensus       319 v~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~---~gd~i~~p-Vl~FvEqni~~~~w~nreaavmAfGSvm  394 (858)
T COG5215         319 VADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQL---KGDKIMRP-VLGFVEQNIRSESWANREAAVMAFGSVM  394 (858)
T ss_pred             HHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHH---hhhHhHHH-HHHHHHHhccCchhhhHHHHHHHhhhhh
Confidence            45688999999964       3556777777788776632   12223332 4444445667788999999999998765


Q ss_pred             cCh--hhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHccc---CChhhHHHHH
Q 006494          432 LDE--TNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRY---GSIRGKKDAA  506 (643)
Q Consensus       432 ~~~--~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s---~~~~~k~~A~  506 (643)
                      ..+  .....++ ..++|.|...+.+....++..+|+++..++.  .....|...|-++..++-.--   +.+....++.
T Consensus       395 ~gp~~~~lT~~V-~qalp~i~n~m~D~~l~vk~ttAwc~g~iad--~va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncs  471 (858)
T COG5215         395 HGPCEDCLTKIV-PQALPGIENEMSDSCLWVKSTTAWCFGAIAD--HVAMIISPCGHLVLEVSASLIGLMDCPFRSINCS  471 (858)
T ss_pred             cCccHHHHHhhH-HhhhHHHHHhcccceeehhhHHHHHHHHHHH--HHHHhcCccccccHHHHHHHhhhhccchHHhhhH
Confidence            433  2333444 3578999988887777888999999998873  223333445555555544332   3566777888


Q ss_pred             HHHHHhhc
Q 006494          507 TALFNLSI  514 (643)
Q Consensus       507 ~aL~nLs~  514 (643)
                      +...||..
T Consensus       472 w~~~nlv~  479 (858)
T COG5215         472 WRKENLVD  479 (858)
T ss_pred             HHHHhHHH
Confidence            88888875

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=89.80  E-value=2.5  Score=40.40  Aligned_cols=110  Identities=18%  Similarity=0.185  Sum_probs=76.1

Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhh-HHHHHhhCChHHHHHHhcC---------CCHHHHHHHHHHHHhc
Q 006494          361 EEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDN-RILIANNGGIRPLVQLLSY---------PDSKIQEHTVTALLNL  430 (643)
Q Consensus       361 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~-r~~i~~~g~i~~Lv~lL~~---------~~~~~~~~a~~~L~nL  430 (643)
                      .....++..|.+.....  +.+..|+...+..+.. -..|.+.||+..|+.+|..         .+...+..++.+|..+
T Consensus        66 ~~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal  143 (187)
T PF06371_consen   66 SSPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL  143 (187)
T ss_dssp             HHHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence            45566677776544332  4455555444444332 4456678999999998863         3457788899999998


Q ss_pred             ccChhhHHHHH-hcCChHHHHHHHccCCHHHHHHHHHHHHHcc
Q 006494          431 SLDETNKRHIA-REGAIPAIIEILQNGTNEARENSAAALFSLS  472 (643)
Q Consensus       431 s~~~~~k~~i~-~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls  472 (643)
                      ..+..+...+. ..+++..|+..|.+.+..++..+.-+|..++
T Consensus       144 ~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  144 MNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             TSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred             HccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            88888877777 6889999999999999999999988887764

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=89.80  E-value=6.9  Score=44.07  Aligned_cols=160  Identities=16%  Similarity=0.181  Sum_probs=101.9

Q ss_pred             cCCCHHHHHHHHHHHHHhhhhChhhHHHHH---hhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHHhcCChH
Q 006494          371 SSSQLNIKRDSVMKIRMLSKENPDNRILIA---NNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIP  447 (643)
Q Consensus       371 ~s~~~~~~~~Al~~L~~La~~~~~~r~~i~---~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~  447 (643)
                      -.-.++.+.-|+..||.+.++...+-..+-   .+..+..++..+. .++..+..++++|.|+-.++.++..+...  ..
T Consensus       554 ~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~--~~  630 (745)
T KOG0301|consen  554 LQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSR--LE  630 (745)
T ss_pred             hcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHH--HH
Confidence            344677888899999999877665544332   1235555666665 46778889999999999998888888743  23


Q ss_pred             HHHHHH---ccC-CHHHHHHHHHHHHHccc--cccccchhhccCChHHHHHHcccC-----ChhhHHHHHHHHHHhhcCC
Q 006494          448 AIIEIL---QNG-TNEARENSAAALFSLSM--LDENRVMVGNLNGIPPLVNLLRYG-----SIRGKKDAATALFNLSINQ  516 (643)
Q Consensus       448 ~Lv~lL---~~~-~~~~~~~Aa~~L~~Ls~--~~~~k~~i~~~g~i~~Lv~lL~s~-----~~~~k~~A~~aL~nLs~~~  516 (643)
                      .+..-+   +++ +...+...+...+|++.  ...+- +   .+..+.|...+...     +.+....++.||.+|+..+
T Consensus       631 ~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~-~---~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~  706 (745)
T KOG0301|consen  631 SILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNE-Q---LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVD  706 (745)
T ss_pred             HHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhccc-c---cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhcccc
Confidence            232222   233 34455545555556552  22221 1   34555555554322     3356677788999999988


Q ss_pred             CchHHHHhcCcHHHHHHHhcc
Q 006494          517 SNKSRAIKAGIIPSLLKLLED  537 (643)
Q Consensus       517 en~~~iv~~G~v~~Lv~lL~~  537 (643)
                      .+..++...--+..+..-+++
T Consensus       707 ~~~~~~A~~~~v~sia~~~~~  727 (745)
T KOG0301|consen  707 ASVIQLAKNRSVDSIAKKLKE  727 (745)
T ss_pred             HHHHHHHHhcCHHHHHHHHHH
Confidence            888888776677777777765

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=89.57  E-value=3.7  Score=41.43  Aligned_cols=94  Identities=18%  Similarity=0.240  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhc-CCCHHHHHHHHHHHHhc-ccChhhHHHHHhcCChHHHHHHHc
Q 006494          377 IKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLS-YPDSKIQEHTVTALLNL-SLDETNKRHIAREGAIPAIIEILQ  454 (643)
Q Consensus       377 ~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~nL-s~~~~~k~~i~~~g~i~~Lv~lL~  454 (643)
                      ....|++.|.-++--++..|..+....++..|+.+|. ...+.++..++.+|..+ ..++.|...+-+.+|+..++.+++
T Consensus       107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk  186 (257)
T PF08045_consen  107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK  186 (257)
T ss_pred             HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence            3456777777777778999999999999999999994 45788999998888765 467889888889999999999998


Q ss_pred             cC--CHHHHHHHHHHHHH
Q 006494          455 NG--TNEARENSAAALFS  470 (643)
Q Consensus       455 ~~--~~~~~~~Aa~~L~~  470 (643)
                      +.  +.+++-..+-.|+-
T Consensus       187 ~~~~~~~~r~K~~EFL~f  204 (257)
T PF08045_consen  187 SKSTDRELRLKCIEFLYF  204 (257)
T ss_pred             cccccHHHhHHHHHHHHH
Confidence            75  45666666665543

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=89.54  E-value=7.5  Score=40.38  Aligned_cols=181  Identities=18%  Similarity=0.168  Sum_probs=113.9

Q ss_pred             HHhcCCCHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccc--cc-------h
Q 006494          410 QLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDEN--RV-------M  480 (643)
Q Consensus       410 ~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~--k~-------~  480 (643)
                      ..+.+.++.+++.|+.+|.-.+.-+.   .++. ..++.+...++.++.+++..|..+++.+......  -.       .
T Consensus        34 P~v~~~~~~vR~~al~cLGl~~Lld~---~~a~-~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~  109 (298)
T PF12719_consen   34 PAVQSSDPAVRELALKCLGLCCLLDK---ELAK-EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDES  109 (298)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHhCh---HHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCcc
Confidence            56778899999999999988775443   1221 2477788888778999999999999998643321  11       1


Q ss_pred             hhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccC----ChhhHHHHHHHHHHHhCC
Q 006494          481 VGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDK----ALGMVDEALSILQLLASH  556 (643)
Q Consensus       481 i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~----~~~~~~~Al~iL~nLa~~  556 (643)
                      ......+..+.+.+.+.++.++..|+..+.-|..+.....   ...++..|+-+..++    +..+...--..+-..+..
T Consensus       110 ~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s  186 (298)
T PF12719_consen  110 VDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASS  186 (298)
T ss_pred             chHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcC
Confidence            2224567788888888898999999999998876544433   234455565555442    234444444445566655


Q ss_pred             hhhHHHHHhcCcHHHHHHHHhcCC----hHH---HHHHHHHHHHhccC
Q 006494          557 PEGRNEIGRLSFIETLVEIIKNGT----PKN---KECATSVLLELGLN  597 (643)
Q Consensus       557 ~~~~~~i~~~g~i~~Lv~lL~~~s----~~~---ke~A~~~L~~L~~~  597 (643)
                      ....+......+++.+-.+.+...    +..   -.+.+..+..++..
T Consensus       187 ~~~~Q~~l~~~f~~~l~~~~~~~~~~~~~~~~v~~~~v~~~lv~lt~~  234 (298)
T PF12719_consen  187 SPENQERLAEAFLPTLRTLSNAPDELDSPLAMVSPSQVASFLVDLTDP  234 (298)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCcccccCchhhCCHHHHHHHHHHHCCh
Confidence            443334444567787777765432    211   22445555666653

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=89.45  E-value=0.78  Score=40.45  Aligned_cols=70  Identities=24%  Similarity=0.363  Sum_probs=56.2

Q ss_pred             cHHHHHHHhcc-CChhhHHHHHHHHHHHhCC-hhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhcc
Q 006494          527 IIPSLLKLLED-KALGMVDEALSILQLLASH-PEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGL  596 (643)
Q Consensus       527 ~v~~Lv~lL~~-~~~~~~~~Al~iL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~  596 (643)
                      ++..|+++|.. .++.+..-|+.=|..++.+ |.|+..+-..|+=..+++++.+.++++|..|+.++-.+-.
T Consensus        44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~  115 (119)
T PF11698_consen   44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV  115 (119)
T ss_dssp             HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            57789999943 5566667778888888886 8899888888999999999999999999999998876543

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=89.06  E-value=4.5  Score=40.83  Aligned_cols=96  Identities=17%  Similarity=0.190  Sum_probs=80.5

Q ss_pred             hHHHHHHHHHHHhC-ChhhHHHHHhcCcHHHHHHHHh-cCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHh
Q 006494          542 MVDEALSILQLLAS-HPEGRNEIGRLSFIETLVEIIK-NGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITR  619 (643)
Q Consensus       542 ~~~~Al~iL~nLa~-~~~~~~~i~~~g~i~~Lv~lL~-~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~  619 (643)
                      ....|+.+|.-++- ||..+..+.+...+..++.+|. +..+.++-.++.+|..+...++.+.....+.+++..+..++.
T Consensus       107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk  186 (257)
T PF08045_consen  107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK  186 (257)
T ss_pred             HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence            34557777877666 6888999998999999999994 467889999999999999999999999999999999999997


Q ss_pred             hC--CHHHHHHHHHHHHHhh
Q 006494          620 CG--TNRGQRKANSLLQHMS  637 (643)
Q Consensus       620 ~g--~~~~k~~A~~lL~~l~  637 (643)
                      +.  +...|-|..+.|....
T Consensus       187 ~~~~~~~~r~K~~EFL~fyl  206 (257)
T PF08045_consen  187 SKSTDRELRLKCIEFLYFYL  206 (257)
T ss_pred             cccccHHHhHHHHHHHHHHH
Confidence            65  5678888888887554

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=88.83  E-value=8.9  Score=46.09  Aligned_cols=255  Identities=15%  Similarity=0.118  Sum_probs=137.0

Q ss_pred             CHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhccc----ChhhHHHHHhcCChHHH
Q 006494          374 QLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSL----DETNKRHIAREGAIPAI  449 (643)
Q Consensus       374 ~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~----~~~~k~~i~~~g~i~~L  449 (643)
                      ..+.+..|+.-|..|+.....-   ..-.-.+|+++.++.++..++|..|+.+|..+-.    -+..-..|.-.-.+|.|
T Consensus       436 ~~~tK~~ALeLl~~lS~~i~de---~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L  512 (1431)
T KOG1240|consen  436 TIQTKLAALELLQELSTYIDDE---VKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHL  512 (1431)
T ss_pred             cchhHHHHHHHHHHHhhhcchH---HHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhh
Confidence            3467788999999888643221   1112368999999999999999999888876531    12233344444577888


Q ss_pred             HHHHccC-CHHHHHHHHHHHHHccc------------------cccccchhhc----c------CChHHHH-HHcccCCh
Q 006494          450 IEILQNG-TNEARENSAAALFSLSM------------------LDENRVMVGN----L------NGIPPLV-NLLRYGSI  499 (643)
Q Consensus       450 v~lL~~~-~~~~~~~Aa~~L~~Ls~------------------~~~~k~~i~~----~------g~i~~Lv-~lL~s~~~  499 (643)
                      -+++.+. ...+|..=|..|..|+.                  ++.+-+...+    .      ..+..++ .+|....+
T Consensus       513 ~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~  592 (1431)
T KOG1240|consen  513 NHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPP  592 (1431)
T ss_pred             HhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCch
Confidence            8888763 33444433444433331                  1111111111    0      1222333 33333344


Q ss_pred             hhHHHHHHHHHHhhcC-CCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhc
Q 006494          500 RGKKDAATALFNLSIN-QSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKN  578 (643)
Q Consensus       500 ~~k~~A~~aL~nLs~~-~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~  578 (643)
                      -+|+.-+..|.-||.. ...+   ...=.++.|+..|.+.+..+.-.-..-+.-+|..-.-|  -++...+|.|..-|.+
T Consensus       593 ~Vkr~Lle~i~~LC~FFGk~k---sND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r--s~seyllPLl~Q~ltD  667 (1431)
T KOG1240|consen  593 IVKRALLESIIPLCVFFGKEK---SNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR--SVSEYLLPLLQQGLTD  667 (1431)
T ss_pred             HHHHHHHHHHHHHHHHhhhcc---cccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee--eHHHHHHHHHHHhccC
Confidence            5555555566666641 1000   01124566677776654443322223232222221111  1234567777777777


Q ss_pred             CChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494          579 GTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK  638 (643)
Q Consensus       579 ~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~  638 (643)
                      +.+.+-..|+..|..||..+--....+.+  ++.-..-++-..+.-+|+.+..++....+
T Consensus       668 ~EE~Viv~aL~~ls~Lik~~ll~K~~v~~--i~~~v~PlL~hPN~WIR~~~~~iI~~~~~  725 (1431)
T KOG1240|consen  668 GEEAVIVSALGSLSILIKLGLLRKPAVKD--ILQDVLPLLCHPNLWIRRAVLGIIAAIAR  725 (1431)
T ss_pred             cchhhHHHHHHHHHHHHHhcccchHHHHH--HHHhhhhheeCchHHHHHHHHHHHHHHHh
Confidence            88888888888888888754322222211  23333345556677888888887765543

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=88.78  E-value=0.36  Score=35.08  Aligned_cols=43  Identities=23%  Similarity=0.330  Sum_probs=22.1

Q ss_pred             CccCcccc--cCCeec--CCcccccHHhHHHHHhcCCCCCCCCCccc
Q 006494          275 CPVTLEIM--TDPVIV--ATGQTYERESIQRWLNSNHKTCPKTGQIL  317 (643)
Q Consensus       275 Cpi~~~~m--~dPv~~--~~g~t~~r~~I~~w~~~~~~~cP~~~~~l  317 (643)
                      ||+|.+-|  +|--+.  +||+.+||.|..+-...++..||-|+++.
T Consensus         1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred             CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence            78888887  233344  47999999998888776678999999874

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=88.76  E-value=0.11  Score=58.34  Aligned_cols=48  Identities=23%  Similarity=0.409  Sum_probs=40.3

Q ss_pred             CcccCccCcccccCCee---cCCcccccHHhHHHHHhcCCCCCCCCCcccCC
Q 006494          271 HEFLCPVTLEIMTDPVI---VATGQTYERESIQRWLNSNHKTCPKTGQILDH  319 (643)
Q Consensus       271 ~~f~Cpi~~~~m~dPv~---~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~  319 (643)
                      .+-.||+|..-+.|-.+   .+|||-||.+||..|... ..+||.|+..+..
T Consensus       122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~-aqTCPiDR~EF~~  172 (1134)
T KOG0825|consen  122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC-AQTCPVDRGEFGE  172 (1134)
T ss_pred             hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhh-cccCchhhhhhhe
Confidence            34579999999998876   469999999999999986 5899999987653

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=88.49  E-value=0.11  Score=59.50  Aligned_cols=50  Identities=16%  Similarity=0.407  Sum_probs=41.5

Q ss_pred             ccCccCcccccCCeecCCcccccHHhHHHHHhcCC-CCCCCCCcccCCCCCC
Q 006494          273 FLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNH-KTCPKTGQILDHLSLA  323 (643)
Q Consensus       273 f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~-~~cP~~~~~l~~~~l~  323 (643)
                      +.|+||.+ ..+|+++.|||-||+.|+.+.+.... ..||.|+..+....+.
T Consensus       455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~  505 (674)
T KOG1001|consen  455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKLL  505 (674)
T ss_pred             cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHHh
Confidence            89999999 88899999999999999999998433 3599998877654433

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=88.41  E-value=7.8  Score=45.11  Aligned_cols=176  Identities=13%  Similarity=0.078  Sum_probs=121.2

Q ss_pred             CHHHHHHHHHHHHHccccccccchhhc--cCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHH
Q 006494          457 TNEARENSAAALFSLSMLDENRVMVGN--LNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKL  534 (643)
Q Consensus       457 ~~~~~~~Aa~~L~~Ls~~~~~k~~i~~--~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~l  534 (643)
                      .+.++..|+.++.....    ...+..  .+.+..|.++....+.++...-+.+|...+...+......++-+.|..+.+
T Consensus       504 ~~~~ki~a~~~~~~~~~----~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~l  579 (1005)
T KOG2274|consen  504 PPPVKISAVRAFCGYCK----VKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINL  579 (1005)
T ss_pred             CCchhHHHHHHHHhccC----ceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHH
Confidence            34455556665555441    112222  567788888887777777777888899999887777777888888888888


Q ss_pred             hcc--CChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCC----hHHHHHHHHHHHHhccCCHHHHHHHHHc
Q 006494          535 LED--KALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGT----PKNKECATSVLLELGLNNSYFILAALQY  608 (643)
Q Consensus       535 L~~--~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s----~~~ke~A~~~L~~L~~~~~~~~~~~~~~  608 (643)
                      +..  .++.+...+-.++..|+....+..-+.+ -.+|.++..|....    .....-|+.+|-.+.++.+.-.....-.
T Consensus       580 F~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e-~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~  658 (1005)
T KOG2274|consen  580 FLKYSEDPQVASLAQDLFEELLQIAANYGPMQE-RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLIC  658 (1005)
T ss_pred             HHHhcCCchHHHHHHHHHHHHHHHHHhhcchHH-HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHH
Confidence            743  6778888888888888875544444433 57999999997644    4556677788887777765433322333


Q ss_pred             CcHHHHHHHH-hhCCHHHHHHHHHHHHHhh
Q 006494          609 GVYEHLVEIT-RCGTNRGQRKANSLLQHMS  637 (643)
Q Consensus       609 g~i~~L~~ll-~~g~~~~k~~A~~lL~~l~  637 (643)
                      -+.|++.+.. ++++...-..|.++|+.+-
T Consensus       659 ~~FpaVak~tlHsdD~~tlQ~~~EcLra~I  688 (1005)
T KOG2274|consen  659 YAFPAVAKITLHSDDHETLQNATECLRALI  688 (1005)
T ss_pred             HHhHHhHhheeecCChHHHHhHHHHHHHHH
Confidence            4677777754 5666677789999998764

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=88.36  E-value=3  Score=46.72  Aligned_cols=121  Identities=17%  Similarity=0.180  Sum_probs=74.5

Q ss_pred             cCCHHHHHHHHHHHHHccc-cccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcC-CCchHHHHhcCcHHHHH
Q 006494          455 NGTNEARENSAAALFSLSM-LDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSIN-QSNKSRAIKAGIIPSLL  532 (643)
Q Consensus       455 ~~~~~~~~~Aa~~L~~Ls~-~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~-~en~~~iv~~G~v~~Lv  532 (643)
                      .|+...+..|+..+...-. .++.     +..+|..+++|..+++..+++.|+..|-.+|.. ++...+++     ..|+
T Consensus        33 kg~~k~K~Laaq~I~kffk~FP~l-----~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kva-----DvL~  102 (556)
T PF05918_consen   33 KGSPKEKRLAAQFIPKFFKHFPDL-----QEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVA-----DVLV  102 (556)
T ss_dssp             GS-HHHHHHHHHHHHHHHCC-GGG-----HHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHH-----HHHH
T ss_pred             cCCHHHHHHHHHHHHHHHhhChhh-----HHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHH-----HHHH
Confidence            3678888889998887643 2332     235889999999999999999999999999984 56777764     4688


Q ss_pred             HHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHh---cCChHHHHHHHHHHH
Q 006494          533 KLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIK---NGTPKNKECATSVLL  592 (643)
Q Consensus       533 ~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~---~~s~~~ke~A~~~L~  592 (643)
                      ++|..+++.-...+=.+|..|-...       ..+.+..+...+.   ++++.+|+.++..|.
T Consensus       103 QlL~tdd~~E~~~v~~sL~~ll~~d-------~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~  158 (556)
T PF05918_consen  103 QLLQTDDPVELDAVKNSLMSLLKQD-------PKGTLTGLFSQIESSKSGDEQVRERALKFLR  158 (556)
T ss_dssp             HHTT---HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred             HHHhcccHHHHHHHHHHHHHHHhcC-------cHHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence            9998765544444444444433311       1234444544444   567778888887664

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=88.24  E-value=8.7  Score=44.17  Aligned_cols=236  Identities=15%  Similarity=0.108  Sum_probs=144.9

Q ss_pred             hHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHH-hcccChhhHHHHHhcCChHHHHHHHccCC-HHHHHHHHHHHHHcc
Q 006494          395 NRILIANNGGIRPLVQLLSYPDSKIQEHTVTALL-NLSLDETNKRHIAREGAIPAIIEILQNGT-NEARENSAAALFSLS  472 (643)
Q Consensus       395 ~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~-nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~-~~~~~~Aa~~L~~Ls  472 (643)
                      .|...+..|+...|.++..........+...+|. .++...+ +    ....++++...+.+.. .-..-.+.-++.||+
T Consensus       496 ~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~-~----~~~v~~~~~s~~~~d~~~~en~E~L~altnLa  570 (748)
T KOG4151|consen  496 ERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGE-R----SYEVVKPLDSALHNDEKGLENFEALEALTNLA  570 (748)
T ss_pred             hcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCC-c----hhhhhhhhcchhhhhHHHHHHHHHHHHhhccc
Confidence            3445567789999999888777777777777776 1111100 0    1123333333332211 011223555677776


Q ss_pred             cccc-ccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHH-HHh-cCcHHHHHHHhccCChhhHHHHHHH
Q 006494          473 MLDE-NRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSR-AIK-AGIIPSLLKLLEDKALGMVDEALSI  549 (643)
Q Consensus       473 ~~~~-~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~-iv~-~G~v~~Lv~lL~~~~~~~~~~Al~i  549 (643)
                      ..++ .|..|...-+++.+-.++-..++..+..++..+.||..++-.-.+ +++ ...++.....+..........++.+
T Consensus       571 s~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~a  650 (748)
T KOG4151|consen  571 SISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGAGA  650 (748)
T ss_pred             CcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhcccc
Confidence            5544 566677766666666667777888999999999999987765333 334 3445555555544444444555566


Q ss_pred             HHHHhCCh-hhHHHHHh-cCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHH
Q 006494          550 LQLLASHP-EGRNEIGR-LSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQR  627 (643)
Q Consensus       550 L~nLa~~~-~~~~~i~~-~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~  627 (643)
                      +..+.... ..+..+.+ ......++.++.++++.+|...+.+.+++.....+....+.....++.+..+-.-.-...++
T Consensus       651 ~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~~~a~~~~  730 (748)
T KOG4151|consen  651 LAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQKLNRAPKRE  730 (748)
T ss_pred             ccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHhhhhhhhh
Confidence            66444443 33332333 36778888999999999999988888887777667777776777777777665544444455


Q ss_pred             HHHHHHHH
Q 006494          628 KANSLLQH  635 (643)
Q Consensus       628 ~A~~lL~~  635 (643)
                      .|...|..
T Consensus       731 ~~~~~l~~  738 (748)
T KOG4151|consen  731 DAAPCLSA  738 (748)
T ss_pred             hhhhHHHH
Confidence            55555543

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=88.05  E-value=16  Score=39.44  Aligned_cols=224  Identities=14%  Similarity=0.154  Sum_probs=131.3

Q ss_pred             HHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhc--ccChhhHHH------H--HhcCChHHH
Q 006494          380 DSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNL--SLDETNKRH------I--AREGAIPAI  449 (643)
Q Consensus       380 ~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nL--s~~~~~k~~------i--~~~g~i~~L  449 (643)
                      .|+..|-.+....+..-..+.+.+++..++..+...-....+.  .-..+-  ...++.+..      +  ...+.++.|
T Consensus         3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK~l   80 (379)
T PF06025_consen    3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEE--NKNEEAGSGIPPEYKESSVDGYSISYQRQQLLKSL   80 (379)
T ss_pred             HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc--ccccCCCCCCCCCcccccccccccCHHHHHHHHHH
Confidence            3555666666555666667788999999999887631111110  000000  000111111      1  123344444


Q ss_pred             HHHHccCCHHHHHHHHHHHHHccc-cccc---cchhhc-cCChHHHHHHcccC---ChhhHHHHHHHHHHhhcCCCc-hH
Q 006494          450 IEILQNGTNEARENSAAALFSLSM-LDEN---RVMVGN-LNGIPPLVNLLRYG---SIRGKKDAATALFNLSINQSN-KS  520 (643)
Q Consensus       450 v~lL~~~~~~~~~~Aa~~L~~Ls~-~~~~---k~~i~~-~g~i~~Lv~lL~s~---~~~~k~~A~~aL~nLs~~~en-~~  520 (643)
                      ++++..               +.. ....   -..+.+ ...+..|..++++.   .+.+--.|+.++..+..+.+. -.
T Consensus        81 Lk~l~~---------------~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~  145 (379)
T PF06025_consen   81 LKFLSH---------------AMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFS  145 (379)
T ss_pred             HHHHHH---------------HhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhH
Confidence            444321               111 1111   112233 33445666666664   356677888888888876665 55


Q ss_pred             HHHhcCcHHHHHHHhc-c---CChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCCh----HHHHHHH---H
Q 006494          521 RAIKAGIIPSLLKLLE-D---KALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTP----KNKECAT---S  589 (643)
Q Consensus       521 ~iv~~G~v~~Lv~lL~-~---~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~----~~ke~A~---~  589 (643)
                      .+.++|.++.+++.+. .   ++.++....-.+|..||-+..|.+.+.+.+.++.+++++.+..-    ..++.|.   .
T Consensus       146 ~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~  225 (379)
T PF06025_consen  146 ILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGN  225 (379)
T ss_pred             HHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHH
Confidence            6677999999999998 4   45566667778899999999999999999999999999865221    1112222   3


Q ss_pred             HHHHhccCCHHHHHHHHHcCcHHHHHHHHhhC
Q 006494          590 VLLELGLNNSYFILAALQYGVYEHLVEITRCG  621 (643)
Q Consensus       590 ~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g  621 (643)
                      .+-.|.++.+.-+..+.+. ++..+.++..-|
T Consensus       226 ~~DEL~RH~p~Lk~~i~~~-ii~~l~~l~~~g  256 (379)
T PF06025_consen  226 SFDELMRHHPSLKPDIIDA-IIKILDRLVELG  256 (379)
T ss_pred             HHHHHHccCHHHHHHHHHH-HHHHHHHHHHHh
Confidence            5667888888766655542 444444444433

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.02  E-value=4.9  Score=49.24  Aligned_cols=270  Identities=15%  Similarity=0.103  Sum_probs=136.5

Q ss_pred             HHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHH-HhhCChHHHHHHhcCCCHHHHHHHHHHHHhcc--cChhhHH
Q 006494          362 EICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILI-ANNGGIRPLVQLLSYPDSKIQEHTVTALLNLS--LDETNKR  438 (643)
Q Consensus       362 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i-~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs--~~~~~k~  438 (643)
                      ....|...+.+.++..|..++-=|-.+.++-...+... ...........+|...|.-+|..|.+-|.-.=  .+...|.
T Consensus       819 ~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k~  898 (1702)
T KOG0915|consen  819 ILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLKK  898 (1702)
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhHH
Confidence            34455566678888888765432222222111111111 11223367888999888888888877654321  2334444


Q ss_pred             HHHhcCChHHHHHHHccCC-------HHHHHHHHHHHH------Hcccccccc---chhhccCChHHHHHHcccC-Chhh
Q 006494          439 HIAREGAIPAIIEILQNGT-------NEARENSAAALF------SLSMLDENR---VMVGNLNGIPPLVNLLRYG-SIRG  501 (643)
Q Consensus       439 ~i~~~g~i~~Lv~lL~~~~-------~~~~~~Aa~~L~------~Ls~~~~~k---~~i~~~g~i~~Lv~lL~s~-~~~~  501 (643)
                      .+++     .|++-|..|.       .++....-++|.      +++...+.+   ..++++..|-..+++.++. ....
T Consensus       899 ~LV~-----sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnS  973 (1702)
T KOG0915|consen  899 SLVD-----SLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNS  973 (1702)
T ss_pred             HHHH-----HHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhc
Confidence            4433     3333332221       111111222222      222222211   2334445556666666554 5566


Q ss_pred             HHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChh-hHHHHHhcCcHHHHHHHHhcCC
Q 006494          502 KKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPE-GRNEIGRLSFIETLVEIIKNGT  580 (643)
Q Consensus       502 k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~-~~~~i~~~g~i~~Lv~lL~~~s  580 (643)
                      |+-|+.-+..++.....+.+=.-...||.|.+.=.+++..++.....|=..|...+. ...... ..++.-|+.-+.+..
T Consensus       974 k~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~-neIl~eLL~~lt~ke 1052 (1702)
T KOG0915|consen  974 KKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYL-NEILDELLVNLTSKE 1052 (1702)
T ss_pred             ccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHH-HHHHHHHHHhccchh
Confidence            777776666666533221111123467777777777777777666665556665532 222222 245555555555555


Q ss_pred             hHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhh
Q 006494          581 PKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMS  637 (643)
Q Consensus       581 ~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~  637 (643)
                      =++||.++-+|..|-.+.+.....-.-...-..+++.+.+=.+-+|+.|..+.+.++
T Consensus      1053 wRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~ls 1109 (1702)
T KOG0915|consen 1053 WRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALS 1109 (1702)
T ss_pred             HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            678999999999998875532211111123344444444444555555555555544

>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]

Probab=87.96  E-value=0.36  Score=48.46  Aligned_cols=50  Identities=18%  Similarity=0.359  Sum_probs=38.3

Q ss_pred             cCccCc-ccccCCee----cCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCC
Q 006494          274 LCPVTL-EIMTDPVI----VATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLA  323 (643)
Q Consensus       274 ~Cpi~~-~~m~dPv~----~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~  323 (643)
                      .||+|. +....|-+    =+|||+.|-+|.-.-|..|...||.|+.+|....+.
T Consensus         2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nfr   56 (300)
T KOG3800|consen    2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNFR   56 (300)
T ss_pred             CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhcccc
Confidence            488874 34444432    289999999999999999999999999888754433

>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=87.78  E-value=0.33  Score=48.97  Aligned_cols=44  Identities=30%  Similarity=0.591  Sum_probs=37.6

Q ss_pred             CcccCccCcccccC---CeecCCcccccHHhHHHHHhcCC--CCCCCCC
Q 006494          271 HEFLCPVTLEIMTD---PVIVATGQTYERESIQRWLNSNH--KTCPKTG  314 (643)
Q Consensus       271 ~~f~Cpi~~~~m~d---Pv~~~~g~t~~r~~I~~w~~~~~--~~cP~~~  314 (643)
                      .-|.||+..+.-+|   ||.++|||..-..+..+.-++|.  +.||.|-
T Consensus       335 s~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP  383 (396)
T COG5109         335 SLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCP  383 (396)
T ss_pred             ceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence            34899999999886   99999999999999998888774  4599883

>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=86.63  E-value=0.45  Score=49.42  Aligned_cols=57  Identities=32%  Similarity=0.453  Sum_probs=48.9

Q ss_pred             cccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCchhhhH
Q 006494          272 EFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALR  329 (643)
Q Consensus       272 ~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr  329 (643)
                      ...|.+++--+.|||-+..|..|+-..|-.|+.. +.+=|.|++++...+|++-..-|
T Consensus        40 ~~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk-~g~nP~tG~kl~~~dLIkL~F~K   96 (518)
T KOG0883|consen   40 FNHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKK-HGTNPITGQKLDGKDLIKLKFHK   96 (518)
T ss_pred             hhhceeccccccCcccccCCcEEeeehhhHHHHH-cCCCCCCCCccccccceeeeecc
Confidence            3468899999999999999999999999999996 56789999999988888743333

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]

Probab=86.54  E-value=0.45  Score=40.02  Aligned_cols=27  Identities=22%  Similarity=0.637  Sum_probs=23.8

Q ss_pred             CCcccccHHhHHHHHhcCCCCCCCCCcc
Q 006494          289 ATGQTYERESIQRWLNSNHKTCPKTGQI  316 (643)
Q Consensus       289 ~~g~t~~r~~I~~w~~~~~~~cP~~~~~  316 (643)
                      .|.|.|.-.||.+|++. +..||.++++
T Consensus        80 ~CNHaFH~hCisrWlkt-r~vCPLdn~e  106 (114)
T KOG2930|consen   80 VCNHAFHFHCISRWLKT-RNVCPLDNKE  106 (114)
T ss_pred             ecchHHHHHHHHHHHhh-cCcCCCcCcc
Confidence            47899999999999997 5789998865

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.53  E-value=19  Score=41.89  Aligned_cols=212  Identities=14%  Similarity=0.101  Sum_probs=119.3

Q ss_pred             CCHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHH-
Q 006494          415 PDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNL-  493 (643)
Q Consensus       415 ~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~l-  493 (643)
                      +.+.++-.++..|..+...-.-+..+...+.+...+..|++.+.-+-.+|...+..|+..       .....+|-|... 
T Consensus       739 ~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~il~dL~e~Y  811 (982)
T KOG4653|consen  739 DQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPEDILPDLSEEY  811 (982)
T ss_pred             CcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchhhHHHHHHHH
Confidence            334556677777777765554555566778888888888887776666777766666532       122355666653 


Q ss_pred             cccC--C-hhhHHHHHHHHHHhhc-CCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhh--HHHHHhcC
Q 006494          494 LRYG--S-IRGKKDAATALFNLSI-NQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEG--RNEIGRLS  567 (643)
Q Consensus       494 L~s~--~-~~~k~~A~~aL~nLs~-~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~--~~~i~~~g  567 (643)
                      ....  . ++.+...-.++.++.. ..+-..+..+ -.+...+..+.+++......+++++++||.--.+  ...+  ..
T Consensus       812 ~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~--~e  888 (982)
T KOG4653|consen  812 LSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFF--HE  888 (982)
T ss_pred             HhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHH--HH
Confidence            2221  1 2222233355555543 2222222222 2334444445555556677888999998875321  2222  23


Q ss_pred             cHHHHHHHHhc-CChHHHHHHHHHHHHhccCCHHHHHHHHHc---CcHHHHHHHHhhC-CHHHHHHHHHHHHHh
Q 006494          568 FIETLVEIIKN-GTPKNKECATSVLLELGLNNSYFILAALQY---GVYEHLVEITRCG-TNRGQRKANSLLQHM  636 (643)
Q Consensus       568 ~i~~Lv~lL~~-~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~---g~i~~L~~ll~~g-~~~~k~~A~~lL~~l  636 (643)
                      ++..++.+.+. ++.-.|..|+.++..+-.+.+.....+...   .....+..+.... .+.+|-.|...|..+
T Consensus       889 v~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei  962 (982)
T KOG4653|consen  889 VLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEI  962 (982)
T ss_pred             HHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence            55556665554 678889999988888877666544444432   3344444445444 444566665555433

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=86.50  E-value=9.8  Score=45.74  Aligned_cols=227  Identities=13%  Similarity=0.180  Sum_probs=129.3

Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHHHHHhhh---h-ChhhHHHHHhhCChHHHHHHhcCCCH-HHHHHHHHHHHhccc---
Q 006494          361 EEICSLIQNLSSSQLNIKRDSVMKIRMLSK---E-NPDNRILIANNGGIRPLVQLLSYPDS-KIQEHTVTALLNLSL---  432 (643)
Q Consensus       361 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~---~-~~~~r~~i~~~g~i~~Lv~lL~~~~~-~~~~~a~~~L~nLs~---  432 (643)
                      -.+|.++.++..+..++|..|+..|..+..   . .+.+-..+.+. ..|.|-.++.+.+. .++..-+..|..|+.   
T Consensus       462 RVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eY-lfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~  540 (1431)
T KOG1240|consen  462 RVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEY-LFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAY  540 (1431)
T ss_pred             hhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhh-hhhhhHhhhccCccceehhhHHhhHHHHHHHHH
Confidence            467788888888889999999888765532   1 11222222222 45566666665322 222222222222211   


Q ss_pred             ---------------Ch-hhHH---------HHH-hcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhcc--
Q 006494          433 ---------------DE-TNKR---------HIA-REGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNL--  484 (643)
Q Consensus       433 ---------------~~-~~k~---------~i~-~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~--  484 (643)
                                     ++ ++..         .-. -.++=..+..+|.+..+-++..-...|.-|+      .-+|+.  
T Consensus       541 rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC------~FFGk~ks  614 (1431)
T KOG1240|consen  541 RFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLC------VFFGKEKS  614 (1431)
T ss_pred             HHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH------HHhhhccc
Confidence                           11 1100         000 0111122233444444444433333333333      223332  


Q ss_pred             -C-ChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHH
Q 006494          485 -N-GIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNE  562 (643)
Q Consensus       485 -g-~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~  562 (643)
                       + .++.|+.+|.+.+...+-.-...|..+|..-+  .+-++.+.+|.|.+-|.++.+.+...|+.+|..|+...-.++.
T Consensus       615 ND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG--~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~  692 (1431)
T KOG1240|consen  615 NDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVG--WRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKP  692 (1431)
T ss_pred             ccchHHHHHHHhcCccHHHHHHHHhhccceEEEEe--eeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchH
Confidence             2 46888889988877666554455555554322  2235678899999999999999999999999999987554443


Q ss_pred             HHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccC
Q 006494          563 IGRLSFIETLVEIIKNGTPKNKECATSVLLELGLN  597 (643)
Q Consensus       563 i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~  597 (643)
                      .+- +.+.....+|-..+..+|..++.++......
T Consensus       693 ~v~-~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~  726 (1431)
T KOG1240|consen  693 AVK-DILQDVLPLLCHPNLWIRRAVLGIIAAIARQ  726 (1431)
T ss_pred             HHH-HHHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence            332 3556666677778889999999998887664

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=86.39  E-value=40  Score=34.09  Aligned_cols=193  Identities=18%  Similarity=0.150  Sum_probs=106.6

Q ss_pred             CChHHHHHHhcCC--CHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccc---
Q 006494          403 GGIRPLVQLLSYP--DSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDEN---  477 (643)
Q Consensus       403 g~i~~Lv~lL~~~--~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~---  477 (643)
                      .+++.|+..|...  .+-++-.|..+|.++.          ....++.+-+..+.+..++++....++..+-..+..   
T Consensus        67 ~Av~~l~~vl~desq~pmvRhEAaealga~~----------~~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~  136 (289)
T KOG0567|consen   67 DAVPVLVEVLLDESQEPMVRHEAAEALGAIG----------DPESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKI  136 (289)
T ss_pred             hhhHHHHHHhcccccchHHHHHHHHHHHhhc----------chhhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccc
Confidence            4566666666543  3444556666665543          222334444444444455555555555555321111   


Q ss_pred             --cchhh--------ccCChHHHHHHcccCC-h-hhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCChhhHHH
Q 006494          478 --RVMVG--------NLNGIPPLVNLLRYGS-I-RGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDE  545 (643)
Q Consensus       478 --k~~i~--------~~g~i~~Lv~lL~s~~-~-~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~  545 (643)
                        .....        ..+.+..|-..|.+.+ + --+..|+..|.|+-.          ..+|..|++-+..++.-.+.+
T Consensus       137 ~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~----------EeaI~al~~~l~~~SalfrhE  206 (289)
T KOG0567|consen  137 ANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT----------EEAINALIDGLADDSALFRHE  206 (289)
T ss_pred             cccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc----------HHHHHHHHHhcccchHHHHHH
Confidence              00110        1123444444443332 1 223344444444321          124555666666566667777


Q ss_pred             HHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhc--CChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCH
Q 006494          546 ALSILQLLASHPEGRNEIGRLSFIETLVEIIKN--GTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTN  623 (643)
Q Consensus       546 Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~--~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~  623 (643)
                      +..++..|-+          .-+||.|.+.|..  ..+.+|-.|+.+|..++..           .++..|.+++.+..+
T Consensus       207 vAfVfGQl~s----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e-----------~~~~vL~e~~~D~~~  265 (289)
T KOG0567|consen  207 VAFVFGQLQS----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIADE-----------DCVEVLKEYLGDEER  265 (289)
T ss_pred             HHHHHhhccc----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH-----------HHHHHHHHHcCCcHH
Confidence            8777776544          3468888888865  5688999999999888762           356667777777777


Q ss_pred             HHHHHHHHHHHHh
Q 006494          624 RGQRKANSLLQHM  636 (643)
Q Consensus       624 ~~k~~A~~lL~~l  636 (643)
                      -+++-+...|..+
T Consensus       266 vv~esc~valdm~  278 (289)
T KOG0567|consen  266 VVRESCEVALDML  278 (289)
T ss_pred             HHHHHHHHHHHHH
Confidence            7777666666554

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=86.30  E-value=3.5  Score=40.21  Aligned_cols=99  Identities=15%  Similarity=0.062  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhcc-----CChhhHHHHHHHHHHHhCC--hhhHHHHHhcCcHHHHHH
Q 006494          502 KKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLED-----KALGMVDEALSILQLLASH--PEGRNEIGRLSFIETLVE  574 (643)
Q Consensus       502 k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~-----~~~~~~~~Al~iL~nLa~~--~~~~~~i~~~g~i~~Lv~  574 (643)
                      ..+|+..|..++++++.+..++++..--.|...|..     ..+-+.-.++++++.|..+  +.....+....++|.+++
T Consensus       117 vcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLr  196 (315)
T COG5209         117 VCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLR  196 (315)
T ss_pred             HHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHH
Confidence            457788888899999999999998766556666532     2334667799999999987  445666677899999999


Q ss_pred             HHhcCChHHHHHHHHHHHHhccCCHH
Q 006494          575 IIKNGTPKNKECATSVLLELGLNNSY  600 (643)
Q Consensus       575 lL~~~s~~~ke~A~~~L~~L~~~~~~  600 (643)
                      ++..||+-.|.-|+.++..+-..+.+
T Consensus       197 Ime~gSElSktvaifI~qkil~dDvG  222 (315)
T COG5209         197 IMELGSELSKTVAIFIFQKILGDDVG  222 (315)
T ss_pred             HHHhhhHHHHHHHHHHHHHHhccchh
Confidence            99999999999999998877766543

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=85.82  E-value=2.5  Score=41.82  Aligned_cols=82  Identities=22%  Similarity=0.244  Sum_probs=63.4

Q ss_pred             hhhHHHHHHHHHHhhcCCCchHHHHhcC-------cHHHHHHHhcc-CChhhHHHHHHHHHHHhCChhh--HHHHHhcCc
Q 006494          499 IRGKKDAATALFNLSINQSNKSRAIKAG-------IIPSLLKLLED-KALGMVDEALSILQLLASHPEG--RNEIGRLSF  568 (643)
Q Consensus       499 ~~~k~~A~~aL~nLs~~~en~~~iv~~G-------~v~~Lv~lL~~-~~~~~~~~Al~iL~nLa~~~~~--~~~i~~~g~  568 (643)
                      ...++.|+.+|..||..+.|...++..+       .+..|+++|.. ++....|-|+.+|.+|+...+.  +....+.++
T Consensus       138 lSPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~  217 (257)
T PF12031_consen  138 LSPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC  217 (257)
T ss_pred             CCHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence            4668999999999999999988877654       45556666654 5677899999999999998543  333345689


Q ss_pred             HHHHHHHHhcCC
Q 006494          569 IETLVEIIKNGT  580 (643)
Q Consensus       569 i~~Lv~lL~~~s  580 (643)
                      |..|+.++....
T Consensus       218 i~~Li~FiE~a~  229 (257)
T PF12031_consen  218 ISHLIAFIEDAE  229 (257)
T ss_pred             HHHHHHHHHHHH
Confidence            999999997644

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=85.79  E-value=0.52  Score=48.01  Aligned_cols=51  Identities=20%  Similarity=0.300  Sum_probs=37.3

Q ss_pred             cccCccCccccc--CCeec--CCcccccHHhHHHHHhcCCCCCCCCCcccCCCCC
Q 006494          272 EFLCPVTLEIMT--DPVIV--ATGQTYERESIQRWLNSNHKTCPKTGQILDHLSL  322 (643)
Q Consensus       272 ~f~Cpi~~~~m~--dPv~~--~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l  322 (643)
                      +-.||+|.+-|.  |--..  +||...||.|...--+.-+..||.||...+.+.+
T Consensus        14 ed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~denv   68 (480)
T COG5175          14 EDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDENV   68 (480)
T ss_pred             cccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccce
Confidence            334999999885  44444  5799989988665555446789999998876553

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=85.29  E-value=9  Score=45.50  Aligned_cols=155  Identities=15%  Similarity=0.057  Sum_probs=98.4

Q ss_pred             CChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhcc-CChhhHHHHHHHHHHHhCChhhHHHH
Q 006494          485 NGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLED-KALGMVDEALSILQLLASHPEGRNEI  563 (643)
Q Consensus       485 g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~-~~~~~~~~Al~iL~nLa~~~~~~~~i  563 (643)
                      +++..|+..+++.+..++-.|+.-+.-+...-+  ..++ ..++...++++.. .+......|+-+|+.|+...--....
T Consensus       341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~~La-d~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~  417 (1133)
T KOG1943|consen  341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--PELA-DQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSL  417 (1133)
T ss_pred             HHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--HHHH-HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHH
Confidence            577788888888899999999999999887554  3332 3467777776654 33455667888898888753222111


Q ss_pred             HhcCcHHHHHHHHh--------cCChHHHHHHHHHHHHhccCCHH-HHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHH
Q 006494          564 GRLSFIETLVEIIK--------NGTPKNKECATSVLLELGLNNSY-FILAALQYGVYEHLVEITRCGTNRGQRKANSLLQ  634 (643)
Q Consensus       564 ~~~g~i~~Lv~lL~--------~~s~~~ke~A~~~L~~L~~~~~~-~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~  634 (643)
                      . ..++|.++.-|.        +....+|+.|+.++|.+.+.... ...-+++.=.-..|...+.+..-..|+.|.+.+.
T Consensus       418 l-~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlq  496 (1133)
T KOG1943|consen  418 L-EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQ  496 (1133)
T ss_pred             H-HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHH
Confidence            1 135565555442        34568899999999999986433 2222222212222334455667788888877665


Q ss_pred             -HhhhccCCC
Q 006494          635 -HMSKREHIP  643 (643)
Q Consensus       635 -~l~~~~e~p  643 (643)
                       +++|+...|
T Consensus       497 E~VGR~~n~p  506 (1133)
T KOG1943|consen  497 ENVGRQGNFP  506 (1133)
T ss_pred             HHhccCCCCC
Confidence             666655554

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=85.01  E-value=2.2  Score=41.63  Aligned_cols=95  Identities=22%  Similarity=0.218  Sum_probs=74.7

Q ss_pred             hHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcC-----ChHHHHHHHHHHHHhccCCHHHHH-HHHHcCcHHHHH
Q 006494          542 MVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNG-----TPKNKECATSVLLELGLNNSYFIL-AALQYGVYEHLV  615 (643)
Q Consensus       542 ~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~-----s~~~ke~A~~~L~~L~~~~~~~~~-~~~~~g~i~~L~  615 (643)
                      -+-.|+.+|..++++|+.+..++++..--.|-.+|...     -+..|-.+++++..|..++..+.. ..+...++|.++
T Consensus       116 RvcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL  195 (315)
T COG5209         116 RVCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL  195 (315)
T ss_pred             HHHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence            35568999999999999999999876654555555432     245677899999999998766554 455688999999


Q ss_pred             HHHhhCCHHHHHHHHHHHHHh
Q 006494          616 EITRCGTNRGQRKANSLLQHM  636 (643)
Q Consensus       616 ~ll~~g~~~~k~~A~~lL~~l  636 (643)
                      +++..|++-.|--|..++..+
T Consensus       196 rIme~gSElSktvaifI~qki  216 (315)
T COG5209         196 RIMELGSELSKTVAIFIFQKI  216 (315)
T ss_pred             HHHHhhhHHHHHHHHHHHHHH
Confidence            999999999998888887654

>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]

Probab=84.91  E-value=0.78  Score=54.92  Aligned_cols=43  Identities=23%  Similarity=0.492  Sum_probs=38.4

Q ss_pred             CcccCccCccccc-CCeecCCcccccHHhHHHHHhcCCCCCCCCC
Q 006494          271 HEFLCPVTLEIMT-DPVIVATGQTYERESIQRWLNSNHKTCPKTG  314 (643)
Q Consensus       271 ~~f~Cpi~~~~m~-dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~  314 (643)
                      ..|.|+||+++|+ .--+.-|||.||..|+.-|+.. +..||.|.
T Consensus      1152 ~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~-~s~~~~~k 1195 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYA-SSRCPICK 1195 (1394)
T ss_pred             cccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHH-hccCcchh
Confidence            4568999999999 6667889999999999999997 68899997

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=84.81  E-value=7.8  Score=39.46  Aligned_cols=136  Identities=15%  Similarity=0.038  Sum_probs=90.7

Q ss_pred             CChhhHHHHHHHHHHhhcCCCchHHHHhcC--cHHHHHHHhccC----ChhhHHHHHHHHHHHhCCh-hhH-HHHHhcCc
Q 006494          497 GSIRGKKDAATALFNLSINQSNKSRAIKAG--IIPSLLKLLEDK----ALGMVDEALSILQLLASHP-EGR-NEIGRLSF  568 (643)
Q Consensus       497 ~~~~~k~~A~~aL~nLs~~~en~~~iv~~G--~v~~Lv~lL~~~----~~~~~~~Al~iL~nLa~~~-~~~-~~i~~~g~  568 (643)
                      ..+..+.-+++++.|+-.++..+..+.+..  .+-..+..+...    +..++..++.++.|++..- ..+ ..=.....
T Consensus       122 ~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~l  201 (268)
T PF08324_consen  122 SPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSEL  201 (268)
T ss_dssp             SSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHH
T ss_pred             CcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence            456778889999999999999988887643  333333333333    5667888888999998741 111 00011123


Q ss_pred             HHHHHHHHhc--CChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHh-hCCHHHHHHHHHH
Q 006494          569 IETLVEIIKN--GTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITR-CGTNRGQRKANSL  632 (643)
Q Consensus       569 i~~Lv~lL~~--~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~-~g~~~~k~~A~~l  632 (643)
                      +..+++.+..  .+++..-.++.+|.+|+..++.....+...|+...+..... ...+|.++.+..+
T Consensus       202 l~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~ei  268 (268)
T PF08324_consen  202 LSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVAAEI  268 (268)
T ss_dssp             HHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred             HHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHhccC
Confidence            5555553322  57888889999999999877766666555677777776664 4478999888764

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>PRK14707 hypothetical protein; Provisional

Probab=84.77  E-value=76  Score=41.08  Aligned_cols=275  Identities=13%  Similarity=0.045  Sum_probs=146.3

Q ss_pred             HHHHHHHHHhhcC-CCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHh-cccChhhH
Q 006494          360 IEEICSLIQNLSS-SQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLN-LSLDETNK  437 (643)
Q Consensus       360 ~~~i~~Lv~~L~s-~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~n-Ls~~~~~k  437 (643)
                      ...|..+++-++. .+......|+..|.....+....+..+-..|....|=.+.+-++.....+++..|.. |+.+..-+
T Consensus       204 ~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~~~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~  283 (2710)
T PRK14707        204 AQGVATVLNALCKWPDTPDCGNAVSALAERLADESRLRNELKPQELGNALNALSKWADTPVCAAAASALAERLVDDPGLR  283 (2710)
T ss_pred             hHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHHhCChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHH
Confidence            3455555655542 233334455555554332334444444334444444445566777777777777654 33333333


Q ss_pred             HHHHhcCChHHHHHHHcc-CCHHHHHHHHH-HHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHH-Hhhc
Q 006494          438 RHIAREGAIPAIIEILQN-GTNEARENSAA-ALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALF-NLSI  514 (643)
Q Consensus       438 ~~i~~~g~i~~Lv~lL~~-~~~~~~~~Aa~-~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~-nLs~  514 (643)
                      ..+ +...+.-.+.-|+. .+..+...|+. +-..|..+.+.+..+-..+.-..|-.+-+=.+......|+.+|. -|+.
T Consensus       284 ~al-~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~  362 (2710)
T PRK14707        284 KAL-DPINVTQALNALSKWADLPVCAEAAIALAERLADDPELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERLVA  362 (2710)
T ss_pred             Hhc-CHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhcc
Confidence            333 33344445555554 34444444444 44446554444443333332233333323345556666666666 4666


Q ss_pred             CCCchHHHHhcCcHHHHHHHhcc-CCh-hhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhc-CChHHHHHHHHHH
Q 006494          515 NQSNKSRAIKAGIIPSLLKLLED-KAL-GMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKN-GTPKNKECATSVL  591 (643)
Q Consensus       515 ~~en~~~iv~~G~v~~Lv~lL~~-~~~-~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~-~s~~~ke~A~~~L  591 (643)
                      +++-+..+- ..++..+++-|.. ++. .+...|...-..|+.+++-++.+-. ..|...+.-|.. .+..++..|+..|
T Consensus       363 d~~l~~~l~-~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~-Q~van~lnalsKWPd~~~C~~aa~~l  440 (2710)
T PRK14707        363 DPELRKDLE-PQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDP-QGVSNALNALAKWPDLPICGQAVSAL  440 (2710)
T ss_pred             CHhhhcccc-hhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcch-hhHHHHHHHhhcCCcchhHHHHHHHH
Confidence            666565554 4456666677765 443 4444555555577777888877744 455555555554 4556777778888


Q ss_pred             HHhccCCHHHHHHHHHcCcHHHHHHHHhhC-CHHHHHHHHHHHHHhh
Q 006494          592 LELGLNNSYFILAALQYGVYEHLVEITRCG-TNRGQRKANSLLQHMS  637 (643)
Q Consensus       592 ~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g-~~~~k~~A~~lL~~l~  637 (643)
                      ..-..++.+.++.+--.++...|-.++.=. ++-.+..|..+...|.
T Consensus       441 A~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c~~aa~~La~~l~  487 (2710)
T PRK14707        441 AGRLAHDTELCKALDPINVTQALDALSKWPDTPICGQTASALAARLA  487 (2710)
T ss_pred             HHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhHHHHHHHHHHHhc
Confidence            776677777666554455555555555544 3444455555555554

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=84.72  E-value=55  Score=34.54  Aligned_cols=160  Identities=14%  Similarity=0.105  Sum_probs=111.1

Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHHHHHhhh-hChhhHHHHHh-hC-ChHHHHHHhcCC-----C--------HHHHHHHH
Q 006494          361 EEICSLIQNLSSSQLNIKRDSVMKIRMLSK-ENPDNRILIAN-NG-GIRPLVQLLSYP-----D--------SKIQEHTV  424 (643)
Q Consensus       361 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~-~~~~~r~~i~~-~g-~i~~Lv~lL~~~-----~--------~~~~~~a~  424 (643)
                      ..++.+-+.|++........+++-|..+.. .+......+.. -+ -.+.+.+++...     +        +.++...+
T Consensus        56 ~~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI  135 (330)
T PF11707_consen   56 NHLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFI  135 (330)
T ss_pred             HHHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHH
Confidence            347778888888888888888888888886 44444444433 23 345667776432     1        27788888


Q ss_pred             HHHHhcc--cChhhHHHHH-hcCChHHHHHHHccCCHHHHHHHHHHHHH-ccccc----cccchhhccCChHHHHHHccc
Q 006494          425 TALLNLS--LDETNKRHIA-REGAIPAIIEILQNGTNEARENSAAALFS-LSMLD----ENRVMVGNLNGIPPLVNLLRY  496 (643)
Q Consensus       425 ~~L~nLs--~~~~~k~~i~-~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~-Ls~~~----~~k~~i~~~g~i~~Lv~lL~s  496 (643)
                      ..+..+.  .++..+..+. ..+.+..+.+-|...+.++......+|.. +..+.    ..|..+....++..|+.+...
T Consensus       136 ~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~  215 (330)
T PF11707_consen  136 RFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSR  215 (330)
T ss_pred             HHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcc
Confidence            7666654  3556777776 56678888888888888888878887775 33222    246666667788999998776


Q ss_pred             CCh----hhHHHHHHHHHHhhcCCCchH
Q 006494          497 GSI----RGKKDAATALFNLSINQSNKS  520 (643)
Q Consensus       497 ~~~----~~k~~A~~aL~nLs~~~en~~  520 (643)
                      .+.    .+...+-..|..+|.++.+-.
T Consensus       216 ~~~~~~~~~~~~vh~fL~~lcT~p~~Gv  243 (330)
T PF11707_consen  216 DGEDEKSSVADLVHEFLLALCTDPKHGV  243 (330)
T ss_pred             cCCcccchHHHHHHHHHHHHhcCCCccc
Confidence            655    777888888999998776533

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=84.44  E-value=1.6  Score=28.48  Aligned_cols=29  Identities=14%  Similarity=0.389  Sum_probs=25.3

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHhccC
Q 006494          569 IETLVEIIKNGTPKNKECATSVLLELGLN  597 (643)
Q Consensus       569 i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~  597 (643)
                      +|.+++++.+.++++|..|+.+|..++.+
T Consensus         2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    2 LPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            68899999999999999999999988753

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=84.23  E-value=39  Score=38.13  Aligned_cols=133  Identities=18%  Similarity=0.208  Sum_probs=80.8

Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccCh-hhHH
Q 006494          360 IEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDE-TNKR  438 (643)
Q Consensus       360 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~-~~k~  438 (643)
                      ......++..-+ ++..+..-|+.-|....++.|+....     ++..++.++...|..++..|+..|-.++.+. +...
T Consensus        22 ~~~y~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~   95 (556)
T PF05918_consen   22 EEDYKEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVS   95 (556)
T ss_dssp             HHHHHHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HH
T ss_pred             HHHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHh
Confidence            345666666555 46777788888888888888876655     4567999999999999999999999998763 3444


Q ss_pred             HHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcc---cCChhhHHHHHHHHH
Q 006494          439 HIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLR---YGSIRGKKDAATALF  510 (643)
Q Consensus       439 ~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~---s~~~~~k~~A~~aL~  510 (643)
                      .+     ...|+.+|.+.+......+-.+|..|-..+.       .+.+..|.+.+.   +++..++..++..|.
T Consensus        96 kv-----aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~-------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~  158 (556)
T PF05918_consen   96 KV-----ADVLVQLLQTDDPVELDAVKNSLMSLLKQDP-------KGTLTGLFSQIESSKSGDEQVRERALKFLR  158 (556)
T ss_dssp             HH-----HHHHHHHTT---HHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred             HH-----HHHHHHHHhcccHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence            33     4567888887765544444444444422111       234555555554   566677777776654

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=83.69  E-value=1.4  Score=47.46  Aligned_cols=176  Identities=16%  Similarity=0.065  Sum_probs=107.9

Q ss_pred             HHHHHHHHHhcccChhhHHHHH-hcCChHHHHHHHccCCHHHHHHHHHHHHHccc--ccc--c----cchhhccC-ChHH
Q 006494          420 QEHTVTALLNLSLDETNKRHIA-REGAIPAIIEILQNGTNEARENSAAALFSLSM--LDE--N----RVMVGNLN-GIPP  489 (643)
Q Consensus       420 ~~~a~~~L~nLs~~~~~k~~i~-~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~--~~~--~----k~~i~~~g-~i~~  489 (643)
                      ...|++++.-+..++..+.... -.++...++..|.+.....|+.+++++.+++.  .+.  +    ...+  .| -+..
T Consensus       408 ~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~--sg~ll~~  485 (728)
T KOG4535|consen  408 KAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERF--SGLLLLK  485 (728)
T ss_pred             HHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHH--HHHHHHH
Confidence            3445555555556666554333 45567777777777777889999999999862  111  1    1111  11 1223


Q ss_pred             HHHHc---ccCChhhHHHHHHHHHHhhcCCC----chHHHHhcCcHHHHHHHhc-cCChhhHHHHHHHHHHHhCChhhHH
Q 006494          490 LVNLL---RYGSIRGKKDAATALFNLSINQS----NKSRAIKAGIIPSLLKLLE-DKALGMVDEALSILQLLASHPEGRN  561 (643)
Q Consensus       490 Lv~lL---~s~~~~~k~~A~~aL~nLs~~~e----n~~~iv~~G~v~~Lv~lL~-~~~~~~~~~Al~iL~nLa~~~~~~~  561 (643)
                      ++...   ...+.+++.+|..+|.|+...-+    -.-..+..|.+..++.... ...-.++..|+.++.||-.++...-
T Consensus       486 ~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~l  565 (728)
T KOG4535|consen  486 MLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPL  565 (728)
T ss_pred             HHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccc
Confidence            33222   23467889999999999975211    1222233455555544432 3566789999999999999875421


Q ss_pred             HH--HhcCcHHHHHHHHhc-CChHHHHHHHHHHHHhccC
Q 006494          562 EI--GRLSFIETLVEIIKN-GTPKNKECATSVLLELGLN  597 (643)
Q Consensus       562 ~i--~~~g~i~~Lv~lL~~-~s~~~ke~A~~~L~~L~~~  597 (643)
                      .-  ....+.+.|..++.+ .+=.+|.+|+++|..-...
T Consensus       566 q~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~r  604 (728)
T KOG4535|consen  566 QTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKR  604 (728)
T ss_pred             cCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCc
Confidence            11  222457888888876 4457788888888776654

>PRK14707 hypothetical protein; Provisional

Probab=83.63  E-value=64  Score=41.69  Aligned_cols=251  Identities=18%  Similarity=0.158  Sum_probs=139.7

Q ss_pred             HHHHHHHHhhhhChhhHHHHHhhCChHHHHH-HhcCCCHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHHHHcc-CC
Q 006494          380 DSVMKIRMLSKENPDNRILIANNGGIRPLVQ-LLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQN-GT  457 (643)
Q Consensus       380 ~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~-lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~-~~  457 (643)
                      .++..|.......+..+..+ ...+|..++. +-+-++.....+++..|.....++.....-++...+...+.-|.. .+
T Consensus       183 ~aa~~la~~~~~~d~~~~~~-~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~~~~~q~va~~lN~lsKwp~  261 (2710)
T PRK14707        183 AVAPRFAALVASDDRLRSAM-DAQGVATVLNALCKWPDTPDCGNAVSALAERLADESRLRNELKPQELGNALNALSKWAD  261 (2710)
T ss_pred             HHHHHHHHHhcCChhhhccc-chHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHHhCChHHHHHHHHHHhcCCC
Confidence            34444433332334444444 3334444444 444456566667777666544444444444466667777777765 34


Q ss_pred             HHHHHHHHHHHHH-ccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHH-hhcCCCchHHHHhcCcHHHHHHHh
Q 006494          458 NEARENSAAALFS-LSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFN-LSINQSNKSRAIKAGIIPSLLKLL  535 (643)
Q Consensus       458 ~~~~~~Aa~~L~~-Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~n-Ls~~~en~~~iv~~G~v~~Lv~lL  535 (643)
                      ..+..+++..|.. |+.....+..+...+.-..|-.+-+=.+..+...|+..|.. |...++-+ .-++.-.+..+++-|
T Consensus       262 ~~~C~~a~~~lA~rl~~~~~l~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~-~~~~~~~~~~~LNal  340 (2710)
T PRK14707        262 TPVCAAAASALAERLVDDPGLRKALDPINVTQALNALSKWADLPVCAEAAIALAERLADDPELC-KALNARGLSTALNAL  340 (2710)
T ss_pred             chHHHHHHHHHHHHHhhhHHHHHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhh-hccchHHHHHHHHHh
Confidence            5556666666553 44444445444443333333333344466677777666654 55444444 334445566667777


Q ss_pred             cc--CChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhc-CChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHH
Q 006494          536 ED--KALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKN-GTPKNKECATSVLLELGLNNSYFILAALQYGVYE  612 (643)
Q Consensus       536 ~~--~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~-~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~  612 (643)
                      +.  ++..+.+.|.++-..|+.+++-+..+- ..++..++.-|.. .....+..|+..|..=...+++....+-..|+-.
T Consensus       341 sKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~-~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van  419 (2710)
T PRK14707        341 SKWPDNPVCAAAVSALAERLVADPELRKDLE-PQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVSN  419 (2710)
T ss_pred             hcCCCchhHHHHHHHHHHHhccCHhhhcccc-hhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhHHH
Confidence            65  344556666677778888888887774 3455666666655 3345566667777665556666666555566666


Q ss_pred             HHHHHHhhCCHHHHHHHHHHH
Q 006494          613 HLVEITRCGTNRGQRKANSLL  633 (643)
Q Consensus       613 ~L~~ll~~g~~~~k~~A~~lL  633 (643)
                      .|-.+..=....+.+.|+..|
T Consensus       420 ~lnalsKWPd~~~C~~aa~~l  440 (2710)
T PRK14707        420 ALNALAKWPDLPICGQAVSAL  440 (2710)
T ss_pred             HHHHhhcCCcchhHHHHHHHH
Confidence            666666655555555554443

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.50  E-value=65  Score=37.27  Aligned_cols=104  Identities=20%  Similarity=0.198  Sum_probs=52.9

Q ss_pred             CChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccC-ChhhHHHHHHHHHHhhcCCCchHHH
Q 006494          444 GAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYG-SIRGKKDAATALFNLSINQSNKSRA  522 (643)
Q Consensus       444 g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~-~~~~k~~A~~aL~nLs~~~en~~~i  522 (643)
                      .+|..+..+|.+.+..++..||++|..|+.++..-.     .+...+++++... +-.+|.-.+.-|..|.   .+...+
T Consensus       243 ~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk-----~Aa~~~i~l~~kesdnnvklIvldrl~~l~---~~~~~i  314 (948)
T KOG1058|consen  243 RYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALK-----AAASTYIDLLVKESDNNVKLIVLDRLSELK---ALHEKI  314 (948)
T ss_pred             HHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHH-----HHHHHHHHHHHhccCcchhhhhHHHHHHHh---hhhHHH
Confidence            355666666666666666666666666654332110     1223444444222 2223333333333332   111111


Q ss_pred             HhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC
Q 006494          523 IKAGIIPSLLKLLEDKALGMVDEALSILQLLASH  556 (643)
Q Consensus       523 v~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~  556 (643)
                      . .|.+--++++|.+++-++...++.+..-|+++
T Consensus       315 l-~~l~mDvLrvLss~dldvr~Ktldi~ldLvss  347 (948)
T KOG1058|consen  315 L-QGLIMDVLRVLSSPDLDVRSKTLDIALDLVSS  347 (948)
T ss_pred             H-HHHHHHHHHHcCcccccHHHHHHHHHHhhhhh
Confidence            1 34455566777777778888888887777775

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=83.48  E-value=0.69  Score=47.99  Aligned_cols=46  Identities=15%  Similarity=0.231  Sum_probs=38.5

Q ss_pred             cccCccCcccccCCeecCCccc-ccHHhHHHHHhcCCCCCCCCCcccC
Q 006494          272 EFLCPVTLEIMTDPVIVATGQT-YERESIQRWLNSNHKTCPKTGQILD  318 (643)
Q Consensus       272 ~f~Cpi~~~~m~dPv~~~~g~t-~~r~~I~~w~~~~~~~cP~~~~~l~  318 (643)
                      .-.|=||+.=-+|-+++||-|. .|..|-+... -.+..||+||+++.
T Consensus       290 gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr-~q~n~CPICRqpi~  336 (349)
T KOG4265|consen  290 GKECVICLSESRDTVVLPCRHLCLCSGCAKSLR-YQTNNCPICRQPIE  336 (349)
T ss_pred             CCeeEEEecCCcceEEecchhhehhHhHHHHHH-HhhcCCCccccchH
Confidence            4579999999999999999997 8888865544 44678999999875

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=83.37  E-value=6.9  Score=46.86  Aligned_cols=139  Identities=24%  Similarity=0.210  Sum_probs=103.4

Q ss_pred             ChHHHHHHhc----CCCHHHHHHHHHHHHhcc-cChhhHHHHHhcCChHHHHHHHc-cCCHHHHHHHHHHHHHccccccc
Q 006494          404 GIRPLVQLLS----YPDSKIQEHTVTALLNLS-LDETNKRHIAREGAIPAIIEILQ-NGTNEARENSAAALFSLSMLDEN  477 (643)
Q Consensus       404 ~i~~Lv~lL~----~~~~~~~~~a~~~L~nLs-~~~~~k~~i~~~g~i~~Lv~lL~-~~~~~~~~~Aa~~L~~Ls~~~~~  477 (643)
                      ..|.++..++    .+++++|..|.-+|..+- .+.....     ..++.++.+|. ++++.+|.|++.++..|+..-.+
T Consensus       920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~fpn  994 (1251)
T KOG0414|consen  920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN  994 (1251)
T ss_pred             HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence            4566777774    358999999988888764 2322222     35788999997 67899999999999999864443


Q ss_pred             cchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHHHh-cCcHHHHHHHhccCChhhHHHHHHHHHHHhCC
Q 006494          478 RVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIK-AGIIPSLLKLLEDKALGMVDEALSILQLLASH  556 (643)
Q Consensus       478 k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~-~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~  556 (643)
                      -   .+ ..-+.|...|++.++.+++.|..+|.+|-.+.     |+. .|.++.+..+|.++++++.+.|=.....|+..
T Consensus       995 l---ie-~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd-----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k 1065 (1251)
T KOG0414|consen  995 L---IE-PWTEHLYRRLRDESPSVRKTALLVLSHLILND-----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSK 1065 (1251)
T ss_pred             c---cc-hhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh-----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhc
Confidence            1   11 12366778888999999999999999997654     333 68999999999999998888887666666654

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=83.15  E-value=0.66  Score=34.62  Aligned_cols=47  Identities=15%  Similarity=0.194  Sum_probs=34.6

Q ss_pred             cccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCC
Q 006494          272 EFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLS  321 (643)
Q Consensus       272 ~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~  321 (643)
                      +..|=.+...-+..++.+|||..++.|..-   +.-.-||+|+.++...+
T Consensus         7 ~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~---~rYngCPfC~~~~~~~~   53 (55)
T PF14447_consen    7 EQPCVFCGFVGTKGTVLPCGHLICDNCFPG---ERYNGCPFCGTPFEFDD   53 (55)
T ss_pred             ceeEEEccccccccccccccceeeccccCh---hhccCCCCCCCcccCCC
Confidence            344556777778899999999999998433   22346999999987543

>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]

Probab=83.14  E-value=0.75  Score=44.63  Aligned_cols=54  Identities=20%  Similarity=0.296  Sum_probs=41.1

Q ss_pred             cccCccCcccccCCee-cCCcccccHHhHHHHHhcC-CCCCCC--CCcccCCCCCCch
Q 006494          272 EFLCPVTLEIMTDPVI-VATGQTYERESIQRWLNSN-HKTCPK--TGQILDHLSLAPN  325 (643)
Q Consensus       272 ~f~Cpi~~~~m~dPv~-~~~g~t~~r~~I~~w~~~~-~~~cP~--~~~~l~~~~l~pn  325 (643)
                      +.+|||+..-.--|.+ ..|.|-|++..|.+.++.. ...||.  |-+.+.-..+.-+
T Consensus       189 ~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v~d  246 (275)
T COG5627         189 SNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYVCD  246 (275)
T ss_pred             cccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchhhh
Confidence            4799999999999987 4799999999999999842 355887  6555554444433

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=82.95  E-value=13  Score=37.74  Aligned_cols=155  Identities=16%  Similarity=0.132  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHHHhhhhChhhHHHHHhhC--ChHHHHHHhcC----CCHHHHHHHHHHHHhcccChhhHHHHHhc-C-ChH
Q 006494          376 NIKRDSVMKIRMLSKENPDNRILIANNG--GIRPLVQLLSY----PDSKIQEHTVTALLNLSLDETNKRHIARE-G-AIP  447 (643)
Q Consensus       376 ~~~~~Al~~L~~La~~~~~~r~~i~~~g--~i~~Lv~lL~~----~~~~~~~~a~~~L~nLs~~~~~k~~i~~~-g-~i~  447 (643)
                      +.+.-++..+|.+.. ++..-..+...+  ....+..++..    .....+--+++++.|+..++..+..+... + .+-
T Consensus        78 ~~~fP~lDLlRl~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~  156 (268)
T PF08324_consen   78 ESRFPALDLLRLAAL-HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSIL  156 (268)
T ss_dssp             CC-HHHHHHHHHHCC-CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHH
T ss_pred             ccchhHHhHHHHHHh-CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHH
Confidence            446677777777764 444444444332  24455555433    35667788999999999999998888743 2 333


Q ss_pred             HHHHHHccC----CHHHHHHHHHHHHHccccccccch--hhccCChHHHHHHccc--CChhhHHHHHHHHHHhhcCCCch
Q 006494          448 AIIEILQNG----TNEARENSAAALFSLSMLDENRVM--VGNLNGIPPLVNLLRY--GSIRGKKDAATALFNLSINQSNK  519 (643)
Q Consensus       448 ~Lv~lL~~~----~~~~~~~Aa~~L~~Ls~~~~~k~~--i~~~g~i~~Lv~lL~s--~~~~~k~~A~~aL~nLs~~~en~  519 (643)
                      ..+..+...    +..++..++.+++|++..-.....  =.....+..++..+..  .++++...++.||.+|...++..
T Consensus       157 ~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~  236 (268)
T PF08324_consen  157 ELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSA  236 (268)
T ss_dssp             HHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHH
T ss_pred             HHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhH
Confidence            333333333    567888899999999843221111  1112245566664432  48899999999999999777666


Q ss_pred             HHHHh-cCcHHHH
Q 006494          520 SRAIK-AGIIPSL  531 (643)
Q Consensus       520 ~~iv~-~G~v~~L  531 (643)
                      ..... .|+-..+
T Consensus       237 ~~~~~~l~~~~~~  249 (268)
T PF08324_consen  237 KQLAKSLDVKSVL  249 (268)
T ss_dssp             HHHCCCCTHHHHH
T ss_pred             HHHHHHcChHHHH
Confidence            66655 3444333

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=82.79  E-value=18  Score=39.49  Aligned_cols=186  Identities=19%  Similarity=0.200  Sum_probs=107.9

Q ss_pred             HHHHHHHhhc-CCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHh-cCCCHHHHHHHHHHHHhcccChhhHHH
Q 006494          362 EICSLIQNLS-SSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLL-SYPDSKIQEHTVTALLNLSLDETNKRH  439 (643)
Q Consensus       362 ~i~~Lv~~L~-s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL-~~~~~~~~~~a~~~L~nLs~~~~~k~~  439 (643)
                      .+..++.... ..++..+..+++.+..+.-.-+..- .+  ...+..+...+ ...+...+..++.++..++     |..
T Consensus       190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~-~l--~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~-----KaL  261 (415)
T PF12460_consen  190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD-DL--DEFLDSLLQSISSSEDSELRPQALEILIWIT-----KAL  261 (415)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh-hH--HHHHHHHHhhhcccCCcchhHHHHHHHHHHH-----HHH
Confidence            4455555443 3345666667776666652211100 00  01222333333 2334445555555554432     333


Q ss_pred             HHh-----cCChHHHHHHHccCCHHHHHHHHHHHHHcccc-ccc--------cchhhcc----CChHHHHHHcccCChhh
Q 006494          440 IAR-----EGAIPAIIEILQNGTNEARENSAAALFSLSML-DEN--------RVMVGNL----NGIPPLVNLLRYGSIRG  501 (643)
Q Consensus       440 i~~-----~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~-~~~--------k~~i~~~----g~i~~Lv~lL~s~~~~~  501 (643)
                      ++.     ...+..++.+|.+  ++....+|..+.-|..+ ++.        -..+...    ..+|.|++-.++.+...
T Consensus       262 v~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~  339 (415)
T PF12460_consen  262 VMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEI  339 (415)
T ss_pred             HHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhh
Confidence            331     1235556666655  45566677777776554 221        1122222    35677777777766668


Q ss_pred             HHHHHHHHHHhhcCCCchHHHHh-cCcHHHHHHHhccCChhhHHHHHHHHHHHhCCh
Q 006494          502 KKDAATALFNLSINQSNKSRAIK-AGIIPSLLKLLEDKALGMVDEALSILQLLASHP  557 (643)
Q Consensus       502 k~~A~~aL~nLs~~~en~~~iv~-~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~  557 (643)
                      |.+-+.||.++..+-+...-+-+ ...+|.|++-|..++..+...++.+|..+....
T Consensus       340 k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~  396 (415)
T PF12460_consen  340 KSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA  396 (415)
T ss_pred             HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence            88889999999886665444444 568888999998788889999999999888864

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=82.39  E-value=2.6  Score=27.42  Aligned_cols=28  Identities=11%  Similarity=0.223  Sum_probs=24.6

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhh
Q 006494          363 ICSLIQNLSSSQLNIKRDSVMKIRMLSK  390 (643)
Q Consensus       363 i~~Lv~~L~s~~~~~~~~Al~~L~~La~  390 (643)
                      +|.+++.+++.++++|..|+..|..+++
T Consensus         2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    2 LPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            6789999999999999999999998875

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=82.29  E-value=9.1  Score=30.72  Aligned_cols=57  Identities=19%  Similarity=0.211  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhc-CChHHHHHHHHHHHHhccCCH
Q 006494          543 VDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKN-GTPKNKECATSVLLELGLNNS  599 (643)
Q Consensus       543 ~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~-~s~~~ke~A~~~L~~L~~~~~  599 (643)
                      ...|++++.++++.+.|...+-+.++++.++++..+ .....|--|..+|..+++...
T Consensus         4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~   61 (73)
T PF14668_consen    4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEE   61 (73)
T ss_pred             HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHH
Confidence            467999999999999999988888999999999876 457889999999988887543

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=82.23  E-value=0.91  Score=47.29  Aligned_cols=49  Identities=14%  Similarity=0.397  Sum_probs=33.9

Q ss_pred             CcccCccCcccccCC---e-ecCCcccccHHhHHHHHhcC--CCCCCCCCcccCC
Q 006494          271 HEFLCPVTLEIMTDP---V-IVATGQTYERESIQRWLNSN--HKTCPKTGQILDH  319 (643)
Q Consensus       271 ~~f~Cpi~~~~m~dP---v-~~~~g~t~~r~~I~~w~~~~--~~~cP~~~~~l~~  319 (643)
                      -.-.|.||-+..-.-   - |-.|||+|.--|+.+||..-  +++||.|+-.+..
T Consensus         3 i~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~   57 (465)
T KOG0827|consen    3 IMAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQE   57 (465)
T ss_pred             ccceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccc
Confidence            345688885443211   1 23599999999999999843  3579999955553

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=81.48  E-value=24  Score=41.63  Aligned_cols=184  Identities=15%  Similarity=0.098  Sum_probs=112.1

Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHc-ccCChhhHHHHHHHHHHhhcCCCchHHHHhcC
Q 006494          448 AIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLL-RYGSIRGKKDAATALFNLSINQSNKSRAIKAG  526 (643)
Q Consensus       448 ~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL-~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G  526 (643)
                      .+-.-+.+.++.-|..|+.-+.............+..|-+-.++... .+.+..+...|+..|..++..-..-..=...+
T Consensus       257 ~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~  336 (815)
T KOG1820|consen  257 NLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKN  336 (815)
T ss_pred             HHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHh
Confidence            33333445556556555555544332222111112234445555544 34477788888888888886322223333457


Q ss_pred             cHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCH-HHHHHH
Q 006494          527 IIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNS-YFILAA  605 (643)
Q Consensus       527 ~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~-~~~~~~  605 (643)
                      +.+.++.-+.+....+.+.++.++-..+..      ..-....+.+..++++++|..+......+.......+ .....-
T Consensus       337 v~p~lld~lkekk~~l~d~l~~~~d~~~ns------~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~  410 (815)
T KOG1820|consen  337 VFPSLLDRLKEKKSELRDALLKALDAILNS------TPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKE  410 (815)
T ss_pred             hcchHHHHhhhccHHHHHHHHHHHHHHHhc------ccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchh
Confidence            888999999887778888888777665551      1112456778888999999999887776665544333 211111


Q ss_pred             HHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhh
Q 006494          606 LQYGVYEHLVEITRCGTNRGQRKANSLLQHMS  637 (643)
Q Consensus       606 ~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~  637 (643)
                      .-.+++|.++....+.+..+|..|.+.+-.+-
T Consensus       411 t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~  442 (815)
T KOG1820|consen  411 TVKTLVPHLIKHINDTDKDVRKAALEAVAAVM  442 (815)
T ss_pred             hHHHHhHHHhhhccCCcHHHHHHHHHHHHHHH
Confidence            11357888888888888888988887765443

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=80.91  E-value=66  Score=33.34  Aligned_cols=214  Identities=17%  Similarity=0.165  Sum_probs=140.1

Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHh-----hCChHHHHHHhcCCC-HHHHHHHHHHHHhcccC
Q 006494          360 IEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIAN-----NGGIRPLVQLLSYPD-SKIQEHTVTALLNLSLD  433 (643)
Q Consensus       360 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~-----~g~i~~Lv~lL~~~~-~~~~~~a~~~L~nLs~~  433 (643)
                      .+.+..|++.+...+.+.+..++....++-+..-..|...++     ...+..|+.-  ..+ +++..++-..|..-..+
T Consensus        78 ~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~--~~~~~~iaL~cg~mlrEcirh  155 (342)
T KOG1566|consen   78 ADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKG--YENTPEIALTCGNMLRECIRH  155 (342)
T ss_pred             CCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhh--hccchHHHHHHHHHHHHHHhh
Confidence            346677888888777777777777777776665555555443     1223333332  122 44444444445444455


Q ss_pred             hhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHcccccc-ccchhhcc---CCh-HHHHHHcccCChhhHHHHHHH
Q 006494          434 ETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDE-NRVMVGNL---NGI-PPLVNLLRYGSIRGKKDAATA  508 (643)
Q Consensus       434 ~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~-~k~~i~~~---g~i-~~Lv~lL~s~~~~~k~~A~~a  508 (643)
                      +.....|..+..+......++.++-++..-|.++...+..... ....+...   ..+ +.--.++.+++.-.++.+..+
T Consensus       156 e~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kl  235 (342)
T KOG1566|consen  156 EFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLKL  235 (342)
T ss_pred             HHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHHh
Confidence            6666666677778888888888877777777777777643222 22222221   122 336677899999999999999


Q ss_pred             HHHhhcCCCchHHHHh----cCcHHHHHHHhccCChhhHHHHHHHHHHHhCChh----hHHHHHhcCcHHHHHHHHh
Q 006494          509 LFNLSINQSNKSRAIK----AGIIPSLLKLLEDKALGMVDEALSILQLLASHPE----GRNEIGRLSFIETLVEIIK  577 (643)
Q Consensus       509 L~nLs~~~en~~~iv~----~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~----~~~~i~~~g~i~~Lv~lL~  577 (643)
                      |..+.....|...|..    ...+..+..+|.++....+-+|..+-+....++.    .+..+++.  =+.|++++.
T Consensus       236 lg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~q~V~~IL~~N--r~KLl~~l~  310 (342)
T KOG1566|consen  236 LGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKPQPVRDILVRN--RPKLLELLH  310 (342)
T ss_pred             HHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCCCchHHHHHHhC--cHHHHHHHH
Confidence            9999998888776654    4678899999999888999999999998888753    33333332  345555554

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=80.57  E-value=8.6  Score=35.87  Aligned_cols=142  Identities=15%  Similarity=0.107  Sum_probs=83.4

Q ss_pred             HHHHhhcC--CCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcc-cChhhHHHHH
Q 006494          365 SLIQNLSS--SQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLS-LDETNKRHIA  441 (643)
Q Consensus       365 ~Lv~~L~s--~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs-~~~~~k~~i~  441 (643)
                      .++..|..  ..+++|..++-.+..+-   +..+..+.+ -.-+++-..+..++.+....++.++..|- ..++....+.
T Consensus         7 ~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~~-~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~   82 (157)
T PF11701_consen    7 TLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFKE-KISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELF   82 (157)
T ss_dssp             HHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHHH-HHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHC
T ss_pred             HHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHHH-HHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHH
Confidence            34444432  34456666555554442   222222221 12234444555544556667777776654 4566666666


Q ss_pred             -hcCChHHHHHHHc--cCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccC-Chh-hHHHHHHHHHH
Q 006494          442 -REGAIPAIIEILQ--NGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYG-SIR-GKKDAATALFN  511 (643)
Q Consensus       442 -~~g~i~~Lv~lL~--~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~-~~~-~k~~A~~aL~n  511 (643)
                       ..|.++.++.++.  ..+...+ .++.=+.+.+..++.+.......+++.|-++++.+ +.. ++..|+..|.-
T Consensus        83 ~~eg~~~~l~~~~~~~~~~~~~~-~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen   83 LSEGFLESLLPLASRKSKDRKVQ-KAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             CTTTHHHHHHHHHH-CTS-HHHH-HHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHhcccCCHHHH-HHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence             7899999999998  4444444 44444555566677666666677889999999644 555 67777776653

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=80.01  E-value=24  Score=41.29  Aligned_cols=90  Identities=23%  Similarity=0.228  Sum_probs=64.4

Q ss_pred             HHHHhhc-CCCchHHHHhcCcHHHHHHHhcc-CChhhHHHHHHHHHHHhCChhhHHHHHhcCcH--HHHHHHHhcCCh-H
Q 006494          508 ALFNLSI-NQSNKSRAIKAGIIPSLLKLLED-KALGMVDEALSILQLLASHPEGRNEIGRLSFI--ETLVEIIKNGTP-K  582 (643)
Q Consensus       508 aL~nLs~-~~en~~~iv~~G~v~~Lv~lL~~-~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i--~~Lv~lL~~~s~-~  582 (643)
                      +|+++.. +++++..+++.|++..+...+.. .+..+...++.++.|++...+.+....-...+  ..+-.++...+. +
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e  573 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE  573 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence            7888886 77889999999999999999976 56788999999999999876544333222222  233334444443 5


Q ss_pred             HHHHHHHHHHHhccC
Q 006494          583 NKECATSVLLELGLN  597 (643)
Q Consensus       583 ~ke~A~~~L~~L~~~  597 (643)
                      .-.+|+.+|..+...
T Consensus       574 rsY~~~siLa~ll~~  588 (699)
T KOG3665|consen  574 RSYNAASILALLLSD  588 (699)
T ss_pred             HHHHHHHHHHHHHhC
Confidence            566788888877765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	643
1t1h_A	78	Nmr Solution Structure Of The U Box Domain From Atp		2e-24
4hxt_A	252	Crystal Structure Of Engineered Protein. Northeast		3e-07
4db8_A	252	Designed Armadillo-Repeat Protein Length = 252		3e-06
2z6g_A	780	Crystal Structure Of A Full-Length Zebrafish Beta-C		6e-05
2z6h_A	644	Crystal Structure Of Beta-Catenin Armadillo Repeat		2e-04
4db9_A	210	Designed Armadillo Repeat Protein (Yiiim3aiii) Leng		2e-04
1i7x_A	538	Beta-CateninE-Cadherin Complex Length = 538		3e-04
1jpw_A	540	Crystal Structure Of A Human Tcf-4 BETA-Catenin Com		3e-04
2gl7_A	550	Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX		3e-04
3ouw_A	540	Structure Of Beta-Catenin With Lef-1 Length = 540		3e-04
2bct_A	516	The Armadillo Repeat Region From Murine Beta-Cateni		3e-04
1qz7_A	533	Beta-Catenin Binding Domain Of Axin In Complex With		3e-04
1t08_A	519	Crystal Structure Of Beta-CateninICAT HELICAL Domai		3e-04
3tx7_A	527	Crystal Structure Of Lrh-1BETA-Catenin Complex Leng		3e-04
4dba_A	210	Designed Armadillo Repeat Protein (Yiim3aii) Length		4e-04
1jdh_A	529	Crystal Structure Of Beta-Catenin And Htcf-4 Length		4e-04
1g3j_A	532	Crystal Structure Of The Xtcf3-CbdBETA-Catenin Arma		4e-04
1luj_A	514	Crystal Structure Of The Beta-CateninICAT COMPLEX L		4e-04
4djs_A	518	Structure Of Beta-Catenin In Complex With A Stapled		4e-04
4db6_A	210	Designed Armadillo Repeat Protein (Yiiim3aii) Lengt		6e-04

>pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14, An Armadillo Repeat Containing Protein From Arabidopsis Thaliana Length = 78

Iteration: 1
 Score =  111 bits (277), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 44/73 (60%), Positives = 56/73 (76%)
Query: 270 PHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALR 329
           P  F CP++LE+M DPVIV+TGQTYER SIQ+WL++ HKTCPK+ + L H  L PNY L+
Sbjct: 6   PEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLK 65
Query: 330 NLIVQWCEKNNVE 342
           +LI  WCE N +E
Sbjct: 66  SLIALWCESNGIE 78

>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 84/163 (51%), Gaps = 5/163 (3%)
Query: 399 IANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSL--DETNKRHIAREGAIPAIIEILQNG 456
           I + GG+  LV+LL+  DS++Q+    AL N++   DE  K  I   G +  ++++L + 
Sbjct: 40  IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK-AIVDAGGVEVLVKLLTST 98
Query: 457 TNEARENSAAALFSL-SMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSIN 515
            +E ++ +A AL ++ S  DE    + +  G+  LV LL       +K+AA AL N++  
Sbjct: 99  DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG 158
Query: 516 QSNKSRAI-KAGIIPSLLKLLEDKALGMVDEALSILQLLASHP 557
                +AI  AG +  L+KLL      +  EA   L  +AS P
Sbjct: 159 PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP 201

>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 93/180 (51%), Gaps = 13/180 (7%)
Query: 403 GGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNK-RHIAREGAIPAIIEILQNGTNEAR 461
           G +  LVQLLS P+ +I +  + AL N++     + + +   GA+PA++++L +   +  
Sbjct: 54  GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL 113
Query: 462 ENSAAALFSLSML----DENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQS 517
           +    AL++LS +    +E    V +   +P LV LL   + +  ++A  AL N++   +
Sbjct: 114 QE---ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170
Query: 518 NKSRA-IKAGIIPSLLKLLEDKALGMVDEALSILQLLAS----HPEGRNEIGRLSFIETL 572
            + +A I AG +P+L++LL      ++ EAL  L  +AS      +   E G L  +E L
Sbjct: 171 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQL 230

>pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin Length = 780

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 109/252 (43%), Gaps = 13/252 (5%)
Query: 397 ILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAR-EGAIPAIIEILQN 455
           + I  +GGI  LV +L  P   +  H +T L NL L +   +   R  G +  ++ +L N
Sbjct: 228 LAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL-N 286
Query: 456 GTNEARENSAAALFSLSML----DENRVMVGNLNGIPPLVNLLR-YGSIRGKKDAATALF 510
            TN   +  A     L +L     E+++++    G   LVN++R Y   +     +  L 
Sbjct: 287 KTN--VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 344
Query: 511 NLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIE 570
            LS+  SNK   ++AG + +L   L D +  +V   L  L+ L+       + G    + 
Sbjct: 345 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD--AATKQEGMEGLLG 402
Query: 571 TLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVE-ITRCGTNRG-QRK 628
           TLV+++ +       CA  +L  L  NN    +   Q G  E LV  + R G        
Sbjct: 403 TLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEP 462
Query: 629 ANSLLQHMSKRE 640
           A   L+H++ R 
Sbjct: 463 AICALRHLTSRH 474

>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region And Its C-Terminal Domain Length = 644

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 107/247 (43%), Gaps = 7/247 (2%)
Query: 399 IANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAR-EGAIPAIIEILQNGT 457
           I  +GGI  LV++L  P   +  + +T L NL L +   +   R  G +  ++ +L    
Sbjct: 94  IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN 153
Query: 458 NEARENSAAALFSLSMLD-ENRVMVGNLNGIPPLVNLLR-YGSIRGKKDAATALFNLSIN 515
            +    +   L  L+  + E+++++    G   LVN++R Y   +     +  L  LS+ 
Sbjct: 154 VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 213
Query: 516 QSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEI 575
            SNK   ++AG + +L   L D +  +V   L  L+ L+       + G    + TLV++
Sbjct: 214 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD--AATKQEGMEGLLGTLVQL 271
Query: 576 IKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVE-ITRCGTNRG-QRKANSLL 633
           + +       CA  +L  L  NN    +   Q G  E LV  + R G        A   L
Sbjct: 272 LGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 331
Query: 634 QHMSKRE 640
           +H++ R 
Sbjct: 332 RHLTSRH 338

>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii) Length = 210

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 83/160 (51%), Gaps = 9/160 (5%)
Query: 403 GGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNK-RHIAREGAIPAIIEILQNGTNEAR 461
           G +  LVQLLS P+ +I +  + AL N++     + + +   GA+PA++++L +   +  
Sbjct: 54  GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL 113
Query: 462 ENSAAALFSLSML----DENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQS 517
           +    AL++LS +    +E    V +   +P LV LL   + +  ++A  AL N++   +
Sbjct: 114 QE---ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170
Query: 518 NKSRAIK-AGIIPSLLKLLEDKALGMVDEALSILQLLASH 556
            + +A+K AG  P+L +L       +  EA   L+ + SH
Sbjct: 171 EQKQAVKEAGAEPALEQLQSSPNEKIQKEAQEALEKIQSH 210

>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex Length = 538

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 109/250 (43%), Gaps = 13/250 (5%)
Query: 399 IANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAR-EGAIPAIIEILQNGT 457
           I  +GGI  LV++L  P   +  + +T L NL L +   +   R  G +  ++ +L N T
Sbjct: 98  IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL-NKT 156
Query: 458 NEARENSAAALFSLSML----DENRVMVGNLNGIPPLVNLLR-YGSIRGKKDAATALFNL 512
           N   +  A     L +L     E+++++    G   LVN++R Y   +     +  L  L
Sbjct: 157 NV--KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 214
Query: 513 SINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETL 572
           S+  SNK   ++AG + +L   L D +  +V   L  L+ L+       + G    + TL
Sbjct: 215 SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD--AATKQEGMEGLLGTL 272
Query: 573 VEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVE-ITRCGTNRG-QRKAN 630
           V+++ +       CA  +L  L  NN    +   Q G  E LV  + R G        A 
Sbjct: 273 VQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAI 332
Query: 631 SLLQHMSKRE 640
             L+H++ R 
Sbjct: 333 CALRHLTSRH 342

>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex Length = 540

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 109/250 (43%), Gaps = 13/250 (5%)
Query: 399 IANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAR-EGAIPAIIEILQNGT 457
           I  +GGI  LV++L  P   +  + +T L NL L +   +   R  G +  ++ +L N T
Sbjct: 101 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL-NKT 159
Query: 458 NEARENSAAALFSLSML----DENRVMVGNLNGIPPLVNLLR-YGSIRGKKDAATALFNL 512
           N   +  A     L +L     E+++++    G   LVN++R Y   +     +  L  L
Sbjct: 160 NV--KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 217
Query: 513 SINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETL 572
           S+  SNK   ++AG + +L   L D +  +V   L  L+ L+       + G    + TL
Sbjct: 218 SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD--AATKQEGMEGLLGTL 275
Query: 573 VEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVE-ITRCGTNRG-QRKAN 630
           V+++ +       CA  +L  L  NN    +   Q G  E LV  + R G        A 
Sbjct: 276 VQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAI 335
Query: 631 SLLQHMSKRE 640
             L+H++ R 
Sbjct: 336 CALRHLTSRH 345

>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX Length = 550

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 109/250 (43%), Gaps = 13/250 (5%)
Query: 399 IANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAR-EGAIPAIIEILQNGT 457
           I  +GGI  LV++L  P   +  + +T L NL L +   +   R  G +  ++ +L N T
Sbjct: 95  IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL-NKT 153
Query: 458 NEARENSAAALFSLSML----DENRVMVGNLNGIPPLVNLLR-YGSIRGKKDAATALFNL 512
           N   +  A     L +L     E+++++    G   LVN++R Y   +     +  L  L
Sbjct: 154 NV--KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 211
Query: 513 SINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETL 572
           S+  SNK   ++AG + +L   L D +  +V   L  L+ L+       + G    + TL
Sbjct: 212 SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD--AATKQEGMEGLLGTL 269
Query: 573 VEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVE-ITRCGTNRG-QRKAN 630
           V+++ +       CA  +L  L  NN    +   Q G  E LV  + R G        A 
Sbjct: 270 VQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAI 329
Query: 631 SLLQHMSKRE 640
             L+H++ R 
Sbjct: 330 CALRHLTSRH 339

>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1 Length = 540

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 109/250 (43%), Gaps = 13/250 (5%)
Query: 399 IANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAR-EGAIPAIIEILQNGT 457
           I  +GGI  LV++L  P   +  + +T L NL L +   +   R  G +  ++ +L N T
Sbjct: 100 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL-NKT 158
Query: 458 NEARENSAAALFSLSML----DENRVMVGNLNGIPPLVNLLR-YGSIRGKKDAATALFNL 512
           N   +  A     L +L     E+++++    G   LVN++R Y   +     +  L  L
Sbjct: 159 NV--KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 216
Query: 513 SINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETL 572
           S+  SNK   ++AG + +L   L D +  +V   L  L+ L+       + G    + TL
Sbjct: 217 SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD--AATKQEGMEGLLGTL 274
Query: 573 VEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVE-ITRCGTNRG-QRKAN 630
           V+++ +       CA  +L  L  NN    +   Q G  E LV  + R G        A 
Sbjct: 275 VQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAI 334
Query: 631 SLLQHMSKRE 640
             L+H++ R 
Sbjct: 335 CALRHLTSRH 344

>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin Length = 516

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 109/250 (43%), Gaps = 13/250 (5%)
Query: 399 IANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAR-EGAIPAIIEILQNGT 457
           I  +GGI  LV++L  P   +  + +T L NL L +   +   R  G +  ++ +L N T
Sbjct: 82  IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL-NKT 140
Query: 458 NEARENSAAALFSLSML----DENRVMVGNLNGIPPLVNLLR-YGSIRGKKDAATALFNL 512
           N   +  A     L +L     E+++++    G   LVN++R Y   +     +  L  L
Sbjct: 141 NV--KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 198
Query: 513 SINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETL 572
           S+  SNK   ++AG + +L   L D +  +V   L  L+ L+       + G    + TL
Sbjct: 199 SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD--AATKQEGMEGLLGTL 256
Query: 573 VEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVE-ITRCGTNRG-QRKAN 630
           V+++ +       CA  +L  L  NN    +   Q G  E LV  + R G        A 
Sbjct: 257 VQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAI 316
Query: 631 SLLQHMSKRE 640
             L+H++ R 
Sbjct: 317 CALRHLTSRH 326

>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta- Catenin Length = 533

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 109/250 (43%), Gaps = 13/250 (5%)
Query: 399 IANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAR-EGAIPAIIEILQNGT 457
           I  +GGI  LV++L  P   +  + +T L NL L +   +   R  G +  ++ +L N T
Sbjct: 99  IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL-NKT 157
Query: 458 NEARENSAAALFSLSML----DENRVMVGNLNGIPPLVNLLR-YGSIRGKKDAATALFNL 512
           N   +  A     L +L     E+++++    G   LVN++R Y   +     +  L  L
Sbjct: 158 NV--KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 215
Query: 513 SINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETL 572
           S+  SNK   ++AG + +L   L D +  +V   L  L+ L+       + G    + TL
Sbjct: 216 SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD--AATKQEGMEGLLGTL 273
Query: 573 VEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVE-ITRCGTNRG-QRKAN 630
           V+++ +       CA  +L  L  NN    +   Q G  E LV  + R G        A 
Sbjct: 274 VQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAI 333
Query: 631 SLLQHMSKRE 640
             L+H++ R 
Sbjct: 334 CALRHLTSRH 343

>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL DomainUNPHOSPHORYLATED APC R3 Length = 519

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 109/250 (43%), Gaps = 13/250 (5%)
Query: 399 IANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAR-EGAIPAIIEILQNGT 457
           I  +GGI  LV++L  P   +  + +T L NL L +   +   R  G +  ++ +L N T
Sbjct: 86  IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL-NKT 144
Query: 458 NEARENSAAALFSLSML----DENRVMVGNLNGIPPLVNLLR-YGSIRGKKDAATALFNL 512
           N   +  A     L +L     E+++++    G   LVN++R Y   +     +  L  L
Sbjct: 145 NV--KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 202
Query: 513 SINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETL 572
           S+  SNK   ++AG + +L   L D +  +V   L  L+ L+       + G    + TL
Sbjct: 203 SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD--AATKQEGMEGLLGTL 260
Query: 573 VEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVE-ITRCGTNRG-QRKAN 630
           V+++ +       CA  +L  L  NN    +   Q G  E LV  + R G        A 
Sbjct: 261 VQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAI 320
Query: 631 SLLQHMSKRE 640
             L+H++ R 
Sbjct: 321 CALRHLTSRH 330

>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex Length = 527

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 109/250 (43%), Gaps = 13/250 (5%)
Query: 399 IANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAR-EGAIPAIIEILQNGT 457
           I  +GGI  LV++L  P   +  + +T L NL L +   +   R  G +  ++ +L N T
Sbjct: 95  IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL-NKT 153
Query: 458 NEARENSAAALFSLSML----DENRVMVGNLNGIPPLVNLLR-YGSIRGKKDAATALFNL 512
           N   +  A     L +L     E+++++    G   LVN++R Y   +     +  L  L
Sbjct: 154 NV--KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 211
Query: 513 SINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETL 572
           S+  SNK   ++AG + +L   L D +  +V   L  L+ L+       + G    + TL
Sbjct: 212 SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD--AATKQEGMEGLLGTL 269
Query: 573 VEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVE-ITRCGTNRG-QRKAN 630
           V+++ +       CA  +L  L  NN    +   Q G  E LV  + R G        A 
Sbjct: 270 VQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAI 329
Query: 631 SLLQHMSKRE 640
             L+H++ R 
Sbjct: 330 CALRHLTSRH 339

>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 83/160 (51%), Gaps = 9/160 (5%)
Query: 403 GGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNK-RHIAREGAIPAIIEILQNGTNEAR 461
           G +  LVQLLS P+ +I +  + AL N++     + + +   GA+PA++++L +   +  
Sbjct: 54  GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL 113
Query: 462 ENSAAALFSLSML----DENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQS 517
           +    AL++LS +    +E    V +   +P LV LL   + +  ++A  AL N++   +
Sbjct: 114 QE---ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170
Query: 518 NKSRAIK-AGIIPSLLKLLEDKALGMVDEALSILQLLASH 556
            + +A+K AG +  L +L   +   +  EA   L+ L SH
Sbjct: 171 EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 210

>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4 Length = 529

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 109/250 (43%), Gaps = 13/250 (5%)
Query: 399 IANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAR-EGAIPAIIEILQNGT 457
           I  +GGI  LV++L  P   +  + +T L NL L +   +   R  G +  ++ +L N T
Sbjct: 97  IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL-NKT 155
Query: 458 NEARENSAAALFSLSML----DENRVMVGNLNGIPPLVNLLR-YGSIRGKKDAATALFNL 512
           N   +  A     L +L     E+++++    G   LVN++R Y   +     +  L  L
Sbjct: 156 NV--KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 213
Query: 513 SINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETL 572
           S+  SNK   ++AG + +L   L D +  +V   L  L+ L+       + G    + TL
Sbjct: 214 SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD--AATKQEGMEGLLGTL 271
Query: 573 VEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVE-ITRCGTNRG-QRKAN 630
           V+++ +       CA  +L  L  NN    +   Q G  E LV  + R G        A 
Sbjct: 272 VQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAI 331
Query: 631 SLLQHMSKRE 640
             L+H++ R 
Sbjct: 332 CALRHLTSRH 341

>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo Repeat Complex Length = 532

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 109/250 (43%), Gaps = 13/250 (5%)
Query: 399 IANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAR-EGAIPAIIEILQNGT 457
           I  +GGI  LV++L  P   +  + +T L NL L +   +   R  G +  ++ +L N T
Sbjct: 99  IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL-NKT 157
Query: 458 NEARENSAAALFSLSML----DENRVMVGNLNGIPPLVNLLR-YGSIRGKKDAATALFNL 512
           N   +  A     L +L     E+++++    G   LVN++R Y   +     +  L  L
Sbjct: 158 NV--KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 215
Query: 513 SINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETL 572
           S+  SNK   ++AG + +L   L D +  +V   L  L+ L+       + G    + TL
Sbjct: 216 SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD--AATKQEGMEGLLGTL 273
Query: 573 VEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVE-ITRCGTNRG-QRKAN 630
           V+++ +       CA  +L  L  NN    +   Q G  E LV  + R G        A 
Sbjct: 274 VQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAI 333
Query: 631 SLLQHMSKRE 640
             L+H++ R 
Sbjct: 334 CALRHLTSRH 343

>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX Length = 514

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 109/250 (43%), Gaps = 13/250 (5%)
Query: 399 IANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAR-EGAIPAIIEILQNGT 457
           I  +GGI  LV++L  P   +  + +T L NL L +   +   R  G +  ++ +L N T
Sbjct: 82  IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL-NKT 140
Query: 458 NEARENSAAALFSLSML----DENRVMVGNLNGIPPLVNLLR-YGSIRGKKDAATALFNL 512
           N   +  A     L +L     E+++++    G   LVN++R Y   +     +  L  L
Sbjct: 141 NV--KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 198
Query: 513 SINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETL 572
           S+  SNK   ++AG + +L   L D +  +V   L  L+ L+       + G    + TL
Sbjct: 199 SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD--AATKQEGMEGLLGTL 256
Query: 573 VEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVE-ITRCGTNRG-QRKAN 630
           V+++ +       CA  +L  L  NN    +   Q G  E LV  + R G        A 
Sbjct: 257 VQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAI 316
Query: 631 SLLQHMSKRE 640
             L+H++ R 
Sbjct: 317 CALRHLTSRH 326

>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled Peptide Inhibitor Length = 518

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 109/250 (43%), Gaps = 13/250 (5%)
Query: 399 IANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAR-EGAIPAIIEILQNGT 457
           I  +GGI  LV++L  P   +  + +T L NL L +   +   R  G +  ++ +L N T
Sbjct: 84  IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL-NKT 142
Query: 458 NEARENSAAALFSLSML----DENRVMVGNLNGIPPLVNLLR-YGSIRGKKDAATALFNL 512
           N   +  A     L +L     E+++++    G   LVN++R Y   +     +  L  L
Sbjct: 143 NV--KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 200
Query: 513 SINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETL 572
           S+  SNK   ++AG + +L   L D +  +V   L  L+ L+       + G    + TL
Sbjct: 201 SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD--AATKQEGMEGLLGTL 258
Query: 573 VEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVE-ITRCGTNRG-QRKAN 630
           V+++ +       CA  +L  L  NN    +   Q G  E LV  + R G        A 
Sbjct: 259 VQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAI 318
Query: 631 SLLQHMSKRE 640
             L+H++ R 
Sbjct: 319 CALRHLTSRH 328

>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii) Length = 210

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 83/160 (51%), Gaps = 9/160 (5%)
Query: 403 GGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNK-RHIAREGAIPAIIEILQNGTNEAR 461
           G +  LVQLLS P+ +I +  + AL N++     + + +   GA+PA++++L +   +  
Sbjct: 54  GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL 113
Query: 462 ENSAAALFSLSML----DENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQS 517
           +    AL++LS +    +E    V +   +P LV LL   + +  ++A  AL N++   +
Sbjct: 114 QE---ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170
Query: 518 NKSRAIK-AGIIPSLLKLLEDKALGMVDEALSILQLLASH 556
            + +A+K AG +  L +L   +   +  EA   L+ L SH
Sbjct: 171 EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 210

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	643
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	3e-61
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	1e-36
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	5e-36
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	7e-30
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	2e-05
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	8e-56
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	4e-49
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	5e-42
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	5e-39
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	3e-33
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-28
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	2e-55
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	3e-31
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	3e-31
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	1e-16
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	6e-55
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	9e-41
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-39
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	3e-29
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	7e-19
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	5e-48
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	1e-37
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	3e-30
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	6e-28
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	6e-48
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	4e-42
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-40
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-37
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	4e-28
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	5e-18
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	1e-43
3nmz_A	458	APC variant protein; protein-protein complex, arma	2e-43
3nmz_A	458	APC variant protein; protein-protein complex, arma	6e-33
3nmz_A	458	APC variant protein; protein-protein complex, arma	9e-29
3nmz_A	458	APC variant protein; protein-protein complex, arma	1e-26
3nmz_A	458	APC variant protein; protein-protein complex, arma	4e-24
3nmz_A	458	APC variant protein; protein-protein complex, arma	2e-17
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	8e-43
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-30
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	6e-27
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	6e-25
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	9e-23
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	7e-14
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-06
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	2e-42
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	8e-36
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	3e-26
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	9e-25
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-24
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	3e-20
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	2e-35
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	2e-34
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	6e-31
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	4e-23
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	1e-17
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	2e-10
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	1e-05
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	7e-32
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	4e-24
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	6e-24
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-18
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	7e-16
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-15
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	2e-31
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	9e-31
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	5e-24
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	5e-21
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	3e-20
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-05
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	2e-30
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	7e-29
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	2e-22
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	3e-04
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	4e-28
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	2e-25
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	1e-10
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	8e-10
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	3e-24
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	3e-20
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	4e-20
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	2e-12
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	2e-18
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	6e-18
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-07
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	3e-12
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	3e-09
3grl_A	651	General vesicular transport factor P115; vesicle t	4e-09
3grl_A	651	General vesicular transport factor P115; vesicle t	2e-07
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	5e-08
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	1e-07
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	7e-06
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	8e-06
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	2e-05
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	6e-07
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	7e-07
1z6u_A	150	NP95-like ring finger protein isoform B; structura	2e-06
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	4e-06
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	7e-06
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	1e-05
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	3e-05
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	1e-04
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	3e-05
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	3e-05
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	5e-05
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	5e-05
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	7e-05
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	1e-04
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	1e-04
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	1e-04
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	1e-04
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	2e-04
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	4e-04
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	8e-04

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  203 bits (518), Expect = 3e-61
 Identities = 53/238 (22%), Positives = 115/238 (48%), Gaps = 4/238 (1%)

Query: 361 EEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQ 420
            E+  + Q L+S  +  +  +  K   +  +  +    + + G +  LVQLLS P+ +I 
Sbjct: 12  SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQIL 71

Query: 421 EHTVTALLNLSL-DETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSML-DENR 478
           +  + AL N++       + +   GA+PA++++L +   +  + +  AL +++   +E  
Sbjct: 72  QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131

Query: 479 VMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAI-KAGIIPSLLKLLED 537
             V +   +P LV LL   + +  ++A  AL N++   + + +A+  AG +P+L++LL  
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS 191

Query: 538 KALGMVDEALSIL-QLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLEL 594
               ++ EAL  L  + +   E +  +     +E L ++  +   K ++ A   L +L
Sbjct: 192 PNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 249

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  137 bits (346), Expect = 1e-36
 Identities = 48/248 (19%), Positives = 103/248 (41%), Gaps = 4/248 (1%)

Query: 395 NRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDET-NKRHIAREGAIPAIIEIL 453
           +     +   +  + Q L+  D + Q         +  D     + +   GA+PA++++L
Sbjct: 4   SHHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLL 63

Query: 454 QNGTNEARENSAAALFSLSM-LDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNL 512
            +   +  + +  AL +++   +E    V +   +P LV LL   + +  ++A  AL N+
Sbjct: 64  SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 123

Query: 513 S-INQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH-PEGRNEIGRLSFIE 570
           +          I AG +P+L++LL      ++ EAL  L  +AS   E    +     + 
Sbjct: 124 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALP 183

Query: 571 TLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKAN 630
            LV+++ +   +  + A   L  +    +    A  + G  E L ++      + Q++A 
Sbjct: 184 ALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQ 243

Query: 631 SLLQHMSK 638
             L+ +  
Sbjct: 244 EALEKLQS 251

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  135 bits (341), Expect = 5e-36
 Identities = 47/194 (24%), Positives = 98/194 (50%), Gaps = 3/194 (1%)

Query: 366 LIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVT 425
           L+Q LSS    I ++++  +  ++    +    + + G +  LVQLLS P+ +I +  + 
Sbjct: 59  LVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALW 118

Query: 426 ALLNLSLDETNKR-HIAREGAIPAIIEILQNGTNEARENSAAALFSLSML-DENRVMVGN 483
           AL N++     +   +   GA+PA++++L +   +  + +  AL +++   +E    V +
Sbjct: 119 ALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 178

Query: 484 LNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAI-KAGIIPSLLKLLEDKALGM 542
              +P LV LL   + +  ++A  AL N++   + + +A+ +AG +  L +L   +   +
Sbjct: 179 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKI 238

Query: 543 VDEALSILQLLASH 556
             EA   L+ L SH
Sbjct: 239 QKEAQEALEKLQSH 252

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  117 bits (295), Expect = 7e-30
 Identities = 37/170 (21%), Positives = 84/170 (49%), Gaps = 4/170 (2%)

Query: 350 TGSDASSAALIEE--ICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRP 407
           +G +    A+I+   + +L+Q LSS    I ++++  +  ++    +    + + G +  
Sbjct: 83  SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPA 142

Query: 408 LVQLLSYPDSKIQEHTVTALLNLSLDET-NKRHIAREGAIPAIIEILQNGTNEARENSAA 466
           LVQLLS P+ +I +  + AL N++       + +   GA+PA++++L +   +  + +  
Sbjct: 143 LVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALW 202

Query: 467 ALFSLSML-DENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSIN 515
           AL +++   +E +  V     +  L  L  + + + +K+A  AL  L  +
Sbjct: 203 ALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 252

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 15/115 (13%), Positives = 38/115 (33%), Gaps = 1/115 (0%)

Query: 516 QSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH-PEGRNEIGRLSFIETLVE 574
           + +         +P + + L    +     A      + S   E    +     +  LV+
Sbjct: 2   RGSHHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQ 61

Query: 575 IIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKA 629
           ++ +   +  + A   L  +    +  I A +  G    LV++      +  ++A
Sbjct: 62  LLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA 116

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  197 bits (502), Expect = 8e-56
 Identities = 62/289 (21%), Positives = 123/289 (42%), Gaps = 10/289 (3%)

Query: 352 SDASSAALIEE---ICSLIQNLSSSQ-LNIKRDSVMKIRMLSKENPDNRILIANNGGIRP 407
            +AS  A++     + ++++ + ++  +   R +   +  LS  + +  + I  +GGI  
Sbjct: 47  KEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPA 105

Query: 408 LVQLLSYPDSKIQEHTVTALLNLSLD-ETNKRHIAREGAIPAIIEILQNGTNEARENSAA 466
           LV++L  P   +  + +T L NL L  E  K  +   G +  ++ +L     +    +  
Sbjct: 106 LVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTD 165

Query: 467 ALFSLSMLD-ENRVMVGNLNGIPPLVNLLRYGSIRGKKDAAT-ALFNLSINQSNKSRAIK 524
            L  L+  + E+++++    G   LVN++R  +        +  L  LS+  SNK   ++
Sbjct: 166 CLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE 225

Query: 525 AGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNK 584
           AG + +L   L D +  +V   L  L+ L+       + G    + TLV+++ +      
Sbjct: 226 AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT--KQEGMEGLLGTLVQLLGSDDINVV 283

Query: 585 ECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLL 633
            CA  +L  L  NN    +   Q G  E LV       +R      ++ 
Sbjct: 284 TCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAIC 332

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  178 bits (454), Expect = 4e-49
 Identities = 45/279 (16%), Positives = 107/279 (38%), Gaps = 7/279 (2%)

Query: 363 ICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYP-DSKIQE 421
           I  L + L+     +   + + +  LSK+      ++ +   +  +V+ +    D +   
Sbjct: 19  IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETAR 78

Query: 422 HTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDE-NRVM 480
            T   L NLS        I + G IPA++++L +  +     +   L +L +  E  ++ 
Sbjct: 79  CTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA 138

Query: 481 VGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSI-NQSNKSRAIKAGIIPSLLKLLEDK- 538
           V    G+  +V LL   +++        L  L+  NQ +K   + +G   +L+ ++    
Sbjct: 139 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 198

Query: 539 ALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNN 598
              ++     +L++L+     +  I     ++ L   + + + +  +     L  L    
Sbjct: 199 YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA 258

Query: 599 SYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMS 637
           +         G+   LV++           A  +L +++
Sbjct: 259 TKQEGME---GLLGTLVQLLGSDDINVVTCAAGILSNLT 294

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  158 bits (402), Expect = 5e-42
 Identities = 64/302 (21%), Positives = 111/302 (36%), Gaps = 34/302 (11%)

Query: 366 LIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVT 425
           L  +L+     + ++ +  +R LS +    +  +   G +  LVQLL   D  +      
Sbjct: 232 LGLHLTDPSQRLVQNCLWTLRNLS-DAATKQEGME--GLLGTLVQLLGSDDINVVTCAAG 288

Query: 426 ALLNLSLDET-NKRHIAREGAIPAIIEILQNGTN--EARENSAAALFSLS----MLDENR 478
            L NL+ +   NK  + + G I A++  +    +  +  E +  AL  L+      +  +
Sbjct: 289 ILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQ 348

Query: 479 VMVGNLNGIPPLVNLLRYGSIRGKKDAATALF-NLSINQSNKSRAIKAGIIPSLLKLLED 537
             V    G+P +V LL   S      A   L  NL++  +N +   + G IP L++LL  
Sbjct: 349 NAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVR 408

Query: 538 K----------------------ALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEI 575
                                     +V+     L +LA     R  I  L+ I   V++
Sbjct: 409 AHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQL 468

Query: 576 IKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQH 635
           + +     +  A  VL EL  +      A    G    L E+           A ++L  
Sbjct: 469 LYSPIENIQRVAAGVLCELAQDKEA-AEAIEAEGATAPLTELLHSRNEGVATYAAAVLFR 527

Query: 636 MS 637
           MS
Sbjct: 528 MS 529

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  149 bits (379), Expect = 5e-39
 Identities = 59/258 (22%), Positives = 101/258 (39%), Gaps = 7/258 (2%)

Query: 385 IRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIARE- 443
           +  L     D          I  L +LL+  D  +       +  LS  E ++  I R  
Sbjct: 2   VVNLINYQDDA---ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSP 58

Query: 444 GAIPAIIEILQNGTN-EARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGK 502
             + AI+  +QN  + E    +A  L +LS   E  + +    GIP LV +L        
Sbjct: 59  QMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVL 118

Query: 503 KDAATALFNLSINQSNKSRAI-KAGIIPSLLKLLEDKALGMVDEALSILQLLA-SHPEGR 560
             A T L NL ++Q     A+  AG +  ++ LL    +  +      LQ+LA  + E +
Sbjct: 119 FYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK 178

Query: 561 NEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRC 620
             I      + LV I++  T +     TS +L++    S    A ++ G  + L      
Sbjct: 179 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD 238

Query: 621 GTNRGQRKANSLLQHMSK 638
            + R  +     L+++S 
Sbjct: 239 PSQRLVQNCLWTLRNLSD 256

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  133 bits (336), Expect = 3e-33
 Identities = 51/304 (16%), Positives = 108/304 (35%), Gaps = 31/304 (10%)

Query: 366 LIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVT 425
           L+  + +        +  ++  +      N+  I   GG++ L   L+ P  ++ ++ + 
Sbjct: 190 LVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLW 249

Query: 426 ALLNLSLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSM-LDENRVMVGNL 484
            L NLS   T +     EG +  ++++L +        +A  L +L+    +N++MV  +
Sbjct: 250 TLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV 307

Query: 485 NGIPPLVNLLRYGSIRG--KKDAATALFNLSINQSNKSRAI----KAGIIPSLLKLLED- 537
            GI  LV  +     R    + A  AL +L+        A         +P ++KLL   
Sbjct: 308 GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPP 367

Query: 538 KALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECA---------- 587
               ++   + +++ LA  P     +     I  LV+++       +             
Sbjct: 368 SHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFV 427

Query: 588 TSVLLELGLNNSYFILAAL-----------QYGVYEHLVEITRCGTNRGQRKANSLLQHM 636
             V +E  +      L  L                   V++        QR A  +L  +
Sbjct: 428 EGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL 487

Query: 637 SKRE 640
           ++ +
Sbjct: 488 AQDK 491

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  119 bits (299), Expect = 1e-28
 Identities = 45/235 (19%), Positives = 93/235 (39%), Gaps = 30/235 (12%)

Query: 350 TGSDASSAALIEE--ICSLIQNL--SSSQLNIKRDSVMKIRMLS---KENPDNRILIANN 402
             +  +   + +   I +L++ +  +  + +I   ++  +R L+   +E    +  +  +
Sbjct: 295 CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLH 354

Query: 403 GGIRPLVQLLSYPDSKIQEHTVTALL-NLSLDETNKRHIAREGAIPAIIEILQNGTNEAR 461
            G+  +V+LL  P           L+ NL+L   N   +  +GAIP ++++L     + +
Sbjct: 355 YGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQ 414

Query: 462 ----------------------ENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSI 499
                                 E    AL  L+    NR+++  LN IP  V LL     
Sbjct: 415 RRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIE 474

Query: 500 RGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLA 554
             ++ AA  L  L+ ++         G    L +LL  +  G+   A ++L  ++
Sbjct: 475 NIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  186 bits (475), Expect = 2e-55
 Identities = 45/194 (23%), Positives = 97/194 (50%), Gaps = 3/194 (1%)

Query: 366 LIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVT 425
           ++Q L+S      + ++ K+  ++    +    + + G +  LVQLLS P+ +I +  + 
Sbjct: 17  MVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALW 76

Query: 426 ALLNLSLDETNKRH-IAREGAIPAIIEILQNGTNEARENSAAALFSLSML-DENRVMVGN 483
           AL N++     +   +   GA+PA++++L +   +  + +  AL +++   +E    V +
Sbjct: 77  ALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 136

Query: 484 LNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAI-KAGIIPSLLKLLEDKALGM 542
              +P LV LL   + +  ++A  AL N++   + + +A+ +AG +  L +L   +   +
Sbjct: 137 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKI 196

Query: 543 VDEALSILQLLASH 556
             EA   L+ L SH
Sbjct: 197 QKEAQEALEKLQSH 210

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  120 bits (302), Expect = 3e-31
 Identities = 40/208 (19%), Positives = 90/208 (43%), Gaps = 3/208 (1%)

Query: 434 ETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLS-MLDENRVMVGNLNGIPPLVN 492
             +  H      +P +++ L +   +  +++   L  ++   +E    V +   +P LV 
Sbjct: 2   RGSHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQ 61

Query: 493 LLRYGSIRGKKDAATALFNLSINQSNKSRAI-KAGIIPSLLKLLEDKALGMVDEALSILQ 551
           LL   + +  ++A  AL N++   + + +A+  AG +P+L++LL      ++ EAL  L 
Sbjct: 62  LLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 121

Query: 552 LLASH-PEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGV 610
            +AS   E    +     +  LV+++ +   +  + A   L  +    +    A  + G 
Sbjct: 122 NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGA 181

Query: 611 YEHLVEITRCGTNRGQRKANSLLQHMSK 638
            E L ++      + Q++A   L+ +  
Sbjct: 182 LEKLEQLQSHENEKIQKEAQEALEKLQS 209

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  120 bits (302), Expect = 3e-31
 Identities = 41/204 (20%), Positives = 92/204 (45%), Gaps = 4/204 (1%)

Query: 395 NRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSL-DETNKRHIAREGAIPAIIEIL 453
           +     +   +  +VQ L+ PD +  +  +  L  ++       + +   GA+PA++++L
Sbjct: 4   SHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLL 63

Query: 454 QNGTNEARENSAAALFSLSML-DENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNL 512
            +   +  + +  AL +++   +E    V +   +P LV LL   + +  ++A  AL N+
Sbjct: 64  SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 123

Query: 513 S-INQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALS-ILQLLASHPEGRNEIGRLSFIE 570
           +          I AG +P+L++LL      ++ EAL  +  + +   E +  +     +E
Sbjct: 124 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALE 183

Query: 571 TLVEIIKNGTPKNKECATSVLLEL 594
            L ++  +   K ++ A   L +L
Sbjct: 184 KLEQLQSHENEKIQKEAQEALEKL 207

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 78.1 bits (193), Expect = 1e-16
 Identities = 29/158 (18%), Positives = 66/158 (41%), Gaps = 2/158 (1%)

Query: 474 LDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAI-KAGIIPSLL 532
           +  +     + + +P +V  L     +  + A   L  ++   + + +A+  AG +P+L+
Sbjct: 1   MRGSHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALV 60

Query: 533 KLLEDKALGMVDEALSILQLLASH-PEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVL 591
           +LL      ++ EAL  L  +AS   E    +     +  LV+++ +   +  + A   L
Sbjct: 61  QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 120

Query: 592 LELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKA 629
             +    +  I A +  G    LV++      +  ++A
Sbjct: 121 SNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA 158

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  199 bits (507), Expect = 6e-55
 Identities = 69/305 (22%), Positives = 131/305 (42%), Gaps = 10/305 (3%)

Query: 342 ELPKKDTNTGSDASSAALIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIAN 401
           +L KK+ +  +   S  ++  I   +Q  +++ +   R +   +  LS  + +  + I  
Sbjct: 176 QLSKKEASRHAIMRSPQMVSAIVRTMQ--NTNDVETARCTSGTLHNLSH-HREGLLAIFK 232

Query: 402 NGGIRPLVQLLSYPDSKIQEHTVTALLNLSLD-ETNKRHIAREGAIPAIIEILQNGTNEA 460
           +GGI  LV +L  P   +  H +T L NL L  E  K  +   G +  ++ +L     + 
Sbjct: 233 SGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKF 292

Query: 461 RENSAAALFSLSMLD-ENRVMVGNLNGIPPLVNLLRYGSIRGKK-DAATALFNLSINQSN 518
              +   L  L+  + E+++++    G   LVN++R  +        +  L  LS+  SN
Sbjct: 293 LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN 352

Query: 519 KSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKN 578
           K   ++AG + +L   L D +  +V   L  L+ L+     +  +  L  + TLV+++ +
Sbjct: 353 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGL--LGTLVQLLGS 410

Query: 579 GTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSL--LQHM 636
                  CA  +L  L  NN    +   Q G  E LV       +R      ++  L+H+
Sbjct: 411 DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHL 470

Query: 637 SKREH 641
           + R  
Sbjct: 471 TSRHQ 475

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  158 bits (400), Expect = 9e-41
 Identities = 74/361 (20%), Positives = 130/361 (36%), Gaps = 19/361 (5%)

Query: 297 ESIQRWLNSNHKTCP-----KTGQILDHLSLAPNYALRNLIVQWCEKNNV-ELPKKDTNT 350
             +   ++S   T       K     D +     Y       Q   +  V ++  +   T
Sbjct: 29  SYLDSGIHSGATTTAPSLSGKGNPEDDDVDNQVLYEWEQGFNQSFNQEQVADIDGQYAMT 88

Query: 351 GSDASSAALIEEICS------LIQNLSSSQLNIKR---DSVMKIRMLSKENPDNRILIAN 401
            +    AA+  E           Q  S+   N++R    S M    +             
Sbjct: 89  RAQRVRAAMFPETLDEGMQIPSTQFDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDAELA 148

Query: 402 NGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIARE-GAIPAIIEILQNGTN-E 459
              I  L +LL+  D  +       +  LS  E ++  I R    + AI+  +QN  + E
Sbjct: 149 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVE 208

Query: 460 ARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNK 519
               ++  L +LS   E  + +    GIP LVN+L          A T L NL ++Q   
Sbjct: 209 TARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGA 268

Query: 520 SRAI-KAGIIPSLLKLLEDKALGMVDEALSILQLLA-SHPEGRNEIGRLSFIETLVEIIK 577
             A+  AG +  ++ LL    +  +      LQ+LA  + E +  I      + LV I++
Sbjct: 269 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMR 328

Query: 578 NGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMS 637
             T +     TS +L++    S    A ++ G  + L       + R  +     L+++S
Sbjct: 329 TYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS 388

Query: 638 K 638
            
Sbjct: 389 D 389

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  154 bits (389), Expect = 2e-39
 Identities = 55/297 (18%), Positives = 104/297 (35%), Gaps = 31/297 (10%)

Query: 352 SDASSAALIEEIC--SLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLV 409
           SDA++     E    +L+Q L S  +N+   +   +  L+  N  N++++   GGI  LV
Sbjct: 388 SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALV 447

Query: 410 QLL--SYPDSKIQEHTVTALLNLSLD----ETNKRHIAREGAIPAIIEILQNGTNEAREN 463
           + +  +     I E  + AL +L+      E  +  +     +P ++++L   ++     
Sbjct: 448 RTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIK 507

Query: 464 SAAALFS-LSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAA---------------- 506
           +   L   L++   N   +     IP LV LL       ++  +                
Sbjct: 508 ATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEE 567

Query: 507 ------TALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGR 560
                  AL  L+ +  N+        IP  ++LL      +   A  +L  LA   E  
Sbjct: 568 IVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAA 627

Query: 561 NEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEI 617
             I        L E++ +        A +VL  +  +        L   +   L   
Sbjct: 628 EAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRT 684

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  122 bits (308), Expect = 3e-29
 Identities = 40/215 (18%), Positives = 66/215 (30%), Gaps = 25/215 (11%)

Query: 366 LIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQ----- 420
           +++ L          + + +       P N   +   G I  LVQLL       Q     
Sbjct: 493 VVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSM 552

Query: 421 -----------------EHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTNEAREN 463
                            E    AL  L+ D  N+  I     IP  +++L +     +  
Sbjct: 553 GGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRV 612

Query: 464 SAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAI 523
           +A  L  L+   E    +       PL  LL   +      AA  LF +S    +K +  
Sbjct: 613 AAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS---EDKPQDY 669

Query: 524 KAGIIPSLLKLLEDKALGMVDEALSILQLLASHPE 558
           K  +   L   L        +E   +   + +  E
Sbjct: 670 KKRLSVELTSSLFRTEPMTWNETGDLGLDIGAQGE 704

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 90.1 bits (223), Expect = 7e-19
 Identities = 32/154 (20%), Positives = 55/154 (35%), Gaps = 4/154 (2%)

Query: 365 SLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTV 424
           +  Q +   ++    ++      +   +  NRI+I     I   VQLL  P   IQ    
Sbjct: 555 TQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAA 614

Query: 425 TALLNLSLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNL 484
             L  L+ D+     I  EGA   + E+L +        +AA LF +S   E++      
Sbjct: 615 GVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS---EDKPQDYKK 671

Query: 485 NGIPPLVN-LLRYGSIRGKKDAATALFNLSINQS 517
                L + L R   +   +     L   +  + 
Sbjct: 672 RLSVELTSSLFRTEPMTWNETGDLGLDIGAQGEP 705

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  171 bits (435), Expect = 5e-48
 Identities = 50/301 (16%), Positives = 116/301 (38%), Gaps = 27/301 (8%)

Query: 366 LIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYP---------- 415
               + +   +    +V  +  LS  + ++R  +   GG++ + +LL             
Sbjct: 37  DKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDH 95

Query: 416 -DSKIQEHTVTALLNLSL-DETNKRHI-AREGAIPAIIEILQNGTNEARENSAAALFSLS 472
               ++ +   AL NL+  D  NK  + + +G + A++  L++ + + ++  A+ L +LS
Sbjct: 96  YSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLS 155

Query: 473 ML--DENRVMVGNLNGIPPLVNLLRYGSIRG-KKDAATALFNLSINQSNKSRAI--KAGI 527
                 ++  +  +  +  L+            K   +AL+NLS + +     I    G 
Sbjct: 156 WRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGA 215

Query: 528 IPSLLKLL----EDKALGMVDEALSIL----QLLASHPEGRNEIGRLSFIETLVEIIKNG 579
           +  L+  L    +   L +++    IL     L+A++ + R  +   + ++TL++ +K+ 
Sbjct: 216 LAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH 275

Query: 580 TPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSKR 639
           +      A   L  L   N     A    G    L  +           + + L+++   
Sbjct: 276 SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 335

Query: 640 E 640
            
Sbjct: 336 R 336

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  142 bits (360), Expect = 1e-37
 Identities = 42/215 (19%), Positives = 92/215 (42%), Gaps = 13/215 (6%)

Query: 363 ICSLIQNLSSSQLNIKRDSVMKIRMLS-KENPDNRILIANNGGIRPLVQLL-SYPDSKIQ 420
           + +L+  L S   ++++     +R LS + + +++  +   G ++ L++           
Sbjct: 129 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTL 188

Query: 421 EHTVTALLNLS-LDETNKRHIARE-GAIPAIIEIL----QNGTNEARENSAAALFSLSML 474
           +  ++AL NLS     NK  I    GA+  ++  L    Q  T    E+    L ++S L
Sbjct: 189 KSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSL 248

Query: 475 ----DENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLS-INQSNKSRAIKAGIIP 529
               +++R ++   N +  L+  L+  S+    +A   L+NLS  N  ++      G + 
Sbjct: 249 IATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVS 308

Query: 530 SLLKLLEDKALGMVDEALSILQLLASHPEGRNEIG 564
            L  L+  K   +   + + L+ L ++   + +  
Sbjct: 309 MLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKDA 343

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  121 bits (304), Expect = 3e-30
 Identities = 52/271 (19%), Positives = 99/271 (36%), Gaps = 25/271 (9%)

Query: 392 NPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIE 451
                   A+  G+      +  P        V  L+ LS DE ++  +   G + AI E
Sbjct: 21  ETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAE 80

Query: 452 ILQNGTN-----------EARENSAAALFSLSMLD-ENRVMVGNLNG-IPPLVNLLRYGS 498
           +LQ                 R  +  AL +L+  D  N+  + ++ G +  LV  L+  S
Sbjct: 81  LLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSES 140

Query: 499 IRGKKDAATALFNLSINQSNKSRAI--KAGIIPSLLKLLED-KALGMVDEALSILQLLAS 555
              ++  A+ L NLS      S+    + G + +L++   + K    +   LS L  L++
Sbjct: 141 EDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSA 200

Query: 556 H-PEGRNEIGRLS-FIETLVEII----KNGTPKNKECATSVLLELGL---NNSYFILAAL 606
           H  E + +I  +   +  LV  +    +  T    E    +L  +      N        
Sbjct: 201 HCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILR 260

Query: 607 QYGVYEHLVEITRCGTNRGQRKANSLLQHMS 637
           +    + L++  +  +      A   L ++S
Sbjct: 261 ENNCLQTLLQHLKSHSLTIVSNACGTLWNLS 291

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  114 bits (287), Expect = 6e-28
 Identities = 38/218 (17%), Positives = 82/218 (37%), Gaps = 27/218 (12%)

Query: 327 ALRNLIVQWCEKNNVELPKKDTNTGSDASSAALIEEICSLIQNLSSSQLNIKRDSVMKIR 386
            LRNL  +    +   L                ++ +      L   + +  +  +  + 
Sbjct: 150 VLRNLSWRADVNSKKTL-----------REVGSVKALMECA--LEVKKESTLKSVLSALW 196

Query: 387 MLSKENPDNRILIAN-NGGIRPLVQLLSYPDS----KIQEHTVTALLNLSL----DETNK 437
            LS    +N+  I   +G +  LV  L+Y        I E     L N+S     +E ++
Sbjct: 197 NLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHR 256

Query: 438 RHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLD-ENRVMVGNLNGIPPLVNLLRY 496
           + +     +  +++ L++ +     N+   L++LS  + +++  + ++  +  L NL+  
Sbjct: 257 QILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHS 316

Query: 497 GSIRGKKDAATALFNLSINQSNKSRA----IKAGIIPS 530
                   +A AL NL  N+  K +          +PS
Sbjct: 317 KHKMIAMGSAAALRNLMANRPAKYKDANIMSPGSSLPS 354

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  177 bits (450), Expect = 6e-48
 Identities = 44/277 (15%), Positives = 106/277 (38%), Gaps = 7/277 (2%)

Query: 366 LIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYP-DSKIQEHTV 424
           L + L+     +   + + +  LSK+      ++ +   +  +V+ +    D +    T 
Sbjct: 19  LTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTA 78

Query: 425 TALLNLSLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDEN-RVMVGN 483
             L NLS        I + G IPA++++L +  +     +   L +L +  E  ++ V  
Sbjct: 79  GTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRL 138

Query: 484 LNGIPPLVNLLRYGSIRGKKDAATALFNLS-INQSNKSRAIKAGIIPSLLKLLEDK-ALG 541
             G+  +V LL   +++        L  L+  NQ +K   + +G   +L+ ++       
Sbjct: 139 AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEK 198

Query: 542 MVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYF 601
           ++     +L++L+     +  I     ++ L   + + + +  +     L  L    +  
Sbjct: 199 LLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ 258

Query: 602 ILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK 638
                  G+   LV++           A  +L +++ 
Sbjct: 259 EGME---GLLGTLVQLLGSDDINVVTCAAGILSNLTC 292

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  160 bits (407), Expect = 4e-42
 Identities = 58/302 (19%), Positives = 118/302 (39%), Gaps = 12/302 (3%)

Query: 351 GSDASSAALIEE--ICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPL 408
             + +  A+     +  ++  L+ + +     +   +++L+  N +++++I  +GG + L
Sbjct: 128 HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQAL 187

Query: 409 VQLL-SYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAA 467
           V ++ +Y   K+   T   L  LS+  +NK  I   G + A+   L + +    +N    
Sbjct: 188 VNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT 247

Query: 468 LFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSI-NQSNKSRAIKAG 526
           L +LS  D      G    +  LV LL    I     AA  L NL+  N  NK    + G
Sbjct: 248 LRNLS--DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVG 305

Query: 527 IIPSLLKLLEDK--ALGMVDEALSILQLLASHPE----GRNEIGRLSFIETLVEIIKNGT 580
            I +L++ +        + + A+  L+ L S  +     +N +     +  +V+++   +
Sbjct: 306 GIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPS 365

Query: 581 PKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSKRE 640
                 AT  L+              + G    LV++        QR+ +         E
Sbjct: 366 HWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVE 425

Query: 641 HI 642
            +
Sbjct: 426 GV 427

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  156 bits (395), Expect = 1e-40
 Identities = 58/313 (18%), Positives = 109/313 (34%), Gaps = 34/313 (10%)

Query: 352 SDASSAALIEE--ICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLV 409
           SDA++     E  + +L+Q L S  +N+   +   +  L+  N  N++++   GGI  LV
Sbjct: 252 SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALV 311

Query: 410 QLL--SYPDSKIQEHTVTALLNLSLD----ETNKRHIAREGAIPAIIEILQNGTNEAREN 463
           + +  +     I E  + AL +L+      E  +  +     +P ++++L   ++     
Sbjct: 312 RTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIK 371

Query: 464 SAAALFS-LSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAAT--------------- 507
           +   L   L++   N   +     IP LV LL       ++  +                
Sbjct: 372 ATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEE 431

Query: 508 -------ALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGR 560
                  AL  L+ +  N+        IP  ++LL      +   A  +L  LA   E  
Sbjct: 432 IVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAA 491

Query: 561 NEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRC 620
             I        L E++ +        A +VL  +  +        L     E    + R 
Sbjct: 492 EAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRL---SVELTSSLFRT 548

Query: 621 GTNRGQRKANSLL 633
                   A+  L
Sbjct: 549 EPMAWNETADLGL 561

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  146 bits (370), Expect = 3e-37
 Identities = 57/244 (23%), Positives = 98/244 (40%), Gaps = 4/244 (1%)

Query: 399 IANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIARE-GAIPAIIEILQNGT 457
                 I  L +LL+  D  +       +  LS  E ++  I R    + AI+  +QN  
Sbjct: 10  ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN 69

Query: 458 N-EARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQ 516
           + E    +A  L +LS   E  + +    GIP LV +L          A T L NL ++Q
Sbjct: 70  DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ 129

Query: 517 SNKSRAI-KAGIIPSLLKLLEDKALGMVDEALSILQLLA-SHPEGRNEIGRLSFIETLVE 574
                A+  AG +  ++ LL    +  +      LQ+LA  + E +  I      + LV 
Sbjct: 130 EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVN 189

Query: 575 IIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQ 634
           I++  T +     TS +L++    S    A ++ G  + L       + R  +     L+
Sbjct: 190 IMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLR 249

Query: 635 HMSK 638
           ++S 
Sbjct: 250 NLSD 253

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  118 bits (298), Expect = 4e-28
 Identities = 39/220 (17%), Positives = 67/220 (30%), Gaps = 25/220 (11%)

Query: 366 LIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQ----- 420
           +++ L          + + +       P N   +   G I  LVQLL       Q     
Sbjct: 357 VVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSM 416

Query: 421 -----------------EHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTNEAREN 463
                            E    AL  L+ D  N+  I     IP  +++L +     +  
Sbjct: 417 GGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRV 476

Query: 464 SAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRA- 522
           +A  L  L+   E    +       PL  LL   +      AA  LF +S ++    +  
Sbjct: 477 AAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKR 536

Query: 523 IKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNE 562
           +   +  SL +   +         L +       P G  +
Sbjct: 537 LSVELTSSLFR--TEPMAWNETADLGLDIGAQGEPLGYRQ 574

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 87.3 bits (216), Expect = 5e-18
 Identities = 27/167 (16%), Positives = 62/167 (37%), Gaps = 2/167 (1%)

Query: 473 MLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIK-AGIIPSL 531
           +++           IP L  LL          AA  +  LS  ++++   ++   ++ ++
Sbjct: 2   LINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAI 61

Query: 532 LKLLED-KALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSV 590
           ++ +++   +         L  L+ H EG   I +   I  LV+++ +        A + 
Sbjct: 62  VRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITT 121

Query: 591 LLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMS 637
           L  L L+     +A    G  + +V +      +        LQ ++
Sbjct: 122 LHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 168

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Length = 78

 Score =  150 bits (380), Expect = 1e-43
 Identities = 44/74 (59%), Positives = 56/74 (75%)

Query: 269 VPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYAL 328
            P  F CP++LE+M DPVIV+TGQTYER SIQ+WL++ HKTCPK+ + L H  L PNY L
Sbjct: 5   FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVL 64

Query: 329 RNLIVQWCEKNNVE 342
           ++LI  WCE N +E
Sbjct: 65  KSLIALWCESNGIE 78

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  161 bits (409), Expect = 2e-43
 Identities = 51/297 (17%), Positives = 117/297 (39%), Gaps = 27/297 (9%)

Query: 367 IQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSY-----------P 415
              + +   +    +V  +  LS  + ++R  +   GG++ + +LL              
Sbjct: 154 KNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHY 212

Query: 416 DSKIQEHTVTALLNLSL-DETNKRHI-AREGAIPAIIEILQNGTNEARENSAAALFSLSM 473
              ++ +   AL NL+  D  NK  + + +G + A++  L++ + + ++  A+ L +LS 
Sbjct: 213 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSW 272

Query: 474 L--DENRVMVGNLNGIPPLVNLLRYGSIRG-KKDAATALFNLSI-NQSNKSRAIKA-GII 528
                ++  +  +  +  L+            K   +AL+NLS     NK+      G +
Sbjct: 273 RADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGAL 332

Query: 529 PSLLKLLEDKA----LGMVDEALSIL----QLLASHPEGRNEIGRLSFIETLVEIIKNGT 580
             L+  L  ++    L +++    IL     L+A++ + R  +   + ++TL++ +K+ +
Sbjct: 333 AFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS 392

Query: 581 PKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMS 637
                 A   L  L   N     A    G    L  +           + + L+++ 
Sbjct: 393 LTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLM 449

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  131 bits (330), Expect = 6e-33
 Identities = 42/207 (20%), Positives = 90/207 (43%), Gaps = 13/207 (6%)

Query: 363 ICSLIQNLSSSQLNIKRDSVMKIRMLS-KENPDNRILIANNGGIRPLVQLL-SYPDSKIQ 420
           + +L+  L S   ++++     +R LS + + +++  +   G ++ L++           
Sbjct: 245 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTL 304

Query: 421 EHTVTALLNLS-LDETNKRHIARE-GAIPAIIEIL----QNGTNEARENSAAALFSLSML 474
           +  ++AL NLS     NK  I    GA+  ++  L    Q  T    E+    L ++S L
Sbjct: 305 KSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSL 364

Query: 475 ----DENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLS-INQSNKSRAIKAGIIP 529
               +++R ++   N +  L+  L+  S+    +A   L+NLS  N  ++      G + 
Sbjct: 365 IATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVS 424

Query: 530 SLLKLLEDKALGMVDEALSILQLLASH 556
            L  L+  K   +   + + L+ L ++
Sbjct: 425 MLKNLIHSKHKMIAMGSAAALRNLMAN 451

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  118 bits (298), Expect = 9e-29
 Identities = 59/336 (17%), Positives = 121/336 (36%), Gaps = 27/336 (8%)

Query: 331 LIVQWCEKNNVELPKKDTNTGSDASSAALIEEICSLIQNLSSSQLNIKRDSVMKIR--ML 388
           L++Q    N+ +      + GS  + A     + ++I +    +   +   V+ +   + 
Sbjct: 74  LLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIR 133

Query: 389 SKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPA 448
           +          A+  G+      +  P        V  L+ LS DE ++  +   G + A
Sbjct: 134 AYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQA 193

Query: 449 IIEILQNGTN-----------EARENSAAALFSLSMLDEN--RVMVGNLNGIPPLVNLLR 495
           I E+LQ                 R  +  AL +L+  D      +      +  LV  L+
Sbjct: 194 IAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLK 253

Query: 496 YGSIRGKKDAATALFNLSI--NQSNKSRAIKAGIIPSLLKLLED-KALGMVDEALSILQL 552
             S   ++  A+ L NLS   + ++K    + G + +L++   + K    +   LS L  
Sbjct: 254 SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWN 313

Query: 553 LASH-PEGRNEIGRLS-FIETLVEIIKNGTPKN----KECATSVLLELG---LNNSYFIL 603
           L++H  E + +I  +   +  LV  +   +  N     E    +L  +      N     
Sbjct: 314 LSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQ 373

Query: 604 AALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSKR 639
              +    + L++  +  +      A   L ++S R
Sbjct: 374 ILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR 409

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  112 bits (282), Expect = 1e-26
 Identities = 36/205 (17%), Positives = 79/205 (38%), Gaps = 23/205 (11%)

Query: 327 ALRNLIVQWCEKNNVELPKKDTNTGSDASSAALIEEICSLIQNLSSSQLNIKRDSVMKIR 386
            LRNL  +    +   L                ++ +      L   + +  +  +  + 
Sbjct: 266 VLRNLSWRADVNSKKTL-----------REVGSVKALMECA--LEVKKESTLKSVLSALW 312

Query: 387 MLSKENPDNRILIAN-NGGIRPLVQLLSYPDS----KIQEHTVTALLNLS----LDETNK 437
            LS    +N+  I   +G +  LV  L+Y        I E     L N+S     +E ++
Sbjct: 313 NLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHR 372

Query: 438 RHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLD-ENRVMVGNLNGIPPLVNLLRY 496
           + +     +  +++ L++ +     N+   L++LS  + +++  + ++  +  L NL+  
Sbjct: 373 QILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHS 432

Query: 497 GSIRGKKDAATALFNLSINQSNKSR 521
                   +A AL NL  N+  K +
Sbjct: 433 KHKMIAMGSAAALRNLMANRPAKYK 457

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  105 bits (262), Expect = 4e-24
 Identities = 48/293 (16%), Positives = 101/293 (34%), Gaps = 57/293 (19%)

Query: 360 IEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPD--- 416
           +E + SL+  L +     K D    +  +S  + D+ I +  +G +  L+QLL   D   
Sbjct: 31  VEMVYSLLSMLGTHD---KDDMSRTLLAMSS-SQDSCISMRQSGCLPLLIQLLHGNDKDS 86

Query: 417 ---------SKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTN--------- 458
                     + +     AL N+   + + +   RE  +  ++E ++             
Sbjct: 87  VLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAH 146

Query: 459 ----------------EARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYG----- 497
                                +   L  LS  +E+R  +  L G+  +  LL+       
Sbjct: 147 EPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYG 206

Query: 498 ------SIRGKKDAATALFNLSINQSNKSRAI--KAGIIPSLLKLLEDKALGMVDEALSI 549
                 SI  ++ A  AL NL+         +    G + +L+  L+ ++  +     S+
Sbjct: 207 LTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASV 266

Query: 550 LQLLASH--PEGRNEIGRLSFIETLVEIIKNGT-PKNKECATSVLLELGLNNS 599
           L+ L+       +  +  +  ++ L+E           +   S L  L  + +
Sbjct: 267 LRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT 319

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 84.2 bits (208), Expect = 2e-17
 Identities = 41/273 (15%), Positives = 89/273 (32%), Gaps = 51/273 (18%)

Query: 408 LVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQ------------N 455
           +  LLS   +  ++     LL +S  + +   + + G +P +I++L              
Sbjct: 34  VYSLLSMLGTHDKDDMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSR 93

Query: 456 GTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLR-------------------- 495
           G+ EAR  ++AAL ++     +         +  L+  +R                    
Sbjct: 94  GSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQD 153

Query: 496 -----YGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLL-----------EDKA 539
                         A   L  LS ++ ++    + G + ++ +LL           +  +
Sbjct: 154 KNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYS 213

Query: 540 LGMVDEALSILQLLASH-PEGRNEIGRLS-FIETLVEIIKNGTPKNKECATSVLLELGLN 597
           + +   A   L  L       +  +  +   +  LV  +K+ +   ++   SVL  L   
Sbjct: 214 ITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWR 273

Query: 598 NSYFILAAL-QYGVYEHLVEITRCGTNRGQRKA 629
                   L + G  + L+E           K+
Sbjct: 274 ADVNSKKTLREVGSVKALMECALEVKKESTLKS 306

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  159 bits (403), Expect = 8e-43
 Identities = 51/278 (18%), Positives = 111/278 (39%), Gaps = 6/278 (2%)

Query: 366 LIQNLSSSQ-LNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTV 424
            ++ L   +   ++ +S   +  ++  N     ++   G +   ++LLS     +QE  V
Sbjct: 69  FVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAV 128

Query: 425 TALLNLSLDETNKRH-IAREGAIPAIIEILQNGTN-EARENSAAALFSLSMLDENRVMVG 482
            AL N++ D T  R  +     +P ++++           N+  AL +L           
Sbjct: 129 WALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFA 188

Query: 483 NLNG-IPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAI-KAGIIPSLLKLLEDKAL 540
            ++  +  L  LL         DA  AL  LS   ++K +A+  AG+   L++LL     
Sbjct: 189 KVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDY 248

Query: 541 GMVDEALSILQLLASH-PEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNS 599
            +V  AL  +  + +        I   S +++L+ ++ +     K+ A   +  +   N 
Sbjct: 249 KVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNR 308

Query: 600 YFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMS 637
             I   +   ++  L+ I +    R +++A   + + +
Sbjct: 309 AQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNAT 346

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  123 bits (311), Expect = 2e-30
 Identities = 57/272 (20%), Positives = 111/272 (40%), Gaps = 8/272 (2%)

Query: 366 LIQNLSSSQLNIKRDSVMKIR-MLSKE-NPDNRILIANNGGIRPLVQLLSYPDS-KIQEH 422
           +I+ + S     +  +  K R +LSKE NP    +I+  G +   V+ L   ++  +Q  
Sbjct: 25  MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 84

Query: 423 TVTALLNL-SLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDEN-RVM 480
           +   L N+ S +    R + + GA+P  IE+L +   + +E +  AL +++      R  
Sbjct: 85  SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 144

Query: 481 VGNLNGIPPLVNLLRYG-SIRGKKDAATALFNLSINQSNKSRAIK-AGIIPSLLKLLEDK 538
           V + N +PPL+ L      +   ++A  AL NL   +S      K +  +  L  LL   
Sbjct: 145 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 204

Query: 539 ALGMVDEALSILQLLASHP-EGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLN 597
              ++ +A   L  L+  P +    +        LVE++ +   K    A   +  +   
Sbjct: 205 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 264

Query: 598 NSYFILAALQYGVYEHLVEITRCGTNRGQRKA 629
           +       L     + L+ +        +++A
Sbjct: 265 DDIQTQVILNCSALQSLLHLLSSPKESIKKEA 296

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  113 bits (284), Expect = 6e-27
 Identities = 44/247 (17%), Positives = 83/247 (33%), Gaps = 8/247 (3%)

Query: 391 ENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETN---KRHIAREGAIP 447
              +N  +         +++++     + Q         L   E N      I+  G + 
Sbjct: 8   AQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVA 67

Query: 448 AIIEILQNGTNEARENSAAALFSL--SMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDA 505
             +E L+   N   +  +A + +   S       +V     +P  + LL       ++ A
Sbjct: 68  RFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQA 127

Query: 506 ATALFNLSI-NQSNKSRAIKAGIIPSLLKLL-EDKALGMVDEALSILQLLASHPEGRNEI 563
             AL N++  +   +   +   I+P LL+L  +   L M   A+  L  L        E 
Sbjct: 128 VWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEF 187

Query: 564 GRLS-FIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGT 622
            ++S  +  L  ++          A   L  L    +  I A +  GV   LVE+     
Sbjct: 188 AKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHND 247

Query: 623 NRGQRKA 629
            +    A
Sbjct: 248 YKVVSPA 254

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  107 bits (268), Expect = 6e-25
 Identities = 44/218 (20%), Positives = 92/218 (42%), Gaps = 4/218 (1%)

Query: 366 LIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVT 425
           L   L  S  ++  D+   +  LS    D    + + G  R LV+LL + D K+    + 
Sbjct: 197 LSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALR 256

Query: 426 ALLNLSL-DETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRV-MVGN 483
           A+ N+   D+   + I    A+ +++ +L +     ++ +   + +++  +  ++  V +
Sbjct: 257 AVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVID 316

Query: 484 LNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRA--IKAGIIPSLLKLLEDKALG 541
            N  P L+++L+    R +K+AA A+ N +   S +     ++ G I  L  LL      
Sbjct: 317 ANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSK 376

Query: 542 MVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNG 579
           +V  AL+ L+ +    E   +            I +  
Sbjct: 377 IVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAY 414

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  100 bits (251), Expect = 9e-23
 Identities = 37/195 (18%), Positives = 75/195 (38%), Gaps = 10/195 (5%)

Query: 366 LIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVT 425
           L++ L  +   +   ++  +  +   +     +I N   ++ L+ LLS P   I++    
Sbjct: 239 LVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACW 298

Query: 426 ALLNLSL-DETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSML--DENRVMVG 482
            + N++  +    + +      PA+I ILQ      R+ +A A+ + +     E    + 
Sbjct: 299 TISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLV 358

Query: 483 NLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGM 542
            L  I PL +LL     +  + A   L N+ +    +        I     L+E+     
Sbjct: 359 ELGCIKPLCDLLTVMDSKIVQVALNGLENI-LRLGEQEAKRNGTGINPYCALIEEA---- 413

Query: 543 VDEALSILQLLASHP 557
               L  ++ L SH 
Sbjct: 414 --YGLDKIEFLQSHE 426

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 73.4 bits (180), Expect = 7e-14
 Identities = 26/149 (17%), Positives = 63/149 (42%), Gaps = 5/149 (3%)

Query: 350 TGSDASSAALIEE--ICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRP 407
           TG D  +  ++    + SL+  LSS + +IK+++   I  ++  N      + +      
Sbjct: 263 TGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPA 322

Query: 408 LVQLLSYPDSKIQEHTVTALLNLSLDETNK--RHIAREGAIPAIIEILQNGTNEARENSA 465
           L+ +L   + + ++    A+ N +   + +  +++   G I  + ++L    ++  + + 
Sbjct: 323 LISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVAL 382

Query: 466 AALFSLSMLDENRVMVGNLNGIPPLVNLL 494
             L ++  L E         GI P   L+
Sbjct: 383 NGLENILRLGEQEAKRNG-TGINPYCALI 410

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 49.5 bits (118), Expect = 2e-06
 Identities = 29/134 (21%), Positives = 51/134 (38%), Gaps = 16/134 (11%)

Query: 350 TGSDASSAALIEE--ICSLIQNLSSSQLNIKRDSVMKIR-MLSKENPDNRILIANNGGIR 406
            G+ A    +I+     +LI  L +++   ++++   I    S  + +    +   G I+
Sbjct: 305 AGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIK 364

Query: 407 PLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAI------------IEILQ 454
           PL  LL+  DSKI +  +  L N+ L    +        I               IE LQ
Sbjct: 365 PLCDLLTVMDSKIVQVALNGLENI-LRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQ 423

Query: 455 NGTNEARENSAAAL 468
           +  N+     A  L
Sbjct: 424 SHENQEIYQKAFDL 437

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C Length = 179

 Score =  150 bits (379), Expect = 2e-42
 Identities = 36/174 (20%), Positives = 72/174 (41%), Gaps = 7/174 (4%)

Query: 167 TQDMELAMDMMVVFSKEDDRNADSAILERLAKKLELHTIADLKAETLAVRKLVKERGGHK 226
           TQ +    D+         +  +S   +R++++ ELH      A    +    KER    
Sbjct: 6   TQRLNFGDDIPSALRIAKKKRWNSIEEKRISQENELH------AYLSKLILAEKERELDD 59

Query: 227 ADSISQITDLLGKFKQIAGVEDTLVLD-GSVSARKLQRCQTMLVPHEFLCPVTLEIMTDP 285
               S  +   G   ++    D  ++D   + ++  ++ +   +P      ++ E+M +P
Sbjct: 60  RVKQSDDSQNGGDISKMKSKHDKYLMDMDELFSQVDEKRKKREIPDYLCGKISFELMREP 119

Query: 286 VIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLIVQWCEKN 339
            I  +G TY+R+ I+  L       P T   L    L PN A++ +I  + ++N
Sbjct: 120 CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQEN 173

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  140 bits (354), Expect = 8e-36
 Identities = 52/286 (18%), Positives = 111/286 (38%), Gaps = 10/286 (3%)

Query: 363 ICSLIQNLSSSQ-LNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQE 421
           I   +  L  +    I+ +S   +  ++    +    + + G I   + LL+ P + I E
Sbjct: 102 IPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISE 161

Query: 422 HTVTALLNLSLD-ETNKRHIAREGAIPAIIEILQNGTNEARENSAA--ALFSLSML---- 474
             V AL N++ D    +  + + GAI  ++ +L                 ++LS L    
Sbjct: 162 QAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK 221

Query: 475 DENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAI-KAGIIPSLLK 533
           +    +      +P LV LL +       D+  A+  L+   + +   + K G++P L+K
Sbjct: 222 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVK 281

Query: 534 LLEDKALGMVDEALSIL-QLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLL 592
           LL    L +V  AL  +  ++    E   ++     +     ++ N     ++ AT  + 
Sbjct: 282 LLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMS 341

Query: 593 ELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK 638
            +       I   + +G+   LV +      + Q++A   + + + 
Sbjct: 342 NITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTS 387

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  112 bits (280), Expect = 3e-26
 Identities = 50/305 (16%), Positives = 108/305 (35%), Gaps = 12/305 (3%)

Query: 337 EKNNVELPKKDTNTGSDASSAALIEE-ICSLIQNLSSSQLNIKRDSVMKIR-MLSKENPD 394
           +  ++     D       S+   +   +  +++ ++S+ L  +  +    R +LS+E   
Sbjct: 32  DSPDLGTDDDDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQP 91

Query: 395 NRILIANNGGIRPLVQLLSYPDS-KIQEHTVTALLNLSLDETNKRH-IAREGAIPAIIEI 452
               I   G I   V  L   D   IQ  +  AL N++   + +   +   GAIPA I +
Sbjct: 92  PIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISL 151

Query: 453 LQNGTNEARENSAAALFSLSM-LDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFN 511
           L +      E +  AL +++      R +V     I PL+ LL    +            
Sbjct: 152 LASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLT 211

Query: 512 LSINQSNKSRAIKA------GIIPSLLKLLEDKALGMVDEALSILQLLASHPEGR-NEIG 564
            +++   +++           I+P+L++LL      ++ ++   +  L   P  R   + 
Sbjct: 212 WTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVV 271

Query: 565 RLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNR 624
           +   +  LV+++          A   +  +           +  G       +       
Sbjct: 272 KKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTN 331

Query: 625 GQRKA 629
            Q++A
Sbjct: 332 IQKEA 336

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  107 bits (268), Expect = 9e-25
 Identities = 53/269 (19%), Positives = 91/269 (33%), Gaps = 17/269 (6%)

Query: 378 KRDSVMKIRMLSKENPD------NRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLS 431
                M    L  ++ D             N  +  +V+ ++  + + Q     A   L 
Sbjct: 26  FERQHMDSPDLGTDDDDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLL 85

Query: 432 LDETNK--RHIAREGAIPAIIEILQNGTN-EARENSAAALFSL-SMLDENRVMVGNLNGI 487
             E      +I R G IP  +  L        +  SA AL ++ S   E    V +   I
Sbjct: 86  SREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAI 145

Query: 488 PPLVNLLRYGSIRGKKDAATALFNLSI-NQSNKSRAIKAGIIPSLLKLL-----EDKALG 541
           P  ++LL        + A  AL N++    + +   IK G I  LL LL        A G
Sbjct: 146 PAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACG 205

Query: 542 MVDEALSILQLLASHPEGRNEIGRLS-FIETLVEIIKNGTPKNKECATSVLLELGLNNSY 600
            +      L  L  +      +  +   + TLV ++ +  P+    +   +  L    + 
Sbjct: 206 YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNE 265

Query: 601 FILAALQYGVYEHLVEITRCGTNRGQRKA 629
            I   ++ GV   LV++           A
Sbjct: 266 RIEMVVKKGVVPQLVKLLGATELPIVTPA 294

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  106 bits (266), Expect = 2e-24
 Identities = 44/220 (20%), Positives = 90/220 (40%), Gaps = 7/220 (3%)

Query: 366 LIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVT 425
           L++ L  +   +  DS   I  L+    +   ++   G +  LV+LL   +  I    + 
Sbjct: 237 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 296

Query: 426 ALLNLSL-DETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSL-SMLDENRVMVGN 483
           A+ N+    +   + +   GA+     +L N     ++ +   + ++ +   +    V N
Sbjct: 297 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVN 356

Query: 484 LNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRA--IKAGIIPSLLKLLEDKALG 541
              +P LV +L     + +K+AA A+ N +   + +     +  GII  L+ LL  K   
Sbjct: 357 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 416

Query: 542 MVDEALSILQLLASHPEGRNEIGRLS-FIETL--VEIIKN 578
           ++   L  +  +    E   E  +LS  IE    ++ I+ 
Sbjct: 417 IIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEA 456

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 93.2 bits (231), Expect = 3e-20
 Identities = 33/207 (15%), Positives = 87/207 (42%), Gaps = 10/207 (4%)

Query: 366 LIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVT 425
           L++ L +++L I   ++  I  +     +    + + G +     LL+ P + IQ+    
Sbjct: 279 LVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATW 338

Query: 426 ALLNL-SLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSML--DENRVMVG 482
            + N+ +  +   + +   G +P ++ +L     + ++ +A A+ + +     E  V + 
Sbjct: 339 TMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLV 398

Query: 483 NLNGIPPLVNLLRYGSIRGKKDAATALFNL-----SINQSNKSRA--IKAGIIPSLLKLL 535
           +   I PL+NLL     +  +    A+ N+      + ++ K      + G +  +  L 
Sbjct: 399 HCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQ 458

Query: 536 EDKALGMVDEALSILQLLASHPEGRNE 562
             +   +   +L++++   S  E  ++
Sbjct: 459 RHENESVYKASLNLIEKYFSVEEEEDQ 485

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  139 bits (352), Expect = 2e-35
 Identities = 55/299 (18%), Positives = 120/299 (40%), Gaps = 9/299 (3%)

Query: 350 TGSDASSAALIEE--ICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRP 407
           +G+ A +  +++   +   IQ L +  + +K  ++  +  ++ ++ D R  +     + P
Sbjct: 160 SGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEP 219

Query: 408 LVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIARE-GAIPAIIEILQNGTNEARENSAA 466
           ++ L +     +       L NL   +  +   +    A+P + +++ +   E   ++  
Sbjct: 220 ILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACW 279

Query: 467 ALFSLSMLDENRV-MVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSI-NQSNKSRAIK 524
           A+  LS   +  +  V ++     LV LL + S   +  A  A+ N+   N       I 
Sbjct: 280 AISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVIN 339

Query: 525 AGIIPSLLKLLEDKALGMVDEALSIL-QLLASHPEGRNEIGRLSFIETLVEIIKNGTPKN 583
           AG++P+L  LL      +  EA   +  + A + E    +   + I  LV++++    K 
Sbjct: 340 AGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKT 399

Query: 584 KECATSVLLEL---GLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSKR 639
           K+ A   +      GL     I   +  G  + L ++     NR        L+++ K 
Sbjct: 400 KKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKM 458

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  137 bits (345), Expect = 2e-34
 Identities = 57/315 (18%), Positives = 126/315 (40%), Gaps = 7/315 (2%)

Query: 329 RNLIVQWCEKNNVELPKKDTNTGSDASSAALIEEICSLIQNLSSSQLNIKRDSVMKIR-M 387
           RN I      ++ E  +   +      S  L +E+  + Q L+S  +  +  + +K R +
Sbjct: 56  RNFIPPTDGADSDEEDESSVSADQQFYSQ-LQQELPQMTQQLNSDDMQEQLSATVKFRQI 114

Query: 388 LSKENPDNRILIANNGGIRPLVQLLSYPDSK-IQEHTVTALLNL-SLDETNKRHIAREGA 445
           LS+E+     ++   G +  LV+ +     + +Q     AL N+ S      + +    A
Sbjct: 115 LSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADA 174

Query: 446 IPAIIEILQNGTNEARENSAAALFSLSM-LDENRVMVGNLNGIPPLVNLLRYGSIRGKKD 504
           +P  I++L  G+ E +E +  AL +++    + R  V   N + P++ L         + 
Sbjct: 175 VPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRT 234

Query: 505 AATALFNLSINQSNKSRAIK-AGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEI 563
           A   L NL   +  +      +  +P+L KL+       + +A   +  L+  P+   + 
Sbjct: 235 ATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQA 294

Query: 564 G-RLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGT 622
              +   + LVE++ + +   +  A   +  +   N       +  GV   L  +     
Sbjct: 295 VIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPK 354

Query: 623 NRGQRKANSLLQHMS 637
              +++A   + +++
Sbjct: 355 ENIKKEACWTISNIT 369

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  126 bits (317), Expect = 6e-31
 Identities = 40/282 (14%), Positives = 106/282 (37%), Gaps = 5/282 (1%)

Query: 363 ICSLIQNLSSSQ-LNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQE 421
           +  L++ +  +Q   ++ ++   +  ++        ++ +   +   +QLL     +++E
Sbjct: 132 VPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKE 191

Query: 422 HTVTALLNLSLD-ETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVM 480
             + AL N++ D    + ++ +  A+  I+ +  +        +   L +L    + +  
Sbjct: 192 QAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPD 251

Query: 481 VGNLNGI-PPLVNLLRYGSIRGKKDAATALFNLS-INQSNKSRAIKAGIIPSLLKLLEDK 538
              ++   P L  L+         DA  A+  LS   Q      I   I   L++LL  +
Sbjct: 252 WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHE 311

Query: 539 ALGMVDEALSILQLLASH-PEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLN 597
           +  +   AL  +  + +        +     +  L  ++ +     K+ A   +  +   
Sbjct: 312 STLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAG 371

Query: 598 NSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSKR 639
           N+  I A +   +   LV++      + +++A   + + S  
Sbjct: 372 NTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSG 413

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  102 bits (256), Expect = 4e-23
 Identities = 50/220 (22%), Positives = 93/220 (42%), Gaps = 6/220 (2%)

Query: 366 LIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVT 425
           L + + S       D+   I  LS    +    + +    + LV+LLS+  + +Q   + 
Sbjct: 262 LAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALR 321

Query: 426 ALLNL-SLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLD-ENRVMVGN 483
           A+ N+ + ++   + +   G +PA+  +L +     ++ +   + +++  + E    V +
Sbjct: 322 AVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVID 381

Query: 484 LNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKA----GIIPSLLKLLEDKA 539
            N IPPLV LL     + KK+A  A+ N S     +   I+     G I  L  LLE   
Sbjct: 382 ANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIAD 441

Query: 540 LGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNG 579
             +++  L  L+ +    E   E   L+  E    I K G
Sbjct: 442 NRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAG 481

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 85.5 bits (211), Expect = 1e-17
 Identities = 30/197 (15%), Positives = 71/197 (36%), Gaps = 12/197 (6%)

Query: 366 LIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVT 425
           L++ LS     ++  ++  +  +   N     ++ N G +  L  LLS P   I++    
Sbjct: 304 LVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACW 363

Query: 426 ALLNLSL-DETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENR----VM 480
            + N++  +    + +     IP ++++L+    + ++ +  A+ + S     R      
Sbjct: 364 TISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRY 423

Query: 481 VGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKAL 540
           + +   I PL +LL     R  +    AL N+         A    I  +   + +    
Sbjct: 424 LVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEK---- 479

Query: 541 GMVDEALSILQLLASHP 557
                 +  +     + 
Sbjct: 480 ---AGGMEKIFNCQQNE 493

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 62.3 bits (151), Expect = 2e-10
 Identities = 26/171 (15%), Positives = 65/171 (38%), Gaps = 4/171 (2%)

Query: 472 SMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSN--KSRAIKAGIIP 529
           S+  + +        +P +   L    ++ +  A      +   +        I+AG++P
Sbjct: 74  SVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVP 133

Query: 530 SLLKLL-EDKALGMVDEALSILQLLASH-PEGRNEIGRLSFIETLVEIIKNGTPKNKECA 587
            L++ + E++   +  EA   L  +AS        +     +   ++++  G+ + KE A
Sbjct: 134 RLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQA 193

Query: 588 TSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK 638
              L  +  +++ +    LQ    E ++ +         R A   L ++ +
Sbjct: 194 IWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCR 244

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 47.3 bits (112), Expect = 1e-05
 Identities = 33/135 (24%), Positives = 58/135 (42%), Gaps = 17/135 (12%)

Query: 351 GSDASSAALIEE--ICSLIQNLSSSQLNIKRDSVMKIRMLSK---ENPDNRILIANNGGI 405
           G+     A+I+   I  L++ L  ++   K+++   I   S    + PD    + + G I
Sbjct: 371 GNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCI 430

Query: 406 RPLVQLLSYPDSKIQEHTVTALLN-LSLDETNKRH-----------IAREGAIPAIIEIL 453
           +PL  LL   D++I E T+ AL N L + E +K             I + G +  I    
Sbjct: 431 KPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQ 490

Query: 454 QNGTNEARENSAAAL 468
           QN  ++  E +   +
Sbjct: 491 QNENDKIYEKAYKII 505

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =  128 bits (321), Expect = 7e-32
 Identities = 53/297 (17%), Positives = 99/297 (33%), Gaps = 26/297 (8%)

Query: 366 LIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVT 425
            +Q LSS     +      I+    ++   +  +   GGI  LV LL  P+  +Q+    
Sbjct: 7   AVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAG 66

Query: 426 ALLNLSL-DETNKRHIAREGAIPAIIEIL-QNGTNEARENSAAALFSLSMLDENRVMVGN 483
           AL NL     TNK    R+  I   + +L + G  E ++     L++LS  DE +  +  
Sbjct: 67  ALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA 126

Query: 484 LNGIPPLVNLLRYGSIRG----------------KKDAATALFNLSINQSNKSRAIK-AG 526
            + +P L + +                         +A   L NLS   + +      +G
Sbjct: 127 -DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSG 185

Query: 527 IIPSLLKLLEDKALGMVDEALSILQLLAS-HPEGRNEIGRLSFIETLVEIIKNGTPKNKE 585
           +I SL+  +++       +  S+   +   H         +      +E         K 
Sbjct: 186 LIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKS 245

Query: 586 CAT--SVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSKRE 640
                S   +  +NN+Y      +    +    +         R   +L+    K  
Sbjct: 246 STGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHS---DAIRTYLNLMGKSKKDA 299

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =  104 bits (261), Expect = 4e-24
 Identities = 58/317 (18%), Positives = 110/317 (34%), Gaps = 43/317 (13%)

Query: 363 ICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLL-SYPDSKIQE 421
           IC L+  L S   N+++ +   +R L   +  N++      GIR  V LL    +++IQ+
Sbjct: 46  ICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQK 105

Query: 422 HTVTALLNLSLDETNKRHIAREGAIPAIIEIL----------------QNGTNEARENSA 465
                L NLS  +  K  +    A+P + + +                +    E   N+ 
Sbjct: 106 QLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNAT 164

Query: 466 AALFSLSMLDENRVMVGNLNG-IPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIK 524
             L +LS  D  R  + N +G I  L+  ++      + D   ++ N      N S  + 
Sbjct: 165 GCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDK-SVENCMCVLHNLSYRLD 223

Query: 525 AGIIPSLLKLLEDKALGMVDEA-----------------LSILQLLASHPEGRNEIGRLS 567
           A +     +L  +      +++                    L    ++P+G   +    
Sbjct: 224 AEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSD 283

Query: 568 FIETLVEIIKNGT-PKNKECATSVLLELGLNNSYF-----ILAALQYGVYEHLVEITRCG 621
            I T + ++         E     L  L  +          L  L+      +  + + G
Sbjct: 284 AIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSG 343

Query: 622 TNRGQRKANSLLQHMSK 638
            +   R   SLL +MS+
Sbjct: 344 NSDVVRSGASLLSNMSR 360

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =  104 bits (259), Expect = 6e-24
 Identities = 50/212 (23%), Positives = 87/212 (41%), Gaps = 21/212 (9%)

Query: 405 IRPLVQLLSYPDSKIQEHTVTALLNLSL-DETNKRHIAREGAIPAIIEILQNGTNEAREN 463
           I   VQ LS  D K Q      + +    DE+ K+ + + G I  ++++L++     ++ 
Sbjct: 4   IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63

Query: 464 SAAALFSLSML-DENRVMVGNLNGIPPLVNLLRY-GSIRGKKDAATALFNLSINQSNKSR 521
           +A AL +L      N++     NGI   V+LLR  G+   +K     L+NLS     K  
Sbjct: 64  AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELK-E 122

Query: 522 AIKAGIIPSLLKLLEDKALGMVDE----------------ALSILQLLASHPEGRNEIGR 565
            + A  +P L   +     G  D                 A   L+ L+S   GR  +  
Sbjct: 123 ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRN 182

Query: 566 LS-FIETLVEIIKNGTPKNKECATSVLLELGL 596
            S  I++L+  ++N    ++    SV   + +
Sbjct: 183 YSGLIDSLMAYVQNCVAASRCDDKSVENCMCV 214

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 87.2 bits (215), Expect = 2e-18
 Identities = 24/226 (10%), Positives = 67/226 (29%), Gaps = 24/226 (10%)

Query: 314 GQILDHLSLAPNYALRNLIVQWCEKNNVELPKKDTNTGSDASSAALIEEICSLIQN---- 369
                 L      A        C  N  +    +             +    L  +    
Sbjct: 227 PTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIR 286

Query: 370 -----LSSSQLNIKRDSV------MKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSK 418
                +  S+ +   ++       +        +  ++++     G+  + +LL   +S 
Sbjct: 287 TYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSD 346

Query: 419 IQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTN------EARENSAAALFSLS 472
           +     + L N+S      R +      P +  +L + T       +   ++   + +L 
Sbjct: 347 VVRSGASLLSNMSRHPLLHRVMG-NQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLM 405

Query: 473 MLD-ENRVMVGNLNGIPPLVNLLR-YGSIRGKKDAATALFNLSINQ 516
               +      + + +  ++NL R   S +  + A   L ++  ++
Sbjct: 406 ASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSK 451

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 79.5 bits (195), Expect = 7e-16
 Identities = 32/259 (12%), Positives = 74/259 (28%), Gaps = 22/259 (8%)

Query: 347 DTNTGSDASSAALIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIR 406
                +       +E    ++ NLS            ++   ++     +          
Sbjct: 195 QNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKS 254

Query: 407 PLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTNEA-RENSA 465
             +            +    L     +      +    AI   + ++     +A  E  A
Sbjct: 255 DKMM---------NNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACA 305

Query: 466 AALFSLSMLDEN------RVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNK 519
            AL +L+           +++     G+P +  LL+ G+    +  A+ L N+S +    
Sbjct: 306 GALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLH 365

Query: 520 SRAIKAGIIPSLLKLLEDKALGMVDE------ALSILQLLASHPEGRNEIGRLSFIETLV 573
                         L          E        ++  L+AS P+   +    S +  ++
Sbjct: 366 RVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNII 425

Query: 574 EIIKNGTPKNKECATSVLL 592
            + ++        A  +LL
Sbjct: 426 NLCRSSASPKAAEAARLLL 444

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 77.9 bits (191), Expect = 2e-15
 Identities = 37/290 (12%), Positives = 88/290 (30%), Gaps = 31/290 (10%)

Query: 377 IKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETN 436
           +  ++   +R LS  +   + +   +G I  L+  +    +  +    +    + +    
Sbjct: 159 VFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNL 218

Query: 437 KRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENR----------------VM 480
              +  E                  ++S     + S    N                   
Sbjct: 219 SYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGW 278

Query: 481 VGNLNGIPPLVNLLRYGSIRGKKDAAT-ALFNLSINQSNKSRAI------KAGIIPSLLK 533
           + + + I   +NL+         +A   AL NL+ ++   S  +      K   +P + +
Sbjct: 279 LYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIAR 338

Query: 534 LLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNK------ECA 587
           LL+     +V    S+L  ++ HP     +G       +  ++ + T            A
Sbjct: 339 LLQSGNSDVVRSGASLLSNMSRHPLLHRVMGN-QVFPEVTRLLTSHTGNTSNSEDILSSA 397

Query: 588 TSVLLELGLNNSYFILAALQYGVYEHLVEITRCG-TNRGQRKANSLLQHM 636
              +  L  +            +  +++ + R   + +    A  LL  M
Sbjct: 398 CYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDM 447

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} Length = 85

 Score =  116 bits (292), Expect = 2e-31
 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 269 VPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYAL 328
            P EF  P+   +MTDPV + +G   +R  I R L ++  T P   Q+L    L P   L
Sbjct: 11  APDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSP-TDPFNRQMLTESMLEPVPEL 69

Query: 329 RNLIVQWCEKNN 340
           +  I  W  +  
Sbjct: 70  KEQIQAWMREKQ 81

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  126 bits (317), Expect = 9e-31
 Identities = 52/337 (15%), Positives = 118/337 (35%), Gaps = 61/337 (18%)

Query: 362 EICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQE 421
           E+  +I  L      +K ++   ++ L   N   +  +    GI  LV LL +P  ++  
Sbjct: 49  ELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHL 108

Query: 422 HTVTALLNLSL--DETNKRHIAREGAIPAIIEILQNGTN-EARENSAAALFSLSMLDENR 478
               AL N+S   D+ NK  I     +PA++ +L+   + +  E     L++LS  D  +
Sbjct: 109 GACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIK 168

Query: 479 VMVGNLNGIPPLVNLL------------------RYGSIRGKKDAATALFNLSINQSNKS 520
           + + + + +  L + +                           + A  L N+S  +S   
Sbjct: 169 MEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEAR 227

Query: 521 RAIKA--GIIPSLLKLL------EDKALGMVDEALSILQLL------------------- 553
           R ++   G++ +L+ ++      +D    +V+  + +L+ L                   
Sbjct: 228 RKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAP 287

Query: 554 -------ASHPEGRNEIGRLSFIETLVEIIKNGT-PKNKECATSVLLELGLNNSYFILAA 605
                   S   G   + +   +   + ++K    P   E +   +  L      +    
Sbjct: 288 NVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYI 347

Query: 606 ----LQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK 638
                Q      + ++      R  + A+  L++++ 
Sbjct: 348 RSALRQEKALSAIADLLTNEHERVVKAASGALRNLAV 384

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  105 bits (263), Expect = 5e-24
 Identities = 34/181 (18%), Positives = 74/181 (40%), Gaps = 6/181 (3%)

Query: 359 LIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSK 418
           +I E     Q   +     +R S+  +  L K  P           +  ++ +L +    
Sbjct: 6   MIGEEVPSDQYYWAPLAQHERGSLASLDSLRKGGP--PPPNWRQPELPEVIAMLGFRLDA 63

Query: 419 IQEHTVTALLNLSL-DETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSML--D 475
           ++ +    L +L   ++  K  + +   IP ++ +L +   E    +  AL ++S     
Sbjct: 64  VKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQ 123

Query: 476 ENRVMVGNLNGIPPLVNLLRYG-SIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKL 534
           +N++ + N +G+P LV LLR    +   +     L+NLS + S K   +   +     ++
Sbjct: 124 DNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEV 183

Query: 535 L 535
           +
Sbjct: 184 I 184

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 96.6 bits (239), Expect = 5e-21
 Identities = 43/239 (17%), Positives = 80/239 (33%), Gaps = 18/239 (7%)

Query: 304 NSNHKTCPKTGQILDHLSLAPNYALRNLIVQWCEKNNVELPKKDTNTGSDASSAALIEEI 363
           +S+ K       +L +LS   +  +     ++ E          T+           E +
Sbjct: 252 DSDSKLVENCVCLLRNLSYQVHREIPQAE-RYQEAAPNVANNTGTSPARGYELLFQPEVV 310

Query: 364 CSLIQNLS-SSQLNIKRDSVMKIRMLSKEN----PDNRILIANNGGIRPLVQLLSYPDSK 418
              I  L  S    I   S   I+ L           R  +     +  +  LL+    +
Sbjct: 311 RIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHER 370

Query: 419 IQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTN--------EARENSAAALFS 470
           + +    AL NL++D  NK  I +  AIP +++ L  G          +   +    +  
Sbjct: 371 VVKAASGALRNLAVDARNKELIGK-HAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINE 429

Query: 471 LSMLD-ENRVMVGNLNGIPPLVNLLRYG--SIRGKKDAATALFNLSINQSNKSRAIKAG 526
           +   + E    +    GI  LV + + G  S +  + AA  L  +   +  +    K G
Sbjct: 430 VIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPLEKEG 488

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 93.9 bits (232), Expect = 3e-20
 Identities = 58/288 (20%), Positives = 99/288 (34%), Gaps = 51/288 (17%)

Query: 357 AALIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNR-ILIANNGGIRPLVQLLS-- 413
           +    E     +       ++  ++   +R +S E  + R  L   +G +  L+ ++   
Sbjct: 188 SGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAE 247

Query: 414 ----YPDSKIQEHTVTALLNLSL--------------------------DETNKRHIARE 443
                 DSK+ E+ V  L NLS                                  + + 
Sbjct: 248 IGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQP 307

Query: 444 GAIPAIIEILQNGTNEA-RENSAAALFSLS-----MLDENRVMVGNLNGIPPLVNLLRYG 497
             +   I +L+     A  E SA A+ +L           R  +     +  + +LL   
Sbjct: 308 EVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNE 367

Query: 498 SIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALS--------- 548
             R  K A+ AL NL+++  NK   I    IP+L+K L                      
Sbjct: 368 HERVVKAASGALRNLAVDARNK-ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNT 426

Query: 549 ILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKEC--ATSVLLEL 594
           I +++A + E   ++     IE LV I K+G    KE   A  VL  +
Sbjct: 427 INEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTI 474

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 46.5 bits (109), Expect = 2e-05
 Identities = 23/158 (14%), Positives = 52/158 (32%), Gaps = 20/158 (12%)

Query: 322 LAPNYALRNLIVQWCEKNNVELPKKDTNTGSDASSAALIEEICSLIQNLSSSQLNIKRDS 381
           LA +   + LI +    N V+         S   S   +  I + I  + +         
Sbjct: 382 LAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAE-------- 433

Query: 382 VMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDS--KIQEHTVTALLNLSLDETNKRH 439
                     N +    +    GI  LV +    +   K        L  +   +  ++ 
Sbjct: 434 ----------NLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKP 483

Query: 440 IAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDEN 477
           + +EG   +  ++  N  + ++ + +    +L ++D N
Sbjct: 484 LEKEGWKKSDFQVNLNNASRSQSSHSYDDSTLPLIDRN 521

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Length = 100

 Score =  114 bits (287), Expect = 2e-30
 Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 269 VPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYAL 328
            P EF  P+   +MTDPV + +G   +R  I R L ++  T P   Q L    L P   L
Sbjct: 26  APDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSP-TDPFNRQTLTESMLEPVPEL 84

Query: 329 RNLIVQWCEKNN 340
           +  I  W  +  
Sbjct: 85  KEQIQAWMREKQ 96

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score =  113 bits (285), Expect = 7e-29
 Identities = 42/234 (17%), Positives = 87/234 (37%), Gaps = 28/234 (11%)

Query: 351 GSDASSAALIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQ 410
           GS+A     +E   S+++       +    +   I+    +  + R  +    GI  L+Q
Sbjct: 1   GSNADMEMTLERAVSMLEA-DHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQ 59

Query: 411 LLSYPDSKIQEHTVTALLNLSL-DETNKRHIAREGAIPAIIEILQNGTN-EARENSAAAL 468
           LL   +  +Q     AL NL   D  NK  +A    +P ++++L+   + E ++     L
Sbjct: 60  LLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLL 119

Query: 469 FSLSMLDENRVMVGNLNGIPPLVNLL----------------RYGSIRGKKDAATALFNL 512
           ++LS  D+ + ++     +  L   +                         +    L N+
Sbjct: 120 WNLSSNDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNM 178

Query: 513 SINQSNKSRAIKA--GIIPSLLKLL------EDKALGMVDEALSILQLLASHPE 558
           S   ++  +A++   G+I SL+  +              +  + IL  L+   E
Sbjct: 179 SSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQLE 232

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 95.8 bits (238), Expect = 2e-22
 Identities = 33/208 (15%), Positives = 76/208 (36%), Gaps = 22/208 (10%)

Query: 405 IRPLVQLLSYPDS--KIQEHTVTALLNLSL-DETNKRHIAREGAIPAIIEILQNGTNEAR 461
           +   V +L              T + +        ++ + +   I  ++++L+    + +
Sbjct: 10  LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQ 69

Query: 462 ENSAAALFSLSML-DENRVMVGNLNGIPPLVNLLRYG-SIRGKKDAATALFNLSINQSNK 519
                AL +L    ++N++ V  LNG+P L+ +L+    +  KK     L+NLS N   K
Sbjct: 70  RAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK 129

Query: 520 SRAIKAGIIPSLLKLL---------------EDKALGMVDEALSILQLLASH-PEGRNEI 563
           +  I   ++     ++                     +       L+ ++S   +GR  +
Sbjct: 130 NLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAM 189

Query: 564 GRLS-FIETLVEIIKNGTPKNKECATSV 590
            R    I++LV  ++      +    + 
Sbjct: 190 RRCDGLIDSLVHYVRGTIADYQPDDKAT 217

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 41.9 bits (98), Expect = 3e-04
 Identities = 18/126 (14%), Positives = 46/126 (36%), Gaps = 4/126 (3%)

Query: 520 SRAIKAGIIPSLLKLL--EDKALGMVDEALSILQLLASH-PEGRNEIGRLSFIETLVEII 576
           S A     +   + +L  +      +  A + +Q       E R  + +L  I  L++++
Sbjct: 2   SNADMEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLL 61

Query: 577 KNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRG-QRKANSLLQH 635
           K      +      L  L   ++   L   +      L+++ +   +   +++   LL +
Sbjct: 62  KVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWN 121

Query: 636 MSKREH 641
           +S  + 
Sbjct: 122 LSSNDK 127

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 Length = 98

 Score =  107 bits (268), Expect = 4e-28
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 269 VPHEFLCPVTLEIMTDPVIVATGQ-TYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYA 327
              EFL P+   +M DPV++ + + T +R +I R L S+  T P     L    + PN  
Sbjct: 19  ACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQ-TDPFNRSPLTMDQIRPNTE 77

Query: 328 LRNLIVQWCEKN 339
           L+  I +W  + 
Sbjct: 78  LKEKIQRWLAER 89

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  110 bits (276), Expect = 2e-25
 Identities = 55/320 (17%), Positives = 99/320 (30%), Gaps = 38/320 (11%)

Query: 360 IEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKI 419
           + E C           +I+R +   +  L+ +      LI +   I  L+ L    +   
Sbjct: 378 LAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSC 437

Query: 420 QEHTVTALLNLS---------------------------------LDETNKRHIAREGAI 446
               VT  +NL                                          +A EG  
Sbjct: 438 LYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGIT 497

Query: 447 PAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAA 506
            A+  + +  ++ ++E  A  L ++  L E R  V    G+  L+ +   G+ +GK+ A 
Sbjct: 498 TALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHAT 557

Query: 507 TALFNLSINQSNK---SRAIKAGIIPSLLKLLE-DKALGMVDEALSILQLLASHPEG-RN 561
            AL  + I  + +   S      +I  LL LL+ D       E+L  L  LAS  E  R 
Sbjct: 558 QALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQ 617

Query: 562 EIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCG 621
            I +   +  +   +          A   L  L ++     +        + L  +    
Sbjct: 618 RIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDE 677

Query: 622 TNRGQRKANSLLQHMSKREH 641
                      L  ++    
Sbjct: 678 DEETATACAGALAIITSVSV 697

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 63.7 bits (154), Expect = 1e-10
 Identities = 35/254 (13%), Positives = 72/254 (28%), Gaps = 17/254 (6%)

Query: 357 AALIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQ-----L 411
             L++    L      S ++I   S     +      +N             +       
Sbjct: 196 CRLLDVCSELEDYKYESAMDITGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDK 255

Query: 412 LSYPDSKIQEHTVTALLNL--SLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALF 469
           L  PD + +     A+  L     +   + +AREG +  I+ +        +  +   L 
Sbjct: 256 LLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLI 315

Query: 470 SLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSN--KSRAIKAGI 527
           + S   +    +    G+  L  L    +   +  A   L  L          R    G 
Sbjct: 316 AASSKKDKAKALCE-QGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGA 374

Query: 528 IPSLLKLLEDKALG------MVDEALSILQLLASHPEGRNEIGR-LSFIETLVEIIKNGT 580
              L +      +       +   A   L  L    E + ++    + I  L+++ + G 
Sbjct: 375 ALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGN 434

Query: 581 PKNKECATSVLLEL 594
                   +  + L
Sbjct: 435 QSCLYGVVTTFVNL 448

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 61.0 bits (147), Expect = 8e-10
 Identities = 16/128 (12%), Positives = 43/128 (33%), Gaps = 2/128 (1%)

Query: 366 LIQNLSSSQLNIKRDSVMKIRMLSKENPD-NRILIANNGGIRPLVQLLSYPDSKIQEHTV 424
           L                  + +++  +      ++A    +  L  L++ P   +Q   +
Sbjct: 670 LALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGI 729

Query: 425 TALLNL-SLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGN 483
             +LN+ +  E   + +     +  +  + Q   +   +    A   L+  +  R++  +
Sbjct: 730 VIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRIIERS 789

Query: 484 LNGIPPLV 491
            N   P V
Sbjct: 790 DNAEIPDV 797

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A Length = 968

 Score =  107 bits (267), Expect = 3e-24
 Identities = 32/136 (23%), Positives = 55/136 (40%), Gaps = 14/136 (10%)

Query: 214 AVRKLVKERGGHKADSISQITDLLGKFKQIAGVEDTLVLDGSVSARKLQRCQTMLVPHEF 273
           AV  L ++ G    + I ++ +   K ++    ++   L+               VP EF
Sbjct: 845 AVDILGRKTGLASPEFIEKLLNFANKAEEQRKADEEEDLEYGD------------VPDEF 892

Query: 274 LCPVTLEIMTDPVIVAT-GQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLI 332
           L P+   IM DPVI+       +R +I+  L  +  T P     L    + PN  LR  I
Sbjct: 893 LDPLMYTIMKDPVILPASKMNIDRSTIKAHL-LSDSTDPFNRMPLKLEDVTPNEELRQKI 951

Query: 333 VQWCEKNNVELPKKDT 348
           + + ++   E   K +
Sbjct: 952 LCFKKQKKEEAKHKAS 967

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 85.0 bits (210), Expect = 3e-20
 Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 9/89 (10%)

Query: 270 PHEFLCPVTLEIMTDPVIVAT-GQTYERESIQRWLNSNHK-----TCPKTG---QILDHL 320
              F CP+T E M  PV     G TYE ++I R + S  K      CP+ G     +   
Sbjct: 5   SSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKS 64

Query: 321 SLAPNYALRNLIVQWCEKNNVELPKKDTN 349
            L  + ALR  I    +K +       ++
Sbjct: 65  DLIQDEALRRAIENHNKKRHRHSESGPSS 93

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 90.5 bits (224), Expect = 4e-20
 Identities = 36/226 (15%), Positives = 77/226 (34%), Gaps = 9/226 (3%)

Query: 361 EEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLV-QLLSYPDSKI 419
               +  +   ++    +  ++  +  L  EN DN        G+  LV + L    + +
Sbjct: 40  PMPPTAGEAEQAADQQEREGALELLADLC-ENMDNAADFCQLSGMHLLVGRYLEAGAAGL 98

Query: 420 QEHTVTALLNL-SLDETNKRHIAREGAIPAIIEILQNGTN-EARENSAAALFSLSM-LDE 476
           +      +          +  +   GA+  ++ +L        R  +  A+  L    + 
Sbjct: 99  RWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEA 158

Query: 477 NRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQ-SNKSRAIKAGIIPSLLKLL 535
             +    L+G   L+  ++    + K  +A  L NL +    +K      G++  L+ L+
Sbjct: 159 GLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALV 218

Query: 536 EDKALGMVDEALSILQLLASH-PEGRNEIGR--LSFIETLVEIIKN 578
             +     +  L  L  L +  P+G  E     L   E L    + 
Sbjct: 219 RTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQL 264

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 67.4 bits (164), Expect = 2e-12
 Identities = 41/211 (19%), Positives = 74/211 (35%), Gaps = 6/211 (2%)

Query: 434 ETNKRHIA--REGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLV 491
           E  K  +    +   P   E  Q    + RE +   L  L    +N      L+G+  LV
Sbjct: 28  EQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLV 87

Query: 492 N-LLRYGSIRGKKDAATALFNL-SINQSNKSRAIKAGIIPSLLKLLE-DKALGMVDEALS 548
              L  G+   +  AA  +        + + + +  G +  LL+LL+ D    +  +AL 
Sbjct: 88  GRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALF 147

Query: 549 -ILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQ 607
            I  L+     G  +  RL     L+  ++    K K  +  +L  L + +         
Sbjct: 148 AISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCS 207

Query: 608 YGVYEHLVEITRCGTNRGQRKANSLLQHMSK 638
            G+ + LV + R   +         L  +  
Sbjct: 208 MGMVQQLVALVRTEHSPFHEHVLGALCSLVT 238

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Length = 267

 Score = 84.6 bits (208), Expect = 2e-18
 Identities = 36/240 (15%), Positives = 85/240 (35%), Gaps = 15/240 (6%)

Query: 115 SEAVMSRFHAVYDKLYEALDDVPYDELGISDEVKEQVELMRMQLQRAKGRTDTQDMELAM 174
           S      +  + + + + +D      +GI ++V +     +  L   +  +++ D  +  
Sbjct: 31  SNIYQQCYKQIDETINQLVDSTSPSTIGIEEQVADITSTYK-LLSTYESESNSFDEHIKD 89

Query: 175 DMMVVFSKEDDRNADSAILERLAKKLELHTIADLKAETLAVRKLVKERGGHKADSISQIT 234
                  K++ + +  A  +      + +   +L A  L   +L       +  ++   T
Sbjct: 90  L------KKNFKQSSDACPQIDLSTWDKYRTGELTAPKL--SELYLNMPTPEPATMVNNT 141

Query: 235 DLLGKFKQIAGV--EDTLVLDGSVSARKLQRCQTMLVPHEFLCPVTLEIMTDPVIVAT-G 291
           D L   K +  +  + T V+    +       Q      E  CP+T +    P+I     
Sbjct: 142 DTLKILKVLPYIWNDPTCVIPDLQNPADEDDLQIEGGKIELTCPITCKPYEAPLISRKCN 201

Query: 292 QTYERESIQRWL-NSNHKTCPKTG--QILDHLSLAPNYALRNLIVQWCEKNNVELPKKDT 348
             ++R+ IQ +L     + CP+    Q++       +  +         K + E  K+ +
Sbjct: 202 HVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMKESQEQDKRSS 261

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 83.4 bits (206), Expect = 6e-18
 Identities = 35/182 (19%), Positives = 70/182 (38%), Gaps = 1/182 (0%)

Query: 158 LQRAKGRTDTQDMELAMDMMVVFSKEDDRNADSAILERLAKKLELHTIADLKAETLAVRK 217
           LQRA      Q +    D+         +  +S    R+ ++ ELH+           R+
Sbjct: 95  LQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERE 154

Query: 218 LVKERGGHKADSISQITDLLGKFKQIAGVEDTLVLDGSVSARKLQRCQTMLVPHEFLCPV 277
           L + +  H+               +    +    +D  + ++  ++ +   +P      +
Sbjct: 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMD-ELFSQVDEKRKKRDIPDYLCGKI 213

Query: 278 TLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLIVQWCE 337
           + E+M +P I  +G TY+R+ I+  L       P T   L    L PN A++ +I  +  
Sbjct: 214 SFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFIS 273

Query: 338 KN 339
           +N
Sbjct: 274 EN 275

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 73.7 bits (180), Expect = 1e-13
 Identities = 89/598 (14%), Positives = 173/598 (28%), Gaps = 136/598 (22%)

Query: 125 VYDKLYEALDDVPYDELGISDEVKEQVELMRMQLQRAKGRTDTQD-MELAMD-----MMV 178
           V D     L     D + +S +       +      +K     Q  +E  +      +M 
Sbjct: 38  VQDMPKSILSKEEIDHIIMSKDAVSGTLRL-FWTLLSKQEEMVQKFVEEVLRINYKFLMS 96

Query: 179 VFSKEDDRNADSAILERLAKKLE-LHTIADLKAETLAVRKLVKERGGHKADSISQITDLL 237
               E      S +     ++ + L+    +        K    R         ++   L
Sbjct: 97  PIKTEQ--RQPSMMTRMYIEQRDRLYNDNQV------FAKYNVSR----LQPYLKLRQAL 144

Query: 238 GKFKQIAGVEDTLVLDG------SVSARKLQRCQTMLVPHEFLCPVTLEIMTDPVI-VAT 290
            + +    V    ++DG      +  A  L  C +    ++  C      M   +  +  
Sbjct: 145 LELRPAKNV----LIDGVLGSGKTWVA--LDVCLS----YKVQC-----KMDFKIFWLNL 189

Query: 291 GQTYERESIQRWLNS-NHKTCPKTGQILDHLSLAP------NYALRNLIVQWCEKN---- 339
                 E++   L    ++  P      DH S            LR L+     +N    
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249

Query: 340 --NVELPK---------------KDTNTGSDASSAALIEEICS--LIQNLSSSQ-LNIKR 379
             NV+  K               +     +D  SAA    I        L+  +  ++  
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQV-TDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308

Query: 380 DSV-MKIRMLSKE----NPDNRILIA---NNGGIRPLVQLLSYPDSKIQEHTVTALLNLS 431
             +  + + L +E    NP    +IA    +G          + +       + + LN  
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW--DNWKHVNCDKLTTIIESSLN-V 365

Query: 432 LDETNKRH------IAREGA-IPA-IIEIL-QNGTNEARENSAAALFSLSMLDENRVMVG 482
           L+    R       +    A IP  ++ ++  +            L   S++++      
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE-- 423

Query: 483 NLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGM 542
           +   IP +     Y  ++ K +   AL    ++  N  +   +     L+    D+    
Sbjct: 424 STISIPSI-----YLELKVKLENEYALHRSIVDHYNIPKTFDSD---DLIPPYLDQ---- 471

Query: 543 VDEALSILQLLASH-----PEGRNEIGR-----LSFIETLVEIIKNGTPKNKECA-TSVL 591
                     +  H        R  + R       F+E   +I  + T  N   +  + L
Sbjct: 472 -----YFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE--QKIRHDSTAWNASGSILNTL 524

Query: 592 LELGLNNSYFILAALQYGVYEHLVE-----ITRCGTNRGQRKANSLLQH--MSKREHI 642
            +L     Y          YE LV      + +   N    K   LL+   M++ E I
Sbjct: 525 QQLKFYKPYIC---DNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAI 579

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.0 bits (147), Expect = 8e-10
 Identities = 94/619 (15%), Positives = 189/619 (30%), Gaps = 182/619 (29%)

Query: 64  LVPLLEE--IRELDGQ---------VSSEALNCLANLKKPLLAAKKLLKD-CNYGSKIY- 110
           ++ + E+  +   D +         +S E ++ +   K  +    +L     +   ++  
Sbjct: 21  ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ 80

Query: 111 ------LAAESEAVMSRFHAVY--------------DKLYEALDDVPYDELGISDEVKEQ 150
                 L    + +MS                    D+LY   D+  + +  +S    + 
Sbjct: 81  KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN--DNQVFAKYNVSRL--QP 136

Query: 151 VELMR---MQLQRAK----------GRT-------DTQDMELAMDMMVV---FSKEDDRN 187
              +R   ++L+ AK          G+T        +  ++  MD  +        +   
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE 196

Query: 188 ADSAILERLAKKLEL-------------HTIADLKAETLAVRKLVKERGGHKA----DSI 230
               +L++L  +++                I  ++AE   +R+L+K +          ++
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE---LRRLLKSKPYENCLLVLLNV 253

Query: 231 ---------------------SQITDLLG--KFKQIAGVEDTLVLDGSVSARKLQRCQTM 267
                                 Q+TD L       I+    ++ L        L +    
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313

Query: 268 LV---PHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQI----LDHL 320
                P E L        T+P  ++      R+ +  W N  H  C K   I    L+ L
Sbjct: 314 RPQDLPREVL-------TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366

Query: 321 S---LAPNYALRNLIVQWCEKNNVELPKKDTNTGSDASS---AALIEEICSLIQNLSSSQ 374
                   +    L V          P    +  +   S     +I+    ++ N     
Sbjct: 367 EPAEYRKMF--DRLSV---------FP-PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414

Query: 375 LNIKRD------SVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALL 428
             +++       S+  I +  K   +N   +      R +V   + P +   +     L+
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYALH-----RSIVDHYNIPKTFDSDD----LI 465

Query: 429 NLSLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLD----ENRV--MVG 482
              LD+    HI            L+N  +  R      LF +  LD    E ++     
Sbjct: 466 PPYLDQYFYSHIGHH---------LKNIEHPERMT----LFRMVFLDFRFLEQKIRHDST 512

Query: 483 NLNGIPPLVNLL----RYGS-IRGKKDAATALFNLSINQSNKSRAIKAGIIPS----LLK 533
             N    ++N L     Y   I         L N  ++   K   I+  +I S    LL+
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPK---IEENLICSKYTDLLR 569

Query: 534 L-LEDKALGMVDEALSILQ 551
           + L  +   + +EA   +Q
Sbjct: 570 IALMAEDEAIFEEAHKQVQ 588

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 7e-07
 Identities = 37/344 (10%), Positives = 97/344 (28%), Gaps = 102/344 (29%)

Query: 27  DRVVNELMQVIDTIGSYGGFRKTQRKE----CLNMVRRLKLLVPLLEEIRELDGQVSSEA 82
           D +       I            + K      L+               ++L      E 
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC------------RPQDL----PREV 322

Query: 83  LNCLANLKKPLLAA--KKLLKDC-----NYGSKIYLAAESEAVMSRFHAVYD-----KLY 130
           L        P   +   + ++D      N+  K     +   ++     V +     K++
Sbjct: 323 LTTN-----PRRLSIIAESIRDGLATWDNW--KHVNCDKLTTIIESSLNVLEPAEYRKMF 375

Query: 131 EAL----DDV--PYDELGI--SDEVKEQVELMRMQLQR---AKGRTDTQDMELAMDMMVV 179
           + L         P   L +   D +K  V ++  +L +    + +     + +   + + 
Sbjct: 376 DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI-PSIYLE 434

Query: 180 FSKEDDRNAD--SAILER--LAKKLEL------------------HTIADLKAETLAV-- 215
              + +       +I++   + K  +                   H       E + +  
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494

Query: 216 ----------RKLVKERGGHKADSISQITDLLGKFK----QIAGVEDTLVLDGSVSARK- 260
                     +K+         ++   I + L + K     I   ++    +  V+A   
Sbjct: 495 MVFLDFRFLEQKI--RHDSTAWNASGSILNTLQQLKFYKPYI--CDNDPKYERLVNAILD 550

Query: 261 -LQRCQTMLVPHEFLCPVTLEIMTDPVIVATGQTYER--ESIQR 301
            L + +  L+  ++   + + +M +         +E   + +QR
Sbjct: 551 FLPKIEENLICSKYTDLLRIALMAE-----DEAIFEEAHKQVQR 589

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A Length = 61

 Score = 60.8 bits (148), Expect = 3e-12
 Identities = 8/54 (14%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 272 EFLCPVTLEIMTDPVI-VATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAP 324
             LC ++ ++   PV+   +   +E+  +++++       P T + L    +  
Sbjct: 3   HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVE 55

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92

 Score = 53.2 bits (128), Expect = 3e-09
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 7/69 (10%)

Query: 269 VPHEFLCPVTLEIMTDPVIVAT-GQTYERESIQRWLNSNHK-TCP---KTGQILDHLSLA 323
           +P E LC +  +IMTD V++   G +Y  E I+  L  + + TCP   +     D  +L 
Sbjct: 10  IPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD--ALI 67

Query: 324 PNYALRNLI 332
            N  LR  +
Sbjct: 68  ANKFLRQAV 76

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Length = 651

 Score = 58.6 bits (141), Expect = 4e-09
 Identities = 43/262 (16%), Positives = 93/262 (35%), Gaps = 39/262 (14%)

Query: 349 NTGSDASSAALIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPL 408
           + G   + A  I+++C  + +  S+ L+ +R++V  ++ LSK+      L      +  L
Sbjct: 12  SAGPQHTEAETIQKLCDRVAS--STLLDDRRNAVRALKSLSKKYR----LEVGIQAMEHL 65

Query: 409 VQLLS--YPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTNEARENSAA 466
           + +L     DS+I  + +  L N+  ++                   +    E      +
Sbjct: 66  IHVLQTDRSDSEIIGYALDTLYNIISND-------------------EEEEVEENSTRQS 106

Query: 467 ALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAI--- 523
                   +     +     +  L++LL       +      L +L      + + I   
Sbjct: 107 EDLGSQFTEI---FIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILV 163

Query: 524 KAGIIPSLLKLLEDKALGMVDEALSILQLLASH-PEGRNEIGRLSFIETLVEIIKN---- 578
               +  L+ LL D    + ++ + +LQ L       +  +   +  E L++II      
Sbjct: 164 SPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNS 223

Query: 579 -GTPKNKECATSVLLELGLNNS 599
            G    ++C   +   L  NNS
Sbjct: 224 DGGIVVEDCLILLQNLLKNNNS 245

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Length = 651

 Score = 53.2 bits (127), Expect = 2e-07
 Identities = 30/178 (16%), Positives = 65/178 (36%), Gaps = 18/178 (10%)

Query: 396 RILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSL---DETNKRHIAREGAIPAIIEI 452
            I I     +  L+ LL   D  ++   V  L +L      +  +  +     +  ++++
Sbjct: 115 EIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDL 174

Query: 453 LQNGTNEARENSAAALFSLSMLDEN-RVMVGNLNGIPPLVNLLRY-GSIRGK---KDAAT 507
           L +     R +    L +L+  +   + +V   N    L++++   G+  G    +D   
Sbjct: 175 LADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLI 234

Query: 508 ALFNL-SINQSNKSRAIKAGIIPSLLKLLEDKALGM---------VDEALSILQLLAS 555
            L NL   N SN++   +   I  +    E               +   L ++++L S
Sbjct: 235 LLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVS 292

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74

 Score = 49.4 bits (118), Expect = 5e-08
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 5/62 (8%)

Query: 269 VPHEFLCPVTLEIMTDPVIVAT-GQTYERESIQRWLN-SNHKTCP---KTGQILDHLSLA 323
           +P E LC +  +IMTD V++   G +Y  E I+  L  S+  TCP   +     D LS  
Sbjct: 12  IPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGP 71

Query: 324 PN 325
            +
Sbjct: 72  SS 73

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 54.0 bits (129), Expect = 1e-07
 Identities = 30/157 (19%), Positives = 53/157 (33%), Gaps = 21/157 (13%)

Query: 394 DNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEIL 453
            N   I     I  L + +       ++  V  + N++  +     +A++GA+  I+E L
Sbjct: 448 FNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYL 507

Query: 454 QNGTNEARENSAAALFSLSML--DENRVMV----GNLNGIPPLVNLLRYGSIRGKK---- 503
            N  +           +L+ +    N  ++      LN IP L  LL   +         
Sbjct: 508 ANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHN 567

Query: 504 ----------DAATALFNL-SINQSNKSRAIKAGIIP 529
                     +A  AL NL S   S+     K  +  
Sbjct: 568 DEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVST 604

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 48.3 bits (114), Expect = 7e-06
 Identities = 28/186 (15%), Positives = 61/186 (32%), Gaps = 30/186 (16%)

Query: 434 ETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNL 493
             N+++I R   I  +   + N +   ++     +++++        +     +  ++  
Sbjct: 447 LFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEY 506

Query: 494 LRYGSIRGKKD---AATALFNLSINQS-----NKSRAIKAGIIPSLLKLL---------- 535
           L      G+        AL  + I  +      K  A+ A  IP L +LL          
Sbjct: 507 LANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNA--IPFLFELLPRSTPVDDNP 564

Query: 536 ----EDKALGMVDEALSILQLLASHPEG------RNEIGRLSFIETLVEIIKNGTPKNKE 585
               E   L    EAL  L  LAS          ++ +    +  T+  ++ +     + 
Sbjct: 565 LHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQR 624

Query: 586 CATSVL 591
               ++
Sbjct: 625 STLELI 630

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 47.9 bits (113), Expect = 8e-06
 Identities = 35/252 (13%), Positives = 86/252 (34%), Gaps = 36/252 (14%)

Query: 365 SLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTV 424
            L + + +   N K+  V  I  ++  + +    +A  G ++ +++ L+      +   +
Sbjct: 461 FLKREMHNLSPNCKQQVVRIIYNIT-RSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRI 519

Query: 425 TALLNLS--LDETNKRHI----AREGAIPAIIEILQNGTNEAREN--------------S 464
                L+  L  TN   I    +   AIP + E+L   T                    +
Sbjct: 520 LGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEA 579

Query: 465 AAALFSLSMLDEN------RVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSN 518
             AL +L+  + +      + +V        + NL+   ++  ++     + N+  +   
Sbjct: 580 LLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLT 639

Query: 519 KSRAIKAGIIPS-------LLKLLEDKALGMVDEALSILQLLASHPEGRNE--IGRLSFI 569
            +        P        L+KLL+   +       +I   +A+      +  + +   I
Sbjct: 640 IAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELI 699

Query: 570 ETLVEIIKNGTP 581
           E  +++  +   
Sbjct: 700 ENAIQVFADQID 711

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 46.7 bits (110), Expect = 2e-05
 Identities = 30/209 (14%), Positives = 67/209 (32%), Gaps = 5/209 (2%)

Query: 348 TNTGSDASSAALIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGG-IR 406
           T + +  +   L +     I  +S   +     SV  +  LS      +I+I +N     
Sbjct: 321 TWSFTKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLS-LKASVKIMIRSNESFTE 379

Query: 407 PLVQLL-SYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTNEARENSA 465
            L+ ++ S   +      +  + NLS     +                      A +  A
Sbjct: 380 ILLTMIKSQKMTHCLYGLLVIMANLS--TLPEEXXXXXXXXXXXXXXXXXXXPAADKVGA 437

Query: 466 AALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKA 525
                  +L  N   +     I  L   +   S   K+     ++N++ +++   +  + 
Sbjct: 438 EKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQ 497

Query: 526 GIIPSLLKLLEDKALGMVDEALSILQLLA 554
           G +  +L+ L +K        +   + L 
Sbjct: 498 GAVKIILEYLANKQDIGEPIRILGCRALT 526

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 47.5 bits (113), Expect = 6e-07
 Identities = 13/64 (20%), Positives = 26/64 (40%)

Query: 269 VPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYAL 328
           +  ++ CP+ L  + + V    G  + +  I + +      CP   +IL    L P+   
Sbjct: 15  LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFA 74

Query: 329 RNLI 332
           +  I
Sbjct: 75  KREI 78

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 47.7 bits (113), Expect = 7e-07
 Identities = 10/62 (16%), Positives = 23/62 (37%), Gaps = 1/62 (1%)

Query: 272 EFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDH-LSLAPNYALRN 330
            F C    E++  P+         ++ + R   +   +CP     L    ++  N  L+ 
Sbjct: 52  TFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQT 111

Query: 331 LI 332
           ++
Sbjct: 112 VL 113

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 46.9 bits (111), Expect = 2e-06
 Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 272 EFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDH-LSLAPNYALRN 330
            F+C    E++  PV         ++ +QR   +   +CP     L     + PN  L+ 
Sbjct: 78  SFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQT 137

Query: 331 LI 332
           L+
Sbjct: 138 LL 139

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 44.8 bits (106), Expect = 4e-06
 Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 2/68 (2%)

Query: 269 VPHEFLCPVTLEIMTDPVIVAT-GQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYA 327
           +     C +  E     +I+      Y    I+++L S    CP     +    L  N  
Sbjct: 19  IDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFL-SYKTQCPTCCVTVTEPDLKNNRI 77

Query: 328 LRNLIVQW 335
           L  L+   
Sbjct: 78  LDELVKSL 85

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 44.1 bits (104), Expect = 7e-06
 Identities = 16/82 (19%), Positives = 25/82 (30%), Gaps = 1/82 (1%)

Query: 269 VPHEFLCPVTLEIMTDPVIVAT-GQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYA 327
           +   F C + +E + D  +     +      I+RWL      CP     L    L     
Sbjct: 19  IAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRW 78

Query: 328 LRNLIVQWCEKNNVELPKKDTN 349
              +  Q        L K + N
Sbjct: 79  AEEVTQQLDTLQLCSLTKHEEN 100

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 43.7 bits (103), Expect = 1e-05
 Identities = 13/72 (18%), Positives = 24/72 (33%), Gaps = 7/72 (9%)

Query: 272 EFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCP-------KTGQILDHLSLAP 324
           E  C + +EI+ +PV +    T  +   Q  +      CP          +     +   
Sbjct: 15  ECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLV 74

Query: 325 NYALRNLIVQWC 336
           N  L  +I +  
Sbjct: 75  NVELWTIIQKHY 86

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 34/178 (19%), Positives = 63/178 (35%), Gaps = 37/178 (20%)

Query: 385 IRMLSKENPDNRI-------LIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNK 437
           I+ L  E+   R         I +   + PL++ L   D  +++    AL          
Sbjct: 56  IKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVAL---------- 105

Query: 438 RHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYG 497
             I  E A+  +I+ L++     R  +A AL  +          G+   + PL+  L+  
Sbjct: 106 GQIGDERAVEPLIKALKDEDWFVRIAAAFALGEI----------GDERAVEPLIKALKDE 155

Query: 498 SIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLAS 555
               ++ AA AL  +   +             ++ KL E         A++ L+   S
Sbjct: 156 DGWVRQSAADALGEIGGERV----------RAAMEKLAETGTGFARKVAVNYLETHKS 203

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 41/230 (17%), Positives = 78/230 (33%), Gaps = 55/230 (23%)

Query: 391 ENPDNR----ILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAI 446
            +P        L A+   +   ++ L      ++     AL            I  E A+
Sbjct: 3   SHPQFEKAAAPLRADPEKVEMYIKNLQDDSYYVRRAAAYAL----------GKIGDERAV 52

Query: 447 PAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAA 506
             +I+ L++     R  +A AL            +G+   + PL+  L+      ++ AA
Sbjct: 53  EPLIKALKDEDAWVRRAAADAL----------GQIGDERAVEPLIKALKDEDGWVRQSAA 102

Query: 507 TALFNLSINQSNKSRAIKAGIIPSLLKLLEDK----------ALGMV--DEALSILQLLA 554
            AL  +           +A  +  L+K L+D+          ALG +  + A+  L    
Sbjct: 103 VALGQI--------GDERA--VEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKAL 152

Query: 555 SHPEGR---------NEIGRLSFIETLVEIIKNGTPKNKECATSVLLELG 595
              +G           EIG       + ++ + GT   ++ A + L    
Sbjct: 153 KDEDGWVRQSAADALGEIGGERVRAAMEKLAETGTGFARKVAVNYLETHK 202

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165

 Score = 43.8 bits (103), Expect = 3e-05
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 271 HEFLCPVTLEIMTDPV-IVATGQTYERESIQRWLNSNHKTCPK-TGQILDHLSLAPNYAL 328
            E +CP+ L+++ + +        +  + I   L S +K CP    +++   SL P+   
Sbjct: 53  SELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNF 112

Query: 329 RNLI 332
             LI
Sbjct: 113 DALI 116

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116

 Score = 42.6 bits (100), Expect = 3e-05
 Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 1/62 (1%)

Query: 272 EFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSL-APNYALRN 330
              C +   I+ DPV  +    + R  I R L      CP          L +P  +  N
Sbjct: 23  SISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLN 82

Query: 331 LI 332
           ++
Sbjct: 83  IL 84

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 34/178 (19%), Positives = 63/178 (35%), Gaps = 37/178 (20%)

Query: 385 IRMLSKENPDNRIL-------IANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNK 437
           I+ L  E+   R         I +   + PL++ L   D  +++    AL          
Sbjct: 51  IKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQ-------- 102

Query: 438 RHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYG 497
             I  E A+  +I+ L++     R  +A AL  +          G+   + PL+  L+  
Sbjct: 103 --IGDERAVEPLIKALKDEDWFVRIAAAFALGEI----------GDERAVEPLIKALKDE 150

Query: 498 SIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLAS 555
               ++ AA AL  +              +  ++ KL E         A++ L+   S
Sbjct: 151 DGWVRQSAADALGEIG----------GERVRAAMEKLAETGTGFARKVAVNYLETHKS 198

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 44.3 bits (104), Expect = 5e-05
 Identities = 28/195 (14%), Positives = 75/195 (38%), Gaps = 18/195 (9%)

Query: 365 SLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSK-IQEHT 423
            LI+ L      + ++++  I +++K   D    +     ++ L  LL   ++  + +  
Sbjct: 36  KLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEI 90

Query: 424 VTALLNLSLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGN 483
             A   ++ ++        +  IP +    + G  + + N + AL  ++  +   +    
Sbjct: 91  AKAFGQMAKEKPE----LVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA--- 143

Query: 484 LNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMV 543
            + +   +++L   +   K  A   +  +     N  + +    +P ++ LL D    + 
Sbjct: 144 -SIVRDFMSMLSSKNREDKLTALNFIEAMG---ENSFKYVNP-FLPRIINLLHDGDEIVR 198

Query: 544 DEALSILQLLASHPE 558
             A+  L  LA+  +
Sbjct: 199 ASAVEALVHLATLND 213

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 42.8 bits (100), Expect = 7e-05
 Identities = 13/66 (19%), Positives = 27/66 (40%)

Query: 269 VPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYAL 328
           +  ++ CP+ L  + + V    G  + +  I + +      CP   +IL    L P+   
Sbjct: 15  LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFA 74

Query: 329 RNLIVQ 334
           +  I+ 
Sbjct: 75  KREILS 80

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 39.8 bits (93), Expect = 1e-04
 Identities = 7/43 (16%), Positives = 15/43 (34%)

Query: 269 VPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCP 311
           V  ++ C     ++  P     G  +    +   L+S+   C 
Sbjct: 12  VEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCT 54

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 23/146 (15%), Positives = 47/146 (32%), Gaps = 31/146 (21%)

Query: 405 IRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTNEARENS 464
           + P    ++  +  ++    TAL  +            + A   ++E L N     R  +
Sbjct: 14  LVPRGSHMADENKWVRRDVSTALSRM-----------GDEAFEPLLESLSNEDWRIRGAA 62

Query: 465 AAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIK 524
           A  + +            +   + PL+ LL   S   +  AA +L  +           +
Sbjct: 63  AWIIGNF----------QDERAVEPLIKLLEDDSGFVRSGAARSLEQI--------GGER 104

Query: 525 AGIIPSLLKLLEDKALGMVDEALSIL 550
                ++ KL E         A++ L
Sbjct: 105 V--RAAMEKLAETGTGFARKVAVNYL 128

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 40.6 bits (95), Expect = 1e-04
 Identities = 10/66 (15%), Positives = 26/66 (39%), Gaps = 6/66 (9%)

Query: 272 EFLCPVTLEIMTDPVIVAT-GQTYERESIQRWLNSNHKTCP----KTGQILDHLSLAPNY 326
             +C +      D   +     ++ +  I R+L    K CP    +  +    L++  + 
Sbjct: 15  HLMCVLCGGYFIDATTIIECLHSFCKTCIVRYL-ETSKYCPICDVQVHKTRPLLNIRSDK 73

Query: 327 ALRNLI 332
            L++++
Sbjct: 74  TLQDIV 79

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Length = 85

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 5/66 (7%)

Query: 272 EFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKT-----CPKTGQILDHLSLAPNY 326
           E  CP+ LE++ +PV      ++ R  I     SN  T     CP         +L PN 
Sbjct: 19  EVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNL 78

Query: 327 ALRNLI 332
            + N++
Sbjct: 79  HVANIV 84

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 112

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 2/63 (3%)

Query: 272 EFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKT--CPKTGQILDHLSLAPNYALR 329
              CP+ LE++ +PV       + +  + + LN       CP     +   SL  +    
Sbjct: 21  ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFS 80

Query: 330 NLI 332
            L+
Sbjct: 81  QLV 83

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141

 Score = 40.1 bits (93), Expect = 4e-04
 Identities = 13/84 (15%), Positives = 25/84 (29%), Gaps = 1/84 (1%)

Query: 269 VPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYAL 328
           +  ++LC     ++  P     G  Y    +   L+S  + C        +         
Sbjct: 28  LEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILES 87

Query: 329 RNLIVQWCEKNNVE-LPKKDTNTG 351
            +       +  VE LP    + G
Sbjct: 88  SSAFPDNAARREVESLPAVCPSDG 111

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 37.5 bits (87), Expect = 8e-04
 Identities = 5/41 (12%), Positives = 12/41 (29%), Gaps = 1/41 (2%)

Query: 271 HEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCP 311
               C + L+    PV +     +    ++       + C 
Sbjct: 14  TVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKR-CA 53

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	643
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.97
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.97
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.96
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.96
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.96
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.95
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.95
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.95
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.95
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.94
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.94
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.94
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.94
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.93
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.93
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.93
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.93
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.93
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.92
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.92
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.92
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.92
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.92
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.9
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.9
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.9
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.89
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.89
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.88
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.88
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.88
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.87
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.87
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.86
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.86
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	99.82
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	99.81
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	99.81
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	99.81
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.8
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.8
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.79
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.76
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.72
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	99.7
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	99.66
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	99.57
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	99.53
3grl_A	651	General vesicular transport factor P115; vesicle t	99.51
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	99.47
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	99.42
1z6u_A	150	NP95-like ring finger protein isoform B; structura	99.38
3grl_A	651	General vesicular transport factor P115; vesicle t	99.35
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.29
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.26
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.26
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.24
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.24
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	99.24
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.23
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.23
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	99.23
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.22
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.22
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	99.21
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	99.21
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.2
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.2
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.2
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.2
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	99.19
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.17
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	99.16
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.16
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.09
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	99.09
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	99.07
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	99.07
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	99.07
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	99.06
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.03
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.02
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	98.96
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	98.95
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	98.95
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	98.93
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	98.92
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	98.91
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	98.86
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	98.84
2ect_A	78	Ring finger protein 126; metal binding protein, st	98.82
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	98.8
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	98.8
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.79
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.74
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	98.72
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	98.7
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	98.68
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	98.67
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	98.67
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.66
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.66
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	98.63
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	98.63
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	98.62
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.62
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	98.61
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	98.57
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	98.56
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.47
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.46
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.46
1qgr_A	876	Protein (importin beta subunit); transport recepto	98.37
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.37
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	98.36
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	98.34
1qgr_A	876	Protein (importin beta subunit); transport recepto	98.34
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	98.32
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	98.31
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.29
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	98.24
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	98.24
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	98.24
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.22
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.21
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.19
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.13
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.12
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	98.07
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.06
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	97.98
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	97.96
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	97.93
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	97.9
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	97.86
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	97.82
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	97.81
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	97.81
2ea5_A	68	Cell growth regulator with ring finger domain prot	97.77
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	97.74
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	97.74
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	97.69
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	97.66
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	97.66
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	97.62
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	97.4
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.39
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	97.32
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	97.24
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	97.15
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	97.05
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	97.04
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	97.0
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	96.76
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	96.64
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	96.3
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	96.25
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	96.08
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	96.02
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	96.01
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	95.72
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	95.41
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	95.13
3i2d_A	371	E3 SUMO-protein ligase SIZ1; signal transduction,	94.92
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	94.71
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	94.59
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	94.42
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	94.14
4fo9_A	360	E3 SUMO-protein ligase PIAS2; E3 ligase, pinit dom	94.02
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	93.39
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	93.3
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	92.45
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	92.09
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	91.8
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	91.37
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	91.28
3nw0_A	238	Non-structural maintenance of chromosomes element	90.93
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	90.45
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	89.98
2x1g_F	971	Cadmus; transport protein, developmental protein,	89.57
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	88.44
2x1g_F	971	Cadmus; transport protein, developmental protein,	87.86
2x19_B	963	Importin-13; nuclear transport, protein transport;	87.4
2x19_B	963	Importin-13; nuclear transport, protein transport;	87.04
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	85.67
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	84.97
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	82.75
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	82.53
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	82.25
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	80.1

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.97  E-value=5.7e-30  Score=270.60  Aligned_cols=263  Identities=18%  Similarity=0.227  Sum_probs=237.6

Q ss_pred             HHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcC-----------CCHHHHHHHHHHHHhcccCh-hhHHHHH-h
Q 006494          376 NIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSY-----------PDSKIQEHTVTALLNLSLDE-TNKRHIA-R  442 (643)
Q Consensus       376 ~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~-----------~~~~~~~~a~~~L~nLs~~~-~~k~~i~-~  442 (643)
                      ..+..|++.|.+++. ++++|..+++.|++++|+.+|..           .++.+|.+|+++|.||+.++ .+|..+. .
T Consensus        47 ~~~~~A~~aL~nls~-d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~  125 (354)
T 3nmw_A           47 HQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM  125 (354)
T ss_dssp             GTHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence            456689999999995 58999999999999999999952           24678999999999999765 4888886 4


Q ss_pred             cCChHHHHHHHccCCHHHHHHHHHHHHHcccc--ccccchhhccCChHHHHHHc-ccCChhhHHHHHHHHHHhhc-CCCc
Q 006494          443 EGAIPAIIEILQNGTNEARENSAAALFSLSML--DENRVMVGNLNGIPPLVNLL-RYGSIRGKKDAATALFNLSI-NQSN  518 (643)
Q Consensus       443 ~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~--~~~k~~i~~~g~i~~Lv~lL-~s~~~~~k~~A~~aL~nLs~-~~en  518 (643)
                      .|+|+.|+.+|++++.+++++|+++|.+|+..  +++|..|.+.|+|++|+.+| ++++..+++.|+.+|+||+. ++++
T Consensus       126 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~n  205 (354)
T 3nmw_A          126 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN  205 (354)
T ss_dssp             HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhh
Confidence            56699999999999999999999999999974  46899999999999999975 66788999999999999999 6688


Q ss_pred             hHHHH-hcCcHHHHHHHhccCCh----hhHHHHHHHHHHHhC----ChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHH
Q 006494          519 KSRAI-KAGIIPSLLKLLEDKAL----GMVDEALSILQLLAS----HPEGRNEIGRLSFIETLVEIIKNGTPKNKECATS  589 (643)
Q Consensus       519 ~~~iv-~~G~v~~Lv~lL~~~~~----~~~~~Al~iL~nLa~----~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~  589 (643)
                      +..++ ..|+++.|+++|.++++    .+++.|+++|.||+.    +++++..+.+.|+++.|+.+|++++...+++|+.
T Consensus       206 k~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~  285 (354)
T 3nmw_A          206 KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACG  285 (354)
T ss_dssp             HHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHH
T ss_pred             hHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHH
Confidence            98888 69999999999987544    489999999999996    7899999999999999999999999999999999


Q ss_pred             HHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhhc
Q 006494          590 VLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSKR  639 (643)
Q Consensus       590 ~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~~  639 (643)
                      +|++|+.++++..+.+.+.|++++|+.++.++++++++.|...|++|...
T Consensus       286 aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~  335 (354)
T 3nmw_A          286 TLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN  335 (354)
T ss_dssp             HHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence            99999988899999999999999999999999999999999999999864

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.97  E-value=2.5e-29  Score=276.10  Aligned_cols=278  Identities=22%  Similarity=0.283  Sum_probs=243.7

Q ss_pred             HHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccC-hhhHHHH
Q 006494          362 EICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLD-ETNKRHI  440 (643)
Q Consensus       362 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~k~~i  440 (643)
                      .++.|+..|++++++++..|+..|++++.+++.++..+.+.|+||.|+.+|+++++++|..|+++|.||+.+ ++++..|
T Consensus         3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i   82 (457)
T 1xm9_A            3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET   82 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred             CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            478999999999999999999999999988888898999999999999999999999999999999999976 8999999


Q ss_pred             HhcCChHHHHHHHc-cCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcc--------cC--------ChhhHH
Q 006494          441 AREGAIPAIIEILQ-NGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLR--------YG--------SIRGKK  503 (643)
Q Consensus       441 ~~~g~i~~Lv~lL~-~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~--------s~--------~~~~k~  503 (643)
                      ++.|++++|+++|+ +++++++++|+++|++|+..+++|..+.+ |++++|+.+|.        ++        +..+.+
T Consensus        83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~  161 (457)
T 1xm9_A           83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF  161 (457)
T ss_dssp             HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred             HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHH
Confidence            99999999999999 88999999999999999999889999999 99999999993        22        345666


Q ss_pred             HHHHHHHHhhcCCCchHHHHhc-CcHHHHHHHhcc------CChhhHHHHHHHHHHHhCC--------------------
Q 006494          504 DAATALFNLSINQSNKSRAIKA-GIIPSLLKLLED------KALGMVDEALSILQLLASH--------------------  556 (643)
Q Consensus       504 ~A~~aL~nLs~~~en~~~iv~~-G~v~~Lv~lL~~------~~~~~~~~Al~iL~nLa~~--------------------  556 (643)
                      +|+++|.|||.+++++..+++. |++++|+.+|.+      .+..+++.|+.+|.||+..                    
T Consensus       162 ~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~  241 (457)
T 1xm9_A          162 NATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY  241 (457)
T ss_dssp             HHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----
T ss_pred             HHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccccc
Confidence            9999999999998889999997 999999999975      3567899999999999742                    


Q ss_pred             -------------------------------hhhHHHHHhcCcHHHHHHHHhcC-ChHHHHHHHHHHHHhccCCHHH---
Q 006494          557 -------------------------------PEGRNEIGRLSFIETLVEIIKNG-TPKNKECATSVLLELGLNNSYF---  601 (643)
Q Consensus       557 -------------------------------~~~~~~i~~~g~i~~Lv~lL~~~-s~~~ke~A~~~L~~L~~~~~~~---  601 (643)
                                                     +.+.+.+...|+++.|+.+|.++ ++..++.|+++|.+||.++...   
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~  321 (457)
T 1xm9_A          242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG  321 (457)
T ss_dssp             ------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHH
T ss_pred             ccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHH
Confidence                                           12334455668899999999764 6899999999999999875432   


Q ss_pred             H-HHH-HHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhhcc
Q 006494          602 I-LAA-LQYGVYEHLVEITRCGTNRGQRKANSLLQHMSKRE  640 (643)
Q Consensus       602 ~-~~~-~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~~~  640 (643)
                      . +.+ .+.|++|.|+.++.++++++++.|.++|++|....
T Consensus       322 ~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~  362 (457)
T 1xm9_A          322 MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP  362 (457)
T ss_dssp             HHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG
T ss_pred             HHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH
Confidence            1 333 36899999999999999999999999999998643

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.96  E-value=1.7e-28  Score=272.81  Aligned_cols=279  Identities=18%  Similarity=0.245  Sum_probs=241.7

Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhccc--ChhhHH
Q 006494          361 EEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSL--DETNKR  438 (643)
Q Consensus       361 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~--~~~~k~  438 (643)
                      ..++.||+.|.+++++++..|+..|++++..++.+|..+++.|+|+.|+.+|++++.++|+.|+++|.||+.  +++||.
T Consensus        48 ~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~  127 (584)
T 3l6x_A           48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKI  127 (584)
T ss_dssp             CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHH
T ss_pred             ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHH
Confidence            469999999999999999999999999999899999999999999999999999999999999999999997  489999


Q ss_pred             HHHhcCChHHHHHHHcc-CCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcc------------------cCCh
Q 006494          439 HIAREGAIPAIIEILQN-GTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLR------------------YGSI  499 (643)
Q Consensus       439 ~i~~~g~i~~Lv~lL~~-~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~------------------s~~~  499 (643)
                      .|++.|+|++|+.+|++ ++.+++++|+++|++||..+++|..|++ +++++|+.++.                  ..+.
T Consensus       128 ~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~  206 (584)
T 3l6x_A          128 AIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWE  206 (584)
T ss_dssp             HHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCH
T ss_pred             HHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccH
Confidence            99999999999999997 5789999999999999999999999995 67999999872                  1246


Q ss_pred             hhHHHHHHHHHHhhcCCCc-hHHHHh-cCcHHHHHHHhcc------CChhhHHHHHHHHHHHhCCh--------------
Q 006494          500 RGKKDAATALFNLSINQSN-KSRAIK-AGIIPSLLKLLED------KALGMVDEALSILQLLASHP--------------  557 (643)
Q Consensus       500 ~~k~~A~~aL~nLs~~~en-~~~iv~-~G~v~~Lv~lL~~------~~~~~~~~Al~iL~nLa~~~--------------  557 (643)
                      .++++|+.+|+||+.+.++ |..+++ .|+++.|+.+|.+      .+...++.|+++|.||+..-              
T Consensus       207 ~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~  286 (584)
T 3l6x_A          207 SVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAA  286 (584)
T ss_dssp             HHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-----
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhc
Confidence            8999999999999997754 888888 5667899999974      35578999999999999762              


Q ss_pred             ------------hhHHHHHhcCcHHHHHHHHhc-CChHHHHHHHHHHHHhccCCHH----HHHHHHHcCcHHHHHHHHhh
Q 006494          558 ------------EGRNEIGRLSFIETLVEIIKN-GTPKNKECATSVLLELGLNNSY----FILAALQYGVYEHLVEITRC  620 (643)
Q Consensus       558 ------------~~~~~i~~~g~i~~Lv~lL~~-~s~~~ke~A~~~L~~L~~~~~~----~~~~~~~~g~i~~L~~ll~~  620 (643)
                                  .+.+.+...++++.|+.+|.. .++.++++|+.+|.+||.++..    ....+.+.|+++.|+.++.+
T Consensus       287 ~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s  366 (584)
T 3l6x_A          287 PNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTN  366 (584)
T ss_dssp             ---------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGC
T ss_pred             ccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcC
Confidence                        122233344667889999964 6799999999999999987632    22334457899999999999


Q ss_pred             CCHHHHHHHHHHHHHhhhcc
Q 006494          621 GTNRGQRKANSLLQHMSKRE  640 (643)
Q Consensus       621 g~~~~k~~A~~lL~~l~~~~  640 (643)
                      +++++++.|.++|++|+...
T Consensus       367 ~~~~v~~~A~~aL~nLs~~~  386 (584)
T 3l6x_A          367 EHERVVKAASGALRNLAVDA  386 (584)
T ss_dssp             SCHHHHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHHhCCh
Confidence            99999999999999998753

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.96  E-value=6.2e-29  Score=270.41  Aligned_cols=262  Identities=18%  Similarity=0.227  Sum_probs=236.3

Q ss_pred             HHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcC-----------CCHHHHHHHHHHHHhcccChh-hHHHHH-hcC
Q 006494          378 KRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSY-----------PDSKIQEHTVTALLNLSLDET-NKRHIA-REG  444 (643)
Q Consensus       378 ~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~-----------~~~~~~~~a~~~L~nLs~~~~-~k~~i~-~~g  444 (643)
                      +..|++.|.+++ .++++|..+.+.|++++|+.+|..           .++.++.+|+++|.||+.+++ ++..+. ..|
T Consensus       165 ~~qAv~aL~nls-~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~G  243 (458)
T 3nmz_A          165 ICPAVCVLMKLS-FDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKG  243 (458)
T ss_dssp             THHHHHHHHHHT-TSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHhc-CCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCC
Confidence            458999999998 569999999999999999999952           246789999999999997654 777776 456


Q ss_pred             ChHHHHHHHccCCHHHHHHHHHHHHHcccc--ccccchhhccCChHHHHHHc-ccCChhhHHHHHHHHHHhhc-CCCchH
Q 006494          445 AIPAIIEILQNGTNEARENSAAALFSLSML--DENRVMVGNLNGIPPLVNLL-RYGSIRGKKDAATALFNLSI-NQSNKS  520 (643)
Q Consensus       445 ~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~--~~~k~~i~~~g~i~~Lv~lL-~s~~~~~k~~A~~aL~nLs~-~~en~~  520 (643)
                      +|+.|+.+|++++.+++.+|+++|.+|+..  +++|..|.+.|+|++|+.+| .+++..+++.|+.+|+||+. +++++.
T Consensus       244 aIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~  323 (458)
T 3nmz_A          244 CMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKA  323 (458)
T ss_dssp             HHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             cHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence            699999999999999999999999999974  46899999999999999975 66788999999999999999 778999


Q ss_pred             HHH-hcCcHHHHHHHhccCCh----hhHHHHHHHHHHHhC----ChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHH
Q 006494          521 RAI-KAGIIPSLLKLLEDKAL----GMVDEALSILQLLAS----HPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVL  591 (643)
Q Consensus       521 ~iv-~~G~v~~Lv~lL~~~~~----~~~~~Al~iL~nLa~----~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L  591 (643)
                      .++ ..|+++.|+++|.+...    .+++.|+++|.||+.    +++++..+.+.|+++.|+.+|++++...+++|+++|
T Consensus       324 ~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL  403 (458)
T 3nmz_A          324 DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTL  403 (458)
T ss_dssp             HHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHH
T ss_pred             HHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHH
Confidence            998 69999999999987544    389999999999995    789999999999999999999999999999999999


Q ss_pred             HHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhhcc
Q 006494          592 LELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSKRE  640 (643)
Q Consensus       592 ~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~~~  640 (643)
                      ++|+.++++....+.+.|++++|+.++.++++++++.|...|++|....
T Consensus       404 ~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~  452 (458)
T 3nmz_A          404 WNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR  452 (458)
T ss_dssp             HHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            9999888999999999999999999999999999999999999998654

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.96  E-value=5e-28  Score=265.75  Aligned_cols=282  Identities=20%  Similarity=0.258  Sum_probs=247.1

Q ss_pred             hHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhc-CCCHHHHHHHHHHHHhcccChhhH
Q 006494          359 LIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLS-YPDSKIQEHTVTALLNLSLDETNK  437 (643)
Q Consensus       359 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~nLs~~~~~k  437 (643)
                      ..+.++.|++.|++++++++..|+..|++|+..++++|..+++.|+|+.|+.+|+ +++.++++.|+++|.||+.++++|
T Consensus        42 ~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~  121 (457)
T 1xm9_A           42 QLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELK  121 (457)
T ss_dssp             HTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTH
T ss_pred             HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhH
Confidence            5578999999999999999999999999999888999999999999999999999 889999999999999999999999


Q ss_pred             HHHHhcCChHHHHHHHc--------cC--------CHHHHHHHHHHHHHccccccccchhhcc-CChHHHHHHcccC---
Q 006494          438 RHIAREGAIPAIIEILQ--------NG--------TNEARENSAAALFSLSMLDENRVMVGNL-NGIPPLVNLLRYG---  497 (643)
Q Consensus       438 ~~i~~~g~i~~Lv~lL~--------~~--------~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~-g~i~~Lv~lL~s~---  497 (643)
                      ..+++ |++++|+.+|.        ++        +..+..+|+++|+||+..++++..+.+. |++++|+.+|+++   
T Consensus       122 ~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~  200 (457)
T 1xm9_A          122 EELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAA  200 (457)
T ss_dssp             HHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHH
T ss_pred             HHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccc
Confidence            99999 99999999993        33        3445569999999999888899999987 9999999888641   


Q ss_pred             --------------------------------------------------------------------------------
Q 006494          498 --------------------------------------------------------------------------------  497 (643)
Q Consensus       498 --------------------------------------------------------------------------------  497 (643)
                                                                                                      
T Consensus       201 ~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  280 (457)
T 1xm9_A          201 SRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLY  280 (457)
T ss_dssp             TCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGG
T ss_pred             cCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHh
Confidence                                                                                            


Q ss_pred             ----------------ChhhHHHHHHHHHHhhcCCCch-----HHHH-hcCcHHHHHHHhccCChhhHHHHHHHHHHHhC
Q 006494          498 ----------------SIRGKKDAATALFNLSINQSNK-----SRAI-KAGIIPSLLKLLEDKALGMVDEALSILQLLAS  555 (643)
Q Consensus       498 ----------------~~~~k~~A~~aL~nLs~~~en~-----~~iv-~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~  555 (643)
                                      ++..++.|+++|.||+......     ..++ ++|++|.|+++|.+++..++..|+++|.||+.
T Consensus       281 ~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~  360 (457)
T 1xm9_A          281 HSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR  360 (457)
T ss_dssp             SHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             CcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhc
Confidence                            1345566789999998755431     2233 58999999999999999999999999999999


Q ss_pred             ChhhHHHHHhcCcHHHHHHHHhcCC------hHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhC-CHHHHHH
Q 006494          556 HPEGRNEIGRLSFIETLVEIIKNGT------PKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCG-TNRGQRK  628 (643)
Q Consensus       556 ~~~~~~~i~~~g~i~~Lv~lL~~~s------~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g-~~~~k~~  628 (643)
                      ++..+..|. .|+++.|+++|.+++      ++....++.+|.++..++++....+.+.|+++.|+.++.++ +++++++
T Consensus       361 ~~~~~~~i~-~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~  439 (457)
T 1xm9_A          361 HPLLHRVMG-NQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEA  439 (457)
T ss_dssp             SGGGHHHHH-HHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CHHHHHHHH-HhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHH
Confidence            998887776 479999999998864      35677899999999999999999999999999999999999 9999999


Q ss_pred             HHHHHHHhhhccCC
Q 006494          629 ANSLLQHMSKREHI  642 (643)
Q Consensus       629 A~~lL~~l~~~~e~  642 (643)
                      |..+|.+++.+.++
T Consensus       440 A~~~L~~~~~~~~l  453 (457)
T 1xm9_A          440 ARLLLSDMWSSKEL  453 (457)
T ss_dssp             HHHHHHTTSSSTTC
T ss_pred             HHHHHHHHHcchhh
Confidence            99999999987765

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.95  E-value=3.6e-27  Score=270.48  Aligned_cols=280  Identities=16%  Similarity=0.135  Sum_probs=251.3

Q ss_pred             hHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhCh-----------------------------hhH---HHHHhhCChH
Q 006494          359 LIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENP-----------------------------DNR---ILIANNGGIR  406 (643)
Q Consensus       359 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~-----------------------------~~r---~~i~~~g~i~  406 (643)
                      +.+.++.|++.|++.+..+++.|++.|.+++...+                             ..+   ..++++|++|
T Consensus       419 d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp  498 (810)
T 3now_A          419 DKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITT  498 (810)
T ss_dssp             CHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHH
T ss_pred             ccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHH
Confidence            46899999999999999999999999999997442                             123   5678899999


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhh---c
Q 006494          407 PLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVG---N  483 (643)
Q Consensus       407 ~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~---~  483 (643)
                      .|+.+|+++++.+|+.|+++|.||+.+++++..+++.|++++|+.+|++++...+.+|+++|.+|+...+....+.   .
T Consensus       499 ~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~  578 (810)
T 3now_A          499 ALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRS  578 (810)
T ss_dssp             HHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhh
Confidence            9999999999999999999999999999999999999999999999999999999999999999986544333222   1


Q ss_pred             cCChHHHHHHcccC-ChhhHHHHHHHHHHhhcCC-CchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHH
Q 006494          484 LNGIPPLVNLLRYG-SIRGKKDAATALFNLSINQ-SNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRN  561 (643)
Q Consensus       484 ~g~i~~Lv~lL~s~-~~~~k~~A~~aL~nLs~~~-en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~  561 (643)
                      .|++++|+.+|.++ +...+..|+++|.||+..+ +++..++++|+++.|+.+|.+++..++..|+++|+||+.+++.+.
T Consensus       579 ~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~  658 (810)
T 3now_A          579 LDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIK  658 (810)
T ss_dssp             HHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHH
T ss_pred             hcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHH
Confidence            47999999999876 4455679999999999864 679999999999999999999889999999999999999999988


Q ss_pred             HHHh-cCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHH-cCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494          562 EIGR-LSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQ-YGVYEHLVEITRCGTNRGQRKANSLLQHMSK  638 (643)
Q Consensus       562 ~i~~-~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~-~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~  638 (643)
                      .++. .|+++.|+.++.+.+...|..|+++|.+|+.+++..++.+.+ .|++++|+.++.+++...++.|.+.|.++..
T Consensus       659 ~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~  737 (810)
T 3now_A          659 MFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMIN  737 (810)
T ss_dssp             HHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred             HHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHh
Confidence            8886 689999999999999999999999999999987888888888 8999999999999999999999999999865

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.95  E-value=6.2e-27  Score=260.23  Aligned_cols=281  Identities=21%  Similarity=0.195  Sum_probs=237.0

Q ss_pred             hHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhh-ChhhHHHHHhhCChHHHHHHhcC-CCHHHHHHHHHHHHhcccChhh
Q 006494          359 LIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKE-NPDNRILIANNGGIRPLVQLLSY-PDSKIQEHTVTALLNLSLDETN  436 (643)
Q Consensus       359 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~-~~~~r~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~nLs~~~~~  436 (643)
                      ..+.|+.||+.|.+++.+++..|+..|++|+.. ++++|..|++.|+|+.|+.+|++ .+.+++++|+.+|+||+.++++
T Consensus        88 ~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~  167 (584)
T 3l6x_A           88 KLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSI  167 (584)
T ss_dssp             HTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGG
T ss_pred             HcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchh
Confidence            457899999999999999999999999999975 69999999999999999999997 5789999999999999999999


Q ss_pred             HHHHHhcCChHHHHHHHc------------------cCCHHHHHHHHHHHHHcccccc-ccchhhcc-CChHHHHHHccc
Q 006494          437 KRHIAREGAIPAIIEILQ------------------NGTNEARENSAAALFSLSMLDE-NRVMVGNL-NGIPPLVNLLRY  496 (643)
Q Consensus       437 k~~i~~~g~i~~Lv~lL~------------------~~~~~~~~~Aa~~L~~Ls~~~~-~k~~i~~~-g~i~~Lv~lL~s  496 (643)
                      |..|++ +++++|+++|.                  ..+.+++.+|+++|+||+..++ +|..|.+. |+++.|+.++++
T Consensus       168 k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~  246 (584)
T 3l6x_A          168 KMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQA  246 (584)
T ss_dssp             HHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHH
T ss_pred             hHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHH
Confidence            999995 57999999872                  1257899999999999998764 47777663 445566665542


Q ss_pred             --------------------------------------------------------------------------CChhhH
Q 006494          497 --------------------------------------------------------------------------GSIRGK  502 (643)
Q Consensus       497 --------------------------------------------------------------------------~~~~~k  502 (643)
                                                                                                .+..++
T Consensus       247 ~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~  326 (584)
T 3l6x_A          247 EIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAIL  326 (584)
T ss_dssp             HHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHH
T ss_pred             hhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHH
Confidence                                                                                      234445


Q ss_pred             HHHHHHHHHhhcCCC-----chHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHh
Q 006494          503 KDAATALFNLSINQS-----NKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIK  577 (643)
Q Consensus       503 ~~A~~aL~nLs~~~e-----n~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~  577 (643)
                      +.|+.||.|||....     ++..+.+.|+++.|+++|.+++..+++.|+++|.||+.++..+..| ..|+++.||.+|.
T Consensus       327 E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~~g~ip~LV~LL~  405 (584)
T 3l6x_A          327 EASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI-GKHAIPNLVKNLP  405 (584)
T ss_dssp             HHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH-HHHHHHHHHHTSS
T ss_pred             HHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH-HhCCHHHHHHHhc
Confidence            566666666665331     2223344789999999999999999999999999999999888877 6799999999998


Q ss_pred             cC--------ChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhC--CHHHHHHHHHHHHHhhhccC
Q 006494          578 NG--------TPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCG--TNRGQRKANSLLQHMSKREH  641 (643)
Q Consensus       578 ~~--------s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g--~~~~k~~A~~lL~~l~~~~e  641 (643)
                      ++        ++.....|+.+|.+|+..++...+.+.+.|+++.|+.++.++  .+++++.|..+|.+|+.+.+
T Consensus       406 ~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~e  479 (584)
T 3l6x_A          406 GGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKE  479 (584)
T ss_dssp             SSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHH
T ss_pred             CCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHH
Confidence            76        467788999999999999999999999999999999999987  89999999999999987543

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.95  E-value=1.3e-26  Score=252.20  Aligned_cols=281  Identities=19%  Similarity=0.151  Sum_probs=243.7

Q ss_pred             HhHHHHHHHHHhhcC------------CCHHHHHHHHHHHHHhhhhChhhHHHHHhhCCh----------HHHHHHhcCC
Q 006494          358 ALIEEICSLIQNLSS------------SQLNIKRDSVMKIRMLSKENPDNRILIANNGGI----------RPLVQLLSYP  415 (643)
Q Consensus       358 ~~~~~i~~Lv~~L~s------------~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i----------~~Lv~lL~~~  415 (643)
                      ...+.+|.||+.|..            ++++.+.+|+++|.+++...++......+.|++          +.+++++.+.
T Consensus        67 ~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  146 (458)
T 3nmz_A           67 RQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAH  146 (458)
T ss_dssp             HHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhh
Confidence            356889999999985            337999999999999999888888887777777          6677777764


Q ss_pred             C--HH-----HH-------HHHHHHHHhcccChhhHHHHHhcCChHHHHHHHcc-----------CCHHHHHHHHHHHHH
Q 006494          416 D--SK-----IQ-------EHTVTALLNLSLDETNKRHIAREGAIPAIIEILQN-----------GTNEARENSAAALFS  470 (643)
Q Consensus       416 ~--~~-----~~-------~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~-----------~~~~~~~~Aa~~L~~  470 (643)
                      +  .+     ++       .+|+++|.|++.++++|..|.+.|++++|+.+|..           .++..+.+|+++|.+
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~n  226 (458)
T 3nmz_A          147 EPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTN  226 (458)
T ss_dssp             SSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred             ccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHH
Confidence            2  12     33       38999999999999999999999999999999952           236789999999999


Q ss_pred             cccccc-ccchhhc-cCChHHHHHHcccCChhhHHHHHHHHHHhhcC--CCchHHHHhcCcHHHHHHHhc-cCChhhHHH
Q 006494          471 LSMLDE-NRVMVGN-LNGIPPLVNLLRYGSIRGKKDAATALFNLSIN--QSNKSRAIKAGIIPSLLKLLE-DKALGMVDE  545 (643)
Q Consensus       471 Ls~~~~-~k~~i~~-~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~--~en~~~iv~~G~v~~Lv~lL~-~~~~~~~~~  545 (643)
                      |+..++ ++..+.. .|+|+.|+.+|++++..++..|+++|.||+..  .+++..+++.|++++|+++|. +.+..+++.
T Consensus       227 La~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~  306 (458)
T 3nmz_A          227 LTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKS  306 (458)
T ss_dssp             HHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHH
T ss_pred             HhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHH
Confidence            998776 6666754 56799999999999999999999999999984  468899999999999999864 467789999


Q ss_pred             HHHHHHHHhC-ChhhHHHHH-hcCcHHHHHHHHhcCCh----HHHHHHHHHHHHhcc---CCHHHHHHHHHcCcHHHHHH
Q 006494          546 ALSILQLLAS-HPEGRNEIG-RLSFIETLVEIIKNGTP----KNKECATSVLLELGL---NNSYFILAALQYGVYEHLVE  616 (643)
Q Consensus       546 Al~iL~nLa~-~~~~~~~i~-~~g~i~~Lv~lL~~~s~----~~ke~A~~~L~~L~~---~~~~~~~~~~~~g~i~~L~~  616 (643)
                      |+.+|+||+. +++++..|+ ..|+++.|+.+|.++++    ..++.|+++|.+|+.   .+++..+.+.+.|+++.|+.
T Consensus       307 A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~  386 (458)
T 3nmz_A          307 VLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQ  386 (458)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHH
Confidence            9999999999 778888998 68999999999988765    489999999999997   68888888999999999999


Q ss_pred             HHhhCCHHHHHHHHHHHHHhhh
Q 006494          617 ITRCGTNRGQRKANSLLQHMSK  638 (643)
Q Consensus       617 ll~~g~~~~k~~A~~lL~~l~~  638 (643)
                      ++.+++..+++.|.++|++|..
T Consensus       387 LL~~~~~~v~~~A~~aL~nLa~  408 (458)
T 3nmz_A          387 HLKSHSLTIVSNACGTLWNLSA  408 (458)
T ss_dssp             HSSCSCHHHHHHHHHHHHHHHS
T ss_pred             HHcCCChHHHHHHHHHHHHHHc
Confidence            9999999999999999999973

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.95  E-value=5.9e-27  Score=247.47  Aligned_cols=243  Identities=20%  Similarity=0.250  Sum_probs=218.9

Q ss_pred             hHHHHHHHHHhhcC-----------CCHHHHHHHHHHHHHhhhhChhhHHHHHh-hCChHHHHHHhcCCCHHHHHHHHHH
Q 006494          359 LIEEICSLIQNLSS-----------SQLNIKRDSVMKIRMLSKENPDNRILIAN-NGGIRPLVQLLSYPDSKIQEHTVTA  426 (643)
Q Consensus       359 ~~~~i~~Lv~~L~s-----------~~~~~~~~Al~~L~~La~~~~~~r~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~  426 (643)
                      +.+.++.|+..|.+           .+++.+..|++.|.+|+..++.+|..+.. .|+||.|+.+|++++.++++.|+.+
T Consensus        71 ~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~a  150 (354)
T 3nmw_A           71 ELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASV  150 (354)
T ss_dssp             HTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHH
Confidence            45789999999842           24678999999999999888888888864 5679999999999999999999999


Q ss_pred             HHhcccC--hhhHHHHHhcCChHHHHHHH-ccCCHHHHHHHHHHHHHccc-cccccchhh-ccCChHHHHHHcccCCh--
Q 006494          427 LLNLSLD--ETNKRHIAREGAIPAIIEIL-QNGTNEARENSAAALFSLSM-LDENRVMVG-NLNGIPPLVNLLRYGSI--  499 (643)
Q Consensus       427 L~nLs~~--~~~k~~i~~~g~i~~Lv~lL-~~~~~~~~~~Aa~~L~~Ls~-~~~~k~~i~-~~g~i~~Lv~lL~s~~~--  499 (643)
                      |.||+..  +.+|..+++.|++++|+++| ++++.++++.|+++|++|+. .+++|..|+ ..|+++.|+.+|.+++.  
T Consensus       151 L~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~  230 (354)
T 3nmw_A          151 LRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTN  230 (354)
T ss_dssp             HHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSS
T ss_pred             HHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcc
Confidence            9999974  67899999999999999975 56789999999999999998 667898998 68999999999987754  


Q ss_pred             --hhHHHHHHHHHHhhc----CCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhC-ChhhHHHHHhcCcHHHH
Q 006494          500 --RGKKDAATALFNLSI----NQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLAS-HPEGRNEIGRLSFIETL  572 (643)
Q Consensus       500 --~~k~~A~~aL~nLs~----~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~-~~~~~~~i~~~g~i~~L  572 (643)
                        .+++.|+.+|.||+.    +++++..+++.|+++.|+++|.+++..+++.|+++|.||+. +++.+..+++.|+++.|
T Consensus       231 ~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~L  310 (354)
T 3nmw_A          231 TLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSML  310 (354)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHH
Confidence              489999999999996    78889999999999999999999888999999999999995 68999999999999999


Q ss_pred             HHHHhcCChHHHHHHHHHHHHhccCCHHH
Q 006494          573 VEIIKNGTPKNKECATSVLLELGLNNSYF  601 (643)
Q Consensus       573 v~lL~~~s~~~ke~A~~~L~~L~~~~~~~  601 (643)
                      +++|+++++..++.|+.+|.+|+.+.+..
T Consensus       311 v~LL~s~~~~i~~~A~~aL~nL~~~~~~~  339 (354)
T 3nmw_A          311 KNLIHSKHKMIAMGSAAALRNLMANRPAK  339 (354)
T ss_dssp             HTTTTCSSHHHHHHHHHHHHHHHTTCCGG
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHcCCHHH
Confidence            99999999999999999999999987653

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.94  E-value=8e-26  Score=251.76  Aligned_cols=280  Identities=19%  Similarity=0.226  Sum_probs=252.6

Q ss_pred             hHHHHHHHHHhhcC-CCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccC-hhh
Q 006494          359 LIEEICSLIQNLSS-SQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLD-ETN  436 (643)
Q Consensus       359 ~~~~i~~Lv~~L~s-~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~  436 (643)
                      ..|.+|.||+.|++ +++++|..|++.|.+++..+++++..+++.|+||.|+.+|++++.++++.|+++|.||+.+ +..
T Consensus        98 ~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~  177 (510)
T 3ul1_B           98 RAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF  177 (510)
T ss_dssp             HTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence            45789999999974 5689999999999999999999999999999999999999999999999999999999976 577


Q ss_pred             HHHHHhcCChHHHHHHHccCC-----HHHHHHHHHHHHHccccccccchhhc-cCChHHHHHHcccCChhhHHHHHHHHH
Q 006494          437 KRHIAREGAIPAIIEILQNGT-----NEARENSAAALFSLSMLDENRVMVGN-LNGIPPLVNLLRYGSIRGKKDAATALF  510 (643)
Q Consensus       437 k~~i~~~g~i~~Lv~lL~~~~-----~~~~~~Aa~~L~~Ls~~~~~k~~i~~-~g~i~~Lv~lL~s~~~~~k~~A~~aL~  510 (643)
                      +..+.+.|++++|+.+|...+     ...+.++++++.+++........+.. .|+++.|+.++.+++..++..|+++|.
T Consensus       178 r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~  257 (510)
T 3ul1_B          178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAIS  257 (510)
T ss_dssp             HHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             HHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            888889999999999998653     45678899999999987665554444 789999999999999999999999999


Q ss_pred             HhhcCCCch-HHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC-hhhHHHHHhcCcHHHHHHHHhcCChHHHHHHH
Q 006494          511 NLSINQSNK-SRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH-PEGRNEIGRLSFIETLVEIIKNGTPKNKECAT  588 (643)
Q Consensus       511 nLs~~~en~-~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~  588 (643)
                      +|+....++ ..+++.|+++.|+++|.+.+..++..|+.+|.|++.. +..+..+.+.|+++.|+.+|.+.++..++.|+
T Consensus       258 ~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~  337 (510)
T 3ul1_B          258 YLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEAT  337 (510)
T ss_dssp             HHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHH
T ss_pred             HHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHH
Confidence            999876654 4566799999999999999999999999999999886 56778888999999999999999999999999


Q ss_pred             HHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494          589 SVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK  638 (643)
Q Consensus       589 ~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~  638 (643)
                      ++|.+|+.+++.....+.+.|+++.|+.++.+++..+++.|.++|.++..
T Consensus       338 ~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~  387 (510)
T 3ul1_B          338 WTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTS  387 (510)
T ss_dssp             HHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999999999864

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.94  E-value=2.1e-25  Score=249.46  Aligned_cols=280  Identities=18%  Similarity=0.214  Sum_probs=253.7

Q ss_pred             hHHHHHHHHHhhc-CCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccC-hhh
Q 006494          359 LIEEICSLIQNLS-SSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLD-ETN  436 (643)
Q Consensus       359 ~~~~i~~Lv~~L~-s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~  436 (643)
                      ..+.++.||+.|. +.+++++..|++.|.+++.+++.++..+++.|+|+.|+.+|.+++.++++.|+++|.||+.+ +.+
T Consensus       117 ~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~  196 (529)
T 3tpo_A          117 RAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAF  196 (529)
T ss_dssp             HTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHH
Confidence            5579999999997 45689999999999999999999999999999999999999999999999999999999975 678


Q ss_pred             HHHHHhcCChHHHHHHHccCC-----HHHHHHHHHHHHHccccccccchhhc-cCChHHHHHHcccCChhhHHHHHHHHH
Q 006494          437 KRHIAREGAIPAIIEILQNGT-----NEARENSAAALFSLSMLDENRVMVGN-LNGIPPLVNLLRYGSIRGKKDAATALF  510 (643)
Q Consensus       437 k~~i~~~g~i~~Lv~lL~~~~-----~~~~~~Aa~~L~~Ls~~~~~k~~i~~-~g~i~~Lv~lL~s~~~~~k~~A~~aL~  510 (643)
                      +..+.+.|++++|+.+|..++     .....+++++|.+++........+.. .|+++.|+.++.++++.++.+|+++|.
T Consensus       197 r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~  276 (529)
T 3tpo_A          197 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAIS  276 (529)
T ss_dssp             HHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence            889999999999999998643     45678899999999987665544443 789999999999999999999999999


Q ss_pred             HhhcCCCc-hHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC-hhhHHHHHhcCcHHHHHHHHhcCChHHHHHHH
Q 006494          511 NLSINQSN-KSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH-PEGRNEIGRLSFIETLVEIIKNGTPKNKECAT  588 (643)
Q Consensus       511 nLs~~~en-~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~  588 (643)
                      +|+...++ ...+++.|+++.|+++|.+++..++..|+.+|.|++.+ +..+..+.+.|+++.|+.+|.+.++..+..|+
T Consensus       277 ~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~  356 (529)
T 3tpo_A          277 YLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEAT  356 (529)
T ss_dssp             HHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHH
T ss_pred             HhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHH
Confidence            99987665 45566899999999999999999999999999999986 66788888999999999999999999999999


Q ss_pred             HHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494          589 SVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK  638 (643)
Q Consensus       589 ~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~  638 (643)
                      ++|.+|+.+++.....+.+.|+++.|+.++.+++..+++.|.++|.++..
T Consensus       357 ~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~  406 (529)
T 3tpo_A          357 WTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTS  406 (529)
T ss_dssp             HHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999999999864

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.94  E-value=8.4e-26  Score=259.13  Aligned_cols=281  Identities=15%  Similarity=0.145  Sum_probs=251.8

Q ss_pred             hHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHH
Q 006494          359 LIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKR  438 (643)
Q Consensus       359 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~  438 (643)
                      +.+.++.|++.|+++++.++..|++.|.+++ .++++|..++++|++++|+.+|.+++...++.|+++|.||+.+.+...
T Consensus       493 eaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA-~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~  571 (810)
T 3now_A          493 NEGITTALCALAKTESHNSQELIARVLNAVC-GLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEV  571 (810)
T ss_dssp             HTTHHHHHHHHHTCCCHHHHHHHHHHHHHHH-TSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             HCcCHHHHHHHHcCCCHHHHHHHHHHHHHHc-CCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhh
Confidence            4478999999999999999999999999999 578899999999999999999999999999999999999986433322


Q ss_pred             HH---HhcCChHHHHHHHccC-CHHHHHHHHHHHHHcccc-ccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhh
Q 006494          439 HI---AREGAIPAIIEILQNG-TNEARENSAAALFSLSML-DENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLS  513 (643)
Q Consensus       439 ~i---~~~g~i~~Lv~lL~~~-~~~~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs  513 (643)
                      .+   ...|++++|+.+|.++ +...+..|+.+|.||+.. ++++..|.+.|+++.|+.++.++++.+++.|+.+|.||+
T Consensus       572 ~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa  651 (810)
T 3now_A          572 SFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLV  651 (810)
T ss_dssp             HTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHT
T ss_pred             hhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            22   1246999999999866 455567899999999976 468889999999999999999999999999999999999


Q ss_pred             cCCCchHHHHh-cCcHHHHHHHhccCChhhHHHHHHHHHHHhC-ChhhHHHHHh-cCcHHHHHHHHhcCChHHHHHHHHH
Q 006494          514 INQSNKSRAIK-AGIIPSLLKLLEDKALGMVDEALSILQLLAS-HPEGRNEIGR-LSFIETLVEIIKNGTPKNKECATSV  590 (643)
Q Consensus       514 ~~~en~~~iv~-~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~-~~~~~~~i~~-~g~i~~Lv~lL~~~s~~~ke~A~~~  590 (643)
                      .+++.+..+++ .|+++.|+.++.+.+..++..|+++|+||+. ++.....+++ .|+++.|+.++.+++...+..|+++
T Consensus       652 ~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~a  731 (810)
T 3now_A          652 MSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVI  731 (810)
T ss_dssp             TSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred             CChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHH
Confidence            99999888886 7999999999999888999999999999999 6788888888 8999999999999999999999999


Q ss_pred             HHHhccCCHHHHHHHHHcCcHHHHHHHHhhC---CHHHHHHHHHHHHHhhhcc
Q 006494          591 LLELGLNNSYFILAALQYGVYEHLVEITRCG---TNRGQRKANSLLQHMSKRE  640 (643)
Q Consensus       591 L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g---~~~~k~~A~~lL~~l~~~~  640 (643)
                      |.+++.++.+....+.+.|++++|+.++...   +.++.+.|...|.++-++.
T Consensus       732 L~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g  784 (810)
T 3now_A          732 ILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYR  784 (810)
T ss_dssp             HHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCC
Confidence            9999998888889999999999999998644   7899999999999987654

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.94  E-value=3.9e-25  Score=246.21  Aligned_cols=277  Identities=18%  Similarity=0.198  Sum_probs=245.2

Q ss_pred             HHHHHHHhhcCCCHHHHHHHHHHHHHhh-hhChhhHHHHHhhCChHHHHHHhcCC-CHHHHHHHHHHHHhccc-ChhhHH
Q 006494          362 EICSLIQNLSSSQLNIKRDSVMKIRMLS-KENPDNRILIANNGGIRPLVQLLSYP-DSKIQEHTVTALLNLSL-DETNKR  438 (643)
Q Consensus       362 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La-~~~~~~r~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~nLs~-~~~~k~  438 (643)
                      .++.+|+.++|++.+.|..|+..+|.+. ++.......+++.|+||.|+.+|++. ++.+|..|+++|.|++. +++++.
T Consensus        58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~  137 (510)
T 3ul1_B           58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK  137 (510)
T ss_dssp             CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            5889999999999999999999999754 43333467788999999999999754 58999999999999975 567888


Q ss_pred             HHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccc-cccchhhccCChHHHHHHcccCC-----hhhHHHHHHHHHHh
Q 006494          439 HIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLD-ENRVMVGNLNGIPPLVNLLRYGS-----IRGKKDAATALFNL  512 (643)
Q Consensus       439 ~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~s~~-----~~~k~~A~~aL~nL  512 (643)
                      .+++.|++|.|+.+|++++.++++.|+++|.+|+.+. +.+..+.+.|++++|+.++.+.+     ....+.++++|.|+
T Consensus       138 ~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl  217 (510)
T 3ul1_B          138 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL  217 (510)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999764 57888899999999999998654     34678899999999


Q ss_pred             hcCCCchHHH-HhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCCh-hhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHH
Q 006494          513 SINQSNKSRA-IKAGIIPSLLKLLEDKALGMVDEALSILQLLASHP-EGRNEIGRLSFIETLVEIIKNGTPKNKECATSV  590 (643)
Q Consensus       513 s~~~en~~~i-v~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~-~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~  590 (643)
                      +.+......+ ...|++|.|+++|.+.+..++..|+++|.+|+.++ +....+.+.|+++.|+.+|.+.++..+..|+.+
T Consensus       218 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~a  297 (510)
T 3ul1_B          218 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA  297 (510)
T ss_dssp             HCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHH
T ss_pred             hhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHH
Confidence            9977665444 34789999999999999999999999999999975 456677788999999999999999999999999


Q ss_pred             HHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494          591 LLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK  638 (643)
Q Consensus       591 L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~  638 (643)
                      |.+++.+++.....+.+.|+++.|+.++.++++.+++.|.++|.+|..
T Consensus       298 L~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a  345 (510)
T 3ul1_B          298 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITA  345 (510)
T ss_dssp             HHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTT
T ss_pred             HHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence            999999999999999999999999999999999999999999999975

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.93  E-value=3.2e-24  Score=239.64  Aligned_cols=281  Identities=17%  Similarity=0.205  Sum_probs=256.5

Q ss_pred             hHHHHHHHHHhhcCCC-HHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccC-hhh
Q 006494          359 LIEEICSLIQNLSSSQ-LNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLD-ETN  436 (643)
Q Consensus       359 ~~~~i~~Lv~~L~s~~-~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~  436 (643)
                      ..+.++.|++.|.+.+ +.++..|++.|.+++..+++++..+.+.|+++.|+.+|.+++..+++.|+++|.||+.+ +.+
T Consensus       115 ~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~  194 (528)
T 4b8j_A          115 QSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKC  194 (528)
T ss_dssp             HTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhh
Confidence            3467999999999876 99999999999999988899999999999999999999999999999999999999965 567


Q ss_pred             HHHHHhcCChHHHHHHH-ccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcC
Q 006494          437 KRHIAREGAIPAIIEIL-QNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSIN  515 (643)
Q Consensus       437 k~~i~~~g~i~~Lv~lL-~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~  515 (643)
                      +..+...|++++|+.+| .+.+..++..++++|.+|+............|+++.|+.+|.+++..++..|+++|.+|+..
T Consensus       195 ~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~  274 (528)
T 4b8j_A          195 RDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDG  274 (528)
T ss_dssp             HHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcC
Confidence            88888999999999999 56689999999999999998765555566689999999999999999999999999999987


Q ss_pred             CCch-HHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC-hhhHHHHHhcCcHHHHHHHHhcC-ChHHHHHHHHHHH
Q 006494          516 QSNK-SRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH-PEGRNEIGRLSFIETLVEIIKNG-TPKNKECATSVLL  592 (643)
Q Consensus       516 ~en~-~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~-s~~~ke~A~~~L~  592 (643)
                      .+++ ..+++.|+++.|+.+|.+++..++..|+.+|.||+.. +.....+.+.|+++.|+.+|.++ ++..+..|+++|.
T Consensus       275 ~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~  354 (528)
T 4b8j_A          275 TNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTIS  354 (528)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence            6654 5777899999999999998899999999999999995 66788888899999999999998 8999999999999


Q ss_pred             HhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhhc
Q 006494          593 ELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSKR  639 (643)
Q Consensus       593 ~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~~  639 (643)
                      +|+.+++.....+.+.|+++.|+.++.++++.+++.|..+|.++...
T Consensus       355 nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~  401 (528)
T 4b8j_A          355 NITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSG  401 (528)
T ss_dssp             HHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence            99998888888888999999999999999999999999999998754

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.93  E-value=1.1e-24  Score=218.13  Aligned_cols=238  Identities=22%  Similarity=0.301  Sum_probs=222.7

Q ss_pred             HHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccC-hhhHHHH
Q 006494          362 EICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLD-ETNKRHI  440 (643)
Q Consensus       362 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~k~~i  440 (643)
                      .++.|++.|.+++++++..|+..|.+++..+++++..+.+.|+++.|+.+|++++.+++..|+.+|.|++.+ +.++..+
T Consensus         3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~   82 (252)
T 4hxt_A            3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI   82 (252)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence            689999999999999999999999999988888999999999999999999999999999999999999987 8889999


Q ss_pred             HhcCChHHHHHHHccCCHHHHHHHHHHHHHcc-ccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCC-c
Q 006494          441 AREGAIPAIIEILQNGTNEARENSAAALFSLS-MLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQS-N  518 (643)
Q Consensus       441 ~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls-~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~e-n  518 (643)
                      .+.|+++.|+.+|++++++++..|+++|.+|+ ..++++..+.+.|+++.|+.+++++++.++..|+.+|.||+...+ +
T Consensus        83 ~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~  162 (252)
T 4hxt_A           83 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA  162 (252)
T ss_dssp             HHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence            99999999999999999999999999999999 566788899999999999999999999999999999999998544 5


Q ss_pred             hHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC-hhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccC
Q 006494          519 KSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH-PEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLN  597 (643)
Q Consensus       519 ~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~  597 (643)
                      +..+++.|+++.|+++|.++++.++..|+.+|.+|+.. +..+..+.+.|+++.|++++.++++..++.|+.+|.+|+..
T Consensus       163 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  242 (252)
T 4hxt_A          163 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSG  242 (252)
T ss_dssp             HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcC
Confidence            67888999999999999998899999999999999984 77888899999999999999999999999999999999976


Q ss_pred             CH
Q 006494          598 NS  599 (643)
Q Consensus       598 ~~  599 (643)
                      .+
T Consensus       243 ~~  244 (252)
T 4hxt_A          243 GW  244 (252)
T ss_dssp             CB
T ss_pred             CC
Confidence            53

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.93  E-value=1.8e-24  Score=216.55  Aligned_cols=238  Identities=23%  Similarity=0.279  Sum_probs=222.7

Q ss_pred             CChHHHHHHhcCCCHHHHHHHHHHHHhcccCh-hhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHcccc-ccccch
Q 006494          403 GGIRPLVQLLSYPDSKIQEHTVTALLNLSLDE-TNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSML-DENRVM  480 (643)
Q Consensus       403 g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~-~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~-~~~k~~  480 (643)
                      |+++.|+.+|.+++++++..|+.+|.+++.++ +++..+.+.|+++.|+.+|++++.+++..|+.+|.+|+.. ++++..
T Consensus         2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~   81 (252)
T 4hxt_A            2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA   81 (252)
T ss_dssp             CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence            67899999999999999999999999998655 5888999999999999999999999999999999999987 678999


Q ss_pred             hhccCChHHHHHHcccCChhhHHHHHHHHHHhh-cCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC-hh
Q 006494          481 VGNLNGIPPLVNLLRYGSIRGKKDAATALFNLS-INQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH-PE  558 (643)
Q Consensus       481 i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs-~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~-~~  558 (643)
                      +.+.|+++.|+.+++++++.++..|+.+|.||+ .+++++..+++.|+++.|+++|.++++.++..|+++|.+|+.. +.
T Consensus        82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~  161 (252)
T 4hxt_A           82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE  161 (252)
T ss_dssp             HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence            999999999999999999999999999999999 5677899999999999999999998999999999999999986 56


Q ss_pred             hHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494          559 GRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK  638 (643)
Q Consensus       559 ~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~  638 (643)
                      .+..+.+.|+++.|+.++.+.++..+..|+.+|.+++.+++.....+.+.|+++.|+.++.++++.+++.|..+|.+|..
T Consensus       162 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  241 (252)
T 4hxt_A          162 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS  241 (252)
T ss_dssp             HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence            66888889999999999999999999999999999999889888889999999999999999999999999999999987


Q ss_pred             cc
Q 006494          639 RE  640 (643)
Q Consensus       639 ~~  640 (643)
                      ..
T Consensus       242 ~~  243 (252)
T 4hxt_A          242 GG  243 (252)
T ss_dssp             TC
T ss_pred             CC
Confidence            54

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.93  E-value=6.5e-24  Score=237.12  Aligned_cols=278  Identities=17%  Similarity=0.201  Sum_probs=252.7

Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhCh-hhHHHHHhhCChHHHHHHhcCCC-HHHHHHHHHHHHhcccC-hhhH
Q 006494          361 EEICSLIQNLSSSQLNIKRDSVMKIRMLSKENP-DNRILIANNGGIRPLVQLLSYPD-SKIQEHTVTALLNLSLD-ETNK  437 (643)
Q Consensus       361 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~-~~r~~i~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~nLs~~-~~~k  437 (643)
                      ..++.|++.|.+++++.+..|+..|+.++.... .....+.+.|+++.|+.+|.+++ +.++..|+++|.|++.+ ++++
T Consensus        74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~  153 (528)
T 4b8j_A           74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT  153 (528)
T ss_dssp             -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence            468999999999999999999999999865544 66788889999999999999886 99999999999999975 7888


Q ss_pred             HHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccc-cccchhhccCChHHHHHHc-ccCChhhHHHHHHHHHHhhcC
Q 006494          438 RHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLD-ENRVMVGNLNGIPPLVNLL-RYGSIRGKKDAATALFNLSIN  515 (643)
Q Consensus       438 ~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL-~s~~~~~k~~A~~aL~nLs~~  515 (643)
                      ..+++.|+++.|+.+|++++..++..|+++|.+|+... .++..+...|++++|+.+| .+.+..++..|+++|.+|+..
T Consensus       154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~  233 (528)
T 4b8j_A          154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG  233 (528)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred             HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence            88899999999999999999999999999999998664 4788888899999999999 566889999999999999998


Q ss_pred             CCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhh-HHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHh
Q 006494          516 QSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEG-RNEIGRLSFIETLVEIIKNGTPKNKECATSVLLEL  594 (643)
Q Consensus       516 ~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~-~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L  594 (643)
                      .++.......|+++.|+.+|.+.+..++..|+++|.+|+..... ...+.+.|+++.|+.+|.+.++..+..|+.+|.+|
T Consensus       234 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl  313 (528)
T 4b8j_A          234 KPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNI  313 (528)
T ss_dssp             SSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHH
Confidence            76666667799999999999999999999999999999988544 46777889999999999999999999999999999


Q ss_pred             ccCCHHHHHHHHHcCcHHHHHHHHhhC-CHHHHHHHHHHHHHhhh
Q 006494          595 GLNNSYFILAALQYGVYEHLVEITRCG-TNRGQRKANSLLQHMSK  638 (643)
Q Consensus       595 ~~~~~~~~~~~~~~g~i~~L~~ll~~g-~~~~k~~A~~lL~~l~~  638 (643)
                      +.+++.....+.+.|+++.|+.++.++ ++.+++.|.++|.+|..
T Consensus       314 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~  358 (528)
T 4b8j_A          314 VTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITA  358 (528)
T ss_dssp             TTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHC
Confidence            999988888889999999999999999 99999999999999975

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.93  E-value=9.3e-25  Score=219.46  Aligned_cols=236  Identities=23%  Similarity=0.316  Sum_probs=217.8

Q ss_pred             HHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhccc-ChhhHHHH
Q 006494          362 EICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSL-DETNKRHI  440 (643)
Q Consensus       362 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~k~~i  440 (643)
                      ..+.++..|.+++++++..|+..|+++...++.++..+.+.|+++.|+.+|.+++++++..|+.+|.|++. +++++..+
T Consensus        13 ~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i   92 (252)
T 4db8_A           13 ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV   92 (252)
T ss_dssp             SHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             hHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            58889999999999999999999977665677888899999999999999999999999999999999997 68899999


Q ss_pred             HhcCChHHHHHHHccCCHHHHHHHHHHHHHcccccccc-chhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCC-Cc
Q 006494          441 AREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENR-VMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQ-SN  518 (643)
Q Consensus       441 ~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k-~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~-en  518 (643)
                      .+.|+++.|+.+|++++++++..|+++|.+|+..+.++ ..+.+.|+++.|+.+|.+++..++..|+.+|.||+... ++
T Consensus        93 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~  172 (252)
T 4db8_A           93 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ  172 (252)
T ss_dssp             HHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHH
Confidence            99999999999999999999999999999999988888 88889999999999999999999999999999999854 56


Q ss_pred             hHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC-hhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccC
Q 006494          519 KSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH-PEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLN  597 (643)
Q Consensus       519 ~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~  597 (643)
                      +..+++.|+++.|+++|.++++.++..|+++|.+|+.. ++.+..+.+.|+++.|+.++.++++..++.|+.+|.+|+.+
T Consensus       173 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~~  252 (252)
T 4db8_A          173 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH  252 (252)
T ss_dssp             HHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC--
T ss_pred             HHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhcC
Confidence            77888999999999999998999999999999999964 77888899999999999999999999999999999999863

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.92  E-value=3.5e-24  Score=239.65  Aligned_cols=280  Identities=19%  Similarity=0.219  Sum_probs=250.2

Q ss_pred             hHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCC-----HHHHHHHHHHHHhcccC
Q 006494          359 LIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPD-----SKIQEHTVTALLNLSLD  433 (643)
Q Consensus       359 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~-----~~~~~~a~~~L~nLs~~  433 (643)
                      ..+.++.|+..|.+++.+++..|++.|.+++..++.+|..+.+.|++++|+.+|...+     ...+..++.+|.|++.+
T Consensus       160 ~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~  239 (529)
T 3tpo_A          160 DGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRN  239 (529)
T ss_dssp             HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCC
T ss_pred             HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhc
Confidence            4578999999999999999999999999999989999999999999999999998764     34678899999999876


Q ss_pred             hhhHHH-HHhcCChHHHHHHHccCCHHHHHHHHHHHHHcccccc-ccchhhccCChHHHHHHcccCChhhHHHHHHHHHH
Q 006494          434 ETNKRH-IAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDE-NRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFN  511 (643)
Q Consensus       434 ~~~k~~-i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~-~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~n  511 (643)
                      ...... ....|+++.|+.+|.+++++++..|+++|.+|+..+. ....+...|+++.|+.+|.+.+..++..|+.+|.|
T Consensus       240 ~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~n  319 (529)
T 3tpo_A          240 KNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN  319 (529)
T ss_dssp             CTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred             ccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHH
Confidence            644433 3356789999999999999999999999999997665 45566779999999999999999999999999999


Q ss_pred             hhcC-CCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC-hhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHH
Q 006494          512 LSIN-QSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH-PEGRNEIGRLSFIETLVEIIKNGTPKNKECATS  589 (643)
Q Consensus       512 Ls~~-~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~  589 (643)
                      |+.. ++++..+++.|+++.|+.+|.+++..++..|+++|.||+.+ +..+..+.+.|+++.|+.++.+++...+..|++
T Consensus       320 l~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~  399 (529)
T 3tpo_A          320 IVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAW  399 (529)
T ss_dssp             HTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHH
T ss_pred             HHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHH
Confidence            9874 45678888999999999999999999999999999999986 677888889999999999999999999999999


Q ss_pred             HHHHhccC-CHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494          590 VLLELGLN-NSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK  638 (643)
Q Consensus       590 ~L~~L~~~-~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~  638 (643)
                      +|.+++.+ +.+....+.+.|++++|+.++.+.++++...+...|.++.+
T Consensus       400 aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~  449 (529)
T 3tpo_A          400 AITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ  449 (529)
T ss_dssp             HHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            99999874 56777888899999999999999999999999999998864

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.92  E-value=2.5e-23  Score=232.65  Aligned_cols=281  Identities=14%  Similarity=0.127  Sum_probs=255.9

Q ss_pred             hHHHHHHHHHhhcCC-CHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccC-hhh
Q 006494          359 LIEEICSLIQNLSSS-QLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLD-ETN  436 (643)
Q Consensus       359 ~~~~i~~Lv~~L~s~-~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~  436 (643)
                      ..+.++.|++.|.+. ++.++..|++.|.+++..++.++..+.+.|+++.|+.+|.++++.+++.|+++|.|++.+ +.+
T Consensus       128 ~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~  207 (530)
T 1wa5_B          128 QAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY  207 (530)
T ss_dssp             HTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccc
Confidence            346799999999987 899999999999999988888999999999999999999999999999999999999976 578


Q ss_pred             HHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccc-cccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcC
Q 006494          437 KRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLD-ENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSIN  515 (643)
Q Consensus       437 k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~  515 (643)
                      +..+...|+++.|+.+|.+.+..++..|+++|.+|+... .........++++.|+.+|.++++.++..|+++|.+|+..
T Consensus       208 ~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~  287 (530)
T 1wa5_B          208 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG  287 (530)
T ss_dssp             HHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS
T ss_pred             hHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence            888889999999999999999999999999999999765 4555566689999999999999999999999999999975


Q ss_pred             C-CchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC-hhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHH
Q 006494          516 Q-SNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH-PEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLE  593 (643)
Q Consensus       516 ~-en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~  593 (643)
                      . +....+++.|+++.|+.+|.+.+..++..|+.+|.+|+.. +.....+.+.|+++.|+.+|.++++..+..|+.+|.+
T Consensus       288 ~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~  367 (530)
T 1wa5_B          288 PQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISN  367 (530)
T ss_dssp             CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            4 4577788899999999999988889999999999999986 5667778888999999999999999999999999999


Q ss_pred             hccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhhc
Q 006494          594 LGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSKR  639 (643)
Q Consensus       594 L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~~  639 (643)
                      ++.+++.....+.+.|+++.|+.++.++++.++..|.++|.+|...
T Consensus       368 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~  413 (530)
T 1wa5_B          368 ITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSG  413 (530)
T ss_dssp             HTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence            9998888888888899999999999999999999999999999753

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.92  E-value=4.1e-24  Score=214.77  Aligned_cols=236  Identities=20%  Similarity=0.244  Sum_probs=219.5

Q ss_pred             CChHHHHHHhcCCCHHHHHHHHHHHHhc-ccChhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccc-cccccch
Q 006494          403 GGIRPLVQLLSYPDSKIQEHTVTALLNL-SLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSM-LDENRVM  480 (643)
Q Consensus       403 g~i~~Lv~lL~~~~~~~~~~a~~~L~nL-s~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~-~~~~k~~  480 (643)
                      ...+.++..|.++++++|..|+.+|.++ +.++.++..+.+.|+++.|+.+|++++++++..|+++|.+|+. .++++..
T Consensus        12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~   91 (252)
T 4db8_A           12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA   91 (252)
T ss_dssp             CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            4678899999999999999999999764 4567788889999999999999999999999999999999997 5678999


Q ss_pred             hhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCch-HHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC-hh
Q 006494          481 VGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNK-SRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH-PE  558 (643)
Q Consensus       481 i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~-~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~-~~  558 (643)
                      +.+.|+++.|+.+|+++++.++..|+.+|.||+...+++ ..+++.|+++.|+++|.+++..++..|+++|.+|+.. ++
T Consensus        92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~  171 (252)
T 4db8_A           92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE  171 (252)
T ss_dssp             HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence            999999999999999999999999999999999999888 8899999999999999998999999999999999986 67


Q ss_pred             hHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494          559 GRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK  638 (643)
Q Consensus       559 ~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~  638 (643)
                      .+..+.+.|+++.|+.++.++++..++.|+.+|.+++.+++.....+.+.|+++.|+.++.++++.+++.|..+|.+|..
T Consensus       172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~  251 (252)
T 4db8_A          172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  251 (252)
T ss_dssp             HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred             HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence            77888889999999999999999999999999999999999888889999999999999999999999999999999864

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.92  E-value=1.3e-22  Score=221.02  Aligned_cols=277  Identities=17%  Similarity=0.182  Sum_probs=250.0

Q ss_pred             HHHHHHHHhhcCC-CHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccC-hhhHH
Q 006494          361 EEICSLIQNLSSS-QLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLD-ETNKR  438 (643)
Q Consensus       361 ~~i~~Lv~~L~s~-~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~k~  438 (643)
                      +.++.|++.|.+. ++.++..|++.|.+++..++++...+.+.|+++.|+.+|+++++.+++.|+.+|.|++.+ +.++.
T Consensus        64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~  143 (450)
T 2jdq_A           64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD  143 (450)
T ss_dssp             THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence            6899999999988 899999999999999987888888888999999999999999999999999999999976 46788


Q ss_pred             HHHhcCChHHHHHHHcc-CCHHHHHHHHHHHHHccccc--cccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcC
Q 006494          439 HIAREGAIPAIIEILQN-GTNEARENSAAALFSLSMLD--ENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSIN  515 (643)
Q Consensus       439 ~i~~~g~i~~Lv~lL~~-~~~~~~~~Aa~~L~~Ls~~~--~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~  515 (643)
                      .+.+.|+++.|+.+|++ .+..++..|+++|.+|+...  ..+..+. .++++.|+.++.+++..++..|+++|.+|+..
T Consensus       144 ~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~  222 (450)
T 2jdq_A          144 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDG  222 (450)
T ss_dssp             HHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSS
T ss_pred             HHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCC
Confidence            88899999999999996 68999999999999998654  2333333 78999999999999999999999999999985


Q ss_pred             C-CchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC-hhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHH
Q 006494          516 Q-SNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH-PEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLE  593 (643)
Q Consensus       516 ~-en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~  593 (643)
                      . +++..++..|+++.|+.+|.+++..++..|+.+|.+|+.+ +..+..+.+.|+++.|+.++.+.++..+..|+.+|.+
T Consensus       223 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~  302 (450)
T 2jdq_A          223 PNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISN  302 (450)
T ss_dssp             SHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            4 5677788899999999999988899999999999999987 4556677888999999999999999999999999999


Q ss_pred             hccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494          594 LGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK  638 (643)
Q Consensus       594 L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~  638 (643)
                      ++.+++.....+.+.|+++.|+.++.++++++++.|..+|.++..
T Consensus       303 l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~  347 (450)
T 2jdq_A          303 ITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATS  347 (450)
T ss_dssp             HTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHc
Confidence            999888888888889999999999999999999999999999864

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.92  E-value=7.7e-23  Score=228.63  Aligned_cols=278  Identities=17%  Similarity=0.208  Sum_probs=252.2

Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhh-ChhhHHHHHhhCChHHHHHHhcCC-CHHHHHHHHHHHHhcccC-hhhH
Q 006494          361 EEICSLIQNLSSSQLNIKRDSVMKIRMLSKE-NPDNRILIANNGGIRPLVQLLSYP-DSKIQEHTVTALLNLSLD-ETNK  437 (643)
Q Consensus       361 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~-~~~~r~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~nLs~~-~~~k  437 (643)
                      ..++.+++.|.+++++++..|+..|+.+... +..++..+.+.|+++.|+.+|.++ ++.++..|+++|.+++.+ ++.+
T Consensus        87 ~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~  166 (530)
T 1wa5_B           87 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT  166 (530)
T ss_dssp             CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence            3589999999999999999999999988643 245567788899999999999997 899999999999999975 5677


Q ss_pred             HHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHcccc-ccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCC
Q 006494          438 RHIAREGAIPAIIEILQNGTNEARENSAAALFSLSML-DENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQ  516 (643)
Q Consensus       438 ~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~  516 (643)
                      ..++..|+++.|+.+|++++++++..|+++|.+|+.. +.++..+...|+++.|+.++.+.+..++..|+++|.+|+.+.
T Consensus       167 ~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~  246 (530)
T 1wa5_B          167 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGK  246 (530)
T ss_dssp             HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCS
T ss_pred             HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCC
Confidence            7888999999999999999999999999999999976 457888888999999999999989999999999999999876


Q ss_pred             -CchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC-hhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHh
Q 006494          517 -SNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH-PEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLEL  594 (643)
Q Consensus       517 -en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L  594 (643)
                       +........|+++.|+.+|.+.+..++..|+++|.+|+.. ++....+.+.|+++.|+.+|.+.++..+..|+.+|.++
T Consensus       247 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l  326 (530)
T 1wa5_B          247 KPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI  326 (530)
T ss_dssp             SSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHH
Confidence             6666777799999999999988899999999999999987 56778888889999999999999999999999999999


Q ss_pred             ccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494          595 GLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK  638 (643)
Q Consensus       595 ~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~  638 (643)
                      +.+++.....+.+.|+++.|+.++.++++.+++.|.++|.++..
T Consensus       327 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~  370 (530)
T 1wa5_B          327 VTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITA  370 (530)
T ss_dssp             TTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred             HcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            99988888888889999999999999999999999999999975

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.90  E-value=1.1e-22  Score=226.55  Aligned_cols=276  Identities=22%  Similarity=0.281  Sum_probs=246.7

Q ss_pred             HHHHHHHHHhhcCC-CHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccC-hhhH
Q 006494          360 IEEICSLIQNLSSS-QLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLD-ETNK  437 (643)
Q Consensus       360 ~~~i~~Lv~~L~s~-~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~k  437 (643)
                      .+.++.|++.|.++ +++++..|+..|++++. +++++..+.+.|+++.|+.+|+++++.++..|+.+|.|++.+ +..+
T Consensus        58 ~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~-~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~  136 (529)
T 1jdh_A           58 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK  136 (529)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHH
T ss_pred             cchHHHHHHHHhcCCCHHHHHHHHHHHHHHHc-CchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchH
Confidence            47899999999754 89999999999999995 567999999999999999999999999999999999999976 5667


Q ss_pred             HHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHcccc-ccccchhhccCChHHHHHHcccCCh-hhHHHHHHHHHHhhcC
Q 006494          438 RHIAREGAIPAIIEILQNGTNEARENSAAALFSLSML-DENRVMVGNLNGIPPLVNLLRYGSI-RGKKDAATALFNLSIN  515 (643)
Q Consensus       438 ~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~s~~~-~~k~~A~~aL~nLs~~  515 (643)
                      ..+.+.|+++.|+.+|++++.+.+..++.+|.+|+.. ++++..+.+.|+++.|+.++++++. ..+..++.+|.||+.+
T Consensus       137 ~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~  216 (529)
T 1jdh_A          137 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC  216 (529)
T ss_dssp             HHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC
Confidence            7888999999999999999999999999999999874 5788899999999999999988754 4556778899999999


Q ss_pred             CCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhc
Q 006494          516 QSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELG  595 (643)
Q Consensus       516 ~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~  595 (643)
                      ++++..+++.|+++.|+.++.+++..++..++++|.+|+.......  ...++++.|++++.+.++..++.|+.+|.+|+
T Consensus       217 ~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~  294 (529)
T 1jdh_A          217 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLT  294 (529)
T ss_dssp             TTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred             cccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            9999999999999999999998888999999999999998753322  22478999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHcCcHHHHHHHHhhC--CHHHHHHHHHHHHHhhh
Q 006494          596 LNNSYFILAALQYGVYEHLVEITRCG--TNRGQRKANSLLQHMSK  638 (643)
Q Consensus       596 ~~~~~~~~~~~~~g~i~~L~~ll~~g--~~~~k~~A~~lL~~l~~  638 (643)
                      .++++.+..+.+.|+++.|+.++.+.  ++.++..|..+|.+|..
T Consensus       295 ~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~  339 (529)
T 1jdh_A          295 CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS  339 (529)
T ss_dssp             TTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred             cCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHc
Confidence            99888888899999999999999763  37999999999999865

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.90  E-value=3.1e-22  Score=217.89  Aligned_cols=278  Identities=16%  Similarity=0.130  Sum_probs=247.9

Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcC-CCHHHHHHHHHHHHhcccCh--hh
Q 006494          360 IEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSY-PDSKIQEHTVTALLNLSLDE--TN  436 (643)
Q Consensus       360 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~nLs~~~--~~  436 (643)
                      .+.++.|++.|.+++++++..|+..|.+++..++.++..+.+.|+++.|+.+|.+ .+..++..|+.+|.|++.+.  ..
T Consensus       106 ~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~  185 (450)
T 2jdq_A          106 AGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPP  185 (450)
T ss_dssp             TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCC
T ss_pred             CCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCC
Confidence            3689999999999999999999999999998888899999999999999999995 68999999999999998653  33


Q ss_pred             HHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccc-cccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcC
Q 006494          437 KRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLD-ENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSIN  515 (643)
Q Consensus       437 k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~  515 (643)
                      +..+. .++++.|+.++++++..++..++++|.+|+... +.+..+...|+++.|+.++.+++..++..|+.+|.+|+..
T Consensus       186 ~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  264 (450)
T 2jdq_A          186 EFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG  264 (450)
T ss_dssp             CGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred             CHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhC
Confidence            33333 789999999999999999999999999998754 4666777889999999999999999999999999999986


Q ss_pred             CCc-hHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhC-ChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHH
Q 006494          516 QSN-KSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLAS-HPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLE  593 (643)
Q Consensus       516 ~en-~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~-~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~  593 (643)
                      .+. ...+++.|+++.|+++|.++++.++..|+++|.+++. +++....+.+.|+++.|+.+|.++++..|..|+.+|.+
T Consensus       265 ~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~  344 (450)
T 2jdq_A          265 DDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITN  344 (450)
T ss_dssp             CHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            554 5567789999999999998888999999999999997 46777788888999999999999999999999999999


Q ss_pred             hccC-CHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494          594 LGLN-NSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK  638 (643)
Q Consensus       594 L~~~-~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~  638 (643)
                      ++.+ +++....+.+.|+++.|+.++.++++++++.|...|.++..
T Consensus       345 l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  390 (450)
T 2jdq_A          345 ATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILR  390 (450)
T ss_dssp             HHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred             HHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            9976 66777777789999999999999999999999999998865

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.90  E-value=1.1e-22  Score=226.45  Aligned_cols=277  Identities=17%  Similarity=0.165  Sum_probs=246.5

Q ss_pred             hHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHh-hCChHHHHHHhcCC-CHHHHHHHHHHHHhcccChhh
Q 006494          359 LIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIAN-NGGIRPLVQLLSYP-DSKIQEHTVTALLNLSLDETN  436 (643)
Q Consensus       359 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~-~g~i~~Lv~lL~~~-~~~~~~~a~~~L~nLs~~~~~  436 (643)
                      ..+.++.|+..|+++++.++..|+..|.+++. +..++..+.. .|+++.|+++|.++ +++++..|+.+|.+|+.++++
T Consensus        15 ~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~-~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~   93 (529)
T 1jdh_A           15 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSK-KEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG   93 (529)
T ss_dssp             --CHHHHHHHHHTCSCHHHHHHHHHHHHHHHT-SHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHH
T ss_pred             hHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHc-CCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchh
Confidence            35689999999999999999999999999995 4567766664 58999999999754 899999999999999999999


Q ss_pred             HHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccc-cccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhc-
Q 006494          437 KRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLD-ENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSI-  514 (643)
Q Consensus       437 k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~-  514 (643)
                      +..+.+.|+++.|+.+|+++++.++..|+.+|.+|+..+ ..+..+.+.|+++.|+.++++++..++..++.+|.+|+. 
T Consensus        94 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~  173 (529)
T 1jdh_A           94 LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG  173 (529)
T ss_dssp             HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999999999999774 567778889999999999999999999999999999997 


Q ss_pred             CCCchHHHHhcCcHHHHHHHhccC-ChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHH
Q 006494          515 NQSNKSRAIKAGIIPSLLKLLEDK-ALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLE  593 (643)
Q Consensus       515 ~~en~~~iv~~G~v~~Lv~lL~~~-~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~  593 (643)
                      +++++..+++.|+++.|+++|.+. .......++.+|.+|+.+++++..+.+.|+++.|+.++.++++..+++|+++|.+
T Consensus       174 ~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~  253 (529)
T 1jdh_A          174 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN  253 (529)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHH
Confidence            567899999999999999999874 4456778899999999999999999999999999999999999999999999999


Q ss_pred             hccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhhc
Q 006494          594 LGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSKR  639 (643)
Q Consensus       594 L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~~  639 (643)
                      ||...+...   ...|+++.|+.++.++++.++..|.++|.+|...
T Consensus       254 l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~  296 (529)
T 1jdh_A          254 LSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN  296 (529)
T ss_dssp             HHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT
T ss_pred             HhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence            998754321   1247899999999999999999999999999763

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.89  E-value=3.8e-22  Score=228.40  Aligned_cols=278  Identities=19%  Similarity=0.214  Sum_probs=244.1

Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHh-hCChHHHHHHhcCC-CHHHHHHHHHHHHhcccChhhH
Q 006494          360 IEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIAN-NGGIRPLVQLLSYP-DSKIQEHTVTALLNLSLDETNK  437 (643)
Q Consensus       360 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~-~g~i~~Lv~lL~~~-~~~~~~~a~~~L~nLs~~~~~k  437 (643)
                      .+.++.|+..|++.++.++..|+..|.+++..+ .++..+.. .|+++.|+++|.++ +++++..|+.+|.+|+.+++++
T Consensus        13 ~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~-~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~   91 (644)
T 2z6h_A           13 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL   91 (644)
T ss_dssp             TTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTST-THHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred             hchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCC-hhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhH
Confidence            467999999999999999999999999999654 56766664 48999999999865 8999999999999999999999


Q ss_pred             HHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccc-cccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhc-C
Q 006494          438 RHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLD-ENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSI-N  515 (643)
Q Consensus       438 ~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~-~  515 (643)
                      ..+.+.|+++.|+.+|+++++.++..|+.+|.+|+..+ ..+..+.+.|+++.|+.+|++++.+.+..++.+|.+|+. +
T Consensus        92 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~  171 (644)
T 2z6h_A           92 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN  171 (644)
T ss_dssp             HHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999998764 567777889999999999999998888888999999997 7


Q ss_pred             CCchHHHHhcCcHHHHHHHhccC-ChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHH------------------
Q 006494          516 QSNKSRAIKAGIIPSLLKLLEDK-ALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEII------------------  576 (643)
Q Consensus       516 ~en~~~iv~~G~v~~Lv~lL~~~-~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL------------------  576 (643)
                      ++++..+++.|+++.|+++|.+. ....++.++.+|.+|+.+++++..+++.|+++.|+.++                  
T Consensus       172 ~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL  251 (644)
T 2z6h_A          172 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL  251 (644)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            78899999999999999999874 45678889999999999999999998888777665544                  


Q ss_pred             ---------------------hcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhh-CC-HHHHHHHHHHH
Q 006494          577 ---------------------KNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRC-GT-NRGQRKANSLL  633 (643)
Q Consensus       577 ---------------------~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~-g~-~~~k~~A~~lL  633 (643)
                                           .+.++..++.|+.+|.+|+.+++.....+.+.|+++.|+.++.+ ++ +.++..|..+|
T Consensus       252 ~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL  331 (644)
T 2z6h_A          252 SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL  331 (644)
T ss_dssp             GGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHH
Confidence                                 44567778888888888888888888888899999999999976 33 79999999999


Q ss_pred             HHhhh
Q 006494          634 QHMSK  638 (643)
Q Consensus       634 ~~l~~  638 (643)
                      .+|..
T Consensus       332 ~nL~~  336 (644)
T 2z6h_A          332 RHLTS  336 (644)
T ss_dssp             HHHTS
T ss_pred             HHHhc
Confidence            99964

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.89  E-value=6.1e-23  Score=202.89  Aligned_cols=195  Identities=19%  Similarity=0.264  Sum_probs=175.7

Q ss_pred             HHHHHHHHhhcCCCH--HHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhccc-ChhhH
Q 006494          361 EEICSLIQNLSSSQL--NIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSL-DETNK  437 (643)
Q Consensus       361 ~~i~~Lv~~L~s~~~--~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~k  437 (643)
                      ..++.+|+.|.++++  +++..|+..|++++..++.+|..+.+.|+||+|+.+|++++.++|+.|+++|.||+. +++||
T Consensus         8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk   87 (233)
T 3tt9_A            8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK   87 (233)
T ss_dssp             CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence            468999999999888  889999999999999999999999999999999999999999999999999999997 58999


Q ss_pred             HHHHhcCChHHHHHHHc-cCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcc---cC-------------Chh
Q 006494          438 RHIAREGAIPAIIEILQ-NGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLR---YG-------------SIR  500 (643)
Q Consensus       438 ~~i~~~g~i~~Lv~lL~-~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~---s~-------------~~~  500 (643)
                      ..|++.|+|++|+++|+ +++.+++++|+++|++||..+.+|..|.+ +++++|+.++.   +|             +..
T Consensus        88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~  166 (233)
T 3tt9_A           88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDFD  166 (233)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred             HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHh-ccHHHHHHHHhccccCCcccccccccccchHH
Confidence            99999999999999998 57999999999999999999999999987 47999998763   22             458


Q ss_pred             hHHHHHHHHHHhhc-CCCchHHHHhc-CcHHHHHHHhccC------ChhhHHHHHHHHHHHhCC
Q 006494          501 GKKDAATALFNLSI-NQSNKSRAIKA-GIIPSLLKLLEDK------ALGMVDEALSILQLLASH  556 (643)
Q Consensus       501 ~k~~A~~aL~nLs~-~~en~~~iv~~-G~v~~Lv~lL~~~------~~~~~~~Al~iL~nLa~~  556 (643)
                      ++.+|+.+|+||++ ++++|..|.+. |+|+.|+.++...      +...+|.|+.+|.||+..
T Consensus       167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            99999999999998 45889999885 7789999999752      456899999999999975

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.88  E-value=9.2e-22  Score=221.65  Aligned_cols=280  Identities=16%  Similarity=0.169  Sum_probs=237.8

Q ss_pred             hHHHHHHHHHhhcC-CCHHHHHHHHHHHHHhhhhChh--------------------------------------hHHHH
Q 006494          359 LIEEICSLIQNLSS-SQLNIKRDSVMKIRMLSKENPD--------------------------------------NRILI  399 (643)
Q Consensus       359 ~~~~i~~Lv~~L~s-~~~~~~~~Al~~L~~La~~~~~--------------------------------------~r~~i  399 (643)
                      +.+.+..|+..+++ .+....+.++..|.|++...+.                                      ++..+
T Consensus       374 d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l  453 (778)
T 3opb_A          374 NESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYI  453 (778)
T ss_dssp             CHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHH
Confidence            46779999999984 6778889999999988763321                                      45667


Q ss_pred             HhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHHHHccCCHH---HHHHHHHHHHHcccccc
Q 006494          400 ANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTNE---ARENSAAALFSLSMLDE  476 (643)
Q Consensus       400 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~---~~~~Aa~~L~~Ls~~~~  476 (643)
                      .++|+++.|+.+++++++.+++.|+++|.||+.++++|..++..|++++|+.+|.+++..   .+.+|+.+|.+|+...+
T Consensus       454 ~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~n  533 (778)
T 3opb_A          454 LRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTN  533 (778)
T ss_dssp             TTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSC
T ss_pred             HHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCC
Confidence            889999999999999999999999999999999999999999999999999999988654   89999999999986655


Q ss_pred             ccchhhc---cCChHHHHHHccc--CCh------------hhHHHHHHHHHHhhcCCCc-----hHHHHhc-CcHHHHHH
Q 006494          477 NRVMVGN---LNGIPPLVNLLRY--GSI------------RGKKDAATALFNLSINQSN-----KSRAIKA-GIIPSLLK  533 (643)
Q Consensus       477 ~k~~i~~---~g~i~~Lv~lL~s--~~~------------~~k~~A~~aL~nLs~~~en-----~~~iv~~-G~v~~Lv~  533 (643)
                      ....+..   .|+|++|+.+|..  +..            ..+..|+.||.||++.++|     +.+++.. |+++.|.+
T Consensus       534 p~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~  613 (778)
T 3opb_A          534 PGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIEN  613 (778)
T ss_dssp             HHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHH
T ss_pred             HHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHH
Confidence            4444432   4899999999983  211            1278999999999998743     7889995 99999999


Q ss_pred             HhccCChhhHHHHHHHHHHHhCChhhH-HHHHhc------CcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHH
Q 006494          534 LLEDKALGMVDEALSILQLLASHPEGR-NEIGRL------SFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAAL  606 (643)
Q Consensus       534 lL~~~~~~~~~~Al~iL~nLa~~~~~~-~~i~~~------g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~  606 (643)
                      +|.+++..++..|+++++||+.+++++ ..+...      +.++.|+.++.+++...|..|+++|.+++...+..+..++
T Consensus       614 LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll  693 (778)
T 3opb_A          614 LMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELL  693 (778)
T ss_dssp             GGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHT
T ss_pred             HHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence            999988899999999999999998875 355432      2488999999999999999999999999888888777777


Q ss_pred             Hc-CcHHHHHHHHhh--CCHHHHHHHHHHHHHhhh
Q 006494          607 QY-GVYEHLVEITRC--GTNRGQRKANSLLQHMSK  638 (643)
Q Consensus       607 ~~-g~i~~L~~ll~~--g~~~~k~~A~~lL~~l~~  638 (643)
                      +. ++++.|+.++.+  .++..+..+..++.+|..
T Consensus       694 ~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~  728 (778)
T 3opb_A          694 TKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE  728 (778)
T ss_dssp             TCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred             HccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence            75 899999999999  899999999999999986

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.88  E-value=3.1e-21  Score=220.85  Aligned_cols=277  Identities=19%  Similarity=0.171  Sum_probs=246.8

Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhccc-ChhhHHH
Q 006494          361 EEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSL-DETNKRH  439 (643)
Q Consensus       361 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~k~~  439 (643)
                      +.++.|++.|.+.++.++..|+..|.+++..++..+..+.+.|+++.|+.+|++++++++..++.+|.+|+. +++++..
T Consensus        98 g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~  177 (644)
T 2z6h_A           98 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLI  177 (644)
T ss_dssp             THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            689999999999999999999999999998878888889999999999999999999999999999999996 7889999


Q ss_pred             HHhcCChHHHHHHHccCC-HHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCc
Q 006494          440 IAREGAIPAIIEILQNGT-NEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSN  518 (643)
Q Consensus       440 i~~~g~i~~Lv~lL~~~~-~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en  518 (643)
                      +.+.|+++.|+.+|++++ ...+..++.+|.+|+...+++..+.+.|+++.|+.++.+++..++..++++|.||+.....
T Consensus       178 i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~  257 (644)
T 2z6h_A          178 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK  257 (644)
T ss_dssp             HHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTT
T ss_pred             HHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchh
Confidence            999999999999999874 6778899999999999999999999999999999999999999999999999999975433


Q ss_pred             hHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC-hhhHHHHHhcCcHHHHHHHHhcCC--hHHHHHHHHHHHHhc
Q 006494          519 KSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH-PEGRNEIGRLSFIETLVEIIKNGT--PKNKECATSVLLELG  595 (643)
Q Consensus       519 ~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~s--~~~ke~A~~~L~~L~  595 (643)
                      .  ....|+++.|+++|.+.+..+++.|+++|.+|+.+ ++.+..+.+.|+++.|+.++.+.+  +..++.|+.+|.+|+
T Consensus       258 ~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~  335 (644)
T 2z6h_A          258 Q--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT  335 (644)
T ss_dssp             C--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             h--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHh
Confidence            2  12248899999999998999999999999999997 578999999999999999998733  799999999999999


Q ss_pred             cCCH---HHHHHHHHcCcHHHHHHHHhhCC-HHHHHHHHHHHHHhhhc
Q 006494          596 LNNS---YFILAALQYGVYEHLVEITRCGT-NRGQRKANSLLQHMSKR  639 (643)
Q Consensus       596 ~~~~---~~~~~~~~~g~i~~L~~ll~~g~-~~~k~~A~~lL~~l~~~  639 (643)
                      ...+   .....+.+.|+++.|+.++.+.+ +..++.|.++|.+|...
T Consensus       336 ~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~  383 (644)
T 2z6h_A          336 SRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC  383 (644)
T ss_dssp             SSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS
T ss_pred             cCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccC
Confidence            8644   23344777899999999998875 69999999999998753

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.88  E-value=3.3e-22  Score=197.62  Aligned_cols=194  Identities=20%  Similarity=0.302  Sum_probs=173.8

Q ss_pred             CChHHHHHHhcCCCH--HHHHHHHHHHHhcc-cChhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccc-ccccc
Q 006494          403 GGIRPLVQLLSYPDS--KIQEHTVTALLNLS-LDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSM-LDENR  478 (643)
Q Consensus       403 g~i~~Lv~lL~~~~~--~~~~~a~~~L~nLs-~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~-~~~~k  478 (643)
                      -.++.|+.+|.++++  ++|..|+..|.+|+ .++.++..+.+.|+||+|+.+|++++.+++..|+++|.+|+. ++++|
T Consensus         8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk   87 (233)
T 3tt9_A            8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK   87 (233)
T ss_dssp             CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence            368999999999988  88999999999999 467899999999999999999999999999999999999997 46799


Q ss_pred             chhhccCChHHHHHHcc-cCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhcc----------------CChh
Q 006494          479 VMVGNLNGIPPLVNLLR-YGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLED----------------KALG  541 (643)
Q Consensus       479 ~~i~~~g~i~~Lv~lL~-s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~----------------~~~~  541 (643)
                      ..|.+.|+|++|+.+|. +++..+++.|+.+|+||+.++++|..+++. ++++|++++..                .+..
T Consensus        88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~  166 (233)
T 3tt9_A           88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFD  166 (233)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred             HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHH
Confidence            99999999999999998 478999999999999999999999999875 69999987631                1447


Q ss_pred             hHHHHHHHHHHHhCC-hhhHHHHHhc-CcHHHHHHHHhcC------ChHHHHHHHHHHHHhccC
Q 006494          542 MVDEALSILQLLASH-PEGRNEIGRL-SFIETLVEIIKNG------TPKNKECATSVLLELGLN  597 (643)
Q Consensus       542 ~~~~Al~iL~nLa~~-~~~~~~i~~~-g~i~~Lv~lL~~~------s~~~ke~A~~~L~~L~~~  597 (643)
                      +++.|..+|.||++. +++|..+.+. |.|+.|+.+++.+      +...+|+|+.+|.+||..
T Consensus       167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            899999999999984 7999999986 6789999999863      457899999999999975

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.87  E-value=6.1e-21  Score=222.65  Aligned_cols=276  Identities=23%  Similarity=0.293  Sum_probs=245.0

Q ss_pred             HHHHHHHHHhhcCC-CHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccC-hhhH
Q 006494          360 IEEICSLIQNLSSS-QLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLD-ETNK  437 (643)
Q Consensus       360 ~~~i~~Lv~~L~s~-~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~k  437 (643)
                      .+.++.|++.|.++ +++++..|+..|++|+. +..++..+.+.|+++.|+.+|++++..++..|+.+|.||+.+ +..+
T Consensus       191 ~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~-~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~  269 (780)
T 2z6g_A          191 PQMVSAIVRTMQNTNDVETARCTSGTLHNLSH-HREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAK  269 (780)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHH
T ss_pred             cChHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhH
Confidence            47899999999754 89999999999999985 577888999999999999999999999999999999999976 5667


Q ss_pred             HHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccc-cccccchhhccCChHHHHHHcccCCh-hhHHHHHHHHHHhhcC
Q 006494          438 RHIAREGAIPAIIEILQNGTNEARENSAAALFSLSM-LDENRVMVGNLNGIPPLVNLLRYGSI-RGKKDAATALFNLSIN  515 (643)
Q Consensus       438 ~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~-~~~~k~~i~~~g~i~~Lv~lL~s~~~-~~k~~A~~aL~nLs~~  515 (643)
                      ..+.+.|+++.|+.+|++++..++..++.+|.+|+. +++++..+.+.|+++.|+.++++++. ..+..++.+|.+|+.+
T Consensus       270 ~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~  349 (780)
T 2z6g_A          270 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC  349 (780)
T ss_dssp             HHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC
Confidence            777789999999999999999999999999999986 46788899999999999999988755 4556788999999999


Q ss_pred             CCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhc
Q 006494          516 QSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELG  595 (643)
Q Consensus       516 ~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~  595 (643)
                      ++++..+++.|+++.|+.+|.+.+..++..|+++|.+|+......  ....++++.|+.+|.+.++..++.|+.+|.+|+
T Consensus       350 ~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~--~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~  427 (780)
T 2z6g_A          350 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT  427 (780)
T ss_dssp             TTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999888899999999999999874321  122478999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHcCcHHHHHHHHhh-CC-HHHHHHHHHHHHHhhh
Q 006494          596 LNNSYFILAALQYGVYEHLVEITRC-GT-NRGQRKANSLLQHMSK  638 (643)
Q Consensus       596 ~~~~~~~~~~~~~g~i~~L~~ll~~-g~-~~~k~~A~~lL~~l~~  638 (643)
                      .+++..+..+.+.|+++.|+.++.+ ++ +.++..|..+|.+|..
T Consensus       428 ~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~  472 (780)
T 2z6g_A          428 CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS  472 (780)
T ss_dssp             SSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred             hCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence            9998888889999999999999976 43 4899999999999874

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.87  E-value=5.5e-21  Score=186.48  Aligned_cols=197  Identities=22%  Similarity=0.297  Sum_probs=180.3

Q ss_pred             hhCChHHHHHHhcCCCHHHHHHHHHHHHhcc-cChhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccc-ccccc
Q 006494          401 NNGGIRPLVQLLSYPDSKIQEHTVTALLNLS-LDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSM-LDENR  478 (643)
Q Consensus       401 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs-~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~-~~~~k  478 (643)
                      ..|..+.|+.+|.+++++++..|+.+|.+++ .+++++..+.+.|+++.|+.+|++++++++..|+++|.+|+. .++++
T Consensus        10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~   89 (210)
T 4db6_A           10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI   89 (210)
T ss_dssp             ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence            3578899999999999999999999999999 567888899999999999999999999999999999999995 55688


Q ss_pred             chhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcC-CCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC-
Q 006494          479 VMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSIN-QSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH-  556 (643)
Q Consensus       479 ~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~-~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~-  556 (643)
                      ..+.+.|+++.|+.+|++++..++..|+++|.||+.. ++++..+++.|+++.|+++|.+++..++..|+++|.||+.+ 
T Consensus        90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~  169 (210)
T 4db6_A           90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG  169 (210)
T ss_dssp             HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence            8999999999999999999999999999999999974 44567888999999999999998899999999999999998 


Q ss_pred             hhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccC
Q 006494          557 PEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLN  597 (643)
Q Consensus       557 ~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~  597 (643)
                      ++.+..+.+.|+++.|+.++.++++..++.|+.+|.+|+.+
T Consensus       170 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  210 (210)
T 4db6_A          170 NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH  210 (210)
T ss_dssp             HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC-
T ss_pred             cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhcC
Confidence            88899999999999999999999999999999999999863

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.86  E-value=3.5e-21  Score=224.68  Aligned_cols=276  Identities=17%  Similarity=0.176  Sum_probs=245.7

Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHh-hCChHHHHHHhcCC-CHHHHHHHHHHHHhcccChhhH
Q 006494          360 IEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIAN-NGGIRPLVQLLSYP-DSKIQEHTVTALLNLSLDETNK  437 (643)
Q Consensus       360 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~-~g~i~~Lv~lL~~~-~~~~~~~a~~~L~nLs~~~~~k  437 (643)
                      .+.++.|+..|.+.++.++..|+..|.+++. +..++..+.+ .|+++.|+.+|.++ +++++..|+.+|.+|+.+++++
T Consensus       149 ~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~-~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~  227 (780)
T 2z6g_A          149 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSK-KEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGL  227 (780)
T ss_dssp             HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHT-SHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHH
T ss_pred             hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhC-CChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhH
Confidence            5789999999999999999999999999996 4566767764 48999999999754 8999999999999999999999


Q ss_pred             HHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccc-cccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhc-C
Q 006494          438 RHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLD-ENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSI-N  515 (643)
Q Consensus       438 ~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~-~  515 (643)
                      ..+.+.|+++.|+.+|++++..++..|+++|.+|+... ..+..+.+.|+++.|+.+|.+++..++..|+.+|.+|+. +
T Consensus       228 ~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~  307 (780)
T 2z6g_A          228 LAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN  307 (780)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999764 567777789999999999999998999999999999997 5


Q ss_pred             CCchHHHHhcCcHHHHHHHhccCC-hhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHh
Q 006494          516 QSNKSRAIKAGIIPSLLKLLEDKA-LGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLEL  594 (643)
Q Consensus       516 ~en~~~iv~~G~v~~Lv~lL~~~~-~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L  594 (643)
                      ++++..+++.|+++.|+.+|.+.+ ....+.++.+|.+|+.++..+..+++.|+++.|+.++.++++..++.|+.+|.+|
T Consensus       308 ~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L  387 (780)
T 2z6g_A          308 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL  387 (780)
T ss_dssp             HHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence            778999999999999999998754 4466788999999999999999999999999999999999999999999999999


Q ss_pred             ccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhhc
Q 006494          595 GLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSKR  639 (643)
Q Consensus       595 ~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~~  639 (643)
                      |......   ....++++.|+.++.+.++.+++.|..+|.+|...
T Consensus       388 ~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~  429 (780)
T 2z6g_A          388 SDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN  429 (780)
T ss_dssp             HTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS
T ss_pred             hccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence            9876431   11246899999999999999999999999999753

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.86  E-value=8.3e-21  Score=185.20  Aligned_cols=197  Identities=23%  Similarity=0.310  Sum_probs=181.3

Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhccc-ChhhHH
Q 006494          360 IEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSL-DETNKR  438 (643)
Q Consensus       360 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~k~  438 (643)
                      .+..+.|+..|.+.+++++..|+..|.+++..++.++..+.+.|+++.|+.+|++++++++..|+.+|.|++. ++.++.
T Consensus        11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   90 (210)
T 4db6_A           11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ   90 (210)
T ss_dssp             --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence            3567889999999999999999999999998899999999999999999999999999999999999999994 678888


Q ss_pred             HHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccc-cccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcC-C
Q 006494          439 HIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLD-ENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSIN-Q  516 (643)
Q Consensus       439 ~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~-~  516 (643)
                      .+.+.|+++.|+.+|+++++.++..|+++|.+|+..+ +.+..+.+.|+++.|+.++++++..++..|+.+|.||+.. +
T Consensus        91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~  170 (210)
T 4db6_A           91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN  170 (210)
T ss_dssp             HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH
T ss_pred             HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCc
Confidence            9999999999999999999999999999999999654 4667788899999999999999999999999999999986 6


Q ss_pred             CchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC
Q 006494          517 SNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH  556 (643)
Q Consensus       517 en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~  556 (643)
                      +++..+++.|+++.|++++.+++..+++.|+.+|.+|+.+
T Consensus       171 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  210 (210)
T 4db6_A          171 EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH  210 (210)
T ss_dssp             HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC-
T ss_pred             HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhcC
Confidence            7788889999999999999999999999999999999864

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=99.82  E-value=9.5e-21  Score=177.48  Aligned_cols=77  Identities=26%  Similarity=0.426  Sum_probs=71.9

Q ss_pred             CCCCCCcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCchhhhHHHHHHHHhhcccc
Q 006494          266 TMLVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLIVQWCEKNNVE  342 (643)
Q Consensus       266 ~~~~p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~~~~~~  342 (643)
                      ...+|++|.||||+++|+|||+++|||||||.||++|+..++.+||+|+.++...+++||..++.+|..|+..||+.
T Consensus       100 ~~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~~~~~~  176 (179)
T 2f42_A          100 KREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQENGWV  176 (179)
T ss_dssp             CCCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHCTTC
T ss_pred             ccCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHHHHCCCc
Confidence            35689999999999999999999999999999999999975558999999999999999999999999999999875

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=99.81  E-value=1.1e-20  Score=161.50  Aligned_cols=75  Identities=31%  Similarity=0.420  Sum_probs=70.3

Q ss_pred             cCCCCCCcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCchhhhHHHHHHHHhhcc
Q 006494          265 QTMLVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLIVQWCEKNN  340 (643)
Q Consensus       265 ~~~~~p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~~~~  340 (643)
                      ....+|++|.||||+++|+|||+++|||+|||.||++||.. +.+||+|++++...+++||..++.+|+.|+.+|+
T Consensus        22 ~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~   96 (100)
T 2kre_A           22 DYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLTESMLEPVPELKEQIQAWMREKQ   96 (100)
T ss_dssp             SCSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS-CSBCSSSCCBCCTTSSEECHHHHHHHHHHHHTTT
T ss_pred             hhccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc-CCCCCCCCCCCChhhceECHHHHHHHHHHHHHhh
Confidence            34568999999999999999999999999999999999985 6899999999999999999999999999999876

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=99.81  E-value=9.2e-21  Score=157.23  Aligned_cols=74  Identities=31%  Similarity=0.442  Sum_probs=69.6

Q ss_pred             CCCCCcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCchhhhHHHHHHHHhhccc
Q 006494          267 MLVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLIVQWCEKNNV  341 (643)
Q Consensus       267 ~~~p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~~~~~  341 (643)
                      ..+|++|.||||+++|+|||+++|||+|||.||++||.. +.+||+|++++....++||..++++|+.|+.+++.
T Consensus         9 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~~~   82 (85)
T 2kr4_A            9 SDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESMLEPVPELKEQIQAWMREKQS   82 (85)
T ss_dssp             TTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHHH
T ss_pred             hcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChHhcchHHHHHHHHHHHHHHhhh
Confidence            468999999999999999999999999999999999996 68999999999999999999999999999988753

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=99.81  E-value=2e-20  Score=159.21  Aligned_cols=75  Identities=29%  Similarity=0.442  Sum_probs=71.0

Q ss_pred             CCCCCcccCccCcccccCCeecCCc-ccccHHhHHHHHhcCCCCCCCCCcccCCCCCCchhhhHHHHHHHHhhcccc
Q 006494          267 MLVPHEFLCPVTLEIMTDPVIVATG-QTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLIVQWCEKNNVE  342 (643)
Q Consensus       267 ~~~p~~f~Cpi~~~~m~dPv~~~~g-~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~~~~~~  342 (643)
                      ..+|++|.||||+++|+|||+++|| |+|||.||++||.. +.+||+|++++....++||..++.+|+.|+..++..
T Consensus        17 ~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~~   92 (98)
T 1wgm_A           17 ADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQQ   92 (98)
T ss_dssp             CSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHSTTC
T ss_pred             hcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhceEcHHHHHHHHHHHHHcchh
Confidence            5689999999999999999999999 99999999999987 679999999999999999999999999999988765

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.80  E-value=9.7e-19  Score=197.18  Aligned_cols=277  Identities=14%  Similarity=0.115  Sum_probs=227.5

Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHh-hCChHHHHHHhcC-CCHHHHHHHHHHHHhcccChh--
Q 006494          360 IEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIAN-NGGIRPLVQLLSY-PDSKIQEHTVTALLNLSLDET--  435 (643)
Q Consensus       360 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~-~g~i~~Lv~lL~~-~~~~~~~~a~~~L~nLs~~~~--  435 (643)
                      ....+.+++.|...+.+.+..|++.|..++. +++.|..+++ .|+++.|+.+++. .+..+...++.+|.||+.+.+  
T Consensus       333 ~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl-~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~  411 (778)
T 3opb_A          333 KQLSEIFINAISRRIVPKVEMSVEALAYLSL-KASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEX  411 (778)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHHHHTT-SSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCC
T ss_pred             HHHHHHHHHHHhcCCccHHHHHHHHHHHHhC-CHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCccc
Confidence            3477888888888777789999999999994 6777888875 5779999999995 788899999999999975211  


Q ss_pred             -------------------------------------hHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHcccccccc
Q 006494          436 -------------------------------------NKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENR  478 (643)
Q Consensus       436 -------------------------------------~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k  478 (643)
                                                           ++..+.+.|+++.|+.+++++++.+++.|+++|.+|+.+.++|
T Consensus       412 ~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R  491 (778)
T 3opb_A          412 XXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFI  491 (778)
T ss_dssp             CCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGH
T ss_pred             chhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH
Confidence                                                 4456668999999999999999999999999999999999999


Q ss_pred             chhhccCChHHHHHHcccCChh---hHHHHHHHHHHhhcCCCchHHHH--h-cCcHHHHHHHhcc-CChh----------
Q 006494          479 VMVGNLNGIPPLVNLLRYGSIR---GKKDAATALFNLSINQSNKSRAI--K-AGIIPSLLKLLED-KALG----------  541 (643)
Q Consensus       479 ~~i~~~g~i~~Lv~lL~s~~~~---~k~~A~~aL~nLs~~~en~~~iv--~-~G~v~~Lv~lL~~-~~~~----------  541 (643)
                      ..+.+.|++++|+.+|.+++..   ++..|+.+|.+|+...+....+-  . .|++++|+++|.. +...          
T Consensus       492 ~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~  571 (778)
T 3opb_A          492 PQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQI  571 (778)
T ss_dssp             HHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCC
T ss_pred             HHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccc
Confidence            9999999999999999988644   89999999999986554433321  1 4999999999973 2111          


Q ss_pred             --h-HHHHHHHHHHHhCCh-----hhHHHHHhc-CcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHH-----
Q 006494          542 --M-VDEALSILQLLASHP-----EGRNEIGRL-SFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQ-----  607 (643)
Q Consensus       542 --~-~~~Al~iL~nLa~~~-----~~~~~i~~~-g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~-----  607 (643)
                        . +-.|+.+|.|||..+     +.|..|++. |+++.|..+|.+.++..|..|+.++++|+.+.....+.+.+     
T Consensus       572 ~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~  651 (778)
T 3opb_A          572 KLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQ  651 (778)
T ss_dssp             CHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHH
T ss_pred             cHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCch
Confidence              2 668999999999986     457888885 99999999999999999999999999999855432122221     


Q ss_pred             -cCcHHHHHHHHhhCCHHHHHHHHHHHHHhh
Q 006494          608 -YGVYEHLVEITRCGTNRGQRKANSLLQHMS  637 (643)
Q Consensus       608 -~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~  637 (643)
                       .+.++.|+.++.+++.+.|+.|.++|.++.
T Consensus       652 ~~~rL~lLV~Ll~s~D~~~r~AAagALAnLt  682 (778)
T 3opb_A          652 SLRNFNILVKLLQLSDVESQRAVAAIFANIA  682 (778)
T ss_dssp             HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             hhccHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence             123889999999999999999999999985

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.80  E-value=1.8e-18  Score=177.94  Aligned_cols=222  Identities=16%  Similarity=0.146  Sum_probs=187.6

Q ss_pred             HHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHH-HHccCCHHHHHHHHHHHHHccccc-cccchhhccCChHHHHHHc
Q 006494          417 SKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIE-ILQNGTNEARENSAAALFSLSMLD-ENRVMVGNLNGIPPLVNLL  494 (643)
Q Consensus       417 ~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~-lL~~~~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL  494 (643)
                      .+.+..|+..|.++..+.+|...+.+.|++++++. +|++++++++..|+++|.+++.++ ..+..+.+.|++++|+.+|
T Consensus        54 ~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL  133 (296)
T 1xqr_A           54 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL  133 (296)
T ss_dssp             HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence            35677889999999998889999999999999999 999999999999999999998765 5788899999999999999


Q ss_pred             ccC-ChhhHHHHHHHHHHhhcCC-CchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC-hhhHHHHHhcCcHHH
Q 006494          495 RYG-SIRGKKDAATALFNLSINQ-SNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH-PEGRNEIGRLSFIET  571 (643)
Q Consensus       495 ~s~-~~~~k~~A~~aL~nLs~~~-en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~-~~~~~~i~~~g~i~~  571 (643)
                      +++ +..+++.|+++|.||+.+. +....++++|+++.|+.+|.+++..++..|+++|.+|+.. ++.+..+++.|+++.
T Consensus       134 ~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~  213 (296)
T 1xqr_A          134 DRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ  213 (296)
T ss_dssp             HHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHH
T ss_pred             ccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHH
Confidence            875 7889999999999999754 4567888999999999999999999999999999999885 788999999999999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHc--CcHHHH---HHHHh-hC-CHHHHHHHHHHHHHhhh
Q 006494          572 LVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQY--GVYEHL---VEITR-CG-TNRGQRKANSLLQHMSK  638 (643)
Q Consensus       572 Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~--g~i~~L---~~ll~-~g-~~~~k~~A~~lL~~l~~  638 (643)
                      |+.+|.+.++..++.|+.+|.+|+...+.........  .....|   .+-++ .. +....++|..++..+..
T Consensus       214 Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~  287 (296)
T 1xqr_A          214 LVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFS  287 (296)
T ss_dssp             HHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC
T ss_pred             HHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999866544433221  122222   22233 22 56888999999987753

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.79  E-value=1.2e-17  Score=171.70  Aligned_cols=238  Identities=18%  Similarity=0.205  Sum_probs=191.1

Q ss_pred             HhHHHHHHHHHhhcCC------------CHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHH-HhcCCCHHHHHHHH
Q 006494          358 ALIEEICSLIQNLSSS------------QLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQ-LLSYPDSKIQEHTV  424 (643)
Q Consensus       358 ~~~~~i~~Lv~~L~s~------------~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~-lL~~~~~~~~~~a~  424 (643)
                      .+...++..+..|.+.            +.+.+..|+..|..+. .+.++...+...|++++|+. +|.++++.+++.|+
T Consensus        25 d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv-~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa  103 (296)
T 1xqr_A           25 GEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLC-ENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAA  103 (296)
T ss_dssp             HHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHH-TSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHH-hChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHH
Confidence            3445566666666653            2356788999999999 46778888999999999999 99999999999999


Q ss_pred             HHHHhcccC-hhhHHHHHhcCChHHHHHHHccC-CHHHHHHHHHHHHHccccc-cccchhhccCChHHHHHHcccCChhh
Q 006494          425 TALLNLSLD-ETNKRHIAREGAIPAIIEILQNG-TNEARENSAAALFSLSMLD-ENRVMVGNLNGIPPLVNLLRYGSIRG  501 (643)
Q Consensus       425 ~~L~nLs~~-~~~k~~i~~~g~i~~Lv~lL~~~-~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~s~~~~~  501 (643)
                      ++|.|++.+ +..+..+++.|++++|+.+|+++ +..++..|+++|.+|+... ..+..+.+.|+++.|+.+|++++..+
T Consensus       104 ~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v  183 (296)
T 1xqr_A          104 QLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKL  183 (296)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHH
Confidence            999999865 66788888999999999999964 7899999999999998654 45667888899999999999999999


Q ss_pred             HHHHHHHHHHhhc-CCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC-hhhHHHHHhc-CcHH-HH---HH
Q 006494          502 KKDAATALFNLSI-NQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH-PEGRNEIGRL-SFIE-TL---VE  574 (643)
Q Consensus       502 k~~A~~aL~nLs~-~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~-~~~~~~i~~~-g~i~-~L---v~  574 (643)
                      ++.|+++|.+|+. +++.+..+++.|++++|+.+|.+++..+++.|+.+|.+|+.. +......... ..+. .|   .+
T Consensus       184 ~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~  263 (296)
T 1xqr_A          184 KVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQ  263 (296)
T ss_dssp             HHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHH
Confidence            9999999999987 567789999999999999999998899999999999999987 3333333221 1122 22   22


Q ss_pred             HHhcC--ChHHHHHHHHHHHHhcc
Q 006494          575 IIKNG--TPKNKECATSVLLELGL  596 (643)
Q Consensus       575 lL~~~--s~~~ke~A~~~L~~L~~  596 (643)
                      -++..  ..+..+.|..++..+..
T Consensus       264 ~lq~~e~~~e~~~~~~~il~~~f~  287 (296)
T 1xqr_A          264 LLQQHEEYQEELEFCEKLLQTCFS  287 (296)
T ss_dssp             HHTTCGGGHHHHHHHHHHHHHHCC
T ss_pred             HccchHHHHHHHHHHHHHHHHHcC
Confidence            33322  24666777777766654

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.76  E-value=7e-19  Score=143.83  Aligned_cols=76  Identities=58%  Similarity=1.099  Sum_probs=72.0

Q ss_pred             CCCCCcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCchhhhHHHHHHHHhhcccc
Q 006494          267 MLVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLIVQWCEKNNVE  342 (643)
Q Consensus       267 ~~~p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~~~~~~  342 (643)
                      ..+|++|.||||+++|.|||+++|||+||+.||.+|+..++.+||.|+.++....+.||..++.+|+.|..+++++
T Consensus         3 ~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~~~~   78 (78)
T 1t1h_A            3 PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGIE   78 (78)
T ss_dssp             CCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCCC
T ss_pred             cCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHHcCCC
Confidence            4689999999999999999999999999999999999987889999999999999999999999999999999864

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.72  E-value=1.8e-17  Score=169.67  Aligned_cols=78  Identities=26%  Similarity=0.427  Sum_probs=72.7

Q ss_pred             cCCCCCCcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCchhhhHHHHHHHHhhcccc
Q 006494          265 QTMLVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLIVQWCEKNNVE  342 (643)
Q Consensus       265 ~~~~~p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~~~~~~  342 (643)
                      ....+|++|.||||+++|+|||+++|||||||.||++|+..++.+||+|+.++....++||..++.+|..|+..+|+.
T Consensus       201 ~~~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~~~~~  278 (281)
T 2c2l_A          201 KKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGWV  278 (281)
T ss_dssp             SCCCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSCS
T ss_pred             cCCCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHHCCCC
Confidence            345789999999999999999999999999999999999986677999999999999999999999999999999865

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.70  E-value=6.6e-18  Score=142.92  Aligned_cols=73  Identities=33%  Similarity=0.518  Sum_probs=64.9

Q ss_pred             CCCCcccCccCcccccCCeecC-CcccccHHhHHHHHhcC-----CCCCCCCCcc---cCCCCCCchhhhHHHHHHHHhh
Q 006494          268 LVPHEFLCPVTLEIMTDPVIVA-TGQTYERESIQRWLNSN-----HKTCPKTGQI---LDHLSLAPNYALRNLIVQWCEK  338 (643)
Q Consensus       268 ~~p~~f~Cpi~~~~m~dPv~~~-~g~t~~r~~I~~w~~~~-----~~~cP~~~~~---l~~~~l~pn~~lr~lI~~w~~~  338 (643)
                      ..+++|.||||+++|+|||+++ |||+|||.||++||..+     ..+||+|+.+   +...+++||..|+.+|..|+..
T Consensus         3 ~~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~   82 (94)
T 2yu4_A            3 SGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKK   82 (94)
T ss_dssp             SCSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTT
T ss_pred             CCCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHH
Confidence            3578999999999999999996 99999999999999853     4689995544   8889999999999999999987


Q ss_pred             cc
Q 006494          339 NN  340 (643)
Q Consensus       339 ~~  340 (643)
                      ++
T Consensus        83 ~~   84 (94)
T 2yu4_A           83 RH   84 (94)
T ss_dssp             CC
T ss_pred             hc
Confidence            65

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A

Probab=99.66  E-value=8.2e-17  Score=183.19  Aligned_cols=75  Identities=32%  Similarity=0.418  Sum_probs=70.2

Q ss_pred             CCCCCCcccCccCcccccCCeecCCc-ccccHHhHHHHHhcCCCCCCCCCcccCCCCCCchhhhHHHHHHHHhhccc
Q 006494          266 TMLVPHEFLCPVTLEIMTDPVIVATG-QTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLIVQWCEKNNV  341 (643)
Q Consensus       266 ~~~~p~~f~Cpi~~~~m~dPv~~~~g-~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~~~~~  341 (643)
                      ..++|++|.|||++++|+|||++|+| +||||.+|++|+.. +.+||+|+++|.+..++||+.+|..|++||.+++.
T Consensus       885 ~~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~~~~  960 (968)
T 3m62_A          885 YGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKLEDVTPNEELRQKILCFKKQKKE  960 (968)
T ss_dssp             HCCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHHT
T ss_pred             ccCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCcccccccHHHHHHHHHHHHHHHh
Confidence            35799999999999999999999997 79999999999997 67999999999999999999999999999998753

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=99.57  E-value=4.7e-16  Score=119.69  Aligned_cols=55  Identities=15%  Similarity=0.343  Sum_probs=50.4

Q ss_pred             cccCccCcccccCCeec-CCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCchhh
Q 006494          272 EFLCPVTLEIMTDPVIV-ATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYA  327 (643)
Q Consensus       272 ~f~Cpi~~~~m~dPv~~-~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~  327 (643)
                      .|.||||+++|+|||++ +|||+|||.+|++|+.. +.+||+|+++|...+++||+.
T Consensus         3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~~~Lip~~~   58 (61)
T 2bay_A            3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVEIVP   58 (61)
T ss_dssp             -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGGCEECCC
T ss_pred             eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCChhhcEECcc
Confidence            58999999999999999 99999999999999986 357999999999999999864

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=99.53  E-value=9.7e-15  Score=123.08  Aligned_cols=76  Identities=29%  Similarity=0.455  Sum_probs=68.1

Q ss_pred             CCCCCcccCccCcccccCCeecC-CcccccHHhHHHHHhc-CCCCCCCCCccc-CCCCCCchhhhHHHHHHHHhhcccc
Q 006494          267 MLVPHEFLCPVTLEIMTDPVIVA-TGQTYERESIQRWLNS-NHKTCPKTGQIL-DHLSLAPNYALRNLIVQWCEKNNVE  342 (643)
Q Consensus       267 ~~~p~~f~Cpi~~~~m~dPv~~~-~g~t~~r~~I~~w~~~-~~~~cP~~~~~l-~~~~l~pn~~lr~lI~~w~~~~~~~  342 (643)
                      ..++++|.||||+++|.|||+++ |||+||+.||.+|+.. +...||.|+.++ ....+.||..++.+|+.|...+++.
T Consensus         8 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~~~   86 (92)
T 3ztg_A            8 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETGYT   86 (92)
T ss_dssp             CCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHTCC
T ss_pred             ccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHhHH
Confidence            46789999999999999999999 9999999999999974 457899999997 5678999999999999999877653

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.51  E-value=9.5e-13  Score=144.99  Aligned_cols=276  Identities=18%  Similarity=0.197  Sum_probs=220.7

Q ss_pred             hHHHHHHHHHhhcC-CCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCC--CHHHHHHHHHHHHhcccCh-
Q 006494          359 LIEEICSLIQNLSS-SQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYP--DSKIQEHTVTALLNLSLDE-  434 (643)
Q Consensus       359 ~~~~i~~Lv~~L~s-~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~nLs~~~-  434 (643)
                      ..++|+.|+..+.+ .-.+.|+.|+..|+.+++.   ++..+ ..++++.|+..|+.+  |.++...++.+|.++...+ 
T Consensus        19 ~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~---y~~~V-g~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~   94 (651)
T 3grl_A           19 EAETIQKLCDRVASSTLLDDRRNAVRALKSLSKK---YRLEV-GIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDE   94 (651)
T ss_dssp             HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT---TTTHH-HHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC-
T ss_pred             hhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHH---hHHHh-hhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCC
Confidence            35799999999974 5778999999999999864   44444 356899999999764  8888999999998864321 


Q ss_pred             h-----------------hHHHH-HhcCChHHHHHHHccCCHHHHHHHHHHHHHcccccc--ccchhhc-cCChHHHHHH
Q 006494          435 T-----------------NKRHI-AREGAIPAIIEILQNGTNEARENSAAALFSLSMLDE--NRVMVGN-LNGIPPLVNL  493 (643)
Q Consensus       435 ~-----------------~k~~i-~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~--~k~~i~~-~g~i~~Lv~l  493 (643)
                      .                 +...+ .+.+.++.|+.+|++.+..+|.++..+|..|+....  ++..|.. .++|+.|+++
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~l  174 (651)
T 3grl_A           95 EEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDL  174 (651)
T ss_dssp             -------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGG
T ss_pred             cccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHH
Confidence            1                 11223 367899999999999999999999999999975443  6777775 7999999999


Q ss_pred             cccCChhhHHHHHHHHHHhhcCCCchHHHHh-cCcHHHHHHHhccC----ChhhHHHHHHHHHHHhCC-hhhHHHHHhcC
Q 006494          494 LRYGSIRGKKDAATALFNLSINQSNKSRAIK-AGIIPSLLKLLEDK----ALGMVDEALSILQLLASH-PEGRNEIGRLS  567 (643)
Q Consensus       494 L~s~~~~~k~~A~~aL~nLs~~~en~~~iv~-~G~v~~Lv~lL~~~----~~~~~~~Al~iL~nLa~~-~~~~~~i~~~g  567 (643)
                      |.+....++-.|+..|.+|+.+..+.++++. .|+++.|+.++..+    ...+++.|+.+|.||..+ +.++..+.+.|
T Consensus       175 L~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~  254 (651)
T 3grl_A          175 LADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGS  254 (651)
T ss_dssp             GGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcC
Confidence            9999999999999999999998888888887 69999999999873    336899999999999997 67999999999


Q ss_pred             cHHHHHHHHhcCCh------HHHHH---HHHHHHHhccCC------HHHHHHHHHcCcHHHHHHHHhhC--CHHHHHHHH
Q 006494          568 FIETLVEIIKNGTP------KNKEC---ATSVLLELGLNN------SYFILAALQYGVYEHLVEITRCG--TNRGQRKAN  630 (643)
Q Consensus       568 ~i~~Lv~lL~~~s~------~~ke~---A~~~L~~L~~~~------~~~~~~~~~~g~i~~L~~ll~~g--~~~~k~~A~  630 (643)
                      +++.|..++..+.+      ..-.+   ++.++..|+..+      ..+...+.+.|++..|++++...  ...++..|.
T Consensus       255 ~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al  334 (651)
T 3grl_A          255 YIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETI  334 (651)
T ss_dssp             CGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHH
T ss_pred             CHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHH
Confidence            99999999975322      12223   667777777752      34667788899999999998755  567787777


Q ss_pred             HHHHHhhh
Q 006494          631 SLLQHMSK  638 (643)
Q Consensus       631 ~lL~~l~~  638 (643)
                      .++-.+.+
T Consensus       335 ~tla~~ir  342 (651)
T 3grl_A          335 NTVSEVIR  342 (651)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHh
Confidence            77776654

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=99.47  E-value=1.6e-13  Score=134.33  Aligned_cols=71  Identities=20%  Similarity=0.358  Sum_probs=64.3

Q ss_pred             CCCCcccCccCcccccCCeec-CCcccccHHhHHHHHhc-CCCCCCC--CCcccCCCCCCchhhhHHHHHHHHhh
Q 006494          268 LVPHEFLCPVTLEIMTDPVIV-ATGQTYERESIQRWLNS-NHKTCPK--TGQILDHLSLAPNYALRNLIVQWCEK  338 (643)
Q Consensus       268 ~~p~~f~Cpi~~~~m~dPv~~-~~g~t~~r~~I~~w~~~-~~~~cP~--~~~~l~~~~l~pn~~lr~lI~~w~~~  338 (643)
                      ....+|+||||+++|+|||+. .|||+|||.||.+||.. +..+||+  |++++...++.||..|+.+|..|..+
T Consensus       177 ~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~r  251 (267)
T 3htk_C          177 GGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMK  251 (267)
T ss_dssp             SSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHHH
T ss_pred             CCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHHH
Confidence            457899999999999999985 99999999999999986 3568999  99999999999999999999999764

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=99.42  E-value=7.8e-14  Score=124.38  Aligned_cols=70  Identities=17%  Similarity=0.319  Sum_probs=64.0

Q ss_pred             CCCcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCC-CCCCchhhhHHHHHHHHhh
Q 006494          269 VPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDH-LSLAPNYALRNLIVQWCEK  338 (643)
Q Consensus       269 ~p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~-~~l~pn~~lr~lI~~w~~~  338 (643)
                      +++++.||||+++|.+||+++|||+||+.||.+|+..+...||.|+.++.. ..+.+|..++.++..|.-.
T Consensus        49 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~  119 (124)
T 3fl2_A           49 VEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPG  119 (124)
T ss_dssp             HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTT
T ss_pred             CccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHccc
Confidence            357899999999999999999999999999999999766799999999987 7899999999999998753

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=99.38  E-value=2e-13  Score=125.59  Aligned_cols=69  Identities=20%  Similarity=0.379  Sum_probs=64.0

Q ss_pred             CCCcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCCC-CCCchhhhHHHHHHHHh
Q 006494          269 VPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHL-SLAPNYALRNLIVQWCE  337 (643)
Q Consensus       269 ~p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~-~l~pn~~lr~lI~~w~~  337 (643)
                      ++++|.||||+++|.+||+++|||+||+.||.+|+..+..+||.|+.++... .+.+|..++.++..|..
T Consensus        75 l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p  144 (150)
T 1z6u_A           75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFP  144 (150)
T ss_dssp             HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHST
T ss_pred             CccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhh
Confidence            4578999999999999999999999999999999998667899999999987 89999999999998874

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.35  E-value=6.8e-11  Score=130.32  Aligned_cols=280  Identities=14%  Similarity=0.079  Sum_probs=215.6

Q ss_pred             hHHHHHHHHHhhcC--CCHHHHHHHHHHHHHhhhhChh-----------------hH-HHHHhhCChHHHHHHhcCCCHH
Q 006494          359 LIEEICSLIQNLSS--SQLNIKRDSVMKIRMLSKENPD-----------------NR-ILIANNGGIRPLVQLLSYPDSK  418 (643)
Q Consensus       359 ~~~~i~~Lv~~L~s--~~~~~~~~Al~~L~~La~~~~~-----------------~r-~~i~~~g~i~~Lv~lL~~~~~~  418 (643)
                      ...+++.|+..|+.  .|.+....++..|.++...++.                 +. ..+.+.+.|+.|+.+|...+..
T Consensus        58 g~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~  137 (651)
T 3grl_A           58 GIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFH  137 (651)
T ss_dssp             HHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHH
T ss_pred             hhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHH
Confidence            45678999999975  4777777888888776543332                 11 1234568899999999999999


Q ss_pred             HHHHHHHHHHhcccC-h-hhHHHHH-hcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhc-cCChHHHHHHc
Q 006494          419 IQEHTVTALLNLSLD-E-TNKRHIA-REGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGN-LNGIPPLVNLL  494 (643)
Q Consensus       419 ~~~~a~~~L~nLs~~-~-~~k~~i~-~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~-~g~i~~Lv~lL  494 (643)
                      ++.+++..|..|+.+ + .++..|. ..++++.|+.+|++....+|..+..+|.+|+..+..-.+++. .|+++.|++++
T Consensus       138 vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii  217 (651)
T 3grl_A          138 VRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDII  217 (651)
T ss_dssp             HHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHH
Confidence            999999999998854 3 3788888 569999999999999999999999999999987776555555 79999999999


Q ss_pred             ccCC----hhhHHHHHHHHHHhhcC-CCchHHHHhcCcHHHHHHHhccCChh------hH---HHHHHHHHHHhCC----
Q 006494          495 RYGS----IRGKKDAATALFNLSIN-QSNKSRAIKAGIIPSLLKLLEDKALG------MV---DEALSILQLLASH----  556 (643)
Q Consensus       495 ~s~~----~~~k~~A~~aL~nLs~~-~en~~~iv~~G~v~~Lv~lL~~~~~~------~~---~~Al~iL~nLa~~----  556 (643)
                      +.+.    ..+..+++.+|.||..+ ..|+..+.+.|+++.|..+|..+...      ..   ..++.++..|+..    
T Consensus       218 ~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~  297 (651)
T 3grl_A          218 TEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPP  297 (651)
T ss_dssp             HHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCH
T ss_pred             HhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            7643    36778999999999985 45899999999999999999653221      22   2367788888775    


Q ss_pred             ---hhhHHHHHhcCcHHHHHHHHhcC--ChHHHHHHHHHHHHhccCCHHHHHHHHHcC-----cHHHHHH----HHhhC-
Q 006494          557 ---PEGRNEIGRLSFIETLVEIIKNG--TPKNKECATSVLLELGLNNSYFILAALQYG-----VYEHLVE----ITRCG-  621 (643)
Q Consensus       557 ---~~~~~~i~~~g~i~~Lv~lL~~~--s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g-----~i~~L~~----ll~~g-  621 (643)
                         ..++..+.+.|++..|++++...  +...+..|+.++..+.++++.....+.+..     ..|.++.    ++.+. 
T Consensus       298 ~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~  377 (651)
T 3grl_A          298 GATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQ  377 (651)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTS
T ss_pred             CCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccc
Confidence               24688889999999999999864  578899999999999999998777766532     1233333    34333 


Q ss_pred             CHHHHHHHHHHHHHhhh
Q 006494          622 TNRGQRKANSLLQHMSK  638 (643)
Q Consensus       622 ~~~~k~~A~~lL~~l~~  638 (643)
                      ....|-.|..+++.+..
T Consensus       378 ~~~lR~Aa~~cl~ay~~  394 (651)
T 3grl_A          378 PFVLRCAVLYCFQCFLY  394 (651)
T ss_dssp             CHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHHHh
Confidence            56778888888886653

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.29  E-value=8.3e-13  Score=112.77  Aligned_cols=70  Identities=17%  Similarity=0.315  Sum_probs=64.0

Q ss_pred             CCCcccCccCcccccCCeec-CCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCchhhhHHHHHHHHhhc
Q 006494          269 VPHEFLCPVTLEIMTDPVIV-ATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLIVQWCEKN  339 (643)
Q Consensus       269 ~p~~f~Cpi~~~~m~dPv~~-~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~~~  339 (643)
                      +++++.||||++.|.+||++ +|||+||+.||.+|+.. +.+||.|+.++....+.||..++.+++.|....
T Consensus        19 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~   89 (99)
T 2y43_A           19 IDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTEPDLKNNRILDELVKSLNFAR   89 (99)
T ss_dssp             HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred             CCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCChhhCCcCHHHHHHHHHHHHHH
Confidence            35789999999999999998 89999999999999996 579999999999888999999999999997643

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.26  E-value=2e-12  Score=110.44  Aligned_cols=70  Identities=19%  Similarity=0.285  Sum_probs=62.8

Q ss_pred             CCCcccCccCcccccCCee-cCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCchhhhHHHHHHHHhh
Q 006494          269 VPHEFLCPVTLEIMTDPVI-VATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLIVQWCEK  338 (643)
Q Consensus       269 ~p~~f~Cpi~~~~m~dPv~-~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~~  338 (643)
                      +.+++.||||+++|.+||+ ++|||+||+.||.+|+..+..+||.|+.++....+.+|..+..+++..-..
T Consensus        19 l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l   89 (100)
T 3lrq_A           19 IAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTL   89 (100)
T ss_dssp             HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHHH
T ss_pred             CCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHHH
Confidence            4578999999999999999 999999999999999998667999999999999999999888887766543

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.26  E-value=3.9e-13  Score=109.68  Aligned_cols=66  Identities=27%  Similarity=0.474  Sum_probs=58.6

Q ss_pred             CCCCCcccCccCcccccCCeecCCcccccHHhHHHHHhcC------CCCCCCCCcccCCCCCCchhhhHHHH
Q 006494          267 MLVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSN------HKTCPKTGQILDHLSLAPNYALRNLI  332 (643)
Q Consensus       267 ~~~p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~------~~~cP~~~~~l~~~~l~pn~~lr~lI  332 (643)
                      ..+++++.||||++.+.+|++++|||+||+.||.+|+...      ...||.|+.++....+.+|..+++++
T Consensus         7 ~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~lv   78 (79)
T 2egp_A            7 GNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLANIV   78 (79)
T ss_dssp             CCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCCCC
T ss_pred             hhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHHhh
Confidence            3567899999999999999999999999999999999863      57899999999988899998876653

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.24  E-value=2.6e-10  Score=115.88  Aligned_cols=225  Identities=11%  Similarity=0.013  Sum_probs=158.6

Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHH
Q 006494          361 EEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHI  440 (643)
Q Consensus       361 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i  440 (643)
                      ..++.|+..|.+.++.++..|+..|..+..           .++++.|+.+|.++++.++..|+.+|.++...+..... 
T Consensus        23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~-   90 (280)
T 1oyz_A           23 LNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDN-   90 (280)
T ss_dssp             SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHH-
T ss_pred             hhHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchH-
Confidence            468899999999999999999999988751           23678899999999999999999999887643322111 


Q ss_pred             HhcCChHHHH-HHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCch
Q 006494          441 AREGAIPAII-EILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNK  519 (643)
Q Consensus       441 ~~~g~i~~Lv-~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~  519 (643)
                          .++.+. .++++.++.+|..++.+|..+...+.    .....+++.|+.++.+.++.++..|+.+|.++..     
T Consensus        91 ----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-----  157 (280)
T 1oyz_A           91 ----VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND-----  157 (280)
T ss_dssp             ----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-------
T ss_pred             ----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-----
Confidence                223333 23456788899999999988753221    1123467888888888888888888888877643     


Q ss_pred             HHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCH
Q 006494          520 SRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNS  599 (643)
Q Consensus       520 ~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~  599 (643)
                           .++++.|+.++.+++..+...|+.+|..+....        ..+++.|+.++.+.++.+|..|+.+|..+..   
T Consensus       158 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~--------~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~---  221 (280)
T 1oyz_A          158 -----KATIPLLINLLKDPNGDVRNWAAFAININKYDN--------SDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD---  221 (280)
T ss_dssp             ------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC--------HHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC---
T ss_pred             -----HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc--------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC---
Confidence                 357888888888888888888888888874321        2456778888888888888888888877752   


Q ss_pred             HHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 006494          600 YFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHM  636 (643)
Q Consensus       600 ~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l  636 (643)
                              ..+++.|..++.+.+  ++..|...|..+
T Consensus       222 --------~~~~~~L~~~l~d~~--vr~~a~~aL~~i  248 (280)
T 1oyz_A          222 --------KRVLSVLCDELKKNT--VYDDIIEAAGEL  248 (280)
T ss_dssp             --------GGGHHHHHHHHTSSS--CCHHHHHHHHHH
T ss_pred             --------HhhHHHHHHHhcCcc--HHHHHHHHHHhc
Confidence                    234555555554432  444444444444

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.24  E-value=2.5e-12  Score=106.25  Aligned_cols=66  Identities=26%  Similarity=0.506  Sum_probs=58.9

Q ss_pred             CCCCCcccCccCcccccCCeecCCcccccHHhHHHHHhcC-----CCCCCCCCcccCCCCCCchhhhHHHH
Q 006494          267 MLVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSN-----HKTCPKTGQILDHLSLAPNYALRNLI  332 (643)
Q Consensus       267 ~~~p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~-----~~~cP~~~~~l~~~~l~pn~~lr~lI  332 (643)
                      ..+.++|.||||++.+.+|++++|||+||+.||.+|+...     ...||.|+.++....+.||..++.+|
T Consensus        14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~v   84 (85)
T 2ecw_A           14 EMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANIV   84 (85)
T ss_dssp             CCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSSC
T ss_pred             HhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHhh
Confidence            4567899999999999999999999999999999999863     57899999999988999998877654

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=99.24  E-value=2.9e-12  Score=111.21  Aligned_cols=68  Identities=13%  Similarity=0.353  Sum_probs=61.0

Q ss_pred             CCCcccCccCcccccCCeec-CCcccccHHhHHHHHhcCCCCCCCCCcccCCC----CCCchhhhHHHHHHHHh
Q 006494          269 VPHEFLCPVTLEIMTDPVIV-ATGQTYERESIQRWLNSNHKTCPKTGQILDHL----SLAPNYALRNLIVQWCE  337 (643)
Q Consensus       269 ~p~~f~Cpi~~~~m~dPv~~-~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~----~l~pn~~lr~lI~~w~~  337 (643)
                      +++++.||||+++|.+||++ +|||+||+.||.+|+.. ..+||.|+.++...    .+.+|..++.++..|..
T Consensus        12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~   84 (108)
T 2ckl_A           12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVP   84 (108)
T ss_dssp             HGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHST
T ss_pred             cCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh-CCcCcCCCccccccCcccccCcCHHHHHHHHHHhh
Confidence            46889999999999999998 99999999999999997 48899999999865    67889999999988753

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.23  E-value=3.4e-10  Score=109.86  Aligned_cols=190  Identities=19%  Similarity=0.239  Sum_probs=159.5

Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHH
Q 006494          360 IEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRH  439 (643)
Q Consensus       360 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~  439 (643)
                      ...++.|++.|.+.++.++..|+..|..+..           .++++.|+.+|.++++.++..|+.+|..+.        
T Consensus        18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~--------   78 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIG--------   78 (211)
T ss_dssp             GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC--------
T ss_pred             HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC--------
Confidence            4578999999999999999999999987652           357899999999999999999999998764        


Q ss_pred             HHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCch
Q 006494          440 IAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNK  519 (643)
Q Consensus       440 i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~  519 (643)
                        ..++++.|+..|++.++.+|..|+.+|..+.          ..++++.|+.++.+.++.++..|+.+|.++..     
T Consensus        79 --~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----  141 (211)
T 3ltm_A           79 --DERAVEPLIKALKDEDGWVRQSAAVALGQIG----------DERAVEPLIKALKDEDWFVRIAAAFALGEIGD-----  141 (211)
T ss_dssp             --CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----
T ss_pred             --CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-----
Confidence              3467899999999999999999999998874          34688999999999999999999999998842     


Q ss_pred             HHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCH
Q 006494          520 SRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNS  599 (643)
Q Consensus       520 ~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~  599 (643)
                           ..+++.|..++.++++.+...|+.+|..+..          ..+++.|..++.+.++.+|..|..+|..+.....
T Consensus       142 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~  206 (211)
T 3ltm_A          142 -----ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFNH  206 (211)
T ss_dssp             -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred             -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence                 3578999999988889999999999998853          3578889999999999999999999998887654


Q ss_pred             H
Q 006494          600 Y  600 (643)
Q Consensus       600 ~  600 (643)
                      .
T Consensus       207 ~  207 (211)
T 3ltm_A          207 H  207 (211)
T ss_dssp             -
T ss_pred             C
Confidence            3

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.23  E-value=5.1e-10  Score=108.60  Aligned_cols=188  Identities=19%  Similarity=0.198  Sum_probs=160.3

Q ss_pred             hCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchh
Q 006494          402 NGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMV  481 (643)
Q Consensus       402 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i  481 (643)
                      .+.++.|+..|.++++.++..|+..|..+.          ..++++.|+.+|.++++.+|..|+.+|..+.         
T Consensus        18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~----------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~---------   78 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIG----------DERAVEPLIKALKDEDAWVRRAAADALGQIG---------   78 (211)
T ss_dssp             GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CGGGHHHHHHHTTCSCHHHHHHHHHHHHHHC---------
T ss_pred             HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------CccHHHHHHHHHcCCCHHHHHHHHHHHHhhC---------
Confidence            457899999999999999999999998754          2468999999999999999999999998864         


Q ss_pred             hccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHH
Q 006494          482 GNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRN  561 (643)
Q Consensus       482 ~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~  561 (643)
                       ..++++.|+.+|.+.++.++..|+.+|..+..          .++++.|+++|.++++.+...|+.+|..+..      
T Consensus        79 -~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------  141 (211)
T 3ltm_A           79 -DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD------  141 (211)
T ss_dssp             -CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------
T ss_pred             -CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC------
Confidence             34688999999999999999999999998753          3588999999998999999999999998853      


Q ss_pred             HHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhhcc
Q 006494          562 EIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSKRE  640 (643)
Q Consensus       562 ~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~~~  640 (643)
                          ...++.|..++.+.++.++..|+.+|..+..           ..+++.|..++.++++.++..|...|..+....
T Consensus       142 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~  205 (211)
T 3ltm_A          142 ----ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFN  205 (211)
T ss_dssp             ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred             ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence                3578999999999999999999999998853           346888999999999999999999999887643

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=99.23  E-value=3e-12  Score=113.01  Aligned_cols=69  Identities=19%  Similarity=0.385  Sum_probs=63.1

Q ss_pred             CCCCCcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCchhhhHHHHHHH
Q 006494          267 MLVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLIVQW  335 (643)
Q Consensus       267 ~~~p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w  335 (643)
                      ..++++|.||||+++|.+||+++|||+||+.||.+|+..+..+||.|+.++....+.|+..++..|..+
T Consensus        13 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l   81 (118)
T 3hct_A           13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL   81 (118)
T ss_dssp             SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred             cCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccc
Confidence            467889999999999999999999999999999999997666999999999988889999998888765

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.22  E-value=9.1e-12  Score=97.76  Aligned_cols=56  Identities=13%  Similarity=0.269  Sum_probs=49.9

Q ss_pred             CCCCCcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCC
Q 006494          267 MLVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSL  322 (643)
Q Consensus       267 ~~~p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l  322 (643)
                      ..+++++.||||++.+.+||+++|||+||+.||.+|+..+..+||.|+.++...++
T Consensus        10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i   65 (66)
T 2ecy_A           10 KTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV   65 (66)
T ss_dssp             CSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred             hcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence            35678999999999999999999999999999999997667899999999876543

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.22  E-value=2.9e-12  Score=105.94  Aligned_cols=66  Identities=21%  Similarity=0.486  Sum_probs=59.0

Q ss_pred             CCCCCcccCccCcccccCCeecCCcccccHHhHHHHHhc-----CCCCCCCCCcccCCCCCCchhhhHHHH
Q 006494          267 MLVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNS-----NHKTCPKTGQILDHLSLAPNYALRNLI  332 (643)
Q Consensus       267 ~~~p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~-----~~~~cP~~~~~l~~~~l~pn~~lr~lI  332 (643)
                      ..+++++.||||++.+.+|++++|||+||+.||.+|+..     +...||.|+.++....+.||..++.+|
T Consensus        14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~v   84 (85)
T 2ecv_A           14 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANIV   84 (85)
T ss_dssp             CCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCCCC
T ss_pred             HHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHHhh
Confidence            456789999999999999999999999999999999986     367899999999998999998887654

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=99.21  E-value=2.1e-12  Score=113.41  Aligned_cols=69  Identities=19%  Similarity=0.287  Sum_probs=61.7

Q ss_pred             CCCCcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCC-------CCCCchhhhHHHHHHHH
Q 006494          268 LVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDH-------LSLAPNYALRNLIVQWC  336 (643)
Q Consensus       268 ~~p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~-------~~l~pn~~lr~lI~~w~  336 (643)
                      ...++|.||||++++.+||+++|||+||+.||.+|+..+...||.|+.++..       ..+.+|..+..+|..|.
T Consensus        11 ~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~   86 (115)
T 3l11_A           11 PSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHY   86 (115)
T ss_dssp             CCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHS
T ss_pred             CCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHC
Confidence            3457899999999999999999999999999999998877899999999863       56778999999998886

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=99.21  E-value=3.8e-12  Score=119.30  Aligned_cols=70  Identities=23%  Similarity=0.427  Sum_probs=62.3

Q ss_pred             CCCCcccCccCcccccCCeec-CCcccccHHhHHHHHhcCCCCCCCCCcccC-CCCCCchhhhHHHHHHHHh
Q 006494          268 LVPHEFLCPVTLEIMTDPVIV-ATGQTYERESIQRWLNSNHKTCPKTGQILD-HLSLAPNYALRNLIVQWCE  337 (643)
Q Consensus       268 ~~p~~f~Cpi~~~~m~dPv~~-~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~-~~~l~pn~~lr~lI~~w~~  337 (643)
                      .+.+++.||||++.+.+||++ +|||+||+.||.+|+..++.+||.|+.++. ...+.||..++.+|..|..
T Consensus        50 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~  121 (165)
T 2ckl_B           50 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYP  121 (165)
T ss_dssp             CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-
T ss_pred             hCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHc
Confidence            456789999999999999997 999999999999999987889999999985 4568899999999998854

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.20  E-value=5.4e-12  Score=114.55  Aligned_cols=64  Identities=17%  Similarity=0.363  Sum_probs=52.8

Q ss_pred             CCcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCchhhhHHHHHHHH
Q 006494          270 PHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLIVQWC  336 (643)
Q Consensus       270 p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~  336 (643)
                      .+++.||||++.|.|||+++|||+||+.||.+|+.. +.+||.|+.++...  .+|..+...|..+.
T Consensus        51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~--~~~~~~~~~i~~~~  114 (138)
T 4ayc_A           51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR-KIECPICRKDIKSK--TYSLVLDNCINKMV  114 (138)
T ss_dssp             HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCCE--EECHHHHHHHHHHH
T ss_pred             cccCCCcccCcccCCceECCCCCCccHHHHHHHHHc-CCcCCCCCCcCCCC--CCccchhHHHHHHH
Confidence            357899999999999999999999999999999986 57899999988643  34555556665554

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.20  E-value=6e-12  Score=103.16  Aligned_cols=61  Identities=13%  Similarity=0.171  Sum_probs=52.8

Q ss_pred             CCCCcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCchhhhHH
Q 006494          268 LVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRN  330 (643)
Q Consensus       268 ~~p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~  330 (643)
                      ...+++.||||++.+.+||+++|||+||+.||.+|+.. ..+||.|+.++. ..+.||..+..
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~-~~~~~~~~l~~   71 (81)
T 2csy_A           11 EEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG-GIFNPAKELMA   71 (81)
T ss_dssp             CCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC-SCCEECHHHHH
T ss_pred             cCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc-ccCCcHHHHHH
Confidence            45678999999999999999999999999999999986 678999999997 56777755433

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.20  E-value=1.2e-09  Score=105.10  Aligned_cols=187  Identities=19%  Similarity=0.239  Sum_probs=160.6

Q ss_pred             hHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHH
Q 006494          359 LIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKR  438 (643)
Q Consensus       359 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~  438 (643)
                      ..+..+.+++.|.+.++.++..|+..|..+..           .++++.|+.+|.++++.++..|+.+|..+.       
T Consensus        12 ~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~-------   73 (201)
T 3ltj_A           12 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIG-------   73 (201)
T ss_dssp             CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC-------
T ss_pred             CCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC-------
Confidence            35788999999999999999999999987652           257899999999999999999999998754       


Q ss_pred             HHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCc
Q 006494          439 HIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSN  518 (643)
Q Consensus       439 ~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en  518 (643)
                         ...+++.|+..|.+.++.+|..|+.+|..+.          ...+++.|+.++.+.++.++..|+.+|.++..    
T Consensus        74 ---~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----  136 (201)
T 3ltj_A           74 ---DERAVEPLIKALKDEDGWVRQSAAVALGQIG----------DERAVEPLIKALKDEDWFVRIAAAFALGEIGD----  136 (201)
T ss_dssp             ---CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----
T ss_pred             ---CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----
Confidence               3457899999999999999999999998863          34588999999999999999999999998852    


Q ss_pred             hHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhcc
Q 006494          519 KSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGL  596 (643)
Q Consensus       519 ~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~  596 (643)
                            .++++.|+.++.++++.+...|+.+|..+..          ..+++.|..++.+.++.++..|..+|..+-.
T Consensus       137 ------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~  198 (201)
T 3ltj_A          137 ------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHKS  198 (201)
T ss_dssp             ------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC-
T ss_pred             ------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence                  4688999999998888999999999998832          3478889999999999999999999987653

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.20  E-value=1.3e-11  Score=99.23  Aligned_cols=59  Identities=32%  Similarity=0.488  Sum_probs=49.4

Q ss_pred             CCCCCcccCccCcccccCCeecC-CcccccHHhHHHHHhcC-CCCCCCCCcccC-CCCCCch
Q 006494          267 MLVPHEFLCPVTLEIMTDPVIVA-TGQTYERESIQRWLNSN-HKTCPKTGQILD-HLSLAPN  325 (643)
Q Consensus       267 ~~~p~~f~Cpi~~~~m~dPv~~~-~g~t~~r~~I~~w~~~~-~~~cP~~~~~l~-~~~l~pn  325 (643)
                      ..+++++.||||+++|.+||+++ |||+||+.||.+|+... ..+||.|++++. ...+.+|
T Consensus        10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n   71 (74)
T 2yur_A           10 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGP   71 (74)
T ss_dssp             CCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCT
T ss_pred             ccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccC
Confidence            45789999999999999999999 99999999999999853 468999999754 3334444

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.19  E-value=5.3e-12  Score=111.17  Aligned_cols=68  Identities=15%  Similarity=0.227  Sum_probs=62.3

Q ss_pred             CCCcccCccCcccccCCeec-CCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCchhhhHHHHHHHHhhc
Q 006494          269 VPHEFLCPVTLEIMTDPVIV-ATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLIVQWCEKN  339 (643)
Q Consensus       269 ~p~~f~Cpi~~~~m~dPv~~-~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~~~  339 (643)
                      +.+++.||||+++|.+||++ +|||+||+.||.+|+.   ..||.|+.++....+.||..++.++..|....
T Consensus        19 l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~~   87 (117)
T 1jm7_B           19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINRQLDSMIQLCSKLR   87 (117)
T ss_dssp             HHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHHH
T ss_pred             chhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCccccccccHHHHHHHHHHHHHH
Confidence            35789999999999999999 9999999999999997   68999999998889999999999999886543

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.17  E-value=1.2e-09  Score=105.11  Aligned_cols=185  Identities=19%  Similarity=0.207  Sum_probs=159.4

Q ss_pred             CChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhh
Q 006494          403 GGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVG  482 (643)
Q Consensus       403 g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~  482 (643)
                      +..+.++..|+++++.++..|+.+|..+.          ..+.++.|+..|+++++.+|..|+.+|..+.          
T Consensus        14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~----------~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~----------   73 (201)
T 3ltj_A           14 EKVEMYIKNLQDDSYYVRRAAAYALGKIG----------DERAVEPLIKALKDEDAWVRRAAADALGQIG----------   73 (201)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHC----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------
T ss_pred             cchHHHHHHhcCCCHHHHHHHHHHHHhcC----------ChhHHHHHHHHHcCCCHHHHHHHHHHHHhhC----------
Confidence            45688999999999999999999998754          2367899999999999999999999998763          


Q ss_pred             ccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHH
Q 006494          483 NLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNE  562 (643)
Q Consensus       483 ~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~  562 (643)
                      ..++++.|+.+|.+.++.++..|+.+|.++..          ..+++.|+.+|.++++.++..|+.+|..+..       
T Consensus        74 ~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------  136 (201)
T 3ltj_A           74 DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-------  136 (201)
T ss_dssp             CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-------
T ss_pred             CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------
Confidence            34688999999999999999999999998743          3588999999998899999999999998753       


Q ss_pred             HHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494          563 IGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK  638 (643)
Q Consensus       563 i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~  638 (643)
                         ...++.|..++.+.++.++..|+.+|..+..           ..+++.|..++.+.++.++..|...|..+..
T Consensus       137 ---~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~  198 (201)
T 3ltj_A          137 ---ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHKS  198 (201)
T ss_dssp             ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC-
T ss_pred             ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence               4688999999999999999999999998842           2368889999999999999999999988764

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.16  E-value=1.5e-11  Score=107.38  Aligned_cols=68  Identities=19%  Similarity=0.397  Sum_probs=60.4

Q ss_pred             CCcccCccCcccccCCeecCCcccccHHhHHHHHhcC--CCCCCCCCcccCCCCCCchhhhHHHHHHHHh
Q 006494          270 PHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSN--HKTCPKTGQILDHLSLAPNYALRNLIVQWCE  337 (643)
Q Consensus       270 p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~--~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~  337 (643)
                      ++++.||||++.+.+|++++|||+||+.||.+|+..+  ..+||.|+.++....+.+|..+..++..+..
T Consensus        19 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~   88 (112)
T 1jm7_A           19 QKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLK   88 (112)
T ss_dssp             HHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHH
T ss_pred             cCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHHH
Confidence            4678999999999999999999999999999999853  3589999999999999999888888877654

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.16  E-value=3e-11  Score=96.52  Aligned_cols=58  Identities=16%  Similarity=0.300  Sum_probs=52.2

Q ss_pred             CCCCCcccCccCcccccCCeec-CCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCch
Q 006494          267 MLVPHEFLCPVTLEIMTDPVIV-ATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPN  325 (643)
Q Consensus       267 ~~~p~~f~Cpi~~~~m~dPv~~-~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn  325 (643)
                      ..+.+++.||||++.+.|||++ +|||+||+.||.+|+.. ..+||.|+.++...++.+|
T Consensus        10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~   68 (72)
T 2djb_A           10 SELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQPLSG   68 (72)
T ss_dssp             CCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCSCCC
T ss_pred             hhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCccccccc
Confidence            4567899999999999999997 99999999999999987 5799999999988777665

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.09  E-value=6.1e-11  Score=94.94  Aligned_cols=55  Identities=20%  Similarity=0.454  Sum_probs=48.8

Q ss_pred             CCCCCcccCccCcccccCCeecCCcccccHHhHHHHHhc--CCCCCCCCCcccCCCC
Q 006494          267 MLVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNS--NHKTCPKTGQILDHLS  321 (643)
Q Consensus       267 ~~~p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~--~~~~cP~~~~~l~~~~  321 (643)
                      ..+++++.||||++.+.+||+++|||+||+.||.+|+..  +...||.|++++...+
T Consensus        15 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~   71 (73)
T 2ysl_A           15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA   71 (73)
T ss_dssp             CCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred             HhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence            456789999999999999999999999999999999973  4678999999887654

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.09  E-value=5.2e-11  Score=93.08  Aligned_cols=55  Identities=16%  Similarity=0.334  Sum_probs=49.7

Q ss_pred             CcccCccCcc-cccCC----eecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCch
Q 006494          271 HEFLCPVTLE-IMTDP----VIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPN  325 (643)
Q Consensus       271 ~~f~Cpi~~~-~m~dP----v~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn  325 (643)
                      +++.||||++ .+.+|    ++++|||+||+.||.+|+..+...||.|+.++...++.|+
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~   61 (65)
T 1g25_A            2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQ   61 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEE
T ss_pred             CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceee
Confidence            5789999999 99999    5789999999999999998777889999999988877765

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=99.07  E-value=1.6e-11  Score=111.55  Aligned_cols=67  Identities=18%  Similarity=0.258  Sum_probs=56.4

Q ss_pred             CCCCCcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCC---------CCCCchhhhHHHHH
Q 006494          267 MLVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDH---------LSLAPNYALRNLIV  333 (643)
Q Consensus       267 ~~~p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~---------~~l~pn~~lr~lI~  333 (643)
                      ..++++|.||||+++|.+||.++|||+||+.||.+|+..+..+||.|+.++..         ..+.|+..+++.|.
T Consensus        26 ~~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~  101 (141)
T 3knv_A           26 TKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVE  101 (141)
T ss_dssp             GGCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHH
T ss_pred             ccCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHc
Confidence            35789999999999999999999999999999999999876799999987532         24557777777664

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=99.07  E-value=4e-11  Score=112.91  Aligned_cols=69  Identities=19%  Similarity=0.385  Sum_probs=62.6

Q ss_pred             CCCCCcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCchhhhHHHHHHH
Q 006494          267 MLVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLIVQW  335 (643)
Q Consensus       267 ~~~p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w  335 (643)
                      ..++++|.||||+++|.+||+++|||+||+.||.+|+..+..+||.|+.++....+.|+..++..|.++
T Consensus        13 ~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l   81 (170)
T 3hcs_A           13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL   81 (170)
T ss_dssp             SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred             cCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhc
Confidence            467899999999999999999999999999999999987667999999999988889998888887653

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=99.07  E-value=3.3e-11  Score=105.91  Aligned_cols=66  Identities=20%  Similarity=0.264  Sum_probs=55.8

Q ss_pred             CCCcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCc-hhhhHHHHHH
Q 006494          269 VPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAP-NYALRNLIVQ  334 (643)
Q Consensus       269 ~p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~p-n~~lr~lI~~  334 (643)
                      ++++|.||||+++|.|||+++|||+||+.||.+|+..+..+||.|+.++...++.+ +..+..++..
T Consensus        20 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~   86 (116)
T 1rmd_A           20 FVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNS   86 (116)
T ss_dssp             HHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHH
T ss_pred             ccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHH
Confidence            45689999999999999999999999999999999976679999999998777654 5555555543

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.06  E-value=1.2e-10  Score=90.39  Aligned_cols=47  Identities=23%  Similarity=0.550  Sum_probs=42.3

Q ss_pred             CCCCCcccCccCcccccCCeecCCcccccHHhHHHHHhc--CCCCCCCC
Q 006494          267 MLVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNS--NHKTCPKT  313 (643)
Q Consensus       267 ~~~p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~--~~~~cP~~  313 (643)
                      ..+.+++.||||++.+.+||+++|||+||+.||.+|+..  +..+||.|
T Consensus        15 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             HhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            356789999999999999999999999999999999984  45689986

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.03  E-value=1.1e-10  Score=92.89  Aligned_cols=58  Identities=19%  Similarity=0.438  Sum_probs=51.8

Q ss_pred             CCCCcccCccCcccccCC-------eecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCchh
Q 006494          268 LVPHEFLCPVTLEIMTDP-------VIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNY  326 (643)
Q Consensus       268 ~~p~~f~Cpi~~~~m~dP-------v~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~  326 (643)
                      ...+++.||||++.+.+|       ++++|||+||+.||.+|+.. +.+||.|+.++...++.|++
T Consensus         6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~   70 (71)
T 3ng2_A            6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIY   70 (71)
T ss_dssp             CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCCCSCCCCC
T ss_pred             CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccChhheeecc
Confidence            345789999999999999       89999999999999999987 47999999999988887764

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.02  E-value=6.5e-09  Score=105.44  Aligned_cols=201  Identities=15%  Similarity=0.058  Sum_probs=157.9

Q ss_pred             HhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccc
Q 006494          400 ANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRV  479 (643)
Q Consensus       400 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~  479 (643)
                      ...+.++.|+..|.++++.++..|+.+|.++.          ..+.++.|+.+|++.++.+|..|+.+|..+....... 
T Consensus        20 ~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~----------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~-   88 (280)
T 1oyz_A           20 CKKLNDDELFRLLDDHNSLKRISSARVLQLRG----------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE-   88 (280)
T ss_dssp             HHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH-
T ss_pred             HHHhhHHHHHHHHHcCCHHHHHHHHHHHHccC----------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc-
Confidence            34678999999999999999999999998875          2346889999999999999999999998886432210 


Q ss_pred             hhhccCChHHHHH-HcccCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChh
Q 006494          480 MVGNLNGIPPLVN-LLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPE  558 (643)
Q Consensus       480 ~i~~~g~i~~Lv~-lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~  558 (643)
                          ...++.|.+ ++.+.++.++..|+.+|.++......    ....+++.|+.++.++++.+...|+.+|.++..   
T Consensus        89 ----~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~---  157 (280)
T 1oyz_A           89 ----DNVFNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAISVIND---  157 (280)
T ss_dssp             ----HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----
T ss_pred             ----hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC---
Confidence                012233432 34667889999999999998742211    123468899999999999999999999987653   


Q ss_pred             hHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494          559 GRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK  638 (643)
Q Consensus       559 ~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~  638 (643)
                             .++++.|+.++.+.++.++..|+.+|..+...++         .+++.|..++.+.++.++..|...|..+..
T Consensus       158 -------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~  221 (280)
T 1oyz_A          158 -------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLSYRKD  221 (280)
T ss_dssp             --------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHTTC
T ss_pred             -------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Confidence                   3589999999999999999999999998864433         367888999999999999999999988764

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=98.96  E-value=3.1e-09  Score=125.11  Aligned_cols=273  Identities=14%  Similarity=0.077  Sum_probs=193.4

Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHH
Q 006494          360 IEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRH  439 (643)
Q Consensus       360 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~  439 (643)
                      ...++.+++.+.+.++.+|..|+..+..+....+..-.. .-.+.++.|+.++.+++++++..|+.+|.+++.....  .
T Consensus       173 ~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~-~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~--~  249 (852)
T 4fdd_A          173 NIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALML-HIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMD--R  249 (852)
T ss_dssp             HHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHT-SHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHH--H
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHH--H
Confidence            457888888899999999999999998877543321100 0124678888889999999999999999998753211  1


Q ss_pred             HH--hcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhc--cCChHHHHHHc-----------cc--------
Q 006494          440 IA--REGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGN--LNGIPPLVNLL-----------RY--------  496 (643)
Q Consensus       440 i~--~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~--~g~i~~Lv~lL-----------~s--------  496 (643)
                      +.  -.+.++.++..+++.+..++..|+.++..++.....+..+..  ...++.|+..+           .+        
T Consensus       250 ~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~d  329 (852)
T 4fdd_A          250 LLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGD  329 (852)
T ss_dssp             HGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC---------
T ss_pred             HHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccc
Confidence            11  124677788888888899999999999988754433332221  23566666666           22        


Q ss_pred             ---CChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHH
Q 006494          497 ---GSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLV  573 (643)
Q Consensus       497 ---~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv  573 (643)
                         .+..+++.|+.+|..|+...+.  .++ ..+++.+.+++.+.+..+++.|+.+|.+++........-.-.++++.++
T Consensus       330 d~~~~~~vr~~a~~~L~~la~~~~~--~~~-~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~  406 (852)
T 4fdd_A          330 DTISDWNLRKCSAAALDVLANVYRD--ELL-PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLI  406 (852)
T ss_dssp             ---CCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHH
T ss_pred             cccccchHHHHHHHHHHHHHHhccH--HHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence               1234688888999888863321  111 2467778888888888999999999999998743211111236789999


Q ss_pred             HHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494          574 EIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK  638 (643)
Q Consensus       574 ~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~  638 (643)
                      ..+.+.++.+|..|+.+|..++...+.......-.++++.|+..+.+.+++++..|...|..+.+
T Consensus       407 ~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~  471 (852)
T 4fdd_A          407 QCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEE  471 (852)
T ss_dssp             HHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999986432211111113578888988888899999999999998875

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.95  E-value=6.8e-10  Score=92.21  Aligned_cols=54  Identities=24%  Similarity=0.469  Sum_probs=48.1

Q ss_pred             CCCCCcccCccCcccccC----CeecCCcccccHHhHHHHHhcC--CCCCCCCCcccCCC
Q 006494          267 MLVPHEFLCPVTLEIMTD----PVIVATGQTYERESIQRWLNSN--HKTCPKTGQILDHL  320 (643)
Q Consensus       267 ~~~p~~f~Cpi~~~~m~d----Pv~~~~g~t~~r~~I~~w~~~~--~~~cP~~~~~l~~~  320 (643)
                      ..+.+++.||||++.+.+    |++++|||+||+.||.+|+..+  ..+||.|+.++...
T Consensus        10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   69 (88)
T 2ct2_A           10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT   69 (88)
T ss_dssp             CCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred             hhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence            456788999999999999    9999999999999999999864  47899999988654

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.95  E-value=5.3e-10  Score=85.04  Aligned_cols=46  Identities=30%  Similarity=0.666  Sum_probs=41.6

Q ss_pred             CCCCcccCccCcccccCCeecCCcccccHHhHHHHHhc--CCCCCCCC
Q 006494          268 LVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNS--NHKTCPKT  313 (643)
Q Consensus       268 ~~p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~--~~~~cP~~  313 (643)
                      .+.+++.||||++.+.+|++++|||+||+.||.+|+..  +..+||.|
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           11 NLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             CSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             ccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            46788999999999999999999999999999999875  56789986

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.93  E-value=3.6e-10  Score=89.89  Aligned_cols=50  Identities=14%  Similarity=0.135  Sum_probs=45.5

Q ss_pred             CCCcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCC
Q 006494          269 VPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDH  319 (643)
Q Consensus       269 ~p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~  319 (643)
                      ..+++.||||++.+.+||+++|||+||+.||.+|+.. +.+||+|+.++..
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~   61 (71)
T 2d8t_A           12 SLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWL-GKRCALCRQEIPE   61 (71)
T ss_dssp             SSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCCH
T ss_pred             CCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHC-CCcCcCcCchhCH
Confidence            4578999999999999999999999999999999987 4799999998764

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=98.92  E-value=1e-08  Score=120.68  Aligned_cols=271  Identities=15%  Similarity=0.109  Sum_probs=194.5

Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHH----hhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhh
Q 006494          361 EEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIA----NNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETN  436 (643)
Q Consensus       361 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~----~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~  436 (643)
                      +.++.|++.+.++++..+..++..|..+++..+..-..-.    -...++.++.+++++++.++..|+.+|.++......
T Consensus       128 ~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~  207 (852)
T 4fdd_A          128 DLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ  207 (852)
T ss_dssp             THHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccH
Confidence            4689999999999999999999999988865433211000    123567788888888999999999999887644322


Q ss_pred             HHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccc--cchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhc
Q 006494          437 KRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDEN--RVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSI  514 (643)
Q Consensus       437 k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~--k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~  514 (643)
                      ...-.-...++.++..+.++++++|..++.+|..++.....  +..+  .+.++.++.++.+.++.++..|+..+.+++.
T Consensus       208 ~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l--~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~  285 (852)
T 4fdd_A          208 ALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM--HNIVEYMLQRTQDQDENVALEACEFWLTLAE  285 (852)
T ss_dssp             HHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH--HHHHHHHHHHccCCcHHHHHHHHHHHHHHhc
Confidence            11111235778888888889999999999999998753321  1111  2467888888888888999999999999987


Q ss_pred             CCCchHHHHh---cCcHHHHHHHh-----------cc-----------CChhhHHHHHHHHHHHhCChhhHHHHHhcCcH
Q 006494          515 NQSNKSRAIK---AGIIPSLLKLL-----------ED-----------KALGMVDEALSILQLLASHPEGRNEIGRLSFI  569 (643)
Q Consensus       515 ~~en~~~iv~---~G~v~~Lv~lL-----------~~-----------~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i  569 (643)
                      ....+. .+.   ...++.++..+           .+           .+..+...|..+|..|+....  ..+. ...+
T Consensus       286 ~~~~~~-~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~--~~~~-~~l~  361 (852)
T 4fdd_A          286 QPICKD-VLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR--DELL-PHIL  361 (852)
T ss_dssp             STTHHH-HHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG--GGGH-HHHH
T ss_pred             chhHHH-HHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc--HHHH-HHHH
Confidence            654333 222   24566676666           22           122356778888888886532  1222 2467


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494          570 ETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK  638 (643)
Q Consensus       570 ~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~  638 (643)
                      +.+..++.+.+...|+.|+.+|..++.+.+..... .-.++++.|+.++.+.++++|..|...|..+..
T Consensus       362 ~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~-~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~  429 (852)
T 4fdd_A          362 PLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIP-YLPELIPHLIQCLSDKKALVRSITCWTLSRYAH  429 (852)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            77788888888999999999999999987653332 224678999999999999999999999988875

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=98.91  E-value=3.2e-10  Score=88.06  Aligned_cols=55  Identities=20%  Similarity=0.476  Sum_probs=49.0

Q ss_pred             CcccCccCcccccCC-------eecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCchh
Q 006494          271 HEFLCPVTLEIMTDP-------VIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNY  326 (643)
Q Consensus       271 ~~f~Cpi~~~~m~dP-------v~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~  326 (643)
                      +++.||||++.+.+|       ++++|||+|++.||.+|+.. +.+||.|+.++...++.|++
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~   63 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIY   63 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTCEEECC
T ss_pred             CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCccceeeee
Confidence            468899999999998       88999999999999999997 67999999999887776653

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.86  E-value=1.1e-09  Score=86.49  Aligned_cols=52  Identities=17%  Similarity=0.446  Sum_probs=46.5

Q ss_pred             CCCCCcccCccCcccccCC-------eecCCcccccHHhHHHHHhcCCCCCCCCCcccCC
Q 006494          267 MLVPHEFLCPVTLEIMTDP-------VIVATGQTYERESIQRWLNSNHKTCPKTGQILDH  319 (643)
Q Consensus       267 ~~~p~~f~Cpi~~~~m~dP-------v~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~  319 (643)
                      ..+++++.||||++.+.+|       ++++|||+||+.||.+|+.. +.+||.|+.++..
T Consensus        10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~   68 (69)
T 2ea6_A           10 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH   68 (69)
T ss_dssp             CCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred             cCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence            3467889999999999998       88999999999999999987 6799999988753

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=98.84  E-value=2.7e-09  Score=86.19  Aligned_cols=55  Identities=16%  Similarity=0.217  Sum_probs=47.3

Q ss_pred             CCCCcccCccCcccc--cCCeecC--CcccccHHhHHHHHhcCCCCCCCCCcccCCCCC
Q 006494          268 LVPHEFLCPVTLEIM--TDPVIVA--TGQTYERESIQRWLNSNHKTCPKTGQILDHLSL  322 (643)
Q Consensus       268 ~~p~~f~Cpi~~~~m--~dPv~~~--~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l  322 (643)
                      .+.+++.||||++.+  .||++.+  |||+||+.||.+|+..+...||.||+++....+
T Consensus         7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~   65 (78)
T 1e4u_A            7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA   65 (78)
T ss_dssp             CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred             ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence            457889999999999  4677776  999999999999998777889999999876543

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.82  E-value=2.4e-09  Score=86.73  Aligned_cols=57  Identities=25%  Similarity=0.397  Sum_probs=48.9

Q ss_pred             CCCCcccCccCcccccCCe---ecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCch
Q 006494          268 LVPHEFLCPVTLEIMTDPV---IVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPN  325 (643)
Q Consensus       268 ~~p~~f~Cpi~~~~m~dPv---~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn  325 (643)
                      ...+++.||||++.|.+|.   +++|||+|++.||.+|+.. +.+||.|+.++....+.+|
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~   70 (78)
T 2ect_A           11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTGQNTATN   70 (78)
T ss_dssp             TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCCCSCSCCC
T ss_pred             cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccCCcccCCC
Confidence            3567899999999999874   4699999999999999986 4799999999988777665

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=98.80  E-value=8.1e-08  Score=107.30  Aligned_cols=264  Identities=14%  Similarity=0.089  Sum_probs=180.2

Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHH
Q 006494          361 EEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHI  440 (643)
Q Consensus       361 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i  440 (643)
                      ..++.+...+.+.++.+|..|+..|..++......   ......++.+..+++++++.++..|+.+|..++..-...  .
T Consensus       164 ~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~  238 (588)
T 1b3u_A          164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD---NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE--D  238 (588)
T ss_dssp             HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH---HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH--H
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH---hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH--H
Confidence            45666667778889999999999999988543321   123457888999999999999999999998876421111  1


Q ss_pred             HhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCc--
Q 006494          441 AREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSN--  518 (643)
Q Consensus       441 ~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en--  518 (643)
                      .....++.+..++.+.++.+|..++.+|..++..-..  .......++.++.++++.++.++..|+.+|..++..-..  
T Consensus       239 ~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~  316 (588)
T 1b3u_A          239 LEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADC  316 (588)
T ss_dssp             HHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTT
T ss_pred             HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhh
Confidence            2234778888888888999999999999988742211  112245689999999998999999999999999864322  


Q ss_pred             hHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCC
Q 006494          519 KSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNN  598 (643)
Q Consensus       519 ~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~  598 (643)
                      +....-..++|.+..++.+.+..+...++.+|..++..-.. ... ....+|.+..++.+.++.+|..|+.+|..++..-
T Consensus       317 ~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~-~~~-~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~  394 (588)
T 1b3u_A          317 RENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK-DNT-IEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVI  394 (588)
T ss_dssp             HHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH-HHH-HHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHS
T ss_pred             hhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH-hHH-HHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhc
Confidence            22223356788888888888888888888888887754211 111 2346777888888777888888887777666432


Q ss_pred             HHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 006494          599 SYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHM  636 (643)
Q Consensus       599 ~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l  636 (643)
                      +...   ....++|.|..++.+.+.+.+..+...|..+
T Consensus       395 ~~~~---~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l  429 (588)
T 1b3u_A          395 GIRQ---LSQSLLPAIVELAEDAKWRVRLAIIEYMPLL  429 (588)
T ss_dssp             CHHH---HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             CHHH---HHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence            1110   1123455555555555555555555555444

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=98.80  E-value=4.4e-08  Score=109.43  Aligned_cols=265  Identities=14%  Similarity=0.018  Sum_probs=194.5

Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHH
Q 006494          360 IEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRH  439 (643)
Q Consensus       360 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~  439 (643)
                      ...++.+...+.+.++.+|..++..|..++..-..  .. .....++.+..++++.+++++..++.+|..+...-.. ..
T Consensus       323 ~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~--~~-~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~-~~  398 (588)
T 1b3u_A          323 SQILPCIKELVSDANQHVKSALASVIMGLSPILGK--DN-TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI-RQ  398 (588)
T ss_dssp             HTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH--HH-HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH-HH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH--hH-HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCH-HH
Confidence            34667777888889999999999988888743211  11 1234778899999998999999998887766532111 11


Q ss_pred             HHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCch
Q 006494          440 IAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNK  519 (643)
Q Consensus       440 i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~  519 (643)
                       .....++.+..++++.++.+|..++.++..++..-..  .......++.+..++.+.+..++..|+.+|..++..-+..
T Consensus       399 -~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~  475 (588)
T 1b3u_A          399 -LSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGV--EFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE  475 (588)
T ss_dssp             -HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCG--GGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH
T ss_pred             -HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch
Confidence             1234678888888888999999999999888632111  1122346788889998888999999999999988643322


Q ss_pred             HHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCH
Q 006494          520 SRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNS  599 (643)
Q Consensus       520 ~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~  599 (643)
                        .....++|.|..++.+.+..+...++.++..++..-.. .. .....++.|+.++.+.++.+|..++.+|..++..-+
T Consensus       476 --~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~-~~-~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~  551 (588)
T 1b3u_A          476 --WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQ-DI-TTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILD  551 (588)
T ss_dssp             --HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHH-HH-HHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSC
T ss_pred             --hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCH-HH-HHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhc
Confidence              22346788888888777888899999999998875221 12 224678999999998999999999999999997533


Q ss_pred             HHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494          600 YFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK  638 (643)
Q Consensus       600 ~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~  638 (643)
                      ..   .....++|.|..+..+.+..+|..|...|..+.+
T Consensus       552 ~~---~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~~  587 (588)
T 1b3u_A          552 NS---TLQSEVKPILEKLTQDQDVDVKYFAQEALTVLSL  587 (588)
T ss_dssp             HH---HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTTC
T ss_pred             hh---hhHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhc
Confidence            22   1224578888888888899999999999987753

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.79  E-value=3.3e-08  Score=113.38  Aligned_cols=193  Identities=16%  Similarity=0.123  Sum_probs=153.5

Q ss_pred             CChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHH-HHcccCChhhHHHHHHHHHHhhcC--CCchH
Q 006494          444 GAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLV-NLLRYGSIRGKKDAATALFNLSIN--QSNKS  520 (643)
Q Consensus       444 g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv-~lL~s~~~~~k~~A~~aL~nLs~~--~en~~  520 (643)
                      ..+.++++.|++++++.|..|+++|.+|+.+...+..+...|+|..++ .+|.+.+..++..|+.+|.||+..  .+.+.
T Consensus        34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~  113 (684)
T 4gmo_A           34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV  113 (684)
T ss_dssp             HTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             hhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence            356778888999999999999999999998878888888888887765 567888999999999999999974  45688


Q ss_pred             HHHhcCcHHHHHHHhccCC---------------------hhhHHHHHHHHHHHhCC-hhhHHHHHhcCcHHHHHHHHhc
Q 006494          521 RAIKAGIIPSLLKLLEDKA---------------------LGMVDEALSILQLLASH-PEGRNEIGRLSFIETLVEIIKN  578 (643)
Q Consensus       521 ~iv~~G~v~~Lv~lL~~~~---------------------~~~~~~Al~iL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~  578 (643)
                      .+++.|++++|..+|....                     ..+.+.++.+|++||.. .+....+...+.++.|+.+|.+
T Consensus       114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~  193 (684)
T 4gmo_A          114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLIS  193 (684)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHh
Confidence            9999999999999985410                     12445688899999975 5667788888999999998854


Q ss_pred             ---CChHHHHHHHHHHHHhccCCHHHHHHHHHcCc---HHHHHHHHhhCCHHHHHHHHHHHHHhh
Q 006494          579 ---GTPKNKECATSVLLELGLNNSYFILAALQYGV---YEHLVEITRCGTNRGQRKANSLLQHMS  637 (643)
Q Consensus       579 ---~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~---i~~L~~ll~~g~~~~k~~A~~lL~~l~  637 (643)
                         .....+..|+.+|..++..+......+.+.|.   +..|..+ ..+++..+..+..+|+++.
T Consensus       194 ~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~-~~~~~~~~~la~giL~Ni~  257 (684)
T 4gmo_A          194 ADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKL-ATGTDPRAVMACGVLHNVF  257 (684)
T ss_dssp             HCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHH-HHSSCTTHHHHHHHHHHHH
T ss_pred             cCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHH-hcCCcHHHHHHHHHHHhHh
Confidence               24678999999999999999988888877664   3333333 3445555777888888874

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.74  E-value=3.3e-08  Score=113.36  Aligned_cols=192  Identities=18%  Similarity=0.159  Sum_probs=148.8

Q ss_pred             CChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHH-HHccCCHHHHHHHHHHHHHcccc--ccccc
Q 006494          403 GGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIE-ILQNGTNEARENSAAALFSLSML--DENRV  479 (643)
Q Consensus       403 g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~-lL~~~~~~~~~~Aa~~L~~Ls~~--~~~k~  479 (643)
                      ..|.+++..|++++++.|..|+.+|.||+.++..+..+...|++..++. +|.+.+.++|..|+++|.||+..  .+.+.
T Consensus        34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~  113 (684)
T 4gmo_A           34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV  113 (684)
T ss_dssp             HTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             hhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence            3566788889999999999999999999999999999998898887654 67778999999999999999865  45678


Q ss_pred             hhhccCChHHHHHHcccCC---------------------hhhHHHHHHHHHHhhcC-CCchHHHHhcCcHHHHHHHhcc
Q 006494          480 MVGNLNGIPPLVNLLRYGS---------------------IRGKKDAATALFNLSIN-QSNKSRAIKAGIIPSLLKLLED  537 (643)
Q Consensus       480 ~i~~~g~i~~Lv~lL~s~~---------------------~~~k~~A~~aL~nLs~~-~en~~~iv~~G~v~~Lv~lL~~  537 (643)
                      .+...|++++|..++++..                     .....+++.+|.+||.. .+....+...|+++.|+.+|.+
T Consensus       114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~  193 (684)
T 4gmo_A          114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLIS  193 (684)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHh
Confidence            8889999999999985321                     12234677888999864 4446677789999999999855


Q ss_pred             ---CChhhHHHHHHHHHHHhCC-hhhHHHHHhcCcH---HHHHHHHhcCChHHHHHHHHHHHHhc
Q 006494          538 ---KALGMVDEALSILQLLASH-PEGRNEIGRLSFI---ETLVEIIKNGTPKNKECATSVLLELG  595 (643)
Q Consensus       538 ---~~~~~~~~Al~iL~nLa~~-~~~~~~i~~~g~i---~~Lv~lL~~~s~~~ke~A~~~L~~L~  595 (643)
                         ....+...|+.+|.+|+.. ++....+.+.+..   ..+..+.+ .+...+..++.+|.++.
T Consensus       194 ~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~-~~~~~~~la~giL~Ni~  257 (684)
T 4gmo_A          194 ADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLAT-GTDPRAVMACGVLHNVF  257 (684)
T ss_dssp             HCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHH-SSCTTHHHHHHHHHHHH
T ss_pred             cCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhc-CCcHHHHHHHHHHHhHh
Confidence               2457899999999999997 5666677665542   33333333 44445677889998874

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=98.72  E-value=6.3e-08  Score=104.70  Aligned_cols=273  Identities=15%  Similarity=0.098  Sum_probs=186.9

Q ss_pred             HHHHHHHHhhcCC--CHHHHHHHHHHHHHhhhhC-hhhHHHHHhhCChHHHHHHhcCC--CHHHHHHHHHHHHhcccC-h
Q 006494          361 EEICSLIQNLSSS--QLNIKRDSVMKIRMLSKEN-PDNRILIANNGGIRPLVQLLSYP--DSKIQEHTVTALLNLSLD-E  434 (643)
Q Consensus       361 ~~i~~Lv~~L~s~--~~~~~~~Al~~L~~La~~~-~~~r~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~nLs~~-~  434 (643)
                      +.++.|++.+.++  ++..+..|+..+..+++.. +..-.... ...++.++..|.+.  +..++..|+.++.++... .
T Consensus       128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~  206 (462)
T 1ibr_B          128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK  206 (462)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTH
T ss_pred             HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            4788999999888  8999999999999988643 21100011 23667888899887  789999999999886532 1


Q ss_pred             hhH-HHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccc--cchhhccCChHHHHHHcccCChhhHHHHHHHHHH
Q 006494          435 TNK-RHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDEN--RVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFN  511 (643)
Q Consensus       435 ~~k-~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~--k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~n  511 (643)
                      .+- ......-.++.+...+.+.+.+++..++.+|..+......  ...+. .+.++.++..+++.++.++..|+..+.+
T Consensus       207 ~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~v~~~a~~~l~~  285 (462)
T 1ibr_B          207 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMG-PALFAITIEAMKSDIDEVALQGIEFWSN  285 (462)
T ss_dssp             HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTT-TTHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred             HhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            110 0111111355666666777899999999999988743321  11111 1567777888888888999999999888


Q ss_pred             hhcCCC------------------chHHHHh---cCcHHHHHHHhccC-------ChhhHHHHHHHHHHHhCChhhHHHH
Q 006494          512 LSINQS------------------NKSRAIK---AGIIPSLLKLLEDK-------ALGMVDEALSILQLLASHPEGRNEI  563 (643)
Q Consensus       512 Ls~~~e------------------n~~~iv~---~G~v~~Lv~lL~~~-------~~~~~~~Al~iL~nLa~~~~~~~~i  563 (643)
                      ++....                  ....+++   ..++|.+++.+.+.       +..+...|..+|..|+..-.  ..+
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~--~~~  363 (462)
T 1ibr_B          286 VCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DDI  363 (462)
T ss_dssp             HHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT--TTH
T ss_pred             HHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc--HHH
Confidence            875420                  1111111   34667777777532       23567888889988887532  122


Q ss_pred             HhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCH-HHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhhc
Q 006494          564 GRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNS-YFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSKR  639 (643)
Q Consensus       564 ~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~-~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~~  639 (643)
                      . ..+++.+...+.+.+...|+.|+.+|..++.+.. ...... -..++|.|+..+.+.++++|..|...|..+...
T Consensus       364 ~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~-l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~  438 (462)
T 1ibr_B          364 V-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL  438 (462)
T ss_dssp             H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT-TTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence            2 2466777778888889999999999999997543 211111 156899999999999999999999999988764

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=98.70  E-value=9.1e-09  Score=80.88  Aligned_cols=48  Identities=21%  Similarity=0.409  Sum_probs=42.9

Q ss_pred             CcccCccCcccccCC-eecCCcccccHHhHHHHHhcCCCCCCCCCcccCC
Q 006494          271 HEFLCPVTLEIMTDP-VIVATGQTYERESIQRWLNSNHKTCPKTGQILDH  319 (643)
Q Consensus       271 ~~f~Cpi~~~~m~dP-v~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~  319 (643)
                      ++..||||++.+.+| ++++|||+||+.||.+|+.. +.+||.|+.++..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~   52 (68)
T 1chc_A            4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVES   52 (68)
T ss_dssp             CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCC
T ss_pred             CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhHh
Confidence            567899999999997 67899999999999999986 4799999998763

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=98.68  E-value=9.5e-09  Score=77.06  Aligned_cols=47  Identities=19%  Similarity=0.350  Sum_probs=42.1

Q ss_pred             CcccCccCcccccC----CeecCCcccccHHhHHHHHhcCCCCCCCCCcccC
Q 006494          271 HEFLCPVTLEIMTD----PVIVATGQTYERESIQRWLNSNHKTCPKTGQILD  318 (643)
Q Consensus       271 ~~f~Cpi~~~~m~d----Pv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~  318 (643)
                      +++.||||++.+.+    |++++|||.|++.||.+|+..+ .+||.|+.++.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred             CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence            56789999999977    8889999999999999999985 89999998764

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.67  E-value=4.8e-09  Score=83.05  Aligned_cols=52  Identities=17%  Similarity=0.467  Sum_probs=46.5

Q ss_pred             CCCCcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCC
Q 006494          268 LVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLS  321 (643)
Q Consensus       268 ~~p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~  321 (643)
                      .+.+++.||||++.+.+ ++++|||+||+.||.+|+.. +.+||.|+.++...+
T Consensus        11 ~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~   62 (70)
T 2ecn_A           11 QLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDR-HRNCPICRLQMTGAN   62 (70)
T ss_dssp             CCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCC-CSSCHHHHHCTTCCC
T ss_pred             cCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHC-cCcCCCcCCcccCCC
Confidence            45678999999999999 99999999999999999984 689999999887544

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.67  E-value=2e-08  Score=80.36  Aligned_cols=52  Identities=23%  Similarity=0.420  Sum_probs=45.5

Q ss_pred             CCCCcccCccCcccccCCeec---CCcccccHHhHHHHHhcCCCCCCCCCcccCCC
Q 006494          268 LVPHEFLCPVTLEIMTDPVIV---ATGQTYERESIQRWLNSNHKTCPKTGQILDHL  320 (643)
Q Consensus       268 ~~p~~f~Cpi~~~~m~dPv~~---~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~  320 (643)
                      ...+++.||||++.+.+|..+   +|||.|++.||.+|+.. +.+||.|+.++...
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~~   65 (74)
T 2ep4_A           11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQL   65 (74)
T ss_dssp             CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSSC
T ss_pred             cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCcccccc
Confidence            456788999999999988765   99999999999999997 46999999988653

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.66  E-value=6e-09  Score=93.45  Aligned_cols=55  Identities=18%  Similarity=0.439  Sum_probs=49.0

Q ss_pred             CCcccCccCcccccCC-------eecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCch
Q 006494          270 PHEFLCPVTLEIMTDP-------VIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPN  325 (643)
Q Consensus       270 p~~f~Cpi~~~~m~dP-------v~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn  325 (643)
                      ++++.||||++.+.+|       |+++|||+||+.||.+|+.. +.+||.|++++....+.++
T Consensus         5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~l   66 (133)
T 4ap4_A            5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI   66 (133)
T ss_dssp             CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCTTTCEEEC
T ss_pred             CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCcccccccc
Confidence            5789999999999999       99999999999999999987 4699999999987666553

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=98.66  E-value=4.9e-07  Score=101.89  Aligned_cols=264  Identities=13%  Similarity=0.108  Sum_probs=179.0

Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHH
Q 006494          360 IEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRH  439 (643)
Q Consensus       360 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~  439 (643)
                      ...++.+.+.|.+.++.+|..|+..+..+.+.+++.   +.+.+.++.|..+|.++++.++.+|+.+|..++.+......
T Consensus       120 ~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~  196 (591)
T 2vgl_B          120 EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNL  196 (591)
T ss_dssp             HHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCS
T ss_pred             HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccc
Confidence            456777889999999999999999999998766552   23356789999999999999999999999998865421100


Q ss_pred             H-HhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhc----
Q 006494          440 I-AREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSI----  514 (643)
Q Consensus       440 i-~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~----  514 (643)
                      + ...+.+..|+..+...++..+.....++..+...++.    .....++.+..++++.+..++..|+.++.++..    
T Consensus       197 ~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~----~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~  272 (591)
T 2vgl_B          197 LDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDR----EAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPK  272 (591)
T ss_dssp             CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHH----HHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCB
T ss_pred             hhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChH----HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCC
Confidence            0 1123466677777777777777777777766532221    013466778888888888899999999999874    


Q ss_pred             CCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC-hh------------------h-HHHH------Hhc--
Q 006494          515 NQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH-PE------------------G-RNEI------GRL--  566 (643)
Q Consensus       515 ~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~-~~------------------~-~~~i------~~~--  566 (643)
                      +++.... +-..+.++|+.++. .++.++-.|+..|..++.. ++                  . +.++      +..  
T Consensus       273 ~~~~~~~-~~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~n  350 (591)
T 2vgl_B          273 DSDYYNM-LLKKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQAN  350 (591)
T ss_dssp             TTBSHHH-HHHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSST
T ss_pred             CHHHHHH-HHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhh
Confidence            2232222 22345667776554 5667777777777777641 11                  0 1111      112  


Q ss_pred             --CcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhh
Q 006494          567 --SFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMS  637 (643)
Q Consensus       567 --g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~  637 (643)
                        ..++.|.+++.+.+...+..++..+..+|...+...     ..+++.|+.++....+.++..+...++.+-
T Consensus       351 v~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~-----~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii  418 (591)
T 2vgl_B          351 IAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSA-----ERCVSTLLDLIQTKVNYVVQEAIVVIRDIF  418 (591)
T ss_dssp             HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHH-----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHH-----HHHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence              234556666667788999999999999998765432     246778888888777777766666665553

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=98.63  E-value=1.5e-08  Score=75.98  Aligned_cols=49  Identities=27%  Similarity=0.554  Sum_probs=42.9

Q ss_pred             CCCcccCccCcccccC---CeecC-CcccccHHhHHHHHhcCCCCCCCCCcccC
Q 006494          269 VPHEFLCPVTLEIMTD---PVIVA-TGQTYERESIQRWLNSNHKTCPKTGQILD  318 (643)
Q Consensus       269 ~p~~f~Cpi~~~~m~d---Pv~~~-~g~t~~r~~I~~w~~~~~~~cP~~~~~l~  318 (643)
                      +.++..||||++.+.+   |+.++ |||.|++.||.+|+.. +.+||.|+.++.
T Consensus         2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~   54 (55)
T 1iym_A            2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV   54 (55)
T ss_dssp             CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred             CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEeE
Confidence            3467889999999998   78887 9999999999999987 679999998763

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=98.63  E-value=2.7e-08  Score=78.40  Aligned_cols=51  Identities=20%  Similarity=0.397  Sum_probs=43.6

Q ss_pred             CCCCcccCccCccccc---CCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCC
Q 006494          268 LVPHEFLCPVTLEIMT---DPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDH  319 (643)
Q Consensus       268 ~~p~~f~Cpi~~~~m~---dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~  319 (643)
                      ...++..||||++.+.   +|++++|||+|++.||.+|+.. +.+||.|+.++..
T Consensus        10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~   63 (69)
T 2kiz_A           10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEA   63 (69)
T ss_dssp             STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCS
T ss_pred             cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccC
Confidence            3457789999999884   5678999999999999999997 4689999998865

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.62  E-value=7.5e-09  Score=78.03  Aligned_cols=46  Identities=11%  Similarity=0.056  Sum_probs=41.1

Q ss_pred             CCcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCC
Q 006494          270 PHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDH  319 (643)
Q Consensus       270 p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~  319 (643)
                      .+++.||||++.+.+|++++|||+||+.||.+|    ...||.|++++..
T Consensus         4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~   49 (56)
T 1bor_A            4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPL   49 (56)
T ss_dssp             CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSC
T ss_pred             ccCCCceEeCCccCCeEEcCCCCcccHHHHccC----CCCCCcCCcEeec
Confidence            467899999999999999999999999999883    5789999988764

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=98.62  E-value=5.6e-07  Score=101.44  Aligned_cols=258  Identities=16%  Similarity=0.116  Sum_probs=186.7

Q ss_pred             HHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHH
Q 006494          362 EICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIA  441 (643)
Q Consensus       362 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~  441 (643)
                      ....+++.+.+.+...+.-+.-.+..+++.+++..     .-++..+.+-|.++++.++..|+.+|.++. .++....  
T Consensus        50 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~-----~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~-~~~~~~~--  121 (591)
T 2vgl_B           50 LFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMA-----IMAVNSFVKDCEDPNPLIRALAVRTMGCIR-VDKITEY--  121 (591)
T ss_dssp             GHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHH-----HTTHHHHGGGSSSSSHHHHHHHHHHHHTCC-SGGGHHH--
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHH-----HHHHHHHHHHcCCCCHHHHHHHHHHHHcCC-hHHHHHH--
Confidence            46677888889898888887777888776554432     235677888899999999999999999986 3332222  


Q ss_pred             hcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCch-H
Q 006494          442 REGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNK-S  520 (643)
Q Consensus       442 ~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~-~  520 (643)
                         .++.+...|.+.++.+|..|+.++..+....  ...+...+.++.|..+|.+.++.++..|+.+|..++...+.. .
T Consensus       122 ---l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~--p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~  196 (591)
T 2vgl_B          122 ---LCEPLRKCLKDEDPYVRKTAAVCVAKLHDIN--AQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNL  196 (591)
T ss_dssp             ---HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSS--CCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCS
T ss_pred             ---HHHHHHHHcCCCChHHHHHHHHHHHHHHhhC--hhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccc
Confidence               3567889999999999999999999987532  223333578899999999999999999999999999754322 1


Q ss_pred             HHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccC---
Q 006494          521 RAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLN---  597 (643)
Q Consensus       521 ~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~---  597 (643)
                      .-...+.+..|+..+.+.++-.+-..+.+|..++..++..    ....++.+..++++.++.++..|+.++..+...   
T Consensus       197 ~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~----~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~  272 (591)
T 2vgl_B          197 LDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE----AQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPK  272 (591)
T ss_dssp             CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH----HHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCB
T ss_pred             hhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCC
Confidence            1112345777888887777777777788887777543211    124577777778888899999999999998742   


Q ss_pred             CHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494          598 NSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK  638 (643)
Q Consensus       598 ~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~  638 (643)
                      +++....+. ..+.+.|+.++ ++++.+|..|...|..+..
T Consensus       273 ~~~~~~~~~-~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~  311 (591)
T 2vgl_B          273 DSDYYNMLL-KKLAPPLVTLL-SGEPEVQYVALRNINLIVQ  311 (591)
T ss_dssp             TTBSHHHHH-HHTHHHHHHHT-TSCHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHH-HHHHHHHHHHh-cCCccHHHHHHHHHHHHHH
Confidence            333333222 34567777665 4778888888888887764

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=98.61  E-value=2.3e-08  Score=83.46  Aligned_cols=50  Identities=18%  Similarity=0.447  Sum_probs=44.4

Q ss_pred             CCCcccCccCcccccC---CeecCCcccccHHhHHHHHhcCCCCCCCCCcccCC
Q 006494          269 VPHEFLCPVTLEIMTD---PVIVATGQTYERESIQRWLNSNHKTCPKTGQILDH  319 (643)
Q Consensus       269 ~p~~f~Cpi~~~~m~d---Pv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~  319 (643)
                      ..++..||||++.+.+   ++.++|||.|++.||.+|+.. +.+||.|+.++..
T Consensus        37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~   89 (91)
T 2l0b_A           37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFPP   89 (91)
T ss_dssp             SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-TCBCTTTCCBSSC
T ss_pred             cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-CCcCcCcCccCCC
Confidence            4577899999999988   888999999999999999986 5799999988764

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.57  E-value=3.1e-08  Score=79.47  Aligned_cols=50  Identities=16%  Similarity=0.431  Sum_probs=44.0

Q ss_pred             CCCcccCccCcccccCC---eecCCcccccHHhHHHHHhcCCCCCCCCCcccCC
Q 006494          269 VPHEFLCPVTLEIMTDP---VIVATGQTYERESIQRWLNSNHKTCPKTGQILDH  319 (643)
Q Consensus       269 ~p~~f~Cpi~~~~m~dP---v~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~  319 (643)
                      ..++..||||++.+.+|   +.++|||.|++.||.+|+.. +.+||.|+.++..
T Consensus        20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~   72 (75)
T 1x4j_A           20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGP   72 (75)
T ss_dssp             SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCC
T ss_pred             cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCC
Confidence            34678899999999988   77899999999999999987 5799999988764

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=98.56  E-value=4.6e-08  Score=85.34  Aligned_cols=50  Identities=12%  Similarity=0.229  Sum_probs=42.9

Q ss_pred             CCcccCccCcccccCCe------------------ecCCcccccHHhHHHHHhc----CCCCCCCCCcccCC
Q 006494          270 PHEFLCPVTLEIMTDPV------------------IVATGQTYERESIQRWLNS----NHKTCPKTGQILDH  319 (643)
Q Consensus       270 p~~f~Cpi~~~~m~dPv------------------~~~~g~t~~r~~I~~w~~~----~~~~cP~~~~~l~~  319 (643)
                      +.+..||||++.|.+|+                  +++|||.|++.||.+|+..    .+.+||.|+..+..
T Consensus        23 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~   94 (114)
T 1v87_A           23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred             CCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence            45679999999999886                  7899999999999999963    35689999998764

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.47  E-value=7.4e-08  Score=100.49  Aligned_cols=50  Identities=20%  Similarity=0.281  Sum_probs=45.3

Q ss_pred             CcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCCC
Q 006494          271 HEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHL  320 (643)
Q Consensus       271 ~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~  320 (643)
                      ....||||++.+.+||+++|||+||..||..|+..+..+||.|+.++...
T Consensus       331 ~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~  380 (389)
T 2y1n_A          331 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT  380 (389)
T ss_dssp             SSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred             CCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence            34799999999999999999999999999999996678999999988753

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=98.46  E-value=3.2e-08  Score=79.20  Aligned_cols=45  Identities=18%  Similarity=0.345  Sum_probs=41.1

Q ss_pred             CCcccCccCcccccCCeecCCccc-ccHHhHHHHHhcCCCCCCCCCcccCC
Q 006494          270 PHEFLCPVTLEIMTDPVIVATGQT-YERESIQRWLNSNHKTCPKTGQILDH  319 (643)
Q Consensus       270 p~~f~Cpi~~~~m~dPv~~~~g~t-~~r~~I~~w~~~~~~~cP~~~~~l~~  319 (643)
                      .+++.||||++.+.+||+++|||+ ||+.|+.+|     ..||.|+.++..
T Consensus        22 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~   67 (74)
T 4ic3_A           22 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF   67 (74)
T ss_dssp             HHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred             ccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence            367899999999999999999999 999999999     789999998763

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.46  E-value=4.1e-06  Score=80.30  Aligned_cols=244  Identities=17%  Similarity=0.209  Sum_probs=171.0

Q ss_pred             hhhhHHHHHHHHhhccccCCCCCCCCCCCCCcHHhHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhh-HHHHHhhC
Q 006494          325 NYALRNLIVQWCEKNNVELPKKDTNTGSDASSAALIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDN-RILIANNG  403 (643)
Q Consensus       325 n~~lr~lI~~w~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~-r~~i~~~g  403 (643)
                      -..++..+..|.-..-++.            ...+++.+..|+..|...|+.++.+++..|..+.+.-+.. +..+.+ .
T Consensus         9 ~~~lre~L~sWkiK~a~el------------a~~~e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e-~   75 (265)
T 3b2a_A            9 KTELRELVLSWQILDAVSL------------ALEDKRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLE-R   75 (265)
T ss_dssp             HHHHHHHHHTTCHHHHHHH------------HHHCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH-H
T ss_pred             HHHHHHHHHHhhHHHHHHH------------HHhchhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHH-H
Confidence            3566777777754322210            1123568889999999999999999999999998874333 333333 4


Q ss_pred             ChHHHHHHhcCCCHHHHHHHHHHHHhcccCh-hhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhh
Q 006494          404 GIRPLVQLLSYPDSKIQEHTVTALLNLSLDE-TNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVG  482 (643)
Q Consensus       404 ~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~-~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~  482 (643)
                      .++.+++++++.|..+..+|+.+|..|-.+. -....+..  .+..+..+++++++-.+..|+-.+..|...+..     
T Consensus        76 ~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~-----  148 (265)
T 3b2a_A           76 HLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS-----  148 (265)
T ss_dssp             HHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCC-----
T ss_pred             HHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccch-----
Confidence            7899999999999999999999998876442 22333332  356788888999999999999999999433333     


Q ss_pred             ccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHH
Q 006494          483 NLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNE  562 (643)
Q Consensus       483 ~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~  562 (643)
                       .+.+..+..++.+.+.++|..|+.++.|++...++...+  .+++.-+-.+|.+.++.+++.|+.+|..+.+.+-..+.
T Consensus       149 -~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~--~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~  225 (265)
T 3b2a_A          149 -KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHL--TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENV  225 (265)
T ss_dssp             -HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCG--GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCC
T ss_pred             -HHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhH
Confidence             356788999998889999999999999999855443322  23455577788888999999999999999987532111


Q ss_pred             HHhcCcHHHHHHHH--hcCChHHHHHHHHHH
Q 006494          563 IGRLSFIETLVEII--KNGTPKNKECATSVL  591 (643)
Q Consensus       563 i~~~g~i~~Lv~lL--~~~s~~~ke~A~~~L  591 (643)
                      +-+.-.+...+.=|  ..|.|..+..|-.+-
T Consensus       226 ~~~~~~~~~~v~~l~~~~~~~~~~~ka~~v~  256 (265)
T 3b2a_A          226 KIELLKISRIVDGLVYREGAPIIRLKAKKVS  256 (265)
T ss_dssp             HHHHHHHHHHHHHGGGCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCChhHHHHHHHHH
Confidence            11111222223222  347777777775543

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=98.37  E-value=1.2e-05  Score=94.18  Aligned_cols=273  Identities=15%  Similarity=0.083  Sum_probs=184.9

Q ss_pred             HHHHHHHHhhcCC--CHHHHHHHHHHHHHhhhhChhhHHHHHh--hCChHHHHHHhcCC--CHHHHHHHHHHHHhcccC-
Q 006494          361 EEICSLIQNLSSS--QLNIKRDSVMKIRMLSKENPDNRILIAN--NGGIRPLVQLLSYP--DSKIQEHTVTALLNLSLD-  433 (643)
Q Consensus       361 ~~i~~Lv~~L~s~--~~~~~~~Al~~L~~La~~~~~~r~~i~~--~g~i~~Lv~lL~~~--~~~~~~~a~~~L~nLs~~-  433 (643)
                      ..++.+++.+.+.  ++.++..++..+..++.....  ..+..  ...++.+...+.++  +..++..|+.+|.++... 
T Consensus       128 ~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~--~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~  205 (876)
T 1qgr_A          128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP--EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT  205 (876)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCH--HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGC
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCH--hhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            3688899999888  899999999999988864211  11211  24567788888876  688999999999887632 


Q ss_pred             hhh-HHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHcccccccc-chhhccCChHHHHHHcccCChhhHHHHHHHHHH
Q 006494          434 ETN-KRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENR-VMVGNLNGIPPLVNLLRYGSIRGKKDAATALFN  511 (643)
Q Consensus       434 ~~~-k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k-~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~n  511 (643)
                      ..+ .........++.+...+.+.+.++|..++.+|..+....... ........++.++..+.+.++.++..|+..+.+
T Consensus       206 ~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~  285 (876)
T 1qgr_A          206 KANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSN  285 (876)
T ss_dssp             HHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence            111 001111124666777777778899999999999887432211 111112567778887777788899999998888


Q ss_pred             hhcCCC-------------------chHHH--HhcCcHHHHHHHhcc-------CChhhHHHHHHHHHHHhCChhhHHHH
Q 006494          512 LSINQS-------------------NKSRA--IKAGIIPSLLKLLED-------KALGMVDEALSILQLLASHPEGRNEI  563 (643)
Q Consensus       512 Ls~~~e-------------------n~~~i--v~~G~v~~Lv~lL~~-------~~~~~~~~Al~iL~nLa~~~~~~~~i  563 (643)
                      ++....                   ....+  .-...++.+++.+..       .+..+...|..+|..++..-.  ..+
T Consensus       286 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~--~~~  363 (876)
T 1qgr_A          286 VCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DDI  363 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG--GGG
T ss_pred             HHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc--Hhh
Confidence            875310                   00010  113457778888753       234577788888888876522  112


Q ss_pred             HhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCH-HHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhhc
Q 006494          564 GRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNS-YFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSKR  639 (643)
Q Consensus       564 ~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~-~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~~  639 (643)
                      . ..+++.+...+.+.+...|+.|+.+|..++.+.. +...... ..+++.|+..+.+.++.+|..|..+|..+.+.
T Consensus       364 ~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~  438 (876)
T 1qgr_A          364 V-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL  438 (876)
T ss_dssp             H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence            2 2456666777777889999999999999998654 3322222 45899999999999999999999999988764

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.37  E-value=7.5e-08  Score=86.17  Aligned_cols=57  Identities=19%  Similarity=0.450  Sum_probs=50.5

Q ss_pred             CCCcccCccCcccccCC-------eecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCchh
Q 006494          269 VPHEFLCPVTLEIMTDP-------VIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNY  326 (643)
Q Consensus       269 ~p~~f~Cpi~~~~m~dP-------v~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~  326 (643)
                      .++.+.||||++.+.+|       +.++|||+|+..||.+|+.. +.+||.|+.++...++.|++
T Consensus        69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~  132 (133)
T 4ap4_A           69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPIY  132 (133)
T ss_dssp             SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCGGGEEEEC
T ss_pred             CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCChhcceeee
Confidence            35788999999999998       88999999999999999997 57999999999887777654

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=98.36  E-value=7e-06  Score=96.02  Aligned_cols=271  Identities=10%  Similarity=0.076  Sum_probs=179.0

Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhCh-hhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhH--
Q 006494          361 EEICSLIQNLSSSQLNIKRDSVMKIRMLSKENP-DNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNK--  437 (643)
Q Consensus       361 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~-~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k--  437 (643)
                      ..++.+.+.+.+.++..+..|+..+..++.... ..-.... ...++.|+..+.++++.++..++.+|..++..-...  
T Consensus       369 ~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~  447 (861)
T 2bpt_A          369 PVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESID  447 (861)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSC
T ss_pred             HHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcC
Confidence            456667777888899999999999999985432 2111111 246888999999999999999999998876321100  


Q ss_pred             -HHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHcccccc--ccchhhc--cCChHHHHHHcccCC--hhhHHHHHHHHH
Q 006494          438 -RHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDE--NRVMVGN--LNGIPPLVNLLRYGS--IRGKKDAATALF  510 (643)
Q Consensus       438 -~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~--~k~~i~~--~g~i~~Lv~lL~s~~--~~~k~~A~~aL~  510 (643)
                       .. .-...++.++..|++. +.++..|+.++.+++..-.  ....+..  ...++.|+.++.+.+  ..++..++.+|.
T Consensus       448 ~~~-~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~  525 (861)
T 2bpt_A          448 PQQ-HLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALT  525 (861)
T ss_dssp             TTT-THHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHH
T ss_pred             CHH-HHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHH
Confidence             00 0123467777777765 8899999999998864311  0122222  345778888887543  678889999999


Q ss_pred             HhhcCCCc-hHHHHhcCcHHHHHHHhccC---------------ChhhHHHHHHHHHHHhCChhhHHHHH--hcCcHHHH
Q 006494          511 NLSINQSN-KSRAIKAGIIPSLLKLLEDK---------------ALGMVDEALSILQLLASHPEGRNEIG--RLSFIETL  572 (643)
Q Consensus       511 nLs~~~en-~~~iv~~G~v~~Lv~lL~~~---------------~~~~~~~Al~iL~nLa~~~~~~~~i~--~~g~i~~L  572 (643)
                      .+....+. ....+. ..++.+++.+.+.               ...++..++.+|.+++..-..  .+.  -...++.+
T Consensus       526 ~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~--~~~~~~~~l~~~l  602 (861)
T 2bpt_A          526 TMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPS--SVEPVADMLMGLF  602 (861)
T ss_dssp             HHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGG--GTGGGHHHHHHHH
T ss_pred             HHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHH
Confidence            99864333 222222 4677777776531               234566788888888764221  111  12467778


Q ss_pred             HHHHhcCCh-HHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494          573 VEIIKNGTP-KNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK  638 (643)
Q Consensus       573 v~lL~~~s~-~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~  638 (643)
                      +.++.+.+. ..++.++.++..++...+....... ..++|.|...+.+.++..+..|..++..+.+
T Consensus       603 ~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~  668 (861)
T 2bpt_A          603 FRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYL-ETFSPYLLKALNQVDSPVSITAVGFIADISN  668 (861)
T ss_dssp             HHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence            888887766 7899998888888764332222111 2478888888877788899999888876654

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=98.34  E-value=1.2e-05  Score=90.91  Aligned_cols=255  Identities=14%  Similarity=0.111  Sum_probs=161.1

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHHh
Q 006494          363 ICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAR  442 (643)
Q Consensus       363 i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~~  442 (643)
                      ....++.+.+.+.+.+.-+.-.+..++..+++....     ++..|.+-|.++++.++..|+.+|.++.. ++    +. 
T Consensus        72 ~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~l-----~in~l~kDL~~~n~~vr~lAL~~L~~i~~-~~----~~-  140 (618)
T 1w63_A           72 QLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLL-----MTNCIKNDLNHSTQFVQGLALCTLGCMGS-SE----MC-  140 (618)
T ss_dssp             HHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHHH-----HHHHHHHHHSCSSSHHHHHHHHHHHHHCC-HH----HH-
T ss_pred             HHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHHH-----HHHHHHHhcCCCCHhHHHHHHHHHHhcCC-HH----HH-
Confidence            445556666777777766666777777655443222     34568888888889999999999998863 21    22 


Q ss_pred             cCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHH
Q 006494          443 EGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRA  522 (643)
Q Consensus       443 ~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~i  522 (643)
                      ...++.+...|++.++.+|..|+.++..+.....  .. . .+.++.+..+|.+.++.++..|+.+|..++...+.....
T Consensus       141 ~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p--~~-v-~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~  216 (618)
T 1w63_A          141 RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVP--EL-M-EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAH  216 (618)
T ss_dssp             HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCG--GG-G-GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCh--HH-H-HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHH
Confidence            2357788888888899999999999988864322  11 1 257778888888888889999999999888643221111


Q ss_pred             HhcCcHHHHHHHhcc---------------CChhhHHHHHHHHHHHhCCh-hhHH-------------------------
Q 006494          523 IKAGIIPSLLKLLED---------------KALGMVDEALSILQLLASHP-EGRN-------------------------  561 (643)
Q Consensus       523 v~~G~v~~Lv~lL~~---------------~~~~~~~~Al~iL~nLa~~~-~~~~-------------------------  561 (643)
                      . ...++.++++|.+               .++-.+-..+.+|..++... +...                         
T Consensus       217 ~-~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~  295 (618)
T 1w63_A          217 F-RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILY  295 (618)
T ss_dssp             H-HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHH
T ss_pred             H-HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHH
Confidence            1 2566666666643               23444555566666655431 1000                         


Q ss_pred             ----HHHh--------cCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHH
Q 006494          562 ----EIGR--------LSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKA  629 (643)
Q Consensus       562 ----~i~~--------~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A  629 (643)
                          .+..        ..++..|..++.+.++..|..|+.+|..++...+...     ......++..+.+.+..+|++|
T Consensus       296 ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~-----~~~~~~i~~~l~d~d~~Ir~~a  370 (618)
T 1w63_A          296 ETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAV-----QRHRSTIVDCLKDLDVSIKRRA  370 (618)
T ss_dssp             HHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHH-----GGGHHHHHHGGGSSCHHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHH-----HHHHHHHHHHccCCChhHHHHH
Confidence                0000        0245667777777777788888888877776544321     1234455555566666777777


Q ss_pred             HHHHHHhhh
Q 006494          630 NSLLQHMSK  638 (643)
Q Consensus       630 ~~lL~~l~~  638 (643)
                      ..+|..+..
T Consensus       371 lelL~~l~~  379 (618)
T 1w63_A          371 MELSFALVN  379 (618)
T ss_dssp             HHHHHHHCC
T ss_pred             HHHHHHHcc
Confidence            777666654

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=98.34  E-value=6.7e-06  Score=96.40  Aligned_cols=274  Identities=11%  Similarity=0.078  Sum_probs=183.0

Q ss_pred             HHHHHHHHHhhcCC--CHHHHHHHHHHHHHhhhhChhhH-HHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccC-hh
Q 006494          360 IEEICSLIQNLSSS--QLNIKRDSVMKIRMLSKENPDNR-ILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLD-ET  435 (643)
Q Consensus       360 ~~~i~~Lv~~L~s~--~~~~~~~Al~~L~~La~~~~~~r-~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~  435 (643)
                      ...++.+++.+.+.  +..++..|++.+..+...-..+- ........++.+...+.+.+.+++..++.+|..+... +.
T Consensus       171 ~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~  250 (876)
T 1qgr_A          171 NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ  250 (876)
T ss_dssp             HHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGG
T ss_pred             HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHH
Confidence            34667777888776  68899999999988764322110 0001112566777788888899999999999887632 22


Q ss_pred             hHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHcccccc-------------------ccchhhc--cCChHHHHHHc
Q 006494          436 NKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDE-------------------NRVMVGN--LNGIPPLVNLL  494 (643)
Q Consensus       436 ~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~-------------------~k~~i~~--~g~i~~Lv~lL  494 (643)
                      .-........++.++..+.+.+..++..+..++..++....                   ....+..  ...++.++..+
T Consensus       251 ~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l  330 (876)
T 1qgr_A          251 YMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL  330 (876)
T ss_dssp             GCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHh
Confidence            11112233578888888888888899988888877763210                   0001100  23466777777


Q ss_pred             cc-------CChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCCh--hhHHHHHh
Q 006494          495 RY-------GSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHP--EGRNEIGR  565 (643)
Q Consensus       495 ~s-------~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~--~~~~~i~~  565 (643)
                      ..       ++...++.|+.+|..|+..-+.  .++ ..+++.+...+.+.+..+++.|+.+|..++...  +...... 
T Consensus       331 ~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-  406 (876)
T 1qgr_A          331 TKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-  406 (876)
T ss_dssp             TCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-
T ss_pred             hcccccccccccHHHHHHHHHHHHHHHHCcH--hhH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-
Confidence            42       3457888888999888753221  112 245666777777788889999999999999863  2222222 


Q ss_pred             cCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHH--HHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhhc
Q 006494          566 LSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFI--LAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSKR  639 (643)
Q Consensus       566 ~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~--~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~~  639 (643)
                      ...++.++..+.+.++.+|..|+.+|.+++...+...  ... -..+++.|+..+.+. ++++..|...|..+.+.
T Consensus       407 ~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~-l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~  480 (876)
T 1qgr_A          407 IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY-LAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEA  480 (876)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT-HHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHH-HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHH
Confidence            3578999999998899999999999999997543211  000 124677788877764 89999999999887653

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=98.32  E-value=2.2e-05  Score=88.75  Aligned_cols=253  Identities=13%  Similarity=0.082  Sum_probs=182.4

Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhH-H
Q 006494          360 IEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNK-R  438 (643)
Q Consensus       360 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k-~  438 (643)
                      ...++.+.+.|.+.++.+|..|+..+..+.+.+++.-     .+.++.+..+|.+.|+.++..|+.+|..++.++... .
T Consensus       141 ~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~  215 (618)
T 1w63_A          141 RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLA  215 (618)
T ss_dssp             HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHH
Confidence            3557888888999999999999999999988777543     257778888999999999999999999988654321 1


Q ss_pred             HHHhcCChHHHHHHHcc---------------CCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHccc------C
Q 006494          439 HIAREGAIPAIIEILQN---------------GTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRY------G  497 (643)
Q Consensus       439 ~i~~~g~i~~Lv~lL~~---------------~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s------~  497 (643)
                      .+  ...++.++.+|++               .++..+.....+|..+...+...    ....++.|..++..      .
T Consensus       216 ~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~----~~~~~~~L~~l~~~~~~~~~~  289 (618)
T 1w63_A          216 HF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDS----SEAMNDILAQVATNTETSKNV  289 (618)
T ss_dssp             HH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHH----HHTTHHHHHHHHHTSCCSSTH
T ss_pred             HH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHHHhccccccch
Confidence            22  2578888888763               36778888888888887543211    12344555565532      2


Q ss_pred             ChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHh
Q 006494          498 SIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIK  577 (643)
Q Consensus       498 ~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~  577 (643)
                      +..+...|+.++.++...+    .+. ..++..|..+|.+.++.++..|+..|..++...   ..++. .....++..+.
T Consensus       290 ~~aV~~ea~~~i~~l~~~~----~l~-~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~---p~~~~-~~~~~i~~~l~  360 (618)
T 1w63_A          290 GNAILYETVLTIMDIKSES----GLR-VLAINILGRFLLNNDKNIRYVALTSLLKTVQTD---HNAVQ-RHRSTIVDCLK  360 (618)
T ss_dssp             HHHHHHHHHHHHHHSCCCH----HHH-HHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHH---HHHHG-GGHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHhcCCCH----HHH-HHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhC---HHHHH-HHHHHHHHHcc
Confidence            3467788888888875432    222 246788899998888889999999999988752   12222 35667888888


Q ss_pred             cCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhhc
Q 006494          578 NGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSKR  639 (643)
Q Consensus       578 ~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~~  639 (643)
                      +.+..+|..|+.+|..++....  ..     .++..|...+.+.++..|+.+...+..+...
T Consensus       361 d~d~~Ir~~alelL~~l~~~~n--v~-----~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k  415 (618)
T 1w63_A          361 DLDVSIKRRAMELSFALVNGNN--IR-----GMMKELLYFLDSCEPEFKADCASGIFLAAEK  415 (618)
T ss_dssp             SSCHHHHHHHHHHHHHHCCSSS--TH-----HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHS
T ss_pred             CCChhHHHHHHHHHHHHccccc--HH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            8889999999999999987532  11     1356677777777888888888888777653

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=98.31  E-value=4.9e-06  Score=89.71  Aligned_cols=265  Identities=10%  Similarity=0.064  Sum_probs=176.4

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCC--CHHHHHHHHHHHHhcccChh-hH-H
Q 006494          363 ICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYP--DSKIQEHTVTALLNLSLDET-NK-R  438 (643)
Q Consensus       363 i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~nLs~~~~-~k-~  438 (643)
                      +..++..+.+++.++|..|-..|..+.+.+        ..+.+..|+.++.+.  +..++..|+..|.|+..... .. .
T Consensus         3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~--------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~   74 (462)
T 1ibr_B            3 LITILEKTVSPDRLELEAAQKFLERAAVEN--------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKA   74 (462)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHhhC--------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHH
Confidence            455676777889999999999888765321        123456677777664  67889999999998753210 00 0


Q ss_pred             -------HHH---hcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccC--ChhhHHHHH
Q 006494          439 -------HIA---REGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYG--SIRGKKDAA  506 (643)
Q Consensus       439 -------~i~---~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~--~~~~k~~A~  506 (643)
                             .+-   ....-..|+..|.+.+..+ ..++.++..++..+....  ...+.++.|+..+.++  ++..+..|+
T Consensus        75 ~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~--~w~~ll~~L~~~l~~~~~~~~~r~~al  151 (462)
T 1ibr_B           75 QYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVN--QWPELIPQLVANVTNPNSTEHMKESTL  151 (462)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGT--CCTTHHHHHHHHHHCTTCCHHHHHHHH
T ss_pred             HHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcccc--ccHHHHHHHHHHhccCCCCHHHHHHHH
Confidence                   000   1112234667777766566 677888888875432110  2367889999999988  889999999


Q ss_pred             HHHHHhhcC--CCchHHHHhcCcHHHHHHHhccC--ChhhHHHHHHHHHHHhCChh-hH-HHHHhcCcHHHHHHHHhcCC
Q 006494          507 TALFNLSIN--QSNKSRAIKAGIIPSLLKLLEDK--ALGMVDEALSILQLLASHPE-GR-NEIGRLSFIETLVEIIKNGT  580 (643)
Q Consensus       507 ~aL~nLs~~--~en~~~iv~~G~v~~Lv~lL~~~--~~~~~~~Al~iL~nLa~~~~-~~-~~i~~~g~i~~Lv~lL~~~s  580 (643)
                      .+|..++..  ++.-... -..+++.++..|.+.  +..++..|+.++.++...-. .- ......-.++.+...+.+.+
T Consensus       152 ~~l~~l~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  230 (462)
T 1ibr_B          152 EAIGYICQDIDPEQLQDK-SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD  230 (462)
T ss_dssp             HHHHHHHHHSCGGGTGGG-HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSS
T ss_pred             HHHHHHHHhCCchhhHhH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCC
Confidence            999999863  2211111 134778888888876  67899999999999775411 10 00011113566666677778


Q ss_pred             hHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhhc
Q 006494          581 PKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSKR  639 (643)
Q Consensus       581 ~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~~  639 (643)
                      +..+..++.+|..++...+.........++++.++..+.+.++.++..|...+..+.+.
T Consensus       231 ~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~  289 (462)
T 1ibr_B          231 TRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDE  289 (462)
T ss_dssp             HHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence            89999999999999876543221111126778788888888999999999988887653

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.29  E-value=2.1e-07  Score=74.53  Aligned_cols=45  Identities=18%  Similarity=0.349  Sum_probs=40.1

Q ss_pred             CCcccCccCcccccCCeecCCccc-ccHHhHHHHHhcCCCCCCCCCcccCC
Q 006494          270 PHEFLCPVTLEIMTDPVIVATGQT-YERESIQRWLNSNHKTCPKTGQILDH  319 (643)
Q Consensus       270 p~~f~Cpi~~~~m~dPv~~~~g~t-~~r~~I~~w~~~~~~~cP~~~~~l~~  319 (643)
                      .+++.||||++.+.+||+++|||+ ||+.|+.+     ...||+|+.++..
T Consensus        23 ~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~-----~~~CP~Cr~~i~~   68 (75)
T 2ecg_A           23 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA-----VDKCPMCYTVITF   68 (75)
T ss_dssp             HHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH-----CSBCTTTCCBCCC
T ss_pred             CCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC-----CCCCccCCceecC
Confidence            457889999999999999999999 99999964     3789999998865

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=98.24  E-value=2e-05  Score=92.18  Aligned_cols=271  Identities=13%  Similarity=0.103  Sum_probs=181.8

Q ss_pred             HHHHHHHHhhcCC-CHHHHHHHHHHHHHhhhhChhh-H--HHHHhhCChHHHHHHhcCC--CHHHHHHHHHHHHhccc-C
Q 006494          361 EEICSLIQNLSSS-QLNIKRDSVMKIRMLSKENPDN-R--ILIANNGGIRPLVQLLSYP--DSKIQEHTVTALLNLSL-D  433 (643)
Q Consensus       361 ~~i~~Lv~~L~s~-~~~~~~~Al~~L~~La~~~~~~-r--~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~nLs~-~  433 (643)
                      +.++.|++.+.++ ++..+..++..+..+++..... +  ... -...++.+...+.++  +.+++..|+.+|.++.. -
T Consensus       134 ~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~  212 (861)
T 2bpt_A          134 ELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSS-SNNILIAIVQGAQSTETSKAVRLAALNALADSLIFI  212 (861)
T ss_dssp             HHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGG-HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGC
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHH-HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            5789999999988 8999999999998888642211 1  000 112456677788776  78999999999988642 1


Q ss_pred             hhhH-HHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhc--c-CChHHHHHHcccCChhhHHHHHHHH
Q 006494          434 ETNK-RHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGN--L-NGIPPLVNLLRYGSIRGKKDAATAL  509 (643)
Q Consensus       434 ~~~k-~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~--~-g~i~~Lv~lL~s~~~~~k~~A~~aL  509 (643)
                      ..+- ........++.+...+.++++++|..++.+|..+.....  ..+..  . ..++.++..+.+.+..++..|+.++
T Consensus       213 ~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l  290 (861)
T 2bpt_A          213 KNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYY--TFMKPYMEQALYALTIATMKSPNDKVASMTVEFW  290 (861)
T ss_dssp             HHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHG--GGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred             HHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence            1110 000111246666777778889999999999988864322  11111  1 4566677777788889999999999


Q ss_pred             HHhhcCCCc------------------hHHHHhcCcHHHHHHHhccC-------ChhhHHHHHHHHHHHhCChhhHHHHH
Q 006494          510 FNLSINQSN------------------KSRAIKAGIIPSLLKLLEDK-------ALGMVDEALSILQLLASHPEGRNEIG  564 (643)
Q Consensus       510 ~nLs~~~en------------------~~~iv~~G~v~~Lv~lL~~~-------~~~~~~~Al~iL~nLa~~~~~~~~i~  564 (643)
                      ..++.....                  -...+ ..+++.++..+.+.       +..+...|..+|..++..-.  ..+.
T Consensus       291 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~--~~~~  367 (861)
T 2bpt_A          291 STICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG--NHIL  367 (861)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG--GGGH
T ss_pred             HHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc--HhHH
Confidence            888764211                  01111 45778888888642       23567788888888887422  1111


Q ss_pred             hcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCH-HHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhhc
Q 006494          565 RLSFIETLVEIIKNGTPKNKECATSVLLELGLNNS-YFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSKR  639 (643)
Q Consensus       565 ~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~-~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~~  639 (643)
                       ...++.+...+.+.+...|+.|+.+|..++.+.. ......+ ..+++.|+..+.+.++.+|..|..+|..+...
T Consensus       368 -~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~  441 (861)
T 2bpt_A          368 -EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADS  441 (861)
T ss_dssp             -HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Confidence             1345666666677788899999999999997643 3332222 25788888888888999999999888877653

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.24  E-value=5e-07  Score=73.53  Aligned_cols=48  Identities=15%  Similarity=0.289  Sum_probs=40.3

Q ss_pred             CcccCccCcccccC--------------Ceec-CCcccccHHhHHHHHhcCCCCCCCCCcccCC
Q 006494          271 HEFLCPVTLEIMTD--------------PVIV-ATGQTYERESIQRWLNSNHKTCPKTGQILDH  319 (643)
Q Consensus       271 ~~f~Cpi~~~~m~d--------------Pv~~-~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~  319 (643)
                      ++-.|+||++-|.+              ++.+ +|||.|.+.||.+|+.. +.+||+||+++..
T Consensus        14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~   76 (81)
T 2ecl_A           14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWVV   76 (81)
T ss_dssp             CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCCE
T ss_pred             CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcch
Confidence            45679999999987              4444 59999999999999997 4799999988753

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=98.24  E-value=1.3e-06  Score=106.86  Aligned_cols=271  Identities=11%  Similarity=0.072  Sum_probs=184.9

Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHH
Q 006494          361 EEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHI  440 (643)
Q Consensus       361 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i  440 (643)
                      ..+..++..+.+.+.++|..|...|.+..+.+...-..-.....++.|+..|.+.++.+|..|+.+|.+++..-.. ..+
T Consensus         6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~~~   84 (1230)
T 1u6g_C            6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-YQV   84 (1230)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-HHH
T ss_pred             hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-HHH
Confidence            5688899999999999999999999876643211000001123467788899989999999999999998743211 111


Q ss_pred             HhcCChHHHHHHHccCCHHHHHHHHHHHHHcccccccc------chhhccCChHHHHHHcc-cCChhhHHHHHHHHHHhh
Q 006494          441 AREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENR------VMVGNLNGIPPLVNLLR-YGSIRGKKDAATALFNLS  513 (643)
Q Consensus       441 ~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k------~~i~~~g~i~~Lv~lL~-s~~~~~k~~A~~aL~nLs  513 (643)
                        ...++.++..|.+++..+|..|+.+|..++..-...      ..-.....++.|+..+. +++...+..|+.+|..++
T Consensus        85 --~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~  162 (1230)
T 1u6g_C           85 --ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADML  162 (1230)
T ss_dssp             --HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence              225667777787877788988888888876322211      01112457889999988 478899999999999988


Q ss_pred             cC-CCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCC-hHHHHHHHHHH
Q 006494          514 IN-QSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGT-PKNKECATSVL  591 (643)
Q Consensus       514 ~~-~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s-~~~ke~A~~~L  591 (643)
                      .. ++.-.. .-...++.|+..|.+.+..++..|+.+|..++......  +. ...++.++..|.... ...+..|+.++
T Consensus       163 ~~~~~~l~~-~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~--~~-~~~l~~l~~~L~~~~~~~~r~~a~~~l  238 (1230)
T 1u6g_C          163 SRQGGLLVN-FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI--VF-VDLIEHLLSELSKNDSMSTTRTYIQCI  238 (1230)
T ss_dssp             HHTCSSCTT-THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC------C-TTHHHHHHHHHHHTCSSCSCTTHHHHH
T ss_pred             HHhHhHHHH-HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH--HH-HHHHHHHHHHhccCCchhHHHHHHHHH
Confidence            52 211111 11346677777787778889999999999999863321  22 356888888886543 35566778888


Q ss_pred             HHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhhc
Q 006494          592 LELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSKR  639 (643)
Q Consensus       592 ~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~~  639 (643)
                      ..++...+...... -..+++.++..+.+.++.+|+.|...+..+.+.
T Consensus       239 ~~l~~~~~~~~~~~-l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~  285 (1230)
T 1u6g_C          239 AAISRQAGHRIGEY-LEKIIPLVVKFCNVDDDELREYCIQAFESFVRR  285 (1230)
T ss_dssp             HHHHHHSSGGGTTS-CTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHC
T ss_pred             HHHHHHhHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            77776433211100 146899999999888899999999988877653

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.22  E-value=1.3e-05  Score=79.29  Aligned_cols=184  Identities=14%  Similarity=0.049  Sum_probs=136.8

Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHcccc-ccccchhhccCChHHHHHHcc-cCChhhHHHHHHHHHHhhcCCCchHHHHh
Q 006494          447 PAIIEILQNGTNEARENSAAALFSLSML-DENRVMVGNLNGIPPLVNLLR-YGSIRGKKDAATALFNLSINQSNKSRAIK  524 (643)
Q Consensus       447 ~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~-s~~~~~k~~A~~aL~nLs~~~en~~~iv~  524 (643)
                      +.+.+.+.+.++..|..|+..|..+... +.....- -...++.|..++. +.+..++..|+.+|..|+..-...-.-.-
T Consensus        18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~   96 (242)
T 2qk2_A           18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA   96 (242)
T ss_dssp             TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred             HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            3477888889999999999999888654 2211100 1245778888884 88999999999999999953221111122


Q ss_pred             cCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhc-cCCHHH-H
Q 006494          525 AGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELG-LNNSYF-I  602 (643)
Q Consensus       525 ~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~-~~~~~~-~  602 (643)
                      ..+++.|++.+.+.+..+++.|..+|.+++.....      ...++.+...+.+.++.+|+.++..|..+. ..++.. .
T Consensus        97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~  170 (242)
T 2qk2_A           97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALN  170 (242)
T ss_dssp             HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCC
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCcc
Confidence            34899999999998889999999999999886421      136788888898889999999999999954 443331 1


Q ss_pred             HHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494          603 LAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK  638 (643)
Q Consensus       603 ~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~  638 (643)
                      ...+ ..++|.|+.++.+..+++|..|...|..+..
T Consensus       171 ~~~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~  205 (242)
T 2qk2_A          171 KKLL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIK  205 (242)
T ss_dssp             HHHH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence            1122 3589999999999999999999999988754

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.21  E-value=2.9e-07  Score=77.22  Aligned_cols=66  Identities=8%  Similarity=0.167  Sum_probs=48.3

Q ss_pred             CcccCccCcccccCCeec---CCcccccHHhHHHHHhc----C---CCCCCC--CCcc--cCCCCCCchhhhHHHHHHHH
Q 006494          271 HEFLCPVTLEIMTDPVIV---ATGQTYERESIQRWLNS----N---HKTCPK--TGQI--LDHLSLAPNYALRNLIVQWC  336 (643)
Q Consensus       271 ~~f~Cpi~~~~m~dPv~~---~~g~t~~r~~I~~w~~~----~---~~~cP~--~~~~--l~~~~l~pn~~lr~lI~~w~  336 (643)
                      +.|.||||++.+.+|+.+   +|||.||+.|+.+|+..    |   ...||.  |+..  +....+ .+.....++++|.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i-~~ll~~~~~~ky~   82 (94)
T 1wim_A            4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEI-ECMVAAEIMQRYK   82 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHH-HHHSCHHHHHHHH
T ss_pred             CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHH-HHHCCHHHHHHHH
Confidence            578999999999999875   69999999999999973    3   246999  9887  543221 1233345566665


Q ss_pred             h
Q 006494          337 E  337 (643)
Q Consensus       337 ~  337 (643)
                      .
T Consensus        83 ~   83 (94)
T 1wim_A           83 K   83 (94)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=98.19  E-value=8.7e-07  Score=68.53  Aligned_cols=48  Identities=19%  Similarity=0.198  Sum_probs=43.1

Q ss_pred             CCcccCccCcccccCCeec--CCccc-ccHHhHHHHHhcCCCCCCCCCcccC
Q 006494          270 PHEFLCPVTLEIMTDPVIV--ATGQT-YERESIQRWLNSNHKTCPKTGQILD  318 (643)
Q Consensus       270 p~~f~Cpi~~~~m~dPv~~--~~g~t-~~r~~I~~w~~~~~~~cP~~~~~l~  318 (643)
                      +++..|+||++-..|++++  ||||. ||..|+.+|+.. +..||+||+++.
T Consensus         6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~   56 (64)
T 2vje_A            6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQ   56 (64)
T ss_dssp             GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCC
T ss_pred             CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchh
Confidence            4567899999999999988  99999 899999999986 578999999875

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.13  E-value=1.1e-05  Score=77.42  Aligned_cols=221  Identities=12%  Similarity=0.047  Sum_probs=161.2

Q ss_pred             ChHHHHHHhcCCCHHHHHHHHHHHHhcccC--hhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHcccccc-ccch
Q 006494          404 GIRPLVQLLSYPDSKIQEHTVTALLNLSLD--ETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDE-NRVM  480 (643)
Q Consensus       404 ~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~--~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~-~k~~  480 (643)
                      .+..|..+|...|+.++.+++.+|..+-..  ..-+..+++ ..++.++.++++.+..+...|..+|..|-.... ....
T Consensus        34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e-~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~  112 (265)
T 3b2a_A           34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLE-RHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT  112 (265)
T ss_dssp             HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH-HHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHH-HHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence            456688999999999999999999998754  333333333 479999999999999999999999998854322 2222


Q ss_pred             hhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhH
Q 006494          481 VGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGR  560 (643)
Q Consensus       481 i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~  560 (643)
                      +.  ..+.+|.+++.++++-....|+..+..|......      -+++..+.+++.+.+.+++..++.+|.+++...+..
T Consensus       113 y~--Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~  184 (265)
T 3b2a_A          113 FL--KAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADS  184 (265)
T ss_dssp             HH--HHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCC------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSC
T ss_pred             HH--HHHHHHHHHhcCCCchHHHHHHHHhCcCCcccch------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCH
Confidence            22  2568899999999999999999999988332222      235667888898899999999999999999865433


Q ss_pred             HHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHH--HHHHHHHcCcHHHHHHHH-hhCCHHHHHHHHHHHHHhh
Q 006494          561 NEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSY--FILAALQYGVYEHLVEIT-RCGTNRGQRKANSLLQHMS  637 (643)
Q Consensus       561 ~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~--~~~~~~~~g~i~~L~~ll-~~g~~~~k~~A~~lL~~l~  637 (643)
                      ..+  .+++.-+-++|++.++..++.|+.+|..+.+..-.  ....+  .++....-.+. ..|.|..+.+|..+-..+-
T Consensus       185 ~i~--~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~--~~~~~~v~~l~~~~~~~~~~~ka~~v~~~le  260 (265)
T 3b2a_A          185 GHL--TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIEL--LKISRIVDGLVYREGAPIIRLKAKKVSDLID  260 (265)
T ss_dssp             CCG--GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHH--HHHHHHHHHGGGCSSCHHHHHHHHHHHHHHH
T ss_pred             HHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHH--HHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Confidence            222  24666777889999999999999999999886421  11111  12222333344 5789999999988766553

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.12  E-value=1.4e-06  Score=67.19  Aligned_cols=47  Identities=17%  Similarity=0.195  Sum_probs=42.3

Q ss_pred             CcccCccCcccccCCeec--CCccc-ccHHhHHHHHhcCCCCCCCCCcccC
Q 006494          271 HEFLCPVTLEIMTDPVIV--ATGQT-YERESIQRWLNSNHKTCPKTGQILD  318 (643)
Q Consensus       271 ~~f~Cpi~~~~m~dPv~~--~~g~t-~~r~~I~~w~~~~~~~cP~~~~~l~  318 (643)
                      .+..|+||++-.+|++++  ||||. ||..|+.+|+.. +..||+||+++.
T Consensus         6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~   55 (63)
T 2vje_B            6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQ   55 (63)
T ss_dssp             GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCC
T ss_pred             cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhh
Confidence            456899999999999988  99998 999999999986 478999999875

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=98.07  E-value=2.3e-06  Score=73.18  Aligned_cols=47  Identities=17%  Similarity=0.378  Sum_probs=40.3

Q ss_pred             CcccCccCcccccCC------------------eecCCcccccHHhHHHHHhcCCCCCCCCCcccC
Q 006494          271 HEFLCPVTLEIMTDP------------------VIVATGQTYERESIQRWLNSNHKTCPKTGQILD  318 (643)
Q Consensus       271 ~~f~Cpi~~~~m~dP------------------v~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~  318 (643)
                      ++-.|+||++-|.+|                  +.++|||.|.+.||.+|+.. +.+||+|++++.
T Consensus        36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~  100 (106)
T 3dpl_R           36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE  100 (106)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred             CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcce
Confidence            345799999999987                  34789999999999999987 689999998764

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.06  E-value=9.7e-06  Score=80.11  Aligned_cols=180  Identities=12%  Similarity=0.115  Sum_probs=134.3

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHhhhhChhhH-HHHHhhCChHHHHHHhc-CCCHHHHHHHHHHHHhcccCh--hhHHHHH
Q 006494          366 LIQNLSSSQLNIKRDSVMKIRMLSKENPDNR-ILIANNGGIRPLVQLLS-YPDSKIQEHTVTALLNLSLDE--TNKRHIA  441 (643)
Q Consensus       366 Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r-~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~nLs~~~--~~k~~i~  441 (643)
                      +.+.+.+.++..|..|+..|..+....+... ..+  ...++.|...+. +.+..++..|+.+|..|+..-  .....  
T Consensus        20 l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~--   95 (242)
T 2qk2_A           20 FYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY--   95 (242)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH--
T ss_pred             HHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHH--
Confidence            6677889999999999999998886532210 000  123567888884 889999999999999888421  11111  


Q ss_pred             hcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCC-Cc--
Q 006494          442 REGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQ-SN--  518 (643)
Q Consensus       442 ~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~-en--  518 (643)
                      -...++.|+..+++.+..+|..|..+|..+......      ...++.|...+++.++.++..++..|..+.... ..  
T Consensus        96 ~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~  169 (242)
T 2qk2_A           96 ASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTAL  169 (242)
T ss_dssp             HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCc
Confidence            233788999999999999999999999998653221      236788889999999999999999999965432 21  


Q ss_pred             hHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC
Q 006494          519 KSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH  556 (643)
Q Consensus       519 ~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~  556 (643)
                      -...+ ...+|.|+.+|.+.+..+...|..++..++..
T Consensus       170 ~~~~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~  206 (242)
T 2qk2_A          170 NKKLL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL  206 (242)
T ss_dssp             CHHHH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred             cHHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence            12222 35899999999989999999999999988865

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=97.98  E-value=1.2e-06  Score=70.80  Aligned_cols=45  Identities=20%  Similarity=0.387  Sum_probs=40.2

Q ss_pred             CCcccCccCcccccCCeecCCccc-ccHHhHHHHHhcCCCCCCCCCcccCC
Q 006494          270 PHEFLCPVTLEIMTDPVIVATGQT-YERESIQRWLNSNHKTCPKTGQILDH  319 (643)
Q Consensus       270 p~~f~Cpi~~~~m~dPv~~~~g~t-~~r~~I~~w~~~~~~~cP~~~~~l~~  319 (643)
                      .++..|+||++.+.|||++||||. ||..|+.+|     ..||.|+.++..
T Consensus        16 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~   61 (79)
T 2yho_A           16 KEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL-----QSCPVCRSRVEH   61 (79)
T ss_dssp             HHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC-----SBCTTTCCBCCE
T ss_pred             CCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc-----CcCCCCCchhhC
Confidence            356789999999999999999999 999999887     399999998764

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=97.96  E-value=1.4e-06  Score=90.39  Aligned_cols=46  Identities=20%  Similarity=0.372  Sum_probs=41.8

Q ss_pred             CCCcccCccCcccccCCeecCCccc-ccHHhHHHHHhcCCCCCCCCCcccCC
Q 006494          269 VPHEFLCPVTLEIMTDPVIVATGQT-YERESIQRWLNSNHKTCPKTGQILDH  319 (643)
Q Consensus       269 ~p~~f~Cpi~~~~m~dPv~~~~g~t-~~r~~I~~w~~~~~~~cP~~~~~l~~  319 (643)
                      +.+++.||||++.+.+||++||||+ ||+.|+.+|     ..||.|+.++..
T Consensus       292 l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~  338 (345)
T 3t6p_A          292 LQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG  338 (345)
T ss_dssp             HHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred             CcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence            3467999999999999999999999 999999988     689999998763

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=97.93  E-value=3e-05  Score=94.73  Aligned_cols=229  Identities=9%  Similarity=0.064  Sum_probs=159.6

Q ss_pred             hHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhH-
Q 006494          359 LIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNK-  437 (643)
Q Consensus       359 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k-  437 (643)
                      ....++.+++.|.+.++.+|..|+..|..++.....  ..+  ...++.|+..|.+++..++..|+.+|..++..-... 
T Consensus        46 ~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~  121 (1230)
T 1u6g_C           46 ERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--YQV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPAS  121 (1230)
T ss_dssp             HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--HHH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC---
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--HHH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcc
Confidence            456788899999999999999999999999864433  111  124677888888888889988888888775321110 


Q ss_pred             -----HHHHhcCChHHHHHHHc-cCCHHHHHHHHHHHHHccccccccchhh--ccCChHHHHHHcccCChhhHHHHHHHH
Q 006494          438 -----RHIAREGAIPAIIEILQ-NGTNEARENSAAALFSLSMLDENRVMVG--NLNGIPPLVNLLRYGSIRGKKDAATAL  509 (643)
Q Consensus       438 -----~~i~~~g~i~~Lv~lL~-~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~--~~g~i~~Lv~lL~s~~~~~k~~A~~aL  509 (643)
                           ..-.....++.|+..+. ++++..+..|..++..++.....  .+.  -...++.|+..+.+.+..++..|+.+|
T Consensus       122 ~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~--~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al  199 (1230)
T 1u6g_C          122 SGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGG--LLVNFHPSILTCLLPQLTSPRLAVRKRTIIAL  199 (1230)
T ss_dssp             --CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCS--SCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHh--HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence                 01112346888889998 47889999999999988632111  111  134667777788888889999999999


Q ss_pred             HHhhcCCCchHHHHhcCcHHHHHHHhccCC-hhhHHHHHHHHHHHhCChhhHHHHHh--cCcHHHHHHHHhcCChHHHHH
Q 006494          510 FNLSINQSNKSRAIKAGIIPSLLKLLEDKA-LGMVDEALSILQLLASHPEGRNEIGR--LSFIETLVEIIKNGTPKNKEC  586 (643)
Q Consensus       510 ~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~-~~~~~~Al~iL~nLa~~~~~~~~i~~--~g~i~~Lv~lL~~~s~~~ke~  586 (643)
                      ..++...+..  + -...++.|++.|.+.. ......++.++..++.....  .+..  ...++.++..+.+.++..|+.
T Consensus       200 ~~l~~~~~~~--~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~~l~~l~~~ll~~l~d~~~~vR~~  274 (1230)
T 1u6g_C          200 GHLVMSCGNI--V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH--RIGEYLEKIIPLVVKFCNVDDDELREY  274 (1230)
T ss_dssp             HHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG--GGTTSCTTHHHHHHHHHSSCCTTTHHH
T ss_pred             HHHHHhcCHH--H-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence            9998754432  1 2346888888886642 34566677777777764211  2221  367899999998888889999


Q ss_pred             HHHHHHHhccCC
Q 006494          587 ATSVLLELGLNN  598 (643)
Q Consensus       587 A~~~L~~L~~~~  598 (643)
                      |+.++..++...
T Consensus       275 a~~~l~~l~~~~  286 (1230)
T 1u6g_C          275 CIQAFESFVRRC  286 (1230)
T ss_dssp             HHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHC
Confidence            999888887653

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=97.90  E-value=0.00058  Score=77.12  Aligned_cols=254  Identities=11%  Similarity=0.080  Sum_probs=162.2

Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHh--cCCCHHHHHHHHHHHHhcccChhhHH
Q 006494          361 EEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLL--SYPDSKIQEHTVTALLNLSLDETNKR  438 (643)
Q Consensus       361 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL--~~~~~~~~~~a~~~L~nLs~~~~~k~  438 (643)
                      -.+..+.+.|.+.++-++.-|++.+.++.  .++    +++ ..++.+.++|  .+.++.++..|+.++..+.....  .
T Consensus       111 L~iN~l~kDl~~~n~~ir~lALr~L~~i~--~~e----~~~-~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p--~  181 (621)
T 2vgl_A          111 LINNAIKNDLASRNPTFMGLALHCIANVG--SRE----MAE-AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP--D  181 (621)
T ss_dssp             HHHHHHHHHHHSCCHHHHHHHHHHHHHHC--CHH----HHH-HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG--G
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHhhccC--CHH----HHH-HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh--h
Confidence            45667888899999999999999999885  333    222 3567788999  88899999999999988764211  1


Q ss_pred             HHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcc----cC-------------Chhh
Q 006494          439 HIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLR----YG-------------SIRG  501 (643)
Q Consensus       439 ~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~----s~-------------~~~~  501 (643)
                      .+-..++++.+.++|.+.++.++.+|+.++..++..+..  .+  ...++.+++.|.    .+             ++-.
T Consensus       182 ~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~--~~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~  257 (621)
T 2vgl_A          182 LVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE--EF--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWL  257 (621)
T ss_dssp             GCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH--HH--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHH
T ss_pred             hcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH--HH--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchH
Confidence            111347999999999988999999999999998753321  11  123444444332    22             3445


Q ss_pred             HHHHHHHHHHhhcCC--CchHHHHhcCcHHHHHHHhcc---------CCh--hhHHHHHHHHHHHhCChhhHHHHHhcCc
Q 006494          502 KKDAATALFNLSINQ--SNKSRAIKAGIIPSLLKLLED---------KAL--GMVDEALSILQLLASHPEGRNEIGRLSF  568 (643)
Q Consensus       502 k~~A~~aL~nLs~~~--en~~~iv~~G~v~~Lv~lL~~---------~~~--~~~~~Al~iL~nLa~~~~~~~~i~~~g~  568 (643)
                      +...+..|..++...  +.+..+.+  .+..++..+.+         .+.  .+.-+|+.++..+...++...     .+
T Consensus       258 qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~-----~~  330 (621)
T 2vgl_A          258 SVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLV-----RA  330 (621)
T ss_dssp             HHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-----HH
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHH-----HH
Confidence            556666666655422  12222322  33333332211         122  567777777777764433222     35


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHh-hCCHHHHHHHHHHHHHhh
Q 006494          569 IETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITR-CGTNRGQRKANSLLQHMS  637 (643)
Q Consensus       569 i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~-~g~~~~k~~A~~lL~~l~  637 (643)
                      +..|..+|.+.++..|..|+..|..++...+.. . +. ......++..+. +.+..+|.+|..+|..+.
T Consensus       331 ~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~-~-~~-~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~  397 (621)
T 2vgl_A          331 CNQLGQFLQHRETNLRYLALESMCTLASSEFSH-E-AV-KTHIETVINALKTERDVSVRQRAVDLLYAMC  397 (621)
T ss_dssp             HHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTH-H-HH-HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhcCCCcchHHHHHHHHHHHHhccCcH-H-HH-HHHHHHHHHHhccCCCHhHHHHHHHHHHHHc
Confidence            667777887777888888888888888765421 1 11 234556666666 677777888887777665

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=97.86  E-value=0.0005  Score=77.64  Aligned_cols=255  Identities=11%  Similarity=0.071  Sum_probs=169.0

Q ss_pred             HHHHHHHHHhh--cCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhH
Q 006494          360 IEEICSLIQNL--SSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNK  437 (643)
Q Consensus       360 ~~~i~~Lv~~L--~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k  437 (643)
                      ...++.+.+.|  .+.++.+|..|+..+..+.+.+++.-.   ..+.++.|..+|.+.|+.++.+|+.+|..++.++.  
T Consensus       145 ~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~---~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~--  219 (621)
T 2vgl_A          145 EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVP---MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNP--  219 (621)
T ss_dssp             HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCC---CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCH--
T ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcC---chhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhCh--
Confidence            35667777888  788999999999999998876664321   24789999999999999999999999988864321  


Q ss_pred             HHHHhcCChHHHHHHHc----cC-------------CHHHHHHHHHHHHHccccc--cccchhhccCChHHHHHHc----
Q 006494          438 RHIAREGAIPAIIEILQ----NG-------------TNEARENSAAALFSLSMLD--ENRVMVGNLNGIPPLVNLL----  494 (643)
Q Consensus       438 ~~i~~~g~i~~Lv~lL~----~~-------------~~~~~~~Aa~~L~~Ls~~~--~~k~~i~~~g~i~~Lv~lL----  494 (643)
                      ..+  ...++.+++.|.    .+             ++-.+.....+|..+...+  +.+..+.  +.+..++..+    
T Consensus       220 ~~~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~--~~L~~il~~~~~~~  295 (621)
T 2vgl_A          220 EEF--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLT--ECLETILNKAQEPP  295 (621)
T ss_dssp             HHH--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHH--HHHHHHHHHHHSCC
T ss_pred             HHH--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHH--HHHHHHHHhhccCc
Confidence            111  123454554443    22             4667766777776665432  1222221  1233333222    


Q ss_pred             -----ccCCh--hhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcC
Q 006494          495 -----RYGSI--RGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLS  567 (643)
Q Consensus       495 -----~s~~~--~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g  567 (643)
                           ++.+.  .+...|+.++..+...+    .+.. .++..|..+|.+.++.++-.|+..|..++........+  ..
T Consensus       296 ks~~l~~~n~~~aVl~ea~~~i~~l~~~~----~~~~-~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~--~~  368 (621)
T 2vgl_A          296 KSKKVQHSNAKNAVLFEAISLIIHHDSEP----NLLV-RACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAV--KT  368 (621)
T ss_dssp             SCSSHHHHHHHHHHHHHHHHHHHHHCCCH----HHHH-HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHH--HT
T ss_pred             ccccccccchHHHHHHHHHHHHHhcCCcH----HHHH-HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHH--HH
Confidence                 11122  67777888888886322    2222 36778888888788889999999999998864322233  24


Q ss_pred             cHHHHHHHHh-cCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhh
Q 006494          568 FIETLVEIIK-NGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMS  637 (643)
Q Consensus       568 ~i~~Lv~lL~-~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~  637 (643)
                      ....++..|+ +.+..+|..|+.+|..++..  ....     .++.-|...+...+...++.+..-+..+.
T Consensus       369 ~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~--~Nv~-----~Iv~eL~~yl~~~d~~~~~~~v~~I~~la  432 (621)
T 2vgl_A          369 HIETVINALKTERDVSVRQRAVDLLYAMCDR--SNAQ-----QIVAEMLSYLETADYSIREEIVLKVAILA  432 (621)
T ss_dssp             THHHHHHHHTTCCCHHHHHHHHHHHHHHCCH--HHHH-----HHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCCCHhHHHHHHHHHHHHcCh--hhHH-----HHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            5677888888 88889999999999999863  3332     24556667777777777777766666554

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=97.82  E-value=3.5e-06  Score=75.01  Aligned_cols=120  Identities=20%  Similarity=0.190  Sum_probs=91.4

Q ss_pred             hCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchh
Q 006494          402 NGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMV  481 (643)
Q Consensus       402 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i  481 (643)
                      ...++.|+.+|+++++.++..|+.+|.++..           ..++.|+..|++.++.+|..|+.+|.++.         
T Consensus        11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~---------   70 (131)
T 1te4_A           11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD-----------EAFEPLLESLSNEDWRIRGAAAWIIGNFQ---------   70 (131)
T ss_dssp             ----------CCSSCCCSSSSCCSSTTSCSS-----------TTHHHHHHGGGCSCHHHHHHHHHHHGGGC---------
T ss_pred             cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc-----------hHHHHHHHHHcCCCHHHHHHHHHHHHhcC---------
Confidence            3567889999999999999888888876532           13789999999999999999999998774         


Q ss_pred             hccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHH
Q 006494          482 GNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQL  552 (643)
Q Consensus       482 ~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~n  552 (643)
                       ...+++.|+.+|.+.++.++..|+.+|.++.          ...+++.|+.++.+.+..+...|+.+|..
T Consensus        71 -~~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~  130 (131)
T 1te4_A           71 -DERAVEPLIKLLEDDSGFVRSGAARSLEQIG----------GERVRAAMEKLAETGTGFARKVAVNYLET  130 (131)
T ss_dssp             -SHHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------SHHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             -CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence             2346899999999999999999999999875          23468899999988888888888887754

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.81  E-value=1.6e-05  Score=64.15  Aligned_cols=50  Identities=14%  Similarity=0.295  Sum_probs=42.1

Q ss_pred             CCcccCccCcccc--cCCeecCCc-----ccccHHhHHHHHhcC-CCCCCCCCcccCC
Q 006494          270 PHEFLCPVTLEIM--TDPVIVATG-----QTYERESIQRWLNSN-HKTCPKTGQILDH  319 (643)
Q Consensus       270 p~~f~Cpi~~~~m--~dPv~~~~g-----~t~~r~~I~~w~~~~-~~~cP~~~~~l~~  319 (643)
                      .++..|+||++-+  .+|++.||+     |.|.+.||.+|+... ..+||+|+..+..
T Consensus        13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~   70 (80)
T 2d8s_A           13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM   70 (80)
T ss_dssp             TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred             CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence            4567899999766  479999996     999999999999864 4689999998874

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=97.81  E-value=0.00014  Score=72.36  Aligned_cols=188  Identities=11%  Similarity=0.064  Sum_probs=134.8

Q ss_pred             HHHHHccCCHHHHHHHHHHHHH-cccc-ccccchhhc-cCChHHHHHHc-ccCChhhHHHHHHHHHHhhcC---CCchHH
Q 006494          449 IIEILQNGTNEARENSAAALFS-LSML-DENRVMVGN-LNGIPPLVNLL-RYGSIRGKKDAATALFNLSIN---QSNKSR  521 (643)
Q Consensus       449 Lv~lL~~~~~~~~~~Aa~~L~~-Ls~~-~~~k~~i~~-~g~i~~Lv~lL-~s~~~~~k~~A~~aL~nLs~~---~en~~~  521 (643)
                      +...+.+.++..|..|...|.. +... .+......+ ...+..|...+ ++.+..++..|+.+|..|+..   ++....
T Consensus        21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~  100 (249)
T 2qk1_A           21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD  100 (249)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence            4556788899999999988888 7632 111110122 24577888888 677888999999999999852   222212


Q ss_pred             HHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHH--hcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCH
Q 006494          522 AIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIG--RLSFIETLVEIIKNGTPKNKECATSVLLELGLNNS  599 (643)
Q Consensus       522 iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~--~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~  599 (643)
                      .. .-++|.+++.+.+....+++.+..+|..++.+-+- ....  =..+++.|...|.+.++..|+.++.+|..++...+
T Consensus       101 y~-~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~  178 (249)
T 2qk1_A          101 YV-SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEK  178 (249)
T ss_dssp             HH-HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC
T ss_pred             HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence            22 23789999999988888999988888888874211 0010  01467788888988899999999999998886544


Q ss_pred             ---HHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494          600 ---YFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK  638 (643)
Q Consensus       600 ---~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~  638 (643)
                         ......+...++|.|..++.+.++.+|..|..+|..+.+
T Consensus       179 ~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          179 DGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK  220 (249)
T ss_dssp             SCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             CcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence               222222325799999999999999999999999988764

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.77  E-value=1.6e-05  Score=62.10  Aligned_cols=45  Identities=16%  Similarity=0.234  Sum_probs=40.2

Q ss_pred             CCcccCccCcccccCCeecCCccc-ccHHhHHHHHhcCCCCCCCCCcccCC
Q 006494          270 PHEFLCPVTLEIMTDPVIVATGQT-YERESIQRWLNSNHKTCPKTGQILDH  319 (643)
Q Consensus       270 p~~f~Cpi~~~~m~dPv~~~~g~t-~~r~~I~~w~~~~~~~cP~~~~~l~~  319 (643)
                      .++..|+||++-..+||++||||. ||..|+..     ...||+|++++..
T Consensus        13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~   58 (68)
T 2ea5_A           13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQE   58 (68)
T ss_dssp             CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred             CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence            467899999999999999999999 99999984     4789999998764

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=97.74  E-value=0.00044  Score=70.40  Aligned_cols=149  Identities=12%  Similarity=0.032  Sum_probs=123.5

Q ss_pred             HHHHHHcccCChhhHHHHHHHHHH-hhcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHh-
Q 006494          488 PPLVNLLRYGSIRGKKDAATALFN-LSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGR-  565 (643)
Q Consensus       488 ~~Lv~lL~s~~~~~k~~A~~aL~n-Ls~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~-  565 (643)
                      ..++.-|.+++.+.++.++.-|.. +.........++..+++..|+.+..+.+...+..++.+|.+|-.+.+|...+++ 
T Consensus       121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~  200 (339)
T 3dad_A          121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAH  200 (339)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHC
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCC
Confidence            445556677888889999999998 666888899999999999999999888889999999999999999999988885 


Q ss_pred             cCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHH--------cC--cHHHHHHHHh---hCCHHHHHHHHHH
Q 006494          566 LSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQ--------YG--VYEHLVEITR---CGTNRGQRKANSL  632 (643)
Q Consensus       566 ~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~--------~g--~i~~L~~ll~---~g~~~~k~~A~~l  632 (643)
                      ...|..+..++.+....+...|+.+|..+|..++.....+.+        .|  -.+.|+.+++   +++...+-+|..+
T Consensus       201 ~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtL  280 (339)
T 3dad_A          201 SDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTL  280 (339)
T ss_dssp             HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHH
Confidence            468999999999878888999999999999887543333322        11  3778899997   7788999999988


Q ss_pred             HHHh
Q 006494          633 LQHM  636 (643)
Q Consensus       633 L~~l  636 (643)
                      +--+
T Consensus       281 IN~l  284 (339)
T 3dad_A          281 INKT  284 (339)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8754

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=97.74  E-value=5.3e-06  Score=73.83  Aligned_cols=121  Identities=18%  Similarity=0.184  Sum_probs=89.1

Q ss_pred             hcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHH
Q 006494          442 REGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSR  521 (643)
Q Consensus       442 ~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~  521 (643)
                      ....++.++..|++.++.+|..|+.+|..+.          . ..++.|+.+|.+.++.++..|+.+|.++..       
T Consensus        10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~----------~-~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~-------   71 (131)
T 1te4_A           10 HSSGLVPRGSHMADENKWVRRDVSTALSRMG----------D-EAFEPLLESLSNEDWRIRGAAAWIIGNFQD-------   71 (131)
T ss_dssp             -----------CCSSCCCSSSSCCSSTTSCS----------S-TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS-------
T ss_pred             ccccHHHHHHHhcCCCHHHHHHHHHHHHHhC----------c-hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-------
Confidence            3456788888888877777766666665442          1 237999999999999999999999988752       


Q ss_pred             HHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHH
Q 006494          522 AIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLE  593 (643)
Q Consensus       522 iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~  593 (643)
                         ..+++.|+.+|.++++.+...|+.+|.++..          ..+++.|..++.+.++.++..|+.+|..
T Consensus        72 ---~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~  130 (131)
T 1te4_A           72 ---ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLET  130 (131)
T ss_dssp             ---HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence               2468999999999999999999999998762          3468899999988889999999888754

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=97.69  E-value=9.6e-05  Score=73.49  Aligned_cols=187  Identities=6%  Similarity=0.091  Sum_probs=131.3

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHH-hhhhChhhHHHHHh-hCChHHHHHHh-cCCCHHHHHHHHHHHHhcccCh---hhH-H
Q 006494          366 LIQNLSSSQLNIKRDSVMKIRM-LSKENPDNRILIAN-NGGIRPLVQLL-SYPDSKIQEHTVTALLNLSLDE---TNK-R  438 (643)
Q Consensus       366 Lv~~L~s~~~~~~~~Al~~L~~-La~~~~~~r~~i~~-~g~i~~Lv~lL-~~~~~~~~~~a~~~L~nLs~~~---~~k-~  438 (643)
                      +-+.+.+.+|..|..|+..|.. +....+.......+ ...+..|...+ +..+..++..|+.+|..|+..-   ... .
T Consensus        21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~  100 (249)
T 2qk1_A           21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD  100 (249)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence            3456688999999999999999 87443221100001 12356677888 6788999999999999987321   111 1


Q ss_pred             HHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhh--ccCChHHHHHHcccCChhhHHHHHHHHHHhhcCC
Q 006494          439 HIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVG--NLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQ  516 (643)
Q Consensus       439 ~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~--~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~  516 (643)
                      ..  .-.++.+++.+++....++..+..++..+...-+- ....  -...++.|+..|++.++.+|..++.+|..+....
T Consensus       101 y~--~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~  177 (249)
T 2qk1_A          101 YV--SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEE  177 (249)
T ss_dssp             HH--HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred             HH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence            11  12588899999888888988888888887642211 1111  1236788888999999999999999999888643


Q ss_pred             Cch-HH---HHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhC
Q 006494          517 SNK-SR---AIKAGIIPSLLKLLEDKALGMVDEALSILQLLAS  555 (643)
Q Consensus       517 en~-~~---iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~  555 (643)
                      +.. ..   .+....+|.|.+++.+.++.+++.|..+|..++.
T Consensus       178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK  220 (249)
T ss_dssp             CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            321 22   2225789999999999999999999999988775

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=97.66  E-value=6.2e-06  Score=71.51  Aligned_cols=45  Identities=20%  Similarity=0.465  Sum_probs=0.0

Q ss_pred             ccCccCcccccCCee------------------cCCcccccHHhHHHHHhcCCCCCCCCCcccC
Q 006494          273 FLCPVTLEIMTDPVI------------------VATGQTYERESIQRWLNSNHKTCPKTGQILD  318 (643)
Q Consensus       273 f~Cpi~~~~m~dPv~------------------~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~  318 (643)
                      -.|+||++-|.+|.+                  .+|||.|++.||.+|+.. +.+||.|++++.
T Consensus        49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~  111 (117)
T 4a0k_B           49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE  111 (117)
T ss_dssp             ----------------------------------------------------------------
T ss_pred             CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeee
Confidence            479999999988532                  489999999999999997 689999998754

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=97.66  E-value=0.00078  Score=71.92  Aligned_cols=230  Identities=12%  Similarity=0.085  Sum_probs=155.6

Q ss_pred             HHHHHhcC-CCHHHHHHHHHHHHhcccChhhHHHHHhcC--ChHHHHHHHcc---------------C--CHHHHHHHHH
Q 006494          407 PLVQLLSY-PDSKIQEHTVTALLNLSLDETNKRHIAREG--AIPAIIEILQN---------------G--TNEARENSAA  466 (643)
Q Consensus       407 ~Lv~lL~~-~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g--~i~~Lv~lL~~---------------~--~~~~~~~Aa~  466 (643)
                      .++..|.. .+.+.+.-++.+|..|...+..|..+.+.+  .+++++.+++.               +  ....+.++.-
T Consensus       171 ~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll  250 (480)
T 1ho8_A          171 NLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLL  250 (480)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHH
T ss_pred             HHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHH
Confidence            34555554 245667778888888888899998887543  46777665541               1  2556889999


Q ss_pred             HHHHccccccccchhhccCCh--HHHHHHcccC-ChhhHHHHHHHHHHhhcCCC-ch----HHHH-hcCcHHHHHHHhcc
Q 006494          467 ALFSLSMLDENRVMVGNLNGI--PPLVNLLRYG-SIRGKKDAATALFNLSINQS-NK----SRAI-KAGIIPSLLKLLED  537 (643)
Q Consensus       467 ~L~~Ls~~~~~k~~i~~~g~i--~~Lv~lL~s~-~~~~k~~A~~aL~nLs~~~e-n~----~~iv-~~G~v~~Lv~lL~~  537 (643)
                      +++-||+.++....+...+..  +.|+.+++.. ...+.+-++.+|.||..... +.    ..++ ..++ +++++.|..
T Consensus       251 ~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~  329 (480)
T 1ho8_A          251 LIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSE  329 (480)
T ss_dssp             HHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHS
T ss_pred             HHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhh
Confidence            999999998877777665533  6677777665 67888999999999987542 22    2233 3344 556666654


Q ss_pred             ---CChhhHHHHHHHHHHH-------hCC---------------hhh---------HHHHHhc--CcHHHHHHHHhc---
Q 006494          538 ---KALGMVDEALSILQLL-------ASH---------------PEG---------RNEIGRL--SFIETLVEIIKN---  578 (643)
Q Consensus       538 ---~~~~~~~~Al~iL~nL-------a~~---------------~~~---------~~~i~~~--g~i~~Lv~lL~~---  578 (643)
                         .++++.+..-.+...|       ++.               |..         ...+.+.  ..+..|+++|.+   
T Consensus       330 rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~  409 (480)
T 1ho8_A          330 RKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVR  409 (480)
T ss_dssp             SCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhcc
Confidence               4555554433322222       211               111         1122222  357889999974   


Q ss_pred             -------CChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhh
Q 006494          579 -------GTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMS  637 (643)
Q Consensus       579 -------~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~  637 (643)
                             .++..-.-|+.=+..++++.|..+..+.+.|+-..++.++.+.++.+|..|...++.+-
T Consensus       410 ~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm  475 (480)
T 1ho8_A          410 NGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAII  475 (480)
T ss_dssp             TTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred             ccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence                   23555566677788888888877777888899999999999999999999998887654

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=97.62  E-value=0.00099  Score=67.79  Aligned_cols=178  Identities=14%  Similarity=0.086  Sum_probs=136.3

Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHH
Q 006494          360 IEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRH  439 (643)
Q Consensus       360 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~  439 (643)
                      .-.+..++..|.+++......++..|+.+-..+.+.-..+++.+++..|++.....+..+|..++++|.+|-.+......
T Consensus       117 s~ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~g  196 (339)
T 3dad_A          117 SVRVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLG  196 (339)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred             HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccc
Confidence            35677888888888899999999999985446777888888889999999999999999999999999999988888877


Q ss_pred             HH-hcCChHHHHHHHccCCHHHHHHHHHHHHHcccccc-ccchhhc--------cC--ChHHHHHHcc---cCChhhHHH
Q 006494          440 IA-REGAIPAIIEILQNGTNEARENSAAALFSLSMLDE-NRVMVGN--------LN--GIPPLVNLLR---YGSIRGKKD  504 (643)
Q Consensus       440 i~-~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~-~k~~i~~--------~g--~i~~Lv~lL~---s~~~~~k~~  504 (643)
                      ++ ...+|..|..++.+.+..+...|..+|..+....+ +...+.+        .|  -+..|+.+|+   +++.+.+.+
T Consensus       197 vvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~  276 (339)
T 3dad_A          197 VVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVY  276 (339)
T ss_dssp             HHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHH
T ss_pred             hhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHH
Confidence            76 55689999999998888889999999999976554 3222221        11  3788999997   678899999


Q ss_pred             HHHHHHHhhcCCCc---hHHHH----hcCcHHHHHHHhcc
Q 006494          505 AATALFNLSINQSN---KSRAI----KAGIIPSLLKLLED  537 (643)
Q Consensus       505 A~~aL~nLs~~~en---~~~iv----~~G~v~~Lv~lL~~  537 (643)
                      |+..|-.+....+.   +..++    +.|.=..+.+.+..
T Consensus       277 amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~  316 (339)
T 3dad_A          277 TVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGT  316 (339)
T ss_dssp             HHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSC
T ss_pred             HHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhc
Confidence            98887766553332   22333    34544555665654

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=97.40  E-value=0.058  Score=49.82  Aligned_cols=214  Identities=16%  Similarity=0.169  Sum_probs=148.0

Q ss_pred             hHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhc-CCCHHHHHHHHHHHHhcc-cChhh
Q 006494          359 LIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLS-YPDSKIQEHTVTALLNLS-LDETN  436 (643)
Q Consensus       359 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~nLs-~~~~~  436 (643)
                      ++..+..++..|..+-|.+|..|+..+..+++.-++....+.     ..|+.+++ +...........++..++ ..++.
T Consensus        30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~-----~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~  104 (253)
T 2db0_A           30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPML-----KKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPEL  104 (253)
T ss_dssp             CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHH-----HHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred             hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHH-----HHHHHHHhhcccCchHHHHHHHHhHHHHhCHHH
Confidence            567899999999999999999999999999988877665554     34666654 444444334445555554 22322


Q ss_pred             HHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCC
Q 006494          437 KRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQ  516 (643)
Q Consensus       437 k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~  516 (643)
                      ..     +.+|.+..-.+-|++.++.+.+.+|..++..+..  .  -.+.+.-+..++.+.+..-+   +.+|.-++.-.
T Consensus       105 v~-----~vVp~lfanyrigd~kikIn~~yaLeeIaranP~--l--~~~v~rdi~smltskd~~Dk---l~aLnFi~alG  172 (253)
T 2db0_A          105 VK-----SMIPVLFANYRIGDEKTKINVSYALEEIAKANPM--L--MASIVRDFMSMLSSKNREDK---LTALNFIEAMG  172 (253)
T ss_dssp             HH-----HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHH--H--HHHHHHHHHHHTSCSSHHHH---HHHHHHHHTCC
T ss_pred             HH-----hhHHHHHHHHhcCCccceecHHHHHHHHHHhChH--H--HHHHHHHHHHHhcCCChHHH---HHHHHHHHHHh
Confidence            21     2456666666779999999999999988753221  1  12456778888887774433   44455556667


Q ss_pred             CchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC-hhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhc
Q 006494          517 SNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH-PEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELG  595 (643)
Q Consensus       517 en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~  595 (643)
                      +|..+.+.. .+|.|+.+|.+.+.-+...|+.+|.+|+.. +..|..      |...++-+.+.|...+......|..|.
T Consensus       173 en~~~yv~P-fLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRki------i~~kl~e~~D~S~lv~~~V~egL~rl~  245 (253)
T 2db0_A          173 ENSFKYVNP-FLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKV------VIKRLEELNDTSSLVNKTVKEGISRLL  245 (253)
T ss_dssp             TTTHHHHGG-GHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHH------HHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred             ccCccccCc-chHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHH------HHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence            777776654 789999999999988999999999999996 444433      334455567778777777666666554


Q ss_pred             c
Q 006494          596 L  596 (643)
Q Consensus       596 ~  596 (643)
                      .
T Consensus       246 l  246 (253)
T 2db0_A          246 L  246 (253)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.39  E-value=0.013  Score=68.53  Aligned_cols=262  Identities=13%  Similarity=0.103  Sum_probs=177.6

Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhCh---hhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcc--cChh
Q 006494          361 EEICSLIQNLSSSQLNIKRDSVMKIRMLSKENP---DNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLS--LDET  435 (643)
Q Consensus       361 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~---~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs--~~~~  435 (643)
                      +.+..|.+.+......  ..|+..+..++....   ..-..+.  +.++.++..+.+.+..++..|-.++..+.  .++.
T Consensus        54 ~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~  129 (986)
T 2iw3_A           54 HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPV  129 (986)
T ss_dssp             HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGG
T ss_pred             hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHH
Confidence            4566666666543222  677777877774432   2222333  57888888888888888887776666553  2332


Q ss_pred             hHHHHHhcCChHHHHHHHccC-CHHHHHHHHHHHHHccccccccchhhc--cCChHHHHHHcccCChhhHHHHHHHHHHh
Q 006494          436 NKRHIAREGAIPAIIEILQNG-TNEARENSAAALFSLSMLDENRVMVGN--LNGIPPLVNLLRYGSIRGKKDAATALFNL  512 (643)
Q Consensus       436 ~k~~i~~~g~i~~Lv~lL~~~-~~~~~~~Aa~~L~~Ls~~~~~k~~i~~--~g~i~~Lv~lL~s~~~~~k~~A~~aL~nL  512 (643)
                      ..     ...+|.|+..|++. .+..+..|..++..|+...  ..+++.  ...||.+...+.+..+++++.|..++..+
T Consensus       130 a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~  202 (986)
T 2iw3_A          130 AI-----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA--KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKA  202 (986)
T ss_dssp             GH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred             HH-----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHH
Confidence            22     23578899888765 6999999999999998543  445544  57889999999888999999999999999


Q ss_pred             hcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHH
Q 006494          513 SINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLL  592 (643)
Q Consensus       513 s~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~  592 (643)
                      |..-+|+..   ...+|.|++.+.+++  -+.+++..|..-..-.+.-.-.. +=.+|.|.+=|...+...+..++.+..
T Consensus       203 ~~~~~n~d~---~~~~~~~~~~~~~p~--~~~~~~~~l~~~tfv~~v~~~~l-~~~~p~l~r~l~~~~~~~~r~~~~~~~  276 (986)
T 2iw3_A          203 TETVDNKDI---ERFIPSLIQCIADPT--EVPETVHLLGATTFVAEVTPATL-SIMVPLLSRGLNERETGIKRKSAVIID  276 (986)
T ss_dssp             GGGCCCTTT---GGGHHHHHHHHHCTT--HHHHHHHHHTTCCCCSCCCHHHH-HHHHHHHHHHHTSSSHHHHHHHHHHHH
T ss_pred             HhcCCCcch---hhhHHHHHHHhcChh--hhHHHHHHhhcCeeEeeecchhH-HHHHHHHHhhhccCcchhheeeEEEEc
Confidence            986666543   457899999998663  25555544433322222111111 113455555566667888899999999


Q ss_pred             HhccC--CHHHHHHHHHcCcHHHHHHHHhh-CCHHHHHHHHHHHHHhhhcc
Q 006494          593 ELGLN--NSYFILAALQYGVYEHLVEITRC-GTNRGQRKANSLLQHMSKRE  640 (643)
Q Consensus       593 ~L~~~--~~~~~~~~~~~g~i~~L~~ll~~-g~~~~k~~A~~lL~~l~~~~  640 (643)
                      |+|.-  ++.....++ ...+|-|.+.... ..|++|+.|...+..|.+..
T Consensus       277 n~~~lv~~~~~~~~f~-~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~  326 (986)
T 2iw3_A          277 NMCKLVEDPQVIAPFL-GKLLPGLKSNFATIADPEAREVTLRALKTLRRVG  326 (986)
T ss_dssp             HHHTTCCCHHHHHHHH-TTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhcCCHHHHhhhh-hhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhh
Confidence            99974  555444433 4677888776654 48999999999999887643

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=97.32  E-value=0.002  Score=66.98  Aligned_cols=264  Identities=10%  Similarity=0.006  Sum_probs=143.2

Q ss_pred             CCchhhhHHHHHHHHhhccccCCCCCCCCCCCCCcHHhHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHh
Q 006494          322 LAPNYALRNLIVQWCEKNNVELPKKDTNTGSDASSAALIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIAN  401 (643)
Q Consensus       322 l~pn~~lr~lI~~w~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~  401 (643)
                      ..+|..+|.++--+....    ++....         ..-.+..+.+.+.++++-++-.|++.+..+..  ++.-..   
T Consensus        78 ~s~d~~lKrLvYLyl~~~----~~~~~e---------~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~--~~m~~~---  139 (355)
T 3tjz_B           78 QSNDPTLRRMCYLTIKEM----SCIAED---------VIIVTSSLTKDMTGKEDSYRGPAVRALCQITD--STMLQA---  139 (355)
T ss_dssp             GCCCHHHHHHHHHHHHHH----TTTSSC---------GGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCC--TTTHHH---
T ss_pred             cCCCHHHHHHHHHHHHHh----CCCHHH---------HHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCC--HHHHHH---
Confidence            356888999876555422    111110         12467788999999999999999999998863  332222   


Q ss_pred             hCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchh
Q 006494          402 NGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMV  481 (643)
Q Consensus       402 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i  481 (643)
                        ..+.+.+.|.+.++.++..|+-+...|....  .+. + .++++.+-+++.+.++-++.+|.++|..+...+.     
T Consensus       140 --l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~--pe~-v-~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~-----  208 (355)
T 3tjz_B          140 --IERYMKQAIVDKVPSVSSSALVSSLHLLKCS--FDV-V-KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR-----  208 (355)
T ss_dssp             --HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC--HHH-H-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH-----
T ss_pred             --HHHHHHHHcCCCCHHHHHHHHHHHHHHhccC--HHH-H-HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch-----
Confidence              3456778888999999999998888876332  222 2 2689999999999999999999999999875431     


Q ss_pred             hccCChHHHHHHcccC---ChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChh
Q 006494          482 GNLNGIPPLVNLLRYG---SIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPE  558 (643)
Q Consensus       482 ~~~g~i~~Lv~lL~s~---~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~  558 (643)
                         .++..|+.-+..+   ++-.+..-+..+..++...+   .-.....++.|...|.+.++.++-+|+.++..+...+.
T Consensus       209 ---~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~---~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~  282 (355)
T 3tjz_B          209 ---LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDED---GSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSA  282 (355)
T ss_dssp             ---HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--------------------CCCCCSSHHHHHHHHHHHTC------
T ss_pred             ---HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccc---hhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCH
Confidence               1455666666554   23222222233322222110   01223456667777777888899999999988866322


Q ss_pred             hHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHH
Q 006494          559 GRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKA  629 (643)
Q Consensus       559 ~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A  629 (643)
                      .   .. ..++..|..++.+.++..|-.|+..|..+....|+..+.     .-.-+..++.+++.-+.-.|
T Consensus       283 ~---~~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~-----~n~~ie~li~d~n~sI~t~A  344 (355)
T 3tjz_B          283 K---EL-APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTA-----CNLDLENLVTDANRSIATLA  344 (355)
T ss_dssp             ---------CCCTHHHHHHSSSSSSHHHHHHCC--------------------------------------
T ss_pred             H---HH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHH-----HHHHHHHHccCCcHhHHHHH
Confidence            1   11 245677778888888999999999999998877754432     23344455555554443333

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=97.24  E-value=0.019  Score=66.57  Aligned_cols=235  Identities=12%  Similarity=0.037  Sum_probs=152.0

Q ss_pred             HHHHHHHhhcCCC--------HHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccC
Q 006494          362 EICSLIQNLSSSQ--------LNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLD  433 (643)
Q Consensus       362 ~i~~Lv~~L~s~~--------~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~  433 (643)
                      .+..|...|.+.+        +.++..|+-.|....-.+.  +     ..+++.|..+|...+....+.|+.+|..+-..
T Consensus       430 ~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~--~-----eev~e~L~~~L~dd~~~~~~~AalALGli~vG  502 (963)
T 4ady_A          430 TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSA--N-----IEVYEALKEVLYNDSATSGEAAALGMGLCMLG  502 (963)
T ss_dssp             HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCC--C-----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCC--C-----HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcc
Confidence            4445555554433        3455556656655432111  1     11356678888777666666666666654333


Q ss_pred             hhhHHHHHhcCChHHHHHHHc-cCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHccc-CChhhHHHHHHHHHH
Q 006494          434 ETNKRHIAREGAIPAIIEILQ-NGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRY-GSIRGKKDAATALFN  511 (643)
Q Consensus       434 ~~~k~~i~~~g~i~~Lv~lL~-~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s-~~~~~k~~A~~aL~n  511 (643)
                      ..|..      ++..|+..+. +.+..++..++-.|..+..        ++...++.++..|.. .++-++..|+.++.-
T Consensus       503 Tgn~~------ai~~LL~~~~e~~~e~vrR~aalgLGll~~--------g~~e~~~~li~~L~~~~dp~vRygaa~algl  568 (963)
T 4ady_A          503 TGKPE------AIHDMFTYSQETQHGNITRGLAVGLALINY--------GRQELADDLITKMLASDESLLRYGGAFTIAL  568 (963)
T ss_dssp             CCCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTT--------TCGGGGHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred             cCCHH------HHHHHHHHHhccCcHHHHHHHHHHHHhhhC--------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            22222      3455666554 4467778778877777643        444577899988865 467777777777765


Q ss_pred             hhcCCCchHHHHhcCcHHHHHHHhc-cCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHH-hcCChHHHHHHHH
Q 006494          512 LSINQSNKSRAIKAGIIPSLLKLLE-DKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEII-KNGTPKNKECATS  589 (643)
Q Consensus       512 Ls~~~en~~~iv~~G~v~~Lv~lL~-~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL-~~~s~~~ke~A~~  589 (643)
                      -+...+|..      +|+.|+..+. +.+..++..|+..|+.++....        ..++.++++| +++++.+|..|+.
T Consensus       569 AyaGTGn~~------aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~--------e~v~rlv~~L~~~~d~~VR~gAal  634 (963)
T 4ady_A          569 AYAGTGNNS------AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY--------TTVPRIVQLLSKSHNAHVRCGTAF  634 (963)
T ss_dssp             HTTTSCCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC--------SSHHHHTTTGGGCSCHHHHHHHHH
T ss_pred             HhcCCCCHH------HHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH--------HHHHHHHHHHHhcCCHHHHHHHHH
Confidence            555555543      3555666664 4566788888888888776532        4567777754 5688999999999


Q ss_pred             HHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494          590 VLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK  638 (643)
Q Consensus       590 ~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~  638 (643)
                      +|..+|.+++.       ..++..|..++.+.++.+++.|...|-.+.-
T Consensus       635 ALGli~aGn~~-------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~  676 (963)
T 4ady_A          635 ALGIACAGKGL-------QSAIDVLDPLTKDPVDFVRQAAMIALSMILI  676 (963)
T ss_dssp             HHHHHTSSSCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHST
T ss_pred             HHHHhccCCCc-------HHHHHHHHHHccCCCHHHHHHHHHHHHHHhc
Confidence            99999987653       1356677888888889999888888877653

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=97.15  E-value=0.0072  Score=64.56  Aligned_cols=229  Identities=14%  Similarity=0.132  Sum_probs=147.9

Q ss_pred             HHHhhcC-CCHHHHHHHHHHHHHhhhhChhhHHHHHhhC--ChHHHHHHhcC---------------C--CHHHHHHHHH
Q 006494          366 LIQNLSS-SQLNIKRDSVMKIRMLSKENPDNRILIANNG--GIRPLVQLLSY---------------P--DSKIQEHTVT  425 (643)
Q Consensus       366 Lv~~L~s-~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g--~i~~Lv~lL~~---------------~--~~~~~~~a~~  425 (643)
                      ++..|.. .+.+.+.-++..+..|. ..++.|..+.+.+  .++.++.+++.               +  ...++.+++-
T Consensus       172 ~~~~L~~~~~~~~~~i~v~~L~~Ll-~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll  250 (480)
T 1ho8_A          172 LINILQNIEQMDTCYVCIRLLQELA-VIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLL  250 (480)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHH-TSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHH
T ss_pred             HHHHhccccCCchHHHHHHHHHHHh-cchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHH
Confidence            4444544 23455667888888888 4678888887543  36666544331               1  3566899999


Q ss_pred             HHHhcccChhhHHHHHhcCCh--HHHHHHHccC-CHHHHHHHHHHHHHcccccc-c-cc----hhhccCChHHHHHHccc
Q 006494          426 ALLNLSLDETNKRHIAREGAI--PAIIEILQNG-TNEARENSAAALFSLSMLDE-N-RV----MVGNLNGIPPLVNLLRY  496 (643)
Q Consensus       426 ~L~nLs~~~~~k~~i~~~g~i--~~Lv~lL~~~-~~~~~~~Aa~~L~~Ls~~~~-~-k~----~i~~~g~i~~Lv~lL~s  496 (643)
                      +++-|+.+++....+...+..  +.|+.+++.. -..+...+.+++.||..... . ..    .+...++ ..++..|..
T Consensus       251 ~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~  329 (480)
T 1ho8_A          251 LIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSE  329 (480)
T ss_dssp             HHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHS
T ss_pred             HHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhh
Confidence            999999999888778766533  5666777754 46677778999999975441 1 11    2222333 456666654


Q ss_pred             C---ChhhHHHHHHH-------HHH---------------hhcCCCchH-HHH--------h--cCcHHHHHHHhcc---
Q 006494          497 G---SIRGKKDAATA-------LFN---------------LSINQSNKS-RAI--------K--AGIIPSLLKLLED---  537 (643)
Q Consensus       497 ~---~~~~k~~A~~a-------L~n---------------Ls~~~en~~-~iv--------~--~G~v~~Lv~lL~~---  537 (643)
                      .   +++...+--..       +..               |..+|..+. .+.        +  -.++..|+++|.+   
T Consensus       330 rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~  409 (480)
T 1ho8_A          330 RKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVR  409 (480)
T ss_dssp             SCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhcc
Confidence            3   43333322111       111               222333332 332        2  2367889999973   


Q ss_pred             -------CChhhHHHHHHHHHHHhCC-hhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhcc
Q 006494          538 -------KALGMVDEALSILQLLASH-PEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGL  596 (643)
Q Consensus       538 -------~~~~~~~~Al~iL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~  596 (643)
                             .++.+..-|+.=++.++.+ |.||..+-+.|+=..+++++.+.++++|.+|+.++-.+-.
T Consensus       410 ~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~  476 (480)
T 1ho8_A          410 NGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG  476 (480)
T ss_dssp             TTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred             ccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence                   2455666677778888886 8999888888998899999999999999999998876543

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=97.05  E-value=0.14  Score=47.39  Aligned_cols=210  Identities=14%  Similarity=0.172  Sum_probs=140.8

Q ss_pred             CChHHHHHHhcCCCHHHHHHHHHHHHhccc-ChhhHHHHHhcCChHHHHHHHc-cCCHHHHHHHHHHHHHccccccccch
Q 006494          403 GGIRPLVQLLSYPDSKIQEHTVTALLNLSL-DETNKRHIAREGAIPAIIEILQ-NGTNEARENSAAALFSLSMLDENRVM  480 (643)
Q Consensus       403 g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~k~~i~~~g~i~~Lv~lL~-~~~~~~~~~Aa~~L~~Ls~~~~~k~~  480 (643)
                      ..+..++.+|..+-|.+|.+|+..+.+++. .++....+     +..|+.+++ +.....-+..+.++..++....   .
T Consensus        32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P---e  103 (253)
T 2db0_A           32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP---E  103 (253)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH---H
T ss_pred             HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCH---H
Confidence            467789999999899999999999999874 34333332     333445544 4566665667777777763221   1


Q ss_pred             hhccCChHHHHHHcccCChhhHHHHHHHHHHhhc-CCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhh
Q 006494          481 VGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSI-NQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEG  559 (643)
Q Consensus       481 i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~-~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~  559 (643)
                      ++ .+.+|.+..=.+-|++..+.+-..+|..+.. +|+--     .+++.-+..++.+++..-.-.|+..+..+..+   
T Consensus       104 ~v-~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~-----~~v~rdi~smltskd~~Dkl~aLnFi~alGen---  174 (253)
T 2db0_A          104 LV-KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLM-----ASIVRDFMSMLSSKNREDKLTALNFIEAMGEN---  174 (253)
T ss_dssp             HH-HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHH-----HHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTT---
T ss_pred             HH-HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHH-----HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcc---
Confidence            11 1355666666677899999999999998876 43322     34566788889877754455555555554443   


Q ss_pred             HHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 006494          560 RNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHM  636 (643)
Q Consensus       560 ~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l  636 (643)
                      ...-+ .-.+|.|..+|.+.++.+|..|+.+|.+++..++..+..+      ..-++-+.+.++-++.+...-|..+
T Consensus       175 ~~~yv-~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii------~~kl~e~~D~S~lv~~~V~egL~rl  244 (253)
T 2db0_A          175 SFKYV-NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVV------IKRLEELNDTSSLVNKTVKEGISRL  244 (253)
T ss_dssp             THHHH-GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHH------HHHHHHCCCSCHHHHHHHHHHHHHH
T ss_pred             Ccccc-CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHH------HHHHHHhcCcHHHHHHHHHHHHHHH
Confidence            22222 2579999999999999999999999999999998854432      2233334555666666665555443

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=97.04  E-value=0.011  Score=61.48  Aligned_cols=245  Identities=10%  Similarity=0.029  Sum_probs=149.9

Q ss_pred             HHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHH
Q 006494          362 EICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIA  441 (643)
Q Consensus       362 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~  441 (643)
                      .....++.+.+.+...+.-.--.+..+++..++.   +   -++..|.+=+.++++-++-.|+++|.++...+-..    
T Consensus        69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~---i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m~~----  138 (355)
T 3tjz_B           69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDV---I---IVTSSLTKDMTGKEDSYRGPAVRALCQITDSTMLQ----  138 (355)
T ss_dssp             HHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCG---G---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTTHH----
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHH---H---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHHHH----
Confidence            4455677888888888877777777887653331   1   25677888889999999999999999976443211    


Q ss_pred             hcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHH
Q 006494          442 REGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSR  521 (643)
Q Consensus       442 ~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~  521 (643)
                        ...+.+...|.+.++.+|..|+-+...|....  .+.+  .+.++.+-+++.+.++.+..+|+.+|+.++.+..  . 
T Consensus       139 --~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~--pe~v--~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~--~-  209 (355)
T 3tjz_B          139 --AIERYMKQAIVDKVPSVSSSALVSSLHLLKCS--FDVV--KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR--L-  209 (355)
T ss_dssp             --HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC--HHHH--HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH--H-
T ss_pred             --HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccC--HHHH--HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch--H-
Confidence              13445666677889999999998888876433  2222  2688999999999999999999999999986531  1 


Q ss_pred             HHhcCcHHHHHHHhccC---ChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCC
Q 006494          522 AIKAGIIPSLLKLLEDK---ALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNN  598 (643)
Q Consensus       522 iv~~G~v~~Lv~lL~~~---~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~  598 (643)
                           ++..|+..+...   ++-.+-..+.++..++...+..   .....+..+..+|++.++.+.-.|+.++..+...+
T Consensus       210 -----a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~---~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~  281 (355)
T 3tjz_B          210 -----AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS---RDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCS  281 (355)
T ss_dssp             -----HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--------------------CCCCCSSHHHHHHHHHHHTC-----
T ss_pred             -----HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh---hHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCC
Confidence                 445556665442   2222222233332332221001   12345667777788888999999999988876533


Q ss_pred             HHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494          599 SYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK  638 (643)
Q Consensus       599 ~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~  638 (643)
                      ...     -..++..|..++.+.++..|=.|...|..+..
T Consensus       282 ~~~-----~~~a~~~L~~fLss~d~niryvaLr~L~~l~~  316 (355)
T 3tjz_B          282 AKE-----LAPAVSVLQLFCSSPKAALRYAAVRTLNKVAM  316 (355)
T ss_dssp             -----------CCCTHHHHHHSSSSSSHHHHHHCC-----
T ss_pred             HHH-----HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence            221     13456777788888888888777776665543

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.00  E-value=0.00067  Score=53.52  Aligned_cols=47  Identities=15%  Similarity=0.389  Sum_probs=37.8

Q ss_pred             ccCccCcccccCCee-cCCcccccHHhHHHHHhcC-CCCCCCCCcccCC
Q 006494          273 FLCPVTLEIMTDPVI-VATGQTYERESIQRWLNSN-HKTCPKTGQILDH  319 (643)
Q Consensus       273 f~Cpi~~~~m~dPv~-~~~g~t~~r~~I~~w~~~~-~~~cP~~~~~l~~  319 (643)
                      -.|+||.+++..=.. ..|||.|...||.+||... ..+||.|+.+...
T Consensus        16 ~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~   64 (74)
T 2ct0_A           16 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH   64 (74)
T ss_dssp             CBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred             CcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence            469999999874332 2699999999999999853 3789999988753

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=96.76  E-value=0.008  Score=70.34  Aligned_cols=262  Identities=14%  Similarity=0.103  Sum_probs=172.3

Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChh----h
Q 006494          361 EEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDET----N  436 (643)
Q Consensus       361 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~----~  436 (643)
                      ..+..+++.++..+.+.+..++..+..+...+...+  ....+.+..|.+.+......  +.|+.++..|+....    .
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~   89 (986)
T 2iw3_A           14 KVLEELFQKLSVATADNRHEIASEVASFLNGNIIEH--DVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSV   89 (986)
T ss_dssp             HHHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTT
T ss_pred             HHHHHHHhhccccchhHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCc
Confidence            455567777776555666777777877764331111  11125667777877765333  888888888874332    2


Q ss_pred             HHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccc-cccccchhhccCChHHHHHHcccC-ChhhHHHHHHHHHHhhc
Q 006494          437 KRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSM-LDENRVMVGNLNGIPPLVNLLRYG-SIRGKKDAATALFNLSI  514 (643)
Q Consensus       437 k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~-~~~~k~~i~~~g~i~~Lv~lL~s~-~~~~k~~A~~aL~nLs~  514 (643)
                      -..++  +.++.++..+.+....+|..|..++..+.. .+.+  .+  ...+|.|+..|.+. ....|..|+.+|..|+.
T Consensus        90 e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~--a~--~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~  163 (986)
T 2iw3_A           90 EPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPV--AI--KALLPHLTNAIVETNKWQEKIAILAAFSAMVD  163 (986)
T ss_dssp             HHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGG--GH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred             ccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHH--HH--HHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence            12222  468888888877777888877777666642 1111  11  45678999888765 68999999999999986


Q ss_pred             CCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHh
Q 006494          515 NQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLEL  594 (643)
Q Consensus       515 ~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L  594 (643)
                      .....-...=...||.+.+.+.+..+++...|..++..+|..-+++..   ...+|.|++.+.+.+.  -..++..|..-
T Consensus       164 ~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~---~~~~~~~~~~~~~p~~--~~~~~~~l~~~  238 (986)
T 2iw3_A          164 AAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI---ERFIPSLIQCIADPTE--VPETVHLLGAT  238 (986)
T ss_dssp             HSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT---GGGHHHHHHHHHCTTH--HHHHHHHHTTC
T ss_pred             HhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch---hhhHHHHHHHhcChhh--hHHHHHHhhcC
Confidence            442222222256889999999888889999999999999886544422   2579999999976532  33445555433


Q ss_pred             ccC---CHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhhccCC
Q 006494          595 GLN---NSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSKREHI  642 (643)
Q Consensus       595 ~~~---~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~~~e~  642 (643)
                      ..-   ......     =.+|.|.+=+...+...+|+++-+..||++--+-
T Consensus       239 tfv~~v~~~~l~-----~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~  284 (986)
T 2iw3_A          239 TFVAEVTPATLS-----IMVPLLSRGLNERETGIKRKSAVIIDNMCKLVED  284 (986)
T ss_dssp             CCCSCCCHHHHH-----HHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCC
T ss_pred             eeEeeecchhHH-----HHHHHHHhhhccCcchhheeeEEEEcchhhhcCC
Confidence            321   111111     1366666777777889999999999999986543

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=96.64  E-value=0.0017  Score=48.99  Aligned_cols=48  Identities=21%  Similarity=0.426  Sum_probs=39.7

Q ss_pred             CcccCccCcccccCCeecCCc--c---cccHHhHHHHHh-cCCCCCCCCCcccC
Q 006494          271 HEFLCPVTLEIMTDPVIVATG--Q---TYERESIQRWLN-SNHKTCPKTGQILD  318 (643)
Q Consensus       271 ~~f~Cpi~~~~m~dPv~~~~g--~---t~~r~~I~~w~~-~~~~~cP~~~~~l~  318 (643)
                      ++-.|.||++-..+|.+.||.  +   .|-+.|+.+|+. .++.+||+|+.++.
T Consensus         5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence            445799999888888888864  2   799999999998 45788999998765

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=96.30  E-value=0.062  Score=53.70  Aligned_cols=186  Identities=12%  Similarity=0.113  Sum_probs=121.5

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHhhhhChhhH--HHHH-hh-CChHHHHHHhcCCCHHHHHHHHHHHHhcccCh----hhH
Q 006494          366 LIQNLSSSQLNIKRDSVMKIRMLSKENPDNR--ILIA-NN-GGIRPLVQLLSYPDSKIQEHTVTALLNLSLDE----TNK  437 (643)
Q Consensus       366 Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r--~~i~-~~-g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~----~~k  437 (643)
                      |-+.|.+.+|..|..|+..+..+....+...  .... .. ...+.+-+.+.+.+..++..++.+|..+...-    ..+
T Consensus        14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~   93 (278)
T 4ffb_C           14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN   93 (278)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence            5578999999999999999987764332211  1111 12 24556677888889999999999888765321    111


Q ss_pred             H--HHHhcCChHHHHHH-HccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhc
Q 006494          438 R--HIAREGAIPAIIEI-LQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSI  514 (643)
Q Consensus       438 ~--~i~~~g~i~~Lv~l-L~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~  514 (643)
                      .  ...-...++.|+.- |.++...++..+..++..+.......     ...++.++..+.+.++.++..++..|..+..
T Consensus        94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-----~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~  168 (278)
T 4ffb_C           94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-----TQSVELVIPFFEKKLPKLIAAAANCVYELMA  168 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-----HHHHHHHGGGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-----HHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence            1  12234467777765 66777888888888877765322111     1134666677788899999999998888754


Q ss_pred             C--CCc-hHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC
Q 006494          515 N--QSN-KSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH  556 (643)
Q Consensus       515 ~--~en-~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~  556 (643)
                      .  ... .....-..+++.+..+|.+.++.+.+.|..++..+-..
T Consensus       169 ~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~  213 (278)
T 4ffb_C          169 AFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV  213 (278)
T ss_dssp             HHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred             HhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence            2  111 11111123455677788889999999999999888775

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=96.25  E-value=0.018  Score=61.96  Aligned_cols=242  Identities=12%  Similarity=0.074  Sum_probs=155.0

Q ss_pred             HHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhh--HHHHHhhCChHHHHHHhcC-------C---CHHHHHHHHHHHHh
Q 006494          362 EICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDN--RILIANNGGIRPLVQLLSY-------P---DSKIQEHTVTALLN  429 (643)
Q Consensus       362 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~--r~~i~~~g~i~~Lv~lL~~-------~---~~~~~~~a~~~L~n  429 (643)
                      ....|+..|-+..|++|-.|+-.||.+.+.....  |....+....-.|+.+|.-       +   -..+++.|+.+|..
T Consensus       175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa  254 (800)
T 3oc3_A          175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR  254 (800)
T ss_dssp             TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence            6678889999999999999999999887654321  1100001222233333321       1   24678888888777


Q ss_pred             cccChhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhc-cCChHHHHHHcccCChhhHHHHHHH
Q 006494          430 LSLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGN-LNGIPPLVNLLRYGSIRGKKDAATA  508 (643)
Q Consensus       430 Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~-~g~i~~Lv~lL~s~~~~~k~~A~~a  508 (643)
                      + .+=...     ...+..++..+..+.+++|..+.-.|.++      +..+.. .++++.++.-|.+.+++++..|+.+
T Consensus       255 L-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL------~DLL~~Ld~Vv~aVL~GL~D~DDDVRAVAAet  322 (800)
T 3oc3_A          255 I-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYL------KEFVEDKDGLCRKLVSLLSSPDEDIKLLSAEL  322 (800)
T ss_dssp             H-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHT------GGGCCCHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             H-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHH------HHHHHHHHHHHHHHHhhcCCcccHHHHHHHHH
Confidence            6 432111     23344444445677899999888888888      222222 4667888888888899999999999


Q ss_pred             HHHhhcCCCchHHHHhcCcHHHHHHHhccC--ChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHH
Q 006494          509 LFNLSINQSNKSRAIKAGIIPSLLKLLEDK--ALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKEC  586 (643)
Q Consensus       509 L~nLs~~~en~~~iv~~G~v~~Lv~lL~~~--~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~  586 (643)
                      |.-++ .++....     ++..+-+.|.+-  -....-..+..|+.|++++..  .......+|.|..+++.....+|..
T Consensus       323 LiPIA-~p~~l~~-----LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LVPRL~PFLRHtITSVR~A  394 (800)
T 3oc3_A          323 LCHFP-ITDSLDL-----VLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERLKDIFPCFTSPVPEVRTS  394 (800)
T ss_dssp             HTTSC-CSSTHHH-----HHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGGGGTGGGGTCSSHHHHHH
T ss_pred             hhhhc-chhhHHH-----HHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHHHHHHhhhcCCcHHHHHH
Confidence            99888 2222222     233344444431  122345567777887777631  1122367999999999999999999


Q ss_pred             HHHHHHHhccCCHHHHHHHHHcCcHHHHH-HHHhhCCHHHHHHHHHHHH
Q 006494          587 ATSVLLELGLNNSYFILAALQYGVYEHLV-EITRCGTNRGQRKANSLLQ  634 (643)
Q Consensus       587 A~~~L~~L~~~~~~~~~~~~~~g~i~~L~-~ll~~g~~~~k~~A~~lL~  634 (643)
                      ++.+|..+.  ++         .++..+. .++-..++.+++.+..+-+
T Consensus       395 VL~TL~tfL--~~---------~~LRLIFQNILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          395 ILNMVKNLS--EE---------SIDFLVAEVVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             HHHHTTTCC--CH---------HHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHH--hh---------hHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            999998877  22         2333333 4667778888888877764

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=96.08  E-value=0.0011  Score=67.11  Aligned_cols=48  Identities=17%  Similarity=0.409  Sum_probs=38.5

Q ss_pred             CcccCccCcccccC----Cee----cCCcccccHHhHHHHHhcCC----------CCCCCCCcccC
Q 006494          271 HEFLCPVTLEIMTD----PVI----VATGQTYERESIQRWLNSNH----------KTCPKTGQILD  318 (643)
Q Consensus       271 ~~f~Cpi~~~~m~d----Pv~----~~~g~t~~r~~I~~w~~~~~----------~~cP~~~~~l~  318 (643)
                      ....|+||+..+.+    |..    ..|||.|...||.+||....          .+||.|+++++
T Consensus       307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs  372 (381)
T 3k1l_B          307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS  372 (381)
T ss_dssp             SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred             CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence            44579999999987    533    36999999999999997421          35999999876

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=96.02  E-value=0.87  Score=52.90  Aligned_cols=204  Identities=13%  Similarity=0.093  Sum_probs=132.5

Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHh-cCCCHHHHHHHHHHHHhcccChhhHH
Q 006494          360 IEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLL-SYPDSKIQEHTVTALLNLSLDETNKR  438 (643)
Q Consensus       360 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL-~~~~~~~~~~a~~~L~nLs~~~~~k~  438 (643)
                      ...+..|...|...+...+..|+..|..+.-. ..+..      ++..|+..+ ...+..++..++..|..+...     
T Consensus       471 eev~e~L~~~L~dd~~~~~~~AalALGli~vG-Tgn~~------ai~~LL~~~~e~~~e~vrR~aalgLGll~~g-----  538 (963)
T 4ady_A          471 IEVYEALKEVLYNDSATSGEAAALGMGLCMLG-TGKPE------AIHDMFTYSQETQHGNITRGLAVGLALINYG-----  538 (963)
T ss_dssp             HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT-CCCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTTT-----
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcc-cCCHH------HHHHHHHHHhccCcHHHHHHHHHHHHhhhCC-----
Confidence            34566666767665555555555555544211 11211      234444443 344566777777777654322     


Q ss_pred             HHHhcCChHHHHHHHcc-CCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccC-ChhhHHHHHHHHHHhhcCC
Q 006494          439 HIAREGAIPAIIEILQN-GTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYG-SIRGKKDAATALFNLSINQ  516 (643)
Q Consensus       439 ~i~~~g~i~~Lv~lL~~-~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~-~~~~k~~A~~aL~nLs~~~  516 (643)
                         +...++.+++.|.. .++-+|..++-++.--....      +...+|+.|++.+.++ +..++..|+.+|..+....
T Consensus       539 ---~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGT------Gn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~  609 (963)
T 4ady_A          539 ---RQELADDLITKMLASDESLLRYGGAFTIALAYAGT------GNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRD  609 (963)
T ss_dssp             ---CGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTS------CCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSS
T ss_pred             ---ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCC------CCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCC
Confidence               34467888888875 57778877666664332211      2234678788777554 6788899999998877644


Q ss_pred             CchHHHHhcCcHHHHHHHhc-cCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhc
Q 006494          517 SNKSRAIKAGIIPSLLKLLE-DKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELG  595 (643)
Q Consensus       517 en~~~iv~~G~v~~Lv~lL~-~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~  595 (643)
                      +        ..++.++++|. +.++.++..|..+|..++......      .++..|..++++.++.++.+|+.+|..+.
T Consensus       610 ~--------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~------~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig  675 (963)
T 4ady_A          610 Y--------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ------SAIDVLDPLTKDPVDFVRQAAMIALSMIL  675 (963)
T ss_dssp             C--------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHS
T ss_pred             H--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH------HHHHHHHHHccCCCHHHHHHHHHHHHHHh
Confidence            3        35677777665 478889999999999988754332      35667788888899999999999999988


Q ss_pred             cCC
Q 006494          596 LNN  598 (643)
Q Consensus       596 ~~~  598 (643)
                      .+.
T Consensus       676 ~gt  678 (963)
T 4ady_A          676 IQQ  678 (963)
T ss_dssp             TTC
T ss_pred             cCC
Confidence            764

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=96.01  E-value=0.0025  Score=52.47  Aligned_cols=45  Identities=9%  Similarity=0.121  Sum_probs=37.6

Q ss_pred             CccCcccccCCe-ecCCcccccHHhHHHHHhcCCCCCCCCCcccCC
Q 006494          275 CPVTLEIMTDPV-IVATGQTYERESIQRWLNSNHKTCPKTGQILDH  319 (643)
Q Consensus       275 Cpi~~~~m~dPv-~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~  319 (643)
                      ||+|.-....-. ++||+|.||..|+..|...+..+||.|+.++..
T Consensus         4 C~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r   49 (101)
T 3vk6_A            4 CDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR   49 (101)
T ss_dssp             CTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred             cCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence            777766555443 689999999999999999888999999998764

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=95.72  E-value=0.56  Score=45.65  Aligned_cols=230  Identities=16%  Similarity=0.206  Sum_probs=148.1

Q ss_pred             HHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHH-HhhCChHHHHH-------HhcCC-----CHHHHHHHHHHHH
Q 006494          362 EICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILI-ANNGGIRPLVQ-------LLSYP-----DSKIQEHTVTALL  428 (643)
Q Consensus       362 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i-~~~g~i~~Lv~-------lL~~~-----~~~~~~~a~~~L~  428 (643)
                      .+-.++..|..  ++.|..|+.+|..--...++--..+ ...|.+..|+.       .++.+     ...-..+|+..|-
T Consensus         4 ~i~qli~~L~~--p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQ   81 (268)
T 2fv2_A            4 KIYQWINELSS--PETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQ   81 (268)
T ss_dssp             HHHHHHHHTSS--TTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcC--chhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHH
Confidence            34555655654  3456777666654221112222222 12465655543       22221     1223456777777


Q ss_pred             hcccChhhHHHHHhcCChHHHHHHHccCC-----HHHHHHHHHHHHHcccccc--ccchhhccCChHHHHHHcccCChhh
Q 006494          429 NLSLDETNKRHIAREGAIPAIIEILQNGT-----NEARENSAAALFSLSMLDE--NRVMVGNLNGIPPLVNLLRYGSIRG  501 (643)
Q Consensus       429 nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~-----~~~~~~Aa~~L~~Ls~~~~--~k~~i~~~g~i~~Lv~lL~s~~~~~  501 (643)
                      -++.+++.|..+.+++..--|..+|...+     +-.|..+.+++..|...++  .-..+.+.+.||..+..+..|+.-.
T Consensus        82 cvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselS  161 (268)
T 2fv2_A           82 CVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELS  161 (268)
T ss_dssp             HHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHH
T ss_pred             HHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHH
Confidence            78899999999999887777778886543     4578899999999986554  3444556889999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCchHHH-------Hh-cCcHHHHHHHh-ccCChhhHHHHHHHHHHHhCChhhHHHHHhc--CcH-
Q 006494          502 KKDAATALFNLSINQSNKSRA-------IK-AGIIPSLLKLL-EDKALGMVDEALSILQLLASHPEGRNEIGRL--SFI-  569 (643)
Q Consensus       502 k~~A~~aL~nLs~~~en~~~i-------v~-~G~v~~Lv~lL-~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~--g~i-  569 (643)
                      |.-|..++..+..++..-..+       -. ..++..++.-+ .++++.+..+.+.+-..|+.++.+|+++...  ..+ 
T Consensus       162 KtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~LP~~Lr  241 (268)
T 2fv2_A          162 KTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLK  241 (268)
T ss_dssp             HHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHHSCGGGT
T ss_pred             HHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHhCcHHhh
Confidence            999999998876655443222       22 22344444444 3478889999999999999999999998652  111 


Q ss_pred             -HHHHHHHhcCChHHHHHHHHHHHHh
Q 006494          570 -ETLVEIIKNGTPKNKECATSVLLEL  594 (643)
Q Consensus       570 -~~Lv~lL~~~s~~~ke~A~~~L~~L  594 (643)
                       ..+..+++ +++..+.+-...+.++
T Consensus       242 d~tf~~~l~-~D~~~k~~l~qLl~n~  266 (268)
T 2fv2_A          242 DTTFAQVLK-DDTTTKRWLAQLVKNL  266 (268)
T ss_dssp             SSTTHHHHT-SCHHHHHHHHHHHHHS
T ss_pred             ChHHHHHHh-cCHHHHHHHHHHHHhc
Confidence             11223333 5677777766666655

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=95.41  E-value=0.076  Score=62.90  Aligned_cols=252  Identities=9%  Similarity=0.063  Sum_probs=139.3

Q ss_pred             HHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhc------CCCHHHHHHHHHHHHhcccChhhHHHHHhc-----C
Q 006494          376 NIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLS------YPDSKIQEHTVTALLNLSLDETNKRHIARE-----G  444 (643)
Q Consensus       376 ~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~------~~~~~~~~~a~~~L~nLs~~~~~k~~i~~~-----g  444 (643)
                      ..+..|...|..++....   ..+.. ..++.+-..+.      +.++..++.|+.++..++..-..+..-...     .
T Consensus       376 s~R~aa~~~L~~l~~~~~---~~v~~-~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~  451 (960)
T 1wa5_C          376 TRRRACTDFLKELKEKNE---VLVTN-IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLN  451 (960)
T ss_dssp             CHHHHHHHHHHHHHHHCH---HHHHH-HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCC
T ss_pred             CcHHHHHHHHHHHHHHcc---hhHHH-HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCccccccccc
Confidence            456667777777775433   11111 12334444454      567889999999998886431100000000     1


Q ss_pred             ChH----HHHHHHccC---CHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCC
Q 006494          445 AIP----AIIEILQNG---TNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQS  517 (643)
Q Consensus       445 ~i~----~Lv~lL~~~---~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~e  517 (643)
                      ..+    .++..|.+.   .+.+|..|++++..++..- .+..  -...++.++..|.+.+..++..|+.||.+++...+
T Consensus       452 l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~~--l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~  528 (960)
T 1wa5_C          452 VVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKAQ--LIELMPILATFLQTDEYVVYTYAAITIEKILTIRE  528 (960)
T ss_dssp             HHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHHH--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBS
T ss_pred             HHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHHH--HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhccc
Confidence            112    223334555   7889999999999987532 1111  13467888888888788999999999999987422


Q ss_pred             ---------chHHHHh--cCcHHHHHHHhccCC---h--hhHHHHHHHHHHHhCC--hhhHHHHHhcCcHHHHHHHHhc-
Q 006494          518 ---------NKSRAIK--AGIIPSLLKLLEDKA---L--GMVDEALSILQLLASH--PEGRNEIGRLSFIETLVEIIKN-  578 (643)
Q Consensus       518 ---------n~~~iv~--~G~v~~Lv~lL~~~~---~--~~~~~Al~iL~nLa~~--~~~~~~i~~~g~i~~Lv~lL~~-  578 (643)
                               .+..+..  ...++.|+.++....   .  ...+.++.+|..++..  .+... .. ...++.|...+.. 
T Consensus       529 ~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p-~~-~~l~~~L~~~l~~~  606 (960)
T 1wa5_C          529 SNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQP-LF-PQLLAQFIEIVTIM  606 (960)
T ss_dssp             CSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGG-GH-HHHHHHHHHHHHHH
T ss_pred             ccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhh-HH-HHHHHHHHHHHHHH
Confidence                     2332321  335555566665431   1  1234556666555442  11111 11 1244555555532 


Q ss_pred             ----CChHHHHHHHHHHHHhccC-CHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhh
Q 006494          579 ----GTPKNKECATSVLLELGLN-NSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMS  637 (643)
Q Consensus       579 ----~s~~~ke~A~~~L~~L~~~-~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~  637 (643)
                          .++..+..++.+|..++.. +++.... ....++|.+..++.+........+..++..+.
T Consensus       607 ~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~-~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~  669 (960)
T 1wa5_C          607 AKNPSNPRFTHYTFESIGAILNYTQRQNLPL-LVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVV  669 (960)
T ss_dssp             TTSCCCHHHHHHHHHHHHHHHHTSCGGGHHH-HHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred             HhCCCCcHHHHHHHHHHHHHHhcCCcchHHH-HHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHH
Confidence                2445566677788777765 3333332 33457888888887665555555666555443

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=95.13  E-value=0.18  Score=49.16  Aligned_cols=135  Identities=21%  Similarity=0.211  Sum_probs=100.4

Q ss_pred             hhhHHHHHHHHHHhhcCCCc----hHHHHh-cCcHHHHHHHhccC-----Ch-------hhHHHHHHHHHHHhCChhhHH
Q 006494          499 IRGKKDAATALFNLSINQSN----KSRAIK-AGIIPSLLKLLEDK-----AL-------GMVDEALSILQLLASHPEGRN  561 (643)
Q Consensus       499 ~~~k~~A~~aL~nLs~~~en----~~~iv~-~G~v~~Lv~lL~~~-----~~-------~~~~~Al~iL~nLa~~~~~~~  561 (643)
                      ++.++.|   |.+|+...++    ...+.. -|.+..|++=+-+-     .+       .-+-.|++.|-.+|+|++.|.
T Consensus        15 p~~Re~A---L~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAshpetr~   91 (268)
T 2fv2_A           15 PETRENA---LLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRS   91 (268)
T ss_dssp             TTTHHHH---HHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHCTTTHH
T ss_pred             chhHHHH---HHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcCcchhh
Confidence            3445554   5566654443    333444 57777765544331     11       124568889999999999999


Q ss_pred             HHHhcCcHHHHHHHHhcCC-----hHHHHHHHHHHHHhccCC-HHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHH
Q 006494          562 EIGRLSFIETLVEIIKNGT-----PKNKECATSVLLELGLNN-SYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQH  635 (643)
Q Consensus       562 ~i~~~g~i~~Lv~lL~~~s-----~~~ke~A~~~L~~L~~~~-~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~  635 (643)
                      .+.++...-.|-.+|...+     +..|-.+++++..|...+ ++.....++.+++|..++.+..|++-.|..|..++..
T Consensus        92 ~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqK  171 (268)
T 2fv2_A           92 AFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQK  171 (268)
T ss_dssp             HHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            9999998888899998755     456778899999988754 5666667889999999999999999999999999886


Q ss_pred             h
Q 006494          636 M  636 (643)
Q Consensus       636 l  636 (643)
                      +
T Consensus       172 I  172 (268)
T 2fv2_A          172 I  172 (268)
T ss_dssp             H
T ss_pred             H
Confidence            5

>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=94.92  E-value=0.016  Score=59.57  Aligned_cols=64  Identities=13%  Similarity=0.166  Sum_probs=53.3

Q ss_pred             CcccCccCcccccCCee-cCCccc--ccHHhHHHHHh-cCCCCCCCCCcccCCCCCCchhhhHHHHHH
Q 006494          271 HEFLCPVTLEIMTDPVI-VATGQT--YERESIQRWLN-SNHKTCPKTGQILDHLSLAPNYALRNLIVQ  334 (643)
Q Consensus       271 ~~f~Cpi~~~~m~dPv~-~~~g~t--~~r~~I~~w~~-~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~  334 (643)
                      -.+.|||++..|..|+- ..|.|.  ||...+..... .+.+.||+|++.+...+|..+..+...+..
T Consensus       248 vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~~  315 (371)
T 3i2d_A          248 MSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQN  315 (371)
T ss_dssp             EESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHTT
T ss_pred             EeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHHh
Confidence            45899999999999997 579886  99988877765 456889999999999999988888776543

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=94.71  E-value=0.37  Score=47.89  Aligned_cols=186  Identities=13%  Similarity=0.070  Sum_probs=119.6

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHhcccCh---hhHHHHH-h-cCChHHHHHHHccCCHHHHHHHHHHHHHcccccc----cc
Q 006494          408 LVQLLSYPDSKIQEHTVTALLNLSLDE---TNKRHIA-R-EGAIPAIIEILQNGTNEARENSAAALFSLSMLDE----NR  478 (643)
Q Consensus       408 Lv~lL~~~~~~~~~~a~~~L~nLs~~~---~~k~~i~-~-~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~----~k  478 (643)
                      |-.-|.+.+|..+..|+..|..+....   ....... . ....+.+-..+.+.+..+...++.++..+...-.    .+
T Consensus        14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~   93 (278)
T 4ffb_C           14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN   93 (278)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence            556788999999999999888764322   1112222 1 2345666678888888898888888887753211    11


Q ss_pred             chh--hccCChHHHHH-HcccCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhC
Q 006494          479 VMV--GNLNGIPPLVN-LLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLAS  555 (643)
Q Consensus       479 ~~i--~~~g~i~~Lv~-lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~  555 (643)
                      ...  .-...++.|+. .+.+....++..|..++..++........     +++.++..+.+.++.++..++.+|..+..
T Consensus        94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~-----~~e~l~~~l~~Knpkv~~~~l~~l~~~l~  168 (278)
T 4ffb_C           94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ-----SVELVIPFFEKKLPKLIAAAANCVYELMA  168 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH-----HHHHHGGGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH-----HHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence            111  11345677775 36777888888888888777643322222     23556667777899999999999988765


Q ss_pred             Chhh----HHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCH
Q 006494          556 HPEG----RNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNS  599 (643)
Q Consensus       556 ~~~~----~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~  599 (643)
                      .-..    ....+ ..+++.+..++.+.++.+|..|..++..+...-+
T Consensus       169 ~fg~~~~~~k~~l-~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G  215 (278)
T 4ffb_C          169 AFGLTNVNVQTFL-PELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTG  215 (278)
T ss_dssp             HHTTTTCCHHHHH-HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC--
T ss_pred             HhCCCcCCchhHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence            3111    11111 1245567778888999999999999998887644

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=94.59  E-value=0.27  Score=48.63  Aligned_cols=179  Identities=13%  Similarity=0.144  Sum_probs=116.2

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhC-ChHHHHHHhcCCCHHHHHHHHHHHHhccc---ChhhHHHHH
Q 006494          366 LIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNG-GIRPLVQLLSYPDSKIQEHTVTALLNLSL---DETNKRHIA  441 (643)
Q Consensus       366 Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g-~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~---~~~~k~~i~  441 (643)
                      +...|-+.+...+.+|+..|......+++  ..+...+ .++.+.--+.+.+..+...++.+|..+..   ..+.+-.-.
T Consensus        51 ~~~~lfs~d~k~~~~ale~L~~~l~~~~~--~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~  128 (266)
T 2of3_A           51 LMSQLFHKDFKQHLAALDSLVRLADTSPR--SLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQE  128 (266)
T ss_dssp             HHHHHTCSCHHHHHHHHHHHHHHHHHCHH--HHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhhhChH--HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence            44455667888888898888776544332  2222211 23333322335678888888777766531   110000000


Q ss_pred             h-cCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchH
Q 006494          442 R-EGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKS  520 (643)
Q Consensus       442 ~-~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~  520 (643)
                      + .-.+|.|+.-+......+|..+-.++..+...      ......++.++.-+++.+.+.+..++..+..+-...+.. 
T Consensus       129 ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v------~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~-  201 (266)
T 2of3_A          129 EVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV------VGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS-  201 (266)
T ss_dssp             HHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH------HCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG-
T ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC-
Confidence            1 22678898888777788898888877766521      112346677888889999999999999888886533322 


Q ss_pred             HHHhcCcH---HHHHHHhccCChhhHHHHHHHHHHHhCC
Q 006494          521 RAIKAGII---PSLLKLLEDKALGMVDEALSILQLLASH  556 (643)
Q Consensus       521 ~iv~~G~v---~~Lv~lL~~~~~~~~~~Al~iL~nLa~~  556 (643)
                         ...++   +.+..++.+.+..+.+.|+.++..+-.+
T Consensus       202 ---~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~  237 (266)
T 2of3_A          202 ---PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKF  237 (266)
T ss_dssp             ---GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred             ---ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence               24478   9999999999999999999988866554

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=94.42  E-value=0.43  Score=48.28  Aligned_cols=172  Identities=14%  Similarity=0.128  Sum_probs=101.4

Q ss_pred             HHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHH----HHHHhcC-CCHHHHHHHHHHHHhcccChhh
Q 006494          362 EICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRP----LVQLLSY-PDSKIQEHTVTALLNLSLDETN  436 (643)
Q Consensus       362 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~----Lv~lL~~-~~~~~~~~a~~~L~nLs~~~~~  436 (643)
                      .+..+.+.++- ..+.+.-++..+|.+.. ++.....+.+.+.-..    +...+.. ..+..+-.+++++.|+..++..
T Consensus       104 ~l~~l~kil~W-P~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g  181 (304)
T 3ebb_A          104 QLQILWKAINC-PEDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAG  181 (304)
T ss_dssp             HHHHHHHHHTS-CTTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHH
T ss_pred             HHHHHHHHHcC-CHHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchh
Confidence            44444444422 33556777777777663 4544445543322222    3333332 3456688899999999999998


Q ss_pred             HHHHHhc--CChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhc-cCChHHHHHHccc-CChhhHHHHHHHHHHh
Q 006494          437 KRHIARE--GAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGN-LNGIPPLVNLLRY-GSIRGKKDAATALFNL  512 (643)
Q Consensus       437 k~~i~~~--g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~-~g~i~~Lv~lL~s-~~~~~k~~A~~aL~nL  512 (643)
                      +..+...  ..++.+...+.+.+..++..++.+++|++.........-+ ...+..+..++.. .+.+....++.||.+|
T Consensus       182 ~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL  261 (304)
T 3ebb_A          182 QKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTL  261 (304)
T ss_dssp             HHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence            8887742  2344444444456788999999999999853221111111 1233444555543 4778899999999999


Q ss_pred             hcCCCchHHHHh-cCcHHHHHHHh
Q 006494          513 SINQSNKSRAIK-AGIIPSLLKLL  535 (643)
Q Consensus       513 s~~~en~~~iv~-~G~v~~Lv~lL  535 (643)
                      ...++....+.+ .|+-..+-++.
T Consensus       262 ~~~~~~~~~lak~l~~~~~v~~~~  285 (304)
T 3ebb_A          262 ISDDSNAVQLAKSLGVDSQIKKYS  285 (304)
T ss_dssp             HTTCHHHHHHHHHTTHHHHGGGGG
T ss_pred             HhCChhHHHHHHHcCHHHHHHHHH
Confidence            976555444444 34444333333

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=94.14  E-value=0.3  Score=49.49  Aligned_cols=136  Identities=9%  Similarity=0.025  Sum_probs=94.0

Q ss_pred             ChhhHHHHHHHHHHhhcCCCchHHHHhc--CcHHHHHHHhccCChhhHHHHHHHHHHHhCChh---hHHHHHhcCcHHHH
Q 006494          498 SIRGKKDAATALFNLSINQSNKSRAIKA--GIIPSLLKLLEDKALGMVDEALSILQLLASHPE---GRNEIGRLSFIETL  572 (643)
Q Consensus       498 ~~~~k~~A~~aL~nLs~~~en~~~iv~~--G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~---~~~~i~~~g~i~~L  572 (643)
                      .+..+..++.++.|+-.++..+..+...  .+++.+...+.+.+..++..+..++.|++....   ..+.  ...++..+
T Consensus       161 ~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~--~~~ll~~l  238 (304)
T 3ebb_A          161 KPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEG--KAQCLSLI  238 (304)
T ss_dssp             CHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHH--HHHHHHHH
T ss_pred             ChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchH--HHHHHHHH
Confidence            4566788999999999988888877752  344444444444677888888999999997421   1111  11234445


Q ss_pred             HHHHhc-CChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhh-CCHHHHHHHHHHHHH
Q 006494          573 VEIIKN-GTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRC-GTNRGQRKANSLLQH  635 (643)
Q Consensus       573 v~lL~~-~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~-g~~~~k~~A~~lL~~  635 (643)
                      ..++.. .+.+....++.+|.+|...+++....+...|+...+-.+... ..+++.+.|..+|..
T Consensus       239 ~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~~~  303 (304)
T 3ebb_A          239 STILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFILNL  303 (304)
T ss_dssp             HHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHHTT
T ss_pred             HHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHHHh
Confidence            555544 567888888999999998887766666667777776666655 467888888888764

>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B

Probab=94.02  E-value=0.035  Score=56.96  Aligned_cols=65  Identities=14%  Similarity=0.186  Sum_probs=54.0

Q ss_pred             CCcccCccCcccccCCee-cCCccc--ccHHhHHHHHh-cCCCCCCCCCcccCCCCCCchhhhHHHHHH
Q 006494          270 PHEFLCPVTLEIMTDPVI-VATGQT--YERESIQRWLN-SNHKTCPKTGQILDHLSLAPNYALRNLIVQ  334 (643)
Q Consensus       270 p~~f~Cpi~~~~m~dPv~-~~~g~t--~~r~~I~~w~~-~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~  334 (643)
                      .-.+.|||+...|+.|+- ..|.|.  ||...+-.+.. .+.+.||+|++.+...+|.-+..+...+..
T Consensus       213 ~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~~  281 (360)
T 4fo9_A          213 RVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILND  281 (360)
T ss_dssp             EEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHTT
T ss_pred             EEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHHh
Confidence            446899999999999997 579886  99998888776 456889999999998888888887776643

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=93.39  E-value=1.8  Score=41.76  Aligned_cols=162  Identities=19%  Similarity=0.260  Sum_probs=101.6

Q ss_pred             HHHHHHHHhhhhChhhH-HHHHhhCChHHHHHHhcC----C-------CHHHHHHHHHHHHhcccChhhHHHHH-hcCCh
Q 006494          380 DSVMKIRMLSKENPDNR-ILIANNGGIRPLVQLLSY----P-------DSKIQEHTVTALLNLSLDETNKRHIA-REGAI  446 (643)
Q Consensus       380 ~Al~~L~~La~~~~~~r-~~i~~~g~i~~Lv~lL~~----~-------~~~~~~~a~~~L~nLs~~~~~k~~i~-~~g~i  446 (643)
                      +-+..|+...+.++... ..+ ..+|+..|+..|..    +       +.+.+..++.+|..+..+..+...+. ..+++
T Consensus        20 ~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i   98 (233)
T 2f31_A           20 SCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGI   98 (233)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHH
T ss_pred             HHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHH
Confidence            34445544333443332 223 46777778777753    1       34667788899988887777777666 56789


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHcccccc--c-cchh----------hccCChHHHHHHcccC-ChhhHHHHHHHHHHh
Q 006494          447 PAIIEILQNGTNEARENSAAALFSLSMLDE--N-RVMV----------GNLNGIPPLVNLLRYG-SIRGKKDAATALFNL  512 (643)
Q Consensus       447 ~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~--~-k~~i----------~~~g~i~~Lv~lL~s~-~~~~k~~A~~aL~nL  512 (643)
                      ..|+..|.+..+.++..+.-+|..++..++  . ...+          .+..-+..+++.+++. +.+.+..++..+-.+
T Consensus        99 ~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~l  178 (233)
T 2f31_A           99 LLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINAL  178 (233)
T ss_dssp             HHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence            999999988899999999888888876543  3 2222          2234677888888754 455555555555556


Q ss_pred             hcCCCc-------hHHHHhcCcHHHHHHHhccCChhh
Q 006494          513 SINQSN-------KSRAIKAGIIPSLLKLLEDKALGM  542 (643)
Q Consensus       513 s~~~en-------~~~iv~~G~v~~Lv~lL~~~~~~~  542 (643)
                      ...+++       |..+...|..+.+-++=...++.+
T Consensus       179 i~~~~dl~~R~~lR~ef~~~Gl~~il~~l~~~~~~~L  215 (233)
T 2f31_A          179 ITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDM  215 (233)
T ss_dssp             HTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHCCCHHH
T ss_pred             HCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCCHHH
Confidence            666654       445556776655544433344443

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=93.30  E-value=1.3  Score=44.96  Aligned_cols=198  Identities=15%  Similarity=0.129  Sum_probs=145.2

Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhh--CChHHHHHHhc-CCCHHHHHHHHHHHHhcccChhhH
Q 006494          361 EEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANN--GGIRPLVQLLS-YPDSKIQEHTVTALLNLSLDETNK  437 (643)
Q Consensus       361 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~--g~i~~Lv~lL~-~~~~~~~~~a~~~L~nLs~~~~~k  437 (643)
                      +.+..|+..|..-+.+.+..+.....++.+.....+-..++.  .--+.|..++. ..++++--.+-..|.....++...
T Consensus        78 dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLRecir~e~la  157 (341)
T 1upk_A           78 GLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLA  157 (341)
T ss_dssp             SHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHTSHHHH
T ss_pred             CHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHHHHHhHHHH
Confidence            467788888888888888888888888877665544332220  11222222222 224566666777787777888888


Q ss_pred             HHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccc-cccchhhc---cCChHHHHHHcccCChhhHHHHHHHHHHhh
Q 006494          438 RHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLD-ENRVMVGN---LNGIPPLVNLLRYGSIRGKKDAATALFNLS  513 (643)
Q Consensus       438 ~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~---~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs  513 (643)
                      ..+...+.+-.+.+.+..++-++..-|.+++..|-..+ ........   ...+...-.+|.+++--+++.++..|..|.
T Consensus       158 ~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelL  237 (341)
T 1upk_A          158 KIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELL  237 (341)
T ss_dssp             HHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHH
Confidence            88887778889999999999999888999888774322 22222222   235677888999999999999999999999


Q ss_pred             cCCCchHHHHh----cCcHHHHHHHhccCChhhHHHHHHHHHHHhCChh
Q 006494          514 INQSNKSRAIK----AGIIPSLLKLLEDKALGMVDEALSILQLLASHPE  558 (643)
Q Consensus       514 ~~~en~~~iv~----~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~  558 (643)
                      .++.|-.-|..    ..-+..+..+|++.+..++-+|..+..-.+.+|.
T Consensus       238 ldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~  286 (341)
T 1upk_A          238 LDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPN  286 (341)
T ss_dssp             HSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSS
T ss_pred             hCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCC
Confidence            99998766654    4568888999999999999999999998888754

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=92.45  E-value=4.8  Score=41.96  Aligned_cols=161  Identities=17%  Similarity=0.256  Sum_probs=105.4

Q ss_pred             HHHHHHHHhhhhChhhH-HHHHhhCChHHHHHHhcC-----------CCHHHHHHHHHHHHhcccChhhHHHHH-hcCCh
Q 006494          380 DSVMKIRMLSKENPDNR-ILIANNGGIRPLVQLLSY-----------PDSKIQEHTVTALLNLSLDETNKRHIA-REGAI  446 (643)
Q Consensus       380 ~Al~~L~~La~~~~~~r-~~i~~~g~i~~Lv~lL~~-----------~~~~~~~~a~~~L~nLs~~~~~k~~i~-~~g~i  446 (643)
                      +.+..|+.-.+.++... ..+. .+|+..|+.+|..           .+...+..++.+|..+..+..+...+. ...++
T Consensus        86 ~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i  164 (383)
T 3eg5_B           86 SCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGI  164 (383)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHH
T ss_pred             HHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHH
Confidence            34555554333443332 2333 6678888888742           245778888999998887777777666 56789


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHcccccc--c-cch----------hhccCChHHHHHHcccC-ChhhHHHHHHHHHHh
Q 006494          447 PAIIEILQNGTNEARENSAAALFSLSMLDE--N-RVM----------VGNLNGIPPLVNLLRYG-SIRGKKDAATALFNL  512 (643)
Q Consensus       447 ~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~--~-k~~----------i~~~g~i~~Lv~lL~s~-~~~~k~~A~~aL~nL  512 (643)
                      ..|+..|.+..+.++..+.-+|..++..++  + ...          .++..-+..++..|+++ +.+.+..++..+-.+
T Consensus       165 ~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~l  244 (383)
T 3eg5_B          165 LLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINAL  244 (383)
T ss_dssp             HHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHH
Confidence            999999998899999999999888876553  2 222          23345678899999874 566666555555556


Q ss_pred             hcCCCc-------hHHHHhcCcHHHHHHHhcc-CChhh
Q 006494          513 SINQSN-------KSRAIKAGIIPSLLKLLED-KALGM  542 (643)
Q Consensus       513 s~~~en-------~~~iv~~G~v~~Lv~lL~~-~~~~~  542 (643)
                      ...+++       |..+...|..+.+-+ |.. .++.+
T Consensus       245 i~~~~dl~~R~~lR~ef~~~Gl~~il~~-lr~~~~~~L  281 (383)
T 3eg5_B          245 ITPAEELDFRVHIRSELMRLGLHQVLQE-LREIENEDM  281 (383)
T ss_dssp             HTTCCCHHHHHHHHHHHHHTTHHHHHHH-HTTSCCHHH
T ss_pred             HcCCCCHHHHHHHHHHHHHCChHHHHHH-HhcCCChhH
Confidence            665554       445556776666655 554 44433

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=92.09  E-value=0.059  Score=44.98  Aligned_cols=34  Identities=21%  Similarity=0.253  Sum_probs=29.4

Q ss_pred             CcccCccCcc-cccCCee--cCCcccccHHhHHHHHh
Q 006494          271 HEFLCPVTLE-IMTDPVI--VATGQTYERESIQRWLN  304 (643)
Q Consensus       271 ~~f~Cpi~~~-~m~dPv~--~~~g~t~~r~~I~~w~~  304 (643)
                      ++..|+||.+ ...+||.  +.||++||+.|++.|..
T Consensus         2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~   38 (101)
T 2jun_A            2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP   38 (101)
T ss_dssp             CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred             CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence            4688999996 5899999  89999999999998443

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=91.80  E-value=0.26  Score=53.31  Aligned_cols=186  Identities=14%  Similarity=0.118  Sum_probs=120.2

Q ss_pred             HHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHHHHcc
Q 006494          376 NIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQN  455 (643)
Q Consensus       376 ~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~  455 (643)
                      .+|..++..|..+ ++-+..      ...+..++..+..+.|+++-.++-.|..+  .+-...   -.+.++.++.-|.+
T Consensus       243 PVRETaAQtLGaL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL--~DLL~~---Ld~Vv~aVL~GL~D  310 (800)
T 3oc3_A          243 PVRDAAAYLLSRI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYL--KEFVED---KDGLCRKLVSLLSS  310 (800)
T ss_dssp             HHHHHHHHHHHHH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT--GGGCCC---HHHHHHHHHHHTTC
T ss_pred             ehHHHHHHHHHHH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHH--HHHHHH---HHHHHHHHHhhcCC
Confidence            4677777777777 543332      33455555666788999999999999888  110000   24567788888888


Q ss_pred             CCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccC-C-hhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHH
Q 006494          456 GTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYG-S-IRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLK  533 (643)
Q Consensus       456 ~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~-~-~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~  533 (643)
                      .+.+++..||.+|.-++. .   ..+  ...+..|.+.|.+- + .......+..|..|++.+.+.  ......+|.|..
T Consensus       311 ~DDDVRAVAAetLiPIA~-p---~~l--~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a--~~dp~LVPRL~P  382 (800)
T 3oc3_A          311 PDEDIKLLSAELLCHFPI-T---DSL--DLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL--SIPPERLKDIFP  382 (800)
T ss_dssp             SSHHHHHHHHHHHTTSCC-S---STH--HHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC--CCCSGGGGGTGG
T ss_pred             cccHHHHHHHHHhhhhcc-h---hhH--HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc--ccChHHHHHHHh
Confidence            999999999999988871 1   000  12344555555442 2 234445566777777766421  112478888999


Q ss_pred             HhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHH-HHhcCChHHHHHHHHHH
Q 006494          534 LLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVE-IIKNGTPKNKECATSVL  591 (643)
Q Consensus       534 lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~-lL~~~s~~~ke~A~~~L  591 (643)
                      +|.+.-..+...++.+|..+.          ...++..+.+ +|-...+++++.+..+.
T Consensus       383 FLRHtITSVR~AVL~TL~tfL----------~~~~LRLIFQNILLE~neeIl~lS~~VW  431 (800)
T 3oc3_A          383 CFTSPVPEVRTSILNMVKNLS----------EESIDFLVAEVVLIEEKDEIREMAIKLL  431 (800)
T ss_dssp             GGTCSSHHHHHHHHHHTTTCC----------CHHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred             hhcCCcHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence            999888889999999887777          1123443333 45567777777776665

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=91.37  E-value=1.8  Score=42.69  Aligned_cols=183  Identities=14%  Similarity=0.043  Sum_probs=112.4

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHHhc--CChHHHHHHHccCCHHHHHHHHHHHHHcc---ccccccchh
Q 006494          407 PLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIARE--GAIPAIIEILQNGTNEARENSAAALFSLS---MLDENRVMV  481 (643)
Q Consensus       407 ~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~~~--g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls---~~~~~k~~i  481 (643)
                      .+...|-+.|+.-+..++..|....  +.+...+...  ..++.+.-.+.+.+..+...+..+|..+.   ...+++-.-
T Consensus        50 ~~~~~lfs~d~k~~~~ale~L~~~l--~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~  127 (266)
T 2of3_A           50 SLMSQLFHKDFKQHLAALDSLVRLA--DTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQ  127 (266)
T ss_dssp             HHHHHHTCSCHHHHHHHHHHHHHHH--HHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCH
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHh--hhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchH
Confidence            3445555667777777777666532  1122222211  12222222233556666555555555542   112222222


Q ss_pred             hc-cCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhH
Q 006494          482 GN-LNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGR  560 (643)
Q Consensus       482 ~~-~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~  560 (643)
                      .+ .-.+|.|+.-+.+....++..+-.++..++..      .--..+++.+++-+.+.+....++++..+..+-......
T Consensus       128 ~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v------~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~  201 (266)
T 2of3_A          128 EEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV------VGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS  201 (266)
T ss_dssp             HHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH------HCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG
T ss_pred             HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC
Confidence            22 23678898888777778888777777666531      111335667788888889999999999999887653222


Q ss_pred             HHHHhcCcH---HHHHHHHhcCChHHHHHHHHHHHHhccCCHHH
Q 006494          561 NEIGRLSFI---ETLVEIIKNGTPKNKECATSVLLELGLNNSYF  601 (643)
Q Consensus       561 ~~i~~~g~i---~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~  601 (643)
                          ...++   +.+..++.+.+..+|..|+.++..+...-++.
T Consensus       202 ----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~  241 (266)
T 2of3_A          202 ----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQ  241 (266)
T ss_dssp             ----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTH
T ss_pred             ----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH
Confidence                23468   99999999999999999999998877654433

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=91.28  E-value=2.3  Score=50.14  Aligned_cols=218  Identities=8%  Similarity=0.066  Sum_probs=122.0

Q ss_pred             CCCHHHHHHHHHHHHHhhhhChhhHHHHH---h-hCChH----HHHHHhcCC---CHHHHHHHHHHHHhcccChhhHHHH
Q 006494          372 SSQLNIKRDSVMKIRMLSKENPDNRILIA---N-NGGIR----PLVQLLSYP---DSKIQEHTVTALLNLSLDETNKRHI  440 (643)
Q Consensus       372 s~~~~~~~~Al~~L~~La~~~~~~r~~i~---~-~g~i~----~Lv~lL~~~---~~~~~~~a~~~L~nLs~~~~~k~~i  440 (643)
                      +.++..+..|+..+..++.........+.   . ....+    .++..|.++   .+-++..|+.+|..++..- .+.. 
T Consensus       416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~~-  493 (960)
T 1wa5_C          416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKAQ-  493 (960)
T ss_dssp             --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHHH-
T ss_pred             chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHHH-
Confidence            45777888888988888742210000000   0 01112    233344555   7889999999999887531 1221 


Q ss_pred             HhcCChHHHHHHHccCCHHHHHHHHHHHHHcccccc---------ccchhhc--cCChHHHHHHcccCC---h--hhHHH
Q 006494          441 AREGAIPAIIEILQNGTNEARENSAAALFSLSMLDE---------NRVMVGN--LNGIPPLVNLLRYGS---I--RGKKD  504 (643)
Q Consensus       441 ~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~---------~k~~i~~--~g~i~~Lv~lL~s~~---~--~~k~~  504 (643)
                       -...++.++..|.+.+..++..|+.+|.+++...+         .+..+..  ...++.|+.++....   .  .....
T Consensus       494 -l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~  572 (960)
T 1wa5_C          494 -LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEF  572 (960)
T ss_dssp             -HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHH
T ss_pred             -HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHH
Confidence             22357788888888789999999999999875321         2333433  245566677776641   1  12345


Q ss_pred             HHHHHHHhhc-CCCchHHHHhcCcHHHHHHHhcc-----CChhhHHHHHHHHHHHhCC--hhhHHHHHhcCcHHHHHHHH
Q 006494          505 AATALFNLSI-NQSNKSRAIKAGIIPSLLKLLED-----KALGMVDEALSILQLLASH--PEGRNEIGRLSFIETLVEII  576 (643)
Q Consensus       505 A~~aL~nLs~-~~en~~~iv~~G~v~~Lv~lL~~-----~~~~~~~~Al~iL~nLa~~--~~~~~~i~~~g~i~~Lv~lL  576 (643)
                      ++.+|..++. ..+.-..... ..++.|+..+..     .++.....++.+|..++..  ++....+. ...+|.+..+|
T Consensus       573 l~~al~~vv~~~~~~~~p~~~-~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~-~~~~p~~~~iL  650 (960)
T 1wa5_C          573 LMRSIFRVLQTSEDSIQPLFP-QLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLV-DSMMPTFLTVF  650 (960)
T ss_dssp             HHHHHHHHHHHHTTTTGGGHH-HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHH-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHH-HHHHHHHHHHH
Confidence            5666666543 2222111111 244555555532     2445566677777777764  33333332 35678888888


Q ss_pred             hcCChHHHHHHHHHHHHh
Q 006494          577 KNGTPKNKECATSVLLEL  594 (643)
Q Consensus       577 ~~~s~~~ke~A~~~L~~L  594 (643)
                      ........+.+..++..+
T Consensus       651 ~~~~~~~~~~~~~i~~~l  668 (960)
T 1wa5_C          651 SEDIQEFIPYVFQIIAFV  668 (960)
T ss_dssp             HTTCTTTHHHHHHHHHHH
T ss_pred             HhhhHhhHHHHHHHHHHH
Confidence            765545555555555444

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=90.93  E-value=0.17  Score=49.26  Aligned_cols=49  Identities=14%  Similarity=0.354  Sum_probs=38.3

Q ss_pred             cccCccCcccccCCeec-CCcccccHHhHHHHHhcC-CCCCCCCCcccCCC
Q 006494          272 EFLCPVTLEIMTDPVIV-ATGQTYERESIQRWLNSN-HKTCPKTGQILDHL  320 (643)
Q Consensus       272 ~f~Cpi~~~~m~dPv~~-~~g~t~~r~~I~~w~~~~-~~~cP~~~~~l~~~  320 (643)
                      -..|.||.++...=+.= .||+.|.+.|+.+|+... ...||.|+.+.+..
T Consensus       180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~  230 (238)
T 3nw0_A          180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE  230 (238)
T ss_dssp             CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred             CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence            34599999998854433 289999999999999853 46899999886643

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=90.45  E-value=0.17  Score=49.57  Aligned_cols=21  Identities=14%  Similarity=0.169  Sum_probs=14.4

Q ss_pred             HHHHHHhcCCCHHHHHHHHHH
Q 006494          406 RPLVQLLSYPDSKIQEHTVTA  426 (643)
Q Consensus       406 ~~Lv~lL~~~~~~~~~~a~~~  426 (643)
                      +.|..+++++++.++..++..
T Consensus       101 ~~L~~ll~D~d~~VR~~aA~~  121 (244)
T 1lrv_A          101 EQLSALMFDEDREVRITVADR  121 (244)
T ss_dssp             GGGGGTTTCSCHHHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHh
Confidence            456667777777777776653

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=89.98  E-value=7.7  Score=40.42  Aligned_cols=162  Identities=19%  Similarity=0.260  Sum_probs=101.2

Q ss_pred             HHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcC----C-------CHHHHHHHHHHHHhcccChhhHHHHH-hcCChHH
Q 006494          381 SVMKIRMLSKENPDNRILIANNGGIRPLVQLLSY----P-------DSKIQEHTVTALLNLSLDETNKRHIA-REGAIPA  448 (643)
Q Consensus       381 Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~----~-------~~~~~~~a~~~L~nLs~~~~~k~~i~-~~g~i~~  448 (643)
                      .+..|+...+.++.....-...+|+..|+..|..    +       +...+..++.+|..+..+..+...+. ..+++..
T Consensus        25 ~L~~L~v~Lrt~~~~Wv~~F~~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~  104 (386)
T 2bnx_A           25 CLESLRVSLNNNPVSWVQTFGAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILL  104 (386)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHH
T ss_pred             HHHHHhHHHhcCCcHHHHHHHHhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHH
Confidence            3445544333443332221135777777777742    1       34667788899988887777766666 6678999


Q ss_pred             HHHHHccCCHHHHHHHHHHHHHcccccc--c-cchh----------hccCChHHHHHHcccC-ChhhHHHHHHHHHHhhc
Q 006494          449 IIEILQNGTNEARENSAAALFSLSMLDE--N-RVMV----------GNLNGIPPLVNLLRYG-SIRGKKDAATALFNLSI  514 (643)
Q Consensus       449 Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~--~-k~~i----------~~~g~i~~Lv~lL~s~-~~~~k~~A~~aL~nLs~  514 (643)
                      |+..|.+..+.++..+.-+|..++..++  . ...+          .+..-+..+++.+.++ +.+.+..++..+-.|..
T Consensus       105 l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~  184 (386)
T 2bnx_A          105 LVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALIT  184 (386)
T ss_dssp             HHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHC
Confidence            9999988888898888888888776543  2 2222          2334677888888754 55566555555555666


Q ss_pred             CCCc-------hHHHHhcCcHHHHHHHhccCChhh
Q 006494          515 NQSN-------KSRAIKAGIIPSLLKLLEDKALGM  542 (643)
Q Consensus       515 ~~en-------~~~iv~~G~v~~Lv~lL~~~~~~~  542 (643)
                      .+++       |..+...|..+.+-.+=...++.+
T Consensus       185 ~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L  219 (386)
T 2bnx_A          185 PAEELDFRVHIRSELMRLGLHQVLQELREIENEDM  219 (386)
T ss_dssp             TCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHH
T ss_pred             CCCCHHHHHHHHHHHHHCChHHHHHHHhccCChhH
Confidence            6654       455666776666544433345444

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=89.57  E-value=12  Score=43.85  Aligned_cols=171  Identities=13%  Similarity=-0.011  Sum_probs=97.1

Q ss_pred             CCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHc---c--cCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHH
Q 006494          456 GTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLL---R--YGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPS  530 (643)
Q Consensus       456 ~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL---~--s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~  530 (643)
                      .++..++.+..++..++..-....    ...++.++.++   .  +.++.++..++.+|..++..-....... ..+++.
T Consensus       476 ~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l-~~vl~~  550 (971)
T 2x1g_F          476 THWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI-PPAINL  550 (971)
T ss_dssp             TCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH-HHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH-HHHHHH
Confidence            466788888888888864322111    12344444433   3  2377889999999998875211111111 235666


Q ss_pred             HHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHh--cCcHHHHHHHHhc--CChHHHHHHHHHHHHhccCCH-HHHHHH
Q 006494          531 LLKLLEDKALGMVDEALSILQLLASHPEGRNEIGR--LSFIETLVEIIKN--GTPKNKECATSVLLELGLNNS-YFILAA  605 (643)
Q Consensus       531 Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~--~g~i~~Lv~lL~~--~s~~~ke~A~~~L~~L~~~~~-~~~~~~  605 (643)
                      |+..| +  +.+...|+.++.+++.  +.+..+..  ...+..+..++.+  .+...+..+..++..+...-+ +.....
T Consensus       551 l~~~l-~--~~v~~~A~~al~~l~~--~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~  625 (971)
T 2x1g_F          551 LVRGL-N--SSMSAQATLGLKELCR--DCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKY  625 (971)
T ss_dssp             HHHHH-H--SSCHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHH
T ss_pred             HHHHh-C--hHHHHHHHHHHHHHHH--HHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            66666 3  6789999999999994  33444432  2456666777776  357888888888888876421 222221


Q ss_pred             HHcCcHHHHH----HHHhhC--CHHHHHHHHHHHHHhh
Q 006494          606 LQYGVYEHLV----EITRCG--TNRGQRKANSLLQHMS  637 (643)
Q Consensus       606 ~~~g~i~~L~----~ll~~g--~~~~k~~A~~lL~~l~  637 (643)
                      .+ ..++++.    .++.+.  ++..+..+...|..|+
T Consensus       626 ~~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~  662 (971)
T 2x1g_F          626 LD-IIVSPCFEELQAICQADSKTPAARIRTIFRLNMIS  662 (971)
T ss_dssp             HH-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH
Confidence            11 2333333    333333  4445555666665554

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=88.44  E-value=10  Score=40.40  Aligned_cols=132  Identities=16%  Similarity=0.151  Sum_probs=93.6

Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHH
Q 006494          361 EEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHI  440 (643)
Q Consensus       361 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i  440 (643)
                      .....++..- +++.....-|+.-|....++.|+....     ++..++.++...|..++..|+..|-.++.+ ++...+
T Consensus        29 ~~y~~Il~~~-kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~ki  101 (507)
T 3u0r_A           29 DAYQVILDGV-KGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPRV  101 (507)
T ss_dssp             HHHHHHHHGG-GSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHHH
T ss_pred             HHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhhH
Confidence            4455555544 446888888999999999888887665     456799999999999999999999999988 443333


Q ss_pred             HhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHH
Q 006494          441 AREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFN  511 (643)
Q Consensus       441 ~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~n  511 (643)
                           ...|+.+|.+.+.......-.+|..|-..+.       .+.+..|...+.+++..++..++.-|..
T Consensus       102 -----aDvL~QlLqtdd~~E~~~V~~sL~sllk~Dp-------k~tl~~lf~~i~~~~e~~Rer~lkFi~~  160 (507)
T 3u0r_A          102 -----ADILTQLLQTDDSAEFNLVNNALLSIFKMDA-------KGTLGGLFSQILQGEDIVRERAIKFLST  160 (507)
T ss_dssp             -----HHHHHHHTTCCCHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHhccchHHHHHHHHHHHHHHhcCh-------HHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence                 4568888888776555555555555432221       2456667766666777777777766653

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=87.86  E-value=15  Score=43.00  Aligned_cols=211  Identities=13%  Similarity=0.016  Sum_probs=120.5

Q ss_pred             CCHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHHHH---c--cCCHHHHHHHHHHHHHccccc-cccchhhccCChH
Q 006494          415 PDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEIL---Q--NGTNEARENSAAALFSLSMLD-ENRVMVGNLNGIP  488 (643)
Q Consensus       415 ~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL---~--~~~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~  488 (643)
                      .++..++.++.++..++..-....    ...++.++.++   .  +.++.+|..++.++..++..- .+...+  ..+++
T Consensus       476 ~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl~  549 (971)
T 2x1g_F          476 THWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI--PPAIN  549 (971)
T ss_dssp             TCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH--HHHHH
T ss_pred             CcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH--HHHHH
Confidence            578899999999998875422111    13445455444   3  247889999999999887321 111111  23556


Q ss_pred             HHHHHcccCChhhHHHHHHHHHHhhcCCCchHHHHh--cCcHHHHHHHhccC--ChhhHHHHHHHHHHHhCC-h-hhHHH
Q 006494          489 PLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIK--AGIIPSLLKLLEDK--ALGMVDEALSILQLLASH-P-EGRNE  562 (643)
Q Consensus       489 ~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~--~G~v~~Lv~lL~~~--~~~~~~~Al~iL~nLa~~-~-~~~~~  562 (643)
                      .|+..| +  +.++..|+.++.+++..  .+..+..  .+.+..|.+++..+  +...+..++.++..++.. + +....
T Consensus       550 ~l~~~l-~--~~v~~~A~~al~~l~~~--~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~  624 (971)
T 2x1g_F          550 LLVRGL-N--SSMSAQATLGLKELCRD--CQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPK  624 (971)
T ss_dssp             HHHHHH-H--SSCHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHH
T ss_pred             HHHHHh-C--hHHHHHHHHHHHHHHHH--HHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            666666 3  77899999999999942  2333332  34555666666652  456777778888877764 1 33323


Q ss_pred             HHhcCcHHHHHHHH----hcC--ChHHHHHHHHHHHHhccC-----C-----------HHHHHHHHHcCcHHHHHHHHhh
Q 006494          563 IGRLSFIETLVEII----KNG--TPKNKECATSVLLELGLN-----N-----------SYFILAALQYGVYEHLVEITRC  620 (643)
Q Consensus       563 i~~~g~i~~Lv~lL----~~~--s~~~ke~A~~~L~~L~~~-----~-----------~~~~~~~~~~g~i~~L~~ll~~  620 (643)
                      ... ..+++++..+    ...  ++..+......|..|+..     .           ..... -....+++.+..++..
T Consensus       625 ~~~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~i~~~l~~~l~~  702 (971)
T 2x1g_F          625 YLD-IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVL-LVMQRTMPIFKRIAEM  702 (971)
T ss_dssp             HHH-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCH-HHHHTTHHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchH-HHHHHHHHHHHHHHHh
Confidence            222 2344444433    222  343444555555444321     0           00001 1124578888877754


Q ss_pred             C--CHHHHHHHHHHHHHhhh
Q 006494          621 G--TNRGQRKANSLLQHMSK  638 (643)
Q Consensus       621 g--~~~~k~~A~~lL~~l~~  638 (643)
                      .  ++.+.+.|..+++.+..
T Consensus       703 ~~~~~~v~e~~~~~~~~~~~  722 (971)
T 2x1g_F          703 WVEEIDVLEAACSAMKHAIT  722 (971)
T ss_dssp             TTTCHHHHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHH
Confidence            3  67889999998887644

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=87.40  E-value=31  Score=40.12  Aligned_cols=219  Identities=11%  Similarity=0.042  Sum_probs=124.8

Q ss_pred             HHHHHHHHHh-hcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhc-CCCHHHHHHHHHHHHhccc-----
Q 006494          360 IEEICSLIQN-LSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLS-YPDSKIQEHTVTALLNLSL-----  432 (643)
Q Consensus       360 ~~~i~~Lv~~-L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~nLs~-----  432 (643)
                      -..+..+++. ..+.+.+.+..|-..|..+-+ ++         ++...+..+|. +.+..++..|+.+|.|...     
T Consensus        23 ~~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~-~p---------~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~   92 (963)
T 2x19_B           23 VENVEKALHQLYYDPNIENKNLAQKWLMQAQV-SP---------QAWHFSWQLLQPDKVPEIQYFGASALHIKISRYWSD   92 (963)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-ST---------THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhc-CH---------HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhCHHh
Confidence            3456666655 445788888888888877653 33         44555666675 4578889999999988642     


Q ss_pred             -ChhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHccc-----CChhhHHHHH
Q 006494          433 -DETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRY-----GSIRGKKDAA  506 (643)
Q Consensus       433 -~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s-----~~~~~k~~A~  506 (643)
                       .++.+..+.+. .+..+... .+++..++...+.++..++..+--.   ...+.++.|+.++++     .+......++
T Consensus        93 l~~~~~~~ir~~-ll~~l~~~-~~~~~~ir~kl~~~la~i~~~~~p~---~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l  167 (963)
T 2x19_B           93 IPTDQYESLKAQ-LFTQITRF-ASGSKIVLTRLCVALASLALSMMPD---AWPCAVADMVRLFQAEDSPVDGQGRCLALL  167 (963)
T ss_dssp             SCGGGHHHHHHH-HHHHHHHT-TTSCHHHHHHHHHHHHHHHHHHTTT---TSTTHHHHHHHHHCC------CHHHHHHHH
T ss_pred             CCHHHHHHHHHH-HHHHHHHH-cCCCHHHHHHHHHHHHHHHHHhCcc---ccchHHHHHHHHHhhhccCCCcHHHHHHHH
Confidence             33444444332 33333331 1246778888888888887543211   146788999998876     2445667777


Q ss_pred             HHHHHhhc-C--C---CchHHHHh---cCcHHHHH----HHhccCC-h-hhHHHHHHHHHHHhCChhhHHHHHhcCcHHH
Q 006494          507 TALFNLSI-N--Q---SNKSRAIK---AGIIPSLL----KLLEDKA-L-GMVDEALSILQLLASHPEGRNEIGRLSFIET  571 (643)
Q Consensus       507 ~aL~nLs~-~--~---en~~~iv~---~G~v~~Lv----~lL~~~~-~-~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~  571 (643)
                      .+|..|+. .  .   ..+..-+.   ...++.++    .++.+.. . .+...++.++.........  .......++.
T Consensus       168 ~iL~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~--~~~~~~ll~~  245 (963)
T 2x19_B          168 ELLTVLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVP--LQDCEALIQA  245 (963)
T ss_dssp             HHHHHHHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCC--GGGTHHHHHH
T ss_pred             HHHHhCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCC--cccchHHHHH
Confidence            88777763 1  1   11111111   12344444    4443321 1 3666677666543331110  0011234555


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHhccC
Q 006494          572 LVEIIKNGTPKNKECATSVLLELGLN  597 (643)
Q Consensus       572 Lv~lL~~~s~~~ke~A~~~L~~L~~~  597 (643)
                      +...+  .++..++.|+.+|..+...
T Consensus       246 l~~~l--~~~~~~~~a~~~l~~i~~~  269 (963)
T 2x19_B          246 AFAAL--QDSELFDSSVEAIVNAISQ  269 (963)
T ss_dssp             HHHHT--TSTTTHHHHHHHHHHHHTC
T ss_pred             HHHHh--CCchHHHHHHHHHHHHHcc
Confidence            55555  3577888999999988875

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=87.04  E-value=11  Score=44.00  Aligned_cols=173  Identities=11%  Similarity=0.074  Sum_probs=104.2

Q ss_pred             ccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHc---ccCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHH
Q 006494          454 QNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLL---RYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPS  530 (643)
Q Consensus       454 ~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL---~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~  530 (643)
                      .+.++..++.+..++..++..-..    .....++.++..+   .++++.++..++.++..++..-....... ..+++.
T Consensus       459 ~~~~w~~~eaal~al~~i~~~~~~----~~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l-~~vl~~  533 (963)
T 2x19_B          459 EPYSWQHTEALLYGFQSIAETIDV----NYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMI-NSVLPL  533 (963)
T ss_dssp             CSCCHHHHHHHHHHHHHHTTSCCS----SCCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHH-TTTHHH
T ss_pred             CCCchHHHHHHHHHHHHHHhhcCc----hhhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHH-HHHHHH
Confidence            345788888888888888743211    0123344555544   33467788899999988875311112333 468888


Q ss_pred             HHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHh--cCcHHHHHHHHhc--CChHHHHHHHHHHHHhccCCH-HHHHHH
Q 006494          531 LLKLLEDKALGMVDEALSILQLLASHPEGRNEIGR--LSFIETLVEIIKN--GTPKNKECATSVLLELGLNNS-YFILAA  605 (643)
Q Consensus       531 Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~--~g~i~~Lv~lL~~--~s~~~ke~A~~~L~~L~~~~~-~~~~~~  605 (643)
                      |+..|.+  +.++..|+.++.+++..  .+..+..  ...+..|..++.+  .+...+..+..++..+...-+ +.....
T Consensus       534 l~~~l~~--~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~  609 (963)
T 2x19_B          534 VLHALGN--PELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKN  609 (963)
T ss_dssp             HHHHTTC--GGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             HHHHhCC--chHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            8888854  78999999999999953  2222322  1344555566664  356788888888888876543 333332


Q ss_pred             HHcCcHHHHHHHHh----hC-CHHHHHHHHHHHHHh
Q 006494          606 LQYGVYEHLVEITR----CG-TNRGQRKANSLLQHM  636 (643)
Q Consensus       606 ~~~g~i~~L~~ll~----~g-~~~~k~~A~~lL~~l  636 (643)
                      .+ .+++++...+.    +. ++..+.....++..|
T Consensus       610 ~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l  644 (963)
T 2x19_B          610 LH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLL  644 (963)
T ss_dssp             HH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            22 34555544332    32 566666555555544

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=85.67  E-value=0.61  Score=45.58  Aligned_cols=20  Identities=20%  Similarity=0.177  Sum_probs=13.7

Q ss_pred             HHHHHHhcCCCHHHHHHHHH
Q 006494          406 RPLVQLLSYPDSKIQEHTVT  425 (643)
Q Consensus       406 ~~Lv~lL~~~~~~~~~~a~~  425 (643)
                      +.|..+++++++.++..++.
T Consensus       125 ~~L~~L~~D~d~~VR~~aA~  144 (244)
T 1lrv_A          125 EQLEQMAADRDYLVRAYVVQ  144 (244)
T ss_dssp             GGGGGGTTCSSHHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHH
Confidence            34556677777888777765

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=84.97  E-value=6  Score=38.06  Aligned_cols=141  Identities=18%  Similarity=0.192  Sum_probs=88.9

Q ss_pred             cCChHHHHHHHcc----C-------CHHHHHHHHHHHHHccccccccchhhc-cCChHHHHHHcccCChhhHHHHHHHHH
Q 006494          443 EGAIPAIIEILQN----G-------TNEARENSAAALFSLSMLDENRVMVGN-LNGIPPLVNLLRYGSIRGKKDAATALF  510 (643)
Q Consensus       443 ~g~i~~Lv~lL~~----~-------~~~~~~~Aa~~L~~Ls~~~~~k~~i~~-~g~i~~Lv~lL~s~~~~~k~~A~~aL~  510 (643)
                      .+|+..|+.+|..    +       +......+..+|..+.-.......+.. .+++..|+..|.+.++.++..++..|.
T Consensus        42 ~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~  121 (233)
T 2f31_A           42 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS  121 (233)
T ss_dssp             HHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence            3556666666532    1       234566777888888755554444444 678999999999999999999999999


Q ss_pred             HhhcCCC--c-hHHHHh----------cCcHHHHHHHhcc-CChhhHHHHHHHHHHHhCChh-------hHHHHHhcCcH
Q 006494          511 NLSINQS--N-KSRAIK----------AGIIPSLLKLLED-KALGMVDEALSILQLLASHPE-------GRNEIGRLSFI  569 (643)
Q Consensus       511 nLs~~~e--n-~~~iv~----------~G~v~~Lv~lL~~-~~~~~~~~Al~iL~nLa~~~~-------~~~~i~~~g~i  569 (643)
                      .+|..++  + ...+++          ..-+.++++.|.+ .+.+....++..+-.+...++       .|..+...|..
T Consensus       122 ~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~  201 (233)
T 2f31_A          122 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLH  201 (233)
T ss_dssp             HHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHH
T ss_pred             HHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChH
Confidence            9998654  4 444432          2356667777764 344566667777777776643       34444555555


Q ss_pred             HHHHHHHhcCChHH
Q 006494          570 ETLVEIIKNGTPKN  583 (643)
Q Consensus       570 ~~Lv~lL~~~s~~~  583 (643)
                      +.+-.+=...++..
T Consensus       202 ~il~~l~~~~~~~L  215 (233)
T 2f31_A          202 QVLQELREIENEDM  215 (233)
T ss_dssp             HHHHHHHHCCCHHH
T ss_pred             HHHHHHhccCCHHH
Confidence            54443333345443

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=82.75  E-value=8.6  Score=40.02  Aligned_cols=142  Identities=15%  Similarity=0.176  Sum_probs=91.8

Q ss_pred             cCChHHHHHHccc-----------CChhhHHHHHHHHHHhhcCCCchHHHHh-cCcHHHHHHHhccCChhhHHHHHHHHH
Q 006494          484 LNGIPPLVNLLRY-----------GSIRGKKDAATALFNLSINQSNKSRAIK-AGIIPSLLKLLEDKALGMVDEALSILQ  551 (643)
Q Consensus       484 ~g~i~~Lv~lL~s-----------~~~~~k~~A~~aL~nLs~~~en~~~iv~-~G~v~~Lv~lL~~~~~~~~~~Al~iL~  551 (643)
                      .+|+..|+.+|..           .+......++.+|..+..+......++. ..++..|...|.+..+.+...++.+|.
T Consensus       108 ~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~  187 (383)
T 3eg5_B          108 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS  187 (383)
T ss_dssp             HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred             HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            3456666666631           1235556778888888877766666665 678999999998888899999999999


Q ss_pred             HHhCChh---hHHHHHh----------cCcHHHHHHHHhcC-ChHHHHHHHHHHHHhccCCH--H----HHHHHHHcCcH
Q 006494          552 LLASHPE---GRNEIGR----------LSFIETLVEIIKNG-TPKNKECATSVLLELGLNNS--Y----FILAALQYGVY  611 (643)
Q Consensus       552 nLa~~~~---~~~~i~~----------~g~i~~Lv~lL~~~-s~~~ke~A~~~L~~L~~~~~--~----~~~~~~~~g~i  611 (643)
                      .+|..++   |...+.+          ..-...++..|+++ +.+.+..++..+-.+..+.+  .    .+..+...|..
T Consensus       188 ~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~  267 (383)
T 3eg5_B          188 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLH  267 (383)
T ss_dssp             HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHH
T ss_pred             HHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChH
Confidence            9998754   3555543          23466778878763 44555555555545555432  2    23334567877


Q ss_pred             HHHHHHHhhCCHHH
Q 006494          612 EHLVEITRCGTNRG  625 (643)
Q Consensus       612 ~~L~~ll~~g~~~~  625 (643)
                      +.+..+-..+++..
T Consensus       268 ~il~~lr~~~~~~L  281 (383)
T 3eg5_B          268 QVLQELREIENEDM  281 (383)
T ss_dssp             HHHHHHTTSCCHHH
T ss_pred             HHHHHHhcCCChhH
Confidence            77776544444433

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=82.53  E-value=24  Score=35.67  Aligned_cols=156  Identities=16%  Similarity=0.093  Sum_probs=115.7

Q ss_pred             hhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCC-chHHH---HhcCcHHHHHHHhcc-CChhhHHHHHHHHHHHh
Q 006494          480 MVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQS-NKSRA---IKAGIIPSLLKLLED-KALGMVDEALSILQLLA  554 (643)
Q Consensus       480 ~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~e-n~~~i---v~~G~v~~Lv~lL~~-~~~~~~~~Al~iL~nLa  554 (643)
                      .+...+.+..|+..|..=+-+.++++..+..++..... ++...   +.. -...|..++.. +++++.-.+=.+|....
T Consensus        73 ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~-~peil~~L~~gYe~~diAl~~G~mLReci  151 (341)
T 1upk_A           73 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT-QQNILFMLLKGYESPEIALNCGIMLRECI  151 (341)
T ss_dssp             HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT-CTHHHHHHHHGGGSTTTHHHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc-CHHHHHHHHHhhccchhHhHHHHHHHHHH
Confidence            34556788899999988899999999999999887433 33222   222 23333333332 46667777778888888


Q ss_pred             CChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcC---cHHHHHHHHhhCCHHHHHHHHH
Q 006494          555 SHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYG---VYEHLVEITRCGTNRGQRKANS  631 (643)
Q Consensus       555 ~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g---~i~~L~~ll~~g~~~~k~~A~~  631 (643)
                      .++.....+...+.+-.+.+.+..++=++-.-|..++..|-......+...+..+   .......|+.+++=-+|+.+..
T Consensus       152 r~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlK  231 (341)
T 1upk_A          152 RHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLK  231 (341)
T ss_dssp             TSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred             HhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHH
Confidence            8988888888888888999999988888888888888887766665555555533   4666778899999999999999


Q ss_pred             HHHHh
Q 006494          632 LLQHM  636 (643)
Q Consensus       632 lL~~l  636 (643)
                      +|.-|
T Consensus       232 LLgel  236 (341)
T 1upk_A          232 LLGEL  236 (341)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99865

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=82.25  E-value=23  Score=36.05  Aligned_cols=112  Identities=10%  Similarity=0.043  Sum_probs=90.4

Q ss_pred             HHHhhcCCCc-hHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhc-CChHHHHH
Q 006494          509 LFNLSINQSN-KSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKN-GTPKNKEC  586 (643)
Q Consensus       509 L~nLs~~~en-~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~-~s~~~ke~  586 (643)
                      |.||..+..| ..-++.++++..+...+.-++.++.......|...+....-+..=. .+.+|.++..+.. +.+++-..
T Consensus       266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~L-~e~LPFi~~~i~~h~eDdvvYS  344 (619)
T 3c2g_A          266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTPL-ENILPFLLRLIEIHPDDEVIYS  344 (619)
T ss_dssp             HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSCC-TTHHHHHHHHHHHCCCHHHHHH
T ss_pred             HHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhccc-cccchHHHHHhccCCCcceEEe
Confidence            5677776665 6788999999999999988999999999999999887644332211 2578888887754 66788888


Q ss_pred             HHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhC
Q 006494          587 ATSVLLELGLNNSYFILAALQYGVYEHLVEITRCG  621 (643)
Q Consensus       587 A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g  621 (643)
                      ..+.|.+...+.......++..|+++.|...+..-
T Consensus       345 GTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky  379 (619)
T 3c2g_A          345 GTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKY  379 (619)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTS
T ss_pred             cchHHHHHHhcccchHHHHhccCcHHHHHHHHhhC
Confidence            89999999999988888899999999999987644

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=80.10  E-value=32  Score=40.70  Aligned_cols=221  Identities=16%  Similarity=0.125  Sum_probs=129.8

Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhc-CCCHHHHHHHHHHHHhcc------c
Q 006494          360 IEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLS-YPDSKIQEHTVTALLNLS------L  432 (643)
Q Consensus       360 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~nLs------~  432 (643)
                      -..+..++..+.+++.+.|..|-..|..+-+ ++         ++...+..+|. +.+..++..|+..|.|..      .
T Consensus        15 ~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~-~p---------~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l   84 (1049)
T 3m1i_C           15 IALLDQVVSTFYQGSGVQQKQAQEILTKFQD-NP---------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLL   84 (1049)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-ST---------TGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGS
T ss_pred             HHHHHHHHHHHhCCChHHHHHHHHHHHHHHh-Cc---------hHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccC
Confidence            3456666666666667777777777776643 33         34444555553 457888999999998864      2


Q ss_pred             ChhhHHHHHhcCChHHHHHHHccC-----CHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHH
Q 006494          433 DETNKRHIAREGAIPAIIEILQNG-----TNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAAT  507 (643)
Q Consensus       433 ~~~~k~~i~~~g~i~~Lv~lL~~~-----~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~  507 (643)
                      .++.+..+.+ ..+..+...-.++     +..++...+.++..++..+--.   ...+.++.|+.++. .+...+..++.
T Consensus        85 ~~~~~~~ir~-~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~---~Wp~ll~~L~~~~~-~~~~~~~~~l~  159 (1049)
T 3m1i_C           85 PNDHRIGIRN-FVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQ---NWPEFIPELIGSSS-SSVNVCENNMI  159 (1049)
T ss_dssp             CHHHHHHHHH-HHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTT---TCTTHHHHHHHHHT-TCHHHHHHHHH
T ss_pred             CHHHHHHHHH-HHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcc---cchHHHHHHHHHHc-cChHHHHHHHH
Confidence            3444444432 2333333322111     2456777777777776432110   23678899999886 45556677777


Q ss_pred             HHHHhhc----C-CC----ch-----HHHHh--cCcHHHHHHHhcc-CChhhHHHHHHHHHHHhCChhhHHHHHhcCcHH
Q 006494          508 ALFNLSI----N-QS----NK-----SRAIK--AGIIPSLLKLLED-KALGMVDEALSILQLLASHPEGRNEIGRLSFIE  570 (643)
Q Consensus       508 aL~nLs~----~-~e----n~-----~~iv~--~G~v~~Lv~lL~~-~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~  570 (643)
                      +|..|+.    . .+    .+     ..+..  ..+++.+..++.+ .+..+...++.++.+....-+.- .+.+...++
T Consensus       160 ~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~-~~~~~~ll~  238 (1049)
T 3m1i_C          160 VLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYR-YIYETNILE  238 (1049)
T ss_dssp             HHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTH-HHHSSSHHH
T ss_pred             HHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHH-HHhhhhHHH
Confidence            7777762    1 11    11     11222  1123334444543 45668888999998877764322 244556677


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHhccC
Q 006494          571 TLVEIIKNGTPKNKECATSVLLELGLN  597 (643)
Q Consensus       571 ~Lv~lL~~~s~~~ke~A~~~L~~L~~~  597 (643)
                      .+.+.+. .++..+..|+.+|..+...
T Consensus       239 ~l~~~~l-~~~~~~~~a~~~L~~i~~~  264 (1049)
T 3m1i_C          239 LLSTKFM-TSPDTRAITLKCLTEVSNL  264 (1049)
T ss_dssp             HHHTHHH-HSHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHhC-CCHhHHHHHHHHHHHHHhC
Confidence            6663332 3688889999999888765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	643
d1t1ha_	78	g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cre	2e-24
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-18
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	7e-16
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	1e-15
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-10
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-05
d2c2la2	80	g.44.1.2 (A:225-304) STIP1 homology and U box-cont	3e-18
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	2e-16
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	2e-14
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	1e-12
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	3e-10
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	4e-09
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	6e-05
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	7e-05
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	3e-16
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	6e-08
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	3e-13
d1wgma_	98	g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Hu	5e-13
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	4e-12
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	3e-07
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	8e-07
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	3e-06
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	5e-06
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	1e-09
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	5e-08
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	7e-07
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	2e-05
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	2e-07
d1jm7b_	97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	3e-05
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	7e-05
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	1e-04
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	2e-04
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	3e-04
d1g25a_	65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	0.001

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 94.8 bits (235), Expect = 2e-24
 Identities = 44/74 (59%), Positives = 56/74 (75%)

Query: 269 VPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYAL 328
            P  F CP++LE+M DPVIV+TGQTYER SIQ+WL++ HKTCPK+ + L H  L PNY L
Sbjct: 5   FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVL 64

Query: 329 RNLIVQWCEKNNVE 342
           ++LI  WCE N +E
Sbjct: 65  KSLIALWCESNGIE 78

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.5 bits (212), Expect = 2e-18
 Identities = 76/507 (14%), Positives = 145/507 (28%), Gaps = 31/507 (6%)

Query: 51  RKECLNMVRRLKLLVPLLEEIRELDGQVSSEALNCLANLKKPLLAAKKLLKDCNYGSKIY 110
           R   +   + +  +V  ++     D + +      L NL          +        + 
Sbjct: 51  RHAIMRSPQMVSAIVRTMQ--NTNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALV 107

Query: 111 LAAESEAVMSRFHAVYDKLYEALDDVPYDELGISDEVKEQ--VELMRMQLQRAKGRTDTQ 168
               S      F+A+       L ++   + G    V+    ++ M   L +   +    
Sbjct: 108 KMLGSPVDSVLFYAI-----TTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAI 162

Query: 169 DMELAMDMMVVFSKEDDRNADSAILERLAKKLELHTIADLKAETLAVRKLVKERGGHKAD 228
             +    +     +       S   + L   +  +T   L   T  V K++     +K  
Sbjct: 163 TTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPA 222

Query: 229 SISQITDLLGKFKQIAGVEDTLVLDGSVSARKLQRCQTMLVPHEFLCPVTLEIMTDPVIV 288
            +            +      LV +   + R L    T     E L    ++++    I 
Sbjct: 223 IVEAGGMQ-ALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDIN 281

Query: 289 ATGQTYERESIQRWLNSNHKTCPKTGQILDHL-SLAPNYALRNLIVQWCEKNNVELPKKD 347
                    S     N  +K        ++ L         R  I +        L  + 
Sbjct: 282 VVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRH 341

Query: 348 TNTGSDASSAALIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRP 407
                  ++  L   +  +++ L          + + +       P N   +   G I  
Sbjct: 342 QEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPR 401

Query: 408 LVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAA 467
           LVQLL       Q  T          E  +                     E  E    A
Sbjct: 402 LVQLLVRAHQDTQRRTSMGGTQQQFVEGVRME-------------------EIVEGCTGA 442

Query: 468 LFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGI 527
           L  L+    NR+++  LN IP  V LL       ++ AA  L  L+ ++         G 
Sbjct: 443 LHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGA 502

Query: 528 IPSLLKLLEDKALGMVDEALSILQLLA 554
              L +LL  +  G+   A ++L  ++
Sbjct: 503 TAPLTELLHSRNEGVATYAAAVLFRMS 529

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.8 bits (192), Expect = 7e-16
 Identities = 41/165 (24%), Positives = 65/165 (39%), Gaps = 3/165 (1%)

Query: 402 NGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIARE-GAIPAIIEILQNGTN-E 459
              I  L +LL+  D  +       +  LS  E ++  I R    + AI+  +QN  + E
Sbjct: 16  TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVE 75

Query: 460 ARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSI-NQSN 518
               +A  L +LS   E  + +    GIP LV +L          A T L NL +  +  
Sbjct: 76  TARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGA 135

Query: 519 KSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEI 563
           K     AG +  ++ LL    +  +      LQ+LA   +    I
Sbjct: 136 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLI 180

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.0 bits (190), Expect = 1e-15
 Identities = 36/195 (18%), Positives = 69/195 (35%), Gaps = 20/195 (10%)

Query: 401 NNGGIRPLVQLLSYPDSK-IQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTNE 459
            + G+  +V+LL  P    + + TV  + NL+L   N   +  +GAIP ++++L     +
Sbjct: 353 LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD 412

Query: 460 ARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNK 519
            +  ++        ++  R                        +    AL  L+ +  N+
Sbjct: 413 TQRRTSMGGTQQQFVEGVR-------------------MEEIVEGCTGALHILARDVHNR 453

Query: 520 SRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNG 579
                   IP  ++LL      +   A  +L  LA   E    I        L E++ + 
Sbjct: 454 IVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSR 513

Query: 580 TPKNKECATSVLLEL 594
                  A +VL  +
Sbjct: 514 NEGVATYAAAVLFRM 528

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.1 bits (146), Expect = 2e-10
 Identities = 50/316 (15%), Positives = 100/316 (31%), Gaps = 28/316 (8%)

Query: 330 NLIVQWCEKNNVELPKKDTNTGSDASSAALIEEIC-SLIQNLSSSQLNIKRDSVMKIRML 388
             +    ++          N    A+    +E +  +L+Q L S  +N+   +   +  L
Sbjct: 234 LHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNL 293

Query: 389 SKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIA------R 442
           +  N  N++++   GGI  LV+ +     +             L   ++           
Sbjct: 294 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRL 353

Query: 443 EGAIPAIIEILQNGTNEARENSAAALFSL-SMLDENRVMVGNLNGIPPLVNLLRYGSIRG 501
              +P ++++L   ++     +   L    ++   N   +     IP LV LL       
Sbjct: 354 HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDT 413

Query: 502 KKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRN 561
           ++  +         +  +   I                   V+     L +LA     R 
Sbjct: 414 QRRTSMGGTQQQFVEGVRMEEI-------------------VEGCTGALHILARDVHNRI 454

Query: 562 EIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCG 621
            I  L+ I   V+++ +     +  A  VL EL  +      A    G    L E+    
Sbjct: 455 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEA-AEAIEAEGATAPLTELLHSR 513

Query: 622 TNRGQRKANSLLQHMS 637
                  A ++L  MS
Sbjct: 514 NEGVATYAAAVLFRMS 529

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (104), Expect = 2e-05
 Identities = 25/121 (20%), Positives = 49/121 (40%), Gaps = 3/121 (2%)

Query: 523 IKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGR-LSFIETLVEIIKN-GT 580
           +    IP L KLL D+   +V++A  ++  L+     R+ I R    +  +V  ++N   
Sbjct: 14  LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTND 73

Query: 581 PKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSKRE 640
            +   C    L  L  +    +LA  + G    LV++     +     A + L ++   +
Sbjct: 74  VETARCTAGTLHNLSHHREG-LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ 132

Query: 641 H 641
            
Sbjct: 133 E 133

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 80

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.2 bits (189), Expect = 3e-18
 Identities = 20/71 (28%), Positives = 34/71 (47%)

Query: 269 VPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYAL 328
           +P      ++ E+M +P I  +G TY+R+ I+  L       P T   L    L PN A+
Sbjct: 4   IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAM 63

Query: 329 RNLIVQWCEKN 339
           + +I  +  +N
Sbjct: 64  KEVIDAFISEN 74

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.5 bits (194), Expect = 2e-16
 Identities = 40/296 (13%), Positives = 80/296 (27%), Gaps = 17/296 (5%)

Query: 365 SLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTV 424
             +Q LSS     +      I+    ++   +  +   GGI  LV LL  P+  +Q+   
Sbjct: 6   KAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAA 65

Query: 425 TALLNLSLD-ETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGN 483
            AL NL     TNK    R+  I   + +L+   N   +     L       +       
Sbjct: 66  GALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELI 125

Query: 484 LNGIPPLVNLL----------------RYGSIRGKKDAATALFNLSINQSNKSRAIKAGI 527
            + +P L + +                         +A   L NLS   + +        
Sbjct: 126 ADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSG 185

Query: 528 IPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECA 587
           +   L       +         ++         +            ++  N      E +
Sbjct: 186 LIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKS 245

Query: 588 TSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSKREHIP 643
           ++       +              E   + +    +    +    L   SK++   
Sbjct: 246 STGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATL 301

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.7 bits (179), Expect = 2e-14
 Identities = 36/167 (21%), Positives = 65/167 (38%), Gaps = 2/167 (1%)

Query: 405 IRPLVQLLSYPDSKIQEHTVTALLNLSL-DETNKRHIAREGAIPAIIEILQNGTNEAREN 463
           I   VQ LS  D K Q      + +    DE+ K+ + + G I  ++++L++     ++ 
Sbjct: 4   IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63

Query: 464 SAAALFSLSML-DENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRA 522
           +A AL +L      N++     NGI   V+LLR       +   T L     +       
Sbjct: 64  AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE 123

Query: 523 IKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFI 569
           + A  +P L   +     G  D   ++ + +       N  G L  +
Sbjct: 124 LIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNL 170

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.3 bits (165), Expect = 1e-12
 Identities = 18/131 (13%), Positives = 51/131 (38%), Gaps = 9/131 (6%)

Query: 394 DNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEIL 453
            ++++     G+  + +LL   +S +     + L N+S      R +  +   P +  +L
Sbjct: 322 MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQV-FPEVTRLL 380

Query: 454 QNGTN------EARENSAAALFSLSMLD-ENRVMVGNLNGIPPLVNLLR-YGSIRGKKDA 505
            + T       +   ++   + +L     +      + + +  ++NL R   S +  + A
Sbjct: 381 TSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAA 440

Query: 506 ATALFNLSINQ 516
              L ++  ++
Sbjct: 441 RLLLSDMWSSK 451

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (145), Expect = 3e-10
 Identities = 34/259 (13%), Positives = 88/259 (33%), Gaps = 22/259 (8%)

Query: 351 GSDASSAALIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQ 410
              A+S    + + + +  L +    +  +   + R L     +     ++ G       
Sbjct: 196 NCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSD 255

Query: 411 LLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTNE-------AREN 463
            +      +  +    L     +      +    AI   + ++     +           
Sbjct: 256 KM------MNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQ 309

Query: 464 SAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAI 523
           +  A   L     ++++     G+P +  LL+ G+    +  A+ L N+S +       +
Sbjct: 310 NLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHR-VM 368

Query: 524 KAGIIPSLLKLLEDKALGMVD------EALSILQ-LLASHPEGRNEIGRLSFIETLVEII 576
              + P + +LL        +       A   ++ L+AS P+   +    S +  ++ + 
Sbjct: 369 GNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLC 428

Query: 577 KN-GTPKNKECATSVLLEL 594
           ++  +PK  E A  +L ++
Sbjct: 429 RSSASPKAAEAARLLLSDM 447

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (136), Expect = 4e-09
 Identities = 51/333 (15%), Positives = 108/333 (32%), Gaps = 41/333 (12%)

Query: 351 GSDASSAALIEE--ICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPL 408
             +++   + +   IC L+  L S   N+++ +   +R L   +  N++      GIR  
Sbjct: 32  QDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREA 91

Query: 409 VQL-LSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEIL-------------- 453
           V L     +++IQ+     L NLS  +  K  +  +        ++              
Sbjct: 92  VSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMS 151

Query: 454 -QNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNL 512
            +    E   N+   L +LS  D  R  + N +G+   +       +   +    ++ N 
Sbjct: 152 REVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENC 211

Query: 513 SINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALS-----------------ILQLLAS 555
                N S  + A +     +L  +      +++ +                  L    +
Sbjct: 212 MCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEET 271

Query: 556 HPEGRNEIGRLSFIETLVEIIKNGTPKNK-ECATSVLLELGLNNSYFILAALQ-----YG 609
           +P+G   +     I T + ++         E     L  L  +         Q       
Sbjct: 272 NPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEK 331

Query: 610 VYEHLVEITRCGTNRGQRKANSLLQHMSKREHI 642
               +  + + G +   R   SLL +MS+   +
Sbjct: 332 GLPQIARLLQSGNSDVVRSGASLLSNMSRHPLL 364

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (101), Expect = 6e-05
 Identities = 19/114 (16%), Positives = 42/114 (36%), Gaps = 2/114 (1%)

Query: 527 IIPSLLKLLEDKALGMVDEALSILQLLASH-PEGRNEIGRLSFIETLVEIIKNGTPKNKE 585
            IP  ++ L  +           +Q         + ++ +L  I  LV+++++     ++
Sbjct: 3   TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62

Query: 586 CATSVLLELGLNNSYFILAALQYGVYEHLVEITR-CGTNRGQRKANSLLQHMSK 638
            A   L  L   ++   L   +       V + R  G    Q++   LL ++S 
Sbjct: 63  AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSS 116

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 7e-05
 Identities = 47/417 (11%), Positives = 100/417 (23%), Gaps = 35/417 (8%)

Query: 53  ECLNMVRRLKLLVPLLEEIRELDGQVSSEALNCLANLKKPLLAAKKLLKDCNYGSKIYLA 112
                V +L  +  L++ +R  +  V   A   L NL       K   +  N   +    
Sbjct: 35  SAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSL 94

Query: 113 AESEAVMSRFHAVYDKLYEALDDVPYDELGISDE--------VKEQVELMRMQLQRAKGR 164
                       +   L+         E  I+D         +             ++  
Sbjct: 95  LRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREV 154

Query: 165 TDTQDMELAMDMMVVFSKEDDRNADSAILERLAKKLELHTIADLKAETL-------AVRK 217
            D +    A   +   S  D           L   L  +    + A           +  
Sbjct: 155 VDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCV 214

Query: 218 LVKERGGHKADSISQITDLLGKFKQIAGVEDTLVLDGSVSARKLQRCQTMLVPHEFLCPV 277
           L        A+  ++   L    +     + +     + S + +       +P E   P 
Sbjct: 215 LHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPK 274

Query: 278 TLEIMTDPVIVAT--GQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRN----- 330
               +     + T      + +               T       S              
Sbjct: 275 GSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLP 334

Query: 331 LIVQWCEKNNVELPKKDT----NTGSDASSAALIEE--ICSLIQNLSSSQLN------IK 378
            I +  +  N ++ +       N         ++       + + L+S   N      I 
Sbjct: 335 QIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDIL 394

Query: 379 RDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDS-KIQEHTVTALLNLSLDE 434
             +   +R L    P       ++  +  ++ L     S K  E     L ++   +
Sbjct: 395 SSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSK 451

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 79.4 bits (194), Expect = 3e-16
 Identities = 51/319 (15%), Positives = 125/319 (39%), Gaps = 6/319 (1%)

Query: 329 RNLIVQWCEKNNVELPKKDTNTGSDASSAALIEEICSLIQNLSSSQLNIKRDSVMKIR-M 387
           R   +   +  + +   + + +      + L +E+  + Q L+S  +  +  + +K R +
Sbjct: 44  RRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQI 103

Query: 388 LSKENPDNRILIANNGGIRPLVQLLSY-PDSKIQEHTVTALLNLSLDETNKRH-IAREGA 445
           LS+E+     ++   G +  LV+ +       +Q     AL N++   + +   +    A
Sbjct: 104 LSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADA 163

Query: 446 IPAIIEILQNGTNEARENSAAALFSLSMLD-ENRVMVGNLNGIPPLVNLLRYGSIRGKKD 504
           +P  I++L  G+ E +E +  AL +++    + R  V   N + P++ L         + 
Sbjct: 164 VPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRT 223

Query: 505 AATALFNLSINQSN-KSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEI 563
           A   L NL   +      ++ +  +P+L KL+       + +A   +  L+  P+   + 
Sbjct: 224 ATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQA 283

Query: 564 GRLSFIETLV-EIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGT 622
                I   + E++ + +   +  A   +  +   N       +  GV   L  +     
Sbjct: 284 VIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPK 343

Query: 623 NRGQRKANSLLQHMSKREH 641
              +++A   + +++    
Sbjct: 344 ENIKKEACWTISNITAGNT 362

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.2 bits (126), Expect = 6e-08
 Identities = 50/223 (22%), Positives = 92/223 (41%), Gaps = 6/223 (2%)

Query: 363 ICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEH 422
           + +L + + S       D+   I  LS    +    + +    + LV+LLS+  + +Q  
Sbjct: 248 LPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTP 307

Query: 423 TVTALLNLSLDET-NKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLD-ENRVM 480
            + A+ N+        + +   G +PA+  +L +     ++ +   + +++  + E    
Sbjct: 308 ALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQA 367

Query: 481 VGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIK----AGIIPSLLKLLE 536
           V + N IPPLV LL     + KK+A  A+ N S     +   I+     G I  L  LLE
Sbjct: 368 VIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLE 427

Query: 537 DKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNG 579
                +++  L  L+ +    E   E   L+  E    I K G
Sbjct: 428 IADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAG 470

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.9 bits (155), Expect = 3e-13
 Identities = 16/81 (19%), Positives = 34/81 (41%), Gaps = 4/81 (4%)

Query: 256 VSARKLQRCQTML--VPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNS--NHKTCP 311
           +SA +++  Q ++  +     CP+ LE++ +PV       + +  + + LN       CP
Sbjct: 3   LSALRVEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCP 62

Query: 312 KTGQILDHLSLAPNYALRNLI 332
                +   SL  +     L+
Sbjct: 63  LCKNDITKRSLQESTRFSQLV 83

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.3 bits (153), Expect = 5e-13
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 2/75 (2%)

Query: 269 VPHEFLCPVTLEIMTDPVIVATGQ-TYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYA 327
              EFL P+   +M DPV++ + + T +R +I R L S  +T P     L    + PN  
Sbjct: 19  ACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTE 77

Query: 328 LRNLIVQWCEKNNVE 342
           L+  I +W  +   +
Sbjct: 78  LKEKIQRWLAERKQQ 92

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 66.4 bits (160), Expect = 4e-12
 Identities = 46/199 (23%), Positives = 81/199 (40%), Gaps = 14/199 (7%)

Query: 349 NTGSDASSAAL-IEEICSLIQNLSSSQLNIKRDSVMKIR-MLSKENPDNRILIANNGGIR 406
           + GS+  +    +E+   +++ ++S+ L  +  +    R +LS+E       I   G I 
Sbjct: 3   DIGSNQGTVNWSVED---IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIP 59

Query: 407 PLVQLLSY-PDSKIQEHTVTALLNLSLDETNKRH-IAREGAIPAIIEILQNGTNEARENS 464
             V  L     S IQ  +  AL N++   + +   +   GAIPA I +L +      E +
Sbjct: 60  KFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQA 119

Query: 465 AAALFSL-SMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKD-----AATALFNLSINQSN 518
             AL ++       R +V     I PL+ LL    +              L NL  N++ 
Sbjct: 120 VWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNP 179

Query: 519 -KSRAIKAGIIPSLLKLLE 536
                    I+P+L++LL 
Sbjct: 180 APPLDAVEQILPTLVRLLH 198

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.6 bits (119), Expect = 3e-07
 Identities = 30/195 (15%), Positives = 83/195 (42%), Gaps = 10/195 (5%)

Query: 367 IQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTA 426
           ++ L +++L I   ++  I  +     +    + + G +     LL+ P + IQ+     
Sbjct: 236 VKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWT 295

Query: 427 LLNLSLDETN-KRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSML--DENRVMVGN 483
           + N++    +  + +   G +P ++ +L     + ++ +A A+ + +     E  V + +
Sbjct: 296 MSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVH 355

Query: 484 LNGIPPLVNLLRYGSIRGKKDAATALFNL-----SINQSNKSRAI--KAGIIPSLLKLLE 536
              I PL+NLL     +  +    A+ N+      + ++ K   +  + G +  +  L  
Sbjct: 356 CGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQR 415

Query: 537 DKALGMVDEALSILQ 551
            +   +   +L++++
Sbjct: 416 HENESVYKASLNLIE 430

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.4 bits (116), Expect = 8e-07
 Identities = 22/114 (19%), Positives = 45/114 (39%), Gaps = 8/114 (7%)

Query: 363 ICSLIQNLSSSQLNIKRDSVMKIRML-SKENPDNRILIANNGGIRPLVQLLSYPDSKIQE 421
           +  L+  LS +    ++++   I    S    +  + + + G I PL+ LLS  D+KI +
Sbjct: 316 VPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 375

Query: 422 HTVTALLNL-------SLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAAL 468
             + A+ N+          E     I   G +  I  + ++      + S   +
Sbjct: 376 VILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 429

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.5 bits (111), Expect = 3e-06
 Identities = 40/250 (16%), Positives = 95/250 (38%), Gaps = 17/250 (6%)

Query: 363 ICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEH 422
           + +L++ L  +   +  DS   I  L+    +   ++   G +  LV+LL   +  I   
Sbjct: 190 LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTP 249

Query: 423 TVTALL-NLSLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLD-ENRVM 480
            + A+   ++  +   + +   GA+     +L N     ++ +   + +++    +    
Sbjct: 250 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 309

Query: 481 VGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRA--IKAGIIPSLLKLLEDK 538
           V N   +P LV +L     + +K+AA A+ N +   + +     +  GII  L+ LL  K
Sbjct: 310 VVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK 369

Query: 539 -------ALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVL 591
                   L  +       + L    +    I     ++ +  + ++      + + +++
Sbjct: 370 DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 429

Query: 592 LELGLNNSYF 601
                   YF
Sbjct: 430 ------EKYF 433

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.1 bits (110), Expect = 5e-06
 Identities = 23/135 (17%), Positives = 49/135 (36%), Gaps = 4/135 (2%)

Query: 487 IPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSR--AIKAGIIPSLLKLLEDKALGMV- 543
           +  +V  +   ++  +  A  A   L   +        I+AG+IP  +  L       + 
Sbjct: 15  VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQ 74

Query: 544 DEALSILQLLASH-PEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFI 602
            E+   L  +AS   E    +     I   + ++ +      E A   L  +  + S F 
Sbjct: 75  FESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFR 134

Query: 603 LAALQYGVYEHLVEI 617
              +++G  + L+ +
Sbjct: 135 DLVIKHGAIDPLLAL 149

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (126), Expect = 1e-09
 Identities = 10/38 (26%), Positives = 13/38 (34%)

Query: 274 LCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCP 311
           LC +  E   D  I   G       +  W  S  + CP
Sbjct: 25  LCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCP 62

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (124), Expect = 5e-08
 Identities = 37/225 (16%), Positives = 79/225 (35%), Gaps = 9/225 (4%)

Query: 361 EEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLV-QLLSYPDSKI 419
               +  +   ++    +  ++  +  L  EN DN        G+  LV + L    + +
Sbjct: 17  PMPPTAGEAEQAADQQEREGALELLADLC-ENMDNAADFCQLSGMHLLVGRYLEAGAAGL 75

Query: 420 QEHTVTALLNLSLDETNKRHIARE-GAIPAIIEILQNGTN-EARENSAAALFSLS-MLDE 476
           +      +   S +    +      GA+  ++ +L        R  +  A+  L    + 
Sbjct: 76  RWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEA 135

Query: 477 NRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSI-NQSNKSRAIKAGIIPSLLKLL 535
             +    L+G   L+  ++    + K  +A  L NL + +  +K      G++  L+ L+
Sbjct: 136 GLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALV 195

Query: 536 EDKALGMVDEALSILQLLASH-PEGRNEI--GRLSFIETLVEIIK 577
             +     +  L  L  L +  P+G  E     L   E L    +
Sbjct: 196 RTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQ 240

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 7e-07
 Identities = 35/236 (14%), Positives = 72/236 (30%), Gaps = 5/236 (2%)

Query: 408 LVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTN-EARENSAA 466
             +     D + +E  +  L +L  +  N     +   +  ++           R  +A 
Sbjct: 22  AGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQ 81

Query: 467 ALFSLS-MLDENRVMVGNLNGIPPLVNLLRY-GSIRGKKDAATALFNLSINQSNKSRAIK 524
            + + S  +   +  V  L  +  L+ LL        +  A  A+  L   Q        
Sbjct: 82  LIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFL 141

Query: 525 AGIIPSLLKLLE--DKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPK 582
                S+L            V  A  +  LL  HPE +  +  +  ++ LV +++     
Sbjct: 142 RLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSP 201

Query: 583 NKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK 638
             E     L  L  +    +    +  +    +   RC   +   +    L+   K
Sbjct: 202 FHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEK 257

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 2e-05
 Identities = 39/196 (19%), Positives = 69/196 (35%), Gaps = 4/196 (2%)

Query: 447 PAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVN-LLRYGSIRGKKDA 505
           P   E  Q    + RE +   L  L    +N      L+G+  LV   L  G+   +  A
Sbjct: 20  PTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRA 79

Query: 506 ATALFNLS-INQSNKSRAIKAGIIPSLLKLLEDKALGMVDE--ALSILQLLASHPEGRNE 562
           A  +   S    + + + +  G +  LL+LL+  A   V      +I  L+     G  +
Sbjct: 80  AQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQ 139

Query: 563 IGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGT 622
             RL     L+  ++    K K  +  +L  L + +          G+ + LV + R   
Sbjct: 140 FLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEH 199

Query: 623 NRGQRKANSLLQHMSK 638
           +         L  +  
Sbjct: 200 SPFHEHVLGALCSLVT 215

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.8 bits (111), Expect = 2e-07
 Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 1/62 (1%)

Query: 272 EFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSL-APNYALRN 330
              C +   I+ DPV  +    + R  I R L      CP          L +P  +  N
Sbjct: 23  SISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLN 82

Query: 331 LI 332
           ++
Sbjct: 83  IL 84

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (95), Expect = 3e-05
 Identities = 12/78 (15%), Positives = 23/78 (29%), Gaps = 5/78 (6%)

Query: 272 EFLCPVTLEIMTDPVIVAT-GQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRN 330
              C     I+ +PV +      +    +   + +    C           L  N  L +
Sbjct: 22  LLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVC---YTPAWIQDLKINRQLDS 78

Query: 331 LIVQWCEKNNVELPKKDT 348
           + +Q C K    L   + 
Sbjct: 79  M-IQLCSKLRNLLHDNEL 95

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 7e-05
 Identities = 35/208 (16%), Positives = 66/208 (31%), Gaps = 19/208 (9%)

Query: 351  GSDASSAALIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQ 410
            G     +  +E    +++  SS    +K  +   +  +S  N    +         P V 
Sbjct: 843  GHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYL---------PFVL 893

Query: 411  LLSYPDSKIQEHTVTALLNLSLDETNKRHIA--REGAIPAIIEILQNGTNEARENSAAAL 468
                   K Q   + +L  + +   +   +    E     +++  +      R   A  L
Sbjct: 894  QEITSQPKRQYLLLHSLKEI-ISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECL 952

Query: 469  FSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGII 528
              L+++D   ++       P L   L  GS   +    TA+     +       +    I
Sbjct: 953  GKLTLIDPETLL-------PRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCI 1005

Query: 529  PSLLKLLEDKALGMVDEALSILQLLASH 556
               LK LED  L +   AL      A +
Sbjct: 1006 GDFLKTLEDPDLNVRRVALVTFNSAAHN 1033

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (88), Expect = 1e-04
 Identities = 8/55 (14%), Positives = 14/55 (25%), Gaps = 8/55 (14%)

Query: 272 EFL-CPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPN 325
           +FL C         P ++    T     ++         CP          L  +
Sbjct: 5   QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQA---PWPLGAD 52

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 37.2 bits (86), Expect = 3e-04
 Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 2/38 (5%)

Query: 275 CPVTLEIMTDPVIVAT-GQTYERESIQRWLNSNHKTCP 311
           CP+ LE  ++  +       +    I RW+   + TCP
Sbjct: 8   CPICLEDPSNYSMALPCLHAFCYVCITRWIR-QNPTCP 44

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (82), Expect = 0.001
 Identities = 8/52 (15%), Positives = 13/52 (25%), Gaps = 5/52 (9%)

Query: 272 EFLCPVTLEIMTDP-----VIVATGQTYERESIQRWLNSNHKTCPKTGQILD 318
           +  CP              ++   G T     +          CP+ G  L 
Sbjct: 3   DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR 54

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	643
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.88
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.88
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.86
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.86
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	99.86
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.84
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	99.83
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	99.78
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.73
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.73
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.69
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.43
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.41
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.39
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	99.31
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.17
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	98.93
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	98.91
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	98.78
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	98.63
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	98.61
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.51
d1b3ua_	588	Constant regulatory domain of protein phosphatase	98.48
d1b3ua_	588	Constant regulatory domain of protein phosphatase	98.47
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	98.32
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	98.26
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	98.21
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.18
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	98.14
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.05
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	97.99
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	97.87
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.72
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	97.68
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	97.66
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	97.64
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	97.52
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.49
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	97.48
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	97.26
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.23
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.16
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	96.99
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	96.91
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	96.84
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	96.69
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	96.45
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	94.61
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	93.61
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	93.58
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	92.75
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	87.76

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=4e-22  Score=219.38  Aligned_cols=278  Identities=19%  Similarity=0.226  Sum_probs=239.1

Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHh-hCChHHHHHHhcC-CCHHHHHHHHHHHHhcccChhhH
Q 006494          360 IEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIAN-NGGIRPLVQLLSY-PDSKIQEHTVTALLNLSLDETNK  437 (643)
Q Consensus       360 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~-~g~i~~Lv~lL~~-~~~~~~~~a~~~L~nLs~~~~~k  437 (643)
                      ...+|.|++.|++.+..++..|+..+..+++ ++..+..+.. .|+++.|+.+|+. .+.++++.|+.+|.+|+.+++++
T Consensus        16 ~~aip~L~~lL~~~~~~v~~~A~~~l~~l~~-~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~   94 (529)
T d1jdha_          16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSK-KEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL   94 (529)
T ss_dssp             -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHT-SHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhH
Confidence            4579999999999999999999999999995 4556666654 5789999999975 57899999999999999999999


Q ss_pred             HHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHcccccc-ccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcC-
Q 006494          438 RHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDE-NRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSIN-  515 (643)
Q Consensus       438 ~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~-~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~-  515 (643)
                      ..+++.|+++.|+.+|++++++++.+|+++|.+|+...+ .+..+.+.|+|+.|+.+|++++..++..++.+|.+|+.. 
T Consensus        95 ~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~  174 (529)
T d1jdha_          95 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN  174 (529)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhh
Confidence            999999999999999999999999999999999987665 566777899999999999999999999999999999974 


Q ss_pred             CCchHHHHhcCcHHHHHHHhcc-CChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHH-----------------------
Q 006494          516 QSNKSRAIKAGIIPSLLKLLED-KALGMVDEALSILQLLASHPEGRNEIGRLSFIET-----------------------  571 (643)
Q Consensus       516 ~en~~~iv~~G~v~~Lv~lL~~-~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~-----------------------  571 (643)
                      .+++..+.+.|++++|+.++.. ....+...+..++.+++.+++.+..+.+.|+++.                       
T Consensus       175 ~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~l  254 (529)
T d1jdha_         175 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL  254 (529)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhc
Confidence            4567888899999999999976 4567888999999999988887777766555544                       


Q ss_pred             ----------------HHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHh--hCCHHHHHHHHHHH
Q 006494          572 ----------------LVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITR--CGTNRGQRKANSLL  633 (643)
Q Consensus       572 ----------------Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~--~g~~~~k~~A~~lL  633 (643)
                                      |++++.++++..++.|+.+|.+++..++..+..+.+.|+++.|+.++.  +..+..++.|...|
T Consensus       255 s~~~~~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL  334 (529)
T d1jdha_         255 SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL  334 (529)
T ss_dssp             HTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cccccchhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHh
Confidence                            444455566777888899999999988888888889999999998774  45678899999999


Q ss_pred             HHhhh
Q 006494          634 QHMSK  638 (643)
Q Consensus       634 ~~l~~  638 (643)
                      +++..
T Consensus       335 ~~l~~  339 (529)
T d1jdha_         335 RHLTS  339 (529)
T ss_dssp             HHHTS
T ss_pred             hcccc
Confidence            98864

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=6.5e-21  Score=203.17  Aligned_cols=278  Identities=20%  Similarity=0.226  Sum_probs=237.2

Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChh-hHHHHHhhCChHHHHHHhcCC-CHHHHHHHHHHHHhccc-ChhhH
Q 006494          361 EEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPD-NRILIANNGGIRPLVQLLSYP-DSKIQEHTVTALLNLSL-DETNK  437 (643)
Q Consensus       361 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~-~r~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~nLs~-~~~~k  437 (643)
                      .++..+++.|.+++++.+..|+..++++...+.. ....+.+.|++|.|+++|++. ++++|..|+++|.|++. +++.+
T Consensus        13 ~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~   92 (434)
T d1q1sc_          13 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT   92 (434)
T ss_dssp             CCHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhh
Confidence            4689999999999999999999999988643332 246788899999999999754 67899999999999975 45778


Q ss_pred             HHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHcccccc-ccchhhccCC------------------------------
Q 006494          438 RHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDE-NRVMVGNLNG------------------------------  486 (643)
Q Consensus       438 ~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~-~k~~i~~~g~------------------------------  486 (643)
                      ..+++.|+++.++.+|.+++.+.++.|+++|.+++..+. .+..+.+.|+                              
T Consensus        93 ~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~  172 (434)
T d1q1sc_          93 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN  172 (434)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred             hHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence            888899999999999999999999999999999986543 3443333333                              


Q ss_pred             -----------------hHHHHHHcccCChhhHHHHHHHHHHhhcCCCc-hHHHHhcCcHHHHHHHhccCChhhHHHHHH
Q 006494          487 -----------------IPPLVNLLRYGSIRGKKDAATALFNLSINQSN-KSRAIKAGIIPSLLKLLEDKALGMVDEALS  548 (643)
Q Consensus       487 -----------------i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en-~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~  548 (643)
                                       ++.|+.++.++++..+..|+.+|.+|+.+... ...+...|+++.|++++.+++..++..|+.
T Consensus       173 ~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~  252 (434)
T d1q1sc_         173 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR  252 (434)
T ss_dssp             HTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHH
T ss_pred             HhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhh
Confidence                             44455555566777888999999999886654 455667999999999999999999999999


Q ss_pred             HHHHHhCC-hhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHH
Q 006494          549 ILQLLASH-PEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQR  627 (643)
Q Consensus       549 iL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~  627 (643)
                      +|.+++.+ +..+..+.+.|+++.++.++.+.++..+..|+.+|.+++.+.......+.+.|+++.++.++.+++...+.
T Consensus       253 ~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~  332 (434)
T d1q1sc_         253 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQK  332 (434)
T ss_dssp             HHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHH
T ss_pred             hhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHH
Confidence            99999986 56778888899999999999999999999999999999999988888889999999999999999999999


Q ss_pred             HHHHHHHHhhh
Q 006494          628 KANSLLQHMSK  638 (643)
Q Consensus       628 ~A~~lL~~l~~  638 (643)
                      .|..+|.++..
T Consensus       333 ~a~~~l~nl~~  343 (434)
T d1q1sc_         333 EAAWAITNYTS  343 (434)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999998864

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=6e-21  Score=208.61  Aligned_cols=280  Identities=14%  Similarity=0.129  Sum_probs=251.0

Q ss_pred             hHHHHHHHHHhhcC-CCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccC-hhh
Q 006494          359 LIEEICSLIQNLSS-SQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLD-ETN  436 (643)
Q Consensus       359 ~~~~i~~Lv~~L~s-~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~  436 (643)
                      ..+.++.|+..|.+ .+..++..|++.|.+++..++.....+.+.|+++.++.+|.+++.+++..|+++|.|++.+ +.+
T Consensus       117 ~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~  196 (503)
T d1wa5b_         117 QAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY  196 (503)
T ss_dssp             HTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHH
Confidence            35678999999985 4678999999999999988888888889999999999999999999999999999999864 678


Q ss_pred             HHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccc-cchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcC
Q 006494          437 KRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDEN-RVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSIN  515 (643)
Q Consensus       437 k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~-k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~  515 (643)
                      +..+.+.|+++.++.++.+.+...+.+++++|.+|+..... .......++++.|+.++.+.+......++++|.+|+..
T Consensus       197 r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~  276 (503)
T d1wa5b_         197 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG  276 (503)
T ss_dssp             HHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccC
Confidence            88889999999999999999999999999999999876543 33344578999999999999999999999999999975


Q ss_pred             CCc-hHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCCh-hhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHH
Q 006494          516 QSN-KSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHP-EGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLE  593 (643)
Q Consensus       516 ~en-~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~-~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~  593 (643)
                      ..+ ...+++.|+++.|+.++.+++..+...|+.+|.+++.+. .....+.+.|+++.|..++.+.++..+..++++|.+
T Consensus       277 ~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~n  356 (503)
T d1wa5b_         277 PQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISN  356 (503)
T ss_dssp             CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             CchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            554 577889999999999999999999999999999999874 456667788999999999999999999999999999


Q ss_pred             hccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494          594 LGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK  638 (643)
Q Consensus       594 L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~  638 (643)
                      ++.+++.....+.+.|+++.++.++.+++..++..|.++|.++..
T Consensus       357 l~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~  401 (503)
T d1wa5b_         357 ITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASS  401 (503)
T ss_dssp             HTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HhhccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHHHh
Confidence            999999988889999999999999999999999999999998864

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.3e-21  Score=203.64  Aligned_cols=280  Identities=20%  Similarity=0.261  Sum_probs=231.2

Q ss_pred             HHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcc-cChhhHHHH
Q 006494          362 EICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLS-LDETNKRHI  440 (643)
Q Consensus       362 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs-~~~~~k~~i  440 (643)
                      .+|.||+.|++++++++..|++.|.+++..++++|..+.+.|+|+.|+++|++++++++..|+.+|.||+ .+++++..+
T Consensus         3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i   82 (457)
T d1xm9a1           3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET   82 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred             CHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            4899999999999999999999999999889999999999999999999999999999999999999998 567889999


Q ss_pred             HhcCChHHHHHHHcc-CCHHHHHHHHHHHHHcccccccc-----------------------------------------
Q 006494          441 AREGAIPAIIEILQN-GTNEARENSAAALFSLSMLDENR-----------------------------------------  478 (643)
Q Consensus       441 ~~~g~i~~Lv~lL~~-~~~~~~~~Aa~~L~~Ls~~~~~k-----------------------------------------  478 (643)
                      .+.|+++.++.++.+ .+.+++..|+++|.+++..+..+                                         
T Consensus        83 ~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  162 (457)
T d1xm9a1          83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFN  162 (457)
T ss_dssp             HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHH
T ss_pred             HHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHHHH
Confidence            999999999999975 57788888888888876533211                                         


Q ss_pred             ---------------chhh-ccCChHHHHHHcc-----------------------------------------------
Q 006494          479 ---------------VMVG-NLNGIPPLVNLLR-----------------------------------------------  495 (643)
Q Consensus       479 ---------------~~i~-~~g~i~~Lv~lL~-----------------------------------------------  495 (643)
                                     ..+. ..|+++.|+.++.                                               
T Consensus       163 a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (457)
T d1xm9a1         163 ATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYT  242 (457)
T ss_dssp             HHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-----
T ss_pred             HHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhh
Confidence                           1111 1345565555442                                               


Q ss_pred             ----------------------------------------------------cCChhhHHHHHHHHHHhhcCCCc-----
Q 006494          496 ----------------------------------------------------YGSIRGKKDAATALFNLSINQSN-----  518 (643)
Q Consensus       496 ----------------------------------------------------s~~~~~k~~A~~aL~nLs~~~en-----  518 (643)
                                                                          +.++..+..+..++.+++.....     
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~  322 (457)
T d1xm9a1         243 EKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGM  322 (457)
T ss_dssp             -----------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHH
T ss_pred             HHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHHH
Confidence                                                                11233445666777777764442     


Q ss_pred             -hHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhc------CChHHHHHHHHHH
Q 006494          519 -KSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKN------GTPKNKECATSVL  591 (643)
Q Consensus       519 -~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~------~s~~~ke~A~~~L  591 (643)
                       +..+.+.|+++.|++++.+++..++..++.+|.+|+.+++++..+.+ ++++.++.+|..      .+++.+..|+.+|
T Consensus       323 ~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~~~~i~~-~~i~~li~~L~~~~~~~~~~~~v~~~a~~~L  401 (457)
T d1xm9a1         323 SQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGN-QVFPEVTRLLTSHTGNTSNSEDILSSACYTV  401 (457)
T ss_dssp             HHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHH-HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHH
T ss_pred             HHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhHHHHHHH-hhHHHHHHHHhccccCcCCcHHHHHHHHHHH
Confidence             34445689999999999999999999999999999999999988865 689999999864      2357889999999


Q ss_pred             HHhccCCHHHHHHHHHcCcHHHHHHHHhh-CCHHHHHHHHHHHHHhhhccCC
Q 006494          592 LELGLNNSYFILAALQYGVYEHLVEITRC-GTNRGQRKANSLLQHMSKREHI  642 (643)
Q Consensus       592 ~~L~~~~~~~~~~~~~~g~i~~L~~ll~~-g~~~~k~~A~~lL~~l~~~~e~  642 (643)
                      .+++..+++.+..+.+.|+++.|+.++.+ +++.+++.|..+|.+|+.+.|+
T Consensus       402 ~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~~~  453 (457)
T d1xm9a1         402 RNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKEL  453 (457)
T ss_dssp             HHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTC
T ss_pred             HHHhcCCHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcCHhh
Confidence            99999999999989999999999999876 4789999999999999877664

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=3.6e-20  Score=202.37  Aligned_cols=278  Identities=17%  Similarity=0.212  Sum_probs=246.2

Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHHHHHhh-hhChhhHHHHHhhCChHHHHHHhcCC-CHHHHHHHHHHHHhcccCh-hhH
Q 006494          361 EEICSLIQNLSSSQLNIKRDSVMKIRMLS-KENPDNRILIANNGGIRPLVQLLSYP-DSKIQEHTVTALLNLSLDE-TNK  437 (643)
Q Consensus       361 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La-~~~~~~r~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~nLs~~~-~~k  437 (643)
                      ..++.+++.+.+.+.+.+..|+..++.+. ..+......+.+.|+++.|+.+|+.. +..+|..|+++|.|++..+ ...
T Consensus        76 ~~l~~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~  155 (503)
T d1wa5b_          76 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT  155 (503)
T ss_dssp             CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence            45888999999999999999999999765 33344456788999999999999854 6789999999999998654 555


Q ss_pred             HHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHcccc-ccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCC
Q 006494          438 RHIAREGAIPAIIEILQNGTNEARENSAAALFSLSML-DENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQ  516 (643)
Q Consensus       438 ~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~  516 (643)
                      ..+.+.|+++.++.+|.+++.+++..|+++|.+|+.. .+++..+...|+++.|+.++.+.+..++..++++|.||+.+.
T Consensus       156 ~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~  235 (503)
T d1wa5b_         156 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGK  235 (503)
T ss_dssp             HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCS
T ss_pred             HHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCC
Confidence            6677999999999999999999999999999999865 468889999999999999999999999999999999999865


Q ss_pred             Cc-hHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC-hhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHh
Q 006494          517 SN-KSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH-PEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLEL  594 (643)
Q Consensus       517 en-~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L  594 (643)
                      .. .......|+++.|+.++.+.+..+...++++|.+|+.. ++....+.+.|+++.++.++.+.++..+..|+.+|.++
T Consensus       236 ~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl  315 (503)
T d1wa5b_         236 KPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI  315 (503)
T ss_dssp             SSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHH
Confidence            54 34445678999999999998999999999999999986 56677888899999999999999999999999999999


Q ss_pred             ccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494          595 GLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK  638 (643)
Q Consensus       595 ~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~  638 (643)
                      +.+.......+.+.|+++.|..++.+.++..++.|.++|.++..
T Consensus       316 ~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~  359 (503)
T d1wa5b_         316 VTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITA  359 (503)
T ss_dssp             TTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhh
Confidence            99988888888899999999999999999999999999999864

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=2.5e-20  Score=198.62  Aligned_cols=280  Identities=18%  Similarity=0.216  Sum_probs=237.2

Q ss_pred             hHHHHHHHHHhhcC-CCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccC-hhh
Q 006494          359 LIEEICSLIQNLSS-SQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLD-ETN  436 (643)
Q Consensus       359 ~~~~i~~Lv~~L~s-~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~  436 (643)
                      ..+.++.|++.|++ .++++|..|++.|.+++..+++.+..+.+.|+++.|+.+|.+++.++++.|+.+|.|++.+ +..
T Consensus        54 ~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~  133 (434)
T d1q1sc_          54 RAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF  133 (434)
T ss_dssp             HTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHH
Confidence            34679999999975 4678999999999999988888999999999999999999999999999999999999864 444


Q ss_pred             HHHHHhcCChHHHHHHH-----------------------------------------------ccCCHHHHHHHHHHHH
Q 006494          437 KRHIAREGAIPAIIEIL-----------------------------------------------QNGTNEARENSAAALF  469 (643)
Q Consensus       437 k~~i~~~g~i~~Lv~lL-----------------------------------------------~~~~~~~~~~Aa~~L~  469 (643)
                      +..+.+.|+++.++.++                                               .+++++++..++++|.
T Consensus       134 ~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~  213 (434)
T d1q1sc_         134 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAIS  213 (434)
T ss_dssp             HHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhc
Confidence            55555555555554444                                               4445556677888888


Q ss_pred             Hcccccc-ccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCC-CchHHHHhcCcHHHHHHHhccCChhhHHHHH
Q 006494          470 SLSMLDE-NRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQ-SNKSRAIKAGIIPSLLKLLEDKALGMVDEAL  547 (643)
Q Consensus       470 ~Ls~~~~-~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~-en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al  547 (643)
                      +|+..+. ....+...|+++.|+.++.+++..++..|+.+|.+++... +.+..+++.|+++.|+.++.+.+..++..|+
T Consensus       214 ~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~  293 (434)
T d1q1sc_         214 YLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEAT  293 (434)
T ss_dssp             HHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHH
T ss_pred             ccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHH
Confidence            8876554 4455667899999999999999999999999999999855 4577888999999999999998899999999


Q ss_pred             HHHHHHhCC-hhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccC-CHHHHHHHHHcCcHHHHHHHHhhCCHHH
Q 006494          548 SILQLLASH-PEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLN-NSYFILAALQYGVYEHLVEITRCGTNRG  625 (643)
Q Consensus       548 ~iL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~-~~~~~~~~~~~g~i~~L~~ll~~g~~~~  625 (643)
                      .+|.+|+.+ ++....+.+.|+++.++.++.+.++..+..|+.+|.+++.. +.+....+.+.|+++.|+.++..++++.
T Consensus       294 ~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~  373 (434)
T d1q1sc_         294 WTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKI  373 (434)
T ss_dssp             HHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHH
T ss_pred             HHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHH
Confidence            999999986 56777788899999999999999999999999999999875 4566677888999999999999999999


Q ss_pred             HHHHHHHHHHhhh
Q 006494          626 QRKANSLLQHMSK  638 (643)
Q Consensus       626 k~~A~~lL~~l~~  638 (643)
                      ...+...|..|.+
T Consensus       374 ~~~~l~~l~~ll~  386 (434)
T d1q1sc_         374 IQVILDAISNIFQ  386 (434)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999988887754

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.86  E-value=1.2e-22  Score=163.94  Aligned_cols=77  Identities=57%  Similarity=1.091  Sum_probs=73.2

Q ss_pred             CCCCCCcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCchhhhHHHHHHHHhhcccc
Q 006494          266 TMLVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLIVQWCEKNNVE  342 (643)
Q Consensus       266 ~~~~p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~~~~~~  342 (643)
                      ++++|++|.||||+++|+|||+++|||+|||.||++|+..+..+||.|+.++...++.||..||++|++|+++||++
T Consensus         2 ~peiP~~l~CpIc~~~m~dPV~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~~l~pN~~L~~~I~~~~~~~~~e   78 (78)
T d1t1ha_           2 SPEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGIE   78 (78)
T ss_dssp             CCCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCCC
T ss_pred             CCCCCccCCCcCcCchhhCceEccCCCcchHHHHHHHHHHCCCCCCcccccCCcccccchHHHHHHHHHHHHHhCcC
Confidence            35799999999999999999999999999999999999987788999999999999999999999999999999974

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=5.1e-20  Score=202.26  Aligned_cols=278  Identities=19%  Similarity=0.161  Sum_probs=242.0

Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccC-hhhHH
Q 006494          360 IEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLD-ETNKR  438 (643)
Q Consensus       360 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~-~~~k~  438 (643)
                      .+.++.|+..|++++++++..|+..|.+++.+++..+..+.+.|+|+.|+.+|++++.+++..++.+|.+++.. +.++.
T Consensus       100 ~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~  179 (529)
T d1jdha_         100 SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL  179 (529)
T ss_dssp             TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHH
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999865 55667


Q ss_pred             HHHhcCChHHHHHHHccC-CHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCC
Q 006494          439 HIAREGAIPAIIEILQNG-TNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQS  517 (643)
Q Consensus       439 ~i~~~g~i~~Lv~lL~~~-~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~e  517 (643)
                      .+...|+++.++.+++.+ ....+..+++++.+++.+++++..+.+.|+++.|+.++.+++.+.+..++.+|.+++....
T Consensus       180 ~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~  259 (529)
T d1jdha_         180 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT  259 (529)
T ss_dssp             HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCT
T ss_pred             HHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhcccccc
Confidence            777999999999999865 4778899999999999999999999999999999999999999999999999999986443


Q ss_pred             chHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC-hhhHHHHHhcCcHHHHHHHHhc--CChHHHHHHHHHHHHh
Q 006494          518 NKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH-PEGRNEIGRLSFIETLVEIIKN--GTPKNKECATSVLLEL  594 (643)
Q Consensus       518 n~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~--~s~~~ke~A~~~L~~L  594 (643)
                      .  .....|+++.|++++.+++..++..|+.+|++|+.+ ++.+..+.+.++++.++.++..  .++..++.|+.+|.++
T Consensus       260 ~--~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l  337 (529)
T d1jdha_         260 K--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHL  337 (529)
T ss_dssp             T--CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             c--hhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcc
Confidence            3  223468999999999988899999999999999975 6778888889999999998853  5678899999999999


Q ss_pred             ccCCH---HHHHHHHHcCcHHHHHHHHhhCC-HHHHHHHHHHHHHhhhc
Q 006494          595 GLNNS---YFILAALQYGVYEHLVEITRCGT-NRGQRKANSLLQHMSKR  639 (643)
Q Consensus       595 ~~~~~---~~~~~~~~~g~i~~L~~ll~~g~-~~~k~~A~~lL~~l~~~  639 (643)
                      +....   .....+...|+++.|+.++..++ ......+..+|+++...
T Consensus       338 ~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~  386 (529)
T d1jdha_         338 TSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC  386 (529)
T ss_dssp             TSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS
T ss_pred             cchhhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcchh
Confidence            97653   23444567899999999987765 45677888899888654

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=1e-21  Score=159.09  Aligned_cols=75  Identities=27%  Similarity=0.445  Sum_probs=71.3

Q ss_pred             CCCCCcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCchhhhHHHHHHHHhhccc
Q 006494          267 MLVPHEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLIVQWCEKNNV  341 (643)
Q Consensus       267 ~~~p~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~~~~~  341 (643)
                      .++|++|.||||+++|+|||+++|||||||.||++|+..++.+||.|++++...++.||..|+++|++|+.+||.
T Consensus         2 ~eiP~~l~CpIc~~l~~dPv~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~~l~pN~~L~~~I~~~l~~~~~   76 (80)
T d2c2la2           2 RDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGW   76 (80)
T ss_dssp             CCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSC
T ss_pred             CCCCccccCcCcCchhhhhcccCCcCeecHHHHHHHHhcCCccCCCccccccccccccHHHHHHHHHHHHHHCCC
Confidence            368999999999999999999999999999999999998788999999999999999999999999999999875

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=6.8e-20  Score=153.62  Aligned_cols=74  Identities=30%  Similarity=0.438  Sum_probs=68.3

Q ss_pred             CCCCCCcccCccCcccccCCeecCCc-ccccHHhHHHHHhcCCCCCCCCCcccCCCCCCchhhhHHHHHHHHhhcc
Q 006494          266 TMLVPHEFLCPVTLEIMTDPVIVATG-QTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLIVQWCEKNN  340 (643)
Q Consensus       266 ~~~~p~~f~Cpi~~~~m~dPv~~~~g-~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~~~~  340 (643)
                      ..++|++|.||||+++|+|||+++|| |||||.||.+|+.. +.+||.|++++...+++||..||.+|.+|+..+.
T Consensus        16 ~~~~P~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~~-~~~~P~~~~~l~~~~L~pN~~Lr~~I~~~~~~~~   90 (98)
T d1wgma_          16 YADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERK   90 (98)
T ss_dssp             CCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHST
T ss_pred             hcCCcHHhCCcCchhHHHHHHhcccccchhhHHHHHHHHHh-cCCcccccccccchhhcchHHHHHHHHHHHHHHH
Confidence            35789999999999999999999876 58999999999987 5689999999999999999999999999998765

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.4e-16  Score=159.03  Aligned_cols=191  Identities=18%  Similarity=0.222  Sum_probs=169.6

Q ss_pred             CHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHH-HhcCCCHHHHHHHHHHHHhcccC-hhhHHHHHhcCChHHHHH
Q 006494          374 QLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQ-LLSYPDSKIQEHTVTALLNLSLD-ETNKRHIAREGAIPAIIE  451 (643)
Q Consensus       374 ~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~-lL~~~~~~~~~~a~~~L~nLs~~-~~~k~~i~~~g~i~~Lv~  451 (643)
                      +.+.+..|+..|..|+ ++.+++..+...|++++|+. +|.+++++++..|+.+|.+++.+ +..+..+.+.|+++.|+.
T Consensus        30 ~~~~~~~Al~~L~~L~-~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~  108 (264)
T d1xqra1          30 DQQEREGALELLADLC-ENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLR  108 (264)
T ss_dssp             HHHHHHHHHHHHHHHH-TSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH-cCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence            5577888999999999 67888999999999999886 78889999999999999999974 677888889999999999


Q ss_pred             HHcc-CCHHHHHHHHHHHHHccccc-cccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhc-CCCchHHHHhcCcH
Q 006494          452 ILQN-GTNEARENSAAALFSLSMLD-ENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSI-NQSNKSRAIKAGII  528 (643)
Q Consensus       452 lL~~-~~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~-~~en~~~iv~~G~v  528 (643)
                      +|.+ .++.++..++++|.+++... .++..+...|+++.|+.++++++..++..++.+|.||+. +++++..+++.|++
T Consensus       109 lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v  188 (264)
T d1xqra1         109 LLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMV  188 (264)
T ss_dssp             HHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHH
T ss_pred             HhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhH
Confidence            9975 57889999999999998655 477788889999999999999999999999999999986 67789999999999


Q ss_pred             HHHHHHhccCChhhHHHHHHHHHHHhCC-hhhHHHHHh
Q 006494          529 PSLLKLLEDKALGMVDEALSILQLLASH-PEGRNEIGR  565 (643)
Q Consensus       529 ~~Lv~lL~~~~~~~~~~Al~iL~nLa~~-~~~~~~i~~  565 (643)
                      +.|+.+|.++++.+++.|+.+|.+|+.. +.....+..
T Consensus       189 ~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~  226 (264)
T d1xqra1         189 QQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECRE  226 (264)
T ss_dssp             HHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            9999999999999999999999999986 555555544

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=4.5e-17  Score=162.69  Aligned_cols=193  Identities=16%  Similarity=0.154  Sum_probs=173.2

Q ss_pred             CCHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHH-HHccCCHHHHHHHHHHHHHccccc-cccchhhccCChHHHHH
Q 006494          415 PDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIE-ILQNGTNEARENSAAALFSLSMLD-ENRVMVGNLNGIPPLVN  492 (643)
Q Consensus       415 ~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~-lL~~~~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~  492 (643)
                      .+.+.+..|+.+|.+|+.+.+|+..+...|++++++. ++.+++.++|..|+.+|.+++.++ ..+..+.+.|+++.|+.
T Consensus        29 ~~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~  108 (264)
T d1xqra1          29 ADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLR  108 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence            3567888999999999999999999999999999986 677889999999999999999755 57888888999999999


Q ss_pred             Hccc-CChhhHHHHHHHHHHhhcCC-CchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCC-hhhHHHHHhcCcH
Q 006494          493 LLRY-GSIRGKKDAATALFNLSINQ-SNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASH-PEGRNEIGRLSFI  569 (643)
Q Consensus       493 lL~s-~~~~~k~~A~~aL~nLs~~~-en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~-~~~~~~i~~~g~i  569 (643)
                      ++.+ .++.++..|+.+|.+|+.+. +++..+...|+++.|+++|.+++..++..++.+|.+|+.. ++.+..+.+.|++
T Consensus       109 lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v  188 (264)
T d1xqra1         109 LLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMV  188 (264)
T ss_dssp             HHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHH
T ss_pred             HhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhH
Confidence            9975 47789999999999999754 5677888999999999999999999999999999999864 8899999999999


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHH
Q 006494          570 ETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQ  607 (643)
Q Consensus       570 ~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~  607 (643)
                      +.|+.++.+.++..++.|+.+|.+|+...+.....+..
T Consensus       189 ~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~  226 (264)
T d1xqra1         189 QQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECRE  226 (264)
T ss_dssp             HHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            99999999999999999999999999988887776654

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1e-15  Score=160.81  Aligned_cols=237  Identities=23%  Similarity=0.282  Sum_probs=189.8

Q ss_pred             CChHHHHHHhcCCCHHHHHHHHHHHHhccc-ChhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccc-cccccch
Q 006494          403 GGIRPLVQLLSYPDSKIQEHTVTALLNLSL-DETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSM-LDENRVM  480 (643)
Q Consensus       403 g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~-~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~-~~~~k~~  480 (643)
                      +.||.|+.+|+++++++|..|+++|.||+. ++++|..+.+.|+|++|+++|++++++++..|+++|.+|+. +++++..
T Consensus         2 ~~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~   81 (457)
T d1xm9a1           2 LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE   81 (457)
T ss_dssp             CCHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             CCHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            468999999999999999999999999985 67899999999999999999999999999999999999985 4568899


Q ss_pred             hhccCChHHHHHHccc-CChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHh---------------ccCChhhHH
Q 006494          481 VGNLNGIPPLVNLLRY-GSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLL---------------EDKALGMVD  544 (643)
Q Consensus       481 i~~~g~i~~Lv~lL~s-~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL---------------~~~~~~~~~  544 (643)
                      +.+.|+++.|+.++.+ .+..++..|+.+|.+|+.....+......|..+.+..++               ...+..++.
T Consensus        82 i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  161 (457)
T d1xm9a1          82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF  161 (457)
T ss_dssp             HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred             HHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHHH
Confidence            9999999999999865 577899999999999999888887777765544443332               123567788


Q ss_pred             HHHHHHHHHhCChhhHHHHHh-cCcHHHHHHHHh----------------------------------------------
Q 006494          545 EALSILQLLASHPEGRNEIGR-LSFIETLVEIIK----------------------------------------------  577 (643)
Q Consensus       545 ~Al~iL~nLa~~~~~~~~i~~-~g~i~~Lv~lL~----------------------------------------------  577 (643)
                      .++.+|.+++.+++++..+.. .|+++.++.++.                                              
T Consensus       162 ~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (457)
T d1xm9a1         162 NATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY  241 (457)
T ss_dssp             HHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----
T ss_pred             HHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhh
Confidence            899999999888776666554 355666655542                                              


Q ss_pred             ----------------------------------------------------c-CChHHHHHHHHHHHHhccCCHH----
Q 006494          578 ----------------------------------------------------N-GTPKNKECATSVLLELGLNNSY----  600 (643)
Q Consensus       578 ----------------------------------------------------~-~s~~~ke~A~~~L~~L~~~~~~----  600 (643)
                                                                          . .++..++.+..++..++.....    
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~  321 (457)
T d1xm9a1         242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG  321 (457)
T ss_dssp             ------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHH
T ss_pred             hHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHH
Confidence                                                                1 2345566777777777765431    


Q ss_pred             -HHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhhc
Q 006494          601 -FILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSKR  639 (643)
Q Consensus       601 -~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~~  639 (643)
                       ....+.+.|+++.|+.++.++++.++..|..+|.+|...
T Consensus       322 ~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~  361 (457)
T d1xm9a1         322 MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH  361 (457)
T ss_dssp             HHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhC
Confidence             223344579999999999999999999999999999754

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.43  E-value=1.3e-14  Score=107.78  Aligned_cols=52  Identities=15%  Similarity=0.365  Sum_probs=47.2

Q ss_pred             ccCccCcccccCCeec-CCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCch
Q 006494          273 FLCPVTLEIMTDPVIV-ATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPN  325 (643)
Q Consensus       273 f~Cpi~~~~m~dPv~~-~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn  325 (643)
                      +.||||+++|+|||++ .|||+||+.||.+|+.. +.+||.|++++...+++|.
T Consensus         1 l~C~Ic~~~~~~Pv~~~~cGh~fc~~cI~~~l~~-~~~CP~c~~~l~~~dLipi   53 (56)
T d2baya1           1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVEI   53 (56)
T ss_dssp             CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGGCEEC
T ss_pred             CCCccCCchHHhcCccCCCCCcccHHHHHHHHhh-ccCCCccCCcCCHHhceeC
Confidence            4699999999999987 59999999999999997 5689999999998888774

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.41  E-value=6.5e-14  Score=112.98  Aligned_cols=62  Identities=23%  Similarity=0.339  Sum_probs=53.0

Q ss_pred             CcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCC-chhhhHHHH
Q 006494          271 HEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLA-PNYALRNLI  332 (643)
Q Consensus       271 ~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~-pn~~lr~lI  332 (643)
                      ++|.||||+++|.|||+++|||+||+.||++|++.++.+||.|+.++...++. |...+.+.+
T Consensus        22 ~~l~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~~l~~P~~~~l~~l   84 (86)
T d1rmda2          22 KSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNIL   84 (86)
T ss_dssp             HHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHH
T ss_pred             cCcCCccCCcchhcceecCCCChhhHHHHHHHHhhCCCcCcccCCCCChhhccCHHHHHHHHh
Confidence            44699999999999999999999999999999997778999999999876665 565555543

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=6.7e-14  Score=118.24  Aligned_cols=67  Identities=19%  Similarity=0.404  Sum_probs=60.1

Q ss_pred             CcccCccCcccccCCeecCCcccccHHhHHHHHhcC--CCCCCCCCcccCCCCCCchhhhHHHHHHHHh
Q 006494          271 HEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSN--HKTCPKTGQILDHLSLAPNYALRNLIVQWCE  337 (643)
Q Consensus       271 ~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~--~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~  337 (643)
                      +.+.||||+++|.+||+++|||+||+.||.+|+...  ...||.|+.++...++.||..++.+++++..
T Consensus        20 ~~l~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~ve~l~~   88 (103)
T d1jm7a_          20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLK   88 (103)
T ss_dssp             HHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHH
T ss_pred             cCcCCCccCchhCCeEEcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCChhhCCcCHHHHHHHHHHHH
Confidence            468899999999999999999999999999999753  3579999999999999999999998887743

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1.8e-13  Score=114.25  Aligned_cols=66  Identities=15%  Similarity=0.250  Sum_probs=59.2

Q ss_pred             CCCcccCccCcccccCCeec-CCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCchhhhHHHHHHHHh
Q 006494          269 VPHEFLCPVTLEIMTDPVIV-ATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAPNYALRNLIVQWCE  337 (643)
Q Consensus       269 ~p~~f~Cpi~~~~m~dPv~~-~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~pn~~lr~lI~~w~~  337 (643)
                      +++.+.||||.++|.|||++ +|||+||+.||.+|+..   .||.|+.++...++.||..++.+|..+..
T Consensus        19 l~~~l~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~---~CP~Cr~~~~~~~l~~n~~l~~lv~~~~~   85 (97)
T d1jm7b_          19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGT---GCPVCYTPAWIQDLKINRQLDSMIQLCSK   85 (97)
T ss_dssp             HHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTT---BCSSSCCBCSCSSCCCCHHHHHHHHHHHH
T ss_pred             hhhcCCCccCCchhhcCceeCCCCCchhHHHHHHHHhc---cccccCCcCchhhCcccHHHHHHHHHHHH
Confidence            35779999999999999975 89999999999999853   59999999999999999999999987754

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=9.8e-12  Score=98.96  Aligned_cols=50  Identities=20%  Similarity=0.284  Sum_probs=45.5

Q ss_pred             cccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCC
Q 006494          272 EFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLS  321 (643)
Q Consensus       272 ~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~  321 (643)
                      ...||||++.+.|||+++|||+||+.||.+|+..++.+||+||..+....
T Consensus        23 ~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~~   72 (79)
T d1fbva4          23 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE   72 (79)
T ss_dssp             TTBCTTTSSSBCCEECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCCCCC
T ss_pred             CCCCccCCCcCCCeEEeCCCCeeeHHHHHHHHHHCcCcCCCCCcCccCCc
Confidence            34699999999999999999999999999999977789999999998654

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=8e-11  Score=86.57  Aligned_cols=50  Identities=12%  Similarity=0.083  Sum_probs=42.9

Q ss_pred             CcccCccCcccccCCeecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCCCc
Q 006494          271 HEFLCPVTLEIMTDPVIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSLAP  324 (643)
Q Consensus       271 ~~f~Cpi~~~~m~dPv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l~p  324 (643)
                      +.+.||||++.+.||++++|||+||+.||++|    ..+||.|+++++...-.|
T Consensus         5 ~~l~C~IC~~~~~~p~~lpCgH~fC~~Ci~~~----~~~CP~Cr~~~~~~~~~~   54 (56)
T d1bora_           5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPLGADTP   54 (56)
T ss_dssp             CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSCCSSCC
T ss_pred             CCCCCcccCcccCCCEEecCCCHHhHHHHHcC----CCcCcCCCCcccCCCCCC
Confidence            34699999999999999999999999999865    568999999988655444

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=3.1e-10  Score=86.52  Aligned_cols=52  Identities=15%  Similarity=0.284  Sum_probs=43.1

Q ss_pred             CcccCccCcccccCC-----eecCCcccccHHhHHHHHhcCCCCCCCCCcccCCCCC
Q 006494          271 HEFLCPVTLEIMTDP-----VIVATGQTYERESIQRWLNSNHKTCPKTGQILDHLSL  322 (643)
Q Consensus       271 ~~f~Cpi~~~~m~dP-----v~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~~~l  322 (643)
                      ++..||||++.+..+     ++++|||+||+.||.+|+..++..||.||+++...++
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~~~~   58 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF   58 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred             CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCcccccc
Confidence            567899999876432     5679999999999999998777789999999876543

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=98.78  E-value=1.4e-09  Score=83.58  Aligned_cols=43  Identities=23%  Similarity=0.526  Sum_probs=39.2

Q ss_pred             CccCcccccCCee-cCCcccccHHhHHHHHhcCCCCCCCCCcccC
Q 006494          275 CPVTLEIMTDPVI-VATGQTYERESIQRWLNSNHKTCPKTGQILD  318 (643)
Q Consensus       275 Cpi~~~~m~dPv~-~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~  318 (643)
                      ||||++.+.+|++ ++|||+|+..||.+|++. +.+||.||.++.
T Consensus         8 C~IC~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~-~~~CP~CR~~i~   51 (68)
T d1chca_           8 CPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVE   51 (68)
T ss_dssp             CSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCC
T ss_pred             CccCCcCccCCcEEeCCCCcCcHHHHHHHHHh-CCcCCCCCcchH
Confidence            9999999998865 799999999999999997 578999998875

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=7.7e-09  Score=74.71  Aligned_cols=46  Identities=17%  Similarity=0.239  Sum_probs=39.1

Q ss_pred             cCccCcccccC----CeecCCcccccHHhHHHHHhcCCCCCCCCCcccCC
Q 006494          274 LCPVTLEIMTD----PVIVATGQTYERESIQRWLNSNHKTCPKTGQILDH  319 (643)
Q Consensus       274 ~Cpi~~~~m~d----Pv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~~  319 (643)
                      -||||++-|.+    +++.+|||+|++.||.+|+..++.+||+||+++..
T Consensus         2 eCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~~   51 (52)
T d1ur6b_           2 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE   51 (52)
T ss_dssp             EETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred             CCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCCC
Confidence            49999998854    34458999999999999999777789999998864

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=98.61  E-value=8.4e-09  Score=75.33  Aligned_cols=48  Identities=27%  Similarity=0.566  Sum_probs=40.2

Q ss_pred             CCCcccCccCcccccCC---eec-CCcccccHHhHHHHHhcCCCCCCCCCccc
Q 006494          269 VPHEFLCPVTLEIMTDP---VIV-ATGQTYERESIQRWLNSNHKTCPKTGQIL  317 (643)
Q Consensus       269 ~p~~f~Cpi~~~~m~dP---v~~-~~g~t~~r~~I~~w~~~~~~~cP~~~~~l  317 (643)
                      +.++..||||++-+.+.   +.+ +|||.|+..||.+|+.. +.+||.||.++
T Consensus         2 ~ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~-~~~CP~CR~~i   53 (55)
T d1iyma_           2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTV   53 (55)
T ss_dssp             CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCS
T ss_pred             CCCCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHh-CCcCCCCCCEe
Confidence            34677899999999753   334 69999999999999987 67999999875

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.51  E-value=4e-06  Score=81.09  Aligned_cols=230  Identities=12%  Similarity=0.012  Sum_probs=147.7

Q ss_pred             HHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHH
Q 006494          362 EICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIA  441 (643)
Q Consensus       362 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~  441 (643)
                      ....|++.|++.++.++..|+..|..+..           ..+++.|+.+++++++.++..|+.+|..+.........+ 
T Consensus        20 ~~~~L~~~L~d~~~~vR~~A~~~L~~~~~-----------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~~~-   87 (276)
T d1oyza_          20 NDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNV-   87 (276)
T ss_dssp             CHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHH-
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHhhCC-----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccccch-
Confidence            45678899999999999999999887642           235789999999999999999999999887544433322 


Q ss_pred             hcCChHHHH-HHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchH
Q 006494          442 REGAIPAII-EILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKS  520 (643)
Q Consensus       442 ~~g~i~~Lv-~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~  520 (643)
                          ++.+. .++++.++.++..++.+|..+......    .....++.+...+.+.+..++..|+.++....       
T Consensus        88 ----~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~----~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~-------  152 (276)
T d1oyza_          88 ----FNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAISVIN-------  152 (276)
T ss_dssp             ----HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--------
T ss_pred             ----HHHHHHHHhcCCChhHHHHHHHHHHHHccccch----hhHHHHHHHHHHhcCcchHHHHHHHHHHhhcc-------
Confidence                22333 345677899999999999887543221    11234566677777777777777766655432       


Q ss_pred             HHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChh----------------hHH-------HHHhcCcHHHHHHHHh
Q 006494          521 RAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPE----------------GRN-------EIGRLSFIETLVEIIK  577 (643)
Q Consensus       521 ~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~----------------~~~-------~i~~~g~i~~Lv~lL~  577 (643)
                         ....++.+..++...+..+...+..++........                .+.       .+....+++.|+..+.
T Consensus       153 ---~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~L~~~l~  229 (276)
T d1oyza_         153 ---DKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELK  229 (276)
T ss_dssp             -----CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCGGGHHHHHHHHT
T ss_pred             ---hHHHHHHHHHhcccccchhhhhHHHHHHhhhccccccchhhhhhhhhhhhhhhhhhccccchhhhhhhHHHHHHHhC
Confidence               12344444555444444433333333333222110                000       0112356788888876


Q ss_pred             cCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhC-CHHHHHHHHHHHH
Q 006494          578 NGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCG-TNRGQRKANSLLQ  634 (643)
Q Consensus       578 ~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g-~~~~k~~A~~lL~  634 (643)
                      +  +..+..|+.+|..+..           .++++.|..++.+. +..++..|...|+
T Consensus       230 d--~~vr~~a~~aL~~ig~-----------~~~~~~L~~~l~~~~d~~vr~~A~~~L~  274 (276)
T d1oyza_         230 K--NTVYDDIIEAAGELGD-----------KTLLPVLDTMLYKFDDNEIITSAIDKLK  274 (276)
T ss_dssp             S--SSCCHHHHHHHHHHCC-----------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred             C--hHHHHHHHHHHHHcCC-----------HHHHHHHHHHHccCCCHHHHHHHHHHHc
Confidence            4  4467788888877642           35889999888664 6788888887663

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=1.4e-06  Score=94.74  Aligned_cols=264  Identities=13%  Similarity=0.091  Sum_probs=180.1

Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccC--hhhHH
Q 006494          361 EEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLD--ETNKR  438 (643)
Q Consensus       361 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~--~~~k~  438 (643)
                      ..++.+.+.+.+.++.+|..++..+..+++.-..   .......++.+..+++++++.++..|+.++..++..  +... 
T Consensus       164 ~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~~~-  239 (588)
T d1b3ua_         164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL---DNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDL-  239 (588)
T ss_dssp             HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH---HHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHH-
T ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcH---HHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCHHHH-
Confidence            4456666777888999999999999998864322   122345677888899999999999999999887632  2221 


Q ss_pred             HHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcC--C
Q 006494          439 HIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSIN--Q  516 (643)
Q Consensus       439 ~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~--~  516 (643)
                         ....++.+..++.+.++.+|..++.+|..+...-.  ..+.....++.+..++.+.+..++..|+.++..++..  .
T Consensus       240 ---~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~--~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~  314 (588)
T d1b3ua_         240 ---EALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVG--PEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSA  314 (588)
T ss_dssp             ---HHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC--HHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCT
T ss_pred             ---HHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhh--hhhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhh
Confidence               22357888888888899999999999988863211  1123345788999999999999999999999988753  3


Q ss_pred             CchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhcc
Q 006494          517 SNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGL  596 (643)
Q Consensus       517 en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~  596 (643)
                      .......-...++.+...+.+.+..+...+..++..++..-. ..... ...+|.+..++.+.++..+..++..+..++.
T Consensus       315 ~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~-~~~~~-~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~  392 (588)
T d1b3ua_         315 DCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILG-KDNTI-EHLLPLFLAQLKDECPEVRLNIISNLDCVNE  392 (588)
T ss_dssp             TTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHC-HHHHH-HHTHHHHHHHHTCSCHHHHHHHHTTCHHHHH
T ss_pred             hhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccc-hhHHH-HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHh
Confidence            334443445678888888888777787777766666553211 11111 2457777778877777777777776655553


Q ss_pred             CCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494          597 NNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK  638 (643)
Q Consensus       597 ~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~  638 (643)
                      .-+..   .....+++.+..++.+.+.+.|..+...+..+..
T Consensus       393 ~~~~~---~~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~  431 (588)
T d1b3ua_         393 VIGIR---QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAG  431 (588)
T ss_dssp             HSCHH---HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             hcchh---hhhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            21110   1112356667777777777777777777666543

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=2.9e-06  Score=92.05  Aligned_cols=261  Identities=13%  Similarity=0.059  Sum_probs=181.7

Q ss_pred             HHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccC--hhhHHH
Q 006494          362 EICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLD--ETNKRH  439 (643)
Q Consensus       362 ~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~--~~~k~~  439 (643)
                      -++.+...+...+..+|..|+..+..+....+..  . ...-.+|.+.++..++....+..|+..+..+...  +..+..
T Consensus        88 ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~~--~-~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~~~~~~  164 (588)
T d1b3ua_          88 LLPPLESLATVEETVVRDKAVESLRAISHEHSPS--D-LEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAE  164 (588)
T ss_dssp             GHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHH--H-HHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHHH
T ss_pred             HHHHHHHHccCCCHHHHHHHHHHHHHHHHhCCHH--H-HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            3455566677788899999999999887543221  1 2233456566666766566777777777666532  233332


Q ss_pred             HHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCch
Q 006494          440 IAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNK  519 (643)
Q Consensus       440 i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~  519 (643)
                           .++.+..++.+.++.+|..++.++..++..-..  .......++.+..++.+.+..++..|+.++..++..-+..
T Consensus       165 -----l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~  237 (588)
T d1b3ua_         165 -----LRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL--DNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE  237 (588)
T ss_dssp             -----HHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH--HHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH
T ss_pred             -----HHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcH--HHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCHH
Confidence                 367788888889999999999999998743222  1222345677888888889999999999999887532221


Q ss_pred             HHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCH
Q 006494          520 SRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNS  599 (643)
Q Consensus       520 ~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~  599 (643)
                        ......++.+..++.+.+..++..++.+|.+++..-..  .+.....++.+..++.+.++.+|..|+..|..++..-+
T Consensus       238 --~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~  313 (588)
T d1b3ua_         238 --DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLS  313 (588)
T ss_dssp             --HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSC
T ss_pred             --HHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhhh--hhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHh
Confidence              12234688888888888888999999999998764221  12334678999999999999999999999988886432


Q ss_pred             H-HHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 006494          600 Y-FILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHM  636 (643)
Q Consensus       600 ~-~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l  636 (643)
                      . ......-..+++.+...+.+.++.+|..+...+..+
T Consensus       314 ~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~  351 (588)
T d1b3ua_         314 ADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGL  351 (588)
T ss_dssp             TTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGG
T ss_pred             hhhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhh
Confidence            1 111122245788888888888888887776665544

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.32  E-value=1.8e-07  Score=79.50  Aligned_cols=51  Identities=14%  Similarity=0.240  Sum_probs=41.3

Q ss_pred             CCCcccCccCcccccCC------------------eecCCcccccHHhHHHHHhc----CCCCCCCCCcccCC
Q 006494          269 VPHEFLCPVTLEIMTDP------------------VIVATGQTYERESIQRWLNS----NHKTCPKTGQILDH  319 (643)
Q Consensus       269 ~p~~f~Cpi~~~~m~dP------------------v~~~~g~t~~r~~I~~w~~~----~~~~cP~~~~~l~~  319 (643)
                      .+.+..||||++-|.++                  ++++|||.|+..||.+|+..    ++.+||.||..+..
T Consensus        22 ~~~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~   94 (114)
T d1v87a_          22 VAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             SCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred             ccccccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhcc
Confidence            45566899999998764                  35789999999999999984    34579999987753

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.18  E-value=3.2e-05  Score=74.49  Aligned_cols=206  Identities=14%  Similarity=0.029  Sum_probs=135.9

Q ss_pred             hCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchh
Q 006494          402 NGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMV  481 (643)
Q Consensus       402 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i  481 (643)
                      ....+.|+++|+++++.++..|+.+|..+.          ...+++.++.++++.++.+|..|+.+|..+........  
T Consensus        18 ~~~~~~L~~~L~d~~~~vR~~A~~~L~~~~----------~~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~--   85 (276)
T d1oyza_          18 KLNDDELFRLLDDHNSLKRISSARVLQLRG----------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED--   85 (276)
T ss_dssp             TSCHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH--
T ss_pred             cCCHHHHHHHhcCCCHHHHHHHHHHHHhhC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccccc--
Confidence            456778999999999999999999997653          23468999999999999999999999998864332211  


Q ss_pred             hccCChHHHHHH-cccCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhH
Q 006494          482 GNLNGIPPLVNL-LRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGR  560 (643)
Q Consensus       482 ~~~g~i~~Lv~l-L~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~  560 (643)
                         ..++.|... +.+.++.++..|+.+|.+++.......    ...++.+...+.+.+..+...++.++....      
T Consensus        86 ---~~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~----~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~------  152 (276)
T d1oyza_          86 ---NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS----PKIVEQSQITAFDKSTNVRRATAFAISVIN------  152 (276)
T ss_dssp             ---HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH----HHHHHHHHHHTTCSCHHHHHHHHHHHHTC-------
T ss_pred             ---chHHHHHHHHhcCCChhHHHHHHHHHHHHccccchhh----HHHHHHHHHHhcCcchHHHHHHHHHHhhcc------
Confidence               123445544 466789999999999999886443321    235667777777777777777766665432      


Q ss_pred             HHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHH----------------------HHcCcHHHHHHHH
Q 006494          561 NEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAA----------------------LQYGVYEHLVEIT  618 (643)
Q Consensus       561 ~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~----------------------~~~g~i~~L~~ll  618 (643)
                          ....++.+..++...+...+..+..++..+..........+                      ....+++.|+..+
T Consensus       153 ----~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~L~~~l  228 (276)
T d1oyza_         153 ----DKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDEL  228 (276)
T ss_dssp             ------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             ----hHHHHHHHHHhcccccchhhhhHHHHHHhhhccccccchhhhhhhhhhhhhhhhhhccccchhhhhhhHHHHHHHh
Confidence                23445566666665555555555555544443332211110                      1134678888777


Q ss_pred             hhCCHHHHHHHHHHHHHhhh
Q 006494          619 RCGTNRGQRKANSLLQHMSK  638 (643)
Q Consensus       619 ~~g~~~~k~~A~~lL~~l~~  638 (643)
                      .+.  .++..|...|..+..
T Consensus       229 ~d~--~vr~~a~~aL~~ig~  246 (276)
T d1oyza_         229 KKN--TVYDDIIEAAGELGD  246 (276)
T ss_dssp             TSS--SCCHHHHHHHHHHCC
T ss_pred             CCh--HHHHHHHHHHHHcCC
Confidence            653  466777777776654

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=98.14  E-value=8.3e-07  Score=65.84  Aligned_cols=48  Identities=19%  Similarity=0.369  Sum_probs=41.4

Q ss_pred             CcccCccCcccccCCeecCC-----cccccHHhHHHHHh-cCCCCCCCCCcccC
Q 006494          271 HEFLCPVTLEIMTDPVIVAT-----GQTYERESIQRWLN-SNHKTCPKTGQILD  318 (643)
Q Consensus       271 ~~f~Cpi~~~~m~dPv~~~~-----g~t~~r~~I~~w~~-~~~~~cP~~~~~l~  318 (643)
                      +...|+||++-+.+|.+.+|     +|.|++.||++|+. .++.+||.|+.++.
T Consensus         5 d~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeee
Confidence            55779999999999988776     49999999999997 45678999998865

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.05  E-value=9.6e-05  Score=76.32  Aligned_cols=273  Identities=12%  Similarity=0.073  Sum_probs=182.6

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHh-hCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHH-
Q 006494          364 CSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIAN-NGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIA-  441 (643)
Q Consensus       364 ~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~-  441 (643)
                      ..+...+.+++.-....+...+..++..+..+....-. ......+-.+....+.+.+.-++..|..|...+..|..+. 
T Consensus       125 ~~f~~~l~~~d~~~~~~s~~i~~ll~~~~~~~~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~~~~R~~fw~  204 (477)
T d1ho8a_         125 QLFDVSLKGDFQTVLISGFNVVSLLVQNGLHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWL  204 (477)
T ss_dssp             HHHHHCSCSSHHHHHHHHHHHHHHHTSTTTCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHT
T ss_pred             HHHHHhccCchhHHHHHHHHHHHHHHhccccccchHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhcCccHHHHHHH
Confidence            34455566666666666776777776544333322211 1233444445567788899889999998888888888875 


Q ss_pred             -hcCChHHHHHHHcc--C---------------CHHHHHHHHHHHHHccccccccchhhcc--CChHHHHHHcccC-Chh
Q 006494          442 -REGAIPAIIEILQN--G---------------TNEARENSAAALFSLSMLDENRVMVGNL--NGIPPLVNLLRYG-SIR  500 (643)
Q Consensus       442 -~~g~i~~Lv~lL~~--~---------------~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~--g~i~~Lv~lL~s~-~~~  500 (643)
                       +...+++++++|+.  +               ....+.++.-+++-||+..+....+...  +.|+.|+.+++.. ...
T Consensus       205 ~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~~~~i~~l~~i~~~s~KEK  284 (477)
T d1ho8a_         205 HEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEK  284 (477)
T ss_dssp             THHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHH
T ss_pred             cccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence             34567788887753  1               2467889999999999988877777664  4589999999654 678


Q ss_pred             hHHHHHHHHHHhhcCCC--c----hHHHHhcCcHHHHHHHhcc---CChhhHHHHHHHH-------HHHhCChh------
Q 006494          501 GKKDAATALFNLSINQS--N----KSRAIKAGIIPSLLKLLED---KALGMVDEALSIL-------QLLASHPE------  558 (643)
Q Consensus       501 ~k~~A~~aL~nLs~~~e--n----~~~iv~~G~v~~Lv~lL~~---~~~~~~~~Al~iL-------~nLa~~~~------  558 (643)
                      +.+-++.+|.||+....  +    ...|+..++++. ++.|..   .++++.+..-.+-       ..+++.++      
T Consensus       285 vvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~-l~~L~~r~~~Dedl~edl~~L~~~L~~~~k~lTsfd~Y~~Ev~  363 (477)
T d1ho8a_         285 VSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPT-VQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELD  363 (477)
T ss_dssp             HHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHH-HHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHH-HHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHh
Confidence            88999999999987543  2    334555666655 455544   4555544432221       22222222      


Q ss_pred             ---------hH-HHHH--------hc--CcHHHHHHHHhc----------CChHHHHHHHHHHHHhccCCHHHHHHHHHc
Q 006494          559 ---------GR-NEIG--------RL--SFIETLVEIIKN----------GTPKNKECATSVLLELGLNNSYFILAALQY  608 (643)
Q Consensus       559 ---------~~-~~i~--------~~--g~i~~Lv~lL~~----------~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~  608 (643)
                               .+ +.+.        +.  ..+..|+++|.+          .++.+-.-|+.=+..+|++-|..+..+.+.
T Consensus       364 Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~l  443 (477)
T d1ho8a_         364 SKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKT  443 (477)
T ss_dssp             HTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHH
T ss_pred             cCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHHHHc
Confidence                     11 1121        12  357889999963          133444556666888999888877778888


Q ss_pred             CcHHHHHHHHhhCCHHHHHHHHHHHHHhh
Q 006494          609 GVYEHLVEITRCGTNRGQRKANSLLQHMS  637 (643)
Q Consensus       609 g~i~~L~~ll~~g~~~~k~~A~~lL~~l~  637 (643)
                      |+-..+++++.+.++.+|..|...++-+-
T Consensus       444 g~K~~vM~Lm~h~d~~Vr~eAL~avQklm  472 (477)
T d1ho8a_         444 GGKADIMELLNHSDSRVKYEALKATQAII  472 (477)
T ss_dssp             SHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999887654

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=1.6e-06  Score=69.64  Aligned_cols=43  Identities=19%  Similarity=0.505  Sum_probs=35.4

Q ss_pred             CccCcccccC------------------CeecCCcccccHHhHHHHHhcCCCCCCCCCcccC
Q 006494          275 CPVTLEIMTD------------------PVIVATGQTYERESIQRWLNSNHKTCPKTGQILD  318 (643)
Q Consensus       275 Cpi~~~~m~d------------------Pv~~~~g~t~~r~~I~~w~~~~~~~cP~~~~~l~  318 (643)
                      |+||++-|.+                  +++++|||.|+..||.+|+.. +.+||+||++..
T Consensus        24 C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~   84 (88)
T d3dplr1          24 CAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE   84 (88)
T ss_dssp             CSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred             CEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHHH-CCcCCCCCCccc
Confidence            7777776665                  234689999999999999997 578999998865

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=1.1e-05  Score=94.96  Aligned_cols=271  Identities=11%  Similarity=0.086  Sum_probs=172.4

Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHH
Q 006494          361 EEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHI  440 (643)
Q Consensus       361 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i  440 (643)
                      ..+..|++++.+.|++.|+.|+..|......+......-.....++.|+++|.+.++++|..|+.+|..+...-...  .
T Consensus         3 ~~~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~--~   80 (1207)
T d1u6gc_           3 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY--Q   80 (1207)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH--H
T ss_pred             hhHHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHh--h
Confidence            46788999999999999999998887654322111000011225678999999999999999999998886432211  1


Q ss_pred             HhcCChHHHHHHHccCCHHHHHHHHHHHHHccc----cccccchhh--ccCChHHHHHHccc-CChhhHHHHHHHHHHhh
Q 006494          441 AREGAIPAIIEILQNGTNEARENSAAALFSLSM----LDENRVMVG--NLNGIPPLVNLLRY-GSIRGKKDAATALFNLS  513 (643)
Q Consensus       441 ~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~----~~~~k~~i~--~~g~i~~Lv~lL~s-~~~~~k~~A~~aL~nLs  513 (643)
                      + ...++.|+..+.+++...+..++.+|..+..    .........  ....++.|...+.. .+..++..|+.+|..+.
T Consensus        81 ~-~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~  159 (1207)
T d1u6gc_          81 V-ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADML  159 (1207)
T ss_dssp             H-HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHH
Confidence            1 1246667777777777777777776665531    111111111  01233444444433 36678889999998887


Q ss_pred             cCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHHHhcCcHHHHHHHHhc-CChHHHHHHHHHHH
Q 006494          514 INQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEGRNEIGRLSFIETLVEIIKN-GTPKNKECATSVLL  592 (643)
Q Consensus       514 ~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~-~s~~~ke~A~~~L~  592 (643)
                      ..-+.--.-....+++.|+..+.+....++..|+.+|..|+..-..  ... ...++.++..+.. .+...+..++.++.
T Consensus       160 ~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~--~~~-~~~~~~ll~~l~~~~~~~~~~~~~~~l~  236 (1207)
T d1u6gc_         160 SRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN--IVF-VDLIEHLLSELSKNDSMSTTRTYIQCIA  236 (1207)
T ss_dssp             HHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC------C-TTHHHHHHHHHHHTCSSCSCTTHHHHHH
T ss_pred             HHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCH--HHH-HHHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence            5332211001123567778888888888999999999999876321  111 2457777766643 44555666778888


Q ss_pred             HhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494          593 ELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK  638 (643)
Q Consensus       593 ~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~  638 (643)
                      .++...+...... -..+++.+...+...++..++.|...+..+..
T Consensus       237 ~l~~~~~~~~~~~-l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~  281 (1207)
T d1u6gc_         237 AISRQAGHRIGEY-LEKIIPLVVKFCNVDDDELREYCIQAFESFVR  281 (1207)
T ss_dssp             HHHHHSSGGGTTS-CTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHH
T ss_pred             HHHHHcchhhHHH-HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence            8876544321110 14679999999999999999999998888764

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=0.00035  Score=71.42  Aligned_cols=274  Identities=14%  Similarity=0.077  Sum_probs=165.0

Q ss_pred             HHHHHHHHhhcC--CCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCC--CHHHHHHHHHHHHhcccChhh
Q 006494          361 EEICSLIQNLSS--SQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYP--DSKIQEHTVTALLNLSLDETN  436 (643)
Q Consensus       361 ~~i~~Lv~~L~s--~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~nLs~~~~~  436 (643)
                      +.++.+++.+.+  .++..+..++..+..+..........-.-...++.++..+.+.  +.+++..++.++.++......
T Consensus       127 ~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~  206 (458)
T d1ibrb_         127 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA  206 (458)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH
T ss_pred             chhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhh
Confidence            357777777764  3455666667777665533222111111122456777777654  567888999999887643221


Q ss_pred             HH--HHHhcCChHHHHHHHccCCHHHHHHHHHHHHHcccccc--ccchhhccCChHHHHHHcccCChhhHHHHHHHHHHh
Q 006494          437 KR--HIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDE--NRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNL  512 (643)
Q Consensus       437 k~--~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~--~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nL  512 (643)
                      ..  ........+.+...+.+++++.+..+..++..+.....  ....+ .....+.+...+.+.+..++..|+..+..+
T Consensus       207 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i  285 (458)
T d1ibrb_         207 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM-GPALFAITIEAMKSDIDEVALQGIEFWSNV  285 (458)
T ss_dssp             HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTT-TTTHHHHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            11  11222345667777788899999999999988863221  11111 112234445556777888888888888877


Q ss_pred             hcCCC---------------------chHHHHhcCcHHHHHHHhcc-------CChhhHHHHHHHHHHHhCChhhHHHHH
Q 006494          513 SINQS---------------------NKSRAIKAGIIPSLLKLLED-------KALGMVDEALSILQLLASHPEGRNEIG  564 (643)
Q Consensus       513 s~~~e---------------------n~~~iv~~G~v~~Lv~lL~~-------~~~~~~~~Al~iL~nLa~~~~~~~~i~  564 (643)
                      +....                     .-....-...++.+.+.+.+       ....+...|..++..++.....  .+.
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~--~~~  363 (458)
T d1ibrb_         286 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV  363 (458)
T ss_dssp             HHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--THH
T ss_pred             HHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccH--hhh
Confidence            53110                     01111112344555555532       1223566677777777653211  111


Q ss_pred             hcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCH-HHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhhc
Q 006494          565 RLSFIETLVEIIKNGTPKNKECATSVLLELGLNNS-YFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSKR  639 (643)
Q Consensus       565 ~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~-~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~~  639 (643)
                       ...++.+...+.+.+...|+.|+.+|..++.+.. ..... .-..+++.|+..+.+.++++|..|..+|..+.++
T Consensus       364 -~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~-~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~  437 (458)
T d1ibrb_         364 -PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL  437 (458)
T ss_dssp             -HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCT-TTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             -hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence             1345666677778888999999999999986532 21111 1146889999999999999999999999887653

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=0.00039  Score=78.83  Aligned_cols=271  Identities=13%  Similarity=0.068  Sum_probs=158.4

Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccC--hhhHH
Q 006494          361 EEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLD--ETNKR  438 (643)
Q Consensus       361 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~--~~~k~  438 (643)
                      ..++.+.+.+.+.++..|..|+..+..++....+.-.... ...++.|+..++++++.++..++.+|..++..  +....
T Consensus       395 ~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l-~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~  473 (888)
T d1qbkb_         395 HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPD  473 (888)
T ss_dssp             HHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTH-HHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHH
T ss_pred             HHHHHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccc-hhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            4556666778889999999999999988754332211111 23578899999999999999999999887632  11222


Q ss_pred             HHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhc--cCChHHHHHHcccCChhhHHHHHHHHHHhhc--
Q 006494          439 HIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGN--LNGIPPLVNLLRYGSIRGKKDAATALFNLSI--  514 (643)
Q Consensus       439 ~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~--~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~--  514 (643)
                      .. -...++.++..+.+.++.++..|+.+|.++.....  ..+..  ...++.|+..+.......+..+..++..++.  
T Consensus       474 ~~-~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~--~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~  550 (888)
T d1qbkb_         474 TY-LKPLMTELLKRILDSNKRVQEAACSAFATLEEEAC--TELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSV  550 (888)
T ss_dssp             HH-TTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHT--TSSGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             hh-hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh--hhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhh
Confidence            22 23578888888889999999999999998863211  11111  2345566666665555555444444444432  


Q ss_pred             -CCCchHHHHhcCcHHHHHHHhc------------------------c--------------------------------
Q 006494          515 -NQSNKSRAIKAGIIPSLLKLLE------------------------D--------------------------------  537 (643)
Q Consensus       515 -~~en~~~iv~~G~v~~Lv~lL~------------------------~--------------------------------  537 (643)
                       ..-++..+++ ..++.+++...                        .                                
T Consensus       551 ~~~~~~~~~~~-~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  629 (888)
T d1qbkb_         551 GHHLNKPEYIQ-MLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPD  629 (888)
T ss_dssp             GGGGCSHHHHH-HHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             hccccchHHHH-HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence             1101111110 01111111110                        0                                


Q ss_pred             ----CChhhHHHHHHHHHHHhCC--hhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcH
Q 006494          538 ----KALGMVDEALSILQLLASH--PEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVY  611 (643)
Q Consensus       538 ----~~~~~~~~Al~iL~nLa~~--~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i  611 (643)
                          ........++.++..+...  ......+.....++.+...+.+.++.+++.|..++..++...+......++ ..+
T Consensus       630 ~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~-~~~  708 (888)
T d1qbkb_         630 QYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIA-DFM  708 (888)
T ss_dssp             TSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHH
T ss_pred             cccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHH-HHH
Confidence                1122333344444444332  112222223345677777888888999999999998888765443322222 256


Q ss_pred             HHHHHHHhhCCHHHHHHHHHHHHHhh
Q 006494          612 EHLVEITRCGTNRGQRKANSLLQHMS  637 (643)
Q Consensus       612 ~~L~~ll~~g~~~~k~~A~~lL~~l~  637 (643)
                      +.|..-+.+....++..|.+.+-.+.
T Consensus       709 ~~l~~~L~~~~~~v~~~a~~~ig~ia  734 (888)
T d1qbkb_         709 PILGTNLNPEFISVCNNATWAIGEIS  734 (888)
T ss_dssp             HHHHHTCCGGGHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCcCCHHHHHHHHHHHHHHH
Confidence            66666666677788888887776554

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.66  E-value=0.00091  Score=74.10  Aligned_cols=267  Identities=12%  Similarity=0.069  Sum_probs=163.2

Q ss_pred             HHHHHH-HhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCC--CHHHHHHHHHHHHhcccChhh--
Q 006494          362 EICSLI-QNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYP--DSKIQEHTVTALLNLSLDETN--  436 (643)
Q Consensus       362 ~i~~Lv-~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~nLs~~~~~--  436 (643)
                      .+..++ ..+.++|+++|..|-..|..+...++        .+.+..|...+.+.  +..++..|+-.|.|.......  
T Consensus         5 ~~~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~--------~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~   76 (861)
T d2bpta1           5 EFAQLLENSILSPDQNIRLTSETQLKKLSNDNF--------LQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVK   76 (861)
T ss_dssp             HHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCH--------HHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCc--------hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchh
Confidence            344444 44678899999999999988775432        13456677777654  567778888888886432110  


Q ss_pred             HH----HH---H----hcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCC-hhhHHH
Q 006494          437 KR----HI---A----REGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGS-IRGKKD  504 (643)
Q Consensus       437 k~----~i---~----~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~-~~~k~~  504 (643)
                      ..    ..   .    ....-..++..|.+.+..+|..++.++..++..+-...  .....++.|+..+.+.+ ...+..
T Consensus        77 ~~~~~~~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~--~wpeli~~L~~~~~s~~~~~~~~~  154 (861)
T d2bpta1          77 TQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHG--AWPELMKIMVDNTGAEQPENVKRA  154 (861)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGT--CCHHHHHHHHHHTSTTSCHHHHHH
T ss_pred             hhhHHhhhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcC--chHHHHHHHHHHhcCCCcHHHHHH
Confidence            00    00   0    01123456677778888999999988888864321110  11346778888887664 456777


Q ss_pred             HHHHHHHhhcCCCchHHHHhc---CcHHHHHHHhcc--CChhhHHHHHHHHHHHhCChhhHH--HHHhcCcHHHHHHHHh
Q 006494          505 AATALFNLSINQSNKSRAIKA---GIIPSLLKLLED--KALGMVDEALSILQLLASHPEGRN--EIGRLSFIETLVEIIK  577 (643)
Q Consensus       505 A~~aL~nLs~~~en~~~iv~~---G~v~~Lv~lL~~--~~~~~~~~Al~iL~nLa~~~~~~~--~i~~~g~i~~Lv~lL~  577 (643)
                      |+.+|..++..-+....-.-.   ..+..++..+.+  .+..+...|+.++.++...-....  .......++.+...+.
T Consensus       155 al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  234 (861)
T d2bpta1         155 SLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQ  234 (861)
T ss_dssp             HHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhc
Confidence            888998887543322111111   233334444433  456788889999998877522111  1111235677778888


Q ss_pred             cCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494          578 NGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK  638 (643)
Q Consensus       578 ~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~  638 (643)
                      +.++..+..|..+|..++...++........-+...+.....+.++..+..|..++..+.+
T Consensus       235 ~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~  295 (861)
T d2bpta1         235 AEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICE  295 (861)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence            8899999999999999887544332222222222233344456678888888888876654

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=0.00035  Score=79.28  Aligned_cols=274  Identities=14%  Similarity=0.061  Sum_probs=153.4

Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHH
Q 006494          360 IEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRH  439 (643)
Q Consensus       360 ~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~  439 (643)
                      ...++.++..+++.++.+|..|++.|..++.........-.-...++.++..+.+.++.+++.|+.+|.++......  .
T Consensus       435 ~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~--~  512 (888)
T d1qbkb_         435 PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACT--E  512 (888)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTT--S
T ss_pred             hhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh--h
Confidence            45778899999999999999999999888743211111111235678888888888999999999999988632110  0


Q ss_pred             HH--hcCChHHHHHHHccCCHHHHHHHHHHHHHcccc---c-----------------------cccch--hh-------
Q 006494          440 IA--REGAIPAIIEILQNGTNEARENSAAALFSLSML---D-----------------------ENRVM--VG-------  482 (643)
Q Consensus       440 i~--~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~---~-----------------------~~k~~--i~-------  482 (643)
                      +.  -...++.++..+.......+..+..++..++..   .                       +.+..  +.       
T Consensus       513 l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~  592 (888)
T d1qbkb_         513 LVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVA  592 (888)
T ss_dssp             SGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence            10  011234444444444433333333333222100   0                       00000  00       


Q ss_pred             c---cCC-------hHHHHHHcc-----------------cCChhhHHHHHHHHHHhhc-CCCchHHHH-hcCcHHHHHH
Q 006494          483 N---LNG-------IPPLVNLLR-----------------YGSIRGKKDAATALFNLSI-NQSNKSRAI-KAGIIPSLLK  533 (643)
Q Consensus       483 ~---~g~-------i~~Lv~lL~-----------------s~~~~~k~~A~~aL~nLs~-~~en~~~iv-~~G~v~~Lv~  533 (643)
                      .   .+.       ++.+++++.                 ..+......++.++..+.. ..+.-..++ ....++.+..
T Consensus       593 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~  672 (888)
T d1qbkb_         593 TALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQ  672 (888)
T ss_dssp             HHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHH
T ss_pred             HHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHH
Confidence            0   000       011111110                 0112233334444444442 122222233 3456777788


Q ss_pred             HhccCChhhHHHHHHHHHHHhCC-hhh-HHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcH
Q 006494          534 LLEDKALGMVDEALSILQLLASH-PEG-RNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVY  611 (643)
Q Consensus       534 lL~~~~~~~~~~Al~iL~nLa~~-~~~-~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i  611 (643)
                      .+.+.++.+.+.|..++..|+.. ... ...+  ...++.+..-|.+....++.+|++++..++...++...-.+ ..++
T Consensus       673 ~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l--~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~py~-~~il  749 (888)
T d1qbkb_         673 CMQDKMPEVRQSSFALLGDLTKACFQHVKPCI--ADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYI-PMVL  749 (888)
T ss_dssp             HHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGH--HHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGGGGGGS-HHHH
T ss_pred             HhCCCChHHHHHHHHHHHHHHHhhhHHHHHHH--HHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHhhhhH-HHHH
Confidence            88888888999999999888764 211 1111  13456666666666778899999999888875443211111 2578


Q ss_pred             HHHHHHHhhC--CHHHHHHHHHHHHHhhh
Q 006494          612 EHLVEITRCG--TNRGQRKANSLLQHMSK  638 (643)
Q Consensus       612 ~~L~~ll~~g--~~~~k~~A~~lL~~l~~  638 (643)
                      +.|+.++.+.  ...+++++..+|-.|..
T Consensus       750 ~~L~~il~~~~~~~~v~~n~~~~lgrl~~  778 (888)
T d1qbkb_         750 HQLVEIINRPNTPKTLLENTAITIGRLGY  778 (888)
T ss_dssp             HHHHHHHTCTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCccHHHHHHHHHHHHHHHH
Confidence            8888888765  34578888888876653

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.49  E-value=1.4e-05  Score=66.71  Aligned_cols=108  Identities=20%  Similarity=0.199  Sum_probs=84.2

Q ss_pred             cCCCHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHH
Q 006494          413 SYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVN  492 (643)
Q Consensus       413 ~~~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~  492 (643)
                      +++++.++..|+.+|..+.           ...++.|+..|.++++.+|..|+.+|.++.          ..++++.|+.
T Consensus         2 ~D~~~~VR~~A~~aL~~~~-----------~~~~~~L~~~l~d~~~~vR~~a~~~L~~~~----------~~~~~~~L~~   60 (111)
T d1te4a_           2 ADENKWVRRDVSTALSRMG-----------DEAFEPLLESLSNEDWRIRGAAAWIIGNFQ----------DERAVEPLIK   60 (111)
T ss_dssp             CSSCCCSSSSCCSSTTSCS-----------STTHHHHHHGGGCSCHHHHHHHHHHHGGGC----------SHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHhC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhcc----------hhhhHHHHHh
Confidence            4455556666666655432           246889999999999999999999987653          3457899999


Q ss_pred             HcccCChhhHHHHHHHHHHhhcCCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHH
Q 006494          493 LLRYGSIRGKKDAATALFNLSINQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQ  551 (643)
Q Consensus       493 lL~s~~~~~k~~A~~aL~nLs~~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~  551 (643)
                      +|.+.++.++..|+.+|..+.          ..++++.|..++.++++.++..|+.+|.
T Consensus        61 ~l~d~~~~VR~~a~~aL~~i~----------~~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          61 LLEDDSGFVRSGAARSLEQIG----------GERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHCCTHHHHHHHHHHHHHC----------SHHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             hhccchhHHHHHHHHHHHHhC----------ccchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            999999999999999998763          2356888999998888899988887763

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=0.0012  Score=76.91  Aligned_cols=231  Identities=10%  Similarity=0.073  Sum_probs=148.1

Q ss_pred             hHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHHHhccc----Ch
Q 006494          359 LIEEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTALLNLSL----DE  434 (643)
Q Consensus       359 ~~~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~----~~  434 (643)
                      ....++.+++.|...++++|..|++.|..+...-++...    ...++.|+..+.+++...+..+..+|..+..    ..
T Consensus        43 ~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~~----~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~  118 (1207)
T d1u6gc_          43 ERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQV----ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPAS  118 (1207)
T ss_dssp             HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHH----HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC---
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhhH----HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhccccc
Confidence            456889999999999999999999999998865443321    1246778888877777777777777665421    11


Q ss_pred             hhH--HHHHhcCChHHHHHHHcc-CCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHH
Q 006494          435 TNK--RHIAREGAIPAIIEILQN-GTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFN  511 (643)
Q Consensus       435 ~~k--~~i~~~g~i~~Lv~lL~~-~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~n  511 (643)
                      .+.  ....-...++.+...+.+ .+..++..+..+|..+......--.-.....++.|+..+.+....+++.|+.+|..
T Consensus       119 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~  198 (1207)
T d1u6gc_         119 SGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGH  198 (1207)
T ss_dssp             --CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            110  011111234444444444 46778888888888775322211000112356777788888889999999999999


Q ss_pred             hhcCCCchHHHHhcCcHHHHHHHhcc-CChhhHHHHHHHHHHHhCChhhHHHHHh--cCcHHHHHHHHhcCChHHHHHHH
Q 006494          512 LSINQSNKSRAIKAGIIPSLLKLLED-KALGMVDEALSILQLLASHPEGRNEIGR--LSFIETLVEIIKNGTPKNKECAT  588 (643)
Q Consensus       512 Ls~~~en~~~iv~~G~v~~Lv~lL~~-~~~~~~~~Al~iL~nLa~~~~~~~~i~~--~g~i~~Lv~lL~~~s~~~ke~A~  588 (643)
                      |+.+-...   .-...++.+++.+.. .+......++.++..++.....+  +..  ..+++.+...+...++..++.|+
T Consensus       199 l~~~~~~~---~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~--~~~~l~~i~~~l~~~l~~~~~~~r~~al  273 (1207)
T d1u6gc_         199 LVMSCGNI---VFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHR--IGEYLEKIIPLVVKFCNVDDDELREYCI  273 (1207)
T ss_dssp             HTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGG--GTTSCTTHHHHHHHHHSSCCTTTHHHHH
T ss_pred             HHHHCCHH---HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchh--hHHHHHHHHHHHHHHhcCccHHHHHHHH
Confidence            98643221   112456777776654 34445556677777776542111  222  36788999999988899999999


Q ss_pred             HHHHHhccCC
Q 006494          589 SVLLELGLNN  598 (643)
Q Consensus       589 ~~L~~L~~~~  598 (643)
                      .++..++...
T Consensus       274 ~~l~~l~~~~  283 (1207)
T d1u6gc_         274 QAFESFVRRC  283 (1207)
T ss_dssp             HHHHHHHHCT
T ss_pred             HHHHHHHHhC
Confidence            8888877543

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.23  E-value=0.00024  Score=58.77  Aligned_cols=88  Identities=23%  Similarity=0.272  Sum_probs=74.4

Q ss_pred             CChHHHHHHhcCCCHHHHHHHHHHHHhcccChhhHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhh
Q 006494          403 GGIRPLVQLLSYPDSKIQEHTVTALLNLSLDETNKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVG  482 (643)
Q Consensus       403 g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~  482 (643)
                      .+++.|+..|.++++.++..|+.+|.++.          ..++++.|+.+|++.++.+|..|+.+|..+          +
T Consensus        22 ~~~~~L~~~l~d~~~~vR~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~VR~~a~~aL~~i----------~   81 (111)
T d1te4a_          22 EAFEPLLESLSNEDWRIRGAAAWIIGNFQ----------DERAVEPLIKLLEDDSGFVRSGAARSLEQI----------G   81 (111)
T ss_dssp             TTHHHHHHGGGCSCHHHHHHHHHHHGGGC----------SHHHHHHHHHHHHHCCTHHHHHHHHHHHHH----------C
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhcc----------hhhhHHHHHhhhccchhHHHHHHHHHHHHh----------C
Confidence            36788999999999999999999997753          223678999999999999999999999865          3


Q ss_pred             ccCChHHHHHHcccCChhhHHHHHHHHH
Q 006494          483 NLNGIPPLVNLLRYGSIRGKKDAATALF  510 (643)
Q Consensus       483 ~~g~i~~Lv~lL~s~~~~~k~~A~~aL~  510 (643)
                      ..++++.|..++++.++.++..|+.+|.
T Consensus        82 ~~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          82 GERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             SHHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             ccchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            4567899999999999999999988763

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=0.0017  Score=66.05  Aligned_cols=264  Identities=10%  Similarity=0.055  Sum_probs=159.4

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCC--CHHHHHHHHHHHHhccc-C-hhhHHH
Q 006494          364 CSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYP--DSKIQEHTVTALLNLSL-D-ETNKRH  439 (643)
Q Consensus       364 ~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~nLs~-~-~~~k~~  439 (643)
                      -.+++.+-++|.+++..|-..|..+.+.++.        +.+..|...+.+.  +..++..|+..|.|... . +..+..
T Consensus         3 ~~il~~~~s~d~~~r~~A~~~L~~~~~~~~~--------~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~   74 (458)
T d1ibrb_           3 ITILEKTVSPDRLELEAAQKFLERAAVENLP--------TFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQ   74 (458)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHH
T ss_pred             HHHHHHHhCcCHHHHHHHHHHHHHHHhcCch--------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhhH
Confidence            3456666788999999999999888754321        2345567767544  45677777777776532 2 111111


Q ss_pred             HH----------hcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccC--ChhhHHHHHH
Q 006494          440 IA----------REGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYG--SIRGKKDAAT  507 (643)
Q Consensus       440 i~----------~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~--~~~~k~~A~~  507 (643)
                      ..          .......++..+.+.+.. +..++.++..++..+...  -...+.++.++..+.++  +...+..++.
T Consensus        75 ~~~~~~~l~~~~~~~i~~~ll~~~~~~~~~-~~~~~~~~~~i~~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~l~  151 (458)
T d1ibrb_          75 YQQRWLAIDANARREVKNYVLQTLGTETYR-PSSASQCVAGIACAEIPV--NQWPELIPQLVANVTNPNSTEHMKESTLE  151 (458)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHHHTTCCCSS-SCSHHHHHHHHHHHHGGG--TCCTTHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred             HhhhhccCCHHHHHHHHHHHHhccCCCcHH-HHHHHHHHHHHHHHhCCc--ccCcchhHHHHHHHHhhcchHHHHHHHHH
Confidence            11          112233455555544322 233444444443221111  11246788899888764  4566777888


Q ss_pred             HHHHhhcC-CCchHHHHhcCcHHHHHHHhcc--CChhhHHHHHHHHHHHhCChhhHH--HHHhcCcHHHHHHHHhcCChH
Q 006494          508 ALFNLSIN-QSNKSRAIKAGIIPSLLKLLED--KALGMVDEALSILQLLASHPEGRN--EIGRLSFIETLVEIIKNGTPK  582 (643)
Q Consensus       508 aL~nLs~~-~en~~~iv~~G~v~~Lv~lL~~--~~~~~~~~Al~iL~nLa~~~~~~~--~i~~~g~i~~Lv~lL~~~s~~  582 (643)
                      ++..++.. .+....-.-...++.++..+.+  .+..+...|+.++.++........  ........+.+..++.+.+++
T Consensus       152 ~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  231 (458)
T d1ibrb_         152 AIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTR  231 (458)
T ss_dssp             HHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHH
T ss_pred             HHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHH
Confidence            88877652 2222222223456778888865  355788899999999887632211  111223456677777888899


Q ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494          583 NKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK  638 (643)
Q Consensus       583 ~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~  638 (643)
                      .+..++.+|..++...+......+.....+.+.....+.++..+..|...+..+.+
T Consensus       232 ~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~  287 (458)
T d1ibrb_         232 VRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCD  287 (458)
T ss_dssp             HHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence            99999999999987655433222233345555666777888889999888887754

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.99  E-value=0.0045  Score=63.54  Aligned_cols=223  Identities=13%  Similarity=0.132  Sum_probs=149.8

Q ss_pred             cCCCHHHHHHHHHHHHHhhhhChhhHHHHHh--hCChHHHHHHhcC-----------------CCHHHHHHHHHHHHhcc
Q 006494          371 SSSQLNIKRDSVMKIRMLSKENPDNRILIAN--NGGIRPLVQLLSY-----------------PDSKIQEHTVTALLNLS  431 (643)
Q Consensus       371 ~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~--~g~i~~Lv~lL~~-----------------~~~~~~~~a~~~L~nLs  431 (643)
                      ++++.+.+.-++..+..+. ..+..|..+..  ...++.|+..|..                 .+..++.+++-+++-|+
T Consensus       175 ~~~~~~~~~i~v~~lq~ll-r~~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLS  253 (477)
T d1ho8a_         175 NIEQMDTCYVCIRLLQELA-VIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLT  253 (477)
T ss_dssp             CTTCHHHHHHHHHHHHHHH-TSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHT
T ss_pred             cccccchHHHHHHHHHHHh-cCccHHHHHHHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHH
Confidence            4667777777888888887 46778887743  3456666666643                 13467899999999999


Q ss_pred             cChhhHHHHHhc--CChHHHHHHHccC-CHHHHHHHHHHHHHcccccc--cc----chhhccCChHHHHHHcccC---Ch
Q 006494          432 LDETNKRHIARE--GAIPAIIEILQNG-TNEARENSAAALFSLSMLDE--NR----VMVGNLNGIPPLVNLLRYG---SI  499 (643)
Q Consensus       432 ~~~~~k~~i~~~--g~i~~Lv~lL~~~-~~~~~~~Aa~~L~~Ls~~~~--~k----~~i~~~g~i~~Lv~lL~s~---~~  499 (643)
                      .+++....+...  +.++.++++++.. -..+...+.+++.|+.....  +.    ..+...+++ +++..|..+   ++
T Consensus       254 F~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l-~~l~~L~~r~~~De  332 (477)
T d1ho8a_         254 FNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNAL-PTVQSLSERKYSDE  332 (477)
T ss_dssp             TSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHH-HHHHHHHSSCCSSH
T ss_pred             cCHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchh-HHHHHHhcCCCCCH
Confidence            999888888765  4588999999754 46677778899999975422  21    223333444 445555443   33


Q ss_pred             hhHHHHHHHHH-----------------------HhhcCCCch-HHHHh----------cCcHHHHHHHhcc--------
Q 006494          500 RGKKDAATALF-----------------------NLSINQSNK-SRAIK----------AGIIPSLLKLLED--------  537 (643)
Q Consensus       500 ~~k~~A~~aL~-----------------------nLs~~~en~-~~iv~----------~G~v~~Lv~lL~~--------  537 (643)
                      +...+ +..|.                       +|..+|.++ ..+..          -.++..|+++|.+        
T Consensus       333 dl~ed-l~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~  411 (477)
T d1ho8a_         333 ELRQD-ISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVN  411 (477)
T ss_dssp             HHHHH-HHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHH-HHHHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccc
Confidence            33321 11111                       122233333 23332          2368889999962        


Q ss_pred             --CChhhHHHHHHHHHHHhCC-hhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhcc
Q 006494          538 --KALGMVDEALSILQLLASH-PEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGL  596 (643)
Q Consensus       538 --~~~~~~~~Al~iL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~  596 (643)
                        .++.+..-|+.=++.++.+ |.||..+-+.|+=..+++++.+.++++|.+|+.++-.+-.
T Consensus       412 ~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~  473 (477)
T d1ho8a_         412 AKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG  473 (477)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred             cCCCcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence              2344556677778888886 8999988888998899999999999999999998876643

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.91  E-value=0.0079  Score=66.50  Aligned_cols=263  Identities=10%  Similarity=0.054  Sum_probs=163.2

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCC--CHHHHHHHHHHHHhccc-Ch-hhHHH
Q 006494          364 CSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYP--DSKIQEHTVTALLNLSL-DE-TNKRH  439 (643)
Q Consensus       364 ~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~nLs~-~~-~~k~~  439 (643)
                      -.+++..-++|.+++..|-..|..+.+.++        .|.+..|...+.+.  +..++..|+-.|.|... .. ..+..
T Consensus         4 ~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~--------~~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~~~~~~~~   75 (876)
T d1qgra_           4 ITILEKTVSPDRLELEAAQKFLERAAVENL--------PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQ   75 (876)
T ss_dssp             HHHHHGGGCSCHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHH
T ss_pred             HHHHHHHhCcCHHHHHHHHHHHHHHHhcCh--------hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccchhhh
Confidence            345555567899999999988888775432        23456677777554  46788888888887532 11 11110


Q ss_pred             H-----H-----hcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccC--ChhhHHHHHH
Q 006494          440 I-----A-----REGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYG--SIRGKKDAAT  507 (643)
Q Consensus       440 i-----~-----~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~--~~~~k~~A~~  507 (643)
                      .     .     ....-..++..|.+.+. .+..++.++..++..+-...  ...+.++.|+..+.+.  +...+..++.
T Consensus        76 ~~~~~~~i~~~~k~~ik~~ll~~l~~~~~-~~~~~a~~i~~i~~~~~p~~--~Wpeli~~L~~~l~~~~~~~~~~~~~l~  152 (876)
T d1qgra_          76 YQQRWLAIDANARREVKNYVLHTLGTETY-RPSSASQCVAGIACAEIPVN--QWPELIPQLVANVTNPNSTEHMKESTLE  152 (876)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHHHTTTCCS-SSCHHHHHHHHHHHHHGGGT--CCTTHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred             hhcccccCCHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHCCcc--ccHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence            0     0     11223456667766543 34456677777654321100  1357889999988665  3567778889


Q ss_pred             HHHHhhcCCCchHHHH--hcCcHHHHHHHhcc--CChhhHHHHHHHHHHHhCChhhHH--HHHhcCcHHHHHHHHhcCCh
Q 006494          508 ALFNLSINQSNKSRAI--KAGIIPSLLKLLED--KALGMVDEALSILQLLASHPEGRN--EIGRLSFIETLVEIIKNGTP  581 (643)
Q Consensus       508 aL~nLs~~~en~~~iv--~~G~v~~Lv~lL~~--~~~~~~~~Al~iL~nLa~~~~~~~--~i~~~g~i~~Lv~lL~~~s~  581 (643)
                      +|..++..-.. ..+.  -...++.++..+.+  .+..+...|+.++.+.........  .....-.++.+...+.+.++
T Consensus       153 ~l~~i~~~~~~-~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~  231 (876)
T d1qgra_         153 AIGYICQDIDP-EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDT  231 (876)
T ss_dssp             HHHHHHHHSCH-HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSH
T ss_pred             HHHHHHHHCCH-HHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCH
Confidence            99888752211 1111  13467778888765  345678888888887765422111  01111245566677777888


Q ss_pred             HHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494          582 KNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSK  638 (643)
Q Consensus       582 ~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~  638 (643)
                      ..+..|+.+|..++...++.........+.+.+.....+..+..+..|...+..+++
T Consensus       232 ~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~  288 (876)
T d1qgra_         232 RVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCD  288 (876)
T ss_dssp             HHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence            999999999999988766555444445566667777778888888888877776654

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.84  E-value=0.00029  Score=56.65  Aligned_cols=43  Identities=12%  Similarity=0.236  Sum_probs=33.0

Q ss_pred             ccCccCcccccC---CeecCCcccccHHhHHHHHh----cCC---CCCCCCCc
Q 006494          273 FLCPVTLEIMTD---PVIVATGQTYERESIQRWLN----SNH---KTCPKTGQ  315 (643)
Q Consensus       273 f~Cpi~~~~m~d---Pv~~~~g~t~~r~~I~~w~~----~~~---~~cP~~~~  315 (643)
                      -.||||.+-+..   |++.+|||.||+.||..|+.    .+.   .+||.++-
T Consensus         6 ~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C   58 (94)
T d1wima_           6 SGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAAC   58 (94)
T ss_dssp             CCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTC
T ss_pred             CcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCCC
Confidence            469999998753   55668999999999999996    232   25998653

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.69  E-value=0.038  Score=60.74  Aligned_cols=274  Identities=14%  Similarity=0.064  Sum_probs=159.8

Q ss_pred             HHHHHHHHhhcCC--CHHHHHHHHHHHHHhhhhChhhHHHHHh--hCChHHHHHHhcCC--CHHHHHHHHHHHHhcccCh
Q 006494          361 EEICSLIQNLSSS--QLNIKRDSVMKIRMLSKENPDNRILIAN--NGGIRPLVQLLSYP--DSKIQEHTVTALLNLSLDE  434 (643)
Q Consensus       361 ~~i~~Lv~~L~s~--~~~~~~~Al~~L~~La~~~~~~r~~i~~--~g~i~~Lv~lL~~~--~~~~~~~a~~~L~nLs~~~  434 (643)
                      +.++.|++.+.+.  +...+..++..+..+++.-..  ..+..  ...++.++..+.+.  +.+++..++.++.+....-
T Consensus       128 eli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~--~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~  205 (876)
T d1qgra_         128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP--EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT  205 (876)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCH--HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGC
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHh
Confidence            3688888888654  356677788888877643221  11111  23567778877654  4678888888887754321


Q ss_pred             hhHH--HHHhcCChHHHHHHHccCCHHHHHHHHHHHHHcccccc-ccchhhccCChHHHHHHcccCChhhHHHHHHHHHH
Q 006494          435 TNKR--HIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLDE-NRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFN  511 (643)
Q Consensus       435 ~~k~--~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~-~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~n  511 (643)
                      ....  .....-.++.+...+.+++++++..+..++..+..... .-.........+.+...+.+....+...++..+..
T Consensus       206 ~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  285 (876)
T d1qgra_         206 KANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSN  285 (876)
T ss_dssp             HHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            1110  11111235666677778889999999999888864221 11111112234455566667777777777776666


Q ss_pred             hhcCCC---------------------chHHHHhcCcHHHHHHHhccC-------ChhhHHHHHHHHHHHhCChhhHHHH
Q 006494          512 LSINQS---------------------NKSRAIKAGIIPSLLKLLEDK-------ALGMVDEALSILQLLASHPEGRNEI  563 (643)
Q Consensus       512 Ls~~~e---------------------n~~~iv~~G~v~~Lv~lL~~~-------~~~~~~~Al~iL~nLa~~~~~~~~i  563 (643)
                      ++....                     +-........++.+...+...       ...+...|..++..++.....  .+
T Consensus       286 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~--~~  363 (876)
T d1qgra_         286 VCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DI  363 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GG
T ss_pred             HHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhh--hh
Confidence            653111                     011111223344444444321       123556666666666653211  11


Q ss_pred             HhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHHhhCCHHHHHHHHHHHHHhhhc
Q 006494          564 GRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYGVYEHLVEITRCGTNRGQRKANSLLQHMSKR  639 (643)
Q Consensus       564 ~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~l~~~  639 (643)
                      . ...++.+...+.+.+...++.++..+..+..+.......-.-..+++.+...+.+.+++++..|..++..+.+.
T Consensus       364 ~-~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~  438 (876)
T d1qgra_         364 V-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL  438 (876)
T ss_dssp             H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred             h-hhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHH
Confidence            1 11334445555667788888888888888765433222222235788899999999999999999999887753

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.45  E-value=0.039  Score=60.32  Aligned_cols=271  Identities=8%  Similarity=0.042  Sum_probs=152.5

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHhhhhC-hhhHHHHHhhCChHHHHHHhcCCC-HHHHHHHHHHHHhcccChhhHH-HH
Q 006494          364 CSLIQNLSSSQLNIKRDSVMKIRMLSKEN-PDNRILIANNGGIRPLVQLLSYPD-SKIQEHTVTALLNLSLDETNKR-HI  440 (643)
Q Consensus       364 ~~Lv~~L~s~~~~~~~~Al~~L~~La~~~-~~~r~~i~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~nLs~~~~~k~-~i  440 (643)
                      ..+++.+.+.++.++..++..+..+++.. +.++    -...++.|+..+.+.+ ...+..|+.+|..++..-.... .+
T Consensus        98 ~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~----wpeli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~  173 (861)
T d2bpta1          98 TNALTALVSIEPRIANAAAQLIAAIADIELPHGA----WPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQAL  173 (861)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTC----CHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTT
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCc----hHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            45667777888889988888888877432 1110    0124566777776654 5567778888877753221110 01


Q ss_pred             Hh--cCChHHHHHHHcc--CCHHHHHHHHHHHHHcccccc-c-cchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhc
Q 006494          441 AR--EGAIPAIIEILQN--GTNEARENSAAALFSLSMLDE-N-RVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSI  514 (643)
Q Consensus       441 ~~--~g~i~~Lv~lL~~--~~~~~~~~Aa~~L~~Ls~~~~-~-k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~  514 (643)
                      ..  ...+..++..+.+  .+..++..+..++.++...-. + .........++.|...+.++++.++..++.++..++.
T Consensus       174 ~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~  253 (861)
T d2bpta1         174 VSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMS  253 (861)
T ss_dssp             GGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            10  1123344444433  467889989998888753222 1 1111123356778888888899999999999998875


Q ss_pred             -CCCchHHHHhcCcHHHHHHHhccCChhhHHHHHHHHHHHhCChhh----------------------------------
Q 006494          515 -NQSNKSRAIKAGIIPSLLKLLEDKALGMVDEALSILQLLASHPEG----------------------------------  559 (643)
Q Consensus       515 -~~en~~~iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~~----------------------------------  559 (643)
                       .++.-...+..-....+.....+.++.+...++.++..++.....                                  
T Consensus       254 ~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~l  333 (861)
T d2bpta1         254 KYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLL  333 (861)
T ss_dssp             HHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence             222222222221222222333345556666666555554432100                                  


Q ss_pred             --------------HHHH----------HhcCcHHHHHHHH----hcCChHHHHHHHHHHHHhccCCHHHHHHHHHcCcH
Q 006494          560 --------------RNEI----------GRLSFIETLVEII----KNGTPKNKECATSVLLELGLNNSYFILAALQYGVY  611 (643)
Q Consensus       560 --------------~~~i----------~~~g~i~~Lv~lL----~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g~i  611 (643)
                                    +...          .....++.+...+    .+.+...++.|+.++..+..........-.-..++
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~~~l  413 (861)
T d2bpta1         334 TRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQAL  413 (861)
T ss_dssp             TCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHH
T ss_pred             HHhhccccchhHHHHHHHHHHHHHHHhhcchhhhhhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHH
Confidence                          0000          0011223332222    33455667777777777776543322221123467


Q ss_pred             HHHHHHHhhCCHHHHHHHHHHHHHhhh
Q 006494          612 EHLVEITRCGTNRGQRKANSLLQHMSK  638 (643)
Q Consensus       612 ~~L~~ll~~g~~~~k~~A~~lL~~l~~  638 (643)
                      +.+...+.+.++.++..|..++..+..
T Consensus       414 ~~l~~~l~d~~~~vr~~a~~~l~~l~~  440 (861)
T d2bpta1         414 PSILNLMNDQSLQVKETTAWCIGRIAD  440 (861)
T ss_dssp             HHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCcchhhhhHHHHHHHHHHH
Confidence            888888889999999999999887764

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.61  E-value=0.31  Score=46.70  Aligned_cols=196  Identities=14%  Similarity=0.113  Sum_probs=149.2

Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhChhhHHH----HHhh-CChHHHHHHhcCCCHHHHHHHHHHHHhcccChh
Q 006494          361 EEICSLIQNLSSSQLNIKRDSVMKIRMLSKENPDNRIL----IANN-GGIRPLVQLLSYPDSKIQEHTVTALLNLSLDET  435 (643)
Q Consensus       361 ~~i~~Lv~~L~s~~~~~~~~Al~~L~~La~~~~~~r~~----i~~~-g~i~~Lv~lL~~~~~~~~~~a~~~L~nLs~~~~  435 (643)
                      +.+..|+..|..-+.+.+..++.....+.+.....|..    +... ..+..|+.--  .++++--.+-..|.....++.
T Consensus        69 d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gy--e~~eiAl~~G~mLREcik~e~  146 (330)
T d1upka_          69 GLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIALNCGIMLRECIRHEP  146 (330)
T ss_dssp             SHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHHHHHHHHHHHHTSHH
T ss_pred             ChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhc--CCcchhhhhhHHHHHHHhhHH
Confidence            46778888888888899999888888888776666533    3322 2333333333  356666677778888788888


Q ss_pred             hHHHHHhcCChHHHHHHHccCCHHHHHHHHHHHHHccccc-cccchhhc---cCChHHHHHHcccCChhhHHHHHHHHHH
Q 006494          436 NKRHIAREGAIPAIIEILQNGTNEARENSAAALFSLSMLD-ENRVMVGN---LNGIPPLVNLLRYGSIRGKKDAATALFN  511 (643)
Q Consensus       436 ~k~~i~~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~-~~k~~i~~---~g~i~~Lv~lL~s~~~~~k~~A~~aL~n  511 (643)
                      ....|.....+..+.+.+..++-++...|.+++..|-..+ ........   ...+...-.+|.+++--+++.++..|..
T Consensus       147 lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSlKLLge  226 (330)
T d1upka_         147 LAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGE  226 (330)
T ss_dssp             HHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence            8888888888999999999999999999999988875333 22222222   2366777889999999999999999999


Q ss_pred             hhcCCCchHHHHh----cCcHHHHHHHhccCChhhHHHHHHHHHHHhCChh
Q 006494          512 LSINQSNKSRAIK----AGIIPSLLKLLEDKALGMVDEALSILQLLASHPE  558 (643)
Q Consensus       512 Ls~~~en~~~iv~----~G~v~~Lv~lL~~~~~~~~~~Al~iL~nLa~~~~  558 (643)
                      +...+.|..-|..    ..-+..++.+|++.+..++-+|..+..-.+.+|.
T Consensus       227 lLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpn  277 (330)
T d1upka_         227 LLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPN  277 (330)
T ss_dssp             HHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSS
T ss_pred             HHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCC
Confidence            9999999776653    4567888999999999999999999998888754

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=93.61  E-value=0.029  Score=52.36  Aligned_cols=61  Identities=20%  Similarity=0.240  Sum_probs=32.8

Q ss_pred             HHHHhhcCCCHHHHHHHHHHH-----HHhhh-hChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHH
Q 006494          365 SLIQNLSSSQLNIKRDSVMKI-----RMLSK-ENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVT  425 (643)
Q Consensus       365 ~Lv~~L~s~~~~~~~~Al~~L-----~~La~-~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~  425 (643)
                      .|..+++..++.++..|++.|     ..|.. .+...|...+..-..+.|..++.++++.++..++.
T Consensus        70 ~L~~Ll~D~d~~VR~~AA~~Lp~~~L~~L~~D~d~~VR~~aa~~l~~~~L~~Ll~D~d~~VR~~aa~  136 (233)
T d1lrva_          70 ALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAADRDYLVRAYVVQ  136 (233)
T ss_dssp             GGGGGTTCSSHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHHSCTGGGGGGTTCSSHHHHHHHHH
T ss_pred             HHHHHhcCCCHHHHHHHHHHcCHHHHHHHhcCCChhHHHHHHhccCHHHHHHHhcCCCHHHHHHHHh
Confidence            455667777888888777543     12221 12222333444334455666666666666655543

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=93.58  E-value=0.015  Score=54.46  Aligned_cols=167  Identities=14%  Similarity=0.029  Sum_probs=78.7

Q ss_pred             hhcCCCHHHHHHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcCCCHHHHHHHHHHH-----HhcccCh--hhHHHHH
Q 006494          369 NLSSSQLNIKRDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSYPDSKIQEHTVTAL-----LNLSLDE--TNKRHIA  441 (643)
Q Consensus       369 ~L~s~~~~~~~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L-----~nLs~~~--~~k~~i~  441 (643)
                      .|.+...+++..|++                  .-.+..|..+++++++.++..|+..|     ..|..++  ..+...+
T Consensus        50 ~l~~p~~e~Ra~Aa~------------------~a~~~~L~~Ll~D~d~~VR~~AA~~Lp~~~L~~L~~D~d~~VR~~aa  111 (233)
T d1lrva_          50 YLADPFWERRAIAVR------------------YSPVEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVA  111 (233)
T ss_dssp             GTTCSSHHHHHHHHT------------------TSCGGGGGGGTTCSSHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHH
T ss_pred             HhcCCcHHHHHHHHh------------------cCCHHHHHHHhcCCCHHHHHHHHHHcCHHHHHHHhcCCChhHHHHHH
Confidence            455667777755543                  12345566777777777777766432     1111111  1122222


Q ss_pred             hcCChHHHHHHHccCCHHHHHHHHHHHHHccccccccchhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCCchHH
Q 006494          442 REGAIPAIIEILQNGTNEARENSAAALFSLSMLDENRVMVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQSNKSR  521 (643)
Q Consensus       442 ~~g~i~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~en~~~  521 (643)
                      ..-..+.|..++++++..+|..++..                 ...+.|..++++.+..++..++..             
T Consensus       112 ~~l~~~~L~~Ll~D~d~~VR~~aa~~-----------------~~~~~L~~L~~D~d~~VR~~aA~~-------------  161 (233)
T d1lrva_         112 DRLPLEQLEQMAADRDYLVRAYVVQR-----------------IPPGRLFRFMRDEDRQVRKLVAKR-------------  161 (233)
T ss_dssp             HHSCTGGGGGGTTCSSHHHHHHHHHH-----------------SCGGGGGGTTTCSCHHHHHHHHHH-------------
T ss_pred             hccCHHHHHHHhcCCCHHHHHHHHhc-----------------cchhHHHHHhcCCCHHHHHHHHHh-------------
Confidence            21123444555555555555544432                 123445555566666666655432             


Q ss_pred             HHhcCcHHHHHHHhccCChhhHHHHHHHH-----HHHhCC--hhhHHHHHhcCcHHHHHHHHhcCChHHHHHHH
Q 006494          522 AIKAGIIPSLLKLLEDKALGMVDEALSIL-----QLLASH--PEGRNEIGRLSFIETLVEIIKNGTPKNKECAT  588 (643)
Q Consensus       522 iv~~G~v~~Lv~lL~~~~~~~~~~Al~iL-----~nLa~~--~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~  588 (643)
                          -..+.|..++.+.++.+...++..|     ..|+..  ...|..+++. ..+.++..|...++.+++.|+
T Consensus       162 ----~~~~~L~~l~~D~d~~VR~~aa~~L~~~~L~~l~~D~d~~VR~aaae~-~~~~ll~~L~D~d~~VR~aA~  230 (233)
T d1lrva_         162 ----LPEESLGLMTQDPEPEVRRIVASRLRGDDLLELLHDPDWTVRLAAVEH-ASLEALRELDEPDPEVRLAIA  230 (233)
T ss_dssp             ----SCGGGGGGSTTCSSHHHHHHHHHHCCGGGGGGGGGCSSHHHHHHHHHH-SCHHHHHHCCCCCHHHHHHHH
T ss_pred             ----cCHHHHHHHccCCCHHHHHHHHHhcCcHHHHHHHhCCCHHHHHHHHHh-ccHHHHHHhCCCCHHHHHHHH
Confidence                1223455555555555555544322     122222  1233333332 234445555556666666554

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.75  E-value=1.5  Score=42.55  Aligned_cols=164  Identities=19%  Similarity=0.266  Sum_probs=105.1

Q ss_pred             HHHHHHHHHhhhhChhhHHHHHhhCChHHHHHHhcC-----------CCHHHHHHHHHHHHhcccChhhHHHHH-hcCCh
Q 006494          379 RDSVMKIRMLSKENPDNRILIANNGGIRPLVQLLSY-----------PDSKIQEHTVTALLNLSLDETNKRHIA-REGAI  446 (643)
Q Consensus       379 ~~Al~~L~~La~~~~~~r~~i~~~g~i~~Lv~lL~~-----------~~~~~~~~a~~~L~nLs~~~~~k~~i~-~~g~i  446 (643)
                      ...+..|+.--+.++-....-..++|+..|+.+|..           .+...+..++.+|..+..+..+...+. ..+++
T Consensus        21 ~~~L~sL~v~Lrt~~~sWv~~F~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~~~G~~~vl~~~~~i  100 (343)
T d2bnxa1          21 LSCLESLRVSLNNNPVSWVQTFGAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGI  100 (343)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHH
T ss_pred             HHHHHHHHHHHhcCCchHHHHHHhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhccHHHHHHHHcChHHH
Confidence            334444443333444333222245677777777631           134567788899998888777776666 67899


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHcccccc----c---------cchhhccCChHHHHHHcccC-ChhhHHHHHHHHHHh
Q 006494          447 PAIIEILQNGTNEARENSAAALFSLSMLDE----N---------RVMVGNLNGIPPLVNLLRYG-SIRGKKDAATALFNL  512 (643)
Q Consensus       447 ~~Lv~lL~~~~~~~~~~Aa~~L~~Ls~~~~----~---------k~~i~~~g~i~~Lv~lL~s~-~~~~k~~A~~aL~nL  512 (643)
                      ..|+..|.+....++..|.-+|..++...+    .         .....+.+-+.++++.++++ +.+.+..++..+-.|
T Consensus       101 ~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~l  180 (343)
T d2bnxa1         101 LLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINAL  180 (343)
T ss_dssp             HHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            999999999999999999999988875432    1         11233456788999988776 456666555555556


Q ss_pred             hcCCCc-------hHHHHhcCcHHHHHHHhcc-CChhhH
Q 006494          513 SINQSN-------KSRAIKAGIIPSLLKLLED-KALGMV  543 (643)
Q Consensus       513 s~~~en-------~~~iv~~G~v~~Lv~lL~~-~~~~~~  543 (643)
                      ..+.++       |..+..+|..+. ++.|.. .++.+.
T Consensus       181 i~~~~dl~~R~~lR~E~~~~Gl~~i-l~~l~~~~~~~L~  218 (343)
T d2bnxa1         181 ITPAEELDFRVHIRSELMRLGLHQV-LQELREIENEDMK  218 (343)
T ss_dssp             HTTCSCHHHHHHHHHHHHHTTHHHH-HHHHTTCCCHHHH
T ss_pred             HcCcccHHHHHHHHHHHHHCChHHH-HHHHHccCChHHH
Confidence            666554       455667776654 455544 454443

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.76  E-value=4.9  Score=38.05  Aligned_cols=157  Identities=15%  Similarity=0.097  Sum_probs=119.0

Q ss_pred             hhhccCChHHHHHHcccCChhhHHHHHHHHHHhhcCCC-chHHHHh--cCcHHHHHHHhcc-CChhhHHHHHHHHHHHhC
Q 006494          480 MVGNLNGIPPLVNLLRYGSIRGKKDAATALFNLSINQS-NKSRAIK--AGIIPSLLKLLED-KALGMVDEALSILQLLAS  555 (643)
Q Consensus       480 ~i~~~g~i~~Lv~lL~s~~~~~k~~A~~aL~nLs~~~e-n~~~iv~--~G~v~~Lv~lL~~-~~~~~~~~Al~iL~nLa~  555 (643)
                      .+...+.+..|+..|..=+-+.+++++.+..+|..... ++...++  ..-...|..++.. +++++.-.+=.+|.....
T Consensus        64 e~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye~~eiAl~~G~mLREcik  143 (330)
T d1upka_          64 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIR  143 (330)
T ss_dssp             HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHT
T ss_pred             HHHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcCCcchhhhhhHHHHHHHh
Confidence            34456788889999988899999999999999987443 3333222  1112333333333 566777778888999999


Q ss_pred             ChhhHHHHHhcCcHHHHHHHHhcCChHHHHHHHHHHHHhccCCHHHHHHHHHcC---cHHHHHHHHhhCCHHHHHHHHHH
Q 006494          556 HPEGRNEIGRLSFIETLVEIIKNGTPKNKECATSVLLELGLNNSYFILAALQYG---VYEHLVEITRCGTNRGQRKANSL  632 (643)
Q Consensus       556 ~~~~~~~i~~~g~i~~Lv~lL~~~s~~~ke~A~~~L~~L~~~~~~~~~~~~~~g---~i~~L~~ll~~g~~~~k~~A~~l  632 (643)
                      ++.....+.....+-.+.+.+..++=++-.-|..++..+-......+...+..+   .......++.+++--+|+.+..+
T Consensus       144 ~e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSlKL  223 (330)
T d1upka_         144 HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKL  223 (330)
T ss_dssp             SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             hHHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence            998888888888899999999999888888899999988777776666666543   46666778899999999999999


Q ss_pred             HHHh
Q 006494          633 LQHM  636 (643)
Q Consensus       633 L~~l  636 (643)
                      |..+
T Consensus       224 Lgel  227 (330)
T d1upka_         224 LGEL  227 (330)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9865